BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023088
(287 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225456791|ref|XP_002277389.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Vitis
vinifera]
gi|297733638|emb|CBI14885.3| unnamed protein product [Vitis vinifera]
Length = 357
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/272 (76%), Positives = 236/272 (86%), Gaps = 2/272 (0%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKR+F+PI K+ S+KKP+LS D T + S EE KK+PLKF+TWNANS L+RVKNNW
Sbjct: 1 MKRYFQPIGKDGSSKKPSLSKEDGDENTDQVSEEE--KKEPLKFLTWNANSFLIRVKNNW 58
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
PEF+ F++ DPDVIA+QEVRMPAAGSK APKNH ELKDDT +SREEK ILM ALS PPF
Sbjct: 59 PEFTKFVSDLDPDVIAVQEVRMPAAGSKGAPKNHGELKDDTSSSREEKKILMHALSRPPF 118
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 180
NY++WWSLADSKYAGTAL VKKCFQPKKVSFS+++ A K+EP+GRVILAEFE+F LLNT
Sbjct: 119 GNYRVWWSLADSKYAGTALFVKKCFQPKKVSFSIDQKASKHEPEGRVILAEFESFRLLNT 178
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
Y PNNGWK+EE SFQRRRKWDKR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHPEFF+AA
Sbjct: 179 YVPNNGWKDEETSFQRRRKWDKRMLEFVVQSSDKPLIWCGDLNVSHEEIDVSHPEFFSAA 238
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
K NGYVPPNKED GQPGFT+AER+RFG ILKE
Sbjct: 239 KHNGYVPPNKEDCGQPGFTLAERRRFGGILKE 270
>gi|449487730|ref|XP_004157772.1| PREDICTED: LOW QUALITY PROTEIN: DNA-(apurinic or apyrimidinic site)
lyase-like [Cucumis sativus]
Length = 361
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/272 (76%), Positives = 236/272 (86%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFFKPIEKE S+KK ALSPS KDG+ ++ + KK+PLKFVTWNANSLLLRVKN+W
Sbjct: 1 MKRFFKPIEKEGSSKKVALSPSLKDGDDGDSEASVPDKKEPLKFVTWNANSLLLRVKNDW 60
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
EF+ F+T DPD IA+QEVR+PAAGSK A KN ELKDDT SREEK +LMRALSSPPF
Sbjct: 61 SEFTKFVTNLDPDAIAIQEVRIPAAGSKGASKNQGELKDDTNTSREEKQMLMRALSSPPF 120
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 180
NY++WWSL+DSKYAGTAL +KKCFQPKKV F+L++ A K+E DGRVILAEFETF LLNT
Sbjct: 121 ANYRVWWSLSDSKYAGTALFIKKCFQPKKVXFNLDRIASKHEVDGRVILAEFETFRLLNT 180
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
Y+PNNGWKEEE SF+RRRKWDKR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHP+FF+AA
Sbjct: 181 YSPNNGWKEEEKSFKRRRKWDKRMLEFVIQSSDKPLIWCGDLNVSHEEIDVSHPDFFSAA 240
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
KLNGY+PPNKED GQPGFT+AER RF AILKE
Sbjct: 241 KLNGYIPPNKEDCGQPGFTLAERNRFNAILKE 272
>gi|224133800|ref|XP_002321664.1| predicted protein [Populus trichocarpa]
gi|222868660|gb|EEF05791.1| predicted protein [Populus trichocarpa]
Length = 366
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/279 (77%), Positives = 242/279 (86%), Gaps = 7/279 (2%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTE------TSSEENS-KKDPLKFVTWNANSLL 53
MKRFFKPIEK+ SAKKP LS +++D E E T++ N+ KK+PLKF+TWNANSLL
Sbjct: 1 MKRFFKPIEKDGSAKKPTLSTNQEDNEKKEASESEETNNNGNTMKKEPLKFITWNANSLL 60
Query: 54 LRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMR 113
LRVKNNWP FS F++ DPDVI +QEVRMPAAGSK APKN E+KDDT +SREEK ILMR
Sbjct: 61 LRVKNNWPGFSKFVSDIDPDVIVIQEVRMPAAGSKGAPKNSGEIKDDTNSSREEKKILMR 120
Query: 114 ALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 173
ALSS PF NY +WWSLADSKYAGTALLVKKCFQP KVSF+L++TA K+EPDGRVILAEF+
Sbjct: 121 ALSSSPFGNYNVWWSLADSKYAGTALLVKKCFQPVKVSFALDQTASKHEPDGRVILAEFK 180
Query: 174 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSH 233
TF LLNTYAPNNGWKEEE SFQRRRKWDKR+ E V+Q S KPLIWCGDLNVSHEEIDVSH
Sbjct: 181 TFRLLNTYAPNNGWKEEEKSFQRRRKWDKRMLEVVVQLSDKPLIWCGDLNVSHEEIDVSH 240
Query: 234 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
PEFF+AAK+NGYVPPNKED GQPGFT++ERKRFGAILKE
Sbjct: 241 PEFFSAAKVNGYVPPNKEDCGQPGFTLSERKRFGAILKE 279
>gi|449469598|ref|XP_004152506.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Cucumis
sativus]
Length = 361
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/272 (76%), Positives = 236/272 (86%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFFKPIEKE S+KK ALSPS KDG+ ++ + KK+PLKFVTWNANSLLLRVKN+W
Sbjct: 1 MKRFFKPIEKEGSSKKVALSPSLKDGDDGDSEASVPDKKEPLKFVTWNANSLLLRVKNDW 60
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
EF+ F+T DPD IA+QEVR+PAAGSK A KN ELKDDT SREEK +LMRALSSPPF
Sbjct: 61 SEFTKFVTNLDPDAIAIQEVRIPAAGSKGASKNQGELKDDTNTSREEKQMLMRALSSPPF 120
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 180
NY++WWSL+DSKYAGTAL +KKCFQPKKV F+L++ A K+E DGRVILAEFETF LLNT
Sbjct: 121 ANYRVWWSLSDSKYAGTALFIKKCFQPKKVFFNLDRIASKHEVDGRVILAEFETFRLLNT 180
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
Y+PNNGWKEEE SF+RRRKWDKR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHP+FF+AA
Sbjct: 181 YSPNNGWKEEEKSFKRRRKWDKRMLEFVIQSSDKPLIWCGDLNVSHEEIDVSHPDFFSAA 240
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
KLNGY+PPNKED GQPGFT+AER RF AILKE
Sbjct: 241 KLNGYIPPNKEDCGQPGFTLAERNRFNAILKE 272
>gi|297816036|ref|XP_002875901.1| hypothetical protein ARALYDRAFT_347932 [Arabidopsis lyrata subsp.
lyrata]
gi|297321739|gb|EFH52160.1| hypothetical protein ARALYDRAFT_347932 [Arabidopsis lyrata subsp.
lyrata]
Length = 684
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/284 (74%), Positives = 239/284 (84%), Gaps = 3/284 (1%)
Query: 1 MKRFFKPIEKECS--AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN 58
MKRFFKPIEKE S AKKP LSP K++G+ + EE ++K+P KFVTWNANS LLRVKN
Sbjct: 321 MKRFFKPIEKEGSTAAKKPCLSPEKREGDG-DGVEEEKNQKEPSKFVTWNANSFLLRVKN 379
Query: 59 NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118
+W +FS F++ FDPDVIA+QEVRMPAAG K PKN +EL DDTK REEK IL RALSSP
Sbjct: 380 DWSQFSKFVSDFDPDVIAVQEVRMPAAGGKGKPKNPEELSDDTKVLREEKQILTRALSSP 439
Query: 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 178
PF NY++WWSLADSKYAGTALLVKKCF+PKKV F+L+K A K+EPDGRVILAEFETF LL
Sbjct: 440 PFGNYRVWWSLADSKYAGTALLVKKCFKPKKVYFNLDKLASKHEPDGRVILAEFETFRLL 499
Query: 179 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFA 238
NTY+PNNGWKEEENSFQRRRKWDKRI EF+ + S KPLIWCGDLNVSHEEIDVSHPEFFA
Sbjct: 500 NTYSPNNGWKEEENSFQRRRKWDKRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFA 559
Query: 239 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
AKLNGYVPPNKED GQPGFT +ER+RFG +KE ++ + L
Sbjct: 560 TAKLNGYVPPNKEDCGQPGFTPSERRRFGETMKEGMLVDAYRYL 603
>gi|4678346|emb|CAB41156.1| putative protein [Arabidopsis thaliana]
Length = 686
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/274 (75%), Positives = 234/274 (85%), Gaps = 3/274 (1%)
Query: 1 MKRFFKPIEKECS--AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN 58
MKRFFKPIEKE S AKKP LSP K+DG+ + EE ++ +P KF+TWNANS LLRVKN
Sbjct: 323 MKRFFKPIEKENSPAAKKPCLSPEKRDGDG-DGVEEEKNQNEPSKFMTWNANSFLLRVKN 381
Query: 59 NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118
+W +FS F++ FDPDVIA+QEVRMPAAG K PKNH+EL DDTK REEK IL RALSSP
Sbjct: 382 DWSQFSKFVSDFDPDVIAIQEVRMPAAGGKGKPKNHEELSDDTKVLREEKQILTRALSSP 441
Query: 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 178
PF NY +WWSLADSKYAGTALLVKKCF+P+KV F+L+K A K+EPDGRVILAEFETF LL
Sbjct: 442 PFGNYGVWWSLADSKYAGTALLVKKCFKPRKVYFNLDKLASKHEPDGRVILAEFETFRLL 501
Query: 179 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFA 238
NTY+PNNGWK+EEN+FQRRRKWDKRI EF+ + S KPLIWCGDLNVSHEEIDVSHPEFFA
Sbjct: 502 NTYSPNNGWKDEENAFQRRRKWDKRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFA 561
Query: 239 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
AKLNGYVPPNKED GQPGFT +ER RFGA +KE
Sbjct: 562 TAKLNGYVPPNKEDCGQPGFTPSERGRFGATIKE 595
>gi|42565714|ref|NP_566904.2| endonuclease/exonuclease/phosphatase domain-containing protein
[Arabidopsis thaliana]
gi|53828525|gb|AAU94372.1| At3g48425 [Arabidopsis thaliana]
gi|55733769|gb|AAV59281.1| At3g48425 [Arabidopsis thaliana]
gi|332644894|gb|AEE78415.1| endonuclease/exonuclease/phosphatase domain-containing protein
[Arabidopsis thaliana]
Length = 364
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/274 (75%), Positives = 234/274 (85%), Gaps = 3/274 (1%)
Query: 1 MKRFFKPIEKECS--AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN 58
MKRFFKPIEKE S AKKP LSP K+DG+ + EE ++ +P KF+TWNANS LLRVKN
Sbjct: 1 MKRFFKPIEKENSPAAKKPCLSPEKRDGDG-DGVEEEKNQNEPSKFMTWNANSFLLRVKN 59
Query: 59 NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118
+W +FS F++ FDPDVIA+QEVRMPAAG K PKNH+EL DDTK REEK IL RALSSP
Sbjct: 60 DWSQFSKFVSDFDPDVIAIQEVRMPAAGGKGKPKNHEELSDDTKVLREEKQILTRALSSP 119
Query: 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 178
PF NY +WWSLADSKYAGTALLVKKCF+P+KV F+L+K A K+EPDGRVILAEFETF LL
Sbjct: 120 PFGNYGVWWSLADSKYAGTALLVKKCFKPRKVYFNLDKLASKHEPDGRVILAEFETFRLL 179
Query: 179 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFA 238
NTY+PNNGWK+EEN+FQRRRKWDKRI EF+ + S KPLIWCGDLNVSHEEIDVSHPEFFA
Sbjct: 180 NTYSPNNGWKDEENAFQRRRKWDKRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFA 239
Query: 239 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
AKLNGYVPPNKED GQPGFT +ER RFGA +KE
Sbjct: 240 TAKLNGYVPPNKEDCGQPGFTPSERGRFGATIKE 273
>gi|356508768|ref|XP_003523126.1| PREDICTED: exodeoxyribonuclease-like [Glycine max]
Length = 355
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/274 (73%), Positives = 225/274 (82%), Gaps = 10/274 (3%)
Query: 1 MKRFFKPIEKEC--SAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN 58
MKRFFK +EK+ S KKP E + E N KK+PLKF+TWNANS LLRVKN
Sbjct: 1 MKRFFKVVEKDSDGSVKKPR--------ENDSEAEESNEKKEPLKFMTWNANSFLLRVKN 52
Query: 59 NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118
NWP+F+N ITTFDPD+IA+QEVRMPAAG+K A K E+KDDT A+REEK IL RALS+P
Sbjct: 53 NWPDFTNLITTFDPDLIAIQEVRMPAAGAKGASKIQGEIKDDTSAAREEKKILTRALSAP 112
Query: 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 178
PF NY +WWSLADSKYAGTALLVKKCF+PK V F+L+K A K+EPDGRVIL EFET LL
Sbjct: 113 PFGNYHVWWSLADSKYAGTALLVKKCFKPKSVVFNLDKLASKHEPDGRVILVEFETLRLL 172
Query: 179 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFA 238
NTY PNNGWKEE NSFQRRRKWDKRI EFV Q S KPLIWCGDLNVSHEEIDVSHP+FF+
Sbjct: 173 NTYVPNNGWKEEANSFQRRRKWDKRILEFVTQSSDKPLIWCGDLNVSHEEIDVSHPDFFS 232
Query: 239 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
AKLNGY+PPNKED GQPGFT++ERKRFG IL+E
Sbjct: 233 VAKLNGYIPPNKEDCGQPGFTLSERKRFGTILRE 266
>gi|358348989|ref|XP_003638523.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
gi|355504458|gb|AES85661.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
Length = 367
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/280 (72%), Positives = 228/280 (81%), Gaps = 10/280 (3%)
Query: 1 MKRFFKPIEKE---CSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVK 57
MKRFFK IEK+ CS K ++ + + + EE +KK+PLKF+TWNANSLLLRVK
Sbjct: 1 MKRFFKVIEKDSEKCSKKPKENENEEEKKQ--DENEEEATKKEPLKFMTWNANSLLLRVK 58
Query: 58 NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDA-----PKNHQELKDDTKASREEKLILM 112
NNW EFSNFITTFDPDVIA+QEVRMPAA S + PKN E+KDDT A+REEK ILM
Sbjct: 59 NNWSEFSNFITTFDPDVIAIQEVRMPAASSSSSNSKSAPKNQAEVKDDTNAAREEKRILM 118
Query: 113 RALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 172
RALS+PPF NY +WWSLA+SKYAGTAL VKKCF+PK V F+L+K A K+EPDGRVIL EF
Sbjct: 119 RALSNPPFGNYHVWWSLAESKYAGTALFVKKCFKPKSVVFNLDKIASKHEPDGRVILVEF 178
Query: 173 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVS 232
ET LLNTY PNNGWKEE NSFQRRRKWDKRI EFV Q S KPLIWCGDLNVSHEEIDVS
Sbjct: 179 ETLRLLNTYVPNNGWKEEPNSFQRRRKWDKRILEFVNQNSDKPLIWCGDLNVSHEEIDVS 238
Query: 233 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
PEFF+ AKLNGYVPPNKED+GQPGFT+AER RFG IL+E
Sbjct: 239 QPEFFSTAKLNGYVPPNKEDYGQPGFTLAERARFGTILRE 278
>gi|358348991|ref|XP_003638524.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
gi|355504459|gb|AES85662.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
Length = 278
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/280 (72%), Positives = 228/280 (81%), Gaps = 10/280 (3%)
Query: 1 MKRFFKPIEKE---CSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVK 57
MKRFFK IEK+ CS K ++ + + + EE +KK+PLKF+TWNANSLLLRVK
Sbjct: 1 MKRFFKVIEKDSEKCSKKPKENENEEEKKQ--DENEEEATKKEPLKFMTWNANSLLLRVK 58
Query: 58 NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDA-----PKNHQELKDDTKASREEKLILM 112
NNW EFSNFITTFDPDVIA+QEVRMPAA S + PKN E+KDDT A+REEK ILM
Sbjct: 59 NNWSEFSNFITTFDPDVIAIQEVRMPAASSSSSNSKSAPKNQAEVKDDTNAAREEKRILM 118
Query: 113 RALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 172
RALS+PPF NY +WWSLA+SKYAGTAL VKKCF+PK V F+L+K A K+EPDGRVIL EF
Sbjct: 119 RALSNPPFGNYHVWWSLAESKYAGTALFVKKCFKPKSVVFNLDKIASKHEPDGRVILVEF 178
Query: 173 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVS 232
ET LLNTY PNNGWKEE NSFQRRRKWDKRI EFV Q S KPLIWCGDLNVSHEEIDVS
Sbjct: 179 ETLRLLNTYVPNNGWKEEPNSFQRRRKWDKRILEFVNQNSDKPLIWCGDLNVSHEEIDVS 238
Query: 233 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
PEFF+ AKLNGYVPPNKED+GQPGFT+AER RFG IL+E
Sbjct: 239 QPEFFSTAKLNGYVPPNKEDYGQPGFTLAERARFGTILRE 278
>gi|242078097|ref|XP_002443817.1| hypothetical protein SORBIDRAFT_07g002730 [Sorghum bicolor]
gi|241940167|gb|EES13312.1| hypothetical protein SORBIDRAFT_07g002730 [Sorghum bicolor]
Length = 369
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/278 (66%), Positives = 223/278 (80%), Gaps = 10/278 (3%)
Query: 1 MKRFFKPIEKECS--------AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSL 52
MKRFF+P+ K+ S A +P P+ G T E ++P KF+TWNANSL
Sbjct: 1 MKRFFQPVAKDGSPSKKRQAAAAEPEGGPASA-GAATGGDGEGRPAEEPRKFLTWNANSL 59
Query: 53 LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILM 112
LLR+K++WP FS + DPDVI +QEVRMPAAGSK APKN ELKDDT +SR+EK +++
Sbjct: 60 LLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSSSRDEKQVVL 119
Query: 113 RALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 172
RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T+ K+E DGRVI+AEF
Sbjct: 120 RALSTSPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHETDGRVIIAEF 179
Query: 173 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVS 232
E+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KPLIWCGDLNVSHEEIDVS
Sbjct: 180 ESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFV-QHVDKPLIWCGDLNVSHEEIDVS 238
Query: 233 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
HP+FF++AKLNGY PPN+ED GQPGFT AER+RFG IL
Sbjct: 239 HPDFFSSAKLNGYTPPNQEDCGQPGFTPAERRRFGNIL 276
>gi|115488172|ref|NP_001066573.1| Os12g0279600 [Oryza sativa Japonica Group]
gi|77554323|gb|ABA97119.1| exodeoxyribonuclease III family protein, expressed [Oryza sativa
Japonica Group]
gi|113649080|dbj|BAF29592.1| Os12g0279600 [Oryza sativa Japonica Group]
gi|215687325|dbj|BAG91875.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222616909|gb|EEE53041.1| hypothetical protein OsJ_35763 [Oryza sativa Japonica Group]
Length = 379
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/294 (63%), Positives = 233/294 (79%), Gaps = 27/294 (9%)
Query: 1 MKRFFKPIEKECSA--KKPALSPSKK--------------------DGETTETSSEENSK 38
MKRFF+P+ K+ S K+PA + + +G++ EE
Sbjct: 1 MKRFFQPVPKDGSPAKKRPAAAAAASASDSDSLGGDAPAAAACAVGEGDSPPAPREE--- 57
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELK 98
+P +FVTWNANSLLLR+K++WP F F++ DPDVI +QEVRMPAAGSK APKN +LK
Sbjct: 58 -EPRRFVTWNANSLLLRMKSDWPAFCQFVSRVDPDVICVQEVRMPAAGSKGAPKNPGQLK 116
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTA 158
DDT +SR+EK +++RALSSPPFK+Y++WWSL+DSKYAGTA+++KK F+PKKVSF+L++T+
Sbjct: 117 DDTSSSRDEKQVVLRALSSPPFKDYRVWWSLSDSKYAGTAMIIKKKFEPKKVSFNLDRTS 176
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIW 218
K+EPDGRVI+AEFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KPLIW
Sbjct: 177 SKHEPDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQQVD-KPLIW 235
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
CGDLNVSHEEIDVSHP+FF++AKLNGY+PPNKED GQPGFT++ER+RFG IL +
Sbjct: 236 CGDLNVSHEEIDVSHPDFFSSAKLNGYIPPNKEDCGQPGFTLSERRRFGNILSQ 289
>gi|413917522|gb|AFW57454.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 383
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/279 (65%), Positives = 226/279 (81%), Gaps = 10/279 (3%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKK--DGETTETSS-------EENSKKDPLKFVTWNANS 51
MKRFF+P+ K+ S K L+ + + DG T+ ++ E ++P KF+TWNANS
Sbjct: 1 MKRFFQPVPKDGSPSKKRLAGAAEPGDGPTSAGAATGAGGDVEGRPTEEPFKFLTWNANS 60
Query: 52 LLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111
LLLR+K++WP FS + DPDVI +QEVRMPAAGSK APKN ELKDDT SR+EK ++
Sbjct: 61 LLLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSLSRDEKQVV 120
Query: 112 MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAE 171
+RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T+ K+E DGRVI+AE
Sbjct: 121 LRALSASPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHEADGRVIIAE 180
Query: 172 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDV 231
FE+F LLNTY+PNNGWKEEEN+FQRRRKWDKR+ EFV Q KPLIWCGDLNVSHEEIDV
Sbjct: 181 FESFLLLNTYSPNNGWKEEENAFQRRRKWDKRMLEFV-QHVDKPLIWCGDLNVSHEEIDV 239
Query: 232 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
SHP+FF++AKLNGY PPNKED GQPGFT AER+RFG IL
Sbjct: 240 SHPDFFSSAKLNGYTPPNKEDCGQPGFTPAERRRFGNIL 278
>gi|226531290|ref|NP_001144669.1| uncharacterized protein LOC100277695 [Zea mays]
gi|195645474|gb|ACG42205.1| hypothetical protein [Zea mays]
gi|238007716|gb|ACR34893.1| unknown [Zea mays]
gi|413917521|gb|AFW57453.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 373
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/279 (65%), Positives = 226/279 (81%), Gaps = 10/279 (3%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKK--DGETTETSS-------EENSKKDPLKFVTWNANS 51
MKRFF+P+ K+ S K L+ + + DG T+ ++ E ++P KF+TWNANS
Sbjct: 1 MKRFFQPVPKDGSPSKKRLAGAAEPGDGPTSAGAATGAGGDVEGRPTEEPFKFLTWNANS 60
Query: 52 LLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111
LLLR+K++WP FS + DPDVI +QEVRMPAAGSK APKN ELKDDT SR+EK ++
Sbjct: 61 LLLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSLSRDEKQVV 120
Query: 112 MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAE 171
+RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T+ K+E DGRVI+AE
Sbjct: 121 LRALSASPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHEADGRVIIAE 180
Query: 172 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDV 231
FE+F LLNTY+PNNGWKEEEN+FQRRRKWDKR+ EFV Q KPLIWCGDLNVSHEEIDV
Sbjct: 181 FESFLLLNTYSPNNGWKEEENAFQRRRKWDKRMLEFV-QHVDKPLIWCGDLNVSHEEIDV 239
Query: 232 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
SHP+FF++AKLNGY PPNKED GQPGFT AER+RFG IL
Sbjct: 240 SHPDFFSSAKLNGYTPPNKEDCGQPGFTPAERRRFGNIL 278
>gi|357160291|ref|XP_003578718.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Brachypodium distachyon]
Length = 369
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/289 (63%), Positives = 222/289 (76%), Gaps = 8/289 (2%)
Query: 1 MKRFFKPIEKECSAKKPALSP-------SKKDGETTETSSEENSKKDPLKFVTWNANSLL 53
MKRFF+P+ KE S K S E ++P +F+TWNANSLL
Sbjct: 1 MKRFFQPVPKEGSPAKRRPSEVVASDCVDGPAATAAGAGGEGAPGQEPRRFMTWNANSLL 60
Query: 54 LRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMR 113
LR+K++WP F F++ DPDVI +QEVRMPAAGSK APKN ELKDDT +SREEK I++R
Sbjct: 61 LRMKSDWPAFCQFVSRLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSSSREEKQIVLR 120
Query: 114 ALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 173
ALSS PFK+Y++WWSL+DSKYAGTA+ VKK F+PKKVSF+L++T+ K+E DGRVI+ EFE
Sbjct: 121 ALSSSPFKDYRVWWSLSDSKYAGTAVFVKKMFEPKKVSFNLDRTSSKHESDGRVIIVEFE 180
Query: 174 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSH 233
+ LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KP IWCGDLNVSHEEIDVSH
Sbjct: 181 SLLLLNTYAPNNGWKEEENSFQRRRKWDKRMFEFVQQVD-KPFIWCGDLNVSHEEIDVSH 239
Query: 234 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
P+FF++AKLNGY+PPNKED GQPGFT+AER+RFG IL + + + L
Sbjct: 240 PDFFSSAKLNGYIPPNKEDCGQPGFTLAERQRFGNILSQGKLVDAYRHL 288
>gi|148908559|gb|ABR17389.1| unknown [Picea sitchensis]
Length = 303
Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/292 (61%), Positives = 220/292 (75%), Gaps = 14/292 (4%)
Query: 1 MKRFFKPIEKECSAKK---------PALSPSKKDGETTETSSEE--NSKKDPLKFVTWNA 49
MKR+F+P+EK+ S KK SP +G T +EE KK+PLKF++WNA
Sbjct: 1 MKRYFQPVEKDGSFKKHKEQLTANPSHSSPPTSNGTTVPPQAEEADGVKKEPLKFMSWNA 60
Query: 50 NSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKL 109
NSLLLR+K N E ++F+ DPDVIA+QEVR+PAAG K KN ELKDDT ++REEK
Sbjct: 61 NSLLLRLKKNRTELADFVQRLDPDVIAIQEVRIPAAGGKGGSKNQGELKDDTSSAREEKQ 120
Query: 110 ILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEK---TALKYEPDGR 166
LMRA+S PP NY++WWSL D+KYAGTAL VK QP KV+FSL++ +ALK+E DGR
Sbjct: 121 TLMRAISCPPLSNYRVWWSLGDTKYAGTALFVKHQCQPLKVTFSLDQIGSSALKHEVDGR 180
Query: 167 VILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSH 226
VI+AEFE F LLN+Y PNNGWK++E F+RRRKWD+R+ +FVL S KPLIWCGDLNVSH
Sbjct: 181 VIVAEFEGFRLLNSYVPNNGWKDDETGFRRRRKWDQRMLDFVLGVSDKPLIWCGDLNVSH 240
Query: 227 EEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLC 278
++IDVSHPEFF+ AK+ GY+PPNKED GQPGFTIAER+RF IL +Y IF C
Sbjct: 241 QDIDVSHPEFFSNAKIAGYMPPNKEDCGQPGFTIAERRRFSTILSQYYIFSC 292
>gi|218186665|gb|EEC69092.1| hypothetical protein OsI_37986 [Oryza sativa Indica Group]
Length = 470
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 172/273 (63%), Positives = 215/273 (78%), Gaps = 27/273 (9%)
Query: 1 MKRFFKPIEKECS--AKKPALSPSKK--------------------DGETTETSSEENSK 38
MKRFF+P+ K+ S K+PA + + +G++ EE
Sbjct: 1 MKRFFQPVPKDGSPAKKRPAAAAAASASDSDSLGGDAPAAAACAVGEGDSPPAPREE--- 57
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELK 98
+P +FVTWNANSLLLR+K++WP F F++ DPDVI +QEVRMPAAGSK APKN +LK
Sbjct: 58 -EPRRFVTWNANSLLLRMKSDWPAFCQFVSRVDPDVICVQEVRMPAAGSKGAPKNPGQLK 116
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTA 158
DDT +SR+EK +++RALSSPPFK+Y++WWSL+DSKYAGTA+++KK F+PKKVSF+L++T+
Sbjct: 117 DDTSSSRDEKQVVLRALSSPPFKDYRVWWSLSDSKYAGTAMIIKKKFEPKKVSFNLDRTS 176
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIW 218
K+EPDGRVI+AEFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KPLIW
Sbjct: 177 SKHEPDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQQVD-KPLIW 235
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKE 251
CGDLNVSHEEIDVSHP+FF++AKLNGY+PPNKE
Sbjct: 236 CGDLNVSHEEIDVSHPDFFSSAKLNGYIPPNKE 268
>gi|255540403|ref|XP_002511266.1| ap endonuclease, putative [Ricinus communis]
gi|223550381|gb|EEF51868.1| ap endonuclease, putative [Ricinus communis]
Length = 326
Score = 346 bits (888), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 178/272 (65%), Positives = 200/272 (73%), Gaps = 33/272 (12%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFFKPIEKE SAKKPAL+ +G+ E + K PLKF+TWNANSLLLR KN+W
Sbjct: 1 MKRFFKPIEKEGSAKKPALAQEDSEGKIGENGDNNTTNKQPLKFITWNANSLLLRAKNDW 60
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
PEF+ F++T DPDVIA+QEVRMPAAGSK APKN ELKDDT +SREEK ILMRALSSPPF
Sbjct: 61 PEFTKFVSTLDPDVIAIQEVRMPAAGSKGAPKNPGELKDDTSSSREEKQILMRALSSPPF 120
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 180
+Y+IWWSLADSKYAGTALLVKK F KVSFSL+K+
Sbjct: 121 GSYKIWWSLADSKYAGTALLVKKRFHNIKVSFSLDKSG---------------------- 158
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
+SF R +K DKR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHPEFF AA
Sbjct: 159 ----------GDSF-REKKMDKRMLEFVVQLSDKPLIWCGDLNVSHEEIDVSHPEFFIAA 207
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
K NGYVPPNKED GQPGFT+ ERKRFG+IL+E
Sbjct: 208 KQNGYVPPNKEDCGQPGFTLNERKRFGSILRE 239
>gi|302823174|ref|XP_002993241.1| hypothetical protein SELMODRAFT_187330 [Selaginella moellendorffii]
gi|300138911|gb|EFJ05662.1| hypothetical protein SELMODRAFT_187330 [Selaginella moellendorffii]
Length = 351
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 163/273 (59%), Positives = 204/273 (74%), Gaps = 13/273 (4%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFF+P+E++ ++KKP+++ + + EN+ DP +F++WNANSLLLR KNN
Sbjct: 1 MKRFFQPVERDGASKKPSIAIA---------NGGENACADPSRFMSWNANSLLLRFKNNR 51
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
E +FI FDPDVI +QEVR+PAAG K KN E+KDD+ A+R +K +MR LS P
Sbjct: 52 EEVMSFIRGFDPDVICIQEVRLPAAGFKGEKKNPGEIKDDSAAARNDKQAVMRVLSVSPM 111
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE---KTALKYEPDGRVILAEFETFYL 177
+Y +WWSL ++KYAGTAL VK CF+P V+F+++ K A ++E DGR+ILAEF +F L
Sbjct: 112 ADYSVWWSLGENKYAGTALFVKNCFKPVSVAFNIDNKGKDAQRHEIDGRIILAEFGSFTL 171
Query: 178 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFF 237
LNTYAPNNGWKEEEN F RRR WDK++ EFV CS KPLIWCGDLNVSH+EIDV+HPEFF
Sbjct: 172 LNTYAPNNGWKEEENGFVRRRAWDKKVLEFVSSCS-KPLIWCGDLNVSHQEIDVTHPEFF 230
Query: 238 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
A A GY PPNKED GQPGFT+ ER RF AIL
Sbjct: 231 ANATQPGYTPPNKEDAGQPGFTLNERARFSAIL 263
>gi|302824275|ref|XP_002993782.1| hypothetical protein SELMODRAFT_137611 [Selaginella moellendorffii]
gi|300138378|gb|EFJ05148.1| hypothetical protein SELMODRAFT_137611 [Selaginella moellendorffii]
Length = 351
Score = 336 bits (861), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 162/273 (59%), Positives = 203/273 (74%), Gaps = 13/273 (4%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFF+P+E++ ++KKP+++ + + EN+ DP +F++WNANSLLLR KNN
Sbjct: 1 MKRFFQPVERDGASKKPSIAIA---------NGGENACADPSRFMSWNANSLLLRFKNNR 51
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
E +FI FDPDVI +QEVR+PAAG K KN E+KDD+ A+R +K +MR LS P
Sbjct: 52 EEVMSFIRGFDPDVICIQEVRLPAAGFKGEKKNPGEIKDDSAAARNDKQAVMRVLSVSPM 111
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE---KTALKYEPDGRVILAEFETFYL 177
+Y +WWSL ++KYAGTAL VK CF+P V+F+++ K A ++E DGR+ILAEF +F L
Sbjct: 112 ADYSVWWSLGENKYAGTALFVKNCFKPVSVAFNIDNKGKDAQRHEIDGRIILAEFGSFTL 171
Query: 178 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFF 237
LNTYAPNNGWKEEEN F RRR WDK++ EFV CS KPLIWCGDLNVSH+EIDV+HPEFF
Sbjct: 172 LNTYAPNNGWKEEENGFVRRRAWDKKVLEFVSSCS-KPLIWCGDLNVSHQEIDVTHPEFF 230
Query: 238 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
A A GY PPNKED GQPGFT+ ER RF IL
Sbjct: 231 ANATQPGYTPPNKEDAGQPGFTLNERARFSTIL 263
>gi|168031629|ref|XP_001768323.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680501|gb|EDQ66937.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 369
Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 155/270 (57%), Positives = 197/270 (72%), Gaps = 3/270 (1%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFFK I +E S K+ L+ S+ + T + E++ K++P KF++WN NS LLR+K N
Sbjct: 1 MKRFFKSIGREGSFKR--LATSRGEDGTPTCAREDSEKREPTKFMSWNTNSFLLRLKTNR 58
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
E + + DPDVIA+QEVR+P+AG K P+NH ELKDDT ++RE+K I+MRALS P
Sbjct: 59 EEVLSLLRRLDPDVIAIQEVRIPSAGRKGEPRNHGELKDDTNSAREDKQIMMRALSVSPL 118
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 180
+Y +WWSL+DSKY GTALLVK P + +SL+ LK+E DGRVILAEF +F LLNT
Sbjct: 119 SDYGVWWSLSDSKYGGTALLVKHSCSPISILYSLDD-KLKHEADGRVILAEFHSFRLLNT 177
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
Y PNN WK+++N F RRR WD R+ EF+ + KPLIWCGDLNVS+E IDVSHP+FF+ A
Sbjct: 178 YVPNNSWKDDDNGFARRRAWDARMIEFLKRPHKKPLIWCGDLNVSNEVIDVSHPDFFSNA 237
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KL GY PPN ED GQPGFT+ ER+RF L
Sbjct: 238 KLQGYTPPNAEDIGQPGFTLGERQRFAECL 267
>gi|46200513|gb|AAL73527.2|AF466200_6 putative AP endonuclease [Sorghum bicolor]
Length = 348
Score = 320 bits (821), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 160/278 (57%), Positives = 197/278 (70%), Gaps = 41/278 (14%)
Query: 1 MKRFFKPIEKECS--------AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSL 52
MKRFF+P+ K+ S A +P P+ G T E ++P KF+TWNANSL
Sbjct: 1 MKRFFQPVAKDGSPSKKRQAAAAEPEGGPASA-GAATGGDGEGRPAEEPRKFLTWNANSL 59
Query: 53 LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILM 112
LLR+K++WP FS + DPDVI +Q +++
Sbjct: 60 LLRMKSDWPAFSQLVARLDPDVICVQ-------------------------------VVL 88
Query: 113 RALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 172
RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T+ K+E DGRVI+AEF
Sbjct: 89 RALSTSPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHETDGRVIIAEF 148
Query: 173 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVS 232
E+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KPLIWCGDLNVSHEEIDVS
Sbjct: 149 ESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFV-QHVDKPLIWCGDLNVSHEEIDVS 207
Query: 233 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
HP+FF++AKLNGY PPN+ED GQPGFT AER+RFG IL
Sbjct: 208 HPDFFSSAKLNGYTPPNQEDCGQPGFTPAERRRFGNIL 245
>gi|326511341|dbj|BAJ87684.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/189 (72%), Positives = 163/189 (86%), Gaps = 5/189 (2%)
Query: 88 KDAPKNHQ----ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKK 143
+ PK HQ ELKDDT +SREEK I++RALSS PFK+Y++WWSL+DSKYAGTA+ +KK
Sbjct: 28 QQVPKGHQKNPSELKDDTTSSREEKQIVLRALSSSPFKDYRVWWSLSDSKYAGTAVFMKK 87
Query: 144 CFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR 203
F+PKKVSF+L++T+ K++ DGRVI+ EFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR
Sbjct: 88 KFEPKKVSFNLDRTSSKHDADGRVIIVEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKR 147
Query: 204 IQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 263
+ EFV Q KPLIWCGDLNVSH EIDVSHP+FF+ AKLNGY+PPNKED GQPGFT+AER
Sbjct: 148 MLEFVQQVD-KPLIWCGDLNVSHGEIDVSHPDFFSDAKLNGYIPPNKEDCGQPGFTLAER 206
Query: 264 KRFGAILKE 272
+RFG IL +
Sbjct: 207 QRFGNILSQ 215
>gi|195620344|gb|ACG32002.1| hypothetical protein [Zea mays]
Length = 207
Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 108/198 (54%), Positives = 146/198 (73%), Gaps = 10/198 (5%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKK--DGETTETSS-------EENSKKDPLKFVTWNANS 51
MKRFF+P+ K+ S K L+ + + DG T+ ++ E ++P KF+TWNANS
Sbjct: 1 MKRFFQPVPKDGSPSKKRLAGAAEPGDGPTSAGAATGAGGDVEGRPTEEPFKFLTWNANS 60
Query: 52 LLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111
LLLR+K++WP FS + DPDVI +QEVRMPAAGSK APKN ELKDDT SR+EK ++
Sbjct: 61 LLLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSLSRDEKQVV 120
Query: 112 MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAE 171
+RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T+ K+E DGRVI+AE
Sbjct: 121 LRALSASPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHEADGRVIIAE 180
Query: 172 FETFYLLNTYAPNNGWKE 189
FE+F L + + W E
Sbjct: 181 FESF-LFTEHLFSKQWME 197
>gi|194699264|gb|ACF83716.1| unknown [Zea mays]
gi|413917520|gb|AFW57452.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 166
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/166 (56%), Positives = 125/166 (75%), Gaps = 9/166 (5%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKK--DGETTETSS-------EENSKKDPLKFVTWNANS 51
MKRFF+P+ K+ S K L+ + + DG T+ ++ E ++P KF+TWNANS
Sbjct: 1 MKRFFQPVPKDGSPSKKRLAGAAEPGDGPTSAGAATGAGGDVEGRPTEEPFKFLTWNANS 60
Query: 52 LLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111
LLLR+K++WP FS + DPDVI +QEVRMPAAGSK APKN ELKDDT SR+EK ++
Sbjct: 61 LLLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSLSRDEKQVV 120
Query: 112 MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT 157
+RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T
Sbjct: 121 LRALSASPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRT 166
>gi|255085372|ref|XP_002505117.1| predicted protein [Micromonas sp. RCC299]
gi|226520386|gb|ACO66375.1| predicted protein [Micromonas sp. RCC299]
Length = 418
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 162/315 (51%), Gaps = 43/315 (13%)
Query: 1 MKRFFKPIEKECS--AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLL--LRV 56
MKRFF+P + S AK P+ G T + + + + DP FVTWNANSLL LR
Sbjct: 1 MKRFFQPAVPDPSKRAKGSGDDPTGLGG-TAKGLGDNDKRSDPRSFVTWNANSLLGRLRK 59
Query: 57 KNNWPEFSNFITTFD-PDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRAL 115
+ + ++ D PDVI +QE +PAA AP LKDDTKA+RE+ ++ L
Sbjct: 60 QPDKDALFEYLREKDLPDVICVQETWLPAA----APNRRGTLKDDTKAAREDAALIHLCL 115
Query: 116 SSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT----ALKYEPDGRVILAE 171
P Y+ +WS AD K AG A+LVKK V SL + +GRV+L E
Sbjct: 116 RQKPLSAYRPYWSCADVKRAGCAVLVKKDVDVVSVRRSLTASNGANGDVAHDEGRVLLLE 175
Query: 172 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG------------------ 213
F +F LLNTYA NNGW +E SF +RR+WD + F+ +
Sbjct: 176 FRSFVLLNTYAQNNGWTQE--SFAKRRRWDAEVHAFIAGNTAGATPRPRFDDSDLNATSR 233
Query: 214 --KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY-------VPPNKEDWGQPGFTIAERK 264
KPL+W GDLNV H+EIDV+HP FFA K G P + D GQPGFT ER
Sbjct: 234 RFKPLMWTGDLNVCHKEIDVTHPRFFATQKPEGRKGKPPPETPTDPGDCGQPGFTRNERT 293
Query: 265 RFGAILKEYLIFLCF 279
RF ++ + + +
Sbjct: 294 RFERLVTAHALVDAY 308
>gi|221481831|gb|EEE20201.1| ap endonuclease, putative [Toxoplasma gondii GT1]
Length = 630
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/298 (37%), Positives = 166/298 (55%), Gaps = 39/298 (13%)
Query: 19 LSPSKKDGETTETS-------SEENSKKDPLKFVTWNANSLLLRVKNN--WPEFSNFITT 69
L+PS++ ET E +E +K PL VTWN NS+ R++++ W FS F+
Sbjct: 171 LNPSRETRETEEDGEGELERRTEGPKRKAPLSIVTWNVNSIAARIRDSRQWFYFSRFLQK 230
Query: 70 FDPDVIALQEVRMPAAGSKDA------PKNHQELKDDTKASREEKLILMRALSSPPFKNY 123
DPD++ LQEV++ A G A P++H +KD K S E L AL + N+
Sbjct: 231 IDPDILCLQEVKLAAHGPPGAKRGDGMPRDHGRIKDSDKVSSVEARELREALHTL-LPNH 289
Query: 124 QIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT---ALKYEPDGRVILAEFETFYLLNT 180
+ SLAD +Y+G + ++K Q + ++L A +++ +GRVILAEFE F +L T
Sbjct: 290 SLLISLADWRYSGQMMFIRKDVQVCSLRYNLSLDGCPAHEHDFEGRVILAEFEAFCVLTT 349
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-------------KPLIWCGDLNVSHE 227
Y+PNNG + SF+RRR WD+R+ +FV QCS KPL+W GDLN + E
Sbjct: 350 YSPNNGATPK--SFERRRLWDERMLQFVTQCSSSPHCEGLPVQLLKKPLVWVGDLNCAPE 407
Query: 228 EIDVSHPEFFAAA---KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
+ID+S P+ F + +G + P+ + GQ G T AER+RF AIL+ + F EL
Sbjct: 408 DIDLSDPDQFRSVIHETADGTIDPD--NIGQAGCTDAERRRFRAILERGNLVDAFREL 463
>gi|237843341|ref|XP_002370968.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Toxoplasma
gondii ME49]
gi|211968632|gb|EEB03828.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Toxoplasma
gondii ME49]
gi|221502330|gb|EEE28063.1| ap endonuclease, putative [Toxoplasma gondii VEG]
Length = 630
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/298 (37%), Positives = 166/298 (55%), Gaps = 39/298 (13%)
Query: 19 LSPSKKDGETTETS-------SEENSKKDPLKFVTWNANSLLLRVKNN--WPEFSNFITT 69
L+PS++ ET E +E +K PL VTWN NS+ R++++ W FS F+
Sbjct: 171 LNPSRETRETEEDGEGELERRTEGPKRKAPLSIVTWNVNSIAARIRDSRQWFYFSRFLQK 230
Query: 70 FDPDVIALQEVRMPAAGSKDA------PKNHQELKDDTKASREEKLILMRALSSPPFKNY 123
DPD++ LQEV++ A G A P++H +KD K S E L AL + N+
Sbjct: 231 IDPDILCLQEVKLAAHGPPGAKRGDGMPRDHGRIKDSDKVSSVEARELREALHTL-LPNH 289
Query: 124 QIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT---ALKYEPDGRVILAEFETFYLLNT 180
+ SLAD +Y+G + ++K Q + ++L A +++ +GRVILAEFE F +L T
Sbjct: 290 SLLISLADWRYSGQMMFIRKDVQVCSLRYNLSLDGCPAHEHDFEGRVILAEFEAFCVLTT 349
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-------------KPLIWCGDLNVSHE 227
Y+PNNG + SF+RRR WD+R+ +FV QCS KPL+W GDLN + E
Sbjct: 350 YSPNNGATPK--SFERRRLWDERMLQFVTQCSSSPHCEGLPVQLLKKPLVWVGDLNCAPE 407
Query: 228 EIDVSHPEFFAAA---KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
+ID+S P+ F + +G + P+ + GQ G T AER+RF AIL+ + F EL
Sbjct: 408 DIDLSDPDQFRSVIHETADGTIDPD--NIGQAGCTDAERRRFRAILERGNLVDAFREL 463
>gi|310893421|gb|ADP37706.1| AP endonuclease ExoIII [Toxoplasma gondii]
Length = 513
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/285 (38%), Positives = 164/285 (57%), Gaps = 27/285 (9%)
Query: 19 LSPSKKDGETTETS-------SEENSKKDPLKFVTWNANSLLLRVKNN--WPEFSNFITT 69
L+PS++ ET E +E +K PL VTWN NS+ R++++ W FS F+
Sbjct: 68 LNPSRETRETEEDGEGELERRTEGPKRKAPLSIVTWNVNSIAARIRDSRQWFYFSRFLQK 127
Query: 70 FDPDVIALQEVRMPAAGSKDA------PKNHQELKDDTKASREEKLILMRALSSPPFKNY 123
DPD++ LQEV++ A G A P++H +KD K S E L AL + N+
Sbjct: 128 IDPDILCLQEVKLAAHGPPGAKRGDGMPRDHGRIKDSDKVSSVEARELREALHTL-LPNH 186
Query: 124 QIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT---ALKYEPDGRVILAEFETFYLLNT 180
+ SLAD +Y+G + ++K Q + ++L A +++ +GRVILAEFE F +L T
Sbjct: 187 SLLISLADWRYSGQMMFIRKDVQVCSLRYNLSLDGCPAHEHDFEGRVILAEFEAFCVLTT 246
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
Y+PNNG + SF+RRR WD+R+ +FV Q KPL+W GDLN + E+ID+S P+ F +
Sbjct: 247 YSPNNGATPK--SFERRRLWDERMLQFVTQLK-KPLVWVGDLNCAPEDIDLSDPDQFRSV 303
Query: 241 ---KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
+G + P+ + GQ G T AER+RF AIL+ + F EL
Sbjct: 304 IHETADGTIDPD--NIGQAGCTDAERRRFRAILERGNLVDAFREL 346
>gi|428171338|gb|EKX40256.1| hypothetical protein GUITHDRAFT_75737 [Guillardia theta CCMP2712]
Length = 304
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 108/267 (40%), Positives = 156/267 (58%), Gaps = 30/267 (11%)
Query: 32 SSEENSKKDPLKFVTWNANSLLLRVKN--NWPEFSNFITTFDPDVIALQEVRMPAA---G 86
+S +S + P F++WNANSL+ R K N F + + +PDVIALQEVRM A+ G
Sbjct: 31 TSSASSGRLPRSFLSWNANSLVNRCKEEENMRGFCDLVLKLEPDVIALQEVRMVASAPPG 90
Query: 87 SKDAP---KNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKK 143
SK ++ +D+ K +EE ++ AL P NY + WSLAD +YAGTAL+++K
Sbjct: 91 SKRGDGRKRDRGSPRDNEKECKEELELVASALRKEPLSNYVVRWSLADWRYAGTALMIRK 150
Query: 144 CFQPKKVSFSLE-KTALKYEPDGRVILAEF-----ETFYLLNTYAPNNGWKEEENSFQRR 197
+ K VSF +++ +GRV +A+F + ++NTYAPNNGWKEE N F +R
Sbjct: 151 GIR-KPVSFHYNLDLGQEHDENGRVCMAKFVKDDGKELLVVNTYAPNNGWKEESN-FAKR 208
Query: 198 RKWDKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 255
R+WD R+ FV C G + W GD+NV+H++ DV+HP+FF + D GQ
Sbjct: 209 REWDTRLLSFVRTCRERGMEVAWVGDMNVAHKDCDVTHPDFF------------RGDAGQ 256
Query: 256 PGFTIAERKRFGAILKEYLIFLCFYEL 282
PGFT E++RF +L+E + F L
Sbjct: 257 PGFTANEQERFSQVLEEGSLVDAFRLL 283
>gi|124504779|ref|XP_001351132.1| AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase),
putative [Plasmodium falciparum 3D7]
gi|15375379|emb|CAB39006.2| AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase),
putative [Plasmodium falciparum 3D7]
Length = 617
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/255 (40%), Positives = 144/255 (56%), Gaps = 26/255 (10%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAG------- 86
N K D VTWN NS+ +R KN W EF NF + DV+ QEVR+PA
Sbjct: 272 NIKNDVKIIVTWNMNSITVRYKNKKKWDEFMNFFNNLNADVLCFQEVRLPAMNLSEPCDN 331
Query: 87 ------SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALL 140
D ++ ++K+ + S + I+ + L+ FK+Y ++SLA+ KY+G +L
Sbjct: 332 KNKNKNKNDGIRDRGKIKNSDQKSLADYEIMEQILNDD-FKDYNAYFSLANIKYSGQLVL 390
Query: 141 VKKCFQPKKVSFSL--EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 198
VKK + + ++L E A + +GRVIL EF F+LL+TY PNNG+ + F+RRR
Sbjct: 391 VKKNIHIESIRYNLFFENNAHIHHDEGRVILVEFSNFFLLSTYTPNNGF--DHVKFERRR 448
Query: 199 KWDKRIQEFVLQCSG---KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 255
+D+++Q+FV KPL+W GDLN++ E+ID+SHP F K G VP KE GQ
Sbjct: 449 LFDEQLQKFVTILRNEKQKPLVWTGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFIGQ 505
Query: 256 PGFTIAERKRFGAIL 270
PG T ERK F IL
Sbjct: 506 PGCTDFERKNFQKIL 520
>gi|156094081|ref|XP_001613078.1| AP endonuclease [Plasmodium vivax Sal-1]
gi|148801952|gb|EDL43351.1| AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase),
putative [Plasmodium vivax]
Length = 535
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 149/252 (59%), Gaps = 18/252 (7%)
Query: 44 FVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPA------AGSKDAPKNHQ 95
VTWN NS+ +R KN W F +F + DV+ QEVR+PA SK+ ++
Sbjct: 168 IVTWNMNSITVRYKNKDKWNAFMSFFNRINADVLCFQEVRLPALNLCAVKNSKEGKRDRG 227
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
++K+ + S+ + I+ + L F NY ++SLA+ KY+G +L+K+ K + ++L
Sbjct: 228 KVKNTDQKSQVDFDIMSKILKKD-FHNYNAYFSLANIKYSGQLVLIKRNIPVKSIRYNLR 286
Query: 156 KTA--LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQC 211
A ++ +GRVI+AEF FYLL+TY PNNG+ + F+RRR +D+++++FV L+
Sbjct: 287 LDADPSEHHEEGRVIIAEFSKFYLLSTYTPNNGF--DTVKFERRRLFDEQLKKFVSHLRN 344
Query: 212 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GK LIW GDLN++ E+ID+SHP F K G VP KE GQPG T ERK F IL
Sbjct: 345 MGKNLIWTGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFVGQPGCTDFERKNFMGILS 401
Query: 272 EYLIFLCFYELA 283
+ + +LA
Sbjct: 402 AGDLVDSYRQLA 413
>gi|14578320|gb|AAF99486.1| PV1H14200_P [Plasmodium vivax]
Length = 540
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 149/252 (59%), Gaps = 18/252 (7%)
Query: 44 FVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPA------AGSKDAPKNHQ 95
VTWN NS+ +R KN W F +F + DV+ QEVR+PA SK+ ++
Sbjct: 168 IVTWNMNSITVRYKNKDKWNAFMSFFNRINADVLCFQEVRLPALNLCAVKNSKEGKRDRG 227
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
++K+ + S+ + I+ + L F NY ++SLA+ KY+G +L+K+ K + ++L
Sbjct: 228 KVKNTDQKSQVDFDIMSKILKKD-FHNYNAYFSLANIKYSGQLVLIKRNIPVKSIRYNLR 286
Query: 156 KTA--LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQC 211
A ++ +GRVI+AEF FYLL+TY PNNG+ + F+RRR +D+++++FV L+
Sbjct: 287 LDADPSEHHEEGRVIIAEFSKFYLLSTYTPNNGF--DTVKFERRRLFDEQLKKFVSHLRN 344
Query: 212 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GK LIW GDLN++ E+ID+SHP F K G VP KE GQPG T ERK F IL
Sbjct: 345 MGKNLIWTGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFVGQPGCTDFERKNFMGILS 401
Query: 272 EYLIFLCFYELA 283
+ + +LA
Sbjct: 402 AGDLVDSYRQLA 413
>gi|401412245|ref|XP_003885570.1| hypothetical protein NCLIV_059670 [Neospora caninum Liverpool]
gi|325119989|emb|CBZ55542.1| hypothetical protein NCLIV_059670 [Neospora caninum Liverpool]
Length = 455
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 152/279 (54%), Gaps = 42/279 (15%)
Query: 12 CSAKKPALSPSKKDGETTETSS--------EENSKKDPLKFVTWNANSLLLRVKNN--WP 61
CS P+ P K+G+ + + +E + PL VTWN NS+ R+++ W
Sbjct: 61 CSEASPSDGPQAKEGQQRKNAEAEREREKRQEQKRTAPLSIVTWNVNSIASRIRDTRQWF 120
Query: 62 EFSNFITTFDPDVIALQEVRMPAAGSKDA------PKNHQELKDDTKASREEKLILMRAL 115
FS+F+ +PD++ LQEV++ A G A P++ +K+ K S E + AL
Sbjct: 121 YFSSFLQKVNPDILCLQEVKLAAHGPPGAKRGDGMPRDRSRIKESDKVSSVEAREIREAL 180
Query: 116 SSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 175
++ ++++ SLAD +Y+G + ++ P+GR+ILAEF F
Sbjct: 181 NTL-LPDHKLLISLADWRYSGQMMFIRNDL-----------------PEGRIILAEFSPF 222
Query: 176 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPE 235
+L TY+PNNG + SF+RRR WD+R+ EFV Q KPL+W GDLN + E+ID+S PE
Sbjct: 223 CVLTTYSPNNGGTPK--SFERRRLWDERMLEFVTQLK-KPLVWVGDLNCAPEDIDLSDPE 279
Query: 236 FFAAA---KLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
F + +G + P+ + GQ G T AER+RF AIL+
Sbjct: 280 QFRSVIHESADGTIDPD--NIGQAGCTDAERRRFRAILE 316
>gi|389583540|dbj|GAB66275.1| AP endonuclease, partial [Plasmodium cynomolgi strain B]
Length = 389
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 154/269 (57%), Gaps = 19/269 (7%)
Query: 31 TSSEENSKKDPLK-FVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAA-- 85
T E K++ +K VTWN NS+ +R KN W F +F + DV+ QEVR+PA
Sbjct: 17 TQQGETKKEEEVKTIVTWNMNSITVRYKNKEKWNAFMSFFNRINADVLCFQEVRLPAMNL 76
Query: 86 ----GSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 141
+KD ++ +K+ + S+ + +M + F NY ++SLA+ KY+G +L+
Sbjct: 77 DNVKNAKDGKRDRGRVKNTDQKSQVD-FEIMEQILKKDFHNYNAYFSLANIKYSGQLVLI 135
Query: 142 KKCFQPKKVSFSLEKTA--LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 199
K+ K + ++L A ++ +GRVI+AEF F+LL+TY PNNG+ + F+RRR
Sbjct: 136 KRSIPVKSIRYNLSFDADPSEHHEEGRVIVAEFSNFFLLSTYTPNNGF--DLIKFERRRL 193
Query: 200 WDKRIQEF--VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPG 257
+D++++EF VL+ K LIW GDLN++ E+ID+SHP F K G VP KE GQPG
Sbjct: 194 FDEQLKEFVSVLKNKKKNLIWTGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFVGQPG 250
Query: 258 FTIAERKRFGAILKEYLIFLCFYELAVMK 286
T ERK F IL + + LA ++
Sbjct: 251 CTDFERKNFRGILSAGDLIDSYRHLAKLR 279
>gi|70954382|ref|XP_746240.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase)
[Plasmodium chabaudi chabaudi]
gi|56526785|emb|CAH87963.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase),
putative [Plasmodium chabaudi chabaudi]
Length = 350
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 143/258 (55%), Gaps = 38/258 (14%)
Query: 44 FVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
VTWN NS+ +R KN W +F F+ + DV+ QEVR+PA + PKN + +D
Sbjct: 8 IVTWNMNSITVRYKNKDKWKKFIKFVNEINADVLCFQEVRLPAL---NIPKNEEVKVEDN 64
Query: 102 KA---SREEKLI---------------------LMRALSSPPFKNYQIWWSLADSKYAGT 137
K + EK+I ++ + FK Y ++SLA+ KY+G
Sbjct: 65 KTYGRKKTEKIIDEERDRGSVKNTDQKSLLDYNIVEDILKKDFKEYNAYFSLANIKYSGQ 124
Query: 138 ALLVKKCFQPKKVSFSL--EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQ 195
+LVKK + K V ++L + + +GR+IL EF FYLL+TY+PNNG+ + F+
Sbjct: 125 LVLVKKTIEVKSVRYNLSFDTNPNIHNDEGRIILLEFSNFYLLSTYSPNNGF--DAPKFE 182
Query: 196 RRRKWDKRIQEFVL--QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW 253
RRR +D ++EFVL + K LIW GDLN++ E+ID+SHP F K G VP KE
Sbjct: 183 RRRLFDDSMKEFVLFMKKENKNLIWTGDLNIAPEDIDLSHPIEFRKMK-KGNVP--KEYI 239
Query: 254 GQPGFTIAERKRFGAILK 271
GQPG T AERK F ILK
Sbjct: 240 GQPGCTDAERKNFKTILK 257
>gi|221055699|ref|XP_002258988.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase)
[Plasmodium knowlesi strain H]
gi|193809058|emb|CAQ39761.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase),
putative [Plasmodium knowlesi strain H]
Length = 516
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 146/255 (57%), Gaps = 18/255 (7%)
Query: 44 FVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAG------SKDAPKNHQ 95
VTWN NS+ +R KN W F +F + DV+ QEVR+PA +KD ++
Sbjct: 184 IVTWNMNSITVRYKNKEKWNAFMSFFNRINADVLCFQEVRLPALNLYDAKEAKDGERDRG 243
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL- 154
++K+ + S+ + +M + F NY ++SLA+ KY+G +LVK+ K + ++L
Sbjct: 244 KVKNTDQKSQVD-FDIMEKILKEDFHNYNAYFSLANIKYSGQLVLVKRSIPIKSIRYNLS 302
Query: 155 -EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQC 211
+ ++ +GRVI+ EF FYLL+TY PNNG+ E F+RRR +D++++EF VL+
Sbjct: 303 FDLDPREHHHEGRVIIVEFSKFYLLSTYTPNNGF--EPVKFERRRLFDEKLKEFVSVLRN 360
Query: 212 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
K L+W GDLN++ E+ D+SHP F K G VP KE GQPG T ERK F IL
Sbjct: 361 KKKNLVWTGDLNIAPEDTDLSHPAEFRRMK-KGNVP--KEFVGQPGCTDFERKNFRGILS 417
Query: 272 EYLIFLCFYELAVMK 286
+ + LA ++
Sbjct: 418 AGDLIDSYRHLANLR 432
>gi|83314890|ref|XP_730557.1| AP endonuclease-related [Plasmodium yoelii yoelii 17XNL]
gi|23490314|gb|EAA22122.1| putative AP endonuclease-related [Plasmodium yoelii yoelii]
Length = 554
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 102/256 (39%), Positives = 145/256 (56%), Gaps = 33/256 (12%)
Query: 44 FVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPA-----AGSKDAPKN--H 94
VTWN NS+ +R KN W F F+ + DV+ QEVR+PA G K+ KN
Sbjct: 211 IVTWNMNSITVRYKNREKWKRFIKFVNEINADVLCFQEVRLPALNVPKNGVKNGVKNGVK 270
Query: 95 QELKDDTKASREEK---LI------------LMRALSSPPFKNYQIWWSLADSKYAGTAL 139
+K++ K EE+ L+ ++ + FK Y ++SLA+ KY+G +
Sbjct: 271 NGVKNEVKNEDEERERGLVKNTDQKSMIDYKIVEDILKNDFKEYNSYFSLANIKYSGQLV 330
Query: 140 LVKKCFQPKKVSFSL--EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 197
LVKK + K V ++L E + +GR+IL EF FYLL+TY+PNNG+ ++ F RR
Sbjct: 331 LVKKDIKVKSVRYNLLFETDPNIHNDEGRIILLEFSNFYLLSTYSPNNGF--DQIKFNRR 388
Query: 198 RKWDKRIQEFVL--QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 255
+ +D++++ FVL + K LIW GDLN++ E+ID+SHP F K G VP KE GQ
Sbjct: 389 KLYDEQMKNFVLFMKNENKNLIWTGDLNIAPEDIDLSHPIEFRKMK-KGNVP--KEYIGQ 445
Query: 256 PGFTIAERKRFGAILK 271
PG T AER+ F ILK
Sbjct: 446 PGCTDAERENFKTILK 461
>gi|68063675|ref|XP_673834.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase)
[Plasmodium berghei strain ANKA]
gi|68070845|ref|XP_677336.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56491972|emb|CAI02361.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase),
putative [Plasmodium berghei]
gi|56497413|emb|CAH98029.1| hypothetical protein PB000718.02.0 [Plasmodium berghei]
Length = 346
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 101/257 (39%), Positives = 145/257 (56%), Gaps = 28/257 (10%)
Query: 38 KKDPLKFVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKN- 93
+K+ VTWN NS+ +R KN W F F+ + DV+ QEVR+PA SK+ KN
Sbjct: 2 RKNVNVIVTWNMNSITVRYKNKEKWKRFMKFVNEINADVLCFQEVRLPALNISKNESKNV 61
Query: 94 ------------HQELKDDTKASREEKLI---LMRALSSPPFKNYQIWWSLADSKYAGTA 138
+ + K + ++ LI ++ + FK Y ++SLA+ KY+G
Sbjct: 62 NNKVYGGKKNEGEERNRGSVKNTDQKSLIDYKIVEEILKNDFKEYNGYFSLANIKYSGQL 121
Query: 139 LLVKKCFQPKKVSFSL--EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR 196
+LVKK + K V ++L E + +GR+IL EF FYLL+TY+PNNG+ ++ F+R
Sbjct: 122 VLVKKSIKVKSVRYNLLFETDPNIHNDEGRIILLEFSNFYLLSTYSPNNGF--DQTKFKR 179
Query: 197 RRKWDKRIQEFVL--QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWG 254
R +D +++EFVL + K LIW GDLN++ E++D+SHP F K G VP KE G
Sbjct: 180 RSLFDNQMKEFVLFMKNENKNLIWTGDLNIAPEDVDLSHPIEFRKMK-KGNVP--KEYIG 236
Query: 255 QPGFTIAERKRFGAILK 271
QPG T AER F ILK
Sbjct: 237 QPGCTDAERANFKTILK 253
>gi|298710453|emb|CBJ25517.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 411
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 136/256 (53%), Gaps = 34/256 (13%)
Query: 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG------SKDAPKNH 94
P VT+N N R+ NW E F+ PD++ QEVR+PA G D +
Sbjct: 68 PRTIVTFNLNGASPRLAKNWNEIKGFLEEHKPDLVCFQEVRLPAKGVPKAKKEDDTGRKR 127
Query: 95 QELKDDTKASREEKLILMRALSSPPFK-NYQIWWSLADSKYAGTALLVKK-----CFQPK 148
+LKDDT A R++ ++ R L + + Y++ SLA+SKYAGTA L+ P
Sbjct: 128 WQLKDDTAADRKDIALVDRTLRALARRLGYRLVMSLANSKYAGTAALISTWGAVFAITPV 187
Query: 149 KVSFS-------------LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQ 195
++F+ L K +++ +GRVI E+ + +L Y PNNG K E SFQ
Sbjct: 188 TIAFAGRLGLSALDLPEPLGKLFKEHDREGRVIAIEYPSVTVLALYVPNNGSKAE--SFQ 245
Query: 196 RRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP-PNKEDWG 254
RRR+WD + FV + SGK LI GDLNV+HE+ D++H FF G P N ED G
Sbjct: 246 RRRRWDDELCGFVDKYSGK-LIITGDLNVAHEDADLTHASFF-----KGMFPAANPEDSG 299
Query: 255 QPGFTIAERKRFGAIL 270
QPG T AE++R +L
Sbjct: 300 QPGCTPAEKRRHSRLL 315
>gi|145351399|ref|XP_001420068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580301|gb|ABO98361.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 371
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 131/264 (49%), Gaps = 44/264 (16%)
Query: 28 TTETSSEENSKKDPLKFVTWNANSLLLRVKNN----------WPEFSNFITTFDPDVIAL 77
T E +SE PL F +WNAN LL R+++ S + PDVIAL
Sbjct: 6 TVEDASE------PLSFASWNANGLLNRIRDKSDPNGRRTRALLALSENVMRKRPDVIAL 59
Query: 78 QEV--RMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYA 135
QEV + G +H ++ + K R+EK + + PFKNY ++ LA+++ A
Sbjct: 60 QEVWLKCEEMGKGTGKWDHAKMGAEDKKLRDEKAFIEALMGRRPFKNYDAYYCLANARRA 119
Query: 136 GTALLVKKCF-QPKKVSFSLEKTALKYEPD------GRVILAEFETFYLLNTYAPNNGWK 188
G +VKKC +P +V+ +L PD GRV++ E+E +LNTY P+NG
Sbjct: 120 GVITMVKKCLAKPIRVARTLALDGRDVTPDEIDTNEGRVLMLEYEKMIVLNTYVPHNGSN 179
Query: 189 EEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVS-HPEFFAAAKLNGYV 246
E +++R WD R+Q F+ G K ++W GDLNV+H++ DV P F
Sbjct: 180 AER--YEKRALWDFRVQRFLENYRGKKDVVWMGDLNVAHQDHDVGPSPRLFE-------- 229
Query: 247 PPNKEDWGQPGFTIAERKRFGAIL 270
G GFT+ ER+RF IL
Sbjct: 230 -------GVGGFTLPERRRFTDIL 246
>gi|323450905|gb|EGB06784.1| hypothetical protein AURANDRAFT_71945 [Aureococcus anophagefferens]
Length = 1309
Score = 125 bits (315), Expect = 2e-26, Method: Composition-based stats.
Identities = 92/273 (33%), Positives = 140/273 (51%), Gaps = 41/273 (15%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPA---AGSKD---AP 91
+ DP + WN +L R N E +F+ DV+ L EV++ A G+K AP
Sbjct: 24 RGDPRTIICWNVENLKSRATQNRREVRDFLGACGADVVFLSEVKLAAHCDKGAKKGDGAP 83
Query: 92 KNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKK-CFQPKKV 150
+N + + D ++K+ L PF +SLAD +YAGT L++ P++V
Sbjct: 84 RNRRRVNDKF---HDDKVQCAALLDVGPFA--APIYSLADWRYAGTCCLLRSDGPAPRRV 138
Query: 151 SFSLEKT-----------ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 199
SFSLE A ++PDGRVI+ E+ET +L+TY+PNNG + SF+RRR
Sbjct: 139 SFSLEPPDAPPARNSVAFADDHDPDGRVIVLEYETLVVLHTYSPNNG--NDAKSFERRRL 196
Query: 200 WDKRIQEF--VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNK------- 250
W+ +++ F ++ G+ L++ GDLN + + D+SHP +F A N P K
Sbjct: 197 WEAKVRAFAEAVRVRGRSLVYVGDLNCAPTDDDLSHPAWFRAWNSN---QPGKRLGKDRE 253
Query: 251 ----EDWGQPGFTIAERKRFGAILKEYLIFLCF 279
+D GQPG T E + F A+L+ +F F
Sbjct: 254 RLEADDEGQPGCTPRESRYFDALLRAGGLFDAF 286
>gi|303282399|ref|XP_003060491.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457962|gb|EEH55260.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 514
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 98/225 (43%), Gaps = 59/225 (26%)
Query: 115 LSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTA--LKYEPDGRVILAEF 172
+ P Y+ W+ AD + AG +LVKK K S SL + A P+GRV+ EF
Sbjct: 1 MRQKPMSRYEPHWACADKRSAGCGVLVKKHIPVKSASRSLTRRAGEASQHPEGRVLFLEF 60
Query: 173 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ----------------CSG--- 213
E LLN YA NNGWK E S +RR+WD ++ F+ C+
Sbjct: 61 ENVTLLNVYAQNNGWKPE--SMAKRRRWDAELKTFLTNDDDDDDDDDDDDDAQLCAASKD 118
Query: 214 -----------------------------KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 244
KP++W GDLN H E DV+HPEFFA K G
Sbjct: 119 ATTSNDATSKTNASSLRPRRPTRADGKGLKPIVWTGDLNACHTERDVTHPEFFALQKPEG 178
Query: 245 Y-------VPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
PP+ +D GQPGFT ER+RF I+ + + L
Sbjct: 179 KKGAPPPETPPDVDDRGQPGFTNNERRRFHDIVTSAKLVDVYRHL 223
>gi|294932897|ref|XP_002780496.1| ap endonuclease, putative [Perkinsus marinus ATCC 50983]
gi|239890430|gb|EER12291.1| ap endonuclease, putative [Perkinsus marinus ATCC 50983]
Length = 395
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 145/279 (51%), Gaps = 33/279 (11%)
Query: 4 FFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN--NWP 61
FFK +E + K P ++ + ET ++ + WNA+SLL R+KN
Sbjct: 10 FFKKVENPKATKIPKVTVVSRVPET-------------IRLMAWNADSLLNRIKNKETAK 56
Query: 62 EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121
E + + D +V+ + EVRM A S + + + A R+ L++ F
Sbjct: 57 EIAKVVKDHDVNVLCVCEVRM-ACESCSSTGAIDRVNSNQGAERD--LVVNFLTRQCGFD 113
Query: 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK----YEPDGRVILAEF--ETF 175
Q+++SL + K AG + ++K +P +V F + T + + P+GR+ILA+F E
Sbjct: 114 --QLYFSLRNIKQAGVGMFMRKMPKPDRVHFKIPGTEVGGDGFHHPEGRIILADFASENL 171
Query: 176 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIWCGDLNVSHEEIDVS- 232
LL TY PNNGW E+ SF +RR++D ++ F+ + G+ +IW GDLNV+ DV
Sbjct: 172 QLLLTYVPNNGWTED--SFAKRRRFDCEVKSFLANAKSQGERIIWLGDLNVAASWNDVGP 229
Query: 233 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
+P +F K + + +D GQPGFT AE+ RF +L+
Sbjct: 230 NPAWFRRQKQSPGL--CDDDVGQPGFTQAEQNRFAELLE 266
>gi|308808326|ref|XP_003081473.1| Apurinic/apyrimidinic endonuclease and related enzymes (ISS)
[Ostreococcus tauri]
gi|116059936|emb|CAL55995.1| Apurinic/apyrimidinic endonuclease and related enzymes (ISS)
[Ostreococcus tauri]
Length = 447
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 136/312 (43%), Gaps = 73/312 (23%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPE------ 62
EK S A + + G T E + E PL F WNA+ L ++K +
Sbjct: 33 EKTRSIDHGARAMDRAPGTTVEDAVE------PLSFFCWNADGLTRKLKRDDGRPSRAAM 86
Query: 63 -FSNFITTFDPDVIALQEV--------------------------RMPAAGSKD------ 89
I PDVIALQEV R G +
Sbjct: 87 ALREAIAKRAPDVIALQEVWLKAAGGGKEGAGTRCGRDEWRTRDERASDDGKRGRLTTTR 146
Query: 90 --APKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCF-Q 146
++H ++ D+ K E+K ++ + L PF+ Y + LA +K GT +LVKK +
Sbjct: 147 VTMGRDHTKMSDEGKVYAEDKAVMEKMLGGYPFREYDAHFCLAGAKRYGTCVLVKKALKK 206
Query: 147 PKKVSFSLEKTALKYEPD------GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 200
P +V+ +L PD GRV+L E+E +LNTY P+NG E +++R W
Sbjct: 207 PIRVARTLALDGTDASPDDIDTNEGRVLLLEYEKVIVLNTYVPHNGGNPER--WEKRAMW 264
Query: 201 DKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVS-HPEFFAAAKLNGYVPPNKEDWGQPGF 258
D R++ F+ G K +IW GDLN +H ++DV+ PE F G GF
Sbjct: 265 DFRVKRFLTHYKGKKDVIWLGDLNCAHRDLDVAPSPEQFI---------------GVGGF 309
Query: 259 TIAERKRFGAIL 270
T+ ER+RF IL
Sbjct: 310 TVPERQRFTDIL 321
>gi|194695010|gb|ACF81589.1| unknown [Zea mays]
gi|413917519|gb|AFW57451.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 161
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 57/65 (87%), Gaps = 1/65 (1%)
Query: 206 EFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKR 265
EFV Q KPLIWCGDLNVSHEEIDVSHP+FF++AKLNGY PPNKED GQPGFT AER+R
Sbjct: 3 EFV-QHVDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYTPPNKEDCGQPGFTPAERRR 61
Query: 266 FGAIL 270
FG IL
Sbjct: 62 FGNIL 66
>gi|291222020|ref|XP_002731016.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 338
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 103/196 (52%), Gaps = 38/196 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + KN E +++ DPD+ +QE + E+ DD
Sbjct: 86 IKLVSWNVNGVRAWCKN---EGHKYVSKEDPDIFTIQETKCQEG----------EVPDDV 132
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K F Y +WS A+ K YAGT L K +P V++ + K
Sbjct: 133 K-----------------FDGYHSYWSYAEEKGYAGTGLYSK--VEPISVTYGIGIN--K 171
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR I AE+E FY ++TY PN G + S+ R++WDK +E++ + KP+IWC
Sbjct: 172 HDKEGRCITAEYEKFYFISTYIPNAGKGLKRLSY--RQEWDKDFREYMKKLDEKKPIIWC 229
Query: 220 GDLNVSHEEIDVSHPE 235
GDLNV+H+EID+++P+
Sbjct: 230 GDLNVAHQEIDLTNPK 245
>gi|149180849|ref|ZP_01859351.1| exodeoxyribonuclease [Bacillus sp. SG-1]
gi|148851368|gb|EDL65516.1| exodeoxyribonuclease [Bacillus sp. SG-1]
Length = 253
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 115/236 (48%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK F +F D D+ +QE ++
Sbjct: 1 MKIVSWNVNGIRACVKKG---FMDFFKDVDADIFCIQESKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L +NY +W+ A+ K Y+GTA+ K+ +P VS+ + +
Sbjct: 39 ---QEGQIQL-------DLENYHQYWNYAERKGYSGTAVFTKQ--EPLSVSYGIGED--D 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
EP+GR I EFE FYLLN Y PN+ K + + + R W++R++ ++ + KP+I+C
Sbjct: 85 DEPEGRCITLEFEDFYLLNVYTPNS--KRDLSRLEDRLHWEERVRAYIKELDEIKPVIYC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H EID+ +P K + G GFT ER++ +L E +
Sbjct: 143 GDLNVAHNEIDLRNP---------------KSNHGNSGFTTEEREKMSTLLNEGFV 183
>gi|375309937|ref|ZP_09775215.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
gi|375077890|gb|EHS56120.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
Length = 254
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 115/243 (47%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ +PD+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETNPDIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ILM + + Y +W+ A+ K Y+GTA+ K F+P V + LE+
Sbjct: 39 ----QEGQILMENM-----EEYTQYWNYAEKKGYSGTAIFTK--FKPLSVHYGLEENG-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
EP+GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q + KP+I C
Sbjct: 86 -EPEGRTITLEFERFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRNYLQQLDASKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ + K ++G GFT ER+R +L I F
Sbjct: 143 GDLNVAHQEIDLKNA---------------KANYGNAGFTPEERERMSQLLGAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 HFY 190
>gi|13162337|ref|NP_077062.1| DNA-(apurinic or apyrimidinic site) lyase [Rattus norvegicus]
gi|1168468|sp|P43138.2|APEX1_RAT RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|11878235|gb|AAG40859.1|AF309114_1 nuclease APEX [Rattus norvegicus]
gi|624915|dbj|BAA07938.1| APEX nuclease [Rattus norvegicus]
gi|5360709|dbj|BAA82124.1| Apex nuclease [Rattus norvegicus]
gi|50926078|gb|AAH78816.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Rattus
norvegicus]
gi|149033628|gb|EDL88426.1| apurinic/apyrimidinic endonuclease 1, isoform CRA_a [Rattus
norvegicus]
Length = 317
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 133/279 (47%), Gaps = 55/279 (19%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 30 KKTEKEAAGEGPVLYEDPPDQKTSASG-----KSATLKICSWNVDGLRAWIKK---KGLD 81
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ PD++ LQE + P QEL P +Q
Sbjct: 82 WVKEEAPDILCLQETK---CSENKLPAELQEL---------------------PGLTHQY 117
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 184
W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEFE+F L+ Y PN
Sbjct: 118 WSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFESFILVTAYVPN 173
Query: 185 NGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 243
G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 174 AG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPK-------- 223
Query: 244 GYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 224 ----GNKKN---AGFTPQERQGFGEMLQAVPLADSFRHL 255
>gi|6753086|ref|NP_033817.1| DNA-(apurinic or apyrimidinic site) lyase [Mus musculus]
gi|113985|sp|P28352.2|APEX1_MOUSE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|220337|dbj|BAA14382.1| APEX nuclease precursor [Mus musculus]
gi|533108|gb|AAC13769.1| apurinic/apyrimidinic endonuclease [Mus musculus]
gi|533329|dbj|BAA07270.1| APEX nuclease [Mus musculus]
gi|12850573|dbj|BAB28774.1| unnamed protein product [Mus musculus]
gi|30851442|gb|AAH52401.1| Apurinic/apyrimidinic endonuclease 1 [Mus musculus]
gi|148688888|gb|EDL20835.1| apurinic/apyrimidinic endonuclease 1 [Mus musculus]
Length = 317
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 133/279 (47%), Gaps = 55/279 (19%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 30 KKTEKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLD 81
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ PD++ LQE + P QEL P +Q
Sbjct: 82 WVKEEAPDILCLQETK---CSENKLPAELQEL---------------------PGLTHQY 117
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 184
W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEFE+F L+ Y PN
Sbjct: 118 WSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFESFVLVTAYVPN 173
Query: 185 NGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 243
G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 174 AG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKG------- 224
Query: 244 GYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 225 -----NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 255
>gi|196233332|ref|ZP_03132177.1| exodeoxyribonuclease III Xth [Chthoniobacter flavus Ellin428]
gi|196222637|gb|EDY17162.1| exodeoxyribonuclease III Xth [Chthoniobacter flavus Ellin428]
Length = 216
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 119/231 (51%), Gaps = 53/231 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F++FI + +PD++ALQE T
Sbjct: 1 MKLISWNVNGIRAVLKKG---FTDFIESENPDILALQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA+ E+ +++ +AL+ Y +W++A+ K Y+GTA+ K K ++ +L +
Sbjct: 37 KATPED-VVVPQALAE-----YTSFWNIAEKKGYSGTAIFTK----TKPIAVTLGIGVAE 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI AE+ F+L+N Y PN+ K E R++WD+ ++ + KP+IWC
Sbjct: 87 HDREGRVITAEYADFFLVNVYVPNS--KRELTRLAYRQQWDRDFLAYLKKLELKKPVIWC 144
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H EID++ P K++ GFT ER F A +
Sbjct: 145 GDLNVAHTEIDLARP---------------KDNVKNHGFTPEERAGFDAFV 180
>gi|223278420|ref|NP_001138591.1| DNA-(apurinic or apyrimidinic site) lyase [Canis lupus familiaris]
Length = 318
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 132/276 (47%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + PAL D +T + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGPALYEDPPDQKTAPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLPHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+TF L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDTFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>gi|426376144|ref|XP_004054867.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376146|ref|XP_004054868.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376148|ref|XP_004054869.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376150|ref|XP_004054870.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
Length = 318
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 134/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +YQ W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSYQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>gi|85000047|ref|XP_954742.1| endonuclease [Theileria annulata strain Ankara]
gi|65302888|emb|CAI75266.1| endonuclease, putative [Theileria annulata]
Length = 586
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 121/253 (47%), Gaps = 32/253 (12%)
Query: 37 SKKDPLKFVTWNANSLLLRV--KNNWPEFSNFITTFDPDVIALQEVRMPAA--------- 85
S+KDP +TWN + L L K W F + DPD++ LQ+V++ ++
Sbjct: 270 SEKDPKTILTWNVSGLALSKSKKTIWESFLQILKQHDPDIVVLQDVKLCSSEILGKQPKL 329
Query: 86 -----GSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALL 140
G +P QE++D L+ L FK Y + SL+ + AG +
Sbjct: 330 SARTYGGHVSPSYAQEVQDAD---------LVNELKRTTFKKYYLVHSLSAWRIAGQLVF 380
Query: 141 VKKCFQPKKVSFSLE-KTALKYE-PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 198
VKK F+ K+ ++L K KY P+GR I+ +F +FYL++ +P GW S + R
Sbjct: 381 VKKEFECLKMRYNLNIKANAKYHHPEGRCIILQFNSFYLISLLSPVQGWI--NRSVRIRS 438
Query: 199 KWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPG 257
+WD+ + F+ S K I G LN + ++ID+S PE K V +E+ G PG
Sbjct: 439 RWDRELATFLNNSKSEKATIITGCLNCAPQDIDLSDPERLKQEK--SIVLHKQEELGFPG 496
Query: 258 FTIAERKRFGAIL 270
+R+ F +L
Sbjct: 497 SRDVDREGFKWLL 509
>gi|390455653|ref|ZP_10241181.1| exodeoxyribonuclease III [Paenibacillus peoriae KCTC 3763]
Length = 254
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 114/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ +PD+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETNPDIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ILM + + Y +W+ A+ K Y+GTA+ K +P V + LE+
Sbjct: 39 ----QEGQILMENM-----EEYTQYWNYAEKKGYSGTAIFTK--IKPLSVHYGLEENG-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
EP+GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q + KP+I C
Sbjct: 86 -EPEGRTITLEFEKFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQQLDASKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ + K ++G GFT ER+R +L I F
Sbjct: 143 GDLNVAHQEIDLKNA---------------KANYGNAGFTPEERERMSQLLGAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 HFY 190
>gi|384475785|ref|NP_001245038.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|90078218|dbj|BAE88789.1| unnamed protein product [Macaca fascicularis]
gi|355693074|gb|EHH27677.1| hypothetical protein EGK_17940 [Macaca mulatta]
gi|355767431|gb|EHH62612.1| hypothetical protein EGM_21005 [Macaca fascicularis]
gi|383417983|gb|AFH32205.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946780|gb|AFI36995.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946782|gb|AFI36996.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946784|gb|AFI36997.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
Length = 318
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 134/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL + C P KVS+ + + +++ +GRVI+AEF++F L+ TY PN G
Sbjct: 122 PSDKEGYSGVGLLSRHC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTTYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>gi|402875487|ref|XP_003901536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Papio anubis]
gi|402875489|ref|XP_003901537.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Papio anubis]
Length = 318
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 134/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL + C P KVS+ + + +++ +GRVI+AEF++F L+ TY PN G
Sbjct: 122 PSDKEGYSGVGLLSRHC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTTYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>gi|374319924|ref|YP_005073053.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
gi|357198933|gb|AET56830.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
Length = 254
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 114/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ +PD+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETNPDIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ILM + + Y +W+ A+ K Y+GTA+ K +P V + LE+
Sbjct: 39 ----QEGQILMENM-----EEYTQYWNYAEKKGYSGTAIFTK--IKPLSVHYGLEENG-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
EP+GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q + KP+I C
Sbjct: 86 -EPEGRTITLEFEKFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQQLDASKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ + K ++G GFT ER+R +L I F
Sbjct: 143 GDLNVAHQEIDLKNA---------------KANYGNAGFTPEERERMSQLLGAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 HFY 190
>gi|332263793|ref|XP_003280936.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263795|ref|XP_003280937.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263797|ref|XP_003280938.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263799|ref|XP_003280939.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|441667374|ref|XP_004091971.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
Length = 318
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 135/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KTATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ +++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEALRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>gi|380796163|gb|AFE69957.1| DNA-(apurinic or apyrimidinic site) lyase, partial [Macaca mulatta]
Length = 297
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 134/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 13 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 64
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 65 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 100
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL + C P KVS+ + + +++ +GRVI+AEF++F L+ TY PN G
Sbjct: 101 PSDKEGYSGVGLLSRHC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTTYVPNAG- 155
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 156 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 204
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 205 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 235
>gi|330843681|ref|XP_003293776.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
gi|325075853|gb|EGC29694.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
Length = 249
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 115/236 (48%), Gaps = 51/236 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN + FS+++ +PD++ LQE ++
Sbjct: 1 LKVISWNVAGFRSVLTKG---FSDYVVKENPDILCLQETKI------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKTALK 160
K + +K SS P Y+ + AD + + GT LL K +P + F + K
Sbjct: 39 KPTEVQK-------SSIP-SGYEYHFVSADQAGHHGTGLLTK--LKPLSLKFGI--GIAK 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI AE++ FYL+NTY PN+G + +N R ++WD Q+++++ KP++WC
Sbjct: 87 HDTEGRVITAEYDDFYLVNTYIPNSGSRGLKNLDYRIKEWDVDFQKYLVELDKKKPVVWC 146
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H EID+ +P K + GFTI ER FG L + I
Sbjct: 147 GDLNVAHTEIDLKNP---------------KTNTKSAGFTIQERTSFGDFLNKGFI 187
>gi|444522078|gb|ELV13303.1| DNA-(apurinic or apyrimidinic site) lyase [Tupaia chinensis]
Length = 318
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 133/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEVPALYEDPPDQKTSSSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDKFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLTDSFRHL 256
>gi|226467620|emb|CAX69686.1| APEX nuclease [Schistosoma japonicum]
Length = 319
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 107/231 (46%), Gaps = 52/231 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK V+WN N + +KN E +I + D+ +QE + P
Sbjct: 65 LKLVSWNVNGIRAVIKNGGME---YIKKENADIFCIQETKCP------------------ 103
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKTALK 160
L + S +YQ +WS AD + YAGTAL K PKKV++ + +
Sbjct: 104 ---------LHKIPSEAKLPSYQSFWSSADKAGYAGTALFSK--IAPKKVTYGIGRKV-- 150
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI AEF+ FYL+ Y PN G + R ++WD E++ + KP+I C
Sbjct: 151 HDEEGRVITAEFDRFYLVTAYVPNAGQGLARLPY-REKEWDPDFLEYLRKLDATKPVIVC 209
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+HEEID++ P+ + GFT ER F +L
Sbjct: 210 GDLNVAHEEIDLARPD---------------TNHKTAGFTDQERSGFTKLL 245
>gi|229086305|ref|ZP_04218483.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
gi|228697000|gb|EEL49807.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
Length = 252
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 110/236 (46%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F ++ D D+ LQE+++ + P+
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFIEYLEETDTDIFCLQEIKLQSGQVDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+L KK +P V++ L +
Sbjct: 51 ---------------------YYVYWNYAVKKGYSGTAILTKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GR+I EFE FY+L Y PN K R KW++ I ++ + K P+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMLTLYTPNA--KRGLERLDYRMKWEEDILSYITKLDKKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ERKRF IL E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KTNRKNPGFSDQERKRFTQILDEGFI 184
>gi|344305891|ref|XP_003421623.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Loxodonta africana]
Length = 318
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 130/265 (49%), Gaps = 55/265 (20%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDRKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + K P Q+L P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSEKKLPAELQDL---------------------PGLSHQYWLA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDAFVLVTVYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLDYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK----------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILK 271
NK++ GFT ER+ FG +L+
Sbjct: 225 -GNKKN---AGFTPQERQGFGELLQ 245
>gi|125490347|ref|NP_001074954.1| DNA-(apurinic or apyrimidinic site) lyase [Pan troglodytes]
gi|397481065|ref|XP_003811777.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|397481067|ref|XP_003811778.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|397481069|ref|XP_003811779.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|146286033|sp|A1YFZ3.1|APEX1_PANPA RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|146286034|sp|A2T6Y4.1|APEX1_PANTR RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|219474|dbj|BAA02633.1| APEX nuclease [Homo sapiens]
gi|1710232|gb|AAB50212.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|12803075|gb|AAH02338.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|14198174|gb|AAH08145.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|17939646|gb|AAH19291.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|30583311|gb|AAP35900.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|61358640|gb|AAX41599.1| APEX nuclease 1 [synthetic construct]
gi|61362429|gb|AAX42220.1| APEX nuclease 1 [synthetic construct]
gi|61362434|gb|AAX42221.1| APEX nuclease 1 [synthetic construct]
gi|121483845|gb|ABM54218.1| APEX1 [Pan paniscus]
gi|123981822|gb|ABM82740.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|123996645|gb|ABM85924.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|124111123|gb|ABM91939.1| APEX1 [Pan troglodytes]
gi|208965824|dbj|BAG72926.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|410220880|gb|JAA07659.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410220882|gb|JAA07660.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410220884|gb|JAA07661.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256572|gb|JAA16253.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256574|gb|JAA16254.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256576|gb|JAA16255.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294028|gb|JAA25614.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294030|gb|JAA25615.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294032|gb|JAA25616.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|1090503|prf||2019234A APEX nuclease
Length = 318
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 134/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>gi|410961722|ref|XP_003987428.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Felis catus]
gi|410961726|ref|XP_003987430.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 3
[Felis catus]
gi|410961728|ref|XP_003987431.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 4
[Felis catus]
gi|410961730|ref|XP_003987432.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 5
[Felis catus]
Length = 318
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 133/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLEAVPLADSFRHL 256
>gi|443711514|gb|ELU05263.1| hypothetical protein CAPTEDRAFT_159745 [Capitella teleta]
Length = 307
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 134/271 (49%), Gaps = 49/271 (18%)
Query: 15 KKPALSPSKK----DGETTETSSE---ENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFI 67
KK A +PSK+ D + SSE ++ KK LKF +WN N + V+ N +++
Sbjct: 20 KKLARTPSKRESIPDVSGNDYSSEAATKDGKKWNLKFSSWNVNGIRAWVEKNG---HSYV 76
Query: 68 TTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWW 127
T DPD+ +QE + +KD + DD + Y +W
Sbjct: 77 TAEDPDIFCVQETKC----AKDL------IPDDAN-----------------IEGYHAYW 109
Query: 128 SLAD-SKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 186
D Y+GT L K+ +P V++ ++K +++ +GRVI AEF+ FY + Y PN G
Sbjct: 110 LSGDKDGYSGTGLYSKQ--EPLSVTYGIDKE--EHDKEGRVITAEFDKFYFVTAYVPNAG 165
Query: 187 WKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 245
S+ R KWD +E++ K P++ CGDLNV+H+EID+++P+ + K G+
Sbjct: 166 RGLPRLSY-RSEKWDPDFREYLKNLDAKKPVVMCGDLNVAHKEIDIANPK--SNKKSAGF 222
Query: 246 VPPNKEDWG---QPGFTIAERKRFGAILKEY 273
P ++ + + GF A R+ + K+Y
Sbjct: 223 TPQERQGFSELLEAGFVDAFRELYPEETKKY 253
>gi|256080329|ref|XP_002576434.1| ap endonuclease [Schistosoma mansoni]
Length = 254
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 99/196 (50%), Gaps = 37/196 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
K V+WN N + +KNN E +I + D+ +QE + P
Sbjct: 65 FKIVSWNVNGIRAVIKNNGME---YIKKENADIFCIQETKCP------------------ 103
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKTALK 160
L + S +YQ +WS AD + YAGTAL K P KV++ + K
Sbjct: 104 ---------LHKIPSEAKVPSYQSFWSSADKAGYAGTALFSK--ISPIKVTYGIGKKM-- 150
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI AE++ FYL+ Y PN+G + R ++WD E++ + S KP+I C
Sbjct: 151 HDDEGRVITAEYDKFYLVTAYVPNSGQGLIRLPY-REKEWDPDFLEYLRKLDSTKPVIVC 209
Query: 220 GDLNVSHEEIDVSHPE 235
GDLNV+HEEID++ PE
Sbjct: 210 GDLNVAHEEIDLARPE 225
>gi|30585287|gb|AAP36916.1| Homo sapiens APEX nuclease (multifunctional DNA repair enzyme) 1
[synthetic construct]
gi|60653967|gb|AAX29676.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 134/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>gi|178743|gb|AAA58371.1| apurinic endonuclease [Homo sapiens]
Length = 318
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 134/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ ++ K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSA-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>gi|468371|gb|AAA21019.1| apurinic/apyrimidinic endonuclease [Rattus norvegicus]
Length = 316
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 132/279 (47%), Gaps = 55/279 (19%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 29 KKTEKEAAGEGPVLYEDPPDQKTSASG-----KSATLKICSWNVDGLRAWIKK---KGLD 80
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ PD++ LQE + P QEL P +Q
Sbjct: 81 WVKEEAPDILCLQETK---CSENKLPAELQEL---------------------PGLTHQY 116
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 184
W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEFE+F L+ Y PN
Sbjct: 117 WSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFESFILVTAYVPN 172
Query: 185 NGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 243
G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 173 AG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPK-------- 222
Query: 244 GYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT E + FG +L+ + F L
Sbjct: 223 ----GNKKN---AGFTPQEAQGFGEMLQAVPLADSFRHL 254
>gi|149692696|ref|XP_001505181.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Equus
caballus]
Length = 318
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 132/276 (47%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDAFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>gi|410961724|ref|XP_003987429.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 2
[Felis catus]
Length = 404
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 133/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 120 EKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 171
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 172 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 207
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 208 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 262
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 263 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 311
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 312 --NKKN---AGFTPQERQGFGELLEAVPLADSFRHL 342
>gi|349612033|ref|ZP_08891261.1| exodeoxyribonuclease [Lactobacillus sp. 7_1_47FAA]
gi|348609208|gb|EGY59168.1| exodeoxyribonuclease [Lactobacillus sp. 7_1_47FAA]
Length = 275
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 108/240 (45%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVK------NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ F++WN +SL + N N I +PDV+A+QE ++ A G K H
Sbjct: 1 MLFISWNIDSLNAALTGDSDRANETRSVLNKIKKANPDVVAIQETKLRANG---PTKKHC 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F++YQ W A YAGT L KK + P+ V+
Sbjct: 58 DILADI------------------FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ L + +GR+I EF+TFYL Y PN+G E R WD + QE++ +
Sbjct: 99 YPLIGAPDTMDQEGRIITLEFDTFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H+EID+ HPE + GFT ERK F +L
Sbjct: 157 DQNKPVIASGDYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLL 201
>gi|261408787|ref|YP_003245028.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
gi|261285250|gb|ACX67221.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
Length = 250
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V F ++ D D+ +QE ++ A +
Sbjct: 1 MKLVSWNVNGLRACVTKG---FMDYFNEADADIFCVQETKLQAGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P YQ +W+ A+ K Y+GTA+ + P V + LE+ +
Sbjct: 45 -------------LDLGP--EYQQYWNYAEKKGYSGTAVFTR--IAPLSVRYGLEEDS-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
EP+GRVI EFE FYL+N Y PN K + + R +W++R + ++LQ KP+I C
Sbjct: 86 -EPEGRVITLEFEGFYLVNVYTPNA--KRDLSRLDYRLEWEERFRTYLLQLDERKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ + K + G GFT+ ER + +L I F
Sbjct: 143 GDLNVAHQEIDLKNA---------------KSNHGNSGFTLEERGKMTDLLAAGFIDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 HFY 190
>gi|329930518|ref|ZP_08284058.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
gi|328934896|gb|EGG31386.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
Length = 250
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V F ++ D D+ +QE ++ A +
Sbjct: 1 MKLVSWNVNGLRACVTKG---FMDYFNEADADIFCVQETKLQAGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P YQ +W+ A+ K Y+GTA+ + P V + LE+ +
Sbjct: 45 -------------LDLGP--EYQQYWNYAEKKGYSGTAVFTR--IAPLSVRYGLEEDS-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
EP+GRVI EFE FYL+N Y PN K + + R +W++R + ++LQ KP+I C
Sbjct: 86 -EPEGRVITLEFEDFYLVNVYTPNA--KRDLSRLDYRLEWEERFRTYLLQLDERKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ + K + G GFT+ ER + +L I F
Sbjct: 143 GDLNVAHQEIDLKNA---------------KSNHGNSGFTLEERGKMTDLLAAGFIDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 HFY 190
>gi|219478|dbj|BAA14381.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
Length = 318
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 133/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDHKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>gi|297694584|ref|XP_002824554.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Pongo abelii]
gi|395745632|ref|XP_003778302.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pongo abelii]
gi|395745635|ref|XP_003778303.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pongo abelii]
gi|146286035|sp|A2T7I6.1|APEX1_PONPY RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|124054149|gb|ABM89264.1| APEX1 [Pongo pygmaeus]
Length = 318
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 133/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ + F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>gi|299037|gb|AAB26054.1| APEX nuclease=major apurinic/apyrimidinic endonuclease [human,
Peptide, 317 aa]
Length = 317
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 133/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 33 DKEAAGEGPALYEDPPDHKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 84
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 85 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 120
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 121 PSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 175
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 176 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 225 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 255
>gi|309806468|ref|ZP_07700473.1| exodeoxyribonuclease III [Lactobacillus iners LactinV 03V1-b]
gi|308167141|gb|EFO69315.1| exodeoxyribonuclease III [Lactobacillus iners LactinV 03V1-b]
Length = 275
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 108/240 (45%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ F++WN +SL + + N I +PDV+A+QE ++ A G K H
Sbjct: 1 MLFISWNIDSLNAALTGDSDRAHETRSVLNKIKEANPDVVAIQETKLRANG---PTKKHC 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F++YQ W A YAGT L KK + P+ VS
Sbjct: 58 DILADI------------------FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ L + +GR+I EF+TFYL Y PN+G E R WD + QE++ +
Sbjct: 99 YPLIGAPDTMDQEGRIITLEFDTFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H+EID+ HPE + GFT ERK F +L
Sbjct: 157 DQNKPVIASGDYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLL 201
>gi|18375501|ref|NP_001632.2| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375503|ref|NP_542379.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375505|ref|NP_542380.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|346644849|ref|NP_001231178.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|113984|sp|P27695.2|APEX1_HUMAN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; Short=APE-1; AltName: Full=REF-1;
AltName: Full=Redox factor-1; Contains: RecName:
Full=DNA-(apurinic or apyrimidinic site) lyase,
mitochondrial
gi|13399540|pdb|1E9N|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399541|pdb|1E9N|B Chain B, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399606|pdb|1HD7|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIDINIMIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|354459810|pdb|3U8U|A Chain A, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459811|pdb|3U8U|B Chain B, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459812|pdb|3U8U|C Chain C, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459813|pdb|3U8U|D Chain D, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459814|pdb|3U8U|E Chain E, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459815|pdb|3U8U|F Chain F, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|19339022|gb|AAL86909.1|AF488551_1 APEX nuclease (multifunctional DNA repair enzyme) [Homo sapiens]
gi|32022|emb|CAA46925.1| AP endonuclease 1 [Homo sapiens]
gi|178747|gb|AAA58372.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|183780|gb|AAA58629.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|254069|gb|AAB22977.1| Ref-1 [Homo sapiens]
gi|13436404|gb|AAH04979.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|28071072|emb|CAD61917.1| unnamed protein product [Homo sapiens]
gi|54697126|gb|AAV38935.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|60655677|gb|AAX32402.1| APEX nuclease 1 [synthetic construct]
gi|61358645|gb|AAX41600.1| APEX nuclease 1 [synthetic construct]
gi|63100763|gb|AAH95428.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|119586867|gb|EAW66463.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586868|gb|EAW66464.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586869|gb|EAW66465.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586870|gb|EAW66466.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586871|gb|EAW66467.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586872|gb|EAW66468.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|158255636|dbj|BAF83789.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 133/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>gi|118138505|pdb|2ISI|A Chain A, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|118138506|pdb|2ISI|B Chain B, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|118138507|pdb|2ISI|C Chain C, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|443428279|pdb|4IEM|A Chain A, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428283|pdb|4IEM|B Chain B, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428287|pdb|4IEM|C Chain C, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428291|pdb|4IEM|D Chain D, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
Length = 317
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 133/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 33 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 84
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 85 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 120
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 121 PSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 175
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 176 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 225 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 255
>gi|60652565|gb|AAX28977.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 133/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>gi|350645454|emb|CCD59806.1| ap endonuclease, putative [Schistosoma mansoni]
Length = 281
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 108/231 (46%), Gaps = 52/231 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
K V+WN N + +KNN E +I + D+ +QE + P
Sbjct: 65 FKIVSWNVNGIRAVIKNNGME---YIKKENADIFCIQETKCP------------------ 103
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKTALK 160
L + S +YQ +WS AD + YAGTAL K P KV++ + K
Sbjct: 104 ---------LHKIPSEAKVPSYQSFWSSADKAGYAGTALFSK--ISPIKVTYGIGKKM-- 150
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI AE++ FYL+ Y PN+G + R ++WD E++ + S KP+I C
Sbjct: 151 HDDEGRVITAEYDKFYLVTAYVPNSGQGLIRLPY-REKEWDPDFLEYLRKLDSTKPVIVC 209
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+HEEID++ PE + GFT ER F +L
Sbjct: 210 GDLNVAHEEIDLARPE---------------TNHKTAGFTDQERSGFTKLL 245
>gi|157830335|pdb|1BIX|A Chain A, The Crystal Structure Of The Human Dna Repair Endonuclease
Hap1 Suggests The Recognition Of Extra-Helical
Deoxyribose At Dna Abasic Sites
Length = 287
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 130/265 (49%), Gaps = 55/265 (20%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 3 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 54
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 55 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 90
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 91 PSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 145
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 146 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK----------- 193
Query: 247 PPNKEDWGQPGFTIAERKRFGAILK 271
NK++ GFT ER+ FG +L+
Sbjct: 194 -GNKKN---AGFTPQERQGFGELLQ 214
>gi|310643609|ref|YP_003948367.1| exodeoxyribonuclease iii xth [Paenibacillus polymyxa SC2]
gi|309248559|gb|ADO58126.1| Exodeoxyribonuclease III Xth [Paenibacillus polymyxa SC2]
gi|392304359|emb|CCI70722.1| exodeoxyribonuclease III [Paenibacillus polymyxa M1]
Length = 254
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D D+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETDADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ILM + + Y +W+ A+ K Y+GTA+ K +P V + LE+
Sbjct: 39 ----QEGQILMENM-----EEYAQYWNYAEKKGYSGTAIFTK--IKPLSVHYGLEENE-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
EP+GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q KP+I C
Sbjct: 86 -EPEGRTITLEFEKFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQQLDAQKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ + K ++G GFT ER R +L I F
Sbjct: 143 GDLNVAHQEIDLKNA---------------KANYGNAGFTPEERDRMSQLLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|296214367|ref|XP_002753758.1| PREDICTED: uncharacterized protein LOC100400557 isoform 1
[Callithrix jacchus]
gi|296214369|ref|XP_002753759.1| PREDICTED: uncharacterized protein LOC100400557 isoform 2
[Callithrix jacchus]
Length = 318
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 133/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLPHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>gi|403289383|ref|XP_003935839.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Saimiri
boliviensis boliviensis]
gi|403289385|ref|XP_003935840.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Saimiri
boliviensis boliviensis]
Length = 318
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 133/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEVAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLPHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>gi|259500789|ref|ZP_05743691.1| exodeoxyribonuclease III [Lactobacillus iners DSM 13335]
gi|302190760|ref|ZP_07267014.1| exonuclease III [Lactobacillus iners AB-1]
gi|312871137|ref|ZP_07731235.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 3008A-a]
gi|312872693|ref|ZP_07732758.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2062A-h1]
gi|312874955|ref|ZP_07734974.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2053A-b]
gi|329919752|ref|ZP_08276703.1| exodeoxyribonuclease III [Lactobacillus iners SPIN 1401G]
gi|259167483|gb|EEW51978.1| exodeoxyribonuclease III [Lactobacillus iners DSM 13335]
gi|311089700|gb|EFQ48125.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2053A-b]
gi|311091735|gb|EFQ50114.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2062A-h1]
gi|311093151|gb|EFQ51497.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 3008A-a]
gi|328937099|gb|EGG33527.1| exodeoxyribonuclease III [Lactobacillus iners SPIN 1401G]
Length = 275
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 108/240 (45%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ F++WN +SL + + N I +PDV+A+QE ++ A G K H
Sbjct: 1 MLFISWNIDSLNAALTGDSDRAHETRSVLNKIKEANPDVVAIQETKLRANG---PTKKHC 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F++YQ W A YAGT L KK + P+ V+
Sbjct: 58 DILADI------------------FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ L + +GR+I EF+TFYL Y PN+G E R WD + QE++ +
Sbjct: 99 YPLIGAPDTMDQEGRIITLEFDTFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H+EID+ HPE + GFT ERK F +L
Sbjct: 157 DQNKPVIASGDYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLL 201
>gi|291403439|ref|XP_002718079.1| PREDICTED: APEX nuclease 1 [Oryctolagus cuniculus]
Length = 318
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 131/276 (47%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + ++I
Sbjct: 34 EKESAGEGPVLYEDPPDQKTSPSG-----KAATLKICSWNVDGLRAWIKK---KGLDWIK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLPHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDAFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLTDSFRHL 256
>gi|348577629|ref|XP_003474586.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Cavia
porcellus]
Length = 318
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 134/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEEAGEGPALYEDPPDKKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL + + +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQELSELS---------------------HQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PIKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>gi|146286032|sp|A1YES6.1|APEX1_GORGO RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|120974134|gb|ABM46644.1| APEX1 [Gorilla gorilla]
Length = 318
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 127/265 (47%), Gaps = 55/265 (20%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +YQ W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSYQYWSA 121
Query: 129 -LADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PXXKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ + F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILK 271
NK++ GFT ER+ FG +L+
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQ 245
>gi|308070428|ref|YP_003872033.1| exodeoxyribonuclease [Paenibacillus polymyxa E681]
gi|305859707|gb|ADM71495.1| Exodeoxyribonuclease [Paenibacillus polymyxa E681]
Length = 254
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ + D+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETNADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ILM + + Y +W+ A+ K Y+GTA+ K +P V + LE+
Sbjct: 39 ----QEGQILMENM-----EEYTQYWNYAEKKGYSGTAIFTK--IKPLSVHYGLEENE-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
EP+GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q KP+I C
Sbjct: 86 -EPEGRTITLEFENFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQQLDALKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ + K ++G GFT ER+R +L I F
Sbjct: 143 GDLNVAHQEIDLKNA---------------KANYGNAGFTPEERERMSLLLDAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 TFY 190
>gi|395849480|ref|XP_003797352.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Otolemur
garnettii]
Length = 318
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 133/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGPVLYEDPPDKKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + L L P ++Q W +
Sbjct: 86 EEAPDILCLQE---------------------TKCSENK---LPTELQDLPGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDKFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLTSQKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>gi|399215902|emb|CCF72590.1| unnamed protein product [Babesia microti strain RI]
Length = 459
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 127/264 (48%), Gaps = 44/264 (16%)
Query: 37 SKKDPLKFVTWNANSL--LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-------- 86
S+ DP K + W+ + + + + W +F + +P ++ LQ V++ A+
Sbjct: 106 SEDDPKKIMVWDISGMHDMNKKSKAWNQFLALVNENNPCILILQNVKLCASKFTGICAKI 165
Query: 87 ------SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALL 140
P QEL+D + + L FK Y++ SLA + G +L
Sbjct: 166 PSKYNEGTIPPTYEQELEDGS---------FIDNLMKTSFKKYKVIHSLASWRVRGQMIL 216
Query: 141 VKKCFQ--------PKKVSFSL--EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 190
+KK F PK++ ++L ++ A + +GRV++ EF++FYL++ P NGW E
Sbjct: 217 LKKSFTVSNSTFILPKRIRYNLNIKQNAKYHNHEGRVVIIEFDSFYLMSLITPGNGWITE 276
Query: 191 ENSFQRRRKWDKRIQEFVLQCSG--KPLIWCGDLNVSHEEIDVSHPEFFAAAKL-NGYVP 247
S ++R+KWD + F L+ S K +I G+LN S E+IDVS+P AA KL V
Sbjct: 277 --SIKQRKKWDLELTTF-LKASKYIKAVIMVGNLNCSPEDIDVSNP---AALKLEKTAVL 330
Query: 248 PNKEDWGQPGFTIAERKRFGAILK 271
+E G PG +R F LK
Sbjct: 331 HEEEQHGYPGTREVDRNGFEETLK 354
>gi|367462704|gb|ADJ96599.2| DNA repair enzyme APEX-1 [Camelus dromedarius]
Length = 318
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 135/279 (48%), Gaps = 55/279 (19%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + AL D +T+ + K LK +WN + L +K + +
Sbjct: 31 KKTEKEAAGEGAALYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLD 82
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ PD++ LQE TK S + ++ LS P +Q
Sbjct: 83 WVKEEAPDILCLQE---------------------TKCSENKLPPELQELSGLP---HQY 118
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 184
W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+ F L+ Y PN
Sbjct: 119 WSAPSDKEGYSGVGLLSRQC--PIKVSYGIGEE--EHDQEGRVIVAEFDAFVLVTVYVPN 174
Query: 185 NGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 243
G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 175 AG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------- 225
Query: 244 GYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 -----NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>gi|346986376|ref|NP_001231340.1| DNA-(apurinic or apyrimidinic site) lyase [Cricetulus griseus]
gi|4106095|gb|AAD02702.1| apurinic/apyrimidinic endonuclease [Cricetulus griseus]
gi|344257035|gb|EGW13139.1| DNA-(apurinic or apyrimidinic site) lyase [Cricetulus griseus]
Length = 317
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 131/276 (47%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ K LK +WN + L +K + +++
Sbjct: 33 EKEAAGEGPFLYEDAPDNKTSP-----GGKLATLKICSWNVDGLRAWIKK---KGLDWVK 84
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + L L P +Q W +
Sbjct: 85 EEAPDILCLQE---------------------TKCSENK---LPAELQDLPGLTHQYWSA 120
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 121 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 175
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WDK +F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 176 -RGLVRLEYRQRWDKAFCKFLKDLASRKPLVLCGDLNVAHEEIDLRNPK----------- 223
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 224 -GNKKN---AGFTPQERQGFGELLQAVPLTDSFRHL 255
>gi|325913687|ref|ZP_08176049.1| exodeoxyribonuclease III [Lactobacillus iners UPII 60-B]
gi|325477046|gb|EGC80196.1| exodeoxyribonuclease III [Lactobacillus iners UPII 60-B]
Length = 275
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 107/240 (44%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ F++WN +SL + + N I +PDV+A+QE ++ A G K H
Sbjct: 1 MLFISWNIDSLNAALTGDSDRAHETRSVLNKIKEANPDVVAIQETKLRANG---PTKKHC 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F++YQ W A YAGT L KK + P+ VS
Sbjct: 58 DILADI------------------FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ L + +GR+I EF +FYL Y PN+G E R WD + QE++ +
Sbjct: 99 YPLIGAPDTMDQEGRIITLEFNSFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLTKL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H+EID+ HPE + GFT ERK F +L
Sbjct: 157 DQNKPVIASGDYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLL 201
>gi|312873321|ref|ZP_07733376.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2052A-d]
gi|311091201|gb|EFQ49590.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2052A-d]
Length = 275
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 107/240 (44%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ F++WN +SL + + N I +PDV+A+QE ++ A G K H
Sbjct: 1 MLFISWNIDSLNAALTGDSDRAHETRSVLNKIKEANPDVVAIQETKLRANG---PTKKHC 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F++YQ W A YAGT L KK + P+ VS
Sbjct: 58 DILADI------------------FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ L + +GR+I EF +FYL Y PN+G E R WD + QE++ +
Sbjct: 99 YPLIGAPDTMDQEGRIITLEFNSFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLTKL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H+EID+ HPE + GFT ERK F +L
Sbjct: 157 DQNKPVIASGDYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLL 201
>gi|32024|emb|CAA42437.1| HAP1 [Homo sapiens]
Length = 318
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 132/276 (47%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT E + FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQEAQGFGELLQAVPLADSFRHL 256
>gi|334319618|ref|XP_001379263.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Monodelphis domestica]
Length = 320
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 120/238 (50%), Gaps = 50/238 (21%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ K LK +WN + L +K + +++ PD++ LQE + + SK P
Sbjct: 58 SGKSSTLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETK--CSESKLPP---- 108
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
EL+D P YQ W S +D + Y+G LL ++C P V++ +
Sbjct: 109 ELQD------------------LPGLTYQYWSSPSDKEGYSGVGLLSRQC--PLSVTYGI 148
Query: 155 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK 214
+ +++ +GRVI+AEFE F L+ Y PN G + R++WD+ ++F+ S K
Sbjct: 149 GEE--EHDQEGRVIVAEFEAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLSAK 204
Query: 215 -PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
PL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+
Sbjct: 205 KPLVLCGDLNVAHEEIDLRNPK------------GNKKN---AGFTPQERQGFGELLQ 247
>gi|320163204|gb|EFW40103.1| APEX nuclease [Capsaspora owczarzaki ATCC 30864]
Length = 429
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 107/243 (44%), Gaps = 51/243 (20%)
Query: 29 TETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK 88
T + + N K K WN N L +K ++ + PDV+ +QE + G
Sbjct: 165 TTSRAAPNGKPINFKIACWNVNGLKNAIKEGCLQYLEY---EKPDVLCIQETK---CGEG 218
Query: 89 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK 148
+ P + + P + Y W+S YAGT + K QP
Sbjct: 219 EIPADS---------------------AVPGYYGY--WYSAQKRGYAGTGMYSKT--QPI 253
Query: 149 KVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV 208
+VSF L +++ +GRVI AEF FYL+ Y PN+G K E + R+ WD + ++
Sbjct: 254 RVSFGLN--VPEHDTEGRVITAEFADFYLVTAYVPNSGQKLE--TLPYRQTWDVAFRTYL 309
Query: 209 LQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
L KP++ CGDLNV+H EID+ +P K + GFT ER+ F
Sbjct: 310 LSLDAKKPVVLCGDLNVAHNEIDLKNP---------------KTNKRSAGFTPQEREGFT 354
Query: 268 AIL 270
IL
Sbjct: 355 TIL 357
>gi|351701700|gb|EHB04619.1| DNA-(apurinic or apyrimidinic site) lyase [Heterocephalus glaber]
Length = 318
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 132/276 (47%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGDGPVLYEDPPDKKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL LS +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQELS---------------GLS------HQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KV++ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVTYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK----------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 225 -GNKKN---AGFTPQERQGFGELLQAVPLTDSFRHL 256
>gi|294055155|ref|YP_003548813.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
gi|293614488|gb|ADE54643.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
Length = 262
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 116/244 (47%), Gaps = 61/244 (25%)
Query: 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
P ++WN N L +K F +F+ + PDV+ LQE ++ A + D
Sbjct: 3 PTHLLSWNVNGLRAVLKKG---FDDFLASQQPDVLCLQETKISADLTADF---------- 49
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
A + P+ ++W+ A+ K Y+GTA++ + +P V + L
Sbjct: 50 -------------AFAGYPY----VYWNCAEKKGYSGTAIISQ--IEPISVRYGLGIE-- 88
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQE----FVLQCSG-- 213
K++ +GRVI AEFE +YL+ Y PN+ +E +R R+ D R E F+ G
Sbjct: 89 KHDQEGRVITAEFEDYYLVTVYTPNSQNHDEN---KRPRRLDYRTLEWDVDFLAYVKGLE 145
Query: 214 --KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP+++CGDLNV+H EID+++P K + GFT ER RF AI++
Sbjct: 146 VTKPVVFCGDLNVAHTEIDLANP---------------KTNRKNAGFTDEERGRFDAIIE 190
Query: 272 EYLI 275
I
Sbjct: 191 AGFI 194
>gi|355668893|gb|AER94340.1| APEX nuclease 1 [Mustela putorius furo]
Length = 317
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 118/238 (49%), Gaps = 50/238 (21%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
N K LK +WN + L +K + +++ PD++ LQE + P Q
Sbjct: 55 NGKSATLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETK---CSENKLPVELQ 108
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
EL P ++Q W + +D + Y+G LL ++C P KVS+ +
Sbjct: 109 EL---------------------PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGI 145
Query: 155 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSG 213
+ +++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+ S
Sbjct: 146 GEE--EHDQEGRVIVAEFDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASR 201
Query: 214 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+
Sbjct: 202 KPLVLCGDLNVAHEEIDLRNPK------------GNKKN---AGFTPQERQGFGELLQ 244
>gi|213021237|ref|NP_001132943.1| DNA-(apurinic or apyrimidinic site) lyase [Sus scrofa]
gi|210062866|gb|ACJ06403.1| APEX nuclease 1 [Sus scrofa]
Length = 318
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 130/265 (49%), Gaps = 55/265 (20%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + ++ LS P +Q W +
Sbjct: 86 EEAPDILCLQE---------------------TKCSENKLPAELQELSGLP---HQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDAFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPK----------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILK 271
NK++ GFT ER+ FG +L+
Sbjct: 225 -GNKKN---AGFTPQERQGFGELLQ 245
>gi|403340594|gb|EJY69586.1| Exodeoxyribonuclease III family protein [Oxytricha trifallax]
Length = 437
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 117/254 (46%), Gaps = 47/254 (18%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQE 96
S+++PLK WN N + +K+ +F F P ++ L E ++
Sbjct: 87 SQEEPLKIWHWNVNGIRAVLKSG--KFQEFCEKAQPHILCLNETKI-------------- 130
Query: 97 LKDDTKASREEKLILMRALSSPPFKNYQIWWS--LADSKYAGTALLVKKCFQ---PKKVS 151
D A +E + L A P Y W+ + YAGTA+L+ K ++ P KV
Sbjct: 131 ---DVDALAKENIKLQIAKWFPIDTQY---WNCCIVKKGYAGTAILINKNYKGSKPTKVE 184
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + + K++ +GR++ A+F+ F L+ TY PN G + R +WD+ ++
Sbjct: 185 YGIGIS--KHDKEGRMVNAQFDKFNLVATYIPNAGVMGLDRLGYRVNEWDRDFHTYLKNT 242
Query: 212 ---SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
+GKP+IWCGDLNV++E ID+ Y P KE G+TI ER F A
Sbjct: 243 EVTTGKPVIWCGDLNVANEPIDI-------------YNPKGKEK--SAGYTIQERNSFKA 287
Query: 269 ILKEYLIFLCFYEL 282
LK+ + L
Sbjct: 288 FLKDRAFIDTYRHL 301
>gi|340382054|ref|XP_003389536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Amphimedon queenslandica]
Length = 372
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 128/271 (47%), Gaps = 54/271 (19%)
Query: 17 PALSPSKKDGETTETSSEENSKKDP---LKFVTWNANSLLLRVKNNWPEFSNFITTFDPD 73
P LS S D + + SS+ +K KF +WN N + +K + E+ N PD
Sbjct: 89 PILSKSVTDYSSIDLSSDAKNKDGSPWTHKFSSWNVNGVRAWLKASGIEYVNQEC---PD 145
Query: 74 VIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK 133
V +QE + KD PK+ E+ Y +W+ A+ K
Sbjct: 146 VFCIQETK---CSEKDLPKSELEVP-----------------------GYHSYWNSAEQK 179
Query: 134 -YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEEN 192
Y+GT L K+ +P V++ + K++ +GRVI AEFE FY + Y PN G K +
Sbjct: 180 GYSGTGLYSKE--EPINVTYGI--GIPKHDNEGRVITAEFEKFYFVTAYIPNAGDKLKRL 235
Query: 193 SFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKE 251
S+ R +WD ++++ KP++ CGDLNV+H+EID+++P K
Sbjct: 236 SY-RVGEWDPDFKKYLKSLDENKPVVLCGDLNVAHKEIDIANP---------------KT 279
Query: 252 DWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
+ GFT ER+ F ++L++ + F +L
Sbjct: 280 NQRSAGFTKEERESFSSLLEDNKLIDSFRDL 310
>gi|432112926|gb|ELK35512.1| DNA-(apurinic or apyrimidinic site) lyase [Myotis davidii]
Length = 320
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 131/276 (47%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + L D +T+ + K LK +WN + L +K + +++
Sbjct: 36 EKEAAGEGSVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 87
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 88 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 123
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AE++ F L+ Y PN G
Sbjct: 124 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEYDAFVLVTAYVPNAG- 178
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 179 -RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPK----------- 226
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 227 -GNKKN---AGFTPQERQGFGELLQAVPLADSFRHL 258
>gi|395502890|ref|XP_003755806.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Sarcophilus harrisii]
Length = 321
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 118/249 (47%), Gaps = 50/249 (20%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ K LK +WN + L +K + +++ PD++ LQE + P Q
Sbjct: 59 SGKPSTLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETK---CSESKLPSELQ 112
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
+L P YQ W S D + Y+G LL ++C P V+F +
Sbjct: 113 DL---------------------PGLTYQYWSSPTDKEGYSGVGLLSRQC--PLNVTFGI 149
Query: 155 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK 214
+ +++ +GRVI+AEFE F L+ Y PN G + R++WD+ ++F+ + K
Sbjct: 150 GEE--EHDQEGRVIVAEFEAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLNAK 205
Query: 215 -PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEY 273
PL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+
Sbjct: 206 KPLVLCGDLNVAHEEIDLRNPK------------GNKKN---AGFTPQERQGFGELLQAV 250
Query: 274 LIFLCFYEL 282
+ F L
Sbjct: 251 PLTDSFRHL 259
>gi|162329924|pdb|2O3H|A Chain A, Crystal Structure Of The Human C65a Ape
Length = 285
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 128/261 (49%), Gaps = 55/261 (21%)
Query: 13 SAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDP 72
+++ PAL D +T+ + K LK +WN + L +K + +++ P
Sbjct: 5 ASEGPALYEDPPDQKTSPSG-----KPATLKIASWNVDGLRAWIKK---KGLDWVKEEAP 56
Query: 73 DVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADS 132
D++ LQE + P QEL P ++Q W + +D
Sbjct: 57 DILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSAPSDK 92
Query: 133 K-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEE 191
+ Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 93 EGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGL 146
Query: 192 NSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNK 250
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+ NK
Sbjct: 147 VRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK------------GNK 194
Query: 251 EDWGQPGFTIAERKRFGAILK 271
++ GFT ER+ FG +L+
Sbjct: 195 KN---AGFTPQERQGFGELLQ 212
>gi|395502892|ref|XP_003755807.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 2
[Sarcophilus harrisii]
Length = 320
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 118/249 (47%), Gaps = 50/249 (20%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ K LK +WN + L +K + +++ PD++ LQE + P Q
Sbjct: 58 SGKPSTLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETK---CSESKLPSELQ 111
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
+L P YQ W S D + Y+G LL ++C P V+F +
Sbjct: 112 DL---------------------PGLTYQYWSSPTDKEGYSGVGLLSRQC--PLNVTFGI 148
Query: 155 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK 214
+ +++ +GRVI+AEFE F L+ Y PN G + R++WD+ ++F+ + K
Sbjct: 149 GEE--EHDQEGRVIVAEFEAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLNAK 204
Query: 215 -PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEY 273
PL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+
Sbjct: 205 KPLVLCGDLNVAHEEIDLRNPK------------GNKKN---AGFTPQERQGFGELLQAV 249
Query: 274 LIFLCFYEL 282
+ F L
Sbjct: 250 PLTDSFRHL 258
>gi|156362086|ref|XP_001625612.1| predicted protein [Nematostella vectensis]
gi|156212454|gb|EDO33512.1| predicted protein [Nematostella vectensis]
Length = 257
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 114/237 (48%), Gaps = 53/237 (22%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
+K K +WN N L +KNN +F++ DPDV +QE + A D PK
Sbjct: 1 RKSNFKITSWNVNGLRAWLKNN---SKSFVSKEDPDVFCIQETKCALA---DIPK----- 49
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK 156
E KL Y +W+ A+ K Y+G L KK +P KVS+ +
Sbjct: 50 --------EAKL-----------AGYHCYWNSAEQKGYSGVGLCSKK--EPIKVSYGMGN 88
Query: 157 TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KP 215
+++ +GRVI AE+E F+L+ +Y PN+G + R++W+K ++ + KP
Sbjct: 89 K--EHDKEGRVITAEYEDFHLVTSYVPNSGRGLPRLGY--RQQWNKDFLSYLKKLDEIKP 144
Query: 216 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
+I CGDLNV+H++ID+++P K + GFT ER F +L E
Sbjct: 145 VILCGDLNVAHKDIDLANP---------------KTNTRTAGFTKEERADFTTLLGE 186
>gi|337746485|ref|YP_004640647.1| ExoA protein [Paenibacillus mucilaginosus KNP414]
gi|336297674|gb|AEI40777.1| ExoA [Paenibacillus mucilaginosus KNP414]
Length = 259
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 110/243 (45%), Gaps = 58/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V FS + D D+ +QE ++
Sbjct: 1 MKLVSWNVNGLRACVNKG---FSEYFAQTDADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E I AL P + Y W+ A+ K Y+GTA+ K +P V + LE+ +
Sbjct: 39 ----QEGQI---ALDYPDYHQY---WNYAEKKGYSGTAVFTK--VKPLSVRYGLEEDS-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
EP+GR+I EF+ FYL+ Y PN K + + R +W+ R + ++ KP+I C
Sbjct: 85 -EPEGRIITLEFDGFYLVTVYTPNA--KRDLSRLDYRLEWEDRFRRYIAGLDAVKPVILC 141
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ + K + G GFT ER++ +L I F
Sbjct: 142 GDLNVAHEEIDLKNA---------------KGNRGNSGFTAEERQKMTDLLGAGFIDTFR 186
Query: 278 CFY 280
FY
Sbjct: 187 HFY 189
>gi|379720396|ref|YP_005312527.1| ExoA protein [Paenibacillus mucilaginosus 3016]
gi|386722997|ref|YP_006189323.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
gi|378569068|gb|AFC29378.1| ExoA [Paenibacillus mucilaginosus 3016]
gi|384090122|gb|AFH61558.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
Length = 259
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 110/243 (45%), Gaps = 58/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V FS + D D+ +QE ++
Sbjct: 1 MKLVSWNVNGLRACVNKG---FSEYFAQTDADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E I AL P + Y W+ A+ K Y+GTA+ K +P V + LE+ +
Sbjct: 39 ----QEGQI---ALDYPDYHQY---WNYAEKKGYSGTAVFTK--VKPLSVRYGLEEDS-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
EP+GR+I EF+ FYL+ Y PN K + + R +W+ R + ++ KP+I C
Sbjct: 85 -EPEGRIITLEFDGFYLVTVYTPNA--KRDLSRLDYRLEWEDRFRRYIAGLDAVKPVILC 141
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ + K + G GFT ER++ +L I F
Sbjct: 142 GDLNVAHEEIDLKNA---------------KGNRGNSGFTAEERQKMTDLLGAGFIDTFR 186
Query: 278 CFY 280
FY
Sbjct: 187 HFY 189
>gi|325182155|emb|CCA16608.1| exodeoxyribonuclease putative [Albugo laibachii Nc14]
Length = 375
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 128/282 (45%), Gaps = 59/282 (20%)
Query: 1 MKRFFKPIEKECSAKKPALSPS-KKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNN 59
+K+ +PI + A + PS D ET S LK + WN N L +K +
Sbjct: 79 LKKTQQPISSDMKAYCEQIRPSFGLDAETLPAES--------LKIIAWNVNGLRALLKYD 130
Query: 60 WPE-FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118
F ++ D D+I L E ++ D+P+ + E L L
Sbjct: 131 ESRYFHAYVREEDADIICLSETKI------DSPQ----------VEKMEDL-----LPKY 169
Query: 119 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 177
PF+ +WS A K YAGTA+ K +P +V L+ + L +GR + EFE F+L
Sbjct: 170 PFQ----YWSCAHKKGYAGTAVCSK--LEPLQVRSHLDDSTLG-STEGRFLALEFEKFWL 222
Query: 178 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC----SGKPLIWCGDLNVSHEEIDVSH 233
++TY PN G K E R +WD + + LQ S K +IWCGDLNV+H++ID+
Sbjct: 223 VHTYVPNAGMKLERLG-DRTTQWDAVLLQ-TLQSLEKESEKGVIWCGDLNVAHQDIDIHD 280
Query: 234 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
P+ N + PGFT AER FG LK +
Sbjct: 281 PK-------------NNRN-KSPGFTDAERNNFGETLKTGFV 308
>gi|288799645|ref|ZP_06405104.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
gi|288332893|gb|EFC71372.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
Length = 250
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V F + T D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRASVTKG---FEDIFKTLDADFFCLQETKMQA-GQLDLQ---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F+ Y+ +W+ AD K Y+GTA+ K P V + + +
Sbjct: 47 ------------------FEGYESYWNYADKKGYSGTAIYTKHS--PLSVQYGI--GIDQ 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRV+ EFE FYL+ Y PN+ ++E R +W++ Q ++++ + KP++ C
Sbjct: 85 HDHEGRVVTLEFEQFYLVTVYTPNS--QDELKRLDYRMEWERDFQAYLVKLDASKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+H+EID+ +P K + GFT ER++ +L I
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTNLLDNGFI 183
>gi|6980832|pdb|1DEW|A Chain A, Crystal Structure Of Human Ape1 Bound To Abasic Dna
gi|6980833|pdb|1DEW|B Chain B, Crystal Structure Of Human Ape1 Bound To Abasic Dna
Length = 279
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 125/257 (48%), Gaps = 55/257 (21%)
Query: 17 PALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIA 76
PAL D +T+ + K LK +WN + L +K + +++ PD++
Sbjct: 3 PALYEDPPDHKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILC 54
Query: 77 LQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YA 135
LQE + P QEL P ++Q W + +D + Y+
Sbjct: 55 LQETK---CSENKLPAELQEL---------------------PGLSHQYWSAPSDKEGYS 90
Query: 136 GTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQ 195
G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G +
Sbjct: 91 GVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLE 144
Query: 196 RRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWG 254
R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+ NK++
Sbjct: 145 YRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK------------GNKKN-- 190
Query: 255 QPGFTIAERKRFGAILK 271
GFT ER+ FG +L+
Sbjct: 191 -AGFTPQERQGFGELLQ 206
>gi|377832034|ref|ZP_09814998.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
gi|377554041|gb|EHT15756.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
Length = 252
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 104/232 (44%), Gaps = 57/232 (24%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDDT 101
KF++WN N L +K+ F D D +QE ++ P D P HQ
Sbjct: 3 KFISWNVNGLRAAIKHG---FLQVFNEMDADFFCIQETKLAPGQLDLDLPDYHQ------ 53
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+W+ A+ K Y+GTA+ K+ P V + +
Sbjct: 54 ------------------------YWNYAEKKGYSGTAIFAKQ--PPLSVQYGINVPEFD 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+E GRVI E+ FYL+NTY PN+G + + F R +++ E+V Q S K ++WC
Sbjct: 88 HE--GRVITLEYPDFYLINTYVPNSGAELKRLDF--RHGFNEAFYEYVNQLSQQKSIVWC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+H+EID+ +P+ + PGFT ER F +LK
Sbjct: 144 GDLNVAHQEIDLKNPQ---------------SNHHHPGFTDEERFDFSKLLK 180
>gi|301788284|ref|XP_002929556.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Ailuropoda melanoleuca]
gi|301788286|ref|XP_002929557.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Ailuropoda melanoleuca]
gi|301788288|ref|XP_002929558.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 3
[Ailuropoda melanoleuca]
gi|281345899|gb|EFB21483.1| hypothetical protein PANDA_019762 [Ailuropoda melanoleuca]
Length = 318
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 128/265 (48%), Gaps = 55/265 (20%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGSVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL LS +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQELS---------------GLS------HQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDAFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK----------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILK 271
NK++ GFT ER+ FG +L+
Sbjct: 225 -GNKKN---AGFTPQERQGFGELLQ 245
>gi|452823263|gb|EME30275.1| exodeoxyribonuclease III [Galdieria sulphuraria]
Length = 331
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 113/225 (50%), Gaps = 36/225 (16%)
Query: 44 FVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKA 103
F+TWN + VKN P F F++ PDVI LQE + L D +
Sbjct: 71 FITWNVAGMRSTVKN--PLFLGFLSKLGPDVICLQETK---------------LSDKGQV 113
Query: 104 SREEKLILMRALSSPPFKNYQIW-WSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYE 162
S E + ++LS + + IW A Y+GTA+ ++ +P V + L++ K+
Sbjct: 114 SEE----VTQSLSD---QYHDIWNHCTARKGYSGTAIFTRE--EPLSVLYGLQEE--KHN 162
Query: 163 PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 221
+GRVI E+E ++L+N Y PN G ++ R W+K + +++ + K P+I+ GD
Sbjct: 163 EEGRVITLEYEKYFLVNAYVPNAGEGLRRLNY-RIDSWEKDMCQYLCGLNQKKPVIYTGD 221
Query: 222 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKE---DWGQPGFTIAER 263
LNV+H+EID+ P+ K G+ P ++ D Q GF A R
Sbjct: 222 LNVAHQEIDIYQPK--GHEKHAGFTPQERQKFTDLLQCGFVDAFR 264
>gi|417409485|gb|JAA51243.1| Putative exodeoxyribonuclease iii, partial [Desmodus rotundus]
Length = 301
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 130/276 (47%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + L D T+ + K LK +WN + L +K + +++
Sbjct: 17 EKEATGEGSVLYEDPPDKNTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 68
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 69 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 104
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G +L ++C P KVS+ + + +++ +GRVI+AE++ F L+ Y PN G
Sbjct: 105 PSDKEGYSGVGILSRQC--PLKVSYGIGEE--EHDQEGRVIVAEYDAFVLVTAYVPNAG- 159
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 160 -RGLVRLEYRQRWDEAFRKFLKGVASHKPLVLCGDLNVAHEEIDLRNPK----------- 207
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 208 -GNKKN---AGFTPQERQGFGELLQAVPLVDSFRHL 239
>gi|403378650|ref|ZP_10920707.1| exodeoxyribonuclease [Paenibacillus sp. JC66]
Length = 256
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 105/231 (45%), Gaps = 54/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L R N F+++ D DV +QE +M
Sbjct: 1 MKLVSWNVNGL--RACVNKGCFTDYFEQIDADVFCVQETKMQEG---------------- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
LS N +W+ A K Y+GTA+ K +P V + LE+
Sbjct: 43 ------------QLSLELGDNIHSYWNYALKKGYSGTAVFSK--IEPISVRYGLEEDE-- 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
E +GR++ EF +FYL+N Y PN K + + R +W+ R +++++Q KP+I C
Sbjct: 87 -EAEGRILTLEFASFYLVNVYTPNA--KRDLSRLPYRLEWEDRFRKYIVQLDEKKPVIIC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ + K + G GFT ER +F +L
Sbjct: 144 GDLNVAHQEIDIKNA---------------KSNVGNSGFTHEERGKFNELL 179
>gi|282877708|ref|ZP_06286523.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
gi|281300280|gb|EFA92634.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
Length = 249
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 105/231 (45%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK +F D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRACVK---KDFEASFHHLDADFFCLQETKMQA-GQLDLQ---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F+ YQ +W+ AD K Y+GTA+ K P V++ L +
Sbjct: 47 ------------------FEGYQSYWNYADKKGYSGTAIYTKHT--PLNVTYGLGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E + F+L+ Y PN+ ++E R +W+ + +V+Q KP+I C
Sbjct: 85 HDHEGRVITMEMDDFFLITVYVPNS--QDELRRLDYRMQWEDDFRAYVMQLDAIKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+HEEID+ +P K + GFT ER++ +L
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRRNAGFTDEEREKMTILL 178
>gi|404485198|ref|ZP_11020397.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
gi|404338985|gb|EJZ65428.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
Length = 252
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 105/231 (45%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN N L F++ D D LQE +M A G D
Sbjct: 2 LKLISWNVNGLRACYDKG---FTDIFRQLDADFFCLQETKMQA-GQLDLQ---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F YQ +W+ A+ K Y+GTA+ + QP VS+ +++T +
Sbjct: 48 ------------------FDGYQSYWNYAEKKGYSGTAVFTR--LQPISVSYGMDRT--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR+I E E F+L+N Y PN+ +E + R W+ F+ Q + KP+I C
Sbjct: 86 HDREGRIITLEMEDFFLVNVYTPNS--QEGLKRLEYRMTWEDDFLHFLKQLKTQKPVIVC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ +P K + GFT ER +F +L
Sbjct: 144 GDLNVAHQEIDLKNP---------------KTNRKNAGFTDEERYKFTQLL 179
>gi|226309896|ref|YP_002769790.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
gi|226092844|dbj|BAH41286.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
Length = 253
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F + + D+ LQE ++
Sbjct: 1 MKLISWNVNGLRACVNKG---FYEYFKEANADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E I M + Y +W+ A+ K Y+GTA+ K +P V + LE+
Sbjct: 39 ----QEGQIEMEIGEA-----YHQYWNYAEKKGYSGTAVFTK--MEPLSVRYGLEE---D 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+EP+GRVI EF+ FYL+ Y PN K + + R +W+ R + ++LQ G KP++ C
Sbjct: 85 HEPEGRVITLEFQDFYLVTVYTPNA--KRDLSRLDYRLEWEDRFRNYLLQLDGKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ + K + G GFT ER++ ++L
Sbjct: 143 GDLNVAHQEIDLKNA---------------KSNRGNSGFTPEEREKMTSLL 178
>gi|402574713|ref|YP_006624056.1| exodeoxyribonuclease III [Desulfosporosinus meridiei DSM 13257]
gi|402255910|gb|AFQ46185.1| exodeoxyribonuclease III [Desulfosporosinus meridiei DSM 13257]
Length = 251
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 115/245 (46%), Gaps = 61/245 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VKN F +F + D+ LQE ++ A
Sbjct: 1 MKLISWNVNGIRACVKNG---FLDFFQKENADIFCLQETKVQA----------------- 40
Query: 102 KASREEKLILMRALSSPPF--KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
PF + Y +W+ A K Y+GTA+ KK +P K+ + + +
Sbjct: 41 --------------DQIPFNLEGYYQYWNFAQKKGYSGTAIFTKK--EPMKICYGIGQE- 83
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+++ +GRVI EFE Y++ Y PN+ + + R KW++ +F+ KP+I
Sbjct: 84 -EHDKEGRVITLEFEKHYVVTVYTPNS--QRGLARLEYRMKWEEEFLKFIKDLEKNKPVI 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI-- 275
+CGDLNV+HEEID+ +P N+++ GF++ ER +FG I+K I
Sbjct: 141 FCGDLNVAHEEIDLKNP------------SSNRKN---AGFSMEERNKFGEIIKSGFIDT 185
Query: 276 FLCFY 280
F FY
Sbjct: 186 FRYFY 190
>gi|426232864|ref|XP_004010439.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Ovis aries]
Length = 318
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 129/265 (48%), Gaps = 55/265 (20%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK +WN + L +K + ++I
Sbjct: 34 EKEAVGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWIK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + + ++ LS P +Q W +
Sbjct: 86 EEAPDILCLQE---------------------TKCSENKLPVELQELSGLP---HQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AE++ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEYDAFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R+ WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQCWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK----------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILK 271
NK++ GFT ER+ FG +L+
Sbjct: 225 -GNKKN---AGFTPQERQGFGELLQ 245
>gi|345314093|ref|XP_001516262.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Ornithorhynchus anatinus]
Length = 320
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 123/240 (51%), Gaps = 50/240 (20%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
S + + LK +WN + L VK + +++ PD++ LQE + A SK P
Sbjct: 55 SSSSGQPATLKICSWNVDGLRAWVKK---KGLDWVREEAPDILCLQETK--CAESKLPP- 108
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 151
ELKD LS P ++ W + AD + Y+G LL ++ +P VS
Sbjct: 109 ---ELKD---------------LSDFP---HRYWAAPADKEGYSGVGLLSRR--RPLSVS 145
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQ 210
+ + + +++ +GRVI+AEFE F L+ Y PN+G + R++WD+ + F+ Q
Sbjct: 146 YGIGEE--EHDQEGRVIVAEFEAFVLVTVYVPNSGRGLVRLDY--RQRWDQAFRRFLQAQ 201
Query: 211 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
+ KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 202 AARKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 246
>gi|6980804|pdb|1DE8|B Chain B, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980805|pdb|1DE8|A Chain A, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980812|pdb|1DE9|A Chain A, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
gi|6980813|pdb|1DE9|B Chain B, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
Length = 276
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 118/238 (49%), Gaps = 50/238 (21%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ K LK +WN + L +K + +++ PD++ LQE + P Q
Sbjct: 14 SGKPATLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETK---CSENKLPAELQ 67
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
EL P ++Q W + +D + Y+G LL ++C P KVS+ +
Sbjct: 68 EL---------------------PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGI 104
Query: 155 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSG 213
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S
Sbjct: 105 GDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASR 160
Query: 214 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+
Sbjct: 161 KPLVLCGDLNVAHEEIDLRNPK------------GNKKN---AGFTPQERQGFGELLQ 203
>gi|223935760|ref|ZP_03627676.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
gi|223895768|gb|EEF62213.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
Length = 250
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 46/234 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K N F +F+ DPD++ LQE +K P + ++L T
Sbjct: 1 MKLISWNVNGLRAVLKKN---FLDFLAKEDPDILCLQE-------TKCTPDDVEQLWPAT 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ +W+ A K Y+GTA+ K K +S SL +
Sbjct: 51 ---------------------FTTYWNTAQKKGYSGTAIFTKA----KPISVSLGINCPE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ +E+ F+L+N Y PN+ K E R++WD ++ + KP+I+C
Sbjct: 86 HDMEGRVLTSEYPEFFLVNVYVPNS--KRELTRLAYRQQWDCDFLSYLKKLEKKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEY 273
GDLNV+H EID+++P+ A K +G+ P + GF+ + F +E+
Sbjct: 144 GDLNVAHTEIDLANPK--ANVKNHGFTPEERA-----GFSTVIKAGFIDTFREF 190
>gi|347534242|ref|YP_004840912.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504298|gb|AEN98980.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 283
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 103/231 (44%), Gaps = 54/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+ F+TWN N + +KNN+ EF N + D ++QE R+ P D P ++
Sbjct: 28 MNFITWNVNGIRAILKNNFYEFFN---AANADFFSVQETRVSPGEVKLDLPSDY------ 78
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK 160
YQ W YAGTA+ K QP KV L+
Sbjct: 79 ----------------------YQYWNDAERPGYAGTAVFTKH--QPLKVMLGLDGN--D 112
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
+P+GR I E+ FYL+N YAP G EE + +WD+++ FV + + KP+I
Sbjct: 113 QDPEGRAITLEYPNFYLVNVYAPAAG--EELQRLTFKEEWDQKLITFVDKLKATKPVIIN 170
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLN++HE ID+ PE E GFT AER++ +L
Sbjct: 171 GDLNIAHEPIDIYAPE---------------EHRHAAGFTDAERQQMTQLL 206
>gi|365155344|ref|ZP_09351722.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
gi|363628500|gb|EHL79253.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
Length = 254
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V+ F ++ D D+ +QE ++ + +++ D
Sbjct: 1 MKLVSWNVNGLRACVRKG---FLDYFQEVDADIFCVQETKLQSG----------QIELD- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P V + L ++
Sbjct: 47 ------------------LKGYHQYWNYAEKKGYSGTAVFTKE--EPLSVHYGL--GDVE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
EP+GR+I EF FYL+N Y PN+ + + R +W+ RI+ +++ KP++ C
Sbjct: 85 NEPEGRIITLEFPKFYLVNVYTPNS--QRDLARLPYRLEWEDRIRSYLIDLDKDKPVLLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + G GFT ER + +L I F
Sbjct: 143 GDLNVAHQEIDLRNP---------------KSNQGNSGFTKEERAKMSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|66817330|ref|XP_642518.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
gi|161784257|sp|P51173.2|APEA_DICDI RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=Class II apurinic/apyrimidinic(AP)-endonuclease
gi|60470608|gb|EAL68586.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
Length = 361
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 51/235 (21%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
+ +K ++WN + F+ ++ +PDV+ LQE ++ N +K
Sbjct: 103 NQMKIISWNVAGFKSVLSKG---FTEYVEKENPDVLCLQETKI----------NPSNIKK 149
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
D K Y+ + AD K + GT +L KK +P ++F +
Sbjct: 150 DQMP-----------------KGYEYHFIEADQKGHHGTGVLTKK--KPNAITFGI--GI 188
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLI 217
K++ +GRVI E++ FY++NTY PN G + + R ++WD Q ++ + + KP+I
Sbjct: 189 AKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPII 248
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
WCGDLNV+H EID+ +P+ NK+ GFTI ER F L++
Sbjct: 249 WCGDLNVAHTEIDLKNPK------------TNKK---SAGFTIEERTSFSNFLEK 288
>gi|297618884|ref|YP_003706989.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
gi|297377861|gb|ADI36016.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
Length = 249
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 104/196 (53%), Gaps = 41/196 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + ++ F +F+ +PD++ LQE++ ++P +L +
Sbjct: 1 MKLISWNVNGIKAILQKG---FVDFVKQENPDILCLQEIKT------NSPSQILDLSE-- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y+ +W+ A K Y+GTA+ K+ +PK +++ ++
Sbjct: 50 ---------------------YKQYWNTASKKGYSGTAIFTKQ--KPKNITYGMDNFP-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
+ +GRVI AE++ +YL+N Y PN+ + R KWD + E++L + KPLI+C
Sbjct: 85 -DEEGRVITAEYDNYYLVNVYTPNS--QRGLTRLDYRMKWDTKFLEYLLSLNESKPLIFC 141
Query: 220 GDLNVSHEEIDVSHPE 235
GDLNV+H+EID+ +P+
Sbjct: 142 GDLNVAHKEIDLKNPK 157
>gi|113983|sp|P23196.2|APEX1_BOVIN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|118|emb|CAA40014.1| BAP 1 [Bos taurus]
Length = 318
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 130/265 (49%), Gaps = 55/265 (20%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAVGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + + ++ LS ++Q W +
Sbjct: 86 EEAPDILCLQE---------------------TKCSENKLPVELQELSG---LSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AE++ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEYDAFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK----------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILK 271
NK++ GFT ER+ FG +L+
Sbjct: 225 -GNKKN---AGFTPQERQGFGELLQ 245
>gi|160933576|ref|ZP_02080964.1| hypothetical protein CLOLEP_02430 [Clostridium leptum DSM 753]
gi|156867453|gb|EDO60825.1| exodeoxyribonuclease III [Clostridium leptum DSM 753]
Length = 261
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 54/243 (22%)
Query: 35 ENSKKD-PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
E+ K D P++F++WN N L + +PEF D D+ LQE ++
Sbjct: 4 EHEKGDYPMRFISWNVNGLRACLTKGFPEF---FQQIDADIFCLQETKLQQG-------- 52
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFS 153
+ +++L P ++ Y W S Y+GTA+ KK +P VS+
Sbjct: 53 ------------QVEMVL------PGYRQY--WNSAVKKGYSGTAVFSKK--EPLSVSYG 90
Query: 154 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-S 212
L +++ +GRVI EF FYL Y PN+ +E R +W+ ++++ S
Sbjct: 91 L--GIEEHDQEGRVITLEFPAFYLTTVYTPNS--QEGLKRLSYRMEWEDAFRDYLKGLDS 146
Query: 213 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
KP++ CGD+NV+H+EID+ +P K + GFT ER+RF +L
Sbjct: 147 KKPVVVCGDMNVAHQEIDLKNP---------------KTNRKNAGFTDEERERFSQLLAA 191
Query: 273 YLI 275
I
Sbjct: 192 GFI 194
>gi|223278400|ref|NP_788782.2| DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
gi|113912167|gb|AAI22611.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Bos taurus]
gi|296483354|tpg|DAA25469.1| TPA: DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
gi|440900925|gb|ELR51950.1| DNA-(apurinic or apyrimidinic site) lyase [Bos grunniens mutus]
Length = 318
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 130/265 (49%), Gaps = 55/265 (20%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAVGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + + ++ LS ++Q W +
Sbjct: 86 EEAPDILCLQE---------------------TKCSENKLPVELQELSG---LSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AE++ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEYDAFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK----------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILK 271
NK++ GFT ER+ FG +L+
Sbjct: 225 -GNKKN---AGFTPQERQGFGELLQ 245
>gi|227509865|ref|ZP_03939914.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190789|gb|EEI70856.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 252
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK +F+ D D +QE +M K
Sbjct: 1 MKFISWNVNGLRAVVKK---DFAETFQKLDADFFCIQETKMQEGQLK------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P ++ Y ++ A+ K Y+GTA+ K +P VS+ ++ A +
Sbjct: 45 -------------LDLPGYRQY---FNYAERKGYSGTAIFAKD--EPLTVSYGIQ--APE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR I E+ FYL+ +Y PN+G K + F R WDK ++ Q S KP+I C
Sbjct: 85 FDHEGRAITLEYPNFYLVTSYVPNSGAKLKRLDF--RMGWDKAFHAYLNQLDSHKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GFT ER+ F +L + + F
Sbjct: 143 GDLNVAHHEIDLKNP---------------KSNHHNAGFTDEERQSFTKLLDQGFMDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 HFY 190
>gi|56963720|ref|YP_175451.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
gi|56909963|dbj|BAD64490.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
Length = 260
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L VK F +F D DV LQE +
Sbjct: 1 MKFVSWNVNGLRACVKKG---FLDFFQQVDADVFCLQETK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L + S Y+ +W+ A+ K Y+GTA+ K P V++ +
Sbjct: 38 ---------LQKGQISLELPGYEQYWNDAERKGYSGTAIFTKH--SPLSVTYGIGDHFP- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWC 219
E +GRVI EFET+Y++ Y PN K + + R +W+K +E++ L + KP+++C
Sbjct: 86 -ENEGRVITLEFETYYVVTMYTPNA--KRDLSRLPYRLQWEKAAREYLTLLATQKPVVFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+ IDV + ++ + G GFT ER FG +L+ + F
Sbjct: 143 GDLNVAHQPIDVRN---------------DRANVGNSGFTDEERAEFGKLLEAGFVDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 HFY 190
>gi|229366136|gb|ACQ58048.1| DNA-apurinic or apyrimidinic site lyase [Anoplopoma fimbria]
Length = 310
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 52/232 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +WN + L VK N +++ PDV+ LQE T
Sbjct: 55 MKITSWNVDGLRAWVKKN---GLDWVREEAPDVLCLQE---------------------T 90
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 159
K S EK + S P + + +W+ +D K Y+G A+L K +P KV++ + K
Sbjct: 91 KCS--EKALPAEITSMPEYPHK--YWAASDEKQGYSGVAMLCKT--EPLKVTYGIGKE-- 142
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GRVI AEF FYL+ TY PN+ + R+ WD+ + ++ + KPL+
Sbjct: 143 EHDKEGRVITAEFPNFYLVTTYVPNS--SKGLVRLDYRKTWDEDFRAYLSELDMQKPLVL 200
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
CGDLNV+H+EID+ +P+ NK++ GFT+ ER+ FG +L
Sbjct: 201 CGDLNVAHQEIDLKNPK------------GNKKN---AGFTVEEREGFGQLL 237
>gi|227522924|ref|ZP_03952973.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
gi|227089953|gb|EEI25265.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
Length = 252
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK +F+ D D +QE +M K
Sbjct: 1 MKFISWNVNGLRAVVKK---DFAEIFQKLDADFFCIQETKMQEGQLK------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P ++ Y ++ A+ K Y+GTA+ K +P VS+ ++ A +
Sbjct: 45 -------------LDLPGYRQY---FNYAERKGYSGTAIFAKD--EPLTVSYGIQ--APE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR I E+ FYL+ +Y PN+G K + F R WDK ++ Q S KP+I C
Sbjct: 85 FDHEGRAITLEYPNFYLVTSYVPNSGAKLKRLDF--RMGWDKAFHAYLNQLDSHKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P+ + GFT ER+ F +L + + F
Sbjct: 143 GDLNVAHHEIDLKNPQ---------------SNHHNAGFTDEERQSFTKLLDQGFMDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 HFY 190
>gi|421858846|ref|ZP_16291099.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
gi|410831608|dbj|GAC41536.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
Length = 257
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 113/236 (47%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D D+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVNKG---FLDYFKASDADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E I + L P Y+ +W+ A+ K Y+GTA+ + +P+ V + +E+ A
Sbjct: 39 ----QEGQIGIE-LGEP----YRKYWNYAEKKGYSGTAIFTR--IEPQSVRYGMEEDA-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
EP+GR+I EFE+FYL+ Y PN K + + + R +W++R + ++ + KP+I C
Sbjct: 86 -EPEGRIITLEFESFYLVTVYTPNA--KRDLSRLEYRLEWEERFRRYLQELDAHKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ + K + G GFT ER + +L+ I
Sbjct: 143 GDLNVAHQEIDLKNA---------------KSNQGNSGFTPEERDKMTRLLEAGFI 183
>gi|169334284|ref|ZP_02861477.1| hypothetical protein ANASTE_00682 [Anaerofustis stercorihominis DSM
17244]
gi|169259001|gb|EDS72967.1| exodeoxyribonuclease III [Anaerofustis stercorihominis DSM 17244]
Length = 251
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 107/233 (45%), Gaps = 57/233 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K VTWN N L V F +F D D+ ++QE ++ + D P
Sbjct: 1 MKLVTWNVNGLRACVNKG---FMDFFNEVDSDIFSVQETKLQKGQIEMDIP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
Y+ +W A+ K Y+GTA K +P V LE+
Sbjct: 49 ---------------------GYEEYWDYAEKKGYSGTATFSK--IKPISVKTGLEEE-- 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
K+ +GRVI AE+E FYL+N Y PN+ + E R +W+ +++ + KP+I
Sbjct: 84 KFSKEGRVITAEYENFYLVNVYTPNS--QNELKRLDYRMEWEDYFADYLCELDKVKPVIM 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
CGDLNV+H EID+ +P+ NK++ GFTI ER + ++LK
Sbjct: 142 CGDLNVAHREIDLKNPK------------TNKKN---AGFTIEERDKMTSLLK 179
>gi|354580157|ref|ZP_08999062.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
gi|353202588|gb|EHB68037.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
Length = 255
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V F ++ D D+ +QE ++ + EL D
Sbjct: 1 MKLVSWNVNGLRACVNKG---FLDYFKQTDADIFCVQETKLQEG------QIELELGSD- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y+ +W+ A K Y+GTA+ + +P V + +E+
Sbjct: 51 ---------------------YRQYWNYAQKKGYSGTAVFTR--LEPLSVRYGIEEDE-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
EP+GR+I EF+ FYL+N Y PN K + + R +W++R + ++ Q KP+I C
Sbjct: 86 -EPEGRIITLEFQHFYLVNVYTPNA--KRDLSRLSYRLEWEERFRRYLQQLDAVKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ + K + G GFT+ ER + +L I F
Sbjct: 143 GDLNVAHQEIDLKNA---------------KSNLGNSGFTLEERGKMTDLLAAGFIDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 FFY 190
>gi|260808574|ref|XP_002599082.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
gi|229284358|gb|EEN55094.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
Length = 272
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 107/233 (45%), Gaps = 49/233 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN + L VK N +I DPD+I LQE + KD PK
Sbjct: 14 LKIASWNVDGLRGTVKKNG---HAYIPQEDPDIICLQETKCT---EKDVPKE-------- 59
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++ + W+S + K YAGTALL K +P KV++ + +
Sbjct: 60 -------------FTATVEGYHGYWYSPTEKKGYAGTALLSKT--KPIKVTYGI--GVDE 102
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI AEF+ FY++ Y PN G R WD+ ++ + KP++ C
Sbjct: 103 HDDEGRVITAEFDDFYMVTAYVPNAG--RGLVRLDYRGTWDEAFTAYLKKLDKKKPVVLC 160
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
GDLNV+H EID+ +P+ NK PGFT ER+ F +L E
Sbjct: 161 GDLNVAHNEIDLKNPK------------GNKNK--TPGFTDKEREGFTTLLDE 199
>gi|449664158|ref|XP_002161039.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Hydra
magnipapillata]
Length = 352
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 114/241 (47%), Gaps = 39/241 (16%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ + LK +WN L V N N++ DPDV+ LQE + D P
Sbjct: 82 DGRTSTLKICSWNVAGLRAWVNKN---GLNYVIEEDPDVLCLQETK---CTENDLPGQVL 135
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
++K+ K + +S+ + Y W + +G +L K +P KV++ L
Sbjct: 136 QMKNGPKVTN---------VSNSGY--YMYWCNAKKKGCSGVSLWCK--LKPLKVTYGL- 181
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 214
+++ +GR+I AEFE +Y++ TY PN+G K + RR W+ + +V + K
Sbjct: 182 -GIKEHDSEGRLITAEFEKYYIITTYVPNSGQKLIRLDY--RRIWNTDYKNYVGELKKKK 238
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYL 274
P+I CGD NV+H EID+++P NK + GFT ER F A+L++
Sbjct: 239 PVIMCGDFNVAHTEIDIANPN------------SNKRN---AGFTEEERSDFTALLEDGY 283
Query: 275 I 275
I
Sbjct: 284 I 284
>gi|171915906|ref|ZP_02931376.1| exodeoxyribonuclease III [Verrucomicrobium spinosum DSM 4136]
Length = 250
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 109/236 (46%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + + E+ +T D DVI LQEV+
Sbjct: 1 MKLVSWNVNGIRACMDKGLREY---LTACDADVICLQEVK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ EE+ L FK+YQ+ W+ A K Y+GTA+L ++ + + +++
Sbjct: 38 --AMEEQAGL------EWFKDYQVVWNAAQKKGYSGTAILTRQPIKSHAIGMGIDE---- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI EF +Y++N Y PN + E R WD + ++ KP++ C
Sbjct: 86 HDKEGRVITVEFPDYYVVNVYTPNA--QAELARLPYRLLWDDAFRLYLKNLEQTKPVLAC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H EID++ P KE+ PGF+ ER FG +L+ +
Sbjct: 144 GDLNVAHNEIDIARP---------------KENRFSPGFSDQERASFGKLLESGFV 184
>gi|347753480|ref|YP_004861045.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
gi|347585998|gb|AEP02265.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
Length = 251
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L VK F F D D+ +QE ++ A
Sbjct: 1 MKFVSWNVNGLRACVKKG---FLAFFAETDADIFCVQETKLQAG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++ L Y +W+ A+ K Y+GTA+ KK +P V + + + +
Sbjct: 42 ------QIAL-------DLDGYYQYWNYAERKGYSGTAVFTKK--EPLSVRYGVGED--R 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
EP+GR++ E+E FYL+N Y PN+ + + R +W+ R++ ++ + KP+I C
Sbjct: 85 TEPEGRILTLEYEDFYLVNVYTPNS--QRDLARLGYRLEWEDRMRAYLTELDKKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GD+NV+H+EID+ + K + G GFT ER + +L I F
Sbjct: 143 GDMNVAHQEIDLKNA---------------KNNVGNSGFTAEERGKMTGLLNSGFIDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|297824099|ref|XP_002879932.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
gi|297325771|gb|EFH56191.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
Length = 550
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 114/236 (48%), Gaps = 57/236 (24%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K +TWN N L LL++++ + NF D++ LQE ++ KD +
Sbjct: 288 VKVMTWNVNGLRALLKLESFSALQLAQRENF------DILCLQETKLQV---KDVEEIKN 338
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFS 153
L D S +WS + SK Y+GTA++ + +P V +
Sbjct: 339 TLIDGYDHS---------------------FWSCSVSKLGYSGTAIISR--IKPLSVRYG 375
Query: 154 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 212
+ ++ +GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + +
Sbjct: 376 TGLSGSDHDMEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELEK 434
Query: 213 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
KP++ GDLN +HEEID+ +P A K N GFTI ER+ FGA
Sbjct: 435 SKPVVLTGDLNCAHEEIDIFNP---AGNKRNA------------GFTIEERQSFGA 475
>gi|184154634|ref|YP_001842974.1| exodeoxyribonuclease [Lactobacillus fermentum IFO 3956]
gi|227513882|ref|ZP_03943931.1| exodeoxyribonuclease III [Lactobacillus fermentum ATCC 14931]
gi|183225978|dbj|BAG26494.1| exodeoxyribonuclease [Lactobacillus fermentum IFO 3956]
gi|227087743|gb|EEI23055.1| exodeoxyribonuclease III [Lactobacillus fermentum ATCC 14931]
Length = 279
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++F++WN +S+ + I PDVIA+QE ++ +G K HQ
Sbjct: 1 MRFISWNIDSINAALTGTSARAEETRAVLEKIKAAAPDVIAIQETKLSKSGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ + F Y + W A YAGT L K+ PK V+
Sbjct: 58 ------------------GVLAELFAGYTVVWRSSVEPARKGYAGTMYLYKESLTPK-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EFE FYL Y PN+G + R++WD R +E++ +
Sbjct: 99 YPTIGAPEPMDEEGRIITLEFENFYLTEVYTPNSGTGLKR--LAERQEWDDRYREYLTEL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+HEEID++HP + GFT ER++F A+L
Sbjct: 157 DRQKPVIASGDFNVAHEEIDLAHP---------------ANNHHSAGFTDEEREKFTALL 201
>gi|385811883|ref|YP_005848274.1| exodeoxyribonuclease [Lactobacillus fermentum CECT 5716]
gi|299782782|gb|ADJ40780.1| Exodeoxyribonuclease [Lactobacillus fermentum CECT 5716]
Length = 279
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++F++WN +S+ + I PDVIA+QE ++ +G K HQ
Sbjct: 1 MRFISWNIDSINAALTGTSARAEETRAVLEKIKAAAPDVIAIQETKLSKSGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ + F Y + W A YAGT L K+ PK V+
Sbjct: 58 ------------------GVLAELFAGYTVVWRSSVEPARKGYAGTMYLYKESLTPK-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EFE FYL Y PN+G + R++WD R +E++ +
Sbjct: 99 YPTIGAPEPMDKEGRIITLEFENFYLTEVYTPNSGTGLKR--LAERQEWDDRYREYLTEL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+HEEID++HP + GFT ER++F A+L
Sbjct: 157 DRQKPVIASGDFNVAHEEIDLAHP---------------ANNHHSAGFTDEEREKFTALL 201
>gi|452820422|gb|EME27464.1| exodeoxyribonuclease III [Galdieria sulphuraria]
Length = 307
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 121/261 (46%), Gaps = 54/261 (20%)
Query: 19 LSPSKKDGETTETSSEENS-KKDP---LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDV 74
LSP+KK T S ENS KKD LKF++WN NSL ++ + N ++ DPD
Sbjct: 21 LSPTKKKNCTQLDSITENSPKKDTETLLKFLSWNVNSLKRVLERK--QLVNLVSQEDPDF 78
Query: 75 IALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK- 133
I LQE ++ E+K+ A P +K + ++ ++K
Sbjct: 79 ICLQETKLT----------------------EDKV--PGAFLLPQYKKF---FNCCETKR 111
Query: 134 -YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEEN 192
Y+GTAL K P V E ++ GR+I+AE+E FY+ + Y PN+G K +
Sbjct: 112 GYSGTALFSK--MAPIAVLKDFEGVYSEHNKTGRLIVAEYENFYVASVYVPNSGDKLKNL 169
Query: 193 SFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKE 251
+ R WD ++ + KP++ GDLNV+H++IDV PE +
Sbjct: 170 EY-RVHSWDPSFCSYICELQMKKPIVLLGDLNVAHQDIDVYAPERLGS------------ 216
Query: 252 DWGQPGFTIAERKRFGAILKE 272
+ GF +ER F L+E
Sbjct: 217 ---KAGFVQSERNNFSKFLEE 234
>gi|227512799|ref|ZP_03942848.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
gi|227083999|gb|EEI19311.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
Length = 252
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK +F+ D D +QE +M K
Sbjct: 1 MKFISWNVNGLRAVVKK---DFAEIFQKLDADFFCIQETKMQEGQLK------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P ++ Y ++ A+ K Y+GTA+ K +P VS+ ++ A +
Sbjct: 45 -------------LDLPGYRQY---FNYAERKGYSGTAIFAKD--EPLTVSYGIQ--APE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR I E+ FYL+ +Y PN+G K + F R WDK ++ Q S KP+I C
Sbjct: 85 FDHEGRAITLEYPNFYLVTSYVPNSGAKLKRLDF--RMGWDKAFHAYLNQLDSHKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P+ + GFT ER+ F +L + + F
Sbjct: 143 GDLNVAHYEIDLKNPQ---------------SNHHNAGFTDEERQSFTKLLDQGFMDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 HFY 190
>gi|390952993|ref|YP_006416751.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
gi|390418979|gb|AFL79736.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
Length = 254
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 37/192 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + K +F + I+ DPDV+ LQE T
Sbjct: 1 MKIISWNVNGVRAITK---KDFFDDISKMDPDVLCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA EE + ALS +Y +++ A+ K Y+G A+L KK +P V++ + +
Sbjct: 37 KAQNEE---VEEALSE--MTDYHQYYNSAERKGYSGVAILSKK--EPISVTYDM--GIAE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI AE++TFYL+N Y PN+G K E + R+ WD ++ K +I C
Sbjct: 88 HDTEGRVICAEYDTFYLVNVYVPNSGQKLERLDY--RKGWDTDFHNYLKNIEKTKSVILC 145
Query: 220 GDLNVSHEEIDV 231
GDLNV+H+ ID+
Sbjct: 146 GDLNVAHQAIDL 157
>gi|373493819|ref|ZP_09584429.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
gi|371969524|gb|EHO86969.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
Length = 249
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 59/232 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KFV+WN N L +K F + + FD D +QE +M + D P HQ
Sbjct: 1 MKFVSWNVNGLRAVLKKG---FEDIVKEFDADFFCIQETKMQEGQADVDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
++S A+ K Y+GTA+ K +P V+++ E
Sbjct: 53 -------------------------YFSYAEKKGYSGTAIFTKH--EPLSVTYNFEG--- 82
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
++ +GR +L E++ FYLLN Y PN + E + R +W+ ++ + + + K ++
Sbjct: 83 -HDDEGRAVLLEYDKFYLLNVYVPNA--QPELKRLEYRMQWEDDLRAMLSELAKKKHVVM 139
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
CGDLNV+HEEID+ +P K + G PGF+ ER + +L
Sbjct: 140 CGDLNVAHEEIDLKNP---------------KTNRGNPGFSDEERAKMTELL 176
>gi|440801517|gb|ELR22535.1| exodeoxyribonuclease III, putative [Acanthamoeba castellanii str.
Neff]
Length = 317
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 106/236 (44%), Gaps = 50/236 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L K ++ DPDVI QE T
Sbjct: 61 MKLISWNLNGLNAVHKKG--HLVKYVRDEDPDVICFQE---------------------T 97
Query: 102 KASREEKLILMRALSSPPFKNYQIW-WSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK 160
K + + P ++ W S+ YAGTA K +P V++ + +
Sbjct: 98 KTQTSTAIAQLLGNDYP----HEYWNHSVNKLGYAGTATFSK--VKPVSVTYGI--GIAE 149
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI EF+ FYL+NTY PN G K E + R++W+K ++ KP++WC
Sbjct: 150 HDGEGRVITTEFDRFYLVNTYIPNAGQKLERLGY--RQEWNKDFLAYLKNLEQTKPVVWC 207
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H +ID+++P K + GFT ER+ FG +L+ +
Sbjct: 208 GDLNVAHHDIDIANP---------------KTNQKTAGFTKEERRDFGQLLESGFV 248
>gi|160879133|ref|YP_001558101.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
gi|160427799|gb|ABX41362.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
Length = 250
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F +F D D+ +QE ++ A +++ D
Sbjct: 1 MKLISWNVNGIRACVQKG---FCDFFKEVDADIFCIQESKLQAG----------QIELD- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F+ Y +W+ A+ K Y+GTA+ KK +P +V++ + +
Sbjct: 47 ------------------FEGYYQYWNYAEKKGYSGTAIFTKK--EPLQVTYGM--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ + E R +W+ + F+ + KP++ C
Sbjct: 85 HDKEGRVITLEFEDFYMVTVYTPNS--QNELARLSYRMEWEDEFRRFLKKLEETKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P ++N GFTI ER +F +L+ I F
Sbjct: 143 GDLNVAHKEIDLKNPN---TNQMNA------------GFTIEERTKFSELLEAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|227432019|ref|ZP_03914038.1| exodeoxyribonuclease III [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227352217|gb|EEJ42424.1| exodeoxyribonuclease III [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 285
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 119/250 (47%), Gaps = 60/250 (24%)
Query: 36 NSKKDP-LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG- 86
NS+ D LKF++WN +S+ +R + W N I T PDV A+QE ++ + G
Sbjct: 7 NSQGDENLKFISWNIDSINAAVEHKSVRGEMTWSTL-NEIATIRPDVFAIQETKLKSTGL 65
Query: 87 SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWW--SLADSKYAGTALLVKKC 144
+K EL F Y ++ S A S Y+GT +L K
Sbjct: 66 TKKQATAIAEL----------------------FPEYHLYVNSSTARSGYSGTMVLSK-- 101
Query: 145 FQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWD 201
+P +V + + +GR+I EF TF+L Y PN+G +S R R +WD
Sbjct: 102 VEPIQVEYPTIGAPGPMDLEGRIITLEFPTFFLSTVYTPNSG-----SSLIRLPERGEWD 156
Query: 202 KRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTI 260
+ +E++ + KP+I+ GD+NV+H+EID+ +P+ PN+ GFT
Sbjct: 157 DKYREYIKRLDATKPVIFSGDMNVAHQEIDLKNPK------------PNRH---SAGFTD 201
Query: 261 AERKRFGAIL 270
ER++F A+L
Sbjct: 202 QEREKFSALL 211
>gi|403223464|dbj|BAM41595.1| endonuclease [Theileria orientalis strain Shintoku]
Length = 533
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 120/259 (46%), Gaps = 28/259 (10%)
Query: 37 SKKDPLKFVTWNANSLL--LRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGS-KDAPKN 93
S DP +TWN + L + + W F + DPD++ LQ+V++ ++ AP+
Sbjct: 191 SDDDPRTILTWNVSGLQNSMSKRAVWEPFVQMLKQHDPDIVILQDVKLCSSKILGTAPRL 250
Query: 94 HQELKDDTKASREEKLI----LMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKK 149
+ + +S ++ + L+ L FK Y SL+ + AG + +K F+ K
Sbjct: 251 YMRVFGGYVSSSYDQEVHDADLVIKLQKTIFKKYYCIHSLSAWRVAGQLVFIKNEFKYLK 310
Query: 150 VSFSLE-KTALKYE-PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF 207
+ F+L KT KY P+GR I+ +F++FYLL+ +P GW S + R +WD+ + F
Sbjct: 311 IRFNLSIKTNAKYHHPEGRCIIVQFKSFYLLSLLSPLQGWVNR--SVEMRSRWDRELARF 368
Query: 208 ---------------VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 252
+ K I G+LN + E+ID+S PE K V +++
Sbjct: 369 LDNSKSNLPRSLLYHIFNSEDKATIISGNLNCAPEDIDLSDPEKLRMEK--SVVLHKQDE 426
Query: 253 WGQPGFTIAERKRFGAILK 271
G PG +R + I K
Sbjct: 427 VGFPGSRDIDRIGYYLITK 445
>gi|254479049|ref|ZP_05092404.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
gi|214035005|gb|EEB75724.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
Length = 258
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 115/243 (47%), Gaps = 54/243 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L ++ F ++ D D+ +QE ++ QE + D
Sbjct: 1 MKLVSWNVNGLRACLQKG---FMDYFKAIDADIFCIQETKL------------QENQKD- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ K ++P VS+ +
Sbjct: 45 -------------IEGLDLNGYYAFWNFAEKKGYSGTAVFTK--YKPLSVSYGIGTP--H 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI E+E F+L+NTY PN+ + R +W++ + ++L+ S KP+I C
Sbjct: 88 HDKEGRVITLEYEKFFLVNTYTPNS--QRGLTRLDYRMQWEEDFRSYLLKLDSLKPVILC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P AA + N GFT ER++ +L I F
Sbjct: 146 GDLNVAHQEIDIKNP---AANRRNA------------GFTDEEREKMTILLNSGFIDTFR 190
Query: 278 CFY 280
FY
Sbjct: 191 YFY 193
>gi|218231608|ref|YP_002368543.1| exodeoxyribonuclease III [Bacillus cereus B4264]
gi|218159565|gb|ACK59557.1| exodeoxyribonuclease III [Bacillus cereus B4264]
Length = 252
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 112/236 (47%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + EF ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--EFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L+ +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLDIE--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F +IL+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSSILEEGFI 184
>gi|312898827|ref|ZP_07758215.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
gi|310619989|gb|EFQ03561.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
Length = 250
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 42/196 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N L +K +PE D D+ LQE ++ A + D P
Sbjct: 1 MKFISWNVNGLRAVMKKGFPEI---FKELDADIFCLQETKLQAGQIEMDLP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
Y+ +W+ AD K Y+GTA+ + +P VS+ +
Sbjct: 49 ---------------------GYEQYWNYADKKGYSGTAIFTR--IKPLSVSYGMNID-- 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GR+I EFE FY + Y PN+ + E R +W+ + +V + + KP+I+
Sbjct: 84 EHDHEGRLITLEFEDFYFITCYTPNS--QSELARLDYRMRWEDDFRNYVTELNRTKPVIF 141
Query: 219 CGDLNVSHEEIDVSHP 234
CGDLNV+HEEID+ +P
Sbjct: 142 CGDLNVAHEEIDLKNP 157
>gi|336396024|ref|ZP_08577423.1| exonuclease III [Lactobacillus farciminis KCTC 3681]
Length = 253
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 110/238 (46%), Gaps = 59/238 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNHQELK 98
+K ++WN N L VK +F+TTF + DV ++QE +M AG D
Sbjct: 1 MKLISWNVNGLRAVVK------KDFVTTFQQLNADVFSIQETKM-QAGQLD--------- 44
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTA 158
L P + Y ++ Y+GTA+ K K +E+
Sbjct: 45 ----------------LDLPGYHQY--FFYAKKKGYSGTAVFSKAEPISVKQGLGIEE-- 84
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLI 217
++ +GR I EF +YL+N+Y PN+ K + + R ++D ++E++LQ S KP+I
Sbjct: 85 --FDDEGRTITLEFPDYYLINSYTPNSQPKLKRVDY--RMRYDDVLREYMLQLSADKPVI 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
CGDLNV+HEEID+ +P K + PGF+ ER +F +L I
Sbjct: 141 LCGDLNVAHEEIDLKNP---------------KTNHKNPGFSDQERDKFSELLDSGFI 183
>gi|210622632|ref|ZP_03293292.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
gi|210154133|gb|EEA85139.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
Length = 250
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 108/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V F +F D D+ LQE ++ P+
Sbjct: 1 MKFISWNVNGLRACVTKG---FMDFFNEVDADIFCLQETKLQEGQIDLNPEG-------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y+ +W+ AD K Y+GTA+ KK +P V++ + +
Sbjct: 50 ---------------------YESYWNYADKKGYSGTAIFTKK--KPLSVAYGI--GIDE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI EFE FY + Y PN+ + E + R +W+ + ++ S KP++ C
Sbjct: 85 HDHEGRVITLEFEDFYFVTVYTPNS--QTELKRLEYRMRWEDDFRAYLKNLDSKKPVVMC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER +F L+ I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERNKFTEFLESGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|282880102|ref|ZP_06288822.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
gi|281305975|gb|EFA98015.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
Length = 249
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 107/236 (45%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK N F D D LQE +M QE + D
Sbjct: 1 MKFISWNVNGLRACVKKN---FQESFQQLDADFFCLQETKM------------QEGQLDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ F Y +W+ A+ K Y+GTA+ K +P VS+ L +
Sbjct: 46 Q-----------------FPGYTSYWNYAEKKGYSGTAIYTKH--KPIHVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E E F+L+ Y PN+ ++E R KW+ + ++ Q KP+I C
Sbjct: 85 HDQEGRVITLEMEDFFLITVYVPNS--QDELKRLDYRMKWEDDFRAYITQLDQIKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+HEEID+ +P+ NK + GFT ER + +L I
Sbjct: 143 GDLNVAHEEIDLKNPK------------TNKRN---AGFTDEERNKMTRLLDNGFI 183
>gi|116618622|ref|YP_818993.1| exonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
gi|116097469|gb|ABJ62620.1| Exonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
Length = 272
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 114/243 (46%), Gaps = 59/243 (24%)
Query: 42 LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKN 93
+KF++WN +S+ +R + W N I T PDV A+QE ++ + G +K
Sbjct: 1 MKFISWNIDSINAAVEHKSVRGEMTWSTL-NEIATIRPDVFAIQETKLKSTGLTKKQATA 59
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWW--SLADSKYAGTALLVKKCFQPKKVS 151
EL F Y ++ S A S Y+GT +L K +P +V
Sbjct: 60 IAEL----------------------FPEYHLYVNSSTARSGYSGTMVLSK--VEPTQVE 95
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
+ + +GR+I EF TF+L Y PN+G +S R R +WD + +E++
Sbjct: 96 YPTIGAPGSMDLEGRIITLEFPTFFLSTVYTPNSG-----SSLIRLPERGEWDDKYREYI 150
Query: 209 LQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
KP+I+ GD+NV+H+EID+ +P+ PN+ GFT ER++F
Sbjct: 151 KTLDATKPVIFSGDMNVAHQEIDLKNPK------------PNRH---SAGFTDQEREKFS 195
Query: 268 AIL 270
A+L
Sbjct: 196 ALL 198
>gi|23097966|ref|NP_691432.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
gi|22776190|dbj|BAC12467.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
Length = 269
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+ F++WN N + V+ F +F D +QE ++
Sbjct: 1 MHFISWNVNGIRACVRKG---FLDFFQEMGADFFCIQESKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L Y +W+ A+ K Y+GTA+ K ++P V + ++
Sbjct: 39 ---QEGQIQL-------DLDGYYQYWNYAERKGYSGTAIFTK--WEPLHVFYGIDSN--N 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
YEP+GR+I E+E+FYL+N Y PN+ K + + R +W+ R+ +++ + + KPL++C
Sbjct: 85 YEPEGRIITLEYESFYLVNVYTPNS--KRDLTRLEDRLEWEDRLFDYLQKLNKKKPLVYC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H EID+ + +K + G GFT ER + +L
Sbjct: 143 GDLNVAHHEIDLRN---------------DKTNHGNSGFTKEERSKMSRLL 178
>gi|167771017|ref|ZP_02443070.1| hypothetical protein ANACOL_02371 [Anaerotruncus colihominis DSM
17241]
gi|167666687|gb|EDS10817.1| exodeoxyribonuclease III [Anaerotruncus colihominis DSM 17241]
Length = 250
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 97/196 (49%), Gaps = 40/196 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + F +F + D D + LQE +M HQE D
Sbjct: 1 MKLVSWNVNGLRACLGKG---FLDFFSAADADAVCLQETKM-----------HQEQAD-- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P YQ +W+ A+ K Y+GTA+ + P V++ + +
Sbjct: 45 -------------LELP---GYQQFWNSAEKKGYSGTAVFTR--VPPLNVTYGIGMA--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E+E FYL+N Y PN + E + R KW+ + +++ K P++ C
Sbjct: 85 HDSEGRVITVEYEPFYLVNCYTPNA--QRELARLEYRMKWEDDFRAYLMSLDAKKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPE 235
GDLNV+H+EID+ +P+
Sbjct: 143 GDLNVAHQEIDLKNPK 158
>gi|319652957|ref|ZP_08007062.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
gi|317395306|gb|EFV76039.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
Length = 251
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK F ++ D D+ +QE ++
Sbjct: 1 MKLVSWNVNGIRACVKKG---FMDYFKEVDADIFCIQESKLQEG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ +LIL + Y +W+ A K Y+GTA+ KK +P V + L +
Sbjct: 42 ----QIELIL---------EGYHQYWNYAIKKGYSGTAVFTKK--EPLSVRYGLGDN--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
EP+GR++ E+E FYL+N Y PN+ + + R +W++RI+E++L KP+I C
Sbjct: 85 TEPEGRILTLEYEGFYLVNVYTPNS--QRDLARLPYRLEWEERIREYLLGLDQIKPVIMC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H EID+ + K + G GFT ER + +L
Sbjct: 143 GDLNVAHFEIDLKNA---------------KSNRGNSGFTDEERGKMTRLL 178
>gi|409386093|ref|ZP_11238562.1| Exodeoxyribonuclease III [Lactococcus raffinolactis 4877]
gi|399206574|emb|CCK19477.1| Exodeoxyribonuclease III [Lactococcus raffinolactis 4877]
Length = 277
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 112/244 (45%), Gaps = 58/244 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWP--EFSNFITT----FDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL + ++ P + S + T D DVIALQE ++ A G K H
Sbjct: 3 MKFISWNIDSLNAALTSDSPRAQLSQAVLTHLASLDADVIALQETKLSAKGPT---KKHL 59
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ A R F Y I W A YAGT L K+ ++S
Sbjct: 60 EIL----AER--------------FPGYAIAWRSSVEPARKGYAGTMFLYKQ-----ELS 96
Query: 152 FSLEKTAL----KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF 207
++E + + +GR+I EF+ FYL Y PN G + R+ WD++ +++
Sbjct: 97 VTIETPEIGAPSTMDSEGRIITLEFDNFYLTQVYTPNAG--DGLKRLAERQIWDEKYRDY 154
Query: 208 VLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
+L+ KP+I GD NV+H EID++HP + PGFT ER+ F
Sbjct: 155 LLELDAKKPVIATGDYNVAHFEIDLAHP---------------NNNRNSPGFTDEERQGF 199
Query: 267 GAIL 270
+L
Sbjct: 200 TNLL 203
>gi|296090736|ref|NP_001171688.1| DNA-(apurinic or apyrimidinic site) lyase [Gallus gallus]
gi|194722849|dbj|BAG66138.1| APEX nuclease [Gallus gallus]
Length = 300
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 111/241 (46%), Gaps = 52/241 (21%)
Query: 34 EENSKKDPLKF--VTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAP 91
EE + P F +WN + L V+ ++ + + PDV+ LQE + G++ P
Sbjct: 35 EETADGRPYNFKVTSWNVDGLRAWVRKGGLQW---LQSEAPDVVCLQETK---CGAESIP 88
Query: 92 KNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS-LADSKYAGTALLVKKCFQPKKV 150
LS P ++ W S + S Y+G LL + P +V
Sbjct: 89 SE---------------------LSQLPHLPHKFWGSAVGRSGYSGVGLLSRTA--PIRV 125
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
+ + +++ +GRV+ AEF + Y+++ Y PN+G N Q R++WD + F+ +
Sbjct: 126 THGIGIE--EHDAEGRVLTAEFPSVYVVSAYVPNSG--RGLNRLQYRQRWDGAFKSFLQR 181
Query: 211 CSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
KP++ CGDLNV+H EID+ +P K + PGFT ER FGA+
Sbjct: 182 LDAQKPVVLCGDLNVAHREIDLRNP---------------KSNRRSPGFTQEERDAFGAL 226
Query: 270 L 270
L
Sbjct: 227 L 227
>gi|387015594|gb|AFJ49916.1| DNA-(apurinic or apyrimidinic site) lyase-like [Crotalus
adamanteus]
Length = 316
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 121/246 (49%), Gaps = 52/246 (21%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
+ + KK LK +WN + + VK E+ N DPDV+ LQE
Sbjct: 52 TSSSGKKYTLKVTSWNVDGIRAWVKKKGLEWVN---KEDPDVLCLQE------------- 95
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKV 150
TK + ++ +R L+ P K +W+ ++ K Y+G ALL K +P V
Sbjct: 96 --------TKCAEKQLPADIRDLAEYPHK----FWACSNDKEGYSGVALLSKN--KPLDV 141
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
++ + + +++ +GRVI AEF +++L+ TY PN G + R++WD+ + ++
Sbjct: 142 TYGIGEE--EHDKEGRVITAEFSSYFLVTTYVPNAG--RGLVRLEYRQRWDEAFRSYLKG 197
Query: 211 CSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
+ KPLI CGDLNV+H+EID+ +P+ NK++ GFT ER F +
Sbjct: 198 LAARKPLILCGDLNVAHQEIDLKNPK------------GNKKN---AGFTPEERAGFTQL 242
Query: 270 LKEYLI 275
L+ +
Sbjct: 243 LEAGFV 248
>gi|304407353|ref|ZP_07389006.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
gi|304343794|gb|EFM09635.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
Length = 255
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 105/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D D+ LQE ++ A
Sbjct: 1 MKLISWNVNGLRACVTKG---FMDYFNESDADIFCLQETKLQAG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ P Y +W+ A K Y+GTA+ K +P V + +E+ +
Sbjct: 42 ------------QIELPLEGRYSQYWNYAVKKGYSGTAVFTK--VEPLTVRYGIEEDS-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
E +GR++ EF+ FYL+N Y PN K + + R +W+ R + ++L+ KP+I C
Sbjct: 86 -EDEGRILTLEFDRFYLVNVYTPNA--KRDLSRLGYRLEWEDRFRAYLLELDAQKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ + K + G GFT ER + +L+ I
Sbjct: 143 GDLNVAHQEIDLKNA---------------KSNHGNSGFTTEERGKMTDLLESGFI 183
>gi|52141752|ref|YP_085078.1| exodeoxyribonuclease III [Bacillus cereus E33L]
gi|51975221|gb|AAU16771.1| exodeoxyribonuclease III [Bacillus cereus E33L]
Length = 252
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 111/236 (47%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F ++ + D+ LQE+++ QE + D
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 NV-----------------EDYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFEGFYIITLYTPNA--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEGFI 184
>gi|308233639|ref|ZP_07664376.1| exodeoxyribonuclease III Xth [Atopobium vaginae DSM 15829]
gi|328944401|ref|ZP_08241863.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
gi|327490985|gb|EGF22762.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
Length = 259
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 106/236 (44%), Gaps = 53/236 (22%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQE 96
S+K P +FV+WN N L +K P F +T + D+ A+QE ++ A G D
Sbjct: 2 SQKHPYRFVSWNVNGLRATLKKE-PSFLEIFSTLNADIFAIQETKLQA-GQVDLD----- 54
Query: 97 LKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE 155
Y WS A+ K Y+GTA+ ++ +P ++
Sbjct: 55 -----------------------LDGYTQTWSYAERKGYSGTAVFSRE--KPLSTIHTIG 89
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 214
A E GRV EFE F+ ++ Y PN+ K E R +WDK +EF++ K
Sbjct: 90 CKAADNE--GRVCALEFEKFWFVDVYTPNS--KNELARLDERMEWDKAYREFLVGLDAQK 145
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
P+I CGD NV+H+EID+ +P N E+ GF+ ER F ++L
Sbjct: 146 PVITCGDFNVAHQEIDLKNP------------ASNHEN---AGFSDEERAGFSSLL 186
>gi|260663817|ref|ZP_05864702.1| exodeoxyribonuclease III [Lactobacillus fermentum 28-3-CHN]
gi|260551578|gb|EEX24765.1| exodeoxyribonuclease III [Lactobacillus fermentum 28-3-CHN]
Length = 279
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++F++WN +S+ + I PDVIA+QE ++ +G K HQ
Sbjct: 1 MRFISWNIDSINAALTGTSARAEETRAVLEKIKAAAPDVIAIQETKLSKSGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ + F Y + W A YAGT L K+ PK V+
Sbjct: 58 ------------------GVLAELFAGYTVVWRSSVEPARKGYAGTMYLYKESLTPK-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ FYL Y PN+G + R++WD R +E++ +
Sbjct: 99 YPTIGAPEPMDEEGRIITLEFKNFYLTEVYTPNSGTGLKR--LAERQEWDDRYREYLTEL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+HEEID++HP + GFT ER++F A+L
Sbjct: 157 DRQKPVIASGDFNVAHEEIDLAHP---------------ANNHHSAGFTDEEREKFTALL 201
>gi|304384068|ref|ZP_07366522.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
gi|304334784|gb|EFM01060.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
Length = 250
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 106/233 (45%), Gaps = 55/233 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L V + F D D LQE +M
Sbjct: 1 MKFVSWNVNGLRACVGKS---FEESFRMLDADFFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F+ Y+ +W+ A+ K Y+GTA+ + QP+ VS+ + A
Sbjct: 39 ---QEGQLNLQ-------FEGYEAYWNYAEKKGYSGTAIYTRH--QPQSVSYGMGVEAHD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
+E GR+I E FYL+ Y PN+ ++ R +W++ +++ + K P+I C
Sbjct: 87 HE--GRIITLEMPGFYLVTVYTPNS--QDGLKRLAYRMQWEEDFLQYIKKLDAKKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
GD+NV+HEEID+ +P K + GFT ER +F +L E
Sbjct: 143 GDMNVAHEEIDIKNP---------------KTNRHNAGFTDEERNKFTTLLSE 180
>gi|335356439|ref|ZP_08548309.1| exodeoxyribonuclease [Lactobacillus animalis KCTC 3501]
Length = 253
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 108/230 (46%), Gaps = 53/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L +K N+ E T D D LQE ++ AG D
Sbjct: 1 MKFISWNVNGLRAVLKKNFLE---VFTDLDADFFCLQETKLQ-AGQVD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P + YQ W Y+GTA+ KK +P V+ L ++
Sbjct: 45 -------------LDLPDY--YQYWNYAQKKGYSGTAIFTKK--KPLAVTKGLGLA--EF 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCG 220
+ +GRV+ E+E FYL+N Y PN+ K + F R +W+ + + + KP+I CG
Sbjct: 86 DQEGRVLTLEYEDFYLVNCYTPNSQDKLKRLDF--RLQWEAAFSDHLTNLATKKPVILCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+H EID+ +P+ PN+++ GF+I ER+ A+L
Sbjct: 144 DLNVAHNEIDLKNPK------------PNQKN---AGFSIQERQAMTALL 178
>gi|432328166|ref|YP_007246310.1| exodeoxyribonuclease III [Aciduliprofundum sp. MAR08-339]
gi|432134875|gb|AGB04144.1| exodeoxyribonuclease III [Aciduliprofundum sp. MAR08-339]
Length = 257
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 104/196 (53%), Gaps = 37/196 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
L ++WN N + V+N F F+ ++PD++ALQE++ A D P
Sbjct: 5 LLLMSWNVNGIRAAVRNG---FLKFLEKYNPDILALQEIK---AREDDIP---------- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L ++ Y+ +++ A K YAGTAL K +P+ VSF + +
Sbjct: 49 -------------LEVRYYEGYRKFFNPARRKGYAGTALFTK--IEPESVSFGIGDE--R 91
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI AE+E FYL+N Y PN+ + + ++D++I ++ + KP++ C
Sbjct: 92 FDSEGRVITAEYERFYLVNAYFPNS--QHGLTRLDFKIEFDRKIHAYLNELRRSKPVVLC 149
Query: 220 GDLNVSHEEIDVSHPE 235
GD NV+H+EID+++P+
Sbjct: 150 GDFNVAHKEIDLANPK 165
>gi|75759849|ref|ZP_00739924.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228902244|ref|ZP_04066404.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|228966664|ref|ZP_04127710.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|402558959|ref|YP_006601683.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|423359274|ref|ZP_17336777.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|423561854|ref|ZP_17538130.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|434376797|ref|YP_006611441.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
gi|74492665|gb|EAO55806.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228793040|gb|EEM40596.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228857359|gb|EEN01859.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|401085146|gb|EJP93392.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|401202111|gb|EJR08976.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|401787611|gb|AFQ13650.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|401875354|gb|AFQ27521.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
Length = 252
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + G D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQS-GQIDLN---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ LE +
Sbjct: 48 ------------------LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGLEIE--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEGFI 184
>gi|398816273|ref|ZP_10574926.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
gi|398032975|gb|EJL26295.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
Length = 254
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 108/231 (46%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ + D+ LQE ++ QE + +
Sbjct: 2 MKLISWNVNGLRACVNKG---FYDYFKEANADIFCLQETKL------------QEGQIEM 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ E Y +W+ A+ K Y+GTA+ + +P V + LE+
Sbjct: 47 EIGEE----------------YHQYWNYAEKKGYSGTAVFTR--MEPLSVRYGLEE---D 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+EP+GRVI EF+ FYL+ Y PN K + + R +W+ R + ++LQ KP++ C
Sbjct: 86 HEPEGRVITLEFQDFYLVTVYTPNA--KRDLSRLDYRLEWEDRFRNYLLQLDAKKPVVVC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ + K + GFT ER++ ++L
Sbjct: 144 GDLNVAHQEIDLKNA---------------KSNRNNSGFTPEEREKMTSLL 179
>gi|254166764|ref|ZP_04873618.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289596498|ref|YP_003483194.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197624374|gb|EDY36935.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289534285|gb|ADD08632.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 39/211 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
L ++WN N + V+N F +F+ + PD++ALQE+
Sbjct: 3 LLLISWNVNGIRACVRNG---FLDFLEKYKPDILALQEI--------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA+ + I +R + +Y +W+ A K YAGTAL K +P + F + + K
Sbjct: 39 KATEDNIPIEVRY-----YPDYHKYWNPAKKKGYAGTALFTK--IEPLNIKFGIGED--K 89
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI AE+E FYL+N Y PN+ + + ++DK I ++ + KP+I C
Sbjct: 90 FDSEGRVITAEYEKFYLVNAYFPNS--QHGLTRLDFKIEFDKLIHSYLNELRKKKPVILC 147
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNK 250
GD NV+H+EID+++P+ K G+ P +
Sbjct: 148 GDFNVAHKEIDLANPK--QNVKNAGFTPQER 176
>gi|427440664|ref|ZP_18924936.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
gi|425787371|dbj|GAC45724.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
Length = 256
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 110/232 (47%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN N L VK+ F + D D+ +QE ++ QE + D
Sbjct: 6 LKLISWNVNGLRAAVKHG---FLDVFNELDADMFCVQETKL------------QEGQID- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 50 -------------LDLPGYHQY---WNYAEKKGYSGTAIFTKR--EPVAVSYGL--GIPE 89
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+E F+L+ Y PN+ + E R WD + +V Q + KP+I+C
Sbjct: 90 FDQEGRVITLEYEEFFLVTCYTPNS--QPELRRLDYRMNWDDAFRAYVKQLADTKPVIFC 147
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+HEEID+ + ++ + GFT ER++F +L+
Sbjct: 148 GDLNVAHEEIDLKN---------------DRTNHHNAGFTDEERQKFTELLQ 184
>gi|254168985|ref|ZP_04875824.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197622091|gb|EDY34667.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 39/211 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
L ++WN N + V+N F +F+ + PD++ALQE++ A + P
Sbjct: 3 LLLISWNVNGIRACVRNG---FLDFLEKYKPDILALQEIK---ATEDNVP---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ + +Y +W+ A K YAGTAL K +P V F + + K
Sbjct: 47 -------------MEVRYYPDYHKYWNPAKKKGYAGTALFTK--IEPLNVKFGIGED--K 89
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI AE+E FYL+N Y PN+ + + ++DK I ++ + KP+I C
Sbjct: 90 FDSEGRVITAEYEKFYLVNAYFPNS--QHGLTRLDFKIEFDKLIHSYLNELRKKKPVILC 147
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNK 250
GD NV+H+EID+++P+ K G+ P +
Sbjct: 148 GDFNVAHKEIDLANPK--QNVKNAGFTPQER 176
>gi|381337000|ref|YP_005174775.1| exonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
J18]
gi|356644966|gb|AET30809.1| exonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
J18]
Length = 272
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 59/243 (24%)
Query: 42 LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKN 93
+KF++WN +S+ +R + W N I T PDV A+QE ++ + G +K
Sbjct: 1 MKFISWNIDSINAAVEHKSVRGEMTWSTL-NEIATIRPDVFAIQETKLKSTGLTKKQATA 59
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWW--SLADSKYAGTALLVKKCFQPKKVS 151
EL F Y ++ S A S Y+GT +L K +P +V
Sbjct: 60 IAEL----------------------FPEYHLYVNSSTARSGYSGTMVLSK--VEPIQVE 95
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
+ + +GR+I EF TF+L Y PN+G +S R R +WD + +E++
Sbjct: 96 YPTIGAPGPMDLEGRIITLEFPTFFLSTVYTPNSG-----SSLIRLPERGEWDDKYREYI 150
Query: 209 LQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
+ KP+I+ GD+NV+H+EID+ +P+ PN+ GFT ER++F
Sbjct: 151 KRLDATKPVIFSGDMNVAHQEIDLKNPK------------PNRH---SAGFTDQEREKFS 195
Query: 268 AIL 270
A+L
Sbjct: 196 ALL 198
>gi|326390442|ref|ZP_08212000.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392939538|ref|ZP_10305182.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
gi|325993560|gb|EGD51994.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392291288|gb|EIV99731.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
Length = 257
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 116/243 (47%), Gaps = 54/243 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L ++ F ++ + D+ +QE ++ HQ
Sbjct: 1 MKFVSWNVNGLRACLQKG---FMDYFKKVNADIFCIQETKLQP---------HQT----- 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L + Y +W+ A+ K Y+GTA+ K ++P V++ + +
Sbjct: 44 ------------GLEELNLEGYYAFWNFAEKKAYSGTAVFTK--YKPLSVNYGI--GIPQ 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI E+E FYL+NTY PN+ + R +W++ + ++L+ S KP+I C
Sbjct: 88 HDNEGRVITLEYEKFYLVNTYTPNS--QRGLTRLSYRMEWEEDFRNYLLKLDSVKPIILC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P +A + N GFT ER++ +L I F
Sbjct: 146 GDLNVAHKEIDIKNP---SANRRNA------------GFTDEEREKMTMLLNSGFIDTFR 190
Query: 278 CFY 280
FY
Sbjct: 191 YFY 193
>gi|967268|gb|AAC47024.1| class II apurinic/apyrimidinic(AP)-endonuclease [Dictyostelium
discoideum]
Length = 361
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 51/235 (21%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
+ +K ++WN + F+ + +PDV+ LQE ++ N +K
Sbjct: 103 NQMKIISWNVAGFKSVLSKG---FTECVEKENPDVLCLQETKI----------NPSNIKK 149
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
D K Y+ + AD K + GT +L KK +P ++F +
Sbjct: 150 DQMP-----------------KGYEYHFIEADQKGHHGTGVLTKK--KPNAITFGI--GI 188
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLI 217
K++ +GRVI E+ FY++NTY PN G + + R ++WD Q ++ + + KP+I
Sbjct: 189 AKHDNEGRVITLEYVQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPII 248
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
WCGDLNV+H EID+ +P+ NK+ GFTI ER F L++
Sbjct: 249 WCGDLNVAHTEIDLKNPK------------TNKK---SAGFTIEERTSFSNFLEK 288
>gi|270290148|ref|ZP_06196374.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|418069863|ref|ZP_12707140.1| exonuclease III [Pediococcus acidilactici MA18/5M]
gi|270281685|gb|EFA27517.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|357536394|gb|EHJ20425.1| exonuclease III [Pediococcus acidilactici MA18/5M]
Length = 251
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK+ F + D D+ +QE ++ QE + D
Sbjct: 1 MKLISWNVNGLRAAVKHG---FLDVFNELDADIFCVQETKL------------QEGQID- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 45 -------------LDLPGYHQY---WNYAEKKGYSGTAVFTKR--EPVAVSYGL--GIPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+E F+L+ Y PN+ + E R WD + +V Q + KP+I+C
Sbjct: 85 FDQEGRVITLEYEEFFLVTCYTPNS--QPELRRLDYRMNWDDAFRAYVKQLADTKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+HEEID+ + ++ + GFT ER++F +L+
Sbjct: 143 GDLNVAHEEIDLKN---------------DRTNHHNAGFTDEERQKFTELLQ 179
>gi|326202355|ref|ZP_08192224.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325987473|gb|EGD48300.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 253
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 109/235 (46%), Gaps = 55/235 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K V+WN N L + F +F D D+ +QE ++
Sbjct: 3 KLVSWNVNGLRSCIGKG---FWDFFKEVDADIFCVQETKL-------------------- 39
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E +L L + Y+ +W+ A K Y+GTA+ K K VS S ++
Sbjct: 40 --QEGQLEL-------EIEGYEHYWNYAVKKGYSGTAIFTK----IKPVSSSCGIGIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 220
+ +GRVI EFE F+L+N Y PN+ K E + R KW+ +E++ Q KP+I CG
Sbjct: 87 DNEGRVITLEFEEFFLVNVYTPNS--KRELERLEYRMKWEDDFREYLKQLEQTKPVIICG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
D+NV+H+EID+ +P NK GFT+ ER++F +L+ +
Sbjct: 145 DMNVAHQEIDLKNPR------------SNKR---SAGFTMEEREKFSQLLEHGFV 184
>gi|304385589|ref|ZP_07367933.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
gi|304328093|gb|EFL95315.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
Length = 251
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK+ F + D D+ +QE ++ QE + D
Sbjct: 1 MKLISWNVNGLRAAVKHG---FLDVFNELDADIFCVQETKL------------QEGQID- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 45 -------------LDLPGYHQY---WNYAEKKGYSGTAVFTKR--EPVAVSYGL--GIPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+E F+L+ Y PN+ + E R WD + +V Q + KP+I+C
Sbjct: 85 FDQEGRVITLEYEKFFLVTCYTPNS--QPELRRLDYRMNWDDAFRAYVKQLADTKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+HEEID+ + ++ + GFT ER++F +L+
Sbjct: 143 GDLNVAHEEIDLKN---------------DRTNHHNAGFTDEERQKFTELLQ 179
>gi|374308939|ref|YP_005055370.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
gi|291165919|gb|EFE27966.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
Length = 251
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VK F +F D D+ LQE ++ + EL+
Sbjct: 1 MKLISWNVNGIRACVKKG---FLDFFKETDADIFCLQETKLQ--------EGQIELE--- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 47 ------------------LEGYHQYWNYAERKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K E R W+ + ++L+ + KP+I C
Sbjct: 85 HDQEGRVITLEFDNFYMVTVYTPNS--KNELLRLDYRMVWEDEFRSYLLRLNETKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFTI ER + +L I F
Sbjct: 143 GDLNVAHQEIDLKNP---------------KTNQKNAGFTIEERTKMSTLLDSGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 FFY 190
>gi|89097572|ref|ZP_01170461.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
gi|89087868|gb|EAR66980.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
Length = 251
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 109/236 (46%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK F +F + D+ +QE ++ + EL D
Sbjct: 1 MKLVSWNVNGIRACVKKG---FLDFFMEENADIFCIQESKLQ--------EGQIELNLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A+ K Y+GTA+ K+ +P VS+ + +
Sbjct: 49 --------------------GYHQYWNYAEKKGYSGTAVFTKE--KPLYVSYGI--AGRE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
EP+GR + EFE FYLLN Y PN+ K + R +W+ I+E++L+ KP+I C
Sbjct: 85 TEPEGRSLTLEFENFYLLNVYTPNS--KRDLARLPYRLEWEDEIREYILELEQKKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H +ID+ + + + G GFT ER + ++L E +
Sbjct: 143 GDLNVAHLDIDLKNA---------------RSNRGNSGFTDEERGKMTSLLSEGFV 183
>gi|339521855|gb|AEJ84092.1| DNA-(apurinic or apyrimidinic site) lyase [Capra hircus]
Length = 318
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 129/276 (46%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK WN + +K + ++I
Sbjct: 34 EKEAVGEGAVLYEDPADQKTSPSG-----KSATLKICPWNVDGRRAWIKK---KGVDWIK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + + ++ LS P +Q W +
Sbjct: 86 EEAPDILCLQE---------------------TKCSENKLPVELQELSGLP---HQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+A ++ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAGYDAFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEE DV +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEESDVRNPK----------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 225 -GNKKN---AGFTPQERQGFGELLQAVPLTDSFRHL 256
>gi|218898840|ref|YP_002447251.1| exodeoxyribonuclease III [Bacillus cereus G9842]
gi|218542018|gb|ACK94412.1| exodeoxyribonuclease III [Bacillus cereus G9842]
Length = 252
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + G D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKVQS-GQIDLN---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ LE +
Sbjct: 48 ------------------LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGLEIE--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEGFI 184
>gi|212694611|ref|ZP_03302739.1| hypothetical protein BACDOR_04139 [Bacteroides dorei DSM 17855]
gi|237711123|ref|ZP_04541604.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|265750710|ref|ZP_06086773.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|345515228|ref|ZP_08794734.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|423228072|ref|ZP_17214478.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|423239233|ref|ZP_17220349.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
gi|423243335|ref|ZP_17224411.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|212663112|gb|EEB23686.1| exodeoxyribonuclease III [Bacteroides dorei DSM 17855]
gi|229434345|gb|EEO44422.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|229454967|gb|EEO60688.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|263237606|gb|EEZ23056.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|392637108|gb|EIY30983.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|392645342|gb|EIY39070.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|392647020|gb|EIY40726.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
Length = 252
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 108/232 (46%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LKF++WN N L F++ + D LQE +M QE + D
Sbjct: 2 LKFISWNVNGLRACYDKG---FADAFNRLEADFFCLQETKM------------QEGQLDV 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ F+ YQ +W+ A+ K Y+GTA+ K +P V++ L +
Sbjct: 47 Q-----------------FEGYQSYWNYAEKKGYSGTAIFSK--VKPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E E++YL+ Y PN+ +EE R KWD + ++ + KP+I C
Sbjct: 86 HDHEGRVITLELESYYLITVYTPNS--QEELRRLDYRMKWDDDFRAYLKKLEEKKPVIVC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+H+EID+ +P K + GFT ER +F +L+
Sbjct: 144 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKFTTLLE 180
>gi|383810829|ref|ZP_09966315.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 306 str. F0472]
gi|383356543|gb|EID34041.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 306 str. F0472]
Length = 249
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 110/236 (46%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +F F+ D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVG---KDFEQQFKDFNADFFCLQETKM-QAGQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
LS P +++Y W+ AD K Y+GTA+ K +P V++ + +
Sbjct: 45 -------------LSFPGYESY---WNYADKKGYSGTAIFTKH--KPLSVTYGI--NIDE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E + FYL+ Y PN+ ++E + R KW++ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEMDDFYLVTVYTPNS--QDELRRLEYRMKWEEDFQSYLHKLDETKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+H+EID+ +P K + GFT ER++ +L I
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTELLNNGFI 183
>gi|327278208|ref|XP_003223854.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Anolis carolinensis]
Length = 314
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 121/246 (49%), Gaps = 52/246 (21%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
+ N KK LK +WN + + VK E+ ++ +PD++ LQE
Sbjct: 50 TSSNGKKYTLKVTSWNVDGIRAWVKKKGVEW---VSEENPDILCLQE------------- 93
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKV 150
TK + ++ +R L+ P K +W+ ++ K Y+G ALL K +P +V
Sbjct: 94 --------TKCAEKQLPADIRDLAEYPHK----YWACSEDKEGYSGVALLSK--VKPLEV 139
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
+ + + +++ +GRVI AEF +++L+ +Y PN G + R+ WD + ++
Sbjct: 140 KYGIGEE--EHDKEGRVITAEFPSYFLVTSYVPNAG--RGLVRLEYRQSWDVAFRSYLKG 195
Query: 211 CSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
+ KPLI CGDLNV+HEEID+ +P+ NK++ GFT ER F +
Sbjct: 196 LAARKPLILCGDLNVAHEEIDLKNPK------------GNKKN---AGFTPEERAGFTKL 240
Query: 270 LKEYLI 275
L+E +
Sbjct: 241 LEEGFV 246
>gi|242309877|ref|ZP_04809032.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
gi|239523878|gb|EEQ63744.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
Length = 256
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 108/232 (46%), Gaps = 57/232 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T D DV +QE +M
Sbjct: 5 MKLISWNVNGLRACMNKG---FMDFFNTIDADVFCIQESKM------------------- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ ++ F NY+ +W+ A+ K Y+G A+ KK K +S + +
Sbjct: 43 ----------QKEQATFDFPNYEEYWNSAEKKGYSGVAIFSKK----KPLSVAYDMGISH 88
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIW 218
++ +GR+I AE+ F+L+N Y PN+ K E + R +W+ + F+ L+ + KP+I
Sbjct: 89 HDKEGRIITAEYNDFFLVNVYTPNS--KRELERLEYRMEWEDDFRNFLKNLEVT-KPVIV 145
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
CGDLNV+H+EID+ +P K + GFT ER++ +L
Sbjct: 146 CGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEEREKMSVLL 182
>gi|299821801|ref|ZP_07053689.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
gi|299817466|gb|EFI84702.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
Length = 254
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 103/231 (44%), Gaps = 54/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++F++WN N L VK FS++ D D+ +QE ++ A
Sbjct: 1 MRFISWNVNGLRAAVKKG---FSDYFKEADADIFCVQETKLQAG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ + Y +W+ A K Y+GTA+ K+ +P V + L +
Sbjct: 42 ------------QIELEGLEGYHDYWNYAVKKGYSGTAVFTKE--EPLSVQYGLPEDV-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
+ +GRVI EF FY + Y PN+ + E R +W++ + ++ KP+++C
Sbjct: 86 HNQEGRVITLEFPAFYFVTVYTPNS--QAELKRLDYRTEWEQAFADHIIALDKQKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ +P K + PGF+ ER FG +L
Sbjct: 144 GDLNVAHQEIDLKNP---------------KTNRKNPGFSDQERAMFGQLL 179
>gi|403234513|ref|ZP_10913099.1| exodeoxyribonuclease III [Bacillus sp. 10403023]
Length = 251
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L VK F ++ D D+ +QE ++
Sbjct: 1 MKLVSWNVNGLRACVKKG---FLDYFHEMDADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L + Y +W+ A K Y+GTA+ KK +P VS+ +
Sbjct: 39 ---QEGQIEL-------DLEGYHQFWNYAIKKGYSGTAVFTKK--KPLSVSYGVADE--N 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
E +GR++ EFE FYL+N Y PN+ + + R W+ RI+E+++Q + KP++ C
Sbjct: 85 EEDEGRILTLEFEDFYLINVYTPNS--QRDLARLHFRLNWEDRIREYLIQLNKLKPIVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H +ID+ + K + G GFT ER + +L I F
Sbjct: 143 GDLNVAHSDIDLKNA---------------KSNRGNSGFTEEERGKMTDLLNSGFIDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|323344424|ref|ZP_08084649.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
gi|323094551|gb|EFZ37127.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
Length = 249
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V +F + D D LQE +M A G D
Sbjct: 1 MKLISWNVNGLRACVG---KDFETSFKSLDADFFCLQETKMQA-GQLDLA---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F YQ +W+ AD K Y+GTA+ K+ P V++ + +
Sbjct: 47 ------------------FNGYQSYWNYADKKGYSGTAIFTKQT--PLNVTYGMGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E E F+L+ Y PN+ ++E + R +W+ + ++L KP+I C
Sbjct: 85 HDHEGRVITLETENFFLVTVYTPNS--QDELRRLEYRMRWEDDFKAYLLALDARKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GD+NV+HEEID+ +P K + GFT ER++ +L
Sbjct: 143 GDMNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTELL 178
>gi|402836561|ref|ZP_10885097.1| exodeoxyribonuclease III [Mogibacterium sp. CM50]
gi|402271037|gb|EJU20293.1| exodeoxyribonuclease III [Mogibacterium sp. CM50]
Length = 249
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 106/231 (45%), Gaps = 56/231 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N +K F + D D LQE +M + P+ + E
Sbjct: 1 MKFISWNVNGFRAVLKKG---FEDVFKDLDADFFCLQETKMQEGQADFHPEGYHE----- 52
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++S AD K Y+GTA+ K+ P +V++ +E K
Sbjct: 53 ------------------------YYSYADKKGYSGTAIFAKEA--PLRVAYGIEG---K 83
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+ +GRVI E++ FYL+ Y PN+ ++E R +++ ++ ++ + KP+++C
Sbjct: 84 HNDEGRVITLEYDDFYLICAYVPNS--QDELKRIDYRMEYEDDLRAYMSKLDKVKPVVYC 141
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+HEEID+ +P K + G GF+ ER + +L
Sbjct: 142 GDLNVAHEEIDLKNP---------------KSNRGNAGFSDEERSKMTELL 177
>gi|327278210|ref|XP_003223855.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Anolis carolinensis]
Length = 306
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 121/246 (49%), Gaps = 52/246 (21%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
+ N KK LK +WN + + VK E+ ++ +PD++ LQE
Sbjct: 42 TSSNGKKYTLKVTSWNVDGIRAWVKKKGVEW---VSEENPDILCLQE------------- 85
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKV 150
TK + ++ +R L+ P K +W+ ++ K Y+G ALL K +P +V
Sbjct: 86 --------TKCAEKQLPADIRDLAEYPHK----YWACSEDKEGYSGVALLSK--VKPLEV 131
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
+ + + +++ +GRVI AEF +++L+ +Y PN G + R+ WD + ++
Sbjct: 132 KYGIGEE--EHDKEGRVITAEFPSYFLVTSYVPNAG--RGLVRLEYRQSWDVAFRSYLKG 187
Query: 211 CSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
+ KPLI CGDLNV+HEEID+ +P+ NK++ GFT ER F +
Sbjct: 188 LAARKPLILCGDLNVAHEEIDLKNPK------------GNKKN---AGFTPEERAGFTKL 232
Query: 270 LKEYLI 275
L+E +
Sbjct: 233 LEEGFV 238
>gi|302345223|ref|YP_003813576.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
gi|302150206|gb|ADK96468.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
Length = 249
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 108/236 (45%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V EF D D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVG---KEFEQQFKDLDADFFCLQETKM-QAGQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
LS P +++Y W+ AD K Y+GTA+ K +P V++ ++ +
Sbjct: 45 -------------LSFPGYESY---WNYADKKGYSGTAIYTKH--KPLSVTYGIDID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E E FYL+ Y PN+ ++ + R KW+ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEMEDFYLVTVYTPNS--QDGLRRLEYRMKWEDDFQAYLHKLDEKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+H+EID+ +P K + GFT ER++ +L I
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNHKNAGFTDEEREKMTQLLSNGFI 183
>gi|182413315|ref|YP_001818381.1| exodeoxyribonuclease III Xth [Opitutus terrae PB90-1]
gi|177840529|gb|ACB74781.1| exodeoxyribonuclease III Xth [Opitutus terrae PB90-1]
Length = 253
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 107/236 (45%), Gaps = 51/236 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + +K F +++ D DVI LQE +K P + Q
Sbjct: 1 MKLVSWNVNGVRAVLKKG---FLDYMGKVDADVICLQE-------TKAHPGDVQH----- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ A +P W+S Y+GTAL + P KV+F + +
Sbjct: 46 --------VAWTAGYTPH------WYSAVKKGYSGTALFTR--VAPLKVNFGIGLPG--H 87
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIWC 219
+ +GRVI AEF F+L+N Y PN+ + R +WD F+ L+ GKP+++C
Sbjct: 88 DDEGRVITAEFADFFLVNVYQPNSQRGLTRLKY-RTEEWDPAFLAFLKKLEKKGKPVVFC 146
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+++P K + GFT ER F +L +
Sbjct: 147 GDLNVAHQEIDLTNP---------------KTNRRNAGFTDEERANFSKLLASGFV 187
>gi|339448653|ref|ZP_08652209.1| exodeoxyribonuclease III Xth [Lactobacillus fructivorans KCTC 3543]
Length = 256
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 100/230 (43%), Gaps = 52/230 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+ F++WN N L VK N+ EF N I D D +QE R+
Sbjct: 1 MNFISWNVNGLRSAVKKNFYEFFNEI---DADFFNVQETRV------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
E + L P YQ W S YAG K + + V + ++ T
Sbjct: 39 ---HENDIAL-----EVPGNYYQYWDSAERPGYAGVTTFTKH--KAQNVIYGVDGTDTDV 88
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
E GR + E+ FYL+NTY PN+G EE R WD++ FV + +G KP+I G
Sbjct: 89 E--GRCLTLEYPDFYLINTYVPNSG--EELQRLDYRLDWDQKFITFVNKLTGTKPVIIGG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
D++V+++ ID+ PE ED + G+T ER FG +L
Sbjct: 145 DMSVAYQPIDIDDPE---------------EDHHKAGYTQQERDDFGRLL 179
>gi|164688495|ref|ZP_02212523.1| hypothetical protein CLOBAR_02140 [Clostridium bartlettii DSM
16795]
gi|164602908|gb|EDQ96373.1| exodeoxyribonuclease III [Clostridium bartlettii DSM 16795]
Length = 252
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 57/237 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N + V F +F D D+ LQE ++ + D P HQ
Sbjct: 1 MKFISWNVNGIRACVTKG---FLDFFNEVDADIFCLQETKLQEGQIELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K+ +P V++ ++
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFTKQ--EPISVNYGIQIE-- 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+++ +GRVI EF+ FY + Y PN+ + E R KW+ ++++L+ S K +I
Sbjct: 84 EHDKEGRVITLEFDNFYFVTVYTPNS--QSELKRLDYRMKWEDDFRKYLLKLNSKKGVIV 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
CGDLNV+H+EID+ +P K + GFT ER++F +L+ I
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDQEREKFTELLESGFI 183
>gi|150399093|ref|YP_001322860.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
gi|150011796|gb|ABR54248.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
Length = 257
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +KN F +F+ + +P++I +QE ++ + + E
Sbjct: 9 MKMISWNVNGIRACLKNG---FMDFLNSKNPEIICIQETKVQKGQVQLGLNGYFE----- 60
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+W+ A+ K Y+GTA+ K +PK V + + T K
Sbjct: 61 ------------------------YWNYAEKKGYSGTAIFTK--IEPKSVKYGI--TNYK 92
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
+ +GRVI EFE ++L+N Y PN+ + + R+KWDK + KP+I+C
Sbjct: 93 SDKEGRVITLEFEEYFLVNVYTPNS--QRGLKRLECRQKWDKDFLNHLKTLEQKKPVIFC 150
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ +P K++ GFT ER F ++
Sbjct: 151 GDLNVAHKEIDLKNP---------------KQNIKNAGFTKEERNGFDNLI 186
>gi|237753149|ref|ZP_04583629.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
gi|229375416|gb|EEO25507.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
Length = 250
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 106/231 (45%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L + + EF N + + DV +QE +M
Sbjct: 1 MRLISWNVNGLRACMNKGFMEFFN---SVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
R + F NY+ +W+ A+ K Y+G A+ K +P V + +
Sbjct: 39 ----------QREQAEFDFPNYEEYWNSAEKKGYSGVAIFSK--IKPLSVEYDM--GIAH 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR+I AEF FYL+N Y PN+ K E + R +W+ + F+ S KP+I C
Sbjct: 85 HDKEGRIITAEFSDFYLVNVYTPNS--KRELERLEYRMEWEDDFRTFLKNLESKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ +P K + GFT ER++ A+L
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEEREKMSALL 178
>gi|336114106|ref|YP_004568873.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
gi|335367536|gb|AEH53487.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
Length = 251
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L VK F F D+ +QE ++
Sbjct: 1 MKFVSWNVNGLRACVKKG---FLAFFAETGADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L Y +W+ A+ K Y+GTA+ KK +P V + + + +
Sbjct: 39 ---QEGQIAL-------DLDGYYQYWNYAERKGYSGTAVFTKK--EPLSVRYGVGEN--R 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
EP+GR++ E+E FYL+N Y PN+ + + R +W+ R++ ++ KP+I C
Sbjct: 85 TEPEGRILTLEYEDFYLVNVYTPNS--QRDLARLGYRLEWENRMRAYLTDLDKKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GD+NV+H+EID+ + K + G GFT ER + +L I F
Sbjct: 143 GDMNVAHQEIDLKNA---------------KSNIGNSGFTAEERDKMTGLLNSGFIDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|229174398|ref|ZP_04301930.1| Exodeoxyribonuclease [Bacillus cereus MM3]
gi|228608958|gb|EEK66248.1| Exodeoxyribonuclease [Bacillus cereus MM3]
Length = 252
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 107/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNVDIFCLQEIKLQDGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ Q KP+++C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKQLDEKKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEGFI 184
>gi|281422472|ref|ZP_06253471.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
gi|281403455|gb|EFB34135.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
Length = 250
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 107/233 (45%), Gaps = 55/233 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +F N D D LQE +M
Sbjct: 1 MKFISWNVNGLRACVG---KDFENQFKELDADFFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F+ Y+ +W+ A+ K Y+GTA+ K +P VS+ + +
Sbjct: 39 ---QEGQLDLQ-------FEGYESYWNYAEKKGYSGTAIYTKH--KPLNVSYGM--GVEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GR+I E++ FYL+ Y PN+ + E R W+ ++F+ K P+I C
Sbjct: 85 HDHEGRIITLEYDQFYLVTCYTPNS--QTELKRLDYRMTWEDDFRKFLKSLDAKKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
GDLNV+HEEID+ +P K + GFT ER++ +L +
Sbjct: 143 GDLNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTVLLND 180
>gi|312870577|ref|ZP_07730692.1| exodeoxyribonuclease III [Lactobacillus oris PB013-T2-3]
gi|417885012|ref|ZP_12529173.1| exodeoxyribonuclease III [Lactobacillus oris F0423]
gi|311093892|gb|EFQ52221.1| exodeoxyribonuclease III [Lactobacillus oris PB013-T2-3]
gi|341596968|gb|EGS39554.1| exodeoxyribonuclease III [Lactobacillus oris F0423]
Length = 275
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 107/244 (43%), Gaps = 58/244 (23%)
Query: 42 LKFVTWNANSL---LLRVKNNWPEFSNF---ITTFDPDVIALQEVRMPAAGSKDAP-KNH 94
+KF++WN +S+ L E I+ +PD +A+QE ++ SK+ P K H
Sbjct: 1 MKFISWNIDSINAALTGTSTRAGETRAVLKKISALEPDAVAIQETKL----SKNGPTKKH 56
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 150
++ D F YQI W A YAGT L + +QP V
Sbjct: 57 LQVLADL------------------FPGYQIAWRSSVEPARKGYAGTMYLYRDQYQPT-V 97
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEF 207
++ + +GR+I EF F+L Y PN+G N +R R +WD +++
Sbjct: 98 TYPQIGAPEPMDSEGRIITLEFHDFFLTEVYTPNSG-----NGLKRLADREQWDDCYRDY 152
Query: 208 VLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
+ Q KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 153 LHQLDEQKPVIASGDFNVAHEEIDLAHP---------------ANNHHSAGFTDEERSHF 197
Query: 267 GAIL 270
G +L
Sbjct: 198 GQLL 201
>gi|326804146|ref|YP_004321964.1| exodeoxyribonuclease III [Aerococcus urinae ACS-120-V-Col10a]
gi|326650889|gb|AEA01072.1| exodeoxyribonuclease III [Aerococcus urinae ACS-120-V-Col10a]
Length = 281
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 111/244 (45%), Gaps = 54/244 (22%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL L +N + S I +DPD+IA+QE ++ A G K HQ
Sbjct: 1 MKFISWNIDSLNAALTSDSNRAQLSRQVLETIDQYDPDLIAIQETKLSAKG---PTKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSF 152
E + EE P + N W S A YAG +L KK +P +++
Sbjct: 58 E-------ALEEWF--------PDYNN--AWVSSVEPARKSYAGNMVLYKKSLEPI-ITY 99
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVL 209
+ +GR+I +F FY Y PN G N +R R+ WD++ +++
Sbjct: 100 PKIGAPEPMDSEGRIITLDFGAFYFTQVYTPNAG-----NGLKRLAERQVWDEKYAQYLS 154
Query: 210 QCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
Q KPLI GD NV+H+EID++HPE + GFT ER F
Sbjct: 155 QLDQEKPLIATGDFNVAHKEIDLAHPE---------------NNHKSAGFTDEERSGFTK 199
Query: 269 ILKE 272
+L +
Sbjct: 200 LLDQ 203
>gi|45361461|ref|NP_989307.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
gi|39794455|gb|AAH64266.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|51703687|gb|AAH80950.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|89267865|emb|CAJ83004.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
Length = 316
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 115/243 (47%), Gaps = 52/243 (21%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
+ ++ KK LK +WN + + +K + N++ DP ++ LQE++
Sbjct: 52 TSDDGKKYTLKISSWNVDGIRAWIKK---QGLNWVREEDPHIMCLQEIKC---------- 98
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKV 150
EKL+ P + + +W+ D K Y+G A+L K +P V
Sbjct: 99 -------------AEKLLPPEIKDMPEYPHK--YWACPDEKEGYSGVAMLCKD--KPLNV 141
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
++ + +++ +GRVI AEF++F+L+ Y PN+ R++WD + ++
Sbjct: 142 TYGI--GIEEHDKEGRVITAEFDSFFLIAAYVPNSS--RGLVRLDYRQRWDVDFRAYLKG 197
Query: 211 C-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
S KPLI CGDLNV+H+EID+ +P K + PGFT ER+ FG +
Sbjct: 198 LDSKKPLILCGDLNVAHQEIDLKNP---------------KTNKKTPGFTPQERQGFGEL 242
Query: 270 LKE 272
L E
Sbjct: 243 LAE 245
>gi|30021833|ref|NP_833464.1| exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|229129016|ref|ZP_04257989.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
gi|29897389|gb|AAP10665.1| Exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|228654253|gb|EEL10118.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
Length = 252
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 112/236 (47%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P+ N+E+ PGF+ ER++F IL+E I
Sbjct: 144 GDLNVAHKEIDLKNPK------------SNREN---PGFSDEEREKFSCILEEGFI 184
>gi|221194898|ref|ZP_03567954.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
gi|221184801|gb|EEE17192.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
Length = 281
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 115/256 (44%), Gaps = 42/256 (16%)
Query: 23 KKDGETTETSSEENSKKD-PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVR 81
K D ++TS N+ KF +WN N L +K + P F+ T D D+ ALQE +
Sbjct: 9 KSDTAVSQTSRSSNTADTKEYKFASWNVNGLRAVLKKD-PSFTEIFETIDADIFALQETK 67
Query: 82 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 141
+ QE + D L P + +Q W Y+GTA+
Sbjct: 68 L------------QEGQVD--------------LDIPSY--FQTWNYAERKGYSGTAVFS 99
Query: 142 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 201
++ +P +V + E GRV EF+ F+ ++ Y PN+ KE+ R WD
Sbjct: 100 RE--EPLQVIRQIGSPVADNE--GRVCALEFDRFWFVDVYTPNS--KEQLARLDERLVWD 153
Query: 202 KRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PG 257
+R ++F+ + S KPLI CGD NV+H EID+ +P + K G+ +E + + G
Sbjct: 154 ERYRDFIAELSAQKPLITCGDFNVAHTEIDLKNPS--SNHKNAGFSDEERESFTKLLDAG 211
Query: 258 FTIAERKRFGAILKEY 273
FT R R + Y
Sbjct: 212 FTDTFRYRHPDVTGAY 227
>gi|441499473|ref|ZP_20981659.1| Exodeoxyribonuclease III [Fulvivirga imtechensis AK7]
gi|441437006|gb|ELR70364.1| Exodeoxyribonuclease III [Fulvivirga imtechensis AK7]
Length = 258
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 34/192 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
L V+WN N L +K F + + DPD++ LQE T
Sbjct: 4 LSLVSWNVNGLRAIIKKG---FITSLKSLDPDILCLQE---------------------T 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
K E+ ++ L P +K Y + S Y+GTA+L KK +P +++ L ++
Sbjct: 40 KGQVEDIKTALQLL--PDYKAY-VNCSKLKKGYSGTAILSKK--EPLDITYDLGHE--EH 92
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI AEF+ F+L+N Y PN+G + N + R+ WD + KP++ CG
Sbjct: 93 DQEGRVITAEFDHFFLVNVYTPNSG--QGLNRLEYRQAWDVIFLNHLRSLEQRKPVVLCG 150
Query: 221 DLNVSHEEIDVS 232
DLNV+HEEID++
Sbjct: 151 DLNVAHEEIDIA 162
>gi|229111211|ref|ZP_04240765.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|229146311|ref|ZP_04274682.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|296504242|ref|YP_003665942.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|423585849|ref|ZP_17561936.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|423641177|ref|ZP_17616795.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|423649605|ref|ZP_17625175.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|423656600|ref|ZP_17631899.1| exodeoxyribonuclease [Bacillus cereus VD200]
gi|228636944|gb|EEK93403.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|228672205|gb|EEL27495.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|296325294|gb|ADH08222.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|401233195|gb|EJR39691.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|401280238|gb|EJR86160.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|401282885|gb|EJR88782.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|401290341|gb|EJR96035.1| exodeoxyribonuclease [Bacillus cereus VD200]
Length = 252
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 112/236 (47%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P+ N+E+ PGF+ ER++F IL+E I
Sbjct: 144 GDLNVAHKEIDLKNPK------------SNREN---PGFSDEEREKFSCILEEGFI 184
>gi|407473575|ref|YP_006787975.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
gi|407050083|gb|AFS78128.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
Length = 250
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 105/232 (45%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VK F ++ T D D+ LQE +
Sbjct: 1 MKLISWNVNGIRACVKKG---FLDYFTDIDADIFCLQETK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L + + Y+ +W+ A K Y+GTA+ K+ +P +V + L +
Sbjct: 38 ---------LQEGQINLELEGYEQYWNYAVKKGYSGTAIFTKQ--KPIEVKYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE FYL+N Y PN+ + E R KW+ +E++ KP+I C
Sbjct: 85 HDQEGRVITLEFEDFYLVNVYTPNS--QSELARLDYRMKWEDIFREYLKDLDNIKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+H+EID+ +P K + GFT ER + +L+
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERNKMTELLE 179
>gi|373465510|ref|ZP_09556970.1| exodeoxyribonuclease III [Lactobacillus kisonensis F0435]
gi|371760225|gb|EHO48917.1| exodeoxyribonuclease III [Lactobacillus kisonensis F0435]
Length = 256
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 101/233 (43%), Gaps = 55/233 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK +F D D +QE +M A
Sbjct: 5 MKFISWNVNGLRAVVK---KDFDKTFNDLDADFFCIQETKMQAG---------------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
AL+ P + Y ++ A+ K Y+GTA+ K P V + ++
Sbjct: 46 ----------QLALTLPGYHQY---FNYAERKGYSGTAIFTKHA--PLNVYYGIQSDEFD 90
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+E GR I E+ TFYL+ +Y PN+G K + F R WD Q+++ + KP+I C
Sbjct: 91 HE--GRAITLEYPTFYLVTSYVPNSGAKLKRLDF--RMGWDVAFQQYLANLNKEKPVILC 146
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
GDLNV+H+ ID+ +P+ + GFT ER F L +
Sbjct: 147 GDLNVAHKTIDLKNPQ---------------TNHHNAGFTDEERNSFSHFLDQ 184
>gi|328870805|gb|EGG19178.1| transcription factor IIIC-gamma subunit [Dictyostelium
fasciculatum]
Length = 1238
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 103/238 (43%), Gaps = 51/238 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN K F +++ PD++ LQE ++ A PK+
Sbjct: 115 IKIVSWNVAGFGACTKKG---FKDYLIKEQPDIVCLQETKIAVA---KVPKSE------- 161
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
P Y + + + GTALL K K +S + K+
Sbjct: 162 ---------------IPEGYTYHFNPCIEKTGHHGTALLTK----IKPISITSGIGISKH 202
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEE---NSFQRRRKWDKRIQEFVLQC-SGKPLI 217
+ +GRV+ AEFE FY++N Y PN+G +E R ++WD +++ + KP++
Sbjct: 203 DQEGRVVTAEFEDFYVVNAYVPNSGVDRKEPLKRLGYRTKEWDVDFFKYMSDLNTKKPVV 262
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
WCGDLNV+H EID+++P K + GFTI ER F L I
Sbjct: 263 WCGDLNVAHTEIDLANP---------------KSNSRTAGFTIEERTSFSGHLNSGFI 305
>gi|420154891|ref|ZP_14661764.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
gi|394760027|gb|EJF42663.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
Length = 252
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 100/230 (43%), Gaps = 53/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L + F +F D D+ LQE +M ++
Sbjct: 1 MKFVSWNVNGLRACLNKG---FLDFFREADADIFCLQETKMQEGQAE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P + Y W S Y+GTA+ KK +P V + + +
Sbjct: 45 -------------LDLPGYLQY--WNSAEKKGYSGTAVFTKK--EPLSVCYDIRHP--DH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+GR I EFE+FYL+N Y PN+ + E R +W+ +E+V Q KP+I CG
Sbjct: 86 TGEGRAITLEFESFYLVNVYTPNS--QRELVRLPYRMEWENAFREYVTQLDEKKPVIICG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+H+EID+ + K + G GF+ ER + +L
Sbjct: 144 DLNVAHQEIDLKNA---------------KSNIGNAGFSYEERGKLTELL 178
>gi|339443513|ref|YP_004709518.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
gi|338902914|dbj|BAK48416.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
Length = 289
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 55/239 (23%)
Query: 34 EENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
++N ++ +KF++WN N + V F ++ D D+ LQE ++
Sbjct: 32 QKNRRRIGMKFISWNVNGIRACVNKG---FLDYFHAADADIFCLQETKL----------- 77
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
+E +L L + Y +W+ A+ K Y+GTA+ K+ +P VS+
Sbjct: 78 -----------QEGQLAL-------DLEGYFQYWNYAEKKGYSGTAVFTKE--EPLSVSY 117
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
L A ++ +GRVI E+ETFY + Y PN+ + E R +W+ + ++
Sbjct: 118 GLGIEA--HDQEGRVITLEYETFYFVTVYTPNS--QSELKRLDYRMEWEDDFRAYLTGLD 173
Query: 213 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I CGD+NV+H+EID+ +P+ N+++ GFT ER++F +L
Sbjct: 174 REKPVIVCGDMNVAHQEIDLKNPK------------TNRKN---AGFTDEERQKFTELL 217
>gi|253574957|ref|ZP_04852296.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251845413|gb|EES73422.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 251
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 108/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V F ++ D D+ LQE ++ QE + +
Sbjct: 1 MKLVSWNVNGLRACVGKG---FLDYFKEADADIFCLQETKL------------QEGQIEL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
E Y+ +W+ A+ K Y+GTA+ + +P V + +E+
Sbjct: 46 DLGSE----------------YEQYWNYAEKKGYSGTAVFTR--IKPLSVRYGMEE---D 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
YEP+GR+I EFE FYL+ Y PN K + + R +W+ R + ++ KP+I C
Sbjct: 85 YEPEGRIITLEFEQFYLVTVYTPNA--KRDLSRLDYRMEWEDRFRTYLTGLDAVKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H ID+ + K + G G+T+ ER + +L I F
Sbjct: 143 GDLNVAHNPIDIKNA---------------KSNEGNSGYTLEERGKMTELLASGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 HFY 190
>gi|229197850|ref|ZP_04324566.1| Exodeoxyribonuclease [Bacillus cereus m1293]
gi|228585568|gb|EEK43670.1| Exodeoxyribonuclease [Bacillus cereus m1293]
Length = 252
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 111/236 (47%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F ++ + D+ LQE+++ QE + D
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ K+ +P V++ L +
Sbjct: 47 NV-----------------EGYYTYWNYAVKKGYSGTAIFSKE--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRVYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEGFI 184
>gi|417838439|ref|ZP_12484677.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
gi|338761982|gb|EGP13251.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
Length = 275
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 108/242 (44%), Gaps = 52/242 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ P N I D D+IA+QE ++ + G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSPRAQLTRSVLNTIKEKDADIIAIQETKLRSTG---PTKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADS----KYAGTALLVKKCFQPKKVS 151
E+ L M F NY W ++ YAGT L K P+
Sbjct: 58 EV-----------LAEM-------FPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTK 99
Query: 152 FSLEK-TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
++ + YE GR++ EF+ +Y+ Y PN+G E + R+ WD++ E++ +
Sbjct: 100 PAIGAPDTMDYE--GRILTLEFDNYYVTQVYTPNSG--NELKRLEDRQIWDEKYTEYLQK 155
Query: 211 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
GKP+I GD NV+H ID+ HPE + GFT ER+ F +
Sbjct: 156 LDKGKPVIASGDYNVAHTPIDLKHPE---------------NNHHNAGFTDEERQDFDKL 200
Query: 270 LK 271
LK
Sbjct: 201 LK 202
>gi|32266427|ref|NP_860459.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
gi|32262477|gb|AAP77525.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
Length = 252
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D+ +QE +M K+ + H
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFNEVNADIFCIQESKM----CKEQAQFH------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F+NY+ +W+ A+ K Y+G +L K QP V++ + T
Sbjct: 47 ------------------FENYKEYWNSAEKKGYSGVVILSKT--QPINVAYDMGITY-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR+I AE+ FYL+N Y PN+ K E R KW+ + FV + K +I C
Sbjct: 85 HDKEGRIITAEYPHFYLVNVYTPNS--KRELERLDYRMKWEDDFRAFVKNLENHKSVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER + A+L I F
Sbjct: 143 GDLNVAHQEIDLKNP---------------KTNRRNAGFTDEERNKMSALLDAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|429738347|ref|ZP_19272158.1| exodeoxyribonuclease III [Prevotella saccharolytica F0055]
gi|429160421|gb|EKY02885.1| exodeoxyribonuclease III [Prevotella saccharolytica F0055]
Length = 249
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 101/231 (43%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +F T + D LQE +M A
Sbjct: 1 MKFISWNVNGLRACVG---KDFEAQFKTLNADFFCLQETKMQAG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+L L F YQ +W+ AD + Y+GTA+ + P V++ + A
Sbjct: 42 ------QLYL-------QFDGYQSYWNYADKRGYSGTAIYTRHT--PLSVTYGIGVDAHD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+E GRVI E FYL+ Y PN+ ++E R W+ + F+L KP+I C
Sbjct: 87 HE--GRVITLEMNDFYLVTVYTPNS--QDELKRLDYRMTWEDDFKTFLLALDARKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GD+NV+H+EID+ +P K + GFT ER++ +L
Sbjct: 143 GDMNVAHQEIDIKNP---------------KTNRRNAGFTDEEREKMTVLL 178
>gi|384891873|ref|YP_005766006.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|385224548|ref|YP_005784474.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
gi|385232401|ref|YP_005792320.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|307638182|gb|ADN80632.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|325996778|gb|ADZ52183.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|325998370|gb|ADZ50578.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
Length = 250
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 114/244 (46%), Gaps = 59/244 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIW 218
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F VL+ KP+I
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEMEFKKFLKVLELK-KPVIV 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--F 276
CGDLNV+H EID+ +P K + GF+ ERK+F +L I F
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERKKFNELLNAGFIDTF 186
Query: 277 LCFY 280
FY
Sbjct: 187 RYFY 190
>gi|423635487|ref|ZP_17611140.1| exodeoxyribonuclease [Bacillus cereus VD156]
gi|401278238|gb|EJR84174.1| exodeoxyribonuclease [Bacillus cereus VD156]
Length = 252
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L+ +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLDIE--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEEGFI 184
>gi|357405967|ref|YP_004917891.1| exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
gi|351718632|emb|CCE24306.1| Exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
Length = 254
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 39/197 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + + F+ + D D I LQE T
Sbjct: 1 MKIISWNVNGIRAVMGKG---FAESLEKLDADCILLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL- 159
KA ++ + ++ S Y I+ + A K Y+G ALL K+ +P ++ L+ +
Sbjct: 37 KAQDDQVQTALESIDS-----YHIYSNSAGRKGYSGVALLTKQ--EPIQI---LQDIGID 86
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+++ +GRVI AEFE F LLN Y PN+G E+ R+ WDK + + Q S KPLI
Sbjct: 87 EHDQEGRVIAAEFENFILLNVYVPNSG--EKLVRLDYRKIWDKELLAYFQQLNSRKPLIA 144
Query: 219 CGDLNVSHEEIDVSHPE 235
CGD NV+H+EID++ P+
Sbjct: 145 CGDFNVAHQEIDIARPK 161
>gi|256846719|ref|ZP_05552175.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
gi|256717939|gb|EEU31496.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
Length = 253
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMTWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GFT ER +F +L I F
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|228922454|ref|ZP_04085756.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|423581952|ref|ZP_17558063.1| exodeoxyribonuclease [Bacillus cereus VD014]
gi|228837168|gb|EEM82507.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|401212831|gb|EJR19572.1| exodeoxyribonuclease [Bacillus cereus VD014]
Length = 252
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L+ +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLDIE--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEEGFI 184
>gi|237740967|ref|ZP_04571448.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294784430|ref|ZP_06749721.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
gi|229431011|gb|EEO41223.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294488002|gb|EFG35357.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
Length = 253
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLTVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMTWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GFT ER +F +L I F
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|294790372|ref|ZP_06755530.1| exodeoxyribonuclease III [Scardovia inopinata F0304]
gi|294458269|gb|EFG26622.1| exodeoxyribonuclease III [Scardovia inopinata F0304]
Length = 276
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 109/240 (45%), Gaps = 49/240 (20%)
Query: 42 LKFVTWNANSL---LLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNHQ 95
+KFV+WN +SL LL + + + + +P+VIA+QE ++PA G K H
Sbjct: 1 MKFVSWNIDSLNAALLGKSDRSVQSRQVLASIRGENPEVIAIQETKLPATGPS---KKH- 56
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ ALS F +Y + W A YAGT L KK V+
Sbjct: 57 ----------------LTALSQF-FDDYDVHWRSSVEPARKGYAGTMCLSKKGLPLVAVT 99
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+ EF FYL+N Y PN+G + R+ WD + ++ +
Sbjct: 100 EPRIHSPEPMDCEGRLQTLEFPDFYLVNVYTPNSG--DGLRRLSDRQLWDDAYRAYLTEL 157
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ CGD NV+H+EID++HP + GFT ER++F A+L
Sbjct: 158 DEAKPILACGDFNVAHQEIDLAHP---------------ASNHHSAGFTDEERQKFTALL 202
>gi|423616001|ref|ZP_17591835.1| exodeoxyribonuclease [Bacillus cereus VD115]
gi|401260538|gb|EJR66711.1| exodeoxyribonuclease [Bacillus cereus VD115]
Length = 252
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + G D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEASNADIFCLQEIKLQS-GQIDLN---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 48 ------------------LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ Q KP+I+C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKQLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEGFV 184
>gi|229098205|ref|ZP_04229152.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|423441531|ref|ZP_17418437.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|423464605|ref|ZP_17441373.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|423533947|ref|ZP_17510365.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
gi|228685103|gb|EEL39034.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|402418192|gb|EJV50492.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|402420872|gb|EJV53143.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|402464166|gb|EJV95866.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
Length = 252
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 109/236 (46%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ +KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFMKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ Q KP+++C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRTYIKQLDEKKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEGFV 184
>gi|315917146|ref|ZP_07913386.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
gi|313691021|gb|EFS27856.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
Length = 250
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 103/232 (44%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F + D D+ LQE + A EL
Sbjct: 1 MKLISWNVNGIRACLKKG---FMEYFEAQDADIFCLQETKCSAG--------QVEL---- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A K Y+GTA+ KK +P VS+ L +
Sbjct: 46 -----------------DLKGYHQYWNYAVKKGYSGTAIFTKK--EPISVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K E R W+ + ++ + + KP++ C
Sbjct: 85 HDQEGRVITLEFEDFYMVTVYTPNS--KNELERLDYRMVWEDEFRSYLAKLNEAKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GD+NV+HEEID+ +P K + GFT ER +F +LK
Sbjct: 143 GDMNVAHEEIDLKNP---------------KTNRRNAGFTDEERSKFTELLK 179
>gi|315303668|ref|ZP_07874193.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627958|gb|EFR96566.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
Length = 251
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ + + D D+ LQE ++ A G D
Sbjct: 1 MKLISWNVNGLRAVVKKGFLEYFD---SVDADIFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ KK +P V + L +
Sbjct: 45 -------------LDLPGYKDY---WNYAVKKGYSGTAIFTKK--EPLSVQYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I +V + KP+I C
Sbjct: 85 HDTEGRVITLEFENFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GF+ ER +F A L+ + F
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTAFLEAGFVDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|303237381|ref|ZP_07323951.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
gi|302482768|gb|EFL45793.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
Length = 250
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 93/195 (47%), Gaps = 40/195 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V + E I D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRACVTKGFKESFEAI---DADFFCLQETKMQA-GQLDIA---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y+ +W+ A+ K Y+GTA+ K QP V++ L +
Sbjct: 47 ------------------FDGYESYWNYAEKKGYSGTAIFTKH--QPLNVTYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E E FYL+ Y PN+ ++ + R +W+ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEMENFYLVTCYTPNS--QDGLKRLEYRMRWEDDFQTYIKRLDEKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHP 234
GDLNV+HEEID+ +P
Sbjct: 143 GDLNVAHEEIDLKNP 157
>gi|317056539|ref|YP_004105006.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
gi|315448808|gb|ADU22372.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
Length = 250
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 54/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N ++ F +F T D D+ +QE +M + +P+ +
Sbjct: 1 MKFISWNVNGFRACLQKG---FGDFFTAADADIFCIQETKMQPDQADFSPEGY------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ + S Y+GTA+ KK +P +V F L T +
Sbjct: 51 ---------------------LKYFHSAVKKGYSGTAVYTKK--EPLEVKFGLNGT---H 84
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+GRVI EFE +Y + Y PN + E R +++ ++ ++ Q KP+++CG
Sbjct: 85 TDEGRVITCEFEDYYFVCCYVPNA--QNELKRIDYRMEFEDDMRAYLSQLDKTKPVVYCG 142
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+HEEID+ +P K + G GF+ ER +F +L
Sbjct: 143 DLNVAHEEIDLKNP---------------KSNAGNAGFSDEERGKFTELL 177
>gi|257066091|ref|YP_003152347.1| exodeoxyribonuclease III Xth [Anaerococcus prevotii DSM 20548]
gi|256797971|gb|ACV28626.1| exodeoxyribonuclease III Xth [Anaerococcus prevotii DSM 20548]
Length = 274
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 107/251 (42%), Gaps = 72/251 (28%)
Query: 42 LKFVTWNANSL-----------------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPA 84
+KF++WN +SL LL +KN +PDVIALQE ++PA
Sbjct: 1 MKFISWNIDSLNAALTSDSKRAVMSRDVLLTIKNE-----------NPDVIALQETKLPA 49
Query: 85 AGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALL 140
G K H E KL S F +Y W A YAGT L
Sbjct: 50 NGPS---KKHVE-----------KL-------SEFFPDYDYVWISSRPGARKSYAGTMTL 88
Query: 141 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 200
KK K+ SF + +GR++ EFE FY Y PN G E R +W
Sbjct: 89 YKKGLDVKE-SFPEIGAPDTMDLEGRILTLEFEDFYFTQVYTPNAG--GELKRLPLREEW 145
Query: 201 DKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 259
DK +++ + KP+I GD NV+HEEID++HPE N ++ GFT
Sbjct: 146 DKLYADYLAELDKNKPVIATGDFNVAHEEIDLAHPE-------NNHM--------SAGFT 190
Query: 260 IAERKRFGAIL 270
ER+ F +L
Sbjct: 191 DEERRGFTNLL 201
>gi|30263740|ref|NP_846117.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47529159|ref|YP_020508.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49186585|ref|YP_029837.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|65321063|ref|ZP_00394022.1| COG0708: Exonuclease III [Bacillus anthracis str. A2012]
gi|118478961|ref|YP_896112.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|165872421|ref|ZP_02217056.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167639873|ref|ZP_02398142.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170706859|ref|ZP_02897317.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|177652038|ref|ZP_02934584.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190568466|ref|ZP_03021373.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|196034121|ref|ZP_03101531.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196038388|ref|ZP_03105697.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|196044665|ref|ZP_03111900.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|218904866|ref|YP_002452700.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225865717|ref|YP_002751095.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227813360|ref|YP_002813369.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228916370|ref|ZP_04079939.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228928786|ref|ZP_04091820.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935036|ref|ZP_04097866.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228947401|ref|ZP_04109692.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|229092775|ref|ZP_04223913.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|229123254|ref|ZP_04252458.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|229185967|ref|ZP_04313138.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|229603277|ref|YP_002867975.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|254721165|ref|ZP_05182956.1| exodeoxyribonuclease III [Bacillus anthracis str. A1055]
gi|254735775|ref|ZP_05193481.1| exodeoxyribonuclease III [Bacillus anthracis str. Western North
America USA6153]
gi|254751095|ref|ZP_05203134.1| exodeoxyribonuclease III [Bacillus anthracis str. Vollum]
gi|254759412|ref|ZP_05211437.1| exodeoxyribonuclease III [Bacillus anthracis str. Australia 94]
gi|376267630|ref|YP_005120342.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|386737557|ref|YP_006210738.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|421510574|ref|ZP_15957465.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
gi|30258384|gb|AAP27603.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47504307|gb|AAT32983.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49180512|gb|AAT55888.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|118418186|gb|ABK86605.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|164711859|gb|EDR17401.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167512274|gb|EDR87651.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170128277|gb|EDS97146.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|172082407|gb|EDT67472.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190560470|gb|EDV14448.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|195993195|gb|EDX57153.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196024700|gb|EDX63372.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|196030796|gb|EDX69394.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|218539943|gb|ACK92341.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225789176|gb|ACO29393.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227006454|gb|ACP16197.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228597519|gb|EEK55168.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|228660030|gb|EEL15666.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|228690573|gb|EEL44354.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|228812254|gb|EEM58584.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228824606|gb|EEM70408.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228830871|gb|EEM76474.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843280|gb|EEM88359.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229267685|gb|ACQ49322.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|364513430|gb|AEW56829.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|384387409|gb|AFH85070.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|401819394|gb|EJT18573.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
Length = 252
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F ++ + D+ LQE+++ QE + D
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 NV-----------------EGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K + R KW+ + ++ + K +++C
Sbjct: 86 HDQEGRVITLEFEDFYIITLYTPNS--KRGLERLEYRMKWEDDFRAYIKRLDEKKSVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEGFI 184
>gi|350268411|ref|YP_004879717.1| exodeoxyribonuclease [Oscillibacter valericigenes Sjm18-20]
gi|348593251|dbj|BAK97211.1| exodeoxyribonuclease [Oscillibacter valericigenes Sjm18-20]
Length = 250
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 57/232 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+K ++WN N L + F +F + D DVI LQE +M P D P
Sbjct: 1 MKLISWNVNGLRACIGKG---FLDFCKSADADVICLQETKMKPEQADFDLP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADS-KYAGTALLVKKCFQPKKVSFSLEKTAL 159
Y+ +W+ AD Y+GTA+ + P +++
Sbjct: 49 ---------------------GYEKFWNSADKPGYSGTAVFTR--VPPLNMTYDFGGDEY 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
++E GRVI AEFE FYL+ Y PN ++E R +W+ ++++ + KP++
Sbjct: 86 RHE--GRVITAEFEEFYLVCCYTPNA--QDELRRIDYRMRWEDDFRDYLRELDRVKPVVL 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
CGDLNV+HEEID+ +P K + G GF+ ER + +L
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNRGHAGFSDQERGKMTELL 178
>gi|302876908|ref|YP_003845541.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|307687596|ref|ZP_07630042.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|302579765|gb|ADL53777.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
Length = 253
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F +F + D D+ LQE +
Sbjct: 1 MKLISWNVNGIRACVEKG---FLDFFKSVDADIFCLQETK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L + + Y+ +W+ A+ K Y+GTA+ K+ +P S+ L +
Sbjct: 38 ---------LQQGQIDLDLEGYEQYWNYAEKKGYSGTAVFTKE--KPLSASYGL--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E++ FYL+ Y PN+ KEE + R +W+ + ++ + KP+I C
Sbjct: 85 HDKEGRVITLEYDDFYLVTVYTPNS--KEELARLEYRMEWEDAFRAYLKKLEKNKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER +F +L I
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNPGFSDEERAKFSELLASGFI 183
>gi|317058758|ref|ZP_07923243.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
gi|313684434|gb|EFS21269.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
Length = 250
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 103/232 (44%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F + D D+ LQE + A EL
Sbjct: 1 MKLISWNVNGIRACLKKG---FMEYFEAQDADIFCLQETKCSAG--------QVEL---- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A K Y+GTA+ KK +P VS+ L +
Sbjct: 46 -----------------DLKGYHQYWNYAVKKGYSGTAIFTKK--EPISVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K E R W+ + ++ + + KP++ C
Sbjct: 85 HDQEGRVITLEFEDFYMVTVYTPNS--KNELERLDYRMIWEDEFRSYLAKLNEAKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GD+NV+HEEID+ +P K + GFT ER +F +LK
Sbjct: 143 GDMNVAHEEIDLKNP---------------KTNRRNAGFTDEERTKFTELLK 179
>gi|313892072|ref|ZP_07825670.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
gi|313119524|gb|EFR42718.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
Length = 254
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 107/231 (46%), Gaps = 53/231 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK+++WN N L +K F + + D LQE ++ HQ
Sbjct: 4 LKYISWNVNGLRACIKKG---FLDSFKNLNADCFCLQETKLQP---------HQ------ 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
L+ P + YQ W S Y+GTAL K +P VS+ + ++
Sbjct: 46 -----------IELNIPGY--YQYWNSAIKKGYSGTALFTK--IKPISVSYGM--NIEEH 88
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GR+I AEFE +L+ Y PN+ + + + R KW+ + ++L+ + KP+I CG
Sbjct: 89 DQEGRLITAEFENHFLVVCYTPNS--QRQLARLEYRMKWENDFKNYLLKLTESKPVILCG 146
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
DLNV+H+EID+++P + GFT ERK+F +L+
Sbjct: 147 DLNVAHKEIDLANPS---------------SNHKNAGFTDDERKKFSTLLE 182
>gi|423082270|ref|ZP_17070862.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
gi|423087662|ref|ZP_17076048.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357543976|gb|EHJ25982.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357548596|gb|EHJ30456.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
Length = 250
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 106/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V F +F D DV LQE ++ +
Sbjct: 1 MKFISWNVNGIRACVGKG---FLDFFKEVDADVFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ KK +P KV + + +
Sbjct: 45 -------------LDLPGYFQY---WNYAERKGYSGTAIFTKK--EPLKVMYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE FY + Y PN+ + E + R +W+ +++ + KP+I C
Sbjct: 85 HDKEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+H+EID+ +P K + GFT ER++F +L I
Sbjct: 143 GDMNVAHKEIDLKNP---------------KNNMKNAGFTKEEREKFSKLLDSGFI 183
>gi|420236813|ref|ZP_14741290.1| exodeoxyribonuclease [Parascardovia denticolens IPLA 20019]
gi|391879916|gb|EIT88416.1| exodeoxyribonuclease [Parascardovia denticolens IPLA 20019]
Length = 277
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 106/242 (43%), Gaps = 52/242 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF-------ITTFDPDVIALQEVRMPAAGSKDAPKNH 94
+KFVTWN +SL + + E S I P V A+QE ++PAAG P
Sbjct: 1 MKFVTWNIDSLNAALTGD-SERSRLSRQVLHDIAACSPQVFAIQETKLPAAG----PSKK 55
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVK-KCFQPKK 149
Q KAS E F Y+I W A YAGT L + + Q
Sbjct: 56 Q------KASLESI-----------FPGYRIAWRSSQEPARKGYAGTMCLYRPEGGQEVS 98
Query: 150 VSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 209
+ + +GR++ EF FYL + Y PN+G + + R+ WD R + ++
Sbjct: 99 PLYPQIGAPEPMDSEGRILTLEFPGFYLTDVYTPNSG--DGLRRLEERQVWDDRYRSYLQ 156
Query: 210 QCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
KP+I CGD NV+HEEID++HP N+ GFT ER +FG
Sbjct: 157 DLDQVKPVIACGDFNVAHEEIDLAHPA------------SNRR---SAGFTDEERDKFGQ 201
Query: 269 IL 270
+L
Sbjct: 202 LL 203
>gi|34763743|ref|ZP_00144662.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27886479|gb|EAA23735.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 253
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMTWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GFT ER +F +L + F
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSGFVDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|429741842|ref|ZP_19275492.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
gi|429158090|gb|EKY00657.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
Length = 250
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L +PE I D D + LQE +M A +L+ D
Sbjct: 1 MKFISWNVNGLRAVFGKGFPEI---IQGLDADFVCLQETKMQAG----------QLEAD- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+Y +W+ A+ K Y+GTA+ + +P VS+ +
Sbjct: 47 ------------------LPSYHTYWNYAEKKGYSGTAIYTRH--EPLSVSYGIGID--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E+ FYL+ Y PN+ +++ R W+ + ++++ K P+I C
Sbjct: 85 HDTEGRVITLEYTDFYLVTVYVPNS--QDDLRRLGYRMTWEDDFRAYLVELDKKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + GFT ER +F +L I
Sbjct: 143 GDLNVAHQEIDLKNP---------------KSNRRNAGFTDEERGKFQELLDAGFI 183
>gi|20808602|ref|NP_623773.1| exonuclease III [Thermoanaerobacter tengcongensis MB4]
gi|20517232|gb|AAM25377.1| Exonuclease III [Thermoanaerobacter tengcongensis MB4]
Length = 258
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 54/243 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L ++ F ++ D D+ +QE ++ QE + D
Sbjct: 1 MKLVSWNVNGLRACLQKG---FMDYFKAIDADIFCIQETKL------------QENQKD- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ K ++P VS+ +
Sbjct: 45 -------------IEGLDLNGYYAFWNFAEKKGYSGTAVFTK--YKPLSVSYGIGTP--H 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI E++ F+L+N Y PN+ + R +W++ + ++L+ S KP+I C
Sbjct: 88 HDKEGRVITLEYKKFFLVNAYTPNS--QRGLTRLNYRMEWEEDFRSYLLKLDSVKPVILC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P AA + N GFT ER++ +L I F
Sbjct: 146 GDLNVAHQEIDIKNP---AANRRNA------------GFTDEEREKMTILLNSGFIDTFR 190
Query: 278 CFY 280
FY
Sbjct: 191 YFY 193
>gi|374604001|ref|ZP_09676972.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
gi|374390357|gb|EHQ61708.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
Length = 264
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 108/231 (46%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D D+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVNKG---FIDYFKASDADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E I + S Y+ +W+ A+ K Y+GTA+ + +P V + +E+
Sbjct: 39 ----QEGQICLELGES-----YRQYWNYAEKKGYSGTAVFTR--IEPLSVRYGMEEDR-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
EP+GR+I EFE+FYL+ Y PN K + + + R +W++R + ++ + KP+I C
Sbjct: 86 -EPEGRMITLEFESFYLVTVYTPNA--KRDLSRLEYRLEWEERFRRYLQELDARKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+E+D+ + K + G GFT ER + +L
Sbjct: 143 GDLNVAHQEMDLKNA---------------KSNHGNSGFTPEERDKMTRLL 178
>gi|414597004|ref|ZP_11446575.1| Exodeoxyribonuclease III [Leuconostoc citreum LBAE E16]
gi|421876607|ref|ZP_16308163.1| Exodeoxyribonuclease III [Leuconostoc citreum LBAE C10]
gi|421878297|ref|ZP_16309779.1| Exodeoxyribonuclease III [Leuconostoc citreum LBAE C11]
gi|372557684|emb|CCF24283.1| Exodeoxyribonuclease III [Leuconostoc citreum LBAE C10]
gi|390447911|emb|CCF25899.1| Exodeoxyribonuclease III [Leuconostoc citreum LBAE C11]
gi|390482118|emb|CCF28636.1| Exodeoxyribonuclease III [Leuconostoc citreum LBAE E16]
Length = 274
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 109/240 (45%), Gaps = 51/240 (21%)
Query: 42 LKFVTWNANSLLLRVKN-------NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
++ ++WN +S+ V++ W + N I PD+ A+QE ++ A G K
Sbjct: 1 MQLISWNIDSINAAVEHKSARGEMTW-DVLNQIAARQPDIFAIQETKLKAVGL--TKKQA 57
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWW--SLADSKYAGTALLVKKCFQPKKVSF 152
Q + D F +Y I+ S A S Y+GT +L ++ +P V +
Sbjct: 58 QTITD-------------------LFPDYHIYTNSSTARSGYSGTMMLSRQ--EPLSVDY 96
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
+ + +GR+I EFE +Y+ Y PN+G + R WD + ++
Sbjct: 97 PIINAPGDMDLEGRIITLEFENYYVSTVYTPNSG--SGLARLEERGAWDDAYRAYIQALD 154
Query: 213 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP+I+ GD+NV+HEEID+ +P K + GFT ER++F A+L+
Sbjct: 155 AQKPVIFSGDMNVAHEEIDLKNP---------------KTNHNSAGFTDQEREKFSALLR 199
>gi|229104299|ref|ZP_04234968.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|229117223|ref|ZP_04246601.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|423378475|ref|ZP_17355759.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
gi|423448243|ref|ZP_17425122.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|423540784|ref|ZP_17517175.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|423547021|ref|ZP_17523379.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|423623188|ref|ZP_17598966.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|228666123|gb|EEL21587.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|228678997|gb|EEL33205.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|401128837|gb|EJQ36520.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|401171972|gb|EJQ79193.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|401178742|gb|EJQ85915.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|401258965|gb|EJR65143.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|401635242|gb|EJS52998.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
Length = 252
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 108/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ Q KP+++C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRTYIKQLDEKKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEGFV 184
>gi|166030570|ref|ZP_02233399.1| hypothetical protein DORFOR_00233 [Dorea formicigenerans ATCC
27755]
gi|346308967|ref|ZP_08851071.1| exodeoxyribonuclease [Dorea formicigenerans 4_6_53AFAA]
gi|166029572|gb|EDR48329.1| exodeoxyribonuclease III [Dorea formicigenerans ATCC 27755]
gi|345901516|gb|EGX71315.1| exodeoxyribonuclease [Dorea formicigenerans 4_6_53AFAA]
Length = 250
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 107/244 (43%), Gaps = 59/244 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N + F +F D D+ +QE +M + D P HQ
Sbjct: 1 MKFISWNVNGIRACAGKG---FMDFFQETDADIFCIQETKMQEGQLELDTPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A K Y+GTA+ K+ +P VS+ L
Sbjct: 53 -------------------------YWNYAKKKGYSGTAIFTKQ--EPISVSYGL--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GRVI EFE FY + Y PN+ + E R KW++ ++ + KP+I+
Sbjct: 84 EHDQEGRVITLEFEDFYFITVYTPNS--QSELARLDYRMKWEEDFLTYLKKLEETKPVIF 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--F 276
CGDLNV+H EID+ +P K + GFT ER++F +L + F
Sbjct: 142 CGDLNVAHTEIDLKNP---------------KTNRKNAGFTDEERQKFTELLNAGFVDTF 186
Query: 277 LCFY 280
FY
Sbjct: 187 RYFY 190
>gi|419842315|ref|ZP_14365665.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|421501617|ref|ZP_15948576.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|386902224|gb|EIJ67066.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|402265769|gb|EJU15229.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 250
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F + D D+ LQE + A EL
Sbjct: 1 MKLISWNVNGIRACLKKG---FMEYFQAQDADIFCLQETKCSAG--------QVEL---- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ KK +P VS+ L +
Sbjct: 46 -----------------DLKGYHQYWNYAEKKGYSGTAIFTKK--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K E R W+ + ++ + + KP++ C
Sbjct: 85 HDQEGRVICLEFEDFYMVTVYTPNS--KNELERLDYRMIWEDEFRNYLSKLNEKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GD+NV+HEEID+ +P K + GFT ER +F +L+
Sbjct: 143 GDMNVAHEEIDLKNP---------------KTNRRNAGFTDEERNKFTELLQ 179
>gi|375342925|gb|AFA54864.1| exodeoxyribonuclease III [uncultured Eggerthella sp. SMG5]
Length = 261
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 107/247 (43%), Gaps = 67/247 (27%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
++ V+WN N L +K F + D DV ALQE ++ + D P HQ
Sbjct: 1 MRLVSWNVNGLRAVMKKG---FMDAFHELDADVFALQETKLQEGQIEMDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+WS A+ K Y+GTA+ K+ +P +V + L
Sbjct: 53 -------------------------FWSYAERKGYSGTAVFCKE--EPLRVIHEVGVPEL 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR-------IQEFVL--- 209
E GRV++ EFE ++L+N Y PN + E R WD R ++E VL
Sbjct: 86 DTE--GRVVICEFEQYWLVNVYTPNA--QSELARLDHRMAWDDRFRDICKGLEEGVLPDG 141
Query: 210 -QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
+ KP++ CGD NV+H+EID+ +P + + G PGF+ ER +F
Sbjct: 142 QAGNAKPVVMCGDFNVAHQEIDLKNP---------------RSNRGNPGFSDEERAKFTC 186
Query: 269 ILKEYLI 275
+L I
Sbjct: 187 LLDAGFI 193
>gi|229191862|ref|ZP_04318833.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
gi|228591624|gb|EEK49472.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
Length = 252
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 54/233 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L+ +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLDIE--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEE 181
>gi|407706141|ref|YP_006829726.1| hypothetical protein MC28_2905 [Bacillus thuringiensis MC28]
gi|407383826|gb|AFU14327.1| Exodeoxyribonuclease [Bacillus thuringiensis MC28]
Length = 252
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + G D
Sbjct: 1 MKLISWNVNGLRAVITKG--GFLEYLEESNADIFCLQEIKLQS-GQIDLN---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 48 ------------------LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ Q KP+I+C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKQLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEGFV 184
>gi|229018928|ref|ZP_04175771.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|229025172|ref|ZP_04181596.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|423390009|ref|ZP_17367235.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
gi|228736105|gb|EEL86676.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|228742371|gb|EEL92528.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|401640925|gb|EJS58651.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
Length = 252
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIDE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE F+++ Y PN+ K R KW+ + ++ + K P+I+C
Sbjct: 86 HDQEGRVITLEFEDFHMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDKKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNVSH+EID+ +P K + PGF+ ER++F IL+E +
Sbjct: 144 GDLNVSHKEIDLKNP---------------KSNRKNPGFSDEEREKFTKILEEGFV 184
>gi|170016857|ref|YP_001727776.1| exodeoxyribonuclease III [Leuconostoc citreum KM20]
gi|169803714|gb|ACA82332.1| Exodeoxyribonuclease III [Leuconostoc citreum KM20]
Length = 274
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 109/240 (45%), Gaps = 51/240 (21%)
Query: 42 LKFVTWNANSLLLRVKN-------NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
++ ++WN +S+ V++ W + N I PD+ A+QE ++ A G K
Sbjct: 1 MQLISWNIDSINAAVEHKSARGEMTW-DVLNQIAARQPDIFAIQETKLKAVGL--TKKQA 57
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWW--SLADSKYAGTALLVKKCFQPKKVSF 152
Q + D F +Y I+ S A S Y+GT +L ++ +P V +
Sbjct: 58 QTITD-------------------LFPDYHIYTNSSTARSGYSGTMMLSRQ--EPLSVDY 96
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
+ + +GR+I EFE +Y+ Y PN+G + R WD + ++
Sbjct: 97 PIINAPGDMDLEGRIITLEFENYYVSTVYTPNSG--SGLARLEERGAWDDAYRAYIQALD 154
Query: 213 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP+I+ GD+NV+HEEID+ +P K + GFT ER++F A+L+
Sbjct: 155 AQKPVIFSGDMNVAHEEIDLKNP---------------KTNHNSAGFTDQEREKFSALLR 199
>gi|427406978|ref|ZP_18897183.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
gi|425707453|gb|EKU70497.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
Length = 250
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 101/230 (43%), Gaps = 53/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKALDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + QP V++ + A ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--VQPLSVAYGI--GAPEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI EFE YL+ Y PN K R W+ + F+L KP++ CG
Sbjct: 86 DDEGRVITMEFEELYLVTVYTPNA--KRALERLDYRMAWEDAFRAFLLNLRAKKPVVVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+H+EID+ +P K + GFT ER +FG +L
Sbjct: 144 DLNVAHKEIDLKNP---------------KSNRHNAGFTDEERGKFGELL 178
>gi|423418359|ref|ZP_17395448.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
gi|401106632|gb|EJQ14593.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
Length = 252
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEE-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFEDFHMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDKKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNVSH+EID+ +P K + PGF+ ER++F IL+E +
Sbjct: 144 GDLNVSHKEIDLKNP---------------KSNRKNPGFSDEEREKFTKILEEGFV 184
>gi|291519655|emb|CBK74876.1| exodeoxyribonuclease III [Butyrivibrio fibrisolvens 16/4]
Length = 250
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 107/244 (43%), Gaps = 59/244 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KFV+WN N L + F +F D D+I LQE+++ + D P
Sbjct: 1 MKFVSWNVNGLRAVMGKG---FMDFFDGIDADIIGLQEIKLSEGQLEWDKP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
Y +W+ A+ K Y+GTA+ KK +P VS+ +
Sbjct: 49 ---------------------GYHAYWNYAEKKGYSGTAVFTKK--EPISVSYGI--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GRVI EFE FY + Y PN+ + E R W+ + ++ + + K +I
Sbjct: 84 EHDHEGRVITLEFEDFYFITCYTPNS--QNELKRLDYRMTWEDDFRAYLQKLNEKKGVIL 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--F 276
CGDLNV+HEEID+ +P K + GFT ER + +L + F
Sbjct: 142 CGDLNVAHEEIDIKNP---------------KTNRHNAGFTDEERAKMTELLSAGFVDSF 186
Query: 277 LCFY 280
FY
Sbjct: 187 RYFY 190
>gi|289435119|ref|YP_003464991.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171363|emb|CBH27905.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 251
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ + + D D+ LQE ++ A G D
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEYFD---SVDADIFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ KK +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTKK--EPLSVQYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I +V + KP++ C
Sbjct: 85 HDTEGRVITLEFEKFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GF+ ER +F A L+ + F
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTAFLEAGFVDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|228959948|ref|ZP_04121613.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|423628823|ref|ZP_17604572.1| exodeoxyribonuclease [Bacillus cereus VD154]
gi|228799691|gb|EEM46643.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|401268368|gb|EJR74416.1| exodeoxyribonuclease [Bacillus cereus VD154]
Length = 252
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 109/236 (46%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEEGFI 184
>gi|345881123|ref|ZP_08832651.1| exodeoxyribonuclease [Prevotella oulorum F0390]
gi|343920840|gb|EGV31568.1| exodeoxyribonuclease [Prevotella oulorum F0390]
Length = 250
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 105/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V + F D D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVGKD---FEQQFKALDADFFCLQETKMQ-AGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F YQ +W+ A+ K Y+GTA+ K+ P VS+ + +
Sbjct: 46 -----------------QFPGYQSFWNYAEKKGYSGTAIYAKQA--PLAVSYGIGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E+E+F+L+ Y PN+ ++E R +W+ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEYESFFLVTVYTPNS--QDELRRLDYRMQWEDDFQAYLHRLDEQKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+HEEID+ +P K + GFT ER + +L I
Sbjct: 143 GDMNVAHEEIDLKNP---------------KTNRRNAGFTDEERAKMTQLLGHGFI 183
>gi|357060646|ref|ZP_09121414.1| exodeoxyribonuclease [Alloprevotella rava F0323]
gi|355375951|gb|EHG23219.1| exodeoxyribonuclease [Alloprevotella rava F0323]
Length = 259
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 107/234 (45%), Gaps = 55/234 (23%)
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELK 98
K +KF++WN N L + F + D D LQE +M A +L
Sbjct: 7 KKRMKFISWNVNGLR---ACDGKGFRDAFRNLDADFFCLQETKMQAG----------QLD 53
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT 157
D F+ Y+ +W+ A+ K Y+GTA+ K P V++ L
Sbjct: 54 ID-------------------FEGYESYWNYAEKKGYSGTAIFTKH--HPLNVTYGLGHE 92
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PL 216
+++ +GRVI E + F+L+ Y PN+ ++E R W+ +E++L+ + K P+
Sbjct: 93 --EHDHEGRVITLEMDNFFLITVYTPNS--QDELRRLDYRMTWEDAFREYLLELNKKKPV 148
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
I CGDLNV+H+EID+ +P K + GFT ER++ +L
Sbjct: 149 IVCGDLNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTQLL 187
>gi|421491432|ref|ZP_15938798.1| exodeoxyribonuclease III [Streptococcus anginosus SK1138]
gi|400371534|gb|EJP24493.1| exodeoxyribonuclease III [Streptococcus anginosus SK1138]
Length = 275
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 106/240 (44%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + T D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVTLDADIIAIQETKLSAKG---PTKKH- 56
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
L ++ L F NYQ W A YAGT L K+ PK ++
Sbjct: 57 -------------LTILEEL----FPNYQHTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EFE F++ Y PN G + + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDAEGRIITLEFEKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTTL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DKEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
>gi|423311909|ref|ZP_17289846.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
gi|392689288|gb|EIY82566.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
Length = 252
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LKF++WN N L F + + D LQE +M QE + D
Sbjct: 2 LKFISWNVNGLRACYDKG---FVDVFHRLEADFFCLQETKM------------QEGQLDA 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K F+ Y +W+ A+ K Y+GTA+ K +P V++ L +
Sbjct: 47 K-----------------FEGYHSYWNYAEKKGYSGTAIFSK--VKPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E E+FYL+ Y PN+ +EE R KW+ + ++ + KP+I C
Sbjct: 86 HDHEGRVITLELESFYLITVYTPNS--QEELRRLDYRMKWEDDFRAYLKKLEEKKPVIVC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+H+EID+ +P K + GFT ER +F +L+
Sbjct: 144 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERTKFTTLLE 180
>gi|255993955|ref|ZP_05427090.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
gi|255993623|gb|EEU03712.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
Length = 252
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 55/231 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KF++WN N + +K F + + PD A+QE +M +
Sbjct: 3 KFISWNVNGIRACIKKG---FLDVLEGESPDYFAVQETKM-------------------Q 40
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+EE L Y +W A K Y+GT +L K+ + VS S ++
Sbjct: 41 EGQEEILT----------NGYHQYWDSAKRKGYSGTLVLSKE----EAVSTSKGIGIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRV+ A+F+ FYL+N Y PN+ K E R+ W+ +++V++ + KP+I CG
Sbjct: 87 DEEGRVVTADFKDFYLVNVYVPNS--KPELARLDYRQHWEDDFRDYVVKLNKEKPVIICG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
DLNV+H EID+ +P K + PGFT ER++F +L+
Sbjct: 145 DLNVAHTEIDLKNP---------------KTNRRNPGFTDEEREKFTELLE 180
>gi|237750354|ref|ZP_04580834.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
gi|229373884|gb|EEO24275.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
Length = 255
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T D DV +QE +M
Sbjct: 1 MKMISWNVNGLRACMTKG---FMDFFNTIDADVFCIQESKMH------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
R+ S F Y +W+ A+ K Y+GT +L K + +S +
Sbjct: 40 -----------RSQSDFVFDGYYQFWNEAEKKGYSGTIILSK----TEPLSVCNDMGIAH 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GR+I+AE+ TF+L+N Y PN+ K E R++W+ + F+ KP+I C
Sbjct: 85 HDKEGRIIVAEYATFFLVNVYTPNS--KRELERLTYRQEWEDDFRSFLKGLEQYKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + GFT ER++ +L I
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEEREKMSVLLDSGFI 183
>gi|340624333|ref|YP_004742786.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis X1]
gi|339904601|gb|AEK20043.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis X1]
Length = 249
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +KN F +F+ PD++ +QE ++ + +L D
Sbjct: 1 MKMLSWNVNGIRACLKNG---FMDFLERESPDIMCIQETKVQSG--------QVQLGLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A+ K Y+GTA+ K +P +VS+ + +
Sbjct: 49 --------------------GYFQYWNYAERKGYSGTAIFTK--IKPNEVSYGIGNN--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI +F+ +YLLN Y PN+ + + R+KWD+ +V K P+I+C
Sbjct: 85 HDGEGRVITLKFDEYYLLNVYTPNS--QRGLTRLEYRQKWDQDFLNYVKTLENKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ +P K + GFT ER F I+
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNVKNAGFTPEERNGFDNIV 178
>gi|373461425|ref|ZP_09553165.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
gi|371952383|gb|EHO70222.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
Length = 251
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 102/230 (44%), Gaps = 55/230 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KFV+WN N L V +F+ T + D LQE +M A G D
Sbjct: 3 KFVSWNVNGLRACVS---KDFAQTFETLNADFFCLQETKMQA-GQLDLQ----------- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
F Y +W+ AD K Y+GTA+ +K +P V++ + ++
Sbjct: 48 -----------------FPGYTSFWNYADKKGYSGTAIYARK--EPLSVAYGIGID--EH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI E+E FYL+N Y PN ++ R W+ Q ++ + KP+I CG
Sbjct: 87 DHEGRVITLEYEDFYLVNVYTPNA--QDGLRRLDYRMTWEDDFQAYLHRLDARKPVIVCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
D+NV+HEEID+ +P K + GFT ER + +L
Sbjct: 145 DMNVAHEEIDLKNP---------------KTNHRNAGFTDEERAKMTQLL 179
>gi|150005146|ref|YP_001299890.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|294778957|ref|ZP_06744373.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|319642656|ref|ZP_07997302.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
gi|345520248|ref|ZP_08799647.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|149933570|gb|ABR40268.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|254836074|gb|EET16383.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|294447266|gb|EFG15850.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|317385744|gb|EFV66677.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
Length = 252
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LKF++WN N L F + + D LQE +M QE + D
Sbjct: 2 LKFISWNVNGLRACYDKG---FVDVFHRLEADFFCLQETKM------------QEGQLDA 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K F+ Y +W+ A+ K Y+GTA+ K +P V++ L +
Sbjct: 47 K-----------------FEGYHSYWNYAEKKGYSGTAIFSK--VKPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E E+FYL+ Y PN+ +EE R KW+ + ++ + KP+I C
Sbjct: 86 HDHEGRVITLELESFYLITVYTPNS--QEELRRLDYRMKWEDDFRAYLKKLEEKKPVIVC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+H+EID+ +P K + GFT ER +F +L+
Sbjct: 144 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKFTTLLE 180
>gi|259047804|ref|ZP_05738205.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
gi|259035481|gb|EEW36736.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
Length = 254
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 113/236 (47%), Gaps = 52/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K TWN N + R N ++ +PD++ LQE T
Sbjct: 1 MKLATWNVNGI--RSVLNKGALQEYVLESNPDILCLQE---------------------T 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA +++ + M F Y+++++ A K Y+GTA+ K+ +P V + + +
Sbjct: 38 KAQQDQVELGME------FSEYEVFFNSAVKKGYSGTAIFTKE--KPLSVEYGI--GIEE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI AE+E FYL+ Y PN K + + + R+ W+ F+ + KP+I+C
Sbjct: 88 HDQEGRVITAEYEKFYLVTVYTPNA--KRDLSRLEYRQVWEDDFLAFIKKLEETKPVIFC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+++P K + GFT ER +F ++ L+
Sbjct: 146 GDLNVAHKEIDLANP---------------KTNTMNAGFTKEERAKFDQVVNNDLV 186
>gi|423611960|ref|ZP_17587821.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
gi|401246967|gb|EJR53311.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
Length = 252
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 108/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V + L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVMYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F +L+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCVLEEGFI 184
>gi|126698940|ref|YP_001087837.1| exodeoxyribonuclease [Clostridium difficile 630]
gi|254974886|ref|ZP_05271358.1| putative exodeoxyribonuclease [Clostridium difficile QCD-66c26]
gi|255092273|ref|ZP_05321751.1| putative exodeoxyribonuclease [Clostridium difficile CIP 107932]
gi|255100359|ref|ZP_05329336.1| putative exodeoxyribonuclease [Clostridium difficile QCD-63q42]
gi|255306301|ref|ZP_05350472.1| putative exodeoxyribonuclease [Clostridium difficile ATCC 43255]
gi|255314013|ref|ZP_05355596.1| putative exodeoxyribonuclease [Clostridium difficile QCD-76w55]
gi|255516693|ref|ZP_05384369.1| putative exodeoxyribonuclease [Clostridium difficile QCD-97b34]
gi|255649791|ref|ZP_05396693.1| putative exodeoxyribonuclease [Clostridium difficile QCD-37x79]
gi|306519893|ref|ZP_07406240.1| putative exodeoxyribonuclease [Clostridium difficile QCD-32g58]
gi|384360536|ref|YP_006198388.1| exodeoxyribonuclease III [Clostridium difficile BI1]
gi|423090927|ref|ZP_17079213.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
gi|115250377|emb|CAJ68199.1| Exodeoxyribonuclease [Clostridium difficile 630]
gi|357556042|gb|EHJ37664.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
Length = 250
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V F +F D D+ LQE ++ +
Sbjct: 1 MKFISWNVNGIRACVGKG---FLDFFKEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ KK +P KV + + +
Sbjct: 45 -------------LDLPGYFQY---WNYAERKGYSGTAIFTKK--EPLKVMYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE FY + Y PN+ + E + R +W+ +++ + KP+I C
Sbjct: 85 HDKEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+H+EID+ +P K + GFT ER++F +L I
Sbjct: 143 GDMNVAHKEIDLKNP---------------KNNMKNAGFTKEEREKFSKLLDSGFI 183
>gi|260682949|ref|YP_003214234.1| exodeoxyribonuclease [Clostridium difficile CD196]
gi|260686547|ref|YP_003217680.1| exodeoxyribonuclease [Clostridium difficile R20291]
gi|260209112|emb|CBA62286.1| putative exodeoxyribonuclease [Clostridium difficile CD196]
gi|260212563|emb|CBE03542.1| putative exodeoxyribonuclease [Clostridium difficile R20291]
Length = 255
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V F +F D D+ LQE ++ +
Sbjct: 6 MKFISWNVNGIRACVGKG---FLDFFKEVDADIFCLQETKLQEGQIE------------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ KK +P KV + + +
Sbjct: 50 -------------LDLPGYFQY---WNYAERKGYSGTAIFTKK--EPLKVMYGI--NIEE 89
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE FY + Y PN+ + E + R +W+ +++ + KP+I C
Sbjct: 90 HDKEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIVC 147
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+H+EID+ +P K + GFT ER++F +L I
Sbjct: 148 GDMNVAHKEIDLKNP---------------KNNMKNAGFTKEEREKFSKLLDSGFI 188
>gi|288929660|ref|ZP_06423504.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
gi|288329165|gb|EFC67752.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
Length = 249
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 102/231 (44%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +F N D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRAVVG---KDFENTFKALDADFFCLQETKMQA-GQLDLQ---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y +W+ AD K Y+GTA+ + +P VS+ + +
Sbjct: 47 ------------------FDGYDSFWNYADKKGYSGTAIYTRH--KPLNVSYGIGID--Q 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E TF+L+ Y PN+ +EE R +W+ Q ++ KP+I C
Sbjct: 85 HDHEGRVITLEMPTFFLVTVYTPNS--QEELRRLDYRMQWEDDFQAYLHNLDKCKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GD+NV+H+EID+ +P K + GFT ER++ +L
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNRRNAGFTDEERQKMTQLL 178
>gi|423385244|ref|ZP_17362500.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|423528399|ref|ZP_17504844.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
gi|401635300|gb|EJS53055.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|402452062|gb|EJV83881.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
Length = 252
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKD--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEEGFV 184
>gi|340349685|ref|ZP_08672691.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|387133768|ref|YP_006299740.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|445112647|ref|ZP_21377202.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
gi|339610439|gb|EGQ15291.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|386376616|gb|AFJ08042.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|444841476|gb|ELX68491.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
Length = 250
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 90/197 (45%), Gaps = 44/197 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V F D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRACVTKG---FKESFAEIDADFFCLQETKMQA-GQLDIA---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y+ +W+ AD K Y+GTA+ K +P VS+ L +
Sbjct: 47 ------------------FDGYESYWNYADKKGYSGTAIFTKH--KPLSVSYGL--GIDE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPN--NGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
++ +GRVI E E FYL+ Y PN +G K R +W+ Q +V + KP+I
Sbjct: 85 HDHEGRVITLEMEKFYLVTCYTPNAQDGLKR----LDYRMQWEDDFQAYVKRLDEKKPVI 140
Query: 218 WCGDLNVSHEEIDVSHP 234
CGDLNV+HEEID+ +P
Sbjct: 141 VCGDLNVAHEEIDLKNP 157
>gi|260909404|ref|ZP_05916112.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
gi|260636496|gb|EEX54478.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
Length = 249
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 104/231 (45%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +F N + D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRAVVG---KDFENIFKSLDADFFCLQETKMQA-GQLDLQ---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y+ +W+ AD K Y+GTA+ + +P V++ + +
Sbjct: 47 ------------------FDGYESFWNYADKKGYSGTAIYTRH--KPLNVTYGIGID--Q 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E TF+L+ Y PN+ ++E R +W+ Q ++ KP+I C
Sbjct: 85 HDHEGRVITLEMPTFFLVTVYTPNS--QDELRRLDYRMQWEDDFQAYLHDLDKRKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GD+NV+H+EID+ +P K + GFT ER++ +L
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNRRNAGFTDEERQKMTQLL 178
>gi|363893051|ref|ZP_09320191.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402837946|ref|ZP_10886461.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
gi|361961782|gb|EHL14961.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402274377|gb|EJU23561.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
Length = 251
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 112/244 (45%), Gaps = 59/244 (24%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
+KFV+WN N L +R K F + FD D LQE+++ +N EL
Sbjct: 1 MKFVSWNVNGLRAVREKG----FEDIFKNFDADAFCLQEIKL--------QENQIELH-- 46
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
F Y +W+ A+ K Y+GTA+ K +P V + L
Sbjct: 47 -------------------FDGYYEYWNYANKKGYSGTAIYTKH--KPIDVHYGL--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GR+I E+E +Y+ Y PN + E R+KW++ +E+ + KP+I
Sbjct: 84 EHDMEGRLITLEYENYYIATVYTPNA--QPELARLAYRQKWEEDFREYFKKLDEKKPVII 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--F 276
CGD+NV+H+EID+ +P K + PGF+ ER++F +L I F
Sbjct: 142 CGDMNVAHQEIDLKNP---------------KNNRKNPGFSDEEREKFTLLLNAGFIDTF 186
Query: 277 LCFY 280
FY
Sbjct: 187 RYFY 190
>gi|340352974|ref|ZP_08675807.1| exodeoxyribonuclease III [Prevotella pallens ATCC 700821]
gi|339611994|gb|EGQ16810.1| exodeoxyribonuclease III [Prevotella pallens ATCC 700821]
Length = 250
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 106/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V + E +F+ + D LQE +M QE + D
Sbjct: 1 MKFISWNVNGLRACVTKGFKE--SFVE-LNADFFCLQETKM------------QEGQLDI 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y+ +W+ AD K Y+GTA+ K +P V + L+ +
Sbjct: 46 -----------------TFDGYESYWNYADKKGYSGTAIFTKH--KPINVHYGLDID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E ETF+L+ Y PN+ ++ R KW+ Q ++ Q K P++ C
Sbjct: 85 HDHEGRVITLEMETFFLVTCYTPNS--QDGLKRLDYRMKWEDDFQAYIKQLDKKKPVVIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+HEEID+ +P K + GFT ER + L I
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFTDEERAKMTQFLNNGFI 183
>gi|373497233|ref|ZP_09587764.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
gi|404366853|ref|ZP_10972230.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|313690462|gb|EFS27297.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|371963724|gb|EHO81271.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
Length = 253
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 114/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V+ F ++ + D+ +QE ++
Sbjct: 1 MKLISWNVNGLRAAVQKG---FLDYFKNENADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L + Y +W+ A+ K Y+GTA+ KK +P +VS+ L +
Sbjct: 39 ---QEGQIEL-------ELEGYHQYWNYAEKKGYSGTAIFTKK--KPIEVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E++ FY++ Y PN+ +EE R W+ + +V++ KP+I C
Sbjct: 85 HDKEGRVITLEYDDFYMITVYTPNS--QEELARLSYRMSWEDEFRNYVMKLDKLKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GF+ ER +F +LK + F
Sbjct: 143 GDLNVAHQEIDLKNP---------------KSNRKNAGFSDEERAKFTELLKNGFVDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 HFY 190
>gi|160894365|ref|ZP_02075142.1| hypothetical protein CLOL250_01918 [Clostridium sp. L2-50]
gi|156864066|gb|EDO57497.1| exodeoxyribonuclease III [Clostridium sp. L2-50]
Length = 262
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 55/239 (23%)
Query: 34 EENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
++ +K ++WN N + V N F +F D D+ +QE +M
Sbjct: 4 DQTGGSTTMKMISWNVNGIRACVGKN---FMDFFKEADADIFCIQESKM----------- 49
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
+E +L L P + Y W+ A+ K Y+GTA+ KK +P V++
Sbjct: 50 -----------QEGQL----QLELPGYYQY---WNYAEKKGYSGTAIFAKK--EPLSVAY 89
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 211
+ +++ +GRVI E++ FY++ Y PN+ + E R KW+ +E++ Q
Sbjct: 90 GI--GIEEHDHEGRVITLEYDNFYMVTVYTPNS--QNELARLDYRMKWEDDFREYLKQLE 145
Query: 212 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ CGD+NV+H EID+ +P K + GFT ER++F +L
Sbjct: 146 QTKPVVVCGDMNVAHTEIDLKNP---------------KTNRKNAGFTDEEREKFSTLL 189
>gi|429726547|ref|ZP_19261335.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
gi|429146016|gb|EKX89089.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
Length = 267
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 104/240 (43%), Gaps = 57/240 (23%)
Query: 35 ENSKKDPLKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
E K +KF++WN N L R K F D D LQE ++
Sbjct: 11 ETHKNSMMKFISWNVNGLRACREKG----FEESFAQLDADCFCLQETKL----------- 55
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
QE + D F Y+ +W+ A+ K Y+GT + + +P V +
Sbjct: 56 -QEGQIDI-----------------AFDGYESYWNYAEKKGYSGTCIFTR--IKPLSVRY 95
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
L +++ +GRVI EFE YLL Y PN+ ++ R WD + +V Q
Sbjct: 96 GL--GIEEHDHEGRVITLEFEDLYLLTVYTPNS--QDGLRRLDYRMTWDDDFRAYVQQLD 151
Query: 213 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP++ CGDLNV+H+EID+ +P K + GFT ER++F +L+
Sbjct: 152 AHKPVVICGDLNVAHQEIDLKNP---------------KTNRKNAGFTDEERQKFSQLLE 196
>gi|260584873|ref|ZP_05852618.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
gi|260157530|gb|EEW92601.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
Length = 253
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 108/236 (45%), Gaps = 52/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K TWN N + R N ++ PD++ LQE T
Sbjct: 1 MKLTTWNVNGI--RSVLNKGALQEYVLEAQPDILCLQE---------------------T 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA E+ + M F Y +W+ A K Y+GTA+ K+ +P V + L +
Sbjct: 38 KAQPEQVDLGME------FAGYHAYWNSAVKKGYSGTAIFTKE--EPISVQYGL--GIEE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI AE+ +YL+ Y PN K + R+ W+ F+ + KP+I+C
Sbjct: 88 HDQEGRVITAEYADYYLVTVYTPNA--KRDLTRLSYRQVWEDDFLAFIKKLEETKPVIFC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+++P K + GFT ER++F I++ L+
Sbjct: 146 GDLNVAHKEIDLANP---------------KTNTKNAGFTKEEREKFDQIVENGLV 186
>gi|148225041|ref|NP_001085229.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
laevis]
gi|47937489|gb|AAH72056.1| MGC78928 protein [Xenopus laevis]
Length = 316
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 116/249 (46%), Gaps = 52/249 (20%)
Query: 27 ETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG 86
+ + + + KK LK +WN + + +K + N++ DP ++ LQE++
Sbjct: 46 DAPDNVTSADGKKYTLKISSWNVDGIRAWIKK---QGLNWVREEDPHIMCLQEIKC---- 98
Query: 87 SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKC 144
EKL+ P + + +W+ D K Y+G A+L K
Sbjct: 99 -------------------AEKLLPPDVKDMPEYPHK--YWACPDEKEGYSGVAMLCKD- 136
Query: 145 FQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 204
+P V++ + +++ +GRVI AEF++F+++ Y PN+ R++WD
Sbjct: 137 -KPLNVTYGI--GIEEHDKEGRVITAEFDSFFVIAAYIPNSS--RGLVRLDYRQRWDVDF 191
Query: 205 QEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 263
+ ++ S KPLI CGDLNV+H+EID+ +P K + PGFT ER
Sbjct: 192 RAYLKGLDSKKPLILCGDLNVAHQEIDLKNP---------------KTNKKTPGFTPQER 236
Query: 264 KRFGAILKE 272
+ FG +L E
Sbjct: 237 QGFGELLAE 245
>gi|392395397|ref|YP_006431999.1| exodeoxyribonuclease III [Desulfitobacterium dehalogenans ATCC
51507]
gi|390526475|gb|AFM02206.1| exodeoxyribonuclease III [Desulfitobacterium dehalogenans ATCC
51507]
Length = 250
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 110/245 (44%), Gaps = 61/245 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F D+ LQE ++
Sbjct: 1 MKLISWNVNGLRACLNKG---FMDFFEQEQADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+EE++ PF+ Y +W+ A K Y+GTA+ K +P VS+ + K
Sbjct: 39 ---QEEQI---------PFQLEGYYAYWNFAQKKGYSGTAVFTKN--EPLSVSYGIGKE- 83
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+++ +GRVI EFETFYL+ YAPN+ + R W++ ++ KP+I
Sbjct: 84 -EHDQEGRVITLEFETFYLVTVYAPNS--QRGLARLDYRMTWEEEFLSYLKSLEKSKPVI 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI-- 275
+CGDLNV+H EID+ +P K + GF+ ER +F +LK I
Sbjct: 141 FCGDLNVAHTEIDLKNP---------------KSNRKNAGFSDEERAKFSGLLKNGFIDT 185
Query: 276 FLCFY 280
F FY
Sbjct: 186 FRHFY 190
>gi|423458084|ref|ZP_17434881.1| exodeoxyribonuclease [Bacillus cereus BAG5X2-1]
gi|401148468|gb|EJQ55961.1| exodeoxyribonuclease [Bacillus cereus BAG5X2-1]
Length = 252
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKLQDGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYAYWNYAVKKGYSGTAIFSKK--EPLAVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ Q K P+++C
Sbjct: 86 HDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRAYIKQLDKKKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEGFI 184
>gi|340758618|ref|ZP_08695204.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
gi|251835305|gb|EES63846.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
Length = 253
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 114/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V+ F ++ + D+ +QE ++
Sbjct: 1 MKLISWNVNGLRAAVQKG---FLDYFKNENADIFCIQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L + Y +W+ A+ K Y+GTA+ KK +P +VS+ L +
Sbjct: 39 ---QEGQIEL-------DLEGYHQYWNYAEKKGYSGTAIFTKK--KPIEVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+E FY++ Y PN+ +EE R W+ + +V++ KP+I C
Sbjct: 85 HDKEGRVITLEYEDFYMITVYTPNS--QEELARLDYRMSWEDEFRNYVMKLDKLKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GF+ ER +F +L+ I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KSNRKNAGFSDEERAKFTELLENGFIDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 HFY 190
>gi|159906029|ref|YP_001549691.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
gi|159887522|gb|ABX02459.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
Length = 249
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +KN F NF+ PD++ +QE ++ + +L D
Sbjct: 1 MKMISWNVNGIRACLKNG---FMNFLERESPDIMCIQETKVQSG--------QVQLGLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A+ K Y+GTA+ K +P +V + + +
Sbjct: 49 --------------------GYFQYWNYAERKGYSGTAVFTK--IKPNEVIYGIGNN--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI +F+ +YL+N Y PN+ + + R+KWD+ +V K P+I+C
Sbjct: 85 HDGEGRVITLKFDEYYLVNVYTPNS--QRGLTRLEYRQKWDQDFLNYVKTLENKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+E+D+ +P K + GFT ERK F I+
Sbjct: 143 GDLNVAHKEVDLKNP---------------KTNVKNAGFTPEERKGFDNIV 178
>gi|472869|emb|CAA54234.1| ARP protein [Arabidopsis thaliana]
Length = 527
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 115/239 (48%), Gaps = 61/239 (25%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K +TWN N L LL+ ++ + NF D++ LQE ++ KD + +
Sbjct: 267 VKVMTWNVNGLRGLLKFESFSALQLAQRENF------DILCLQETKLQV---KDVEEIKK 317
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFS 153
L D S +WS + SK Y+GTA++ + +P V +
Sbjct: 318 TLIDGYDHS---------------------FWSCSVSKLGYSGTAIISR--IKPLSVRYG 354
Query: 154 LEKTALK-YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
T L ++ +GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + +
Sbjct: 355 ---TGLSGHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELE 410
Query: 213 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GDLN +HEEID+ +P NK GFTI ER+ FGA L
Sbjct: 411 KSKPVVLTGDLNCAHEEIDIFNP------------AGNKR---SAGFTIEERQSFGANL 454
>gi|15227354|ref|NP_181677.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
gi|8488963|sp|P45951.2|ARP_ARATH RecName: Full=Apurinic endonuclease-redox protein; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|3241944|gb|AAC23731.1| DNA-(apurinic or apyrimidinic site) lyase (ARP) [Arabidopsis
thaliana]
gi|330254890|gb|AEC09984.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 536
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 115/239 (48%), Gaps = 61/239 (25%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K +TWN N L LL+ ++ + NF D++ LQE ++ KD + +
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSALQLAQRENF------DILCLQETKLQV---KDVEEIKK 326
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFS 153
L D S +WS + SK Y+GTA++ + +P V +
Sbjct: 327 TLIDGYDHS---------------------FWSCSVSKLGYSGTAIISR--IKPLSVRYG 363
Query: 154 LEKTALK-YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
T L ++ +GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + +
Sbjct: 364 ---TGLSGHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELE 419
Query: 213 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GDLN +HEEID+ +P NK GFTI ER+ FGA L
Sbjct: 420 KSKPVVLTGDLNCAHEEIDIFNP------------AGNKR---SAGFTIEERQSFGANL 463
>gi|406882429|gb|EKD30227.1| hypothetical protein ACD_78C00115G0011 [uncultured bacterium (gcode
4)]
Length = 254
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 111/243 (45%), Gaps = 53/243 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N + + F ++ PDVI LQEV+
Sbjct: 1 MKFVSWNVNGVRSVLTKG---FLEYLEKESPDVIGLQEVK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ EE+ L S YQ++W+ A+ K Y+GTA+ K +P V + +
Sbjct: 38 --ATEEQFPAGLDLQSL---GYQVYWNAAERKGYSGTAVFSK--IKPLSVRYGY--GMAE 88
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GR+I EFE ++ + Y PN K E + R+ WD +++ + KP+I
Sbjct: 89 HDTEGRIITLEFEEYFFVTVYTPNA--KRELERLEYRQLWDSLFFDYLKRLEAEKPVIVS 146
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H++ID+S+P K + G GFT ER FG L + I F
Sbjct: 147 GDLNVAHKDIDLSNP---------------KANRGSAGFTDEERDGFGKFLSDGFIDTFR 191
Query: 278 CFY 280
FY
Sbjct: 192 HFY 194
>gi|49478354|ref|YP_037804.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|301055229|ref|YP_003793440.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|423550511|ref|ZP_17526838.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
gi|49329910|gb|AAT60556.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|300377398|gb|ADK06302.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|401190127|gb|EJQ97177.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
Length = 252
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 111/236 (47%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F ++ + D+ +QE+++ QE + D
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCVQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 NV-----------------EGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K + R KW+ + ++ + K +++C
Sbjct: 86 HDQEGRVITLEFEDFYIITLYTPNS--KRGLERLEYRMKWEDDFRAYIKRLDEKKSVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEGFI 184
>gi|376263099|ref|YP_005149819.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
gi|373947093|gb|AEY68014.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
Length = 253
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 108/235 (45%), Gaps = 55/235 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K V+WN N L + F +F D D+ +QE ++ + EL+
Sbjct: 3 KLVSWNVNGLRACIGKG---FWDFFKEVDADIFCVQETKLQ--------EGQIELE---- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y+ +W+ A K Y+GTA+ K K VS S ++
Sbjct: 48 -----------------LEGYEHYWNYAVKKGYSGTAIFTK----IKPVSSSCGIGIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 220
+ +GRVI EFE ++L+N Y PN+ K E + R KW+ + ++ Q KP+I CG
Sbjct: 87 DNEGRVITLEFEEYFLVNVYTPNS--KRELERLEYRMKWEDDFRVYLKQLEQTKPVIICG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
D+NV+H+EID+ +P NK GFT+ ER++F +L++ +
Sbjct: 145 DMNVAHQEIDIKNPR------------SNKR---SAGFTMEEREKFSELLEQGFV 184
>gi|226228755|ref|YP_002762861.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
gi|226091946|dbj|BAH40391.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
Length = 265
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 112/246 (45%), Gaps = 70/246 (28%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +WN N L +K F FI T PDV+ LQE T
Sbjct: 1 MKIYSWNVNGLRAVLKKGL--FMPFIETHQPDVLCLQE---------------------T 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK-TAL 159
K+ RE+ I Y +W+ A +K Y+GTA+ + +P V+ K A
Sbjct: 38 KSEREQVEI--------DLAGYHEYWNSATTKGYSGTAIFSRT--EPLSVTNGFAKAVAK 87
Query: 160 KY----------EPDGRVILAEFETFYLLNTYAPNNGWKEEENSF-QRRRKWDKRIQEFV 208
KY E +GRVI AEFE F+++ Y PN K++ + R + WD F+
Sbjct: 88 KYTLVDDAGRDSETEGRVITAEFEKFFVVTVYTPNA--KDDLSRLPLRSQHWDA---AFL 142
Query: 209 LQCSG----KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERK 264
C KP+++CGDLNV+H E+D+++P+ PN+ G+ GFT ER+
Sbjct: 143 AHCKALEMKKPVVFCGDLNVAHTELDLANPK------------PNR---GRKGFTDEERQ 187
Query: 265 RFGAIL 270
F + L
Sbjct: 188 GFQSFL 193
>gi|262067405|ref|ZP_06027017.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
gi|291378968|gb|EFE86486.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
Length = 253
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 107/232 (46%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKE--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMITVYTPNS--KDELQRLDYRMVWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+H+EID+ +P K + GFT ER +F +L+
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLE 179
>gi|260592674|ref|ZP_05858132.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
gi|260535444|gb|EEX18061.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
Length = 249
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V +F F+ D LQE +M AG D
Sbjct: 1 MKLISWNVNGLRACVG---KDFEQQFKDFNADFFCLQETKM-QAGQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
LS P +++Y W+ AD K Y+GTA+ + +P V++ ++ +
Sbjct: 45 -------------LSFPGYESY---WNYADKKGYSGTAIFTRH--KPLSVTYGIDID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E + FYL+ Y PN+ ++E + R KW+ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEMDDFYLVTVYTPNS--QDELRRLEYRMKWEDDFQSYLHKLDEIKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+H+EID+ +P K + GFT ER++ +L I
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNRRNAGFTDEERQKMTQLLSNGFI 183
>gi|45358575|ref|NP_988132.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis S2]
gi|44921333|emb|CAF30568.1| exonuclease III [Methanococcus maripaludis S2]
Length = 249
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +KN F NF+ PD++ +QE ++ + +L D
Sbjct: 1 MKMLSWNVNGIRACLKNG---FMNFLERESPDIMCIQETKVQSG--------QVQLGLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A+ K Y+GTA+ K +P V +E + +
Sbjct: 49 --------------------GYFQYWNYAERKGYSGTAIFTK--IKPNNVILGMENS--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
+ +GRVI EF+ +YL+N Y PN+ + + R+KWD+ ++ + KP+++C
Sbjct: 85 HNNEGRVITLEFDEYYLVNVYTPNS--QRGLTRLEYRQKWDEDFLSYIKTLETKKPVVFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ +P K + GFT ER F I+
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNVKNAGFTPEERNGFDNIV 178
>gi|406882207|gb|EKD30059.1| hypothetical protein ACD_78C00169G0004 [uncultured bacterium (gcode
4)]
Length = 267
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 115/243 (47%), Gaps = 53/243 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + + + E+ + T +PD+I LQEV+
Sbjct: 13 MKAVSWNVNGVRSVLTKGFLEY---LATENPDIIGLQEVK-------------------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ EE+ L S Y I+W+ A+ K Y+GTA+ K +P V + L +
Sbjct: 50 --ATEEQFPAGFDLQS---MGYHIYWNAAERKGYSGTAVFSK--VEPISVRYGLGMK--E 100
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GR+I EFE ++ + Y PN K E + R+ WD +++ + KP+I C
Sbjct: 101 HDQEGRIITLEFEKYFFVTVYTPNA--KSELERLEYRQLWDSLFFDYLKRLEVEKPVIVC 158
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+++P+ PN+ W GFT ER FG L I F
Sbjct: 159 GDLNVAHQEIDLTNPK------------PNR--W-NAGFTDEERAGFGHYLANGFIDTFR 203
Query: 278 CFY 280
FY
Sbjct: 204 HFY 206
>gi|294781992|ref|ZP_06747324.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
gi|340754328|ref|ZP_08691085.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|229423850|gb|EEO38897.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|294481803|gb|EFG29572.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
Length = 253
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKE--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMITVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER +F +L+ I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLESGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|317503938|ref|ZP_07961946.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
gi|315664964|gb|EFV04623.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
Length = 250
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +FS + + D LQE +M A EL+
Sbjct: 1 MKFISWNVNGLRACVGK---DFSQSFESLNADFFCLQETKMQAG--------QLELQ--- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y +W+ A+ K Y+GTA+ +K +P VS+ + +
Sbjct: 47 ------------------FPGYTSYWNYAEKKGYSGTAIYTRK--EPLAVSYGIGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E++ F+L+ Y PN +EE R W+ Q ++ Q K P+I C
Sbjct: 85 HDHEGRVITLEYDKFFLVTVYTPNA--QEELRRLDYRMTWEDAFQAYLHQLDAKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GD+NV+H+EID+ +P K + GFT ER + +L
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNRRSAGFTDEERSKMTQLL 178
>gi|170665740|gb|ACB29409.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 538
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 112/236 (47%), Gaps = 57/236 (24%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K +TWN N L LL+ ++ + NF D++ LQE ++ KD + +
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSALQLAQRENF------DILCLQETKLQV---KDVEEIKK 326
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFS 153
L D S +WS + SK Y+GTA++ + +P V +
Sbjct: 327 TLIDGYDHS---------------------FWSCSVSKLGYSGTAIISR--IKPLSVRYG 363
Query: 154 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 212
+ ++ +GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + +
Sbjct: 364 TGLSGSDHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELEK 422
Query: 213 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
KP++ GDLN +HEEID+ +P NK GFT ER+ FGA
Sbjct: 423 SKPVVLTGDLNCAHEEIDIFNP------------AGNKR---SAGFTEEERQSFGA 463
>gi|227499267|ref|ZP_03929379.1| exodeoxyribonuclease III [Anaerococcus tetradius ATCC 35098]
gi|227218676|gb|EEI83907.1| exodeoxyribonuclease III [Anaerococcus tetradius ATCC 35098]
Length = 273
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 111/240 (46%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL + ++ + + I D D+IALQE ++PA G K H+
Sbjct: 1 MKFISWNIDSLNAALTSDSARAKLSRDVLDTIKNEDADIIALQETKLPATG---PSKKHK 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWW-SLADS---KYAGTALLVKKCFQPKKVS 151
E KL F +Y +W S DS YAGT L KK + K+ S
Sbjct: 58 E-----------KLFEF-------FPDYDYFWVSSRDSARKSYAGTMTLYKKGLKVKE-S 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR++ E + +Y + Y PN G E N R WD + +++ +
Sbjct: 99 FPEIGAPDTMDLEGRILTLELDDYYFVQVYTPNAG--GELNRLPLREIWDLKFADYLEEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+HEEID++HPE N ++ GFT ER+ F +L
Sbjct: 157 DKIKPVIATGDFNVAHEEIDLAHPE-------NNHM--------SAGFTDEERRGFTNLL 201
>gi|432942680|ref|XP_004083030.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Oryzias latipes]
Length = 311
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 42/240 (17%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
+ ++ + +K +WN + L VK +++ PDV+ LQE + KD P
Sbjct: 47 TSKDGRSANMKITSWNVDGLRAWVKKG---GLDWVREEAPDVLCLQETK---CAEKDLPA 100
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKV 150
+ ++ P K +W+++D K Y+G A+L K +P KV
Sbjct: 101 E------------------ITSMPEYPHK----YWAVSDDKEGYSGVAMLSKT--EPLKV 136
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
++ + K +++ +GRVI AEF TF+L+ Y PN R+ WD Q ++ +
Sbjct: 137 TYGIGKE--EHDKEGRVITAEFPTFFLVTAYVPNA--SRGLVRLDYRKTWDVDFQAYLTE 192
Query: 211 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTIAERKRF 266
KPL+ CGDLNV+H+EID+ +P+ K G+ P +E + Q GF + R+ +
Sbjct: 193 LDVQKPLVLCGDLNVAHQEIDLKNPK--GNKKNAGFTPEEREGFSQLLAAGFVDSFRELY 250
>gi|335430178|ref|ZP_08557073.1| exodeoxyribonuclease III Xth [Haloplasma contractile SSD-17B]
gi|334888594|gb|EGM26891.1| exodeoxyribonuclease III Xth [Haloplasma contractile SSD-17B]
Length = 251
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 112/236 (47%), Gaps = 61/236 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L +K + EF N + D+ A+QE T
Sbjct: 1 MKLVSWNVNGLRACMKKGFKEFFN---EMNADLFAIQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K E+K F+ Y +W+ AD K Y+GT + K+ +P V + ++ + K
Sbjct: 37 KMQEEQKTF--------DFEGYHEFWNCADKKGYSGTLIYSKQ--KPLNVVYGIDGS--K 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPL 216
Y +GR+I EF+ F+ + Y PN+ + S R R +++ + ++ + S KP+
Sbjct: 85 YNDEGRIITLEFKNFFFVTAYVPNS-----QRSLARLDYRMEFEDDFRAYLKKLDSLKPV 139
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
I CGDLNV+H EID+++P K + GFTI ER+++ ++L E
Sbjct: 140 IMCGDLNVAHREIDLTNP---------------KNNEKNAGFTIEERRKYQSLLDE 180
>gi|422315442|ref|ZP_16396878.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
gi|404592436|gb|EKA94265.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
Length = 253
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKE--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMITVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER +F +L+ I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLESGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|253826925|ref|ZP_04869810.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313142047|ref|ZP_07804240.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|253510331|gb|EES88990.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313131078|gb|EFR48695.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
Length = 252
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 104/231 (45%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFETVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
R ++ F NY+ +W+ A+ K Y+G A+ K K +S + +
Sbjct: 39 ----------QREQATFDFPNYEEYWNSAEKKGYSGVAIFSK----TKPLSVAYDMGIAH 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I AE++ FYL+N Y PN+ K E R +W+ + ++ KP+I C
Sbjct: 85 HDKEGRIICAEYKDFYLVNVYTPNS--KRELERLSYRMEWEDDFRAYLKNLEKTKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ +P K + GFT ER++ +L
Sbjct: 143 GDLNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTQLL 178
>gi|423137872|ref|ZP_17125515.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
gi|371959030|gb|EHO76727.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 253
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VK F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAVKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVAC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER +F +L I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|154497021|ref|ZP_02035717.1| hypothetical protein BACCAP_01314 [Bacteroides capillosus ATCC
29799]
gi|150273420|gb|EDN00548.1| hypothetical protein BACCAP_01314 [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 250
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 57/233 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+K ++WN N L + F D D+ ++QE +M P D P
Sbjct: 1 MKLISWNVNGLRACLGKG---FLESFAALDADIFSIQETKMQPGQAELDLP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
Y+ +W+ A+ K Y+GTA+ + +P V++ +
Sbjct: 49 ---------------------GYKQYWNSAEKKGYSGTAVFTR--LEPLNVTYGIGSE-- 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+++ +GR I EFE FYL+N Y PN + E R +W+ ++ ++L+ S KP+I+
Sbjct: 84 EHDREGRAITLEFEDFYLVNCYVPNA--QRELTRLDWRMEWEDALRAYLLELDSRKPVIY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
CGDLNV+H+EID+ + K + G GFT ER + +L+
Sbjct: 142 CGDLNVAHQEIDLKNA---------------KSNRGNAGFTDEERAKMTQLLE 179
>gi|301096360|ref|XP_002897277.1| exodeoxyribonuclease [Phytophthora infestans T30-4]
gi|262107161|gb|EEY65213.1| exodeoxyribonuclease [Phytophthora infestans T30-4]
Length = 362
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 119/283 (42%), Gaps = 62/283 (21%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWP-EFS 64
+PI E AK A PS +D S ++ K V WN N L +K +
Sbjct: 81 EPISAELQAKIDAF-PSFED------VSRRSADDIDTKIVAWNVNGLRAVLKRDESVHLR 133
Query: 65 NFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQ 124
++ DPD+ L E TK R+E L + P +Q
Sbjct: 134 AYVAQEDPDIFCLSE---------------------TKICRDE---LQKLEDFLPQYEHQ 169
Query: 125 IWWSLADSKYAGTALLVKKCFQPKKV----------SFSLEKTA-LKYEPDGRVILAEFE 173
W YA TA+ K +P V S + K+A + +GR + EF
Sbjct: 170 YWSCAIKKGYASTAIFTKT--KPLSVKDEIVVGDHDSKGVAKSANGGKDQEGRFLALEFP 227
Query: 174 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 232
F+L++TY PN G K E F R +WDK + + + KP+IWCGDLNV+H+EID+
Sbjct: 228 KFWLVHTYVPNAGGKLERLDF-RTTQWDKAMHREMKEMEKTKPVIWCGDLNVAHQEIDIH 286
Query: 233 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
+P K + GFT ER+ FG IL++ +
Sbjct: 287 NP---------------KGNHKSAGFTDEERESFGEILEDGFV 314
>gi|153853826|ref|ZP_01995182.1| hypothetical protein DORLON_01173 [Dorea longicatena DSM 13814]
gi|149753576|gb|EDM63507.1| exodeoxyribonuclease III [Dorea longicatena DSM 13814]
Length = 250
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 108/244 (44%), Gaps = 59/244 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N + + F + D D+ +QE +M A + D P HQ
Sbjct: 1 MKFISWNVNGIRACAQKG---FMDIFNEADADIFCIQESKMQAGQLELDTPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 53 -------------------------YWNYAERKGYSGTAIFTKE--EPLSVSYGL--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GRVI EFE FY + Y PN+ + E R +W+ ++ + KP+I+
Sbjct: 84 EHDKEGRVITLEFEDFYFITVYTPNS--QSELARLDYRMRWEDAFLAYLKKLEEKKPVIF 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--F 276
CGDLNV+H+EID+ +P K + GFT ER +F +L I F
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTNLLNAGFIDTF 186
Query: 277 LCFY 280
FY
Sbjct: 187 RYFY 190
>gi|363889335|ref|ZP_09316698.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
gi|361966758|gb|EHL19645.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
Length = 251
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 110/244 (45%), Gaps = 59/244 (24%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
+KFV+WN N L +R K F + FD D LQE+++ +N EL
Sbjct: 1 MKFVSWNVNGLRAVREKG----FEDIFKNFDADAFCLQEIKL--------QENQIELH-- 46
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
F Y +W+ A+ K Y+GTA+ K +P V + L
Sbjct: 47 -------------------FDGYYEYWNYANKKGYSGTAIYTKH--KPIDVHYGL--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GR+I E+E +Y+ Y PN + E R+KW+ +E+ + KP+I
Sbjct: 84 EHDMEGRLITLEYENYYIATVYTPNA--QPELARLAYRQKWEDDFREYFKKLDEKKPVII 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--F 276
CGD+NV+H+EID+ +P K + PGF+ ER++F L I F
Sbjct: 142 CGDMNVAHQEIDLKNP---------------KNNRKNPGFSDEEREKFTMFLNSGFIDTF 186
Query: 277 LCFY 280
FY
Sbjct: 187 RYFY 190
>gi|345018486|ref|YP_004820839.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033829|gb|AEM79555.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
Length = 257
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 54/243 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L ++ F ++ + D+ +QE ++ HQ
Sbjct: 1 MKLVSWNVNGLRACLQKG---FMDYFKKVNADIFCIQETKLQP---------HQT----- 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L + Y +W+ A+ K Y+GTA+ K ++P V++ + +
Sbjct: 44 ------------DLEELNLEGYYAFWNFAEKKAYSGTAVFTK--YKPLSVNYGI--GIPQ 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI E+E FYL+NTY PN+ + R +W++ + ++L+ S KP+I C
Sbjct: 88 HDNEGRVITLEYEKFYLVNTYTPNS--QRGLTRLSYRMEWEEDFRNYLLKLDSVKPIILC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P +A + N GFT ER++ +L I F
Sbjct: 146 GDLNVAHKEIDIKNP---SANRRNA------------GFTDEEREKMTMLLNSGFIDTFR 190
Query: 278 CFY 280
FY
Sbjct: 191 YFY 193
>gi|302334904|ref|YP_003800111.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
gi|301318744|gb|ADK67231.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
Length = 263
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 104/232 (44%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
LK V+WN N L ++ + P F + D DV A+QE ++ + D P Q
Sbjct: 11 LKLVSWNVNGLRAVMRKD-PSFLQIFSQLDADVFAIQETKLQEGQVELDLPGYFQT---- 65
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
W+ A+ K Y+GTA+ ++ P +V +
Sbjct: 66 --------------------------WNFAERKGYSGTAVFSRE--DPLRVIRQIGSDVA 97
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
E GRV EF TF+ ++ Y PN+ K+ + R WD+R + F+L+ KP++
Sbjct: 98 DDE--GRVCALEFPTFWFVDVYTPNS--KQGLARIEERMGWDERFRLFLLELDAHKPIVT 153
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
CGD NV+H+EID+ +P N E+ PGF+ AER FG +L
Sbjct: 154 CGDFNVAHQEIDLRNPS------------TNHEN---PGFSDAERDSFGRLL 190
>gi|291457988|ref|ZP_06597378.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291419320|gb|EFE93039.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 272
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 109/233 (46%), Gaps = 61/233 (26%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L + + S+F D DV LQE ++ ++
Sbjct: 4 KLISWNVNGLRAVLGKTF--LSDF-HALDADVFCLQETKLQEGQAE-------------- 46
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
LS P + Y W+ A+ K Y+GTAL K+ +P VS+ + ++
Sbjct: 47 ------------LSLPDYHQY---WNYAEKKGYSGTALFSKE--EPLSVSYGI--GIPEH 87
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQCS-GKPLI 217
+ +GRVI AEF Y+L Y PN+ +N QR R +W+ +E++L KP+I
Sbjct: 88 DREGRVISAEFPDCYILTVYVPNS-----QNELQRLSYRMEWEDAFREYILSLEEKKPVI 142
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
+CGDLNV+H+EID+ +P A+ N GFT ER +F +L
Sbjct: 143 YCGDLNVAHQEIDLKNP---ASNHHNA------------GFTDDERAKFSRLL 180
>gi|374997767|ref|YP_004973266.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
gi|357216133|gb|AET70751.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
Length = 250
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 114/245 (46%), Gaps = 61/245 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VKN F +F T + DV +QE ++
Sbjct: 1 MKLISWNVNGLRACVKNG---FLDFFTKENADVFCIQETKI------------------- 38
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+EE++ PF+ Y +W+ A K Y+GTA+ K +P VS+ +
Sbjct: 39 ---QEEQI---------PFQLDGYYSYWNFAQKKGYSGTAIFSKT--EPINVSYGIGME- 83
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+++ +GRVI E+E F+L+ Y PN+ + R KW+ ++ KP+I
Sbjct: 84 -EHDQEGRVITLEYEPFFLVTVYTPNS--QRGLARLDYRMKWEDDFLAYLKTLEKSKPII 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI-- 275
+CGDLNV+H+EID+ +P+ NK++ GFT ER +F +L I
Sbjct: 141 FCGDLNVAHQEIDLKNPK------------TNKKN---AGFTSEERDKFSQVLNHGFIDS 185
Query: 276 FLCFY 280
F FY
Sbjct: 186 FRFFY 190
>gi|299538266|ref|ZP_07051551.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|424736313|ref|ZP_18164773.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
gi|298726468|gb|EFI67058.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|422949916|gb|EKU44289.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
Length = 251
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 57/233 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + + + EF + I D D +QE + A
Sbjct: 1 MKFISWNVNGIRACLGKGFLEFFHQI---DADFFCIQETKCQAG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+++L + Y+ +W+ A K Y+GTA+ K P V + + A
Sbjct: 42 ------QVVL-------SIEGYEQYWNYAQKKGYSGTAIFTKH--TPLSVKYGV--GAED 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIW 218
+ +GR+I E++ FYL+N Y PN + + R +W+ R+ ++ L C KP+++
Sbjct: 85 SQDEGRIITLEYKNFYLVNVYTPNA--QRDLARLPLRLQWEDRLANYLQELNCQ-KPVVY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
CGDLNV+H EID+ + K + G GFT ER +F A+L+
Sbjct: 142 CGDLNVAHTEIDLKNA---------------KSNIGNSGFTYEERAKFSALLE 179
>gi|295397847|ref|ZP_06807910.1| exodeoxyribonuclease III [Aerococcus viridans ATCC 11563]
gi|294973892|gb|EFG49656.1| exodeoxyribonuclease III [Aerococcus viridans ATCC 11563]
Length = 275
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 102/239 (42%), Gaps = 48/239 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P E I PDVIA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGASPRAELSREVLKMIREHQPDVIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSF 152
++ + P +K +W S A YAGT L KK + P+ V+F
Sbjct: 58 DIIE---------------ADVPDYK--VVWVSSVEPARKGYAGTMFLYKKDYTPE-VTF 99
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
+ +GR+I EF FY+ N Y PN G + R+ WD + ++
Sbjct: 100 PQIGAPTTMDYEGRMITLEFTDFYVTNVYTPNAG--SALARLEDRQVWDVQYANYLADLD 157
Query: 213 GK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
K P+I CGD NV+H EID++HP K + GFT ER F +L
Sbjct: 158 AKKPVIACGDFNVAHTEIDLAHP---------------KNNHFSAGFTDEERAGFTNLL 201
>gi|423395948|ref|ZP_17373149.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|423406828|ref|ZP_17383977.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
gi|401653690|gb|EJS71234.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|401660118|gb|EJS77601.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
Length = 252
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ G D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQG-GQIDLN---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 48 ------------------LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVAYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEEKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F +L+E +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRVLEEGFV 184
>gi|229031365|ref|ZP_04187367.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
gi|228729930|gb|EEL80908.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
Length = 252
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQDGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ K+ +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFSKQ--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITVEFEGFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEGFI 184
>gi|421709245|ref|ZP_16148605.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|421722501|ref|ZP_16161760.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
gi|407211802|gb|EKE81667.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|407226285|gb|EKE96051.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
Length = 250
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 113/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L + I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNDGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|228940815|ref|ZP_04103375.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228973735|ref|ZP_04134313.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228980291|ref|ZP_04140602.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|384187741|ref|YP_005573637.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676060|ref|YP_006928431.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452200118|ref|YP_007480199.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779396|gb|EEM27652.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|228785981|gb|EEM33982.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228818829|gb|EEM64894.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|326941450|gb|AEA17346.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175189|gb|AFV19494.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452105511|gb|AGG02451.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 252
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEGFV 184
>gi|406027905|ref|YP_006726737.1| exodeoxyribonuclease III [Lactobacillus buchneri CD034]
gi|405126394|gb|AFS01155.1| exodeoxyribonuclease III [Lactobacillus buchneri CD034]
Length = 256
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 105/232 (45%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK+ +F+ D D +QE +M
Sbjct: 1 MKFISWNVNGLRAAVKH---DFAETFKKLDADFFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L YQ +++ A+ K Y+GTA+ K P V++ +
Sbjct: 39 ---QEGQLEL-------DLPGYQQYFNYAERKGYSGTAIFTKHA--PLDVTYGINSDEFN 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
+E GR I E+ FYL+ +Y PN+G + F R W+K +++ + K P+I C
Sbjct: 87 HE--GRAITLEYPDFYLVTSYVPNSGAGLKRLDF--RMGWNKAFYQYLTELDAKKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+H+EID+ +P+ + GFT ER+ F +LK
Sbjct: 143 GDLNVAHKEIDLKNPQ---------------SNHHNAGFTDEERQDFTNLLK 179
>gi|365903535|ref|ZP_09441358.1| exodeoxyribonuclease III Xth [Lactobacillus malefermentans KCTC
3548]
Length = 254
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 106/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK +F D D +QE +M
Sbjct: 1 MKFISWNVNGLRAVVKK---DFEAEFEALDADFFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L +L P NY +++ A+ K Y+GT + K +P V + + L
Sbjct: 39 ---QENQL----SLDLP---NYHQYYNYAEQKGYSGTGIFTKH--EPLSVHYGINVPELD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+E GR I E+++F+L+ Y PN+G + + F R +WD Q ++L+ + KP+I C
Sbjct: 87 HE--GRTITLEYKSFFLVTCYTPNSGHELKRLDF--RMQWDPAFQSYLLKLNKRKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H EID+ P + GFT ER+ F +L I
Sbjct: 143 GDLNVAHSEIDLKSP---------------TSNHHNAGFTDEERENFTTLLDSGFI 183
>gi|324515683|gb|ADY46281.1| Recombination repair protein 1 [Ascaris suum]
Length = 378
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 114/239 (47%), Gaps = 47/239 (19%)
Query: 8 IEKECSAKK--PAL--SPSKKDGETTETSSEENSKKD----PLKFVTWNANSLLLRVKNN 59
+EK+ S KK P + S K E ET EE+ D PL +TWN L VK
Sbjct: 82 VEKKASPKKKVPRIKKQSSMKVDEQNETEVEESVVDDSANRPLTIITWNVAGLRALVKK- 140
Query: 60 WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPP 119
+ FIT+ D++ LQE + + P + P
Sbjct: 141 --DACRFITSDKADIVLLQETKCA-----EVP------------------------TGFP 169
Query: 120 FKNYQ--IWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 177
K ++ + + + +AG LL K+ +P KV LE + +GR+I+AE++ FYL
Sbjct: 170 VKGFKAFVGENPGKTGHAGVILLSKQ--KPIKVQTKLENVPEELGVEGRLIVAEYDKFYL 227
Query: 178 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPE 235
+N Y PN+G + +R+ WD +++ Q + K +I+ GDLNV+HEEID+++P+
Sbjct: 228 INAYVPNSG--RGLVNLAKRKIWDDFFIDYIKQLDASKAVIYAGDLNVAHEEIDLANPK 284
>gi|418010415|ref|ZP_12650192.1| exodeoxyribonuclease III [Lactobacillus casei Lc-10]
gi|410553904|gb|EKQ27892.1| exodeoxyribonuclease III [Lactobacillus casei Lc-10]
Length = 252
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 103/237 (43%), Gaps = 57/237 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A K D P HQ
Sbjct: 1 MKLISWNVNGLRAVLK---KDFMTIFNELDADWFCLQETKMQAGQVKLDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
CGDLNV+H+EID+ + +K + GFT ER F L I
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSGFI 183
>gi|325970995|ref|YP_004247186.1| exodeoxyribonuclease III Xth [Sphaerochaeta globus str. Buddy]
gi|324026233|gb|ADY12992.1| exodeoxyribonuclease III Xth [Sphaerochaeta globus str. Buddy]
Length = 250
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 106/236 (44%), Gaps = 56/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L K F ++ + D+ LQE ++
Sbjct: 1 MKLVSWNVNGLRAIQKKG---FDEYLKQSNADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E+++ L+ + Y +WS A+ K Y+GTAL K+ +P V +
Sbjct: 39 ---QEDQISLVT-------EGYHTYWSFAEKKGYSGTALFSKQ--EPVSVQRGI---GHP 83
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 219
+ +GR + AEFE FY++ Y PN+ +E R WD+ + +V S KP+I C
Sbjct: 84 LDNEGRTVTAEFEQFYVVCCYTPNS--QEALARLDTRMDWDEAFRSYVCSLASMKPVIIC 141
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+ ID+ HP K + G++I ER +F ++L I
Sbjct: 142 GDLNVAHQSIDLRHP---------------KANERNAGYSIEERNQFTSLLDAGFI 182
>gi|225026087|ref|ZP_03715279.1| hypothetical protein EUBHAL_00328 [Eubacterium hallii DSM 3353]
gi|224956574|gb|EEG37783.1| exodeoxyribonuclease III [Eubacterium hallii DSM 3353]
Length = 250
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 106/233 (45%), Gaps = 59/233 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F +F D D+ +QE ++ AP+
Sbjct: 1 MKLISWNVNGLRACVKKG---FEDFFKEADADIFCVQETKLQEGQIDFAPEG-------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKV--SFSLEKTA 158
Y+ +W+ A+ K Y+GTA+ KK P KV +E+
Sbjct: 50 ---------------------YECYWNYAEKKGYSGTAVFTKK--HPLKVWNGIGMEE-- 84
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLI 217
++ +GRVI EFE F+ + Y PN+ + E R KW+ +E++ + KP+I
Sbjct: 85 --HDQEGRVITLEFEDFFFVTVYTPNS--QSELKRLDYRMKWEDDFREYLQELDKEKPVI 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+HEEID+ +P+ NK++ GFT ER +F +L
Sbjct: 141 MTGDLNVAHEEIDLKNPK------------TNKKN---AGFTQEERNKFTELL 178
>gi|16800960|ref|NP_471228.1| hypothetical protein lin1894 [Listeria innocua Clip11262]
gi|422416297|ref|ZP_16493254.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
gi|16414395|emb|CAC97124.1| lin1894 [Listeria innocua Clip11262]
gi|313623313|gb|EFR93545.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
Length = 251
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 106/243 (43%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 85 HDTEGRVITLEFEDFYMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GF+ ER +F A L I F
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAGFIDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|332024107|gb|EGI64323.1| Recombination repair protein 1 [Acromyrmex echinatior]
Length = 356
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 102/209 (48%), Gaps = 42/209 (20%)
Query: 31 TSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDA 90
T S + KK LK TWN + + +K + ++ IT D D+IALQE +
Sbjct: 93 TKSNQEGKKHNLKICTWNVSGIRAVIKKHGLDY---ITKEDADIIALQETKC-------- 141
Query: 91 PKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK---YAGTALLVKKCFQP 147
D K E KL P + +Y DSK Y G AL K+ +P
Sbjct: 142 --------DKGKMPDEVKL--------PGYHHY-----FLDSKKPGYCGVALFSKE--KP 178
Query: 148 KKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF 207
V + L + ++ +GR+I EF F+++N Y PN G K + +R +W+K ++
Sbjct: 179 ISVKYGLNDST--FDTEGRIITVEFPEFFVINVYVPNAGQKLV--TLPKRLEWNKLFKKH 234
Query: 208 VLQCSGK-PLIWCGDLNVSHEEIDVSHPE 235
+ + K P+I CGD+NV+H+EID+ +P+
Sbjct: 235 IEELDQKKPVIICGDMNVAHQEIDLKNPK 263
>gi|47568231|ref|ZP_00238934.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228986876|ref|ZP_04147003.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|47555059|gb|EAL13407.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228772825|gb|EEM21264.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
Length = 252
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ Q+ + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL------------QDGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 N-----------------LEEYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRVYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEGFI 184
>gi|420528800|ref|ZP_15027190.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|420528961|ref|ZP_15027349.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
gi|393132399|gb|EJC32820.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|393138075|gb|EJC38457.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
Length = 250
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ I FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQNIF-------EFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|428184721|gb|EKX53575.1| apurinic/apyrimidinic endonuclease family member in base excision
repair [Guillardia theta CCMP2712]
Length = 447
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 117/282 (41%), Gaps = 76/282 (26%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K V+WN ++ +K N + PD+I QE ++ + H E ++
Sbjct: 132 KIVSWNVTTIRSLMKKNPELLKKLMEQEQPDLICFQETKLKQ-------EEHDEYEE--- 181
Query: 103 ASREEKLILMRALSSPPFKNYQIWWS--LADSKYAGTALLVKKCFQ-------------- 146
M P + Y+ +S L++ YAGT +LV+
Sbjct: 182 ---------MLKSQFPGDQGYEAHFSSSLSNKSYAGTLVLVRSSKDKATAQKQTKMDSFF 232
Query: 147 -----------------PKKVSFSLE-------KTALKYEPDGRVILAEFETFYLLNTYA 182
P KV+F L + A + +GR I EFE+F+++ TY
Sbjct: 233 KGKDSKSAKKDEETACPPLKVTFGLSTLSKDDGEIAAEVIQEGRTITVEFESFFVVATYV 292
Query: 183 PNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
PN+G K + F R + WD+++ E++ L+ SGKP+IWCGDLNV+H + D+ +
Sbjct: 293 PNSGEKLQRLEF-RTKLWDRKVVEYLKKLEASGKPVIWCGDLNVAHLDNDIWNVGAKHLV 351
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
K G P ER F IL+E + CF L
Sbjct: 352 KSAGTTPE-------------ERDSFSKILEEGYVD-CFRHL 379
>gi|375091411|ref|ZP_09737704.1| exodeoxyribonuclease III (xth) [Helcococcus kunzii ATCC 51366]
gi|374563511|gb|EHR34824.1| exodeoxyribonuclease III (xth) [Helcococcus kunzii ATCC 51366]
Length = 250
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L + F +I DPD+I LQE+++ + D P+ H+
Sbjct: 1 MKLISWNVNGLRAVMNKG---FMEYIEQEDPDIICLQEIKLAKGQLEVDLPQYHE----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK 160
F NY Y+GTA+ K+ +P S+ + +
Sbjct: 53 -------------------FYNYA-----ERRGYSGTAIFTKE--EPLSHSYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E+E FYL+ Y PN+ K R+ W+ + ++L+ + KP+I C
Sbjct: 85 HDKEGRVITLEYEDFYLVTCYTPNS--KRGLLRLDYRQVWEDDFRNYLLKLNKTKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+++P K + GFT ER++F +L I F
Sbjct: 143 GDLNVAHKEIDLANP---------------KSNRRNAGFTDEERQKFTELLDAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|311032922|ref|ZP_07711012.1| exodeoxyribonuclease III [Bacillus sp. m3-13]
Length = 254
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 105/233 (45%), Gaps = 52/233 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK F ++ D D+ +QE ++ QE + D
Sbjct: 1 MKLVSWNVNGIRACVKKG---FMDYFNDMDADIFCIQETKL------------QEGQID- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL-EKTALK 160
L +P + YQ W Y+GTA+ K +P +V + L EK A +
Sbjct: 45 -------------LDTPGY--YQYWNYAIKKGYSGTAVFTK--MKPLQVRYGLDEKKAEE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWC 219
EP+GR++ E+E F+L+N Y PN+ + + R W+ R ++ + K +I C
Sbjct: 88 CEPEGRILTLEYEDFFLVNVYTPNS--QRDLARLPFRLDWEDRFLAYIKMLDQQKSVIVC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
GDLNV+H EID+ +P K + GFT ER + +L E
Sbjct: 146 GDLNVAHAEIDLKNP---------------KSNRNNSGFTEEERGKMTRLLGE 183
>gi|366053865|ref|ZP_09451587.1| exodeoxyribonuclease III [Lactobacillus suebicus KCTC 3549]
Length = 256
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 106/236 (44%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V + F + D D +QE ++ G D
Sbjct: 1 MKFISWNVNGLRAAVTHG---FMDTFNQLDADFFCVQETKLQL-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P NY +W+ AD K Y+GTA+ K K ++ SL +
Sbjct: 45 -------------LKLP--DNYYQYWNYADKKGYSGTAIFTKH----KPLNASLGIGIDE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ +FYL+ Y PN+G + + F R+ W+K +++ Q S K +I+C
Sbjct: 86 FDHEGRVITLEYPSFYLITCYTPNSGQQLKRLDF--RQNWNKAFLDYINQLSAKKDVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+HE ID+ +P + GFT ER F +L+ +
Sbjct: 144 GDLNVAHETIDLKNP---------------SSNHHAAGFTDEERNDFTHLLESNFV 184
>gi|301066021|ref|YP_003788044.1| exonuclease III [Lactobacillus casei str. Zhang]
gi|417980207|ref|ZP_12620888.1| exodeoxyribonuclease III [Lactobacillus casei 12A]
gi|300438428|gb|ADK18194.1| Exonuclease III [Lactobacillus casei str. Zhang]
gi|410525434|gb|EKQ00336.1| exodeoxyribonuclease III [Lactobacillus casei 12A]
Length = 252
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 57/228 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K EF D D LQE +M A + D P HQ
Sbjct: 1 MKLISWNVNGLRAVLK---KEFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
CGDLNV+H+EID+ + +K + GFT ER F
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADF 174
>gi|294787015|ref|ZP_06752269.1| exodeoxyribonuclease III [Parascardovia denticolens F0305]
gi|315226658|ref|ZP_07868446.1| exodeoxyribonuclease [Parascardovia denticolens DSM 10105 = JCM
12538]
gi|294485848|gb|EFG33482.1| exodeoxyribonuclease III [Parascardovia denticolens F0305]
gi|315120790|gb|EFT83922.1| exodeoxyribonuclease [Parascardovia denticolens DSM 10105 = JCM
12538]
Length = 277
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 105/242 (43%), Gaps = 52/242 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF-------ITTFDPDVIALQEVRMPAAGSKDAPKNH 94
+KFVTWN +SL + + E S I P V A+QE ++PAAG P
Sbjct: 1 MKFVTWNIDSLNAALTGD-SERSRLSRQVLHDIAACSPQVFAIQETKLPAAG----PSKK 55
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVK-KCFQPKK 149
Q KAS E F Y I W A YAGT L + + Q
Sbjct: 56 Q------KASLESI-----------FPGYWIAWRSSQEPARKGYAGTMCLYRPEGGQEVS 98
Query: 150 VSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 209
+ + +GR++ EF FYL + Y PN+G + + R+ WD R + ++
Sbjct: 99 PLYPQIGAPEPMDSEGRILTLEFPGFYLTDVYTPNSG--DGLRRLEERQVWDDRYRSYLQ 156
Query: 210 QCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
KP+I CGD NV+HEEID++HP N+ GFT ER +FG
Sbjct: 157 DLDQVKPVIACGDFNVAHEEIDLAHPA------------SNRR---SAGFTDEERDKFGQ 201
Query: 269 IL 270
+L
Sbjct: 202 LL 203
>gi|254302413|ref|ZP_04969771.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322605|gb|EDK87855.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 253
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER +F +L I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|19703399|ref|NP_602961.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296328758|ref|ZP_06871272.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|19713467|gb|AAL94260.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296154093|gb|EFG94897.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 253
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER +F +L I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|406897912|gb|EKD41704.1| hypothetical protein ACD_73C00569G0001 [uncultured bacterium]
Length = 250
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 105/235 (44%), Gaps = 52/235 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + + F +F+ + D+I LQE K H E D T
Sbjct: 1 MKMISWNVNGIRSILGKG---FLDFVGSSCADIICLQET-----------KAHPEQVDLT 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
L+ P + W S Y+GTA+ K QP ++ L ++
Sbjct: 47 -------------LNDYP---HHYWNSAIKKGYSGTAIFCK--VQP--IASQLGIGIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 220
+ +GRVI EF +YL+N Y PN + E R KWD ++ + S KP+I+CG
Sbjct: 87 DNEGRVITLEFSDYYLVNVYTPNA--QRELTRLDYRMKWDADFLNYLKKLESHKPVIFCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
DLNV+H+EID+++P K + G GFT ER F IL+ +
Sbjct: 145 DLNVAHKEIDLANP---------------KTNQGNAGFTPQERDGFSKILESGFV 184
>gi|399516033|ref|ZP_10757657.1| Exodeoxyribonuclease III [Leuconostoc pseudomesenteroides 4882]
gi|398649127|emb|CCJ65684.1| Exodeoxyribonuclease III [Leuconostoc pseudomesenteroides 4882]
Length = 273
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 108/240 (45%), Gaps = 53/240 (22%)
Query: 42 LKFVTWNANSLLLRVKN-------NWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKN 93
+K ++WN +S+ V++ W +N I PDV A+QE ++ A G +K
Sbjct: 1 MKLISWNIDSINAAVEHKSARGEMTWSVLNN-IAEATPDVFAIQETKLKATGLTKKQANA 59
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWW--SLADSKYAGTALLVKKCFQPKKVS 151
EL F +Y ++ SLA S Y+GT +L ++ +P V
Sbjct: 60 IAEL----------------------FPDYHVFVNPSLARSGYSGTMVLSRQ--EPLSVD 95
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GRVI EF FY+ Y PN+G E R WD + + ++
Sbjct: 96 FPKIDAPGDMDMEGRVITLEFANFYVSTVYTPNSG--SELARLDDRGLWDDQYRHYISSL 153
Query: 212 SGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
K P+I+ GD+NV+HEEID+ +P K + GFT ER++F A+L
Sbjct: 154 DQKKPVIFSGDMNVAHEEIDLKNP---------------KTNRHSAGFTDQEREKFTALL 198
>gi|42518122|ref|NP_964052.1| exodeoxyribonuclease [Lactobacillus johnsonii NCC 533]
gi|385824990|ref|YP_005861332.1| exodeoxyribonuclease III [Lactobacillus johnsonii DPC 6026]
gi|41582406|gb|AAS08018.1| exodeoxyribonuclease [Lactobacillus johnsonii NCC 533]
gi|329666434|gb|AEB92382.1| exodeoxyribonuclease III [Lactobacillus johnsonii DPC 6026]
Length = 275
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 107/242 (44%), Gaps = 52/242 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ P N I D D+IA+QE ++ + G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSPRAQLTRSVLNTIKEKDADIIAIQETKLRSTG---PTKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADS----KYAGTALLVKKCFQPKKVS 151
E+ L M F NY W ++ YAGT L K P+
Sbjct: 58 EV-----------LAEM-------FPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTK 99
Query: 152 FSLEK-TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
++ + YE GR++ EF+ +Y+ Y PN+G E + R+ WD++ E++ +
Sbjct: 100 PTIGAPDTMDYE--GRILTLEFDNYYVTQVYTPNSG--NELKRLEDRQIWDEKYTEYLQK 155
Query: 211 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
KP+I GD NV+H ID+ HPE + GFT ER+ F +
Sbjct: 156 LDKSKPVIASGDYNVAHTPIDLKHPE---------------NNHHNAGFTDEERQGFDKL 200
Query: 270 LK 271
LK
Sbjct: 201 LK 202
>gi|420429441|ref|ZP_14928474.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
gi|393044771|gb|EJB45763.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
Length = 250
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 59/244 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIW 218
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F VL+ KP+I
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKVLELK-KPVIV 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--F 276
CGDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTF 186
Query: 277 LCFY 280
FY
Sbjct: 187 RYFY 190
>gi|260495692|ref|ZP_05815815.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
gi|260196757|gb|EEW94281.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
Length = 253
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVAC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER +F +L I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|260589662|ref|ZP_05855575.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|331083093|ref|ZP_08332210.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
gi|260539902|gb|EEX20471.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|330405095|gb|EGG84632.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
Length = 251
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 101/231 (43%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK F+ F D D +QE ++ P+
Sbjct: 1 MKFISWNVNGLRACVKKG---FTEFFEQTDADFFCIQETKLQEGQIDFEPEG-------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V + + +
Sbjct: 50 ---------------------YFCYWNYAVKKGYSGTAIFAKK--EPLSVQYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E+E FY++ Y PN+ + E R +W+ + ++ Q KP+I C
Sbjct: 85 HDQEGRVITLEYENFYMVTVYTPNS--QSELARLSYRMQWEDDFRAYLQQLDEKKPVIMC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ +P K + GFT ER++F L
Sbjct: 143 GDLNVAHQEIDLKNP---------------KTNRHNAGFTDEEREKFTTFL 178
>gi|452992928|emb|CCQ95587.1| apurinic/apyrimidinic endonuclease [Clostridium ultunense Esp]
Length = 250
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V+ F N+ D D+ +QE ++ QE + D
Sbjct: 1 MKLVSWNVNGLRACVRKG---FLNYFEEVDADIFCVQETKL------------QEGQID- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L+ P + Y W+ A+ K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LNLPGYHQY---WNYAEKKGYSGTAVFTKD--KPLDVKYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI EFE FYL+N Y PN+ + E R W+ + ++ + S KP+I C
Sbjct: 85 HDKEGRVITLEFEDFYLVNVYTPNS--QRELTRLDYRMTWEDEFRNYLKELDSIKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P N+ + GFT ER + +L I F
Sbjct: 143 GDLNVAHKEIDLKNP------------STNRRN---AGFTDEERGKMTELLGTGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420520352|ref|ZP_15018787.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|425433141|ref|ZP_18813679.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
gi|393124748|gb|EJC25215.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|410714293|gb|EKQ71771.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
Length = 250
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420414387|ref|ZP_14913507.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
gi|393026721|gb|EJB27818.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
Length = 250
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|336401875|ref|ZP_08582631.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
gi|336160344|gb|EGN63396.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
Length = 253
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER +F +L I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420420653|ref|ZP_14919737.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
gi|393035452|gb|EJB36496.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
Length = 250
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|345884610|ref|ZP_08836014.1| exodeoxyribonuclease [Prevotella sp. C561]
gi|345042603|gb|EGW46699.1| exodeoxyribonuclease [Prevotella sp. C561]
Length = 249
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +F + D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVG---KDFEQQFKDLNADFFCLQETKMQ-AGQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
LS P +++Y W+ AD K Y+GTA+ K +P V++ ++ +
Sbjct: 45 -------------LSFPGYESY---WNYADKKGYSGTAIYTKH--KPLNVTYGIDID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E + FYL+ Y PN+ ++ R KW++ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEMDDFYLITVYTPNS--QDGLRRLDYRMKWEEDFQAYLHRLDAIKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+H+EID+ +P K + GFT ER++ +L I
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNHKNAGFTDEEREKMTQLLSNGFI 183
>gi|336420229|ref|ZP_08600467.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
gi|336161634|gb|EGN64634.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
Length = 253
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMIWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER +F +L I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420478325|ref|ZP_14976978.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
gi|393097099|gb|EJB97693.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
Length = 250
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|289766441|ref|ZP_06525819.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
gi|289717996|gb|EFD82008.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
Length = 253
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMIWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER +F +L I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|268318601|ref|YP_003292257.1| exodeoxyribonuclease [Lactobacillus johnsonii FI9785]
gi|262396976|emb|CAX65990.1| exodeoxyribonuclease [Lactobacillus johnsonii FI9785]
Length = 275
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 107/242 (44%), Gaps = 52/242 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ P N I D D+IA+QE ++ + G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSPRAQLTRSVLNTIKEKDADIIAIQETKLRSTG---PTKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADS----KYAGTALLVKKCFQPKKVS 151
E+ L M F NY W ++ YAGT L K P+
Sbjct: 58 EV-----------LAEM-------FPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTK 99
Query: 152 FSLEK-TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
++ + YE GR++ EF+ +Y+ Y PN+G E + R+ WD++ E++ +
Sbjct: 100 PAIGAPDTMDYE--GRILTLEFDNYYVTQVYTPNSG--NELKRLEDRQIWDEKYTEYLQK 155
Query: 211 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
KP+I GD NV+H ID+ HPE + GFT ER+ F +
Sbjct: 156 LDKSKPVIASGDYNVAHTPIDLKHPE---------------NNHHNAGFTDEERQDFDKL 200
Query: 270 LK 271
LK
Sbjct: 201 LK 202
>gi|150402181|ref|YP_001329475.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
gi|150033211|gb|ABR65324.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
Length = 249
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 109/236 (46%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +KN F +F+ PD++ +QE ++ + +L D
Sbjct: 1 MKMISWNVNGIRACLKNG---FMDFLERESPDIMCIQETKVQSG--------QVQLGLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A+ K Y+GTA+ K +P V ++ T +
Sbjct: 49 --------------------GYFQYWNYAEKKGYSGTAIFTK--IKPNNVILGIKNT--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRV+ EF+ +YL+N Y PN+ + + R+KWD+ ++ KP+I+C
Sbjct: 85 HDGEGRVLTLEFDKYYLINVYTPNS--QRGLTRLEYRQKWDQDFLNYIKTLENEKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + GFT ER F I+ I
Sbjct: 143 GDLNVAHKEIDLKNP---------------KNNVKNAGFTPEERIGFDNIVDSGFI 183
>gi|47213945|emb|CAF94476.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 123/262 (46%), Gaps = 57/262 (21%)
Query: 17 PALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIA 76
P L D T+ + N+K +WN + L VK + +++ +PDV+
Sbjct: 45 PILYEDPPDKMTSRDGRDANTK-----ITSWNVDGLRAWVKK---KGLDWVREENPDVLC 96
Query: 77 LQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--Y 134
LQE + K P + + ++ P+K +W+ +D K Y
Sbjct: 97 LQETK---CAEKSLPAD------------------ITSMPEYPYK----YWAGSDDKEGY 131
Query: 135 AGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSF 194
+G A+L K +P KV++ + K +++ +GRVI AEF F+L+ Y PN+G
Sbjct: 132 SGVAMLCKT--EPVKVTYGIGKE--EHDKEGRVITAEFPGFFLVTAYVPNSG--RGLVRL 185
Query: 195 QRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW 253
R+ WD + ++ + KP++ CGDLNV+H+EID+ +P+ NK++
Sbjct: 186 DYRKTWDADFRTYLSELDVQKPVVLCGDLNVAHQEIDLKNPK------------GNKKN- 232
Query: 254 GQPGFTIAERKRFGAILKEYLI 275
GFT ER+ FG +L+ +
Sbjct: 233 --AGFTAEEREGFGQLLEAGFV 252
>gi|237743089|ref|ZP_04573570.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
gi|229433385|gb|EEO43597.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
Length = 253
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMIWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER +F +L I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|381184157|ref|ZP_09892815.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
gi|380315948|gb|EIA19409.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
Length = 251
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK F ++ D D+ LQE ++
Sbjct: 1 MKFISWNVNGLRAAVKKG---FMDYFNEADADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L Y +W+ A K Y+GTA+ KK +P +V + L + +
Sbjct: 39 ---QEGQIEL-------DLNGYYDYWNYAVKKGYSGTAIFTKK--EPLRVFYGL--SVAE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE FY + Y PN+ + E R +++ +V KP+I+C
Sbjct: 85 HDQEGRVITLEFEQFYFITVYTPNS--QPELARLAYRMSFEEAFLNYVKNLDQEKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + PGF+ ER +F +L+ + F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNPGFSDEERGKFTTVLESGFVDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 HFY 190
>gi|288803025|ref|ZP_06408461.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
gi|288334542|gb|EFC72981.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
Length = 249
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 103/236 (43%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V EF D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRACVG---KEFEQQFKDLDADFFCLQETKMQA-GQLDIS---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y+ +W+ AD K Y+GTA+ K +P V++ + +
Sbjct: 47 ------------------FLGYESYWNYADKKGYSGTAIFTKH--KPLSVTYGINID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E + FYL+ Y PN+ ++ R KW+ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEMDDFYLVTVYTPNS--QDGLRRLDYRMKWEDDFQAYLHKLDEKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+H+EID+ +P K + GFT ER++ +L I
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNRKNAGFTDEEREKMTQLLSNGFI 183
>gi|168209710|ref|ZP_02635335.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|168217871|ref|ZP_02643496.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
gi|170712212|gb|EDT24394.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|182380111|gb|EDT77590.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
Length = 250
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYHQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + GFT ER +F +L I
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSGFI 183
>gi|422932904|ref|ZP_16965829.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
gi|339891952|gb|EGQ80860.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
Length = 253
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER +F +L I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|18310156|ref|NP_562090.1| exodeoxyribonuclease III [Clostridium perfringens str. 13]
gi|110802988|ref|YP_698514.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
gi|18144835|dbj|BAB80880.1| 3'-exo-deoxyribonuclease [Clostridium perfringens str. 13]
gi|110683489|gb|ABG86859.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
Length = 250
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYHQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + GFT ER +F +L I
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSGFI 183
>gi|423477848|ref|ZP_17454563.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
gi|402428773|gb|EJV60865.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
Length = 252
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQDGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFSKK--KPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+++C
Sbjct: 86 HDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEGFI 184
>gi|420469649|ref|ZP_14968365.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
gi|393083481|gb|EJB84186.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
Length = 250
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 59/244 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIW 218
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F VL+ KP+I
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKVLELK-KPVIV 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--F 276
CGDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTF 186
Query: 277 LCFY 280
FY
Sbjct: 187 RYFY 190
>gi|420484801|ref|ZP_14983422.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|420515183|ref|ZP_15013650.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
gi|393098636|gb|EJB99222.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|393155626|gb|EJC55898.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
Length = 250
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420473317|ref|ZP_14971995.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|420525338|ref|ZP_15023743.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
gi|393090445|gb|EJB91078.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|393130144|gb|EJC30574.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
Length = 250
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|182626631|ref|ZP_02954375.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|422345838|ref|ZP_16426752.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
gi|177908025|gb|EDT70604.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|373227503|gb|EHP49817.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
Length = 250
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYHQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + GFT ER +F +L I
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSGFI 183
>gi|220930682|ref|YP_002507591.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
gi|220001010|gb|ACL77611.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
Length = 253
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 53/235 (22%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K V+WN N L + F +F D D+ +QE ++ +
Sbjct: 3 KLVSWNVNGLRACIGKG---FWDFFKEVDSDIFCIQETKLQEG----------------Q 43
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
E++L + Y+ +W+ A K Y+GTA+ K K VS S ++
Sbjct: 44 VELEQEL-----------EGYEQYWNYAVKKGYSGTAIFTK----IKPVSSSCGIGIEEH 88
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI EF+ ++L+N Y PN+ K E + R KW+ + ++ Q KP+I CG
Sbjct: 89 DNEGRVITLEFDQYFLVNVYTPNS--KRELERLEYRMKWEDDFRIYLKQLEETKPVIICG 146
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
D+NV+H+EID+ +P NK GFT+ ER++F +L++ +
Sbjct: 147 DMNVAHKEIDIKNPR------------SNKR---SAGFTMEEREKFSELLEQGFV 186
>gi|421893824|ref|ZP_16324317.1| exodeoxyribonuclease III [Pediococcus pentosaceus IE-3]
gi|385273309|emb|CCG89689.1| exodeoxyribonuclease III [Pediococcus pentosaceus IE-3]
Length = 251
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 105/231 (45%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK+ F + D D+ +QE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKHG---FLDVFKELDADIFCIQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ KK +P V + L K
Sbjct: 45 -------------LELPHYYQY---WNYAEKKGYSGTAIFTKK--KPLTVRYGL--GIEK 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ + + + R WD + ++ Q + KP+I+C
Sbjct: 85 HDQEGRVITLEFEKFYVITCYTPNS--QPKLKRLEYRMAWDDAFRAYIDQLNQHKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ + +K + GFT ER +F +L
Sbjct: 143 GDLNVAHQEIDLKN---------------DKTNHKNAGFTDEERNKFTQLL 178
>gi|329120913|ref|ZP_08249545.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
gi|327471372|gb|EGF16823.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
Length = 254
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 53/231 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK+++WN N L +K F + + D LQE ++ HQ
Sbjct: 4 LKYISWNVNGLRACIKKG---FLDSFKNLNADCFCLQETKLQP---------HQ------ 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P + YQ W S Y+GTAL K +P VS+ + ++
Sbjct: 46 -----------IELDIPGY--YQYWNSAIKKGYSGTALFTK--IKPISVSYGM--NIEEH 88
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GR+I AEF+ +L+ Y PN+ + + + R KW+ + ++L+ + KP+I CG
Sbjct: 89 DQEGRLITAEFKNHFLVVCYTPNS--QRQLARLEYRMKWENDFKNYLLKLTESKPVILCG 146
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
DLNV+H+EID+++P + GFT ERK+F +L+
Sbjct: 147 DLNVAHKEIDLANPS---------------SNHKNAGFTDDERKKFSTLLE 182
>gi|423100921|ref|ZP_17088626.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
gi|370792563|gb|EHN60427.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
Length = 256
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 105/243 (43%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F + D D+ LQE ++ +
Sbjct: 6 MKLISWNVNGLRAAVKKG---FLEYFEEVDADIFCLQETKLQEGQIE------------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 50 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPE 89
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 90 HDTEGRVITLEFEDFYMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLC 147
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GF+ ER +F A L I F
Sbjct: 148 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAGFIDSFR 192
Query: 278 CFY 280
FY
Sbjct: 193 YFY 195
>gi|168205412|ref|ZP_02631417.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
gi|170663003|gb|EDT15686.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
Length = 250
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYHQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + GFT ER +F +L I
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSGFI 183
>gi|431795205|ref|YP_007222110.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430785431|gb|AGA70714.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 250
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 109/245 (44%), Gaps = 61/245 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + + F +F D+ LQE ++ A
Sbjct: 1 MKLISWNVNGIRACLNKG---FMDFFEKEQADIFCLQETKIQA----------------- 40
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
PF+ Y +W+ A K Y+GTA+ K+ +P KV++ + K
Sbjct: 41 --------------DQIPFQLEGYHQYWNYAQKKGYSGTAVFTKQ--EPLKVTYGIGKE- 83
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLI 217
+++ +GRVI EFE FYL+ Y PN+ + + R W++ F+ KP+I
Sbjct: 84 -EHDQEGRVITLEFEGFYLVTVYTPNS--QRGLARLEYRMTWEEEFLSFLKNLEQAKPVI 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI-- 275
+CGDLN++H EID+ +P K + GF+ ER +FG +LK+ I
Sbjct: 141 FCGDLNMAHTEIDLKNP---------------KTNRKNAGFSDEERAKFGELLKKGFIDT 185
Query: 276 FLCFY 280
F FY
Sbjct: 186 FRYFY 190
>gi|365130338|ref|ZP_09341407.1| exodeoxyribonuclease III (xth) [Subdoligranulum sp. 4_3_54A2FAA]
gi|363620249|gb|EHL71547.1| exodeoxyribonuclease III (xth) [Subdoligranulum sp. 4_3_54A2FAA]
Length = 251
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 53/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + F++ F DV+ LQE +M ++ +P +
Sbjct: 1 MKLISWNVNGFRAILGKG---FADIFEGFGADVVCLQETKMQPGQAEFSPPGY------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+Q W+S Y+GTA+ + +P V + + K +
Sbjct: 51 ---------------------HQYWYSAEKKGYSGTAVFTR--MEPLSVRYGIGKEEHSH 87
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 220
E GR I EFE F+L+N Y PN+ + E R +W+ ++ ++ + KP+++CG
Sbjct: 88 E--GRAITLEFEQFFLVNVYTPNS--QNELARLPYRMQWEDDLRAYLCALDTEKPVVYCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+H EID+ +P K++ GF+ ER++ +L
Sbjct: 144 DLNVAHREIDLKNP---------------KQNIHSAGFSYEERQKMTDLL 178
>gi|320354727|ref|YP_004196066.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
gi|320123229|gb|ADW18775.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
Length = 481
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 111/220 (50%), Gaps = 42/220 (19%)
Query: 18 ALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIAL 77
++P KK + +D K ++WN N L KN F + + D D++AL
Sbjct: 211 GVTPRKK-----QQGGTVRQGRDERKLISWNVNGLRAVAKNG---FLDVLHELDADILAL 262
Query: 78 QEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAG 136
QE+ K H + DD +R +S YQ +W A K YAG
Sbjct: 263 QEI-----------KAHPDQLDDQ----------LRNVSG-----YQSFWHSAKKKGYAG 296
Query: 137 TALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR 196
TA+ K P +V + +E+ +++ +GRV+ E+ FYL+NTY+PN + E
Sbjct: 297 TAVFSK--IPPLRVLYGMEQP--QFDDEGRVLTLEYPDFYLINTYSPNA--QPELKRLAF 350
Query: 197 RRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPE 235
++++++ + ++ + S K ++ CGDLNV+H+EID+++P+
Sbjct: 351 KQEFNRTLLAYMDRLRSEKTVVLCGDLNVAHKEIDLANPK 390
>gi|269123555|ref|YP_003306132.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
gi|268314881|gb|ACZ01255.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
Length = 251
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 57/242 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K+++WN N L +K F ++ P++I LQE++M
Sbjct: 3 KYISWNVNGLRACIKKG---FLDYFNEQKPNIIGLQEIKMS------------------- 40
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
E +L L + Y +++ A+ K Y+GTA+ +P VS+ + ++
Sbjct: 41 ---EGQLDL-------ELEGYYTYYNYAEKKGYSGTAIFTD--VEPISVSYGI--GIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AEFE +Y + Y PN+ K E R W+ + ++ + KP+I CG
Sbjct: 87 DKEGRVITAEFEDYYFVTVYTPNS--KNELERLDYRMIWEDEFRSYLKKLEEKKPVIVCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FLC 278
DLNV+H+EID+ +P K + GFTI ER +F +++ I F
Sbjct: 145 DLNVAHKEIDLKNP---------------KSNTRSAGFTIEERNKFTELIENGFIDTFRY 189
Query: 279 FY 280
FY
Sbjct: 190 FY 191
>gi|134045625|ref|YP_001097111.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
gi|132663250|gb|ABO34896.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
Length = 249
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 110/231 (47%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +KN F +F+ PDV+ +QE ++ + +L D
Sbjct: 1 MKMLSWNVNGIRACLKNG---FMDFLKRESPDVMCIQETKVQSG--------QVQLGLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A+ K Y+GTA+ K +P +V + ++ + +
Sbjct: 49 --------------------GYFQYWNYAERKGYSGTAVFTK--IKPNEVIYGIKNS--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
+ +GRVI +F+ +YL+N Y PN+ + + R+KWD+ +V K P+I+C
Sbjct: 85 HNGEGRVITLKFDEYYLVNVYTPNS--QRGLTRLKYRQKWDQDFLNYVKTLENKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ +P K + GFT ERK F I+
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNVKNAGFTPEERKGFDNIV 178
>gi|423401446|ref|ZP_17378619.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
gi|401654436|gb|EJS71979.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
Length = 252
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKLQDGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+++C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEGFI 184
>gi|331085596|ref|ZP_08334680.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330407483|gb|EGG86985.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 250
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V+ F +F D D+ +QE +M
Sbjct: 1 MKFISWNVNGIRACVQKG---FLDFFKEADADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L + Y +W+ A+ K Y+GTA+ K+ +P V++ + +
Sbjct: 39 ---QEGQLKL-------ELEGYHQFWNYAERKGYSGTAIFTKQ--EPLSVAYGIGME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE FY + Y PN+ + E R +W+ +++ + K P+I+C
Sbjct: 85 HDKEGRVITLEFEEFYFVTVYTPNS--QNELARLDYRMQWETEFLKYLKKLEAKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GFT ER +F +L I F
Sbjct: 143 GDLNVAHREIDLKNP---------------KTNQKNAGFTDEERGKFTELLSAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|340617816|ref|YP_004736269.1| exodeoxyribonuclease III [Zobellia galactanivorans]
gi|339732613|emb|CAZ95881.1| Exodeoxyribonuclease III [Zobellia galactanivorans]
Length = 256
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 117/244 (47%), Gaps = 53/244 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK + E +++FD DV +QE T
Sbjct: 1 MKLVSWNVNGIRASVKKGFEEV---VSSFDADVFCVQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA ++ + +S +Y+++ + A+ K Y+GTA+L KK K ++F+++ +
Sbjct: 37 KAQDDQVKEALAGIS-----DYELFCNSAEKKGYSGTAILSKK----KPLTFTVDMGKEE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+ E+E F+L+N Y PN+G + + R WDK ++ + S KPLI
Sbjct: 88 HDTEGRITHVEYEEFHLVNVYVPNSGSGLKRLDY--RSIWDKDFTAYLKKLSESKPLIIT 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-PGFTIAERKRFGAILKEYLIFLC 278
GD NV+H D+++P K ++ + GFT E F AILKE +
Sbjct: 146 GDFNVAHTANDLANP---------------KSNYNKTSGFTQVEIDGFDAILKELNLVDS 190
Query: 279 FYEL 282
F L
Sbjct: 191 FRTL 194
>gi|423469951|ref|ZP_17446695.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
gi|423558712|ref|ZP_17535014.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|401190966|gb|EJQ98002.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|402437203|gb|EJV69227.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
Length = 252
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ +K +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTRK--EPIAVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTNILEEGFV 184
>gi|331702430|ref|YP_004399389.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
gi|329129773|gb|AEB74326.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
Length = 256
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK+ +F+ D D +QE +M
Sbjct: 1 MKFISWNVNGLRAAVKH---DFAETFQQLDADFFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L YQ +++ A+ K Y+GTA+ K P V++ +
Sbjct: 39 ---QEGQLEL-------DLPGYQQYFNYAERKGYSGTAIFTKHA--PMHVTYGINSDEFD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
+E GR I E+ FYL+ +Y PN+G + F R W+K +++ + K P+I C
Sbjct: 87 HE--GRAITLEYPDFYLVTSYVPNSGAGLKRLDF--RMGWNKAFYQYLTELDAKKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+H+EI++ +P+ + GFT ER+ F +LK
Sbjct: 143 GDLNVAHKEIELKNPQ---------------SNHHNAGFTDEERQDFTKLLK 179
>gi|374338532|ref|YP_005095247.1| Exodeoxyribonuclease III [Streptococcus macedonicus ACA-DC 198]
gi|372284647|emb|CCF02936.1| Exodeoxyribonuclease III [Streptococcus macedonicus ACA-DC 198]
Length = 276
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 49/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + +N + + T + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSNSARAIMSRAVIDTLVTENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F Y++ W A YAGT L K P+ +S
Sbjct: 58 QILQDY------------------FPEYEVSWRSSVEPARKGYAGTMFLYKSSLTPRSIS 99
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ +++ +
Sbjct: 100 YPEIGAPDNMDSEGRIITLEFDKFFVTQVYTPNAG--DGLKRLAERQIWDEKYADYLAEL 157
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 158 DQVKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTNLL 202
>gi|256545331|ref|ZP_05472695.1| exodeoxyribonuclease III [Anaerococcus vaginalis ATCC 51170]
gi|256399012|gb|EEU12625.1| exodeoxyribonuclease III [Anaerococcus vaginalis ATCC 51170]
Length = 275
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 105/245 (42%), Gaps = 50/245 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL L +N S I + D DVI LQE ++P G K HQ
Sbjct: 1 MKFISWNIDSLNAALTSDSNRAVMSRDVLKTIISEDADVICLQETKLPRTG---PSKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ ++ F +Y W A YAG L KK Q K ++
Sbjct: 58 KILEEY------------------FPSYDYAWVSSQEPARKSYAGCLTLYKKNLQTK-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + + + R+I EFE FYL Y PN G N R+ WD++ ++
Sbjct: 99 FPVLDAPDTMDQEARIITLEFEKFYLTQVYTPNAG--NGLNRLGLRQIWDEKFANYLENL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
K +I CGD NV+H+EID+ HPE N E GFT ER F +L
Sbjct: 157 DKNKAVIACGDFNVAHKEIDLKHPE------------NNHE---SAGFTDEERNGFTNLL 201
Query: 271 KEYLI 275
+ +
Sbjct: 202 NKGFV 206
>gi|229157316|ref|ZP_04285394.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
gi|228626043|gb|EEK82792.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
Length = 252
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ Q+ + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL------------QDGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 N-----------------LEEYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+++C
Sbjct: 86 HDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRVYIKRLDEKKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEGFI 184
>gi|313144803|ref|ZP_07806996.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|313129834|gb|EFR47451.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|396078071|dbj|BAM31447.1| exodeoxyribonuclease [Helicobacter cinaedi ATCC BAA-847]
Length = 251
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D+ +QE +M KD
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFNEVNADIFCIQESKMQ--------------KDQG 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
S F+ Y +W+ A+ K Y+G +L K +P +V++ + +
Sbjct: 44 DFS---------------FQGYSEYWNSAEKKGYSGVVVLSK--IKPLQVTYDMGIS--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I AE+E FYL+N Y PN K E + R +W+ + FV + KP++ C
Sbjct: 85 HDKEGRIITAEYERFYLVNVYTPNA--KRELERLEYRMEWEDDFRAFVKKLKKHKPVVIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER + +L+ I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKMSELLESGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 HFY 190
>gi|340354875|ref|ZP_08677571.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
gi|339622889|gb|EGQ27400.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
Length = 238
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 23/159 (14%)
Query: 119 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 177
PF Y+ +W+ A+ K Y+GTA+ K+ +P V + L E +GRV+ EFE F+L
Sbjct: 32 PFDGYEHYWNYAEKKGYSGTAVFTKQ--RPLSVQYGL--NGQDSEAEGRVLTLEFEKFFL 87
Query: 178 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEF 236
+N Y PN+ + + R KW+ + + + KP+I+CGDLNV+HEEID+ +
Sbjct: 88 VNCYTPNS--QRDLARLSYRLKWEDEMLAHLTELDAQKPVIYCGDLNVAHEEIDICNV-- 143
Query: 237 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
K ++G GFT ER + +L I
Sbjct: 144 -------------KSNYGNSGFTKEERAKMTRLLDSGFI 169
>gi|327313318|ref|YP_004328755.1| exodeoxyribonuclease III [Prevotella denticola F0289]
gi|326944960|gb|AEA20845.1| exodeoxyribonuclease III [Prevotella denticola F0289]
Length = 249
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 106/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V EF D D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVG---KEFEQQFKDLDADFFCLQETKM-QAGQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
LS P +++Y W+ AD K Y+GTA+ K +P V++ + +
Sbjct: 45 -------------LSFPGYESY---WNYADKKGYSGTAIFTKH--KPLNVTYGI--GIDE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E + FYL+ Y PN+ ++ R KW+ Q ++ + KP++ C
Sbjct: 85 HDHEGRVITLEMDDFYLVTVYTPNS--QDGLRRLDYRMKWEDDFQAYLHKLDEKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+H+EID+ +P K + GFT ER++ +L I
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNRKNAGFTDEEREKMTQLLGNGFI 183
>gi|420488041|ref|ZP_14986644.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|420521916|ref|ZP_15020345.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
gi|393101431|gb|EJC02003.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|393126486|gb|EJC26937.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
Length = 250
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420424301|ref|ZP_14923369.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
gi|393039589|gb|EJB40616.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
Length = 250
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|291543155|emb|CBL16265.1| exodeoxyribonuclease III [Ruminococcus bromii L2-63]
Length = 252
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 106/235 (45%), Gaps = 55/235 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F NF D D+ LQE ++
Sbjct: 3 KLISWNVNGLRACVTKG---FENFFKDVDADIFCLQETKL-------------------- 39
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E ++ L+ + Y +W AD K Y+GTA+ K+ +P V + + ++
Sbjct: 40 --QEGQIDLL-------LEGYHQYWCYADKKGYSGTAMFTKE--EPLNVCYGI--GIDEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AEF+ +++ Y PN+ + E R KW+ + ++ + KP+I CG
Sbjct: 87 DHEGRVITAEFDNCFVVTCYTPNS--QSELKRLDYRMKWEDDFKAYLKKLEEKKPVIMCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
DLNV+H+EID+ +P K + GFT ER + A+L + I
Sbjct: 145 DLNVAHKEIDLKNP---------------KTNRKNAGFTDEERSKMTALLDDGFI 184
>gi|420415952|ref|ZP_14915065.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
gi|393031857|gb|EJB32928.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
Length = 250
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|383754456|ref|YP_005433359.1| putative exodeoxyribonuclease III [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381366508|dbj|BAL83336.1| putative exodeoxyribonuclease III [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 250
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 104/235 (44%), Gaps = 53/235 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L +K F D DV LQE +M
Sbjct: 1 MKFISWNVNGLRACLKKG---FMESFCKLDADVFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ E+ IL P +K Y W S Y+GTA+ + +P V++ L ++
Sbjct: 39 ---QPEQAIL----DLPGYKQY--WNSAEKKGYSGTAVFSR--IEPLHVTYGL--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI EF +L+ Y PN+ K E R +W+ + ++++ KP+I CG
Sbjct: 86 DHEGRVITLEFPEMFLVTVYTPNS--KRELERLAYRMEWEDAFRAYLMKLDEQKPVIVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
DLNV+H+EID+ +P K + GFT ER +FG +L I
Sbjct: 144 DLNVAHQEIDLKNP---------------KTNHHNAGFTDEERGKFGELLDAGFI 183
>gi|363893404|ref|ZP_09320502.1| exodeoxyribonuclease [Eubacteriaceae bacterium ACC19a]
gi|361963708|gb|EHL16774.1| exodeoxyribonuclease [Eubacteriaceae bacterium ACC19a]
Length = 251
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 57/237 (24%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
+KFV+WN N L +R K F + FD D LQE+++ +N EL
Sbjct: 1 MKFVSWNVNGLRAVREKG----FEDIFKNFDADAFCLQEIKL--------QENQIELH-- 46
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
F Y +W+ A+ K Y+GTA+ K +P V + L
Sbjct: 47 -------------------FDGYYEYWNYANKKGYSGTAIYTKH--KPIDVHYGL--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GR+I E+E +Y+ Y PN + E R+KW+ +E+ + KP+I
Sbjct: 84 EHDMEGRLITLEYENYYIATVYTPNA--QPELARLAYRQKWEDDFREYFKKLDEKKPVII 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
CGD+NV+H+EID+ +P K + PGF+ ER++F L I
Sbjct: 142 CGDMNVAHQEIDLKNP---------------KNNRKNPGFSDEEREKFTIFLNAGFI 183
>gi|421715822|ref|ZP_16155136.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
gi|407214330|gb|EKE84179.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
Length = 250
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|423452962|ref|ZP_17429815.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
gi|401139521|gb|EJQ47083.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
Length = 252
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNTDIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ +K +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTRK--EPIAVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTNILEEGFV 184
>gi|299143331|ref|ZP_07036411.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298517816|gb|EFI41555.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 250
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 114/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L +K + + N I + DV ALQE+++ + G D
Sbjct: 1 MKLVSWNVNGLRAVIKKGFVDSFNEI---NADVFALQEIKL-SEGQLDFE---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y+++++ A K Y+GTA+ + +P VS+ + +
Sbjct: 47 ------------------LEGYKMYYNYAQRKGYSGTAIFTR--IEPISVSYGIGME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI AEFE FY + Y PN+ K + R W+ + ++ + KP++ C
Sbjct: 85 HDTEGRVITAEFEKFYFVTCYTPNS--KRGLERLEYRMVWEDVFRNYLNKLRETKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+++P N ++ GFT ER +F +LK I F
Sbjct: 143 GDLNVAHEEIDLANP------------ATNHKN---AGFTNEERSKFTELLKSGYIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|227889124|ref|ZP_04006929.1| exodeoxyribonuclease III [Lactobacillus johnsonii ATCC 33200]
gi|227850353|gb|EEJ60439.1| exodeoxyribonuclease III [Lactobacillus johnsonii ATCC 33200]
Length = 275
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 106/242 (43%), Gaps = 52/242 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ P N I D D+IA+QE ++ + G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSPRAQLTRSVLNTIKEKDADIIAIQETKLRSTG---PTKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADS----KYAGTALLVKKCFQPKKVS 151
E+ + F NY W ++ YAGT L K P+
Sbjct: 58 EV------------------LAEIFPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTK 99
Query: 152 FSLEK-TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
++ + YE GR++ EF+ +Y+ Y PN+G E + R+ WD++ E++ +
Sbjct: 100 PAIGAPDTMDYE--GRILTLEFDNYYVTQVYTPNSG--NELKRLKDRQIWDEKYTEYLQK 155
Query: 211 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
KP+I GD NV+H ID+ HPE + GFT ER+ F +
Sbjct: 156 LDKSKPVIASGDYNVAHTPIDLKHPE---------------NNHHNAGFTDEERQGFDKL 200
Query: 270 LK 271
LK
Sbjct: 201 LK 202
>gi|386760994|ref|YP_006234629.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
gi|385146010|dbj|BAM11518.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
Length = 251
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D+ +QE +M KD
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFNEVNADIFCIQESKMQ--------------KDQG 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
S F+ Y +W+ A+ K Y+G +L K +P +V++ + +
Sbjct: 44 DFS---------------FQGYSEYWNSAEKKGYSGVVVLSK--IKPLQVAYDMGIS--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I AE+E FYL+N Y PN K E + R +W+ + FV + KP++ C
Sbjct: 85 HDKEGRIITAEYERFYLVNVYTPNA--KRELERLEYRMEWEDDFRAFVKKLKKHKPVVIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER + +L+ I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKMSELLESGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 HFY 190
>gi|420504982|ref|ZP_15003506.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
gi|393154128|gb|EJC54413.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
Length = 250
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|423367719|ref|ZP_17345151.1| exodeoxyribonuclease [Bacillus cereus VD142]
gi|401083372|gb|EJP91630.1| exodeoxyribonuclease [Bacillus cereus VD142]
Length = 252
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+E+D+ +P K + PGF+ ER++F +L+E I
Sbjct: 144 GDLNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEEGFI 184
>gi|420476560|ref|ZP_14975223.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
gi|393094985|gb|EJB95590.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
Length = 250
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M QE
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM-----------QQEQ---- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 43 --------------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420439551|ref|ZP_14938514.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
gi|393053870|gb|EJB54812.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
Length = 250
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|284047996|ref|YP_003398335.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952217|gb|ADB47020.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 250
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 61/239 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +TWN N L + F++F+T D++ +QE +M
Sbjct: 1 MKLITWNVNGLRACMNKG---FADFMTAAGADIVCVQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
R +S F Y +W+ A K Y+GTA+ K +P V++ L + +
Sbjct: 39 ----------QREQASFDFPGYHEYWNSAVKKGYSGTAVFSKT--EPLSVTYGLGQE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG----KPL 216
++ +GRVI AE+ FYL+N Y PN+ + + R +W+ Q++ C+G KP+
Sbjct: 85 HDQEGRVITAEYPDFYLVNVYTPNS--QRGLTRLEYRMQWEDVFQDY---CAGLARKKPV 139
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
I CGDLNV+ + ID+ +P+ N ++ GFT ER +F L +
Sbjct: 140 IVCGDLNVAAQPIDLKNPD------------SNHKN---AGFTDEERAKFQQFLDHGFV 183
>gi|385219782|ref|YP_005781257.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
gi|317014940|gb|ADU82376.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
Length = 250
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420410840|ref|ZP_14909976.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
gi|393026053|gb|EJB27153.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
Length = 250
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420491838|ref|ZP_14990414.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|420525605|ref|ZP_15024008.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
gi|393108533|gb|EJC09067.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|393133626|gb|EJC34042.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
Length = 250
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|189460159|ref|ZP_03008944.1| hypothetical protein BACCOP_00795 [Bacteroides coprocola DSM 17136]
gi|189433149|gb|EDV02134.1| exodeoxyribonuclease III [Bacteroides coprocola DSM 17136]
Length = 253
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + E N D D LQE +M
Sbjct: 3 MKLISWNVNGLRACCDKGFREIFN---ELDADFFCLQETKM------------------- 40
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F+ Y +W+ A+ K Y+GTA+ + QP V++ L +
Sbjct: 41 ---QEGQLDL-------AFEGYTSYWNYAEKKGYSGTAIFTRH--QPLSVTYGLGID--E 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E E FYL+ Y PN+ ++ R W++ ++++LQ KP++ C
Sbjct: 87 HDHEGRVITLEMENFYLVTVYTPNS--QDGLKRLDYRMTWEEDFRKYLLQLDRQKPVLVC 144
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P+ ++N GFT ER++F +L I F
Sbjct: 145 GDLNVAHKEIDLKNPK---TNRMNA------------GFTDQEREKFQLLLDAGFIDTFR 189
Query: 278 CFY 280
FY
Sbjct: 190 HFY 192
>gi|375086371|ref|ZP_09732783.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
gi|374565408|gb|EHR36677.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
Length = 251
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 57/233 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+KFV+WN N L + F T D D+ LQE +M P D P+
Sbjct: 1 MKFVSWNVNGLRACMNKG---FMETFQTLDADIFCLQETKMQPHQLELDLPR-------- 49
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
Y+ +W+ A+ K Y+GTA+ K +P VS+ L
Sbjct: 50 ----------------------YKQYWNSAEKKGYSGTAIFTK--VEPLNVSYGL--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GRVI EF+ F+++ Y PN+ K E R +W+ + ++++ + KP++
Sbjct: 84 EHDHEGRVITLEFDKFFMVCVYTPNS--KRELERLDYRMQWEDAFRNYLVELNKQKPVVM 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
CGDLNV+H+EID+ +P K + GFT ER + +L+
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KTNRRSAGFTDEERSKMTELLQ 179
>gi|420452902|ref|ZP_14951743.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
gi|393066715|gb|EJB67534.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
Length = 250
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420444585|ref|ZP_14943505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
gi|393058222|gb|EJB59115.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
Length = 250
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|325660677|ref|ZP_08149307.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
gi|325473038|gb|EGC76246.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
Length = 250
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V+ F +F D D+ +QE +M
Sbjct: 1 MKFISWNVNGIRACVQKG---FLDFFKEADADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L + Y +W+ A+ K Y+GTA+ K+ +P V++ + +
Sbjct: 39 ---QEGQLKL-------ELEGYHQFWNYAERKGYSGTAIFTKQ--EPLSVAYGIGME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE FY + Y PN+ + E R +W+ +++ + K P+I+C
Sbjct: 85 HDKEGRVITLEFEEFYFVTVYTPNS--QNELARLDYRMQWETEFLKYLKKLEAKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GFT ER +F +L I F
Sbjct: 143 GDLNVAHREIDLKNP---------------KTNRKNAGFTDEERGKFTELLSAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|255655350|ref|ZP_05400759.1| putative exodeoxyribonuclease [Clostridium difficile QCD-23m63]
gi|296451338|ref|ZP_06893076.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
gi|296259754|gb|EFH06611.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
Length = 250
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++F++WN N + F +F D DV LQE ++ +
Sbjct: 1 MRFISWNVNGIRACAGKG---FLDFFKEVDADVFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ KK +P KV + + +
Sbjct: 45 -------------LDLPGYFQY---WNYAERKGYSGTAIFTKK--EPLKVMYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE FY + Y PN+ + E + R +W+ +++ + KP+I C
Sbjct: 85 HDKEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+H+EID+ +P K + GFT ER++F +L I
Sbjct: 143 GDMNVAHKEIDLKNP---------------KNNMKNAGFTKEEREKFSKLLDSGFI 183
>gi|239631265|ref|ZP_04674296.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|239525730|gb|EEQ64731.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
Length = 252
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 42/193 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K EF D D LQE +M A + D P HQ
Sbjct: 1 MKLISWNVNGLRAVLK---KEFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 219 CGDLNVSHEEIDV 231
CGDLNV+H+EID+
Sbjct: 142 CGDLNVAHQEIDL 154
>gi|410918464|ref|XP_003972705.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Takifugu
rubripes]
Length = 314
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 124/262 (47%), Gaps = 57/262 (21%)
Query: 17 PALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIA 76
P L D T++ + N +K +WN + L VK + +++ +PDV+
Sbjct: 39 PILYEDPPDKMTSKDGRDAN-----MKITSWNVDGLRAWVKK---KGLDWVREENPDVLC 90
Query: 77 LQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--Y 134
LQE + K P + + ++ PFK +W+ +D K Y
Sbjct: 91 LQETK---CAEKSLPAD------------------ITSMPEYPFK----YWAGSDDKEGY 125
Query: 135 AGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSF 194
+G A+L K +P KV++ + K +++ +GRVI AEF +F+L+ Y PN+G
Sbjct: 126 SGVAMLSKT--EPIKVTYGIGKE--EHDKEGRVITAEFSSFFLVTVYVPNSG--RGLVRL 179
Query: 195 QRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW 253
R+ WD + ++ + KP++ CGDLNV+H+EID+ +P+ NK++
Sbjct: 180 DYRKTWDVDFRTYLSELDIQKPVVLCGDLNVAHQEIDLKNPK------------GNKKN- 226
Query: 254 GQPGFTIAERKRFGAILKEYLI 275
GFT ER+ F +L+ +
Sbjct: 227 --AGFTAEEREGFSQLLEAGFV 246
>gi|407014279|gb|EKE28316.1| hypothetical protein ACD_3C00079G0002 [uncultured bacterium (gcode
4)]
Length = 255
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 113/242 (46%), Gaps = 51/242 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + +K F +I PD+IA+QEV+ +D
Sbjct: 1 MKFISWNVNWIRASIKK---WFIEYIQDEKPDIIAMQEVKAT--------------EDQF 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
A E +L+ + FKN+ Y+ TA+ K+ +P +V++ L ++
Sbjct: 44 PARLEMELMWYSIYWNAAFKNW----------YSWTAIFTKE--KPLEVTYWL--WIWEH 89
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ + R+I EFE FY + Y PN+ K E N + R+ WD +++ + KP++ C
Sbjct: 90 DNEWRIITLEFEKFYFITVYTPNS--KRELNRLEYRQLWDSLFLDYMRRLEVNKPVVVCW 147
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FLC 278
DLNV+H+EID+ +P+ PN+ GFT ER+ F L I F
Sbjct: 148 DLNVAHKEIDLKNPK------------PNR---WNAGFTDEEREGFQKFLNAGFIDTFRY 192
Query: 279 FY 280
FY
Sbjct: 193 FY 194
>gi|15646134|ref|NP_208316.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|410024766|ref|YP_006894019.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|410502530|ref|YP_006937057.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
gi|410683049|ref|YP_006935451.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|419417169|ref|ZP_13957646.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|2314703|gb|AAD08563.1| exodeoxyribonuclease (lexA) [Helicobacter pylori 26695]
gi|384373631|gb|EIE29102.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|409894690|gb|AFV42748.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|409896423|gb|AFV44345.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|409898081|gb|AFV45935.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
Length = 250
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420431269|ref|ZP_14930290.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
gi|393044260|gb|EJB45254.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
Length = 250
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420447816|ref|ZP_14946702.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|420476276|ref|ZP_14974943.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
gi|393061877|gb|EJB62737.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|393090183|gb|EJB90817.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
Length = 250
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|329895423|ref|ZP_08271004.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
gi|328922306|gb|EGG29652.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
Length = 256
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 102/196 (52%), Gaps = 36/196 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ V+WN N + K ++ F +F PDV+ LQE T
Sbjct: 1 MRLVSWNVNGIRAVTKKDF--FESF-ERMAPDVLCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA ++ L + L Y+++ + A+ K Y+GTA++ + +P +S + + +
Sbjct: 37 KAQDDQVLEALTELDPA----YKVFSNSAEKKGYSGTAIITR--VEP--ISVTADMGMPE 88
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRV+ AEFETFYL+ Y PN+G E R+ WDK +++ KP++ C
Sbjct: 89 HDTEGRVLCAEFETFYLVTVYTPNSG--SELKRLDYRQSWDKDFADYLKTLEQTKPVVVC 146
Query: 220 GDLNVSHEEIDVSHPE 235
GDLNV+H++ID++ P+
Sbjct: 147 GDLNVAHQDIDLARPK 162
>gi|283796572|ref|ZP_06345725.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|291075985|gb|EFE13349.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|295092540|emb|CBK78647.1| exodeoxyribonuclease III [Clostridium cf. saccharolyticum K10]
gi|295115277|emb|CBL36124.1| exodeoxyribonuclease III [butyrate-producing bacterium SM4/1]
Length = 251
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 105/235 (44%), Gaps = 55/235 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F + D D+ +QE ++ A G D
Sbjct: 3 KMISWNVNGLRACVGKG---FLDVFRKLDADIFCIQESKLQA-GQID------------- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P + Y WS AD K Y+GTAL K+ +P V + L A +
Sbjct: 46 ------------LDIPGYYQY---WSYADKKGYSGTALFSKE--EPISVVYGLGIDAHDH 88
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
E GRVI AE+E +Y+L Y PN+ + E R +W+ ++ + KP+I+CG
Sbjct: 89 E--GRVITAEYEDYYVLTCYTPNS--QNELARLPYRMEWEDAFLAYLKKLEEKKPVIFCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
DLNV+H EID+ +P N+++ GFT ER +F A+L I
Sbjct: 145 DLNVAHREIDLKNPR------------TNRKN---AGFTDEERGKFSALLDAGFI 184
>gi|418007606|ref|ZP_12647486.1| exodeoxyribonuclease III [Lactobacillus casei UW4]
gi|410548624|gb|EKQ22818.1| exodeoxyribonuclease III [Lactobacillus casei UW4]
Length = 252
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 103/237 (43%), Gaps = 57/237 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A + D P HQ
Sbjct: 1 MKLISWNVNGLRAVLK---KDFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
CGDLNV+H+EID+ + +K + GFT ER F L I
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSGFI 183
>gi|418001612|ref|ZP_12641751.1| exodeoxyribonuclease III [Lactobacillus casei UCD174]
gi|410546206|gb|EKQ20470.1| exodeoxyribonuclease III [Lactobacillus casei UCD174]
Length = 252
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 57/228 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A + D P HQ
Sbjct: 1 MKLISWNVNGLRAVLK---KDFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
CGDLNV+H+EID+ + +K + GFT ER F
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADF 174
>gi|386756397|ref|YP_006229614.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
gi|384562655|gb|AFI03121.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
Length = 250
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEMEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|422413323|ref|ZP_16490282.1| exodeoxyribonuclease III, partial [Listeria innocua FSL S4-378]
gi|313618350|gb|EFR90386.1| exodeoxyribonuclease III [Listeria innocua FSL S4-378]
Length = 253
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 105/242 (43%), Gaps = 57/242 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 4 KLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE-------------- 46
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P +K+Y W+ A K Y+GTA+ K +P V + L ++
Sbjct: 47 ------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPEH 87
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI EFE FY++ Y PN+ + E R ++ I E+V KP++ CG
Sbjct: 88 DTEGRVITLEFEDFYMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCG 145
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FLC 278
DLNV+HEEID+ +P K + GF+ ER +F A L I F
Sbjct: 146 DLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAGFIDSFRY 190
Query: 279 FY 280
FY
Sbjct: 191 FY 192
>gi|333984917|ref|YP_004514127.1| exodeoxyribonuclease III [Methylomonas methanica MC09]
gi|333808958|gb|AEG01628.1| exodeoxyribonuclease III Xth [Methylomonas methanica MC09]
Length = 254
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 37/196 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + + F + + FD D I LQE T
Sbjct: 1 MKIISWNVNGIRAVQEKG---FRDSLQHFDADCILLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA ++ + +AL +Y ++ + A+ K Y+G ALL + P +V + +
Sbjct: 37 KAQDDQ---VHKALEG--IDHYHVYCNSAERKGYSGVALLTRN--PPLRVVHDM--GIAE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRV++AEFE+FYLLN Y PN+G + R+ WD + ++ Q KP+I C
Sbjct: 88 HDQEGRVLVAEFESFYLLNVYVPNSG--DGLARLDYRQTWDAALLAYLQQLQNQKPVIAC 145
Query: 220 GDLNVSHEEIDVSHPE 235
GD NV+H+ ID++ P+
Sbjct: 146 GDFNVAHQAIDIARPK 161
>gi|427393372|ref|ZP_18887150.1| exodeoxyribonuclease III (xth) [Alloiococcus otitis ATCC 51267]
gi|425730590|gb|EKU93424.1| exodeoxyribonuclease III (xth) [Alloiococcus otitis ATCC 51267]
Length = 275
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 106/240 (44%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL L +N + S I + PDV+A+QE ++ A G K H
Sbjct: 1 MKFISWNIDSLNAALTSDSNRAQMSRQVLETIQDYQPDVLAIQETKLSAKGPT---KKH- 56
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
A R E+ F +Y W A YAG + KK P+ V+
Sbjct: 57 -------AKRLEEW----------FPDYDYAWVSSVEPARKGYAGNMVFYKKDLSPE-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ FY Y PN G + R++WDK+ ++
Sbjct: 99 YPRIDAPEPMDSEGRMITLEFDNFYFTQVYTPNAG--SQLARLGERQEWDKQYANYLTSL 156
Query: 212 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
+ KP+I GD NV+H+EID++HPE + GFT ER+ F +L
Sbjct: 157 DAAKPVIAAGDFNVAHQEIDLAHPE---------------NNHHSAGFTDEEREGFSHLL 201
>gi|417986286|ref|ZP_12626858.1| exodeoxyribonuclease III [Lactobacillus casei 32G]
gi|410526479|gb|EKQ01366.1| exodeoxyribonuclease III [Lactobacillus casei 32G]
Length = 252
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 57/228 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A + D P HQ
Sbjct: 1 MKLISWNVNGLRAVLK---KDFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
CGDLNV+H+EID+ + +K + GFT ER F
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADF 174
>gi|300726843|ref|ZP_07060273.1| exodeoxyribonuclease III [Prevotella bryantii B14]
gi|299775956|gb|EFI72536.1| exodeoxyribonuclease III [Prevotella bryantii B14]
Length = 250
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 105/231 (45%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + E +FD D +QE +M
Sbjct: 1 MKLISWNVNGLRACVTKGFKET---FKSFDADFFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F Y+ +W+ AD K Y+GTA+ K +P V++ ++
Sbjct: 39 ---QEGQLDL-------QFDGYESFWNYADKKGYSGTAIYAKT--KPLNVTYGIDIDDHN 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+E GRVI E++ F+L+ Y PN+ + E R W+K Q ++ + KP+I C
Sbjct: 87 HE--GRVITLEYDNFFLVTVYTPNS--QNELKRLNYRMIWEKDFQTYLHKLDKRKPIIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GD+NV+H+EID+ +P K + GFT ER++ +L
Sbjct: 143 GDMNVAHQEIDIKNP---------------KTNHKSAGFTDEEREKMTQLL 178
>gi|373851837|ref|ZP_09594637.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391230369|ref|ZP_10266575.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
gi|372474066|gb|EHP34076.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391220030|gb|EIP98450.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
Length = 251
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 53/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + ++ ++I DVI LQE +K P + Q +
Sbjct: 1 MKLVSWNVNGVRAVLQKG---LLDYIAASGADVICLQE-------TKCQPGDVQHVVWPA 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y+ WW+ A K Y+GTA+ + +P VS L
Sbjct: 51 --------------------GYRAWWNAAQKKGYSGTAIFSR--VEPVAVSCGLGLP--D 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRV+ AEF FYL+N Y PN + E RR+W+ ++ K P++ C
Sbjct: 87 HDNEGRVLTAEFADFYLVNVYVPNA--QHELVRLPYRRRWNADFLSYLRSLEKKKPVVVC 144
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+H+EID++ P KE+ G GF+ ER+ F +L+ +
Sbjct: 145 GDMNVAHQEIDLARP---------------KENVGNAGFSNEEREDFSTMLRAGFV 185
>gi|116494506|ref|YP_806240.1| exonuclease III [Lactobacillus casei ATCC 334]
gi|191637944|ref|YP_001987110.1| exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227535523|ref|ZP_03965572.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|385819687|ref|YP_005856074.1| Exodeoxyribonuclease III [Lactobacillus casei LC2W]
gi|385822845|ref|YP_005859187.1| Exodeoxyribonuclease III [Lactobacillus casei BD-II]
gi|417983078|ref|ZP_12623720.1| exodeoxyribonuclease III [Lactobacillus casei 21/1]
gi|417989182|ref|ZP_12629696.1| exodeoxyribonuclease III [Lactobacillus casei A2-362]
gi|417992549|ref|ZP_12632904.1| exodeoxyribonuclease III [Lactobacillus casei CRF28]
gi|417995780|ref|ZP_12636067.1| exodeoxyribonuclease III [Lactobacillus casei M36]
gi|417998717|ref|ZP_12638932.1| exodeoxyribonuclease III [Lactobacillus casei T71499]
gi|418004708|ref|ZP_12644721.1| exodeoxyribonuclease III [Lactobacillus casei UW1]
gi|418013374|ref|ZP_12653018.1| exodeoxyribonuclease III [Lactobacillus casei Lpc-37]
gi|116104656|gb|ABJ69798.1| Exonuclease III [Lactobacillus casei ATCC 334]
gi|190712246|emb|CAQ66252.1| Exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227186845|gb|EEI66912.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|327382014|gb|AEA53490.1| Exodeoxyribonuclease III [Lactobacillus casei LC2W]
gi|327385172|gb|AEA56646.1| Exodeoxyribonuclease III [Lactobacillus casei BD-II]
gi|410528859|gb|EKQ03697.1| exodeoxyribonuclease III [Lactobacillus casei 21/1]
gi|410533128|gb|EKQ07815.1| exodeoxyribonuclease III [Lactobacillus casei CRF28]
gi|410536484|gb|EKQ11077.1| exodeoxyribonuclease III [Lactobacillus casei M36]
gi|410539278|gb|EKQ13814.1| exodeoxyribonuclease III [Lactobacillus casei A2-362]
gi|410540321|gb|EKQ14836.1| exodeoxyribonuclease III [Lactobacillus casei T71499]
gi|410548944|gb|EKQ23126.1| exodeoxyribonuclease III [Lactobacillus casei UW1]
gi|410555900|gb|EKQ29831.1| exodeoxyribonuclease III [Lactobacillus casei Lpc-37]
Length = 252
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 103/237 (43%), Gaps = 57/237 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A + D P HQ
Sbjct: 1 MKLISWNVNGLRAVLK---KDFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
CGDLNV+H+EID+ + +K + GFT ER F L I
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSGFI 183
>gi|295704797|ref|YP_003597872.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
gi|294802456|gb|ADF39522.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
Length = 253
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 111/231 (48%), Gaps = 56/231 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ + ++ +T DV +QE ++ QE + D
Sbjct: 1 MKLISWNVNGIRACVRKGFLDYFQEVTA---DVFCIQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ + Y +W+ A K Y+GTA+ K+ +P VSF ++K +
Sbjct: 46 Q-----------------LEGYYQYWNYAVKKGYSGTAVFTKQ--KPLSVSFGVDK---E 83
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
E +GR+I EFE Y++N Y PN+ K + + R +W+ + ++ + S K +I C
Sbjct: 84 LEDEGRIITLEFEQCYVVNVYTPNS--KRDLARLEERLQWEDDLLVYLKKLNSRKAVILC 141
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H EID+ +P+ PN+ G GFTI ER + +L
Sbjct: 142 GDLNVAHAEIDLRNPK------------PNR---GNSGFTIEERGKMTTLL 177
>gi|420449595|ref|ZP_14948464.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
gi|393062395|gb|EJB63250.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
Length = 250
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420425904|ref|ZP_14924964.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
gi|393040802|gb|EJB41820.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
Length = 250
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRIITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|291528729|emb|CBK94315.1| exodeoxyribonuclease III [Eubacterium rectale M104/1]
Length = 251
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 42/197 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+KF++WN N L V+ F +F + D D +QE ++ A D P HQ
Sbjct: 1 MKFISWNVNGLRACVQKG---FLDFFNSIDADFFCIQESKLQAGQIDLDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K +P VS+ +
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFAKN--EPLSVSYGI--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GRVI E++ FYL+ Y PN+ + E R +W+ +E++ K P++
Sbjct: 84 EHDKEGRVITLEYDNFYLVTCYTPNS--QNELKRLPYRMQWEDDFREYLKTLDAKKPVVL 141
Query: 219 CGDLNVSHEEIDVSHPE 235
CGDLNV+H EID+ +P+
Sbjct: 142 CGDLNVAHNEIDLKNPK 158
>gi|291522762|emb|CBK81055.1| exodeoxyribonuclease III [Coprococcus catus GD/7]
Length = 258
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 96/201 (47%), Gaps = 40/201 (19%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ + D +K ++WN N L V F + D D+ LQE ++ A +
Sbjct: 2 DEEDDKVKLISWNVNGLRAVVGKG---FVDIFNELDADIFCLQETKLQAGQIE------- 51
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
L P ++ Y W+ A+ K Y+GTA+ + +P V + +
Sbjct: 52 -------------------LDLPGYEQY---WNYAERKGYSGTAVFTR--IKPLSVRYGM 87
Query: 155 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SG 213
+ +++ +GRVI E+++FYL+N Y PN+ K+ R KW+ + ++
Sbjct: 88 D--IAEHDTEGRVITLEYDSFYLVNVYTPNS--KDGLARLPYRMKWEDDFRNYLKTLEQT 143
Query: 214 KPLIWCGDLNVSHEEIDVSHP 234
KP++ CGDLNV+HEEID+ +P
Sbjct: 144 KPVVMCGDLNVAHEEIDLKNP 164
>gi|373858337|ref|ZP_09601074.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
gi|372451804|gb|EHP25278.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
Length = 252
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 103/211 (48%), Gaps = 42/211 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + V F ++ D DV +QE ++ + ELKD +
Sbjct: 1 MKLVSWNVNGIRACVGKG---FLDYFYQIDADVFCIQETKLQEG------QISLELKDHS 51
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ +W+ A K Y+GTA+ KK +P V + + T +
Sbjct: 52 Q-----------------------YWNYAVKKGYSGTAIFSKK--KPLSVQYGIGTT--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR I EFE FYL+N Y PN+ + + R W+ ++EF+ + + KP+I C
Sbjct: 85 HDSEGRAITLEFEEFYLVNIYTPNS--QRDLARLNYRVAWEDYLREFLQELDTKKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNK 250
GD+NV+H EID+ +P+ + K +G+ P +
Sbjct: 143 GDMNVAHHEIDLKNPK--SNMKNSGFTPEER 171
>gi|308185296|ref|YP_003929429.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|420454456|ref|ZP_14953289.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
gi|308061216|gb|ADO03112.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|393067777|gb|EJB68584.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
Length = 250
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|259503288|ref|ZP_05746190.1| exodeoxyribonuclease [Lactobacillus antri DSM 16041]
gi|259168743|gb|EEW53238.1| exodeoxyribonuclease [Lactobacillus antri DSM 16041]
Length = 275
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 106/244 (43%), Gaps = 58/244 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQEVRMPAAGSKDAP-KNH 94
+KF++WN +S+ + + +PD +A+QE ++ SK+ P K H
Sbjct: 1 MKFISWNIDSINAALTGTSTRAGETRAVLKKLAALEPDAVAIQETKL----SKNGPTKKH 56
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 150
++ D F YQ+ W A YAGT L ++ +QP +
Sbjct: 57 LQVLADL------------------FPGYQVAWRSSVEPARKGYAGTMYLYREQYQPT-I 97
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEF 207
S+ + +GR+I EF F+L Y PN+G N +R R +WD +++
Sbjct: 98 SYPQIGAPEPMDSEGRIITLEFPDFFLTEVYTPNSG-----NGLKRLAEREQWDDCYRDY 152
Query: 208 VLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
+ + KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 153 LHELDQQKPVIASGDFNVAHEEIDLAHP---------------ANNHHSAGFTDEERTHF 197
Query: 267 GAIL 270
G +L
Sbjct: 198 GKLL 201
>gi|374315128|ref|YP_005061556.1| exodeoxyribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
gi|359350772|gb|AEV28546.1| exodeoxyribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
Length = 271
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 56/232 (24%)
Query: 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
P+K ++WN N L K F +++ D D+ LQE ++
Sbjct: 22 PVKLISWNVNGLRACQKKG---FEEYLSRADADIFCLQETKL------------------ 60
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+E I + LS Y +WS A+ K Y+GTAL K QP VS +
Sbjct: 61 -----QEDQIALDKLS------YHTFWSFAEKKGYSGTALFSK--IQPISVS---REIGH 104
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+ +GR + AEFE ++++ Y PN+ +E+ + R WD +++V K P++
Sbjct: 105 PLDSEGRTVTAEFEDYFVICCYTPNS--QEKLARIELRMDWDAAFRKYVSDLDKKKPVLI 162
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
CGDLNV+H ID+ +P K++ G++I ER+ F +L
Sbjct: 163 CGDLNVAHNPIDLKNP---------------KQNEQNAGYSIQERQGFSTLL 199
>gi|229162671|ref|ZP_04290628.1| Exodeoxyribonuclease [Bacillus cereus R309803]
gi|228620553|gb|EEK77422.1| Exodeoxyribonuclease [Bacillus cereus R309803]
Length = 252
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ Q+ + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL------------QDGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFEDFHMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F +L+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCVLEEGFI 184
>gi|238922913|ref|YP_002936426.1| exodeoxyribonuclease [Eubacterium rectale ATCC 33656]
gi|238874585|gb|ACR74292.1| exodeoxyribonuclease [Eubacterium rectale ATCC 33656]
Length = 251
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 42/197 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+KF++WN N L V+ F +F + D D +QE ++ A D P HQ
Sbjct: 1 MKFISWNVNGLRACVQKG---FLDFFNSIDADFFCIQESKLQAGQIDLDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K +P VS+ +
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFAKN--EPLSVSYGI--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GRVI E++ FYL+ Y PN+ + E R +W+ +E++ K P++
Sbjct: 84 EHDKEGRVITLEYDNFYLVTCYTPNS--QNELKRLPYRMQWEDDFREYLKTLDAKKPVVL 141
Query: 219 CGDLNVSHEEIDVSHPE 235
CGDLNV+H EID+ +P+
Sbjct: 142 CGDLNVAHNEIDLKNPK 158
>gi|15612480|ref|NP_224133.1| exodeoxyribonuclease III [Helicobacter pylori J99]
gi|420464550|ref|ZP_14963321.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
gi|4156036|gb|AAD06994.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori J99]
gi|393077779|gb|EJB78526.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
Length = 250
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|421526611|ref|ZP_15973218.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
gi|402257168|gb|EJU07643.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
Length = 253
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 106/231 (45%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKLS------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
E +L L K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 40 ----EGQLDL-------DLKGYHQYWNYAEKKGYSGTAIFTKE--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K P++ C
Sbjct: 85 HDKEGRVITLEFEKFYMITVYTPNS--KDELQRLDYRMVWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ +P K + GFT ER +F +L
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELL 178
>gi|187735459|ref|YP_001877571.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
gi|187425511|gb|ACD04790.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
Length = 253
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 51/231 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + ++ + +PDV+ LQE+ K P+ ++L
Sbjct: 1 MKLVSWNVNGLRAVLGKG---MADAVDALEPDVLCLQEI-------KARPEQVKDLW--- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+SS P +Q+W + Y+G +L + + +S S+ ++
Sbjct: 48 -------------ISSWP---HQLWNPAEKAGYSGVLILSRV----RPLSTSVGIGWPEH 87
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRV EFE FYL+N Y PN+ + E R +WD +E+V + KP+++CG
Sbjct: 88 DREGRVCTMEFEGFYLVNCYTPNS--QNELVRLPYREQWDAAFREYVAGLAETKPVVFCG 145
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
DLNV+HEEID++ P KE+ GF+ ER F +L+
Sbjct: 146 DLNVAHEEIDIARP---------------KENRFSAGFSDQERAGFTLLLE 181
>gi|409996804|ref|YP_006751205.1| exodeoxyribonuclease [Lactobacillus casei W56]
gi|406357816|emb|CCK22086.1| Exodeoxyribonuclease [Lactobacillus casei W56]
Length = 290
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 57/228 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A + D P HQ
Sbjct: 39 MKLISWNVNGLRAVLK---KDFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 90
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 91 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVP 121
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 122 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 179
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
CGDLNV+H+EID+ + +K + GFT ER F
Sbjct: 180 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADF 212
>gi|347549181|ref|YP_004855509.1| putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346982252|emb|CBW86246.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 251
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ + D D+ LQE ++ A G D
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FESVDADIFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L+ +
Sbjct: 45 -------------LDLPEYKDY---WNYAVKKGYSGTAIFTK--IEPISVRYGLDIP--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I +V + KP++ C
Sbjct: 85 HDTEGRVITLEFEKFFMITVYTPNS--QAELKRLDYRMTFEDAILTYVKKLDETKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GF+ ER +F L+ + F
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTTFLEAGFVDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420148029|ref|ZP_14655302.1| Exodeoxyribonuclease III [Lactobacillus gasseri CECT 5714]
gi|398400376|gb|EJN53933.1| Exodeoxyribonuclease III [Lactobacillus gasseri CECT 5714]
Length = 275
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 107/241 (44%), Gaps = 50/241 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ N I DPD+IA+QE ++ A G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSARAKLTRGVLNTIKEKDPDIIAIQETKLRATG---PTKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADS----KYAGTALLVKKCFQPKKVS 151
E+ L+ M F +Y W ++ YAGT L K P+ V+
Sbjct: 58 EI-----------LVEM-------FPDYDYVWRSSEEPARKGYAGTMFLYKNTLTPE-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR++ EF+ +Y+ Y PN+G E R+ WD++ E++ +
Sbjct: 99 KPVIGAPEPMDHEGRILTLEFDNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H ID+ HPE + GFT ER+ F +L
Sbjct: 157 DQVKPVIASGDYNVAHTPIDLKHPE---------------NNHHNAGFTDEERQDFDKLL 201
Query: 271 K 271
K
Sbjct: 202 K 202
>gi|198276716|ref|ZP_03209247.1| hypothetical protein BACPLE_02915 [Bacteroides plebeius DSM 17135]
gi|198270241|gb|EDY94511.1| exodeoxyribonuclease III [Bacteroides plebeius DSM 17135]
Length = 252
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L F + T D D LQE +M
Sbjct: 2 IKLISWNVNGLRACCDKG---FRDIFTQLDADFFCLQETKM------------------- 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F+ Y +W+ A+ K Y+GTA+ K QP +V++ L +
Sbjct: 40 ---QEGQLDL-------SFEGYTSYWNYAEKKGYSGTAIFTKH--QPLQVTYGLGID--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E E F+L+ Y PN+ ++ R WD + ++ + KP++ C
Sbjct: 86 HDHEGRVITLEMEKFFLVTVYTPNS--QDGLKRLDYRMTWDDDFRAYLQKLDQSKPVLVC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P+ ++N GFT ER++F +L I F
Sbjct: 144 GDLNVAHKEIDLKNPK---TNRMNA------------GFTDQEREKFQLLLDAGFIDTFR 188
Query: 278 CFY 280
FY
Sbjct: 189 YFY 191
>gi|385216679|ref|YP_005776636.1| exodeoxyribonuclease [Helicobacter pylori F32]
gi|317181208|dbj|BAJ58994.1| exodeoxyribonuclease [Helicobacter pylori F32]
Length = 250
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 109/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M QE
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM-----------QQEQ---- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 43 --------------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|384899763|ref|YP_005775143.1| exodeoxyribonuclease [Helicobacter pylori F30]
gi|317179707|dbj|BAJ57495.1| exodeoxyribonuclease [Helicobacter pylori F30]
Length = 250
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 59/244 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIW 218
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F VL+ KP+I
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKVLELK-KPVIV 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--F 276
CGDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTF 186
Query: 277 LCFY 280
FY
Sbjct: 187 RYFY 190
>gi|377557088|ref|ZP_09786749.1| Exodeoxyribonuclease III [Lactobacillus gastricus PS3]
gi|376166474|gb|EHS85380.1| Exodeoxyribonuclease III [Lactobacillus gastricus PS3]
Length = 278
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 104/243 (42%), Gaps = 56/243 (23%)
Query: 42 LKFVTWNANSL---LLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + + T DPD IA+QE ++ A+G K HQ
Sbjct: 1 MKLISWNIDSLNAALTGTSDRSEQTRAVLKTIAAQDPDTIAIQETKLGASG---LTKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADS----KYAGTALLVKKCFQPKKVS 151
A + F YQ W ++ YAGT L K + P V+
Sbjct: 58 ------------------AGLAEFFPGYQYVWRSSEEPARKGYAGTLYLYKDEYTPT-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
+ + + +GR+I EF F+L Y PN G N +R R WD R +E++
Sbjct: 99 YPVIDAPSPMDQEGRIITLEFPDFFLTEVYTPNAG-----NGLKRLAEREVWDDRFREYL 153
Query: 209 LQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
KP++ GDLNV+HEEID++HP + GFT ER F
Sbjct: 154 QSLDQEKPVLVSGDLNVAHEEIDLAHP---------------GSNHHSAGFTDEERSHFT 198
Query: 268 AIL 270
+L
Sbjct: 199 KLL 201
>gi|384046695|ref|YP_005494712.1| exodeoxyribonuclease III [Bacillus megaterium WSH-002]
gi|345444386|gb|AEN89403.1| Exodeoxyribonuclease III [Bacillus megaterium WSH-002]
Length = 253
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 110/231 (47%), Gaps = 56/231 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F ++ + DV +QE ++ QE + D
Sbjct: 1 MKLISWNVNGIRACVRKG---FLDYFQEVNADVFCIQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ + Y +W+ A K Y+GTA+ K+ +P VS+ ++K +
Sbjct: 46 Q-----------------LEGYYQYWNYAVKKGYSGTAVFTKQ--KPLSVSYGVDKES-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
E +GR+I EFE Y++N Y PN+ K + + R +W+ + ++ + S K +I C
Sbjct: 85 -EDEGRIITLEFEQCYVVNVYTPNS--KRDLARLEERLQWEDDLLVYLNKLNSRKAVILC 141
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H EID+ +P+ PN+ G GFTI ER + +L
Sbjct: 142 GDLNVAHAEIDLRNPK------------PNR---GNSGFTIEERGKMTTLL 177
>gi|225548156|ref|ZP_03769441.1| hypothetical protein RUMHYD_00135 [Blautia hydrogenotrophica DSM
10507]
gi|225040687|gb|EEG50933.1| exodeoxyribonuclease III [Blautia hydrogenotrophica DSM 10507]
Length = 251
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 55/242 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + +K F + + D+ +QE + +
Sbjct: 1 MKFISWNVNGIRACLKKG---FEEYFQEANADIFCIQETKCQEGQVE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
L+ P + Y W S Y+GTA+ K+ +P VS+ + ++
Sbjct: 45 -------------LTLPGYHQY--WNSAVRKGYSGTAIFAKR--EPLSVSYGI--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI E+E FY + Y PN+ + E R W++ E++ + KP++WCG
Sbjct: 86 DQEGRVITLEYEDFYFVTVYTPNS--QNELARLSYRMDWERDFLEYLTKLEERKPVVWCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FLC 278
DLNV+H+EID+ +P K + GFT ER F +L+ I F
Sbjct: 144 DLNVAHQEIDLKNP---------------KTNRKNAGFTDEERACFTKVLESGFIDTFRY 188
Query: 279 FY 280
FY
Sbjct: 189 FY 190
>gi|167759302|ref|ZP_02431429.1| hypothetical protein CLOSCI_01649 [Clostridium scindens ATCC 35704]
gi|336422208|ref|ZP_08602360.1| exodeoxyribonuclease [Lachnospiraceae bacterium 5_1_57FAA]
gi|167663176|gb|EDS07306.1| exodeoxyribonuclease III [Clostridium scindens ATCC 35704]
gi|336009118|gb|EGN39116.1| exodeoxyribonuclease [Lachnospiraceae bacterium 5_1_57FAA]
Length = 250
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N + V+ F F D D+ +QE +M
Sbjct: 1 MKFVSWNVNGIRACVQKG---FMEFFQEADADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L +P + Y W+ A K Y+GTA+ K+ +P VS+ + +
Sbjct: 39 ---QEGQL----ELETPGYHQY---WNYAKKKGYSGTAIFTKQ--EPISVSYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE +Y + Y PN+ + E R +W+ ++ + KP+I+C
Sbjct: 85 HDQEGRVITLEFEDYYFITVYTPNS--QNELARLPYRMQWEDDFLAYLKKLEEAKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER +F +++ I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKFTSLVDAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|406666269|ref|ZP_11074037.1| Exodeoxyribonuclease [Bacillus isronensis B3W22]
gi|405385808|gb|EKB45239.1| Exodeoxyribonuclease [Bacillus isronensis B3W22]
Length = 252
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 96/230 (41%), Gaps = 53/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V F ++ D D LQE + + +
Sbjct: 1 MKFISWNVNGIRACVNKG---FLDYFREMDADFFCLQETKCQVGQIDLQLEGY------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
YQ W S Y+GTA+ K +P V + +E
Sbjct: 51 ---------------------YQYWHSAVKKGYSGTAVFTKH--EPLAVYYGIENEIAA- 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+GR++ E+E FYL+NTY PN K + + R W+ R++ ++ + K P+I+CG
Sbjct: 87 -DEGRILTLEYENFYLVNTYTPNA--KRDLTRLEERLLWEDRMRIYLKELDAKKPVIYCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+H E+D+ + K + G GFT ER + +L
Sbjct: 144 DLNVAHSELDIKNV---------------KSNIGNSGFTYEERGKMTDLL 178
>gi|420513485|ref|ZP_15011963.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
gi|393155902|gb|EJC56173.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
Length = 250
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDKEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420500328|ref|ZP_14998874.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
gi|393152095|gb|EJC52396.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
Length = 250
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|339497818|ref|ZP_08658794.1| exonuclease III [Leuconostoc pseudomesenteroides KCTC 3652]
Length = 273
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 107/240 (44%), Gaps = 53/240 (22%)
Query: 42 LKFVTWNANSLLLRVKN-------NWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKN 93
+K ++WN +S+ V++ W +N I PDV A+QE ++ A G +K
Sbjct: 1 MKLISWNIDSINAAVEHKSARGEMTWSVLNN-IAEATPDVFAIQETKLKATGLTKKQANA 59
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWW--SLADSKYAGTALLVKKCFQPKKVS 151
EL F +Y ++ SLA S Y+GT +L ++ +P V
Sbjct: 60 IAEL----------------------FPDYHVFVNPSLARSGYSGTMVLSRQ--EPLSVD 95
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GRVI EF FY+ Y PN+G E R WD + + ++
Sbjct: 96 FPKIDAPGDMDMEGRVITLEFANFYVSTVYTPNSG--SELARLDDRGLWDDQYRRYISSL 153
Query: 212 SGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
K P+I+ GD+NV+HEEID+ +P K + GFT ER++F +L
Sbjct: 154 DQKKPVIFSGDMNVAHEEIDLKNP---------------KTNHHSAGFTDQEREKFTTLL 198
>gi|254780031|ref|YP_003058138.1| exodeoxyribonuclease III [Helicobacter pylori B38]
gi|254001944|emb|CAX30201.1| Putative exodeoxyribonuclease [Helicobacter pylori B38]
Length = 250
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|217034282|ref|ZP_03439699.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
gi|216943254|gb|EEC22719.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
Length = 250
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 109/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M QE
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM-----------QQEQ---- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 43 --------------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|89897437|ref|YP_520924.1| hypothetical protein DSY4691 [Desulfitobacterium hafniense Y51]
gi|219670588|ref|YP_002461023.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DCB-2]
gi|89336885|dbj|BAE86480.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219540848|gb|ACL22587.1| exodeoxyribonuclease III Xth [Desulfitobacterium hafniense DCB-2]
Length = 250
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 59/238 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F D+ LQE ++
Sbjct: 1 MKLISWNVNGLRACLNKG---FMDFFQQEQADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+EE++ PF+ Y +W+ A K Y+GTA+ KK +P VS+ + +
Sbjct: 39 ---QEEQI---------PFQLEGYHAYWNFAQKKGYSGTAVFAKK--EPLSVSYGIGQE- 83
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+++ +GRVI EF+TFYL+ Y PN+ + + R W+ ++ KP+I
Sbjct: 84 -EHDQEGRVITLEFDTFYLVTVYTPNS--QRDLARLDYRMIWEAEFLGYLKNLEKSKPVI 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
CGDLNV+H EID+ +P K + GFT ER +F +LK I
Sbjct: 141 LCGDLNVAHTEIDLKNP---------------KTNRKNAGFTDEERAKFSELLKNGFI 183
>gi|282858966|ref|ZP_06268104.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
gi|424898885|ref|ZP_18322433.1| exodeoxyribonuclease III [Prevotella bivia DSM 20514]
gi|282588246|gb|EFB93413.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
gi|388593595|gb|EIM33832.1| exodeoxyribonuclease III [Prevotella bivia DSM 20514]
Length = 249
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V N F D D LQE +M
Sbjct: 1 MKFISWNVNGLRACVGKN---FKEDFAALDADFFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F Y+ +W+ AD K Y+GTA+ K +P V+ + +
Sbjct: 39 ---QEGQLDL-------SFPGYESYWNYADKKGYSGTAIFTKH--KPLTVTTGI--GIDE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E + FYL+ Y PN+ ++E R +W+ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEMDDFYLVTVYTPNS--QDELKRLAYRMQWETDFQAYLHKLDEHKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GD+NV+HEEID+ +P K + GF+ ER++ +L
Sbjct: 143 GDMNVAHEEIDLKNP---------------KTNHHNAGFSDEEREKMTILL 178
>gi|46908012|ref|YP_014401.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47094151|ref|ZP_00231871.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217964070|ref|YP_002349748.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|226224385|ref|YP_002758492.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254826392|ref|ZP_05231393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|254933631|ref|ZP_05266990.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|255521086|ref|ZP_05388323.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL J1-175]
gi|300766428|ref|ZP_07076383.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|386008552|ref|YP_005926830.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|386027157|ref|YP_005947933.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|386732521|ref|YP_006206017.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281392|ref|YP_006682290.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404287210|ref|YP_006693796.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405750132|ref|YP_006673598.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|405753007|ref|YP_006676472.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|405755941|ref|YP_006679405.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|406704564|ref|YP_006754918.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|417315430|ref|ZP_12102109.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|422809864|ref|ZP_16858275.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|424714659|ref|YP_007015374.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
gi|424823542|ref|ZP_18248555.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|46881282|gb|AAT04578.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47017476|gb|EAL08289.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217333340|gb|ACK39134.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|225876847|emb|CAS05556.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293585194|gb|EFF97226.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|293595632|gb|EFG03393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|300512852|gb|EFK39944.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|307571362|emb|CAR84541.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|328466425|gb|EGF37573.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|332312222|gb|EGJ25317.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|336023738|gb|AEH92875.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|378752065|gb|EHY62652.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|384391279|gb|AFH80349.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219332|emb|CBY70696.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|404222207|emb|CBY73570.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|404225141|emb|CBY76503.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|404228027|emb|CBY49432.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404246139|emb|CBY04364.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361594|emb|CBY67867.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|424013843|emb|CCO64383.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
Length = 251
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 106/243 (43%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 85 HDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GF+ ER +F A L I F
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAGFIDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|425790062|ref|YP_007017982.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
gi|425628377|gb|AFX91845.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
Length = 250
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NVEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420456020|ref|ZP_14954844.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
gi|393071140|gb|EJB71927.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
Length = 250
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420421296|ref|ZP_14920374.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
gi|393037814|gb|EJB38848.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
Length = 250
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNNVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|373454216|ref|ZP_09546089.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
gi|371936051|gb|EHO63787.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
Length = 254
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 53/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK+++WN N L +K F + D D LQE ++ + HQ
Sbjct: 4 LKYISWNVNGLRACIKKG---FMDAFNALDADCFCLQETKL---------QPHQ------ 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P + +Q W S Y+GTA+ K+ +P V++ L ++
Sbjct: 46 -----------IELELPGY--HQYWNSAVKKGYSGTAIFTKE--EPLSVTYGLGIE--EH 88
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GR+I A+F + YLL Y PN+ + R W+K ++E++ + + KP+I CG
Sbjct: 89 DQEGRLITADFGSHYLLCCYTPNS--QRGLARLSYRMTWEKAMKEYMTKLAAEKPVILCG 146
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+HE+ID+++P N ++ GFT ER R +L
Sbjct: 147 DLNVAHEDIDIANP------------ASNHKN---AGFTDEERGRMTDLL 181
>gi|393199117|ref|YP_006460959.1| exonuclease III [Solibacillus silvestris StLB046]
gi|327438448|dbj|BAK14813.1| exonuclease III [Solibacillus silvestris StLB046]
Length = 252
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 96/230 (41%), Gaps = 53/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V F ++ D D LQE + + +
Sbjct: 1 MKFISWNVNGIRACVNKG---FLDYFREMDADFFCLQETKCQVGQIDLQLEGY------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
YQ W S Y+GTA+ K +P V + +E
Sbjct: 51 ---------------------YQYWHSAVKKGYSGTAVFTKH--EPLAVYYGIENEIAA- 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+GR++ E+E FYL+NTY PN K + + R W+ R++ ++ + K P+I+CG
Sbjct: 87 -DEGRILTLEYENFYLVNTYTPNA--KRDLTRLEERLLWEDRMRIYLKELDAKKPVIYCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+H E+D+ + K + G GFT ER + +L
Sbjct: 144 DLNVAHSELDIKNV---------------KSNIGNSGFTYEERGKMTDLL 178
>gi|293376523|ref|ZP_06622751.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
gi|292644749|gb|EFF62831.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
Length = 251
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 106/242 (43%), Gaps = 55/242 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK F +F+ PD + +QE ++ QE + D
Sbjct: 1 MKFISWNVNGLRACVKKG---FLDFVEAEQPDFLCVQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ YQ W Y+GTA+ K +P +V++ L ++
Sbjct: 46 QLD----------------GYYQYWNYAVKKGYSGTAIFTKH--EPLQVTYGL--NIAEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI E+ FYL+ Y PN+ + E R W++ + +++ KP+I CG
Sbjct: 86 DQEGRVITLEYNDFYLVTVYTPNS--QNELARLDYRLTWEEAFRNYLIGLDVLKPVIVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FLC 278
DLNV+H++ID+ +P K + GFTI ER +L I F
Sbjct: 144 DLNVAHQQIDLKNP---------------KTNTKNAGFTIEERNEMTKLLNSGFIDTFRY 188
Query: 279 FY 280
FY
Sbjct: 189 FY 190
>gi|420483017|ref|ZP_14981651.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
gi|393097621|gb|EJB98214.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
Length = 250
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|359406465|ref|ZP_09199155.1| exodeoxyribonuclease III [Prevotella stercorea DSM 18206]
gi|357555725|gb|EHJ37349.1| exodeoxyribonuclease III [Prevotella stercorea DSM 18206]
Length = 249
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 103/236 (43%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V+ +F T D D LQE +M A
Sbjct: 1 MKFISWNVNGLRACVQ---KDFEESFRTLDADFFCLQETKMQAG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+L L F+ Y +W+ A+ K Y+GTA+ + P V++ + +
Sbjct: 42 ------QLDLQ-------FEGYTSYWNYAEKKGYSGTAIYTRH--TPLSVTYGIGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E E FYL+ Y PN+ ++ R KW+ +++ K P+I C
Sbjct: 85 HDHEGRVITLEMEDFYLVTCYTPNS--QDGLRRLDYRMKWEDDFLQYIKGLDAKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+HEEID+ +P K + GFT E + A L E I
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFTDEECAKMTAFLGEGFI 183
>gi|325299788|ref|YP_004259705.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
gi|324319341|gb|ADY37232.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
Length = 251
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L F + T + D LQE +M A G D
Sbjct: 1 MKLISWNVNGLRACCDKG---FRDAFTRLNADFFCLQETKMQA-GQLDLA---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y +W+ A+ K Y+GTA+ + QP VS+ + +
Sbjct: 47 ------------------FDGYTSYWNYAEKKGYSGTAIFTRH--QPLNVSYGMGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E E FYL+ Y PN+ ++ R W+ + ++L+ K P++ C
Sbjct: 85 HDREGRVITLEMENFYLVTVYTPNS--QDGLKRLDYRMTWEDAFRRYLLELDAKKPVLVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P+ ++N GFT ER++F +L I F
Sbjct: 143 GDLNVAHKEIDLKNPK---TNRMN------------AGFTDQEREKFQTLLDAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|290893090|ref|ZP_06556079.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404408223|ref|YP_006690938.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
gi|290557450|gb|EFD90975.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404242372|emb|CBY63772.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
Length = 251
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 106/243 (43%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDSDIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 85 HDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GF+ ER +F A L I F
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAGFIDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420473134|ref|ZP_14971815.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
gi|393086638|gb|EJB87312.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
Length = 250
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFELFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|386746941|ref|YP_006220158.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
gi|384553190|gb|AFI08138.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
Length = 250
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420467774|ref|ZP_14966523.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
gi|393083034|gb|EJB83748.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
Length = 250
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|440300887|gb|ELP93334.1| exodeoxyribonuclease III, putative [Entamoeba invadens IP1]
Length = 310
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 109/234 (46%), Gaps = 52/234 (22%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
K++ K +++N N + +K +FI T D++ LQE ++ KN E+
Sbjct: 55 KENEYKIMSYNVNGINASIKKG---LIDFINTEKADIVCLQETKLQ-------HKNRVEM 104
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT 157
P +K++ +S Y+GTA+L K +P V+++L +
Sbjct: 105 --------------------PEYKHHYYNYSTNKKGYSGTAVLSK--IKPINVTYTLNE- 141
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPL 216
K DGR+I EF+ FYL+NTY N+G ++ EN +R ++WD ++ + + S K +
Sbjct: 142 --KTHNDGRIITVEFDNFYLVNTYVQNSG-RKLENLEKRAKEWDVDLKSHIHRLSLSKKV 198
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
IWCGD+NV D++ P KE GFT ERK IL
Sbjct: 199 IWCGDMNVVLRWSDLAKP---------------KEWLRCCGFTKEERKGTSDIL 237
>gi|16803822|ref|NP_465307.1| hypothetical protein lmo1782 [Listeria monocytogenes EGD-e]
gi|16411236|emb|CAC99860.1| lmo1782 [Listeria monocytogenes EGD-e]
Length = 251
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 106/243 (43%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 85 HDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDNTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GF+ ER +F A L I F
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAGFIDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|423518373|ref|ZP_17494854.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
gi|401161100|gb|EJQ68468.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
Length = 252
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEKSNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+++C
Sbjct: 86 HDQEGRVITLEFDDFYMITLYTPNS--KRGLERVDYRMEWEDDFRAYIKRLDEKKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F IL+E +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEGFV 184
>gi|420442874|ref|ZP_14941805.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
gi|393056819|gb|EJB57729.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
Length = 250
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEMEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|366090151|ref|ZP_09456517.1| exodeoxyribonuclease [Lactobacillus acidipiscis KCTC 13900]
Length = 275
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 111/246 (45%), Gaps = 40/246 (16%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L +N S I+T+D DVIA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSNRALLSRDVLKTISTYDADVIAIQETKLSAKG---PTKKHV 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADS----KYAGTALLVKKCFQPKKVS 151
E+ +D F +Y + W ++ YAGT + KK P V+
Sbjct: 58 EVLNDF------------------FPDYALAWRSSEEPARKSYAGTMFIYKKSLDPT-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+ EFE ++ Y PN+G K + R+ WD++ E++
Sbjct: 99 YPQIGAPATMDQEGRITTLEFEKCFVTQVYTPNSGNKLDR--LSDRQVWDQKYIEYLQTL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWG---QPGFTIAERKRFG 267
KP+I GD N +HEEID++HP+ + G+ + D+ + GF + R G
Sbjct: 157 DQQKPVISSGDFNCAHEEIDLAHPD--RNHRSAGFTDEERIDFTKLLESGFNDSFRTVHG 214
Query: 268 AILKEY 273
+ Y
Sbjct: 215 NVTGAY 220
>gi|419419212|ref|ZP_13959471.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
gi|384372800|gb|EIE28363.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
Length = 250
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L + I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNDGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|288556715|ref|YP_003428650.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
gi|288547875|gb|ADC51758.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
Length = 251
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F +F + D+ LQE ++ + EL+ D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDFFHEQNADIFCLQETKLQ--------EGQIELELD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ K+ +P V + + + L+
Sbjct: 49 --------------------GYHQFWNYALKKGYSGTAVFTKQ--KPISVRYGVGE--LE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
E +GR+I EF++FYL+N Y N K + + R +W+ ++E++L KP+++C
Sbjct: 85 SEDEGRIITLEFDSFYLVNVYTINA--KRDLSRLPERLEWEDALKEYLLDLDRHKPVVYC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H E+D+ + + + G GFT+ ER + +L+ I
Sbjct: 143 GDLNVAHAEVDLKNA---------------RSNHGNSGFTLEERGKMTTLLESGFI 183
>gi|255026927|ref|ZP_05298913.1| hypothetical protein LmonocytFSL_12426 [Listeria monocytogenes FSL
J2-003]
Length = 178
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 102/231 (44%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEADADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 85 HDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDNTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+HEEID+ +P K + GF+ ER +F A L
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFL 178
>gi|325854960|ref|ZP_08171676.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
gi|325483938|gb|EGC86878.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
Length = 249
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 106/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V +F + D LQE +M A G D
Sbjct: 1 MKLISWNVNGLRACVG---KDFEQQFKALNADFFCLQETKMQA-GQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+S P + +Y W+ AD K Y+GTA+ K +P V++ + +
Sbjct: 45 -------------ISFPGYASY---WNYADKKGYSGTAIFTKH--KPLDVTYGIGMD--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E + FYL+ Y PN+ ++ R KW+K Q+++ + KP++ C
Sbjct: 85 HDHEGRVITLEMDDFYLVTVYTPNS--QDGLRRLDYRMKWEKDFQDYLHRLDRKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+HEEID+ +P K + GFT ER++ +L I
Sbjct: 143 GDMNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTQLLDSGFI 183
>gi|422419400|ref|ZP_16496355.1| exodeoxyribonuclease III, partial [Listeria seeligeri FSL N1-067]
gi|313632791|gb|EFR99747.1| exodeoxyribonuclease III [Listeria seeligeri FSL N1-067]
Length = 251
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ + + D D+ LQE ++ A G D
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEYFD---SVDADIFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GT KK +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTXXFTKK--EPLSVQYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I +V + KP++ C
Sbjct: 85 HDTEGRVITLEFEKFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GF+ ER +F A L+ + F
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTAFLEAGFVDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|384888368|ref|YP_005762879.1| exodeoxyribonuclease [Helicobacter pylori 52]
gi|261840198|gb|ACX99963.1| exodeoxyribonuclease [Helicobacter pylori 52]
Length = 250
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 109/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ I FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQNIF-------EFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|325845494|ref|ZP_08168785.1| exodeoxyribonuclease III [Turicibacter sp. HGF1]
gi|325488513|gb|EGC90931.1| exodeoxyribonuclease III [Turicibacter sp. HGF1]
Length = 215
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 106/242 (43%), Gaps = 55/242 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK F +F+ PD + +QE ++ QE + D
Sbjct: 1 MKFISWNVNGLRACVKKG---FLDFVEAEQPDFLCVQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ YQ W Y+GTA+ K +P +V++ L ++
Sbjct: 46 QLD----------------GYYQYWNYAVKKGYSGTAIFTKH--EPLQVTYGL--NIAEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI E+ FYL+ Y PN+ + E R W++ + +++ KP+I CG
Sbjct: 86 DQEGRVITLEYNDFYLVTVYTPNS--QNELARLDYRLTWEEAFRNYLIGLDVLKPVIVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FLC 278
DLNV+H++ID+ +P K + GFTI ER +L I F
Sbjct: 144 DLNVAHQQIDLKNP---------------KTNTKNAGFTIEERNEMTKLLNSGFIDTFRY 188
Query: 279 FY 280
FY
Sbjct: 189 FY 190
>gi|387908710|ref|YP_006339044.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
gi|387573645|gb|AFJ82353.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
Length = 250
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSIDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|291523803|emb|CBK89390.1| exodeoxyribonuclease III [Eubacterium rectale DSM 17629]
Length = 251
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 42/197 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+KF++WN N L V+ F +F + D D +QE ++ A D P HQ
Sbjct: 1 MKFISWNVNGLRACVQKG---FLDFFNSIDVDFFCIQESKLQAGQIDLDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K +P VS+ +
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFAKN--EPLSVSYGI--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
+++ +GRVI E++ FYL+ Y PN+ + E R +W+ +E++ KP++
Sbjct: 84 EHDKEGRVITLEYDNFYLVTCYTPNS--QNELKRLPYRMQWEDDFREYLKALDAQKPVVL 141
Query: 219 CGDLNVSHEEIDVSHPE 235
CGDLNV+H EID+ +P+
Sbjct: 142 CGDLNVAHNEIDLKNPK 158
>gi|392424943|ref|YP_006465937.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
gi|391354906|gb|AFM40605.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
Length = 253
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + F +F T + D+ +QE ++ A EL
Sbjct: 1 MKLISWNVNGFRSCLTKG---FLDFFNTVEADIFCIQESKLSAG--------QIEL---- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +++ A+ K Y+GTA+ KK QP SF +
Sbjct: 46 -----------------SLEGYTQYFNYAERKGYSGTAVFTKK--QPLTCSFGMGIPL-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR+I E++ FYL+N YAPN+ + E + R W++ + +V S KP+I+C
Sbjct: 85 HDKEGRMITLEYDEFYLINLYAPNS--QAELARLEYRLTWEEDFRRYVQTLNSHKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P+ N+ + GFT ER +F +L+ I
Sbjct: 143 GDLNVAHQEIDLKNPQ------------ANRRN---AGFTDEERLKFSELLESGFI 183
>gi|421720502|ref|ZP_16159782.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
gi|407219094|gb|EKE88911.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
Length = 250
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420407902|ref|ZP_14907061.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
gi|393025387|gb|EJB26493.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
Length = 250
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ I FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQNIF-------EFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420494787|ref|ZP_14993354.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
gi|393109942|gb|EJC10470.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
Length = 250
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIGE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|421712459|ref|ZP_16151793.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
gi|407209732|gb|EKE79620.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
Length = 250
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVITFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|383750553|ref|YP_005425656.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
gi|380875299|gb|AFF21080.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
Length = 250
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|332882010|ref|ZP_08449645.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357048168|ref|ZP_09109722.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
gi|332679934|gb|EGJ52896.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355528751|gb|EHG98229.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
Length = 250
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F D D LQE +M
Sbjct: 1 MKFISWNVNGLRACCEKG---FKESFAALDADFFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F+ Y+ +W+ A+ K Y+GTA+ + P V++ L +
Sbjct: 39 ---QEGQLDL-------EFEGYRSYWNYAEKKGYSGTAIFSRHA--PLNVTYGL--GLEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI E F+L+ Y PN+ ++ R +W++ + ++LQ + KP+I C
Sbjct: 85 HDKEGRVITLEMPDFFLVTVYTPNS--QDGLKRLDYRMQWEEAFRAYLLQLDTRKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H EID+ +P K + GFT ER++FG +L
Sbjct: 143 GDLNVAHREIDLKNP---------------KSNRKNAGFTDEEREKFGILL 178
>gi|168214660|ref|ZP_02640285.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|422874042|ref|ZP_16920527.1| exodeoxyribonuclease III [Clostridium perfringens F262]
gi|170713849|gb|EDT26031.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|380305037|gb|EIA17320.1| exodeoxyribonuclease III [Clostridium perfringens F262]
Length = 250
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYFQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + GFT ER +F +L I
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSGFI 183
>gi|256847688|ref|ZP_05553133.1| exodeoxyribonuclease III [Lactobacillus coleohominis 101-4-CHN]
gi|256715377|gb|EEU30353.1| exodeoxyribonuclease III [Lactobacillus coleohominis 101-4-CHN]
Length = 275
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 106/241 (43%), Gaps = 50/241 (20%)
Query: 42 LKFVTWNANSL---LLRVKNNWPEFSNF---ITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +S+ L E + I PDVIA+QE ++ SK+ P
Sbjct: 1 MKFISWNIDSINAALTGTSTRAGETRDVLHKIADLVPDVIAIQETKL----SKNGPT--- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ ++ L F +YQ+ W A YAGT L + PK +S
Sbjct: 54 ----------KKHFTVLNEL----FPDYQVAWRSSVEPARKGYAGTMYLYRTGLTPK-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF F++ Y PN+G R+ WD R +E++ Q
Sbjct: 99 YPQIGAPEPMDNEGRMITLEFPYFFVTEVYTPNSG--TGLRRLAERQIWDDRYREYLQQL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+HE ID++HPE + GFT ER+ F +L
Sbjct: 157 DQQKPVIASGDFNVAHEPIDLAHPE---------------NNHHSAGFTDEEREHFTKLL 201
Query: 271 K 271
K
Sbjct: 202 K 202
>gi|422422487|ref|ZP_16499440.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
gi|313637385|gb|EFS02862.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
Length = 251
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ + + D D+ LQE ++ A G D
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEYFD---SVDADIFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTKT--EPLSVQYGL--GIPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ F+++ Y PN+ + E R ++ I +V + KP++ C
Sbjct: 85 HDDEGRVITLEFDKFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GF+ ER +F A L+ + F
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTAFLEAGFVDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|255024226|ref|ZP_05296212.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL J1-208]
Length = 216
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 106/243 (43%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 85 HDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GF+ ER +F A L I F
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAGFIDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|253580808|ref|ZP_04858071.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847878|gb|EES75845.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 251
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 104/243 (42%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + + F D D+ LQE + K
Sbjct: 1 MKLISWNVNGIRACIGKG---FEESFAALDADIFCLQETKCQQGQVK------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ + Y+GTA+ KK +P V + + K
Sbjct: 45 -------------LELPGYYQY---WNYANRRGYSGTAVFTKK--EPLSVVYGI--GIEK 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E+E FYL+ Y PN+ + E + R W++ ++L+ KP+I C
Sbjct: 85 HDKEGRVITLEYEKFYLVTVYTPNS--QSELRRLEYRMHWEEDFLAYLLKLQESKPVICC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GD NV+H+EID+ +P K + GFT ER FG +L+ I F
Sbjct: 143 GDFNVAHQEIDLKNP---------------KTNRKNAGFTDEERACFGKVLESGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|208435390|ref|YP_002267056.1| exodeoxyribonuclease III [Helicobacter pylori G27]
gi|208433319|gb|ACI28190.1| exodeoxyribonuclease [Helicobacter pylori G27]
Length = 250
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420434804|ref|ZP_14933804.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|420503423|ref|ZP_15001957.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
gi|420505338|ref|ZP_15003854.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393052572|gb|EJB53518.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|393116870|gb|EJC17374.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393149519|gb|EJC49829.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
Length = 250
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420396107|ref|ZP_14895329.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|420402996|ref|ZP_14902182.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
gi|393011086|gb|EJB12275.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|393020162|gb|EJB21301.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
Length = 250
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|169345728|ref|ZP_02865687.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
gi|169297128|gb|EDS79244.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
Length = 250
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYFQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + GFT ER +F +L I
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSGFI 183
>gi|123487248|ref|XP_001324898.1| exodeoxyribonuclease III family protein [Trichomonas vaginalis G3]
gi|121907789|gb|EAY12675.1| exodeoxyribonuclease III family protein [Trichomonas vaginalis G3]
Length = 289
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 41/207 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K TWN SL R K+N F+ +I + PD+I +QE + H ++K+
Sbjct: 9 IKIATWNVASLRARWKDN---FTFYINSSKPDIICIQETKF-----------HVDMKES- 53
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
++ +K Y ++ + YAGT + K ++P V S
Sbjct: 54 ----------LKNFKLDGYKGY--FFHAKKAGYAGTCIYTK--YKPVSVKRSFA------ 93
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR-RKWDKRIQEFVLQCS-GKPLIWC 219
+PDGR I EF+ FYL+NTY N G E+ + ++W+ +I+ +++ KP+IW
Sbjct: 94 DPDGRCITMEFKNFYLINTYVVNAG--EDLGRLDYKIKEWNPKIRNHIMELEKKKPVIWT 151
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYV 246
GDLNV+H+ ID+ E K+ GY
Sbjct: 152 GDLNVAHKPIDIWQAE--GHEKIAGYT 176
>gi|420457745|ref|ZP_14956558.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
gi|393072264|gb|EJB73043.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
Length = 250
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420496454|ref|ZP_14995017.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
gi|393110512|gb|EJC11037.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
Length = 250
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420401021|ref|ZP_14900220.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
gi|393016629|gb|EJB17788.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
Length = 250
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420397962|ref|ZP_14897175.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
gi|393014636|gb|EJB15807.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
Length = 250
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|385249934|ref|YP_005778153.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|420402627|ref|ZP_14901815.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
gi|317182729|dbj|BAJ60513.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|393016094|gb|EJB17254.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
Length = 250
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|311070625|ref|YP_003975548.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|419820989|ref|ZP_14344593.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
gi|310871142|gb|ADP34617.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|388474900|gb|EIM11619.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
Length = 252
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 107/237 (45%), Gaps = 56/237 (23%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
+K ++WN N L L K N F++++ + D+ LQE+++ K P+
Sbjct: 1 MKLMSWNVNGLRALLTKMN---FNSYLEEENVDIFCLQEIKLQDGQIKLEPEG------- 50
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
Y ++W+ A+ K Y+GTA+ KK +P V++ L
Sbjct: 51 ----------------------YHVYWNYAEKKGYSGTAIFTKK--EPLAVTYGL--GIK 84
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GR+I EFE Y++ Y PN K R W+ ++ KP++
Sbjct: 85 EHDQEGRLITLEFENMYVITVYTPNA--KRGLERIDYRMDWEDAFLSYIKALDVKKPVVL 142
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
CGDLNV+H+EID+ +P K + GF+ ER+RF +L+E I
Sbjct: 143 CGDLNVAHQEIDLKNP---------------KANRKNAGFSDQERERFSQMLEEGFI 184
>gi|212697551|ref|ZP_03305679.1| hypothetical protein ANHYDRO_02124 [Anaerococcus hydrogenalis DSM
7454]
gi|212675454|gb|EEB35061.1| hypothetical protein ANHYDRO_02124 [Anaerococcus hydrogenalis DSM
7454]
Length = 275
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 106/244 (43%), Gaps = 48/244 (19%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L +N + S + I D D+I LQE ++P G K H+
Sbjct: 1 MKIISWNIDSLNAALTSDSNRAKMSRDVLDTIIKEDADIICLQETKLPRTG---PSKKHK 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSF 152
E+ + S P NY W S A YAG KK F+P +S+
Sbjct: 58 EILE----------------SYFPQYNYA-WISSQEPARKSYAGCLTFYKKEFEPI-ISY 99
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
+ + R+I EFE FYL Y PN G + R+ WDK+ ++ +
Sbjct: 100 PTLDAPDTMDQEARLITLEFENFYLTQVYTPNAG--SGLSRLDLRQVWDKKYANYLEKLD 157
Query: 213 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP+I CGD NV+H+EID+ HPE + GFT ER F +L
Sbjct: 158 QNKPVIACGDFNVAHKEIDLKHPE---------------NNHKSAGFTDEERSGFTNLLN 202
Query: 272 EYLI 275
+ +
Sbjct: 203 KGFV 206
>gi|210634817|ref|ZP_03298323.1| hypothetical protein COLSTE_02250 [Collinsella stercoris DSM 13279]
gi|210158621|gb|EEA89592.1| exodeoxyribonuclease III [Collinsella stercoris DSM 13279]
Length = 280
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 106/256 (41%), Gaps = 72/256 (28%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNH 94
N+ LK +WN N L +K + P F++ ++ D D++ LQE ++ + D P H
Sbjct: 3 NTASRTLKLASWNVNGLRAVLKKD-PSFTDIVSELDADILGLQETKLQEGQVEIDLPGYH 61
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 153
Q WS A+ K Y+GTA+ + +P V +
Sbjct: 62 QV------------------------------WSYAERKGYSGTAVFTRD--EPLSVRHA 89
Query: 154 ----------------LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 197
LE A+ +GRV EFE F+ ++ Y PN + E R
Sbjct: 90 DAVLAAGRAAGLTDDQLELVAVA-ATEGRVCALEFERFWFVDVYTPNA--QGELARLDTR 146
Query: 198 RKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWG 254
WD + F+L +GKP++ CGD NV+H EID+ +P K + G
Sbjct: 147 MAWDDAYRAFLLSLEDETGKPVVTCGDFNVAHNEIDLKNP---------------KSNRG 191
Query: 255 QPGFTIAERKRFGAIL 270
GF+ ER +F +L
Sbjct: 192 NAGFSDEERSKFVELL 207
>gi|116493341|ref|YP_805076.1| exonuclease III [Pediococcus pentosaceus ATCC 25745]
gi|116103491|gb|ABJ68634.1| Exonuclease III [Pediococcus pentosaceus ATCC 25745]
Length = 251
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK+ F + D D+ +QE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKHG---FLDVFKELDADIFCIQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ KK +P V + L +
Sbjct: 45 -------------LELPHYYQY---WNYAEKKGYSGTAIFTKK--KPLAVRYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ + + + R WD + ++ Q + KP+I+C
Sbjct: 85 HDQEGRIITLEFEKFYVITCYTPNS--QPKLKRLEYRMAWDDAFRAYIDQLNQHKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ + +K + GFT ER +F +L
Sbjct: 143 GDLNVAHQEIDLKN---------------DKTNHKNAGFTDEERNKFTQLL 178
>gi|345022885|ref|ZP_08786498.1| exodeoxyribonuclease III Xth [Ornithinibacillus scapharcae TW25]
Length = 252
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V+ + ++ N I D D+ +QE ++ + EL+
Sbjct: 1 MKLVSWNVNGLRACVRKGFLDYFNEI---DADIFCIQETKLQ--------EGQIELE--- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A+ K Y+GTA+ K F+P V + L +
Sbjct: 47 ------------------LNGYHQYWNYAEKKGYSGTAVFTK--FKPISVKYGLSNEESQ 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
E GR++ EFE F+L+N Y PN+ + + R +W+ + E VL KP++ C
Sbjct: 87 VE--GRILTLEFENFFLINVYTPNS--QRDLARLDVRLEWEDVLLEHVLAHDRIKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H EID+ + K ++G GFT ER++ L I
Sbjct: 143 GDLNVAHREIDIRNY---------------KSNYGNSGFTDEEREKMTRFLNAGFI 183
>gi|408411522|ref|ZP_11182670.1| Exodeoxyribonuclease III [Lactobacillus sp. 66c]
gi|409350015|ref|ZP_11233286.1| Exodeoxyribonuclease III [Lactobacillus equicursoris CIP 110162]
gi|407874302|emb|CCK84476.1| Exodeoxyribonuclease III [Lactobacillus sp. 66c]
gi|407877730|emb|CCK85344.1| Exodeoxyribonuclease III [Lactobacillus equicursoris CIP 110162]
Length = 275
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP--EFSNFITT----FDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + P E + I T DPD++A+QE ++PA+G K HQ
Sbjct: 1 MRLISWNIDSLNAALTGTSPRAEMTRGILTKLHDLDPDILAIQETKLPASGPS---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+L + F Y W A YAGT L KK +P V+
Sbjct: 58 KLLAEL------------------FPEYTYVWRSSVEPARKGYAGTMYLYKKDLEPT-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF FY+ Y PN+G + R++WD+ + ++ +
Sbjct: 99 YPEIGAPEPMDAEGRMITLEFPDFYVTEVYTPNSGTGLKR--LDERQEWDQCYRTYLEKL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD N +++EID+ HPE + GFT ER FG +L
Sbjct: 157 DAQKPVLASGDFNAAYQEIDLKHPE---------------NNHHSAGFTDEERAGFGQLL 201
>gi|90962461|ref|YP_536377.1| exodeoxyribonuclease III [Lactobacillus salivarius UCC118]
gi|301299216|ref|ZP_07205503.1| exodeoxyribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
gi|90821655|gb|ABE00294.1| Exodeoxyribonuclease III [Lactobacillus salivarius UCC118]
gi|300853176|gb|EFK80773.1| exodeoxyribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 275
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 104/241 (43%), Gaps = 52/241 (21%)
Query: 42 LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
+K ++WN +SL R K + + I +PD+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKQSREVLATIIDE-NPDIIAIQETKLSATGPT---KKH 56
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 150
Q + + F +Y+I W A YAGT L K P +
Sbjct: 57 Q------------------TILAEQFPDYEIAWRSSQEPARKGYAGTMFLYKNNLNPT-I 97
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
S+ + +GR+I EF++FY+ Y PN G + R+ WD++ ++++
Sbjct: 98 SYPEIDAPEPMDSEGRIITLEFDSFYVTQVYTPNAG--DGLRRLAERQVWDEKYADYLVS 155
Query: 211 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
KPL+ GD NV+H+EID++HP + GFT ER F +
Sbjct: 156 LDQNKPLLSSGDFNVAHKEIDLAHP---------------GNNHHSAGFTDEERAGFTNL 200
Query: 270 L 270
L
Sbjct: 201 L 201
>gi|325269387|ref|ZP_08136004.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
gi|324988308|gb|EGC20274.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
Length = 249
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 104/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V +F D D LQE +M A G D
Sbjct: 1 MKLISWNVNGLRACVG---KDFEQQFKALDADFFCLQETKMQA-GQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+S P + +Y W+ AD K Y+GTA+ K +P V++ + +
Sbjct: 45 -------------ISFPGYTSY---WNYADKKGYSGTAIFTKH--KPLDVTYGIGMD--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E + FYL+ Y PN+ ++ R KW+K Q ++ KP++ C
Sbjct: 85 HDHEGRVITLEMDDFYLVTVYTPNS--QDGLRRLDYRMKWEKDFQNYLHWLDEKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+HEEID+ +P K + GFT ER++ +L I
Sbjct: 143 GDMNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTQLLDSGFI 183
>gi|227891490|ref|ZP_04009295.1| exodeoxyribonuclease III [Lactobacillus salivarius ATCC 11741]
gi|227866637|gb|EEJ74058.1| exodeoxyribonuclease III [Lactobacillus salivarius ATCC 11741]
Length = 275
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 103/241 (42%), Gaps = 52/241 (21%)
Query: 42 LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
+K ++WN +SL R K + + I +PD+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKQSREVLATIIDE-NPDIIAIQETKLSATGPT---KKH 56
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 150
Q + + F +Y+I W A YAGT L K P V
Sbjct: 57 Q------------------TILAEQFPDYEITWRSSQEPARKGYAGTMFLYKNNLNPT-V 97
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
S+ + +GR+I EF+ FY+ Y PN G + R+ WD++ ++++
Sbjct: 98 SYPEIDAPEPMDSEGRIITLEFDNFYVTQVYTPNAG--DGLRRLAERQVWDEKYADYLVS 155
Query: 211 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
KPL+ GD NV+H+EID++HP + GFT ER F +
Sbjct: 156 LDQNKPLLSSGDFNVAHKEIDLAHP---------------GNNHHSAGFTDEERAGFTNL 200
Query: 270 L 270
L
Sbjct: 201 L 201
>gi|440793147|gb|ELR14342.1| exodeoxyribonuclease III, putative, partial [Acanthamoeba
castellanii str. Neff]
Length = 384
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 111/259 (42%), Gaps = 72/259 (27%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN SL V+ ++I +PDV+ LQE ++
Sbjct: 89 VKLISWNVFSLNAIVEKG--SLQHYIKEEEPDVLCLQETKL------------------- 127
Query: 102 KASREEKLILMRALSSPPFKNYQIW-WSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK 160
+ + +L + P Y+ S A Y+G A+ K ++P +V + +
Sbjct: 128 -TNSKIELFKGKTFHRPDIYQYEFHNCSTAIKGYSGVAMYSK--YRPLRVHHGI--GVEE 182
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-------- 212
++ +GRVI EF FYL+ +Y PN+G +E + R++W++ ++ ++L S
Sbjct: 183 HDNEGRVITLEFAGFYLVGSYIPNSG--DELKRLEYRQRWNRDMEAYLLSLSTSGLKAGL 240
Query: 213 --------------------GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 252
GKP+IWCGDLNV+HEEID+ P N Y
Sbjct: 241 DVHPHGHELEYRVLDESERKGKPVIWCGDLNVAHEEIDLHDPAN------NHYT------ 288
Query: 253 WGQPGFTIAERKRFGAILK 271
GFT ER F ++K
Sbjct: 289 ---SGFTDEERDDFTRVIK 304
>gi|385218180|ref|YP_005779656.1| exodeoxyribonuclease [Helicobacter pylori F16]
gi|317178229|dbj|BAJ56018.1| exodeoxyribonuclease [Helicobacter pylori F16]
Length = 250
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
+ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HNKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|302787589|ref|XP_002975564.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
gi|300156565|gb|EFJ23193.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
Length = 306
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 114/239 (47%), Gaps = 53/239 (22%)
Query: 37 SKKDPLKFVTWNANSL--LLRVKNNWPE----FSNFITTFDPDVIALQEVRMPAAGSKDA 90
S+K+ +K ++WN N L ++ KN E + + D DV+ LQE ++ KD
Sbjct: 33 SEKNLVKVISWNVNGLRACMKRKNELEEEGSVLARLANSEDFDVLCLQETKLQ---EKDV 89
Query: 91 PKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPK 148
Q++ S +W+ + SK Y+G AL+ + +P
Sbjct: 90 EAIKQKILGGYSNS---------------------FWTCSSSKLGYSGCALISR--IKPV 126
Query: 149 KVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV 208
V++ L + +++ +GRV+ AEF+TF+L++ Y PN+G + E ++ R +WD ++
Sbjct: 127 SVTYGLGIS--QHDGEGRVVTAEFDTFFLVSVYVPNSGQRLERLTY-RTTEWDPAFSTYL 183
Query: 209 LQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
L+ KP+I GDLN +HEEID+ P+ NK GFT ER F
Sbjct: 184 LELEKRKPVIVTGDLNCAHEEIDIYDPD------------GNKR---SAGFTCEERTSF 227
>gi|294499447|ref|YP_003563147.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
gi|294349384|gb|ADE69713.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
Length = 253
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 56/231 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F ++ + DV +QE ++ QE + D
Sbjct: 1 MKLISWNVNGIRACVRKG---FLDYFQEVNADVFCIQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ + Y +W+ A K Y+GTA+ K+ +P VS+ + K +
Sbjct: 46 Q-----------------LEGYYQYWNYAVKKGYSGTAVFTKQ--KPLSVSYGVGKES-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
E +GR+I EFE Y++N Y PN+ K + + R +W+ + ++ + S K +I C
Sbjct: 85 -EDEGRIITLEFEQCYVVNVYTPNS--KRDLARLEERLQWEDDLLVYLKKLNSRKAVILC 141
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H EID+ +P+ PN+ G GFTI ER + +L
Sbjct: 142 GDLNVAHAEIDLRNPK------------PNR---GNSGFTIEERGKMTTLL 177
>gi|227544091|ref|ZP_03974140.1| exodeoxyribonuclease III [Lactobacillus reuteri CF48-3A]
gi|338202504|ref|YP_004648649.1| exodeoxyribonuclease [Lactobacillus reuteri SD2112]
gi|227185924|gb|EEI65995.1| exodeoxyribonuclease III [Lactobacillus reuteri CF48-3A]
gi|336447744|gb|AEI56359.1| exodeoxyribonuclease [Lactobacillus reuteri SD2112]
Length = 275
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 108/243 (44%), Gaps = 56/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNN------WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +S+ + E I PDVIA+QE ++ SK+ P
Sbjct: 1 MKFISWNIDSINAALTGTSVRAGETREVLKKIAAMKPDVIAIQETKL----SKNGPT--- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ L +++ L F NY++ W A YAGT L ++PK V+
Sbjct: 54 ----------KKHLTVLQEL----FPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPK-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
+ + +GR+I EF FY+ Y PN+G N +R R+ WD ++++
Sbjct: 99 YPKINAPEPMDDEGRIITLEFPDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDYL 153
Query: 209 LQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
+ KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 154 HELDQQKPVIASGDFNVAHEEIDLAHP---------------ATNHHSAGFTDEERTHFS 198
Query: 268 AIL 270
+L
Sbjct: 199 KLL 201
>gi|148544314|ref|YP_001271684.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|184153692|ref|YP_001842033.1| exodeoxyribonuclease [Lactobacillus reuteri JCM 1112]
gi|227365036|ref|ZP_03849073.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|325681652|ref|ZP_08161172.1| exodeoxyribonuclease [Lactobacillus reuteri MM4-1A]
gi|148531348|gb|ABQ83347.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|183225036|dbj|BAG25553.1| exodeoxyribonuclease [Lactobacillus reuteri JCM 1112]
gi|227069924|gb|EEI08310.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|324978964|gb|EGC15911.1| exodeoxyribonuclease [Lactobacillus reuteri MM4-1A]
Length = 275
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 108/243 (44%), Gaps = 56/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNN------WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +S+ + E I PDVIA+QE ++ SK+ P
Sbjct: 1 MKFISWNIDSINAALTGTSVRAGETREVLKKIAVMKPDVIAIQETKL----SKNGPT--- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ L +++ L F NY++ W A YAGT L ++PK V+
Sbjct: 54 ----------KKHLTVLQEL----FPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPK-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
+ + +GR+I EF FY+ Y PN+G N +R R+ WD ++++
Sbjct: 99 YPKINAPEPMDDEGRIITLEFPDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDYL 153
Query: 209 LQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
+ KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 154 HELDQQKPVIASGDFNVAHEEIDLAHP---------------ATNHHSAGFTDEERTHFS 198
Query: 268 AIL 270
+L
Sbjct: 199 KLL 201
>gi|116873216|ref|YP_849997.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742094|emb|CAK21218.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 251
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 108/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E + D D+ LQE ++ +++ D
Sbjct: 1 MKLISWNVNGLRAAVKKGFLE---YFEEVDADIFCLQETKLQEG----------QIELDL 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA Y+ +W+ A K Y+GTA+ K +P V + L +
Sbjct: 48 KA-------------------YKDYWNYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I E++ KP++ C
Sbjct: 85 HDTEGRVITLEFEAFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYIKNLDKTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GF+ ER +F A L I F
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAGFIDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|207091978|ref|ZP_03239765.1| exodeoxyribonuclease [Helicobacter pylori HPKX_438_AG0C1]
Length = 250
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRISYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|154484298|ref|ZP_02026746.1| hypothetical protein EUBVEN_02011 [Eubacterium ventriosum ATCC
27560]
gi|149734775|gb|EDM50692.1| exodeoxyribonuclease III [Eubacterium ventriosum ATCC 27560]
Length = 251
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V F +F D D+ +QE +M
Sbjct: 1 MKLISWNVNGIRACVTKG---FMDFFNEIDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L P + Y W+ A+ K Y+GTA+ KK +P V + + +
Sbjct: 39 ---QEGQL----ELEMPGYYQY---WNYAEKKGYSGTAIFTKK--EPMDVKYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ + E R +W+ + ++ + KP++ C
Sbjct: 85 HDHEGRVITLEFEDFYMVTCYTPNS--QNELKRLDYRMQWEDDFKAYLKKLEESKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER++ +L + I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKMTKLLDDGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|15893514|ref|NP_346863.1| exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|337735433|ref|YP_004634880.1| exodeoxyribonuclease ExoA [Clostridium acetobutylicum DSM 1731]
gi|384456943|ref|YP_005669363.1| Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum EA 2018]
gi|15023055|gb|AAK78203.1|AE007535_5 Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|325507632|gb|ADZ19268.1| Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum EA 2018]
gi|336292303|gb|AEI33437.1| exodeoxyribonuclease (exoA) [Clostridium acetobutylicum DSM 1731]
Length = 250
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D DV LQE ++ +
Sbjct: 1 MKLISWNVNGLRACITKG---FLDYFKEVDADVFCLQETKIQEGQVE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + ++ W+ A+ K Y+GTA+ KK K +S+S K
Sbjct: 45 -------------LELPGYYDF---WNYAEKKGYSGTAIFTKK----KPISYSYGINEEK 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ KE+ + R +W+ + ++ KP+I C
Sbjct: 85 HDKEGRVITLEFEDFYMVTVYTPNS--KEKLARLEYRMEWEDSFRNYLKALDEKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+H EID+ +P K + GF+ ER +F +L+ I
Sbjct: 143 GDMNVAHTEIDLKNP---------------KTNTKNAGFSPEERSKFTELLEAGFI 183
>gi|323342310|ref|ZP_08082542.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463422|gb|EFY08616.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 252
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 111/236 (47%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K +F D DV+ LQE +M A
Sbjct: 2 MKLISWNVNGLRAVMK---KDFEGIFEAMDTDVLCLQETKMQAG---------------- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y +++ A+ K Y+GTA+ + +P V++ +++ +
Sbjct: 43 ------------QLDYDP-EGYYAYYNYAEKKGYSGTAVYTR--IKPLNVTYGIQED--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWC 219
+ +GRVI E++ F+L+ Y PN+ + E R +W+ +E++ + KP++ C
Sbjct: 86 HNTEGRVITCEYDDFFLVCVYTPNS--QPELKRIDYRMQWEDDFREYLKMLDETKPVVLC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P +A + N PGF+ ER++F +L I
Sbjct: 144 GDLNVAHKEIDLKNP---SANRKN------------PGFSDQEREQFTNLLDAGFI 184
>gi|330996654|ref|ZP_08320532.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
gi|329572726|gb|EGG54359.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
Length = 250
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F D D LQE +M
Sbjct: 1 MKFISWNVNGLRACCEKG---FKESFAALDADFFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F+ Y+ +W+ A+ K Y+GTA+ + P V++ L +
Sbjct: 39 ---QEGQLDL-------EFEGYRSYWNYAEKKGYSGTAIFSRHA--PLNVTYGL--GLEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI E F+L+ Y PN+ ++ R +W++ + ++LQ + KP+I C
Sbjct: 85 HDREGRVITLEMPDFFLVTVYTPNS--QDGLKRLDYRMQWEEAFRAYLLQLDTRKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H EID+ +P K + GFT ER++FG +L
Sbjct: 143 GDLNVAHREIDLKNP---------------KSNRKNAGFTDEEREKFGILL 178
>gi|384895292|ref|YP_005769281.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
gi|315585908|gb|ADU40289.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
Length = 250
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 107/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 40 -----------QDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420397741|ref|ZP_14896957.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
gi|393011286|gb|EJB12474.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
Length = 250
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 107/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 40 -----------QDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|421145619|ref|ZP_15605476.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
gi|395487984|gb|EJG08882.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
Length = 253
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLTVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K++ R W+ ++++ K ++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDKLLRLDYRMTWEDEFRKYLKNLEKKKAVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GFT ER +F +L I F
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420419486|ref|ZP_14918576.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
gi|393031392|gb|EJB32464.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
Length = 250
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|385222881|ref|YP_005772014.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
gi|317011660|gb|ADU85407.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
Length = 250
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|423335525|ref|ZP_17313300.1| unnamed protein product [Lactobacillus reuteri ATCC 53608]
gi|337728755|emb|CCC03874.1| unnamed protein product [Lactobacillus reuteri ATCC 53608]
Length = 275
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 108/243 (44%), Gaps = 56/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNN------WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +S+ + E I PDVIA+QE ++ SK+ P
Sbjct: 1 MKFISWNIDSINAALTGTSVRAGETREVLRKIAAMKPDVIAIQETKL----SKNGPT--- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ L +++ L F NY++ W A YAGT L ++PK V+
Sbjct: 54 ----------KKHLTVLQEL----FPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPK-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
+ + +GR+I EF FY+ Y PN+G N +R R+ WD ++++
Sbjct: 99 YPKINAPEPMDDEGRIITLEFPDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDYL 153
Query: 209 LQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
+ KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 154 RELDQQKPVIASGDFNVAHEEIDLAHP---------------ATNHHSAGFTDEERTHFS 198
Query: 268 AIL 270
+L
Sbjct: 199 KLL 201
>gi|336066887|ref|YP_004561745.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296833|dbj|BAK32704.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 251
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 111/236 (47%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K +F D DV+ LQE +M A
Sbjct: 1 MKLISWNVNGLRAVMK---KDFEGIFEAMDTDVLCLQETKMQAG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y +++ A+ K Y+GTA+ + +P V++ +++ +
Sbjct: 42 ------------QLDYDP-EGYYAYYNYAEKKGYSGTAVYTR--IKPLNVTYGIQED--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWC 219
+ +GRVI E++ F+L+ Y PN+ + E R +W+ +E++ + KP++ C
Sbjct: 85 HNTEGRVITCEYDDFFLVCVYTPNS--QPELKRIDYRMQWEDDFREYLKMLDETKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P +A + N PGF+ ER++F +L I
Sbjct: 143 GDLNVAHKEIDLKNP---SANRKN------------PGFSDQEREQFTNLLDAGFI 183
>gi|387783040|ref|YP_005793753.1| exodeoxyribonuclease [Helicobacter pylori 51]
gi|261838799|gb|ACX98565.1| exodeoxyribonuclease [Helicobacter pylori 51]
Length = 250
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|224137778|ref|XP_002322649.1| predicted protein [Populus trichocarpa]
gi|222867279|gb|EEF04410.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 111/232 (47%), Gaps = 46/232 (19%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
+ +K ++WN N L +K + DV+ LQE ++ A SKD Q L D
Sbjct: 165 NSVKLMSWNVNGLRALLKFEGFSALELAQRENFDVLCLQETKLQA--SKDVDSIKQCLID 222
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKT 157
+ S +W+ +++K Y+GTA++ + +P V + L
Sbjct: 223 GYENS---------------------FWTCSNAKLGYSGTAIVSR--IKPLSVCYGL--G 257
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPL 216
++ +GRV+ AEF++FYL+NTY PN+G + S+ R +WD + ++ + KP+
Sbjct: 258 IPDHDSEGRVVTAEFDSFYLVNTYVPNSGDGLKRLSY-RITQWDPSLSNYMKELEKSKPV 316
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
I GDLN +H+EID+ +P NK GFT ER+ FG+
Sbjct: 317 ILTGDLNCAHQEIDIFNP------------AGNKR---SAGFTEEERQSFGS 353
>gi|420484933|ref|ZP_14983551.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|420515427|ref|ZP_15013890.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|420517129|ref|ZP_15015584.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
gi|393103068|gb|EJC03631.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|393123726|gb|EJC24194.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|393124943|gb|EJC25409.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
Length = 250
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|373501432|ref|ZP_09591789.1| exodeoxyribonuclease [Prevotella micans F0438]
gi|371949088|gb|EHO66962.1| exodeoxyribonuclease [Prevotella micans F0438]
Length = 250
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 57/232 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V F TF D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRAVVGKG---FVESFETFGADFFCLQETKMQ-AGQLDI----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y+ +W+ A+ K Y+GTA+ K ++P V++ + +
Sbjct: 46 -----------------SFPGYESYWNYAEKKGYSGTAIFTK--YKPLSVTYGMNID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIW 218
++ +GR+I E E F+L+ Y PN+ ++ R +W+ ++ L C KP+I
Sbjct: 85 HDHEGRIITLEMEQFFLVTVYTPNS--QDGLRRLDYRMQWESDFLAYLTSLDCR-KPVIV 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
CGD+NV+HEEID+ +P+ N+ + GFT ER++ +L
Sbjct: 142 CGDMNVAHEEIDLKNPQ------------NNRRN---AGFTDEERQKMTTLL 178
>gi|326790354|ref|YP_004308175.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
gi|326541118|gb|ADZ82977.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
Length = 251
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 106/242 (43%), Gaps = 55/242 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + + F ++ D DV +QE T
Sbjct: 1 MKCVSWNVNGVRAVLTKG---FLDYFKAVDADVFCIQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
K + I + P + YQ W Y+GTAL KK +P VS+ L ++
Sbjct: 37 KCQEGQVEIEL-----PGY--YQYWNYAQKKGYSGTALFSKK--EPLSVSYGL--GIAEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AEFE Y++ Y PN + E R W+ + ++ + KP+I CG
Sbjct: 86 DTEGRVITAEFEEAYVVTVYTPNA--QNELARIDYRMAWEDAFKAYLKKLEENKPVIICG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FLC 278
DLNV+H+EID+ +P K + G GF+ ER +FG +L+ I F
Sbjct: 144 DLNVAHQEIDLKNP---------------KTNRGNAGFSDEERGKFGELLEAGFIDTFRY 188
Query: 279 FY 280
FY
Sbjct: 189 FY 190
>gi|421719100|ref|ZP_16158390.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
gi|407218577|gb|EKE88401.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
Length = 250
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|403335307|gb|EJY66828.1| Exodeoxyribonuclease III family protein [Oxytricha trifallax]
Length = 411
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 100/201 (49%), Gaps = 35/201 (17%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
KK + WN N L V+ N +F+ + P ++ + E++
Sbjct: 105 KKGHMSIWQWNINGLQAVVRKN--ALQDFLKNYQPLILCINELK---------------- 146
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLE 155
T + +L + + L KNY+ +W+ +K YAGT LL K +P KV+F L
Sbjct: 147 ---TDFDKINQLQIHKQLP----KNYEQYWNCCSTKKGYAGTGLLTK--IKPLKVTFGL- 196
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV---LQCS 212
K++ +GR++ AE++ F ++N+Y PN G+ E + R +WD+ + +++ S
Sbjct: 197 -GIEKHDTEGRIMTAEYDHFIVVNSYFPNTGFNFERIDY-RIDEWDEDVHDYIDHLRDTS 254
Query: 213 GKPLIWCGDLNVSHEEIDVSH 233
KP+I GDLN+ + E+D+ H
Sbjct: 255 KKPVILAGDLNIGNTELDIYH 275
>gi|420407656|ref|ZP_14906820.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
gi|393021114|gb|EJB22248.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
Length = 250
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|418962582|ref|ZP_13514438.1| putative exodeoxyribonuclease III [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|383345371|gb|EID23497.1| putative exodeoxyribonuclease III [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 275
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D DVIA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVGLDADVIAIQETKLSANG---PTKKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D+ F +Y+ W A YAGT L K+ PK ++
Sbjct: 58 KVLDEL------------------FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EFE F++ Y PN G + + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDAEGRIITLEFEKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTAL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DIEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
>gi|116511599|ref|YP_808815.1| exonuclease III [Lactococcus lactis subsp. cremoris SK11]
gi|116107253|gb|ABJ72393.1| Exonuclease III [Lactococcus lactis subsp. cremoris SK11]
Length = 285
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 106/253 (41%), Gaps = 55/253 (21%)
Query: 43 KFVTWNANSL--------------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK 88
KF++WN +SL L VKN + PDV+A+QE ++P+ G K
Sbjct: 4 KFISWNIDSLNAALTGTSERAALSLAVVKN--------LAQAQPDVLAIQETKLPSTGPK 55
Query: 89 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKC 144
K H E+ +D FK Y+I W A Y+GT +L K+
Sbjct: 56 ---KAHLEVLEDL------------------FKGYKIVWRSSVEPARKGYSGTMILYKET 94
Query: 145 FQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 204
++F + +GR+I EF F++ Y PN +E R WD
Sbjct: 95 LPEPVITFPEIDAPEPMDAEGRIITLEFPDFFVTTVYTPNA--QEGLTRLDLRGIWDDNY 152
Query: 205 QEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTI 260
+ ++ KP+ CGD N ++ EID+++P G+ +E +GQ GFT
Sbjct: 153 RNYLTSLDAQKPVFVCGDFNAAYTEIDLANPR--GNHNSAGFTDQEREKFGQLLEAGFTD 210
Query: 261 AERKRFGAILKEY 273
RK G + K Y
Sbjct: 211 TFRKLHGPVEKFY 223
>gi|352518551|ref|YP_004887868.1| exodeoxyribonuclease [Tetragenococcus halophilus NBRC 12172]
gi|348602658|dbj|BAK95704.1| exodeoxyribonuclease [Tetragenococcus halophilus NBRC 12172]
Length = 275
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 109/242 (45%), Gaps = 54/242 (22%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L +N + S + I +D DVIA+QE ++ A G
Sbjct: 1 MKLISWNIDSLNAALTSDSNRAQLSRDVLDTIAEYDADVIAIQETKLSANGPT------- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADS----KYAGTALLVKKCFQPKKVS 151
+K I + A P +Y+I W ++ YAGT L K +P ++
Sbjct: 54 -----------QKHIDILAERLP---DYEIAWRSSEEPARKSYAGTMFLYKNMLEPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF ++ Y PN G + ++R WD++ +E+++
Sbjct: 99 FPEIGAPDTMDQEGRIITLEFPNCFVTQVYTPNAGGNLDR--LEKREAWDEKYREYLVAL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPE--FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
KP+I GD NV+H EID++HP+ F+A GFT ER F
Sbjct: 157 DEQKPVIASGDYNVAHTEIDLAHPDRNHFSA-----------------GFTDEERTNFTT 199
Query: 269 IL 270
+L
Sbjct: 200 LL 201
>gi|306820340|ref|ZP_07453979.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|402309414|ref|ZP_10828407.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
gi|304551669|gb|EFM39621.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|400372381|gb|EJP25325.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
Length = 251
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 103/231 (44%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L + F FD D LQE+++
Sbjct: 1 MKFVSWNVNGLRAAREKG---FDEIFKNFDADFFCLQEIKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E I M Y +W+ A K Y+GTA+ + +P V + L K +
Sbjct: 39 ----QEGQIDM------DMDGYYSYWNYAKRKGYSGTAIFTR--IEPIDVFYGLGKE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GR+I E+ FY+ Y PN+ K+E R++W+ +EF K P+I C
Sbjct: 85 HDDEGRLITLEYPEFYVSTVYTPNS--KQELLRLDYRQEWEDEFREFFKNLDAKKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GD+NV+H+EID+ +P K + PGFT ER++F +L
Sbjct: 143 GDMNVAHKEIDLKNP---------------KTNRKNPGFTDEEREKFTLLL 178
>gi|420499520|ref|ZP_14998076.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
gi|393151722|gb|EJC52025.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
Length = 250
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|332800472|ref|YP_004461971.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|438003872|ref|YP_007273615.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|332698207|gb|AEE92664.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|432180666|emb|CCP27639.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
Length = 251
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + F + D D+ A+QE ++ + EL+
Sbjct: 1 MKAVSWNVNGLRACLGKG---FLEYFKDVDADIFAIQETKLQ--------EGQVELE--- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y+ +W+ A K Y+GTA+ K P V++ ++ +
Sbjct: 47 ------------------LEGYEQYWNYAVKKGYSGTAVFTK--ISPLSVAYGIDIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE FY +N Y PN+ + R KW+ +E++++ G KP+I C
Sbjct: 85 HDAEGRVITLEFENFYFVNVYVPNS--QRGLTRLDYRMKWEDDFREYLIKLDGIKPVICC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD NV+H+EID+ +P K + GFT ER++ +L I
Sbjct: 143 GDKNVAHQEIDLKNP---------------KSNRKNAGFTDEERQKMTELLNSGFI 183
>gi|323490286|ref|ZP_08095501.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
gi|323395956|gb|EGA88787.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
Length = 251
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 42/211 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K F +F T + DV LQE+++
Sbjct: 1 MKLISWNVNGLRAVMKKG---FMDFFTEVNADVFCLQEIKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E I M Y +W+ A K Y+GTA+ K+ +P V + L L
Sbjct: 39 ----QEGQIEM------DLPGYYTYWNYAHKKGYSGTAIFTKQ--KPVAVQYGLGLEEL- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+ +GR+I EF+++Y++ Y PN+ + R W++ I FV KP++ C
Sbjct: 86 -DTEGRIITLEFDSYYVITVYTPNS--QHGLLRLDYRLLWEEAILSFVKTLDNHKPVLLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNK 250
GDLNV+HEEID+ +P+ A K +G+ P +
Sbjct: 143 GDLNVAHEEIDLKNPK--ANKKNSGFTPEER 171
>gi|423076274|ref|ZP_17064987.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
gi|361852634|gb|EHL04857.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
Length = 250
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 106/238 (44%), Gaps = 59/238 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F D+ LQE ++
Sbjct: 1 MKLISWNVNGLRACLNKG---FMDFFQQEQADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+EE++ PF+ Y +W+ A K Y+GTA+ K+ +P VS+ + +
Sbjct: 39 ---QEEQI---------PFQLEGYHAYWNFAQKKGYSGTAVFAKQ--EPLSVSYGIGQE- 83
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+++ +GRVI EF+TFYL+ Y PN+ + + R W+ ++ KP+I
Sbjct: 84 -EHDQEGRVITLEFDTFYLVTVYTPNS--QRDLARLDYRMIWEAEFLGYLKNLEKSKPVI 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
CGDLNV+H EID+ +P K + GFT ER +F +LK I
Sbjct: 141 LCGDLNVAHTEIDLKNP---------------KTNRKNAGFTDEERAKFSELLKNGFI 183
>gi|254829588|ref|ZP_05234275.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284802226|ref|YP_003414091.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284995368|ref|YP_003417136.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|386054035|ref|YP_005971593.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
gi|258602005|gb|EEW15330.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284057788|gb|ADB68729.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284060835|gb|ADB71774.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|346646686|gb|AEO39311.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
Length = 251
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 106/243 (43%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MRLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 85 HDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDNTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GF+ ER +F A L I F
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAGFIDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420441204|ref|ZP_14940154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
gi|393054345|gb|EJB55274.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
Length = 250
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|194467701|ref|ZP_03073688.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
gi|194454737|gb|EDX43634.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
Length = 275
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 108/243 (44%), Gaps = 56/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNN------WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +S+ + E I PDVIA+QE ++ SK+ P
Sbjct: 1 MKFISWNIDSINAALTGTSVRAGETREVLQKIAAMKPDVIAIQETKL----SKNGPT--- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ L +++ L F NY++ W A YAGT L ++PK ++
Sbjct: 54 ----------KKHLTVLQEL----FPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPK-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
+ + +GR+I EF FY+ Y PN+G N +R R+ WD ++++
Sbjct: 99 YPKINAPEPMDDEGRIITLEFPDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDYL 153
Query: 209 LQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
+ KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 154 HELDQQKPVIASGDFNVAHEEIDLAHP---------------ATNHHSAGFTDEERTHFS 198
Query: 268 AIL 270
+L
Sbjct: 199 KLL 201
>gi|429766260|ref|ZP_19298534.1| exodeoxyribonuclease III [Clostridium celatum DSM 1785]
gi|429185240|gb|EKY26229.1| exodeoxyribonuclease III [Clostridium celatum DSM 1785]
Length = 250
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F +F + D+ +QE +
Sbjct: 1 MKLISWNVNGIRACVQKG---FLDFFNEVNADIFCIQESK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L + K Y +W+ A+ K Y+GTA+ KK +P V + L +
Sbjct: 38 ---------LQEGQINLELKGYHQYWNYAEKKGYSGTAIFTKK--EPLSVRYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R KW+ ++++ KP+I C
Sbjct: 85 HDKEGRVITLEFEDFFMITVYTPNS--QNELARLDYRMKWEDDFKKYLKHLEKSKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P N+++ GFT ER++ ++L + I F
Sbjct: 143 GDLNVAHKEIDLKNP------------TTNRKN---AGFTDEEREKLTSLLNDGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|414074005|ref|YP_006999222.1| Exodeoxyribonuclease III [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413973925|gb|AFW91389.1| Exodeoxyribonuclease III [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 296
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 106/253 (41%), Gaps = 55/253 (21%)
Query: 43 KFVTWNANSL--------------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK 88
KF++WN +SL L VKN + PDV+A+QE ++P+ G K
Sbjct: 15 KFISWNIDSLNAALTGTSERAALSLAVVKN--------LAQAQPDVLAIQETKLPSTGPK 66
Query: 89 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKC 144
A H E+ +D FK Y+I W A Y+GT +L K+
Sbjct: 67 KA---HLEVLEDL------------------FKGYKIVWRSSVEPARKGYSGTMILYKET 105
Query: 145 FQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 204
++F + +GR+I EF F++ Y PN +E R WD
Sbjct: 106 LPEPVITFPEIDAPEPMDAEGRIITLEFPDFFVTTVYTPNA--QEGLTRLDLRGIWDDNY 163
Query: 205 QEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTI 260
+ ++ KP+ CGD N ++ EID+++P G+ +E +GQ GFT
Sbjct: 164 RNYLTSLDAQKPVFVCGDFNAAYTEIDLANPR--GNHNSAGFTDQEREKFGQLLEAGFTD 221
Query: 261 AERKRFGAILKEY 273
RK G + K Y
Sbjct: 222 TFRKLHGPVEKFY 234
>gi|420531938|ref|ZP_15030309.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
gi|393135788|gb|EJC36183.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
Length = 250
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|348524661|ref|XP_003449841.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Oreochromis niloticus]
Length = 310
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 40/239 (16%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
+ ++ + +K +WN + L VK + +++ DPD++ LQE +
Sbjct: 46 TSKDGRNANMKITSWNVDGLRAWVKK---KGLDWVREEDPDILCLQETKCA--------- 93
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 151
EK + S P + ++ W + D + Y+G A+L K +P KV+
Sbjct: 94 --------------EKALPAEITSMPEYP-HKYWAASGDKEGYSGVAMLCKT--EPIKVT 136
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + K +++ +GRVI AEF +FYL+ Y PN R+ WD + ++ +
Sbjct: 137 YGIGKE--EHDKEGRVITAEFPSFYLVTAYVPNA--SRGLVRLDYRKTWDVDFRAYLSEL 192
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTIAERKRF 266
KPL+ CGDLNV+H+EID+ +P+ K G+ P +E + Q GF + R+ +
Sbjct: 193 DMQKPLVLCGDLNVAHQEIDLKNPK--GNKKNAGFTPEEREGFSQLLAAGFVDSFRELY 249
>gi|366086404|ref|ZP_09452889.1| exodeoxyribonuclease III [Lactobacillus zeae KCTC 3804]
Length = 252
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 104/237 (43%), Gaps = 57/237 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A K D P +Q
Sbjct: 1 MKLISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVKLDLPGYYQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGM--GIP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + + Q + KPL++
Sbjct: 84 EHDKEGRIITLEYPKFYLMTVYTPNSG--GELKRLDYRQQWDKDFRAYTNQLAEKKPLVY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
CGDLNV+HE ID+ + +K + GFT ER F LK I
Sbjct: 142 CGDLNVAHEPIDLKN---------------DKTNHHNAGFTDEERADFTKQLKSGFI 183
>gi|255523264|ref|ZP_05390235.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296186225|ref|ZP_06854630.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
gi|255513132|gb|EET89401.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296049493|gb|EFG88922.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
Length = 252
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + EF + D+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVTKGFLEF---FKEVNADIFCIQESKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L + Y +W+ A+ K Y+GTA+ KK K +SF+ +
Sbjct: 39 ---QEGQIEL-------ELEGYHQYWNYAERKGYSGTAIFTKK----KPLSFTYGIGIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K++ + R KW+ ++++ KP+I C
Sbjct: 85 HDKEGRVITLEFDDFYMVTVYTPNS--KDQLARLEYRMKWENDFRDYLKSLEKNKPVIMC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + GFT ER++F L I
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKFTEFLSAGFI 183
>gi|420461013|ref|ZP_14959808.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
gi|393074587|gb|EJB75346.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
Length = 250
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 109/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M QE
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM-----------QQEQ---- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 43 --------------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|346473687|gb|AEO36688.1| hypothetical protein [Amblyomma maculatum]
Length = 350
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 116/259 (44%), Gaps = 54/259 (20%)
Query: 21 PSKKDGETTETSSEENSKKDP--LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ 78
P K E+ E K P LK +WN N + + E+ + PD+ A+Q
Sbjct: 74 PKKSKSESGEPCDGGEGDKKPWNLKLCSWNVNGVRAWLGKEGLEY---LKKEQPDIFAIQ 130
Query: 79 EVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGT 137
E + D+K E K + + Y ++ D + Y+G
Sbjct: 131 ETKCS----------------DSKLPPEMKSV----------EGYHSYFLAGDQEGYSGV 164
Query: 138 ALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 197
ALL K +P V + + K++ +GRVI AEF+ FYL+ Y PN G K + R
Sbjct: 165 ALLAK--IKPLDVKYGIGME--KHDKEGRVITAEFDKFYLVAVYVPNAGKKLVRLDY--R 218
Query: 198 RKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 256
+WDK + ++ + K ++ CGD+NV+H+EID+++P+ NK++
Sbjct: 219 MEWDKDFRAYLKELEAKKHVVLCGDMNVAHQEIDLANPK------------TNKKN---A 263
Query: 257 GFTIAERKRFGAILKEYLI 275
GFT ER F A+L+ +
Sbjct: 264 GFTQEERDGFTALLESGFV 282
>gi|373115658|ref|ZP_09529827.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670180|gb|EHO35266.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
Length = 250
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 108/231 (46%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ VTWN N L + F +F D DV+ LQE ++
Sbjct: 1 MRLVTWNVNGLRACLGKG---FLDFFQRVDADVVCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ +++ AL P Y+++W+ A+ K Y+GTA+ + +P V+ + A
Sbjct: 39 ---QPDQI----ALELP---GYRLFWNSAEKKGYSGTAVFTR--VEPLSVTCGIGLDAHD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
+E GRVI AEF+ F+L+ Y PN + E R +W+ + ++++ K P++ C
Sbjct: 87 HE--GRVITAEFDGFFLVCCYTPNA--QNELARIDYRMQWEDDFRAYLMELDKKKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+HEEID+ +P K + G GF+ ER + +L
Sbjct: 143 GDLNVAHEEIDLKNP---------------KSNRGSAGFSDQERGKMTELL 178
>gi|384898191|ref|YP_005773619.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
gi|317013296|gb|ADU83904.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
Length = 250
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRISWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|385221296|ref|YP_005782768.1| exodeoxyribonuclease III [Helicobacter pylori India7]
gi|317010103|gb|ADU80683.1| exodeoxyribonuclease III [Helicobacter pylori India7]
Length = 250
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLVSWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFSKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|251794788|ref|YP_003009519.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
gi|247542414|gb|ACS99432.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
Length = 258
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 105/236 (44%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L V F ++ D D LQE ++
Sbjct: 1 MKFVSWNVNGLRASVNKG---FLDYFNEMDADFFCLQETKLQEG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ KL L A Y ++W A+ K Y+GTA+ K +P +S+ L +
Sbjct: 42 ----QIKLELGEA--------YHLFWHYAEKKGYSGTAIFTKH--KPLSISYGLGEE--D 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
+ +GRVI E+E FYL+ Y PN + + + R W++ + ++++ KP+I C
Sbjct: 86 EDTEGRVITLEYENFYLVTVYTPNA--RRDLSRLDFRLAWEEMFRGYLIKLDEHKPVIVC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H++ID+ + K + G GFT ER++ +L I
Sbjct: 144 GDLNVAHQDIDLKNA---------------KSNRGNSGFTDEEREKMTRLLDAGFI 184
>gi|421053769|ref|ZP_15516741.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|421061178|ref|ZP_15523542.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|421066246|ref|ZP_15527876.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
gi|421070869|ref|ZP_15531997.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392441646|gb|EIW19276.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|392447774|gb|EIW24993.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392450902|gb|EIW27905.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|392457143|gb|EIW33851.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
Length = 250
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T D D+ +QE +M H +
Sbjct: 1 MKLISWNVNGLRACLSKG---FEDFFNTADADIFCIQETKM-----------HPD----- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
E LI Y+ +W+ A K Y+GTA+ + P V++ L +
Sbjct: 42 --QAEIGLI-----------GYEKYWNSAVKKGYSGTAVFTR--IAPLSVTYGLNIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE F+L+N Y PN+ K E R +W+ + ++ KP+I C
Sbjct: 85 HDQEGRIITLEFEDFFLVNVYTPNS--KRELLRLDYRMRWEDEFRTYLTALDQSKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GD+NV+H+EID+ +P K + GFT ER + A+L+
Sbjct: 143 GDINVAHQEIDIKNP---------------KTNRRNAGFTDEERDKMTALLE 179
>gi|385838740|ref|YP_005876370.1| Exodeoxyribonuclease III [Lactococcus lactis subsp. cremoris A76]
gi|358749968|gb|AEU40947.1| Exodeoxyribonuclease III [Lactococcus lactis subsp. cremoris A76]
Length = 285
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 106/253 (41%), Gaps = 55/253 (21%)
Query: 43 KFVTWNANSL--------------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK 88
KF++WN +SL L VKN + PDV+A+QE ++P+ G K
Sbjct: 4 KFISWNIDSLNAALTGTSERAALSLAVVKN--------LAQAQPDVLAIQETKLPSTGPK 55
Query: 89 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKC 144
K H E+ +D FK Y+I W A Y+GT +L K+
Sbjct: 56 ---KAHLEVLEDL------------------FKGYKIVWRSSVEPARKGYSGTMILYKET 94
Query: 145 FQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 204
++F + +GR+I EF F++ Y PN +E R WD
Sbjct: 95 LPEPVITFPEIDAPEPMDAEGRIITLEFPDFFVTTVYTPNA--QEGLTRLDLRGIWDDNY 152
Query: 205 QEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTI 260
+ ++ KP+ CGD N ++ EID+++P G+ +E +GQ GFT
Sbjct: 153 RNYLTSLDAQKPVFVCGDFNAAYTEIDLANPR--GNHNSAGFTDQEREKFGQLLEAGFTD 210
Query: 261 AERKRFGAILKEY 273
RK G + K Y
Sbjct: 211 TFRKLHGPVEKFY 223
>gi|407718604|ref|YP_006796009.1| exodeoxyribonuclease III [Leuconostoc carnosum JB16]
gi|407242360|gb|AFT82010.1| exodeoxyribonuclease III [Leuconostoc carnosum JB16]
Length = 272
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKN-------NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
++F++WN +S+ V++ W ++ I + PDV A+QE ++ G
Sbjct: 1 MQFISWNIDSINAAVEHKSARGEMTWETLTH-IASRQPDVFAIQETKLKNTGM------- 52
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWW--SLADSKYAGTALLVKKCFQPKKVSF 152
TK E L F +Y+++W S A S Y+GT +L + +P V +
Sbjct: 53 ------TKKQAEAIANL--------FPDYELYWRSSTARSGYSGTMILSR--LKPISVDY 96
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVL 209
+ +GR+I EFE +++ Y PN+G +S R R WD + ++
Sbjct: 97 PSIGAPGDMDQEGRIITLEFENYFVSTVYTPNSG-----SSLVRLDDRGMWDNAYRAYIQ 151
Query: 210 QCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
KP+I+ GD+NV+HEEID+ +P K + GFT ER++F
Sbjct: 152 SLDDQKPVIFSGDMNVAHEEIDLKNP---------------KTNRHSAGFTDQEREKFSQ 196
Query: 269 ILK 271
+LK
Sbjct: 197 LLK 199
>gi|385840954|ref|YP_005864278.1| Exodeoxyribonuclease III [Lactobacillus salivarius CECT 5713]
gi|417787595|ref|ZP_12435278.1| exodeoxyribonuclease III [Lactobacillus salivarius NIAS840]
gi|417809656|ref|ZP_12456337.1| Exodeoxyribonuclease III [Lactobacillus salivarius GJ-24]
gi|418960898|ref|ZP_13512785.1| exodeoxyribonuclease III [Lactobacillus salivarius SMXD51]
gi|300215075|gb|ADJ79491.1| Exodeoxyribonuclease III [Lactobacillus salivarius CECT 5713]
gi|334307772|gb|EGL98758.1| exodeoxyribonuclease III [Lactobacillus salivarius NIAS840]
gi|335350580|gb|EGM52076.1| Exodeoxyribonuclease III [Lactobacillus salivarius GJ-24]
gi|380344565|gb|EIA32911.1| exodeoxyribonuclease III [Lactobacillus salivarius SMXD51]
Length = 275
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 103/241 (42%), Gaps = 52/241 (21%)
Query: 42 LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
+K ++WN +SL R K + + I +PD+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKQSREVLATIIDE-NPDIIAIQETKLSATGPT---KKH 56
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 150
Q + + F +Y+I W A YAGT L K P +
Sbjct: 57 Q------------------TILAEQFPDYEIAWRSSQEPARKGYAGTMFLYKNNLNPT-I 97
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
S+ + +GR+I EF+ FY+ Y PN G + R+ WD++ ++++
Sbjct: 98 SYPEIDAPEPMDSEGRIITLEFDNFYVTQVYTPNAG--DGLRRLAERQVWDEKYADYLVS 155
Query: 211 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
KPL+ GD NV+H+EID++HP + GFT ER F +
Sbjct: 156 LDQNKPLLSSGDFNVAHKEIDLAHP---------------GNNHHSAGFTDEERAGFTNL 200
Query: 270 L 270
L
Sbjct: 201 L 201
>gi|326693809|ref|ZP_08230814.1| exodeoxyribonuclease III [Leuconostoc argentinum KCTC 3773]
Length = 272
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 110/239 (46%), Gaps = 51/239 (21%)
Query: 42 LKFVTWNANSLLLRVKN-------NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
+ F++WN +S+ +++ W I PDV A+QE ++ A G
Sbjct: 1 MHFISWNIDSINAAIEHKSARGEMTWDVLQK-IAAQQPDVFAIQETKLKATG-------- 51
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSF 152
++++ +L + F +YQI+ + +D++ Y+GT +L + P V++
Sbjct: 52 --------LTKKQATVL-----AELFPDYQIYVNASDARSGYSGTMILTR--LTPLAVTY 96
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
+ + +GR+I EFE F++ Y PN+G R WD + ++
Sbjct: 97 PTIGAPGEMDLEGRIITLEFEDFFVSTVYTPNSG--SALARLADRGAWDDAYRAYISSLD 154
Query: 213 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I+ GD+NV+H+EID+ +P K + GFT ER++F A+L
Sbjct: 155 AQKPVIFSGDMNVAHQEIDLKNP---------------KTNHKSAGFTDQEREKFTALL 198
>gi|313885686|ref|ZP_07819435.1| exodeoxyribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
gi|312619051|gb|EFR30491.1| exodeoxyribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
Length = 275
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 107/243 (44%), Gaps = 56/243 (23%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L +N S I +PD+IA+QE ++ A G + H
Sbjct: 1 MKLISWNIDSLNAALTSDSNRALLSRDVLQTILNLNPDIIAIQETKLSAKGPT---QKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADS----KYAGTALLVKKCFQPKKVS 151
E+ D FK+Y + W ++ YAGT L K +PK V+
Sbjct: 58 EILADL------------------FKDYMVVWRSSEEPARKGYAGTMFLYKHDLEPK-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
F + + +GR+I EF+ FY+ Y PN G N+ +R R+ WD++ ++
Sbjct: 99 FPEIEAPSPMDAEGRMITLEFDDFYVTQVYTPNAG-----NALKRLADRQIWDQQYAAYL 153
Query: 209 LQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
K ++ GD NV+H EID++HPE + GFT ER F
Sbjct: 154 ASLDQDKIVLATGDFNVAHHEIDLAHPE---------------NNHHSAGFTDEERAGFT 198
Query: 268 AIL 270
+L
Sbjct: 199 QLL 201
>gi|229134542|ref|ZP_04263353.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
gi|228648935|gb|EEL04959.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
Length = 252
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 107/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+E+D+ +P K + PGF+ ER++F +L+ I
Sbjct: 144 GDLNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEAGFI 184
>gi|281491287|ref|YP_003353267.1| exodeoxyribonuclease III [Lactococcus lactis subsp. lactis KF147]
gi|281375028|gb|ADA64546.1| Exodeoxyribonuclease III [Lactococcus lactis subsp. lactis KF147]
Length = 334
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 107/253 (42%), Gaps = 55/253 (21%)
Query: 43 KFVTWNANSL--------------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK 88
KF++WN +SL L VKN + PDV+A+QE ++P+ G K
Sbjct: 53 KFISWNIDSLNAALTGTSERAALSLAVVKN--------LAQAQPDVLAIQETKLPSTGPK 104
Query: 89 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKC 144
A H E+ ++ FK Y+I W A Y+GT +L K+
Sbjct: 105 KA---HLEVLEEL------------------FKGYKIVWRSSVEPARKGYSGTMILYKET 143
Query: 145 FQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 204
++F + +GR+I EF F++ Y PN +E R WD
Sbjct: 144 LPEPVITFPEIDAPEPMDAEGRIITLEFPDFFVTTVYTPNA--QEGLTRLDLRGIWDDNY 201
Query: 205 QEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTI 260
+ ++ KP+ CGD N ++ EID+++P A G+ +E +GQ GFT
Sbjct: 202 RNYLTSLDAQKPVFACGDFNAAYTEIDLANPR--ANHNSAGFTDQEREKFGQLLEAGFTD 259
Query: 261 AERKRFGAILKEY 273
RK G + K Y
Sbjct: 260 TFRKLHGQVEKFY 272
>gi|47097522|ref|ZP_00235061.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|254914076|ref|ZP_05264088.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|254938390|ref|ZP_05270087.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|386044090|ref|YP_005962895.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|386047434|ref|YP_005965766.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|386050759|ref|YP_005968750.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404284278|ref|YP_006685175.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404411083|ref|YP_006696671.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|405758833|ref|YP_006688109.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
gi|47014105|gb|EAL05099.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|258611002|gb|EEW23610.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|293592096|gb|EFG00431.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|345534425|gb|AEO03866.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|345537324|gb|AEO06764.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|346424605|gb|AEO26130.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404230909|emb|CBY52313.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|404233780|emb|CBY55183.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404236715|emb|CBY58117.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
Length = 251
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 106/243 (43%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MRLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 85 HDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GF+ ER +F A L I F
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAGFIDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|336392108|ref|ZP_08573507.1| exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 257
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 106/233 (45%), Gaps = 55/233 (23%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
+ LKF++WN N L VK N F F D D +QE ++ A +
Sbjct: 2 NALKFISWNVNGLRAVVKKN---FMEFFEQQDADFFCIQETKLQAGQIE----------- 47
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
L+ P + Y W+ A+ K Y+GTA+ K +P V++ +
Sbjct: 48 ---------------LTLPGYYQY---WNYAERKGYSGTAIFTKH--EPLNVTYGM--GV 85
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLI 217
+++ +GR+I E++ FYLL Y PN+ K + + R W+ + ++ + K P+I
Sbjct: 86 AEHDQEGRLITLEYKDFYLLTCYTPNSQTKLKRLDY--RMSWEDAFRSYISTLNQKKPVI 143
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
+CGDLNV+HE ID+ + +K + GF+ ER +F +L
Sbjct: 144 FCGDLNVAHEPIDLKN---------------DKTNHHNAGFSDEERAKFSQLL 181
>gi|333394549|ref|ZP_08476368.1| exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
Length = 257
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 106/233 (45%), Gaps = 55/233 (23%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
+ LKF++WN N L VK N F F D D +QE ++ A +
Sbjct: 2 NALKFISWNVNGLRAVVKKN---FMEFFEQQDADFFCIQETKLQAGQIE----------- 47
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
L+ P + Y W+ A+ K Y+GTA+ K +P V++ +
Sbjct: 48 ---------------LTLPGYYQY---WNYAERKGYSGTAIFTKH--EPLNVTYGM--GV 85
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLI 217
+++ +GR+I E++ FYLL Y PN+ K + + R W+ + ++ + K P+I
Sbjct: 86 AEHDQEGRLITLEYKDFYLLTCYTPNSQTKLKRLDY--RMSWEDAFRSYISTLNQKKPVI 143
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
+CGDLNV+HE ID+ + +K + GF+ ER +F +L
Sbjct: 144 FCGDLNVAHEPIDLKN---------------DKTNHHNAGFSDEERAKFSQLL 181
>gi|299141239|ref|ZP_07034376.1| exodeoxyribonuclease III [Prevotella oris C735]
gi|298577199|gb|EFI49068.1| exodeoxyribonuclease III [Prevotella oris C735]
Length = 250
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 103/233 (44%), Gaps = 55/233 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +FS T + D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVGK---DFSQSFETLNADFFCLQETKMQ-AGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y +W+ AD K Y+GTA+ +K +P V++ + +
Sbjct: 46 -----------------QFPGYTSYWNYADKKGYSGTAIYARK--EPIAVTYGIGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E++ F+L+ Y PN ++ R W+ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEYDNFFLVTVYTPNA--QDGLRRLDYRMTWEDDFQAYLHRLDEQKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
GDLNV+H+EID+ +P K + GFT ER++ +L
Sbjct: 143 GDLNVAHQEIDLKNP---------------KSNRRNAGFTDEEREKMTQLLSH 180
>gi|210135690|ref|YP_002302129.1| exodeoxyribonuclease III [Helicobacter pylori P12]
gi|210133658|gb|ACJ08649.1| exodeoxyribonuclease [Helicobacter pylori P12]
Length = 250
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P V++ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVNYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|376316682|emb|CCG00067.1| exodeoxyribonuclease III [uncultured Flavobacteriia bacterium]
Length = 253
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 100/196 (51%), Gaps = 37/196 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V++N N + +K +F + DPDV+ +QE T
Sbjct: 1 MKIVSFNVNGIRAIMKK---DFHESLAMMDPDVLCIQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA ++ + AL P Y I+ + A K Y+GTA+L K+ K +S S + +
Sbjct: 37 KAQDDQ---VAEALK--PINGYHIFSNSAVKKGYSGTAILTKE----KPISVSYDINIEE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI AEF ++++ Y PN+G + ++ R+ WDK ++ KP+I C
Sbjct: 88 HDTEGRVICAEFSAYFVVTVYVPNSGSALKRLTY--RQTWDKAFLAYLKALEKKKPVIVC 145
Query: 220 GDLNVSHEEIDVSHPE 235
GDLNV+H +ID+++P+
Sbjct: 146 GDLNVAHRDIDLANPK 161
>gi|229168476|ref|ZP_04296199.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|423592321|ref|ZP_17568352.1| exodeoxyribonuclease [Bacillus cereus VD048]
gi|228614882|gb|EEK71984.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|401230563|gb|EJR37070.1| exodeoxyribonuclease [Bacillus cereus VD048]
Length = 252
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 107/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+E+D+ +P K + PGF+ ER++F +L+ I
Sbjct: 144 GDLNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEAGFI 184
>gi|421715896|ref|ZP_16155208.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
gi|407221794|gb|EKE91597.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
Length = 250
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQE---------------------S 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K +E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 37 KIQQEQ--------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|312381587|gb|EFR27301.1| hypothetical protein AND_06082 [Anopheles darlingi]
Length = 517
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 36/194 (18%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K +WN L V +FI PD++ LQE + +L D+ +
Sbjct: 25 KISSWNVAGLRSWVGKGG---LDFIEHEQPDILCLQETKC----------TEDQLPDEAR 71
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYE 162
K Y +W YAG A+ +K P VS+ L + +
Sbjct: 72 H----------------IKGYHPYWLCKPGGYAGVAIYSRK--MPIHVSYGLGDE--EQD 111
Query: 163 PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 221
DGR++ AE+E FYL+ Y PN G K + +R +WD++ +++ + S KP+I CGD
Sbjct: 112 QDGRLLTAEYEKFYLVCVYVPNAGNKLV--TLPKRMRWDEKFHQYLRELDSKKPVILCGD 169
Query: 222 LNVSHEEIDVSHPE 235
+NV+HEEID+++P+
Sbjct: 170 MNVAHEEIDLANPK 183
>gi|423669305|ref|ZP_17644334.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|423674566|ref|ZP_17649505.1| exodeoxyribonuclease [Bacillus cereus VDM062]
gi|401298432|gb|EJS04032.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|401310117|gb|EJS15450.1| exodeoxyribonuclease [Bacillus cereus VDM062]
Length = 252
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 107/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEKSNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+E+D+ +P K + PGF+ ER++F +L+ I
Sbjct: 144 GDLNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEAGFI 184
>gi|392960130|ref|ZP_10325603.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
gi|392455642|gb|EIW32426.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
Length = 250
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T D D+ +QE +M H +
Sbjct: 1 MKLISWNVNGLRACLSKG---FEDFFNTADADIFCIQETKM-----------HPD----- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
E LI Y+ +W+ A K Y+GTA+ + P V++ L +
Sbjct: 42 --QAEIGLI-----------GYEKYWNSAVKKGYSGTAVFTR--ITPLSVTYGLNIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE F+L+N Y PN+ K E R +W+ + ++ KP+I C
Sbjct: 85 HDQEGRIITLEFEDFFLVNVYTPNS--KRELLRLDYRMRWEDEFRTYLTALDQSKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GD+NV+H+EID+ +P K + GFT ER + A+L+
Sbjct: 143 GDINVAHQEIDIKNP---------------KTNRRNAGFTDEERDKMTALLE 179
>gi|385229195|ref|YP_005789128.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
gi|344335633|gb|AEN16077.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
Length = 250
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRIITCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|425790226|ref|YP_007018143.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
gi|425628541|gb|AFX89081.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
Length = 250
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMGWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLDAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|344942649|ref|ZP_08781936.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
gi|344259936|gb|EGW20208.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
Length = 254
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 98/199 (49%), Gaps = 43/199 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + F+ + D D I LQE T
Sbjct: 1 MKIISWNVNGVRAVQSKG---FAETLALLDADCILLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA ++ + +AL Y+++ + A+ K Y+G +L +K +P +V + ++
Sbjct: 37 KAQADQ---IDKALEG--IDGYRVYSNCAERKGYSGVTILSRK--EPLQVISDI--GIVE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG----KPL 216
++ +GRVI+AEFE F+LLN Y PN+G E R+ WD EF+ C KPL
Sbjct: 88 HDREGRVIVAEFENFFLLNVYVPNSG--EALARLDYRQTWDI---EFLAYCRQLQKKKPL 142
Query: 217 IWCGDLNVSHEEIDVSHPE 235
I CGD NV+H+EID++ P+
Sbjct: 143 IACGDFNVAHQEIDIARPK 161
>gi|386753431|ref|YP_006226650.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|386754997|ref|YP_006228215.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
gi|384559689|gb|AFI00157.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|384561255|gb|AFI01722.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
Length = 250
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 107/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 40 -----------QDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|422339748|ref|ZP_16420705.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355370591|gb|EHG17971.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 253
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ + G D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SEGQLDLE---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 47 ------------------LKGYYQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K P++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER +F +L I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|229061336|ref|ZP_04198683.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|423511766|ref|ZP_17488297.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
gi|228717951|gb|EEL69596.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|402450027|gb|EJV81861.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
Length = 252
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 107/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+E+D+ +P K + PGF+ ER++F +L+ I
Sbjct: 144 GDLNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEAGFI 184
>gi|229816298|ref|ZP_04446607.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
gi|229808149|gb|EEP43942.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
Length = 280
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 104/251 (41%), Gaps = 72/251 (28%)
Query: 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKD 99
LK +WN N L +K + P F++ + D D++ LQE ++ + D P HQ
Sbjct: 8 ALKLASWNVNGLRAVLKKD-PSFTDIVAELDADILGLQETKLQEGQVELDLPGYHQV--- 63
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS----- 153
WS A+ K Y+GTA+ ++ +P V +
Sbjct: 64 ---------------------------WSYAERKGYSGTAVFCRE--EPLSVRHADAVLA 94
Query: 154 -----------LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDK 202
LE A+ +GRV EFE F+ ++ Y PN + E R WD
Sbjct: 95 AGRAAGLSDDELELVAVA-ATEGRVCALEFERFWFVDVYTPNA--QGELARLSTRMAWDD 151
Query: 203 RIQEFVLQC---SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 259
+ F+ +GKP++ CGD NV+H EID+ +P K + G GF+
Sbjct: 152 AYRAFLRSLEDETGKPVVTCGDFNVAHNEIDLKNP---------------KSNRGNAGFS 196
Query: 260 IAERKRFGAIL 270
ER +FG +L
Sbjct: 197 DEERAKFGELL 207
>gi|365854004|ref|ZP_09394256.1| exodeoxyribonuclease III [Lactobacillus parafarraginis F0439]
gi|363711540|gb|EHL95270.1| exodeoxyribonuclease III [Lactobacillus parafarraginis F0439]
Length = 250
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 42/197 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N L VK +F+ D D ++QE +M + D P HQ
Sbjct: 1 MKFISWNVNGLRAVVKK---DFAATFNKLDADFFSIQETKMQEGQLELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTAL K+ +P V + ++
Sbjct: 53 -------------------------YFNYAERKGYSGTALFAKQ--EPMSVMYGIQSDEF 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
+E GR I E+ FYL+ +Y PN+G + F R WD Q+++ + KP+I
Sbjct: 86 DHE--GRAITLEYPDFYLVTSYVPNSGAGLKRLDF--RMGWDAAFQDYLSRLDKEKPVIL 141
Query: 219 CGDLNVSHEEIDVSHPE 235
CGDLNV+H+ ID+ +P+
Sbjct: 142 CGDLNVAHKTIDLKNPQ 158
>gi|47087383|ref|NP_998586.1| DNA-(apurinic or apyrimidinic site) lyase [Danio rerio]
gi|33416367|gb|AAH55545.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Danio rerio]
Length = 310
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 115/243 (47%), Gaps = 42/243 (17%)
Query: 30 ETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKD 89
E + ++ + +K +WN + L VK N +++ DPD++ LQE
Sbjct: 43 EKLTSKDGRAANMKITSWNVDGLRAWVKKNG---LDWVRKEDPDILCLQE---------- 89
Query: 90 APKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQP 147
TK + + + A+ P K +W+ ++ K Y+G A+L K +P
Sbjct: 90 -----------TKCAEKALPADITAMPEYPHK----YWAGSEDKEGYSGVAMLCKT--EP 132
Query: 148 KKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF 207
V++ + K +++ +GRVI AEF F+L+ Y PN R+ WD + +
Sbjct: 133 LNVTYGIGKE--EHDKEGRVITAEFPDFFLVTAYVPNA--SRGLVRLDYRKTWDVDFRAY 188
Query: 208 VLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTIAER 263
+ KPL+ CGDLNV+H+EID+ +P+ K G+ P +E + Q GFT + R
Sbjct: 189 LCGLDARKPLVLCGDLNVAHQEIDLKNPK--GNRKNAGFTPEEREGFTQLLEAGFTDSFR 246
Query: 264 KRF 266
+ +
Sbjct: 247 ELY 249
>gi|354806768|ref|ZP_09040248.1| exodeoxyribonuclease III [Lactobacillus curvatus CRL 705]
gi|354514743|gb|EHE86710.1| exodeoxyribonuclease III [Lactobacillus curvatus CRL 705]
Length = 254
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 63/235 (26%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSK-DAPKNHQEL 97
+KF++WN N L +K +F+TTF D D LQE +M A + D P HQ
Sbjct: 1 MKFISWNVNGLRAVLK------KDFMTTFNQLDADFFCLQETKMQAGQVELDLPGYHQ-- 52
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK 156
+++ A+ K Y+GTA+ K +P ++ + +
Sbjct: 53 ----------------------------YFNYAEKKGYSGTAIFTKH--KPLTATYGIGQ 82
Query: 157 TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KP 215
+++ +GRVI E+ TFYL+ Y PN+ +++ R +W+ Q ++ S KP
Sbjct: 83 P--EHDQEGRVITLEYPTFYLITCYTPNS--QDKLKRLDYRMRWENAFQTYIADLSTQKP 138
Query: 216 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
+I+CGDLNV+HE ID+ + +K + GF+ ER + +L
Sbjct: 139 VIFCGDLNVAHEPIDLKN---------------DKTNHHNAGFSDEERGQMTTLL 178
>gi|325846697|ref|ZP_08169612.1| exodeoxyribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481455|gb|EGC84496.1| exodeoxyribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 275
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 106/244 (43%), Gaps = 48/244 (19%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L +N + S + I D D+I LQE ++P G
Sbjct: 1 MKIISWNIDSLNAALTSDSNRAKMSRDVLDTIIKEDADIICLQETKLPRTG--------- 51
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSF 152
S++ K IL S P NY W S A YAG KK F+P +S+
Sbjct: 52 -------PSKKHKQILE---SYFPQYNYA-WISSQEPARKSYAGCLTFYKKEFEPI-ISY 99
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
+ + R+I EF+ FYL Y PN G + R+ WDK+ ++ +
Sbjct: 100 PTLDAPDTMDQEARIITLEFDNFYLTQVYTPNAG--SGLSRLDLRQVWDKKYANYLEKLD 157
Query: 213 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP+I CGD NV+H+EID+ HPE + GFT ER F +L
Sbjct: 158 QNKPVIACGDFNVAHKEIDLKHPE---------------NNHKSAGFTDEERSGFTNLLN 202
Query: 272 EYLI 275
+ +
Sbjct: 203 KGFV 206
>gi|420489725|ref|ZP_14988317.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|420523659|ref|ZP_15022077.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
gi|393105146|gb|EJC05697.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|393126008|gb|EJC26460.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
Length = 250
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSINADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|317501545|ref|ZP_07959741.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088593|ref|ZP_08337504.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336440482|ref|ZP_08620069.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
gi|316897056|gb|EFV19131.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407550|gb|EGG87050.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336012927|gb|EGN42818.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
Length = 250
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 108/244 (44%), Gaps = 59/244 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KFV+WN N + V+ F +F T D D+ +QE +M + D P HQ
Sbjct: 1 MKFVSWNVNGIRACVQKG---FLDFFTEADADIFCIQESKMQEGQLELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A K Y+GTA+ KK +P V++ +
Sbjct: 53 -------------------------YWNYAVKKGYSGTAVFTKK--EPLSVTYGI--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+++ +GRVI EFE FY + Y PN+ + E R +W+ + ++ + KP+I
Sbjct: 84 EHDQEGRVITCEFEDFYFVTVYTPNS--QNELARLDYRMRWEDDFRMYLKKLEEKKPVIV 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--F 276
GD+NV+H+EID+ +P K + GFT ER +F +L I F
Sbjct: 142 TGDMNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTELLDAGFIDTF 186
Query: 277 LCFY 280
FY
Sbjct: 187 RYFY 190
>gi|281423696|ref|ZP_06254609.1| exodeoxyribonuclease III [Prevotella oris F0302]
gi|281402248|gb|EFB33079.1| exodeoxyribonuclease III [Prevotella oris F0302]
Length = 250
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 102/233 (43%), Gaps = 55/233 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +FS T + D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVG---KDFSQSFETLNADFFCLQETKMQ-AGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y +W+ AD K Y+GTA+ +K +P V++ + +
Sbjct: 46 -----------------QFPGYTSYWNYADKKGYSGTAIYARK--EPIAVTYGIGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E++ F+L+ Y PN ++ R W+ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEYDNFFLVTVYTPNA--QDGLRRLDYRMTWEDDFQAYLHRLDEQKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
GDLNV+H+EID+ +P K + GFT ER + +L
Sbjct: 143 GDLNVAHQEIDLKNP---------------KSNRRNAGFTDEERDKMTQLLSH 180
>gi|404413860|ref|YP_006699447.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|404239559|emb|CBY60960.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|441474667|emb|CCQ24421.1| Exodeoxyribonuclease [Listeria monocytogenes N53-1]
Length = 251
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 106/243 (43%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MRLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 85 HDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GF+ ER +F A L I F
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAGFIDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|300362647|ref|ZP_07058823.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
gi|300353638|gb|EFJ69510.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
Length = 275
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 106/241 (43%), Gaps = 50/241 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ N I DPD+IA+QE ++ A G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSARAKLTRGVLNTIKEKDPDIIAIQETKLRATG---PTKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADS----KYAGTALLVKKCFQPKKVS 151
E+ L M F +Y W ++ YAGT L K P+ V+
Sbjct: 58 EI-----------LAEM-------FPDYDYVWRSSEEPARKGYAGTMFLYKNTLTPE-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR++ EF+ +Y+ Y PN+G E R+ WD++ E++ +
Sbjct: 99 KPVIGAPEPMDHEGRILTLEFDNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H ID+ HPE + GFT ER+ F +L
Sbjct: 157 DQVKPVIASGDYNVAHTPIDLKHPE---------------NNHHNAGFTDEERQDFDKLL 201
Query: 271 K 271
K
Sbjct: 202 K 202
>gi|187933475|ref|YP_001885926.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
gi|187721628|gb|ACD22849.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
Length = 251
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 55/235 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L VK F + + + D+ +QE ++ QE + D
Sbjct: 3 KLISWNVNGLRACVKKG---FIDILKESNADIFCVQESKL------------QEGQIDLN 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y +W+ A+ K Y+GTA+ K+ K ++ SL ++
Sbjct: 48 -----------------LEGYYDYWNYAEKKGYSGTAVFSKE----KPLNISLGIGIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRV+ EFE FYL+N Y PN+ +++ R W+ + ++ + + KP+I CG
Sbjct: 87 DKEGRVLTLEFEEFYLVNVYTPNS--QQKLARIDYRMAWENDFRSYLNELNKAKPVIVCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
DLNV+H+EID+ +P K + GF+ ER++FG +LK I
Sbjct: 145 DLNVAHKEIDLKNP---------------KNNRNNAGFSDEEREKFGELLKSGFI 184
>gi|383862977|ref|XP_003706959.1| PREDICTED: recombination repair protein 1-like [Megachile
rotundata]
Length = 336
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 99/198 (50%), Gaps = 42/198 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN + + +K + E+ I D D++ALQE + D
Sbjct: 84 LKISSWNVSGIRALIKKSGMEY---IMKEDADIVALQETKC----------------DKN 124
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK---YAGTALLVKKCFQPKKVSFSLEKTA 158
K E KL K Y ++ DSK Y G AL K+ +P + + L+ +
Sbjct: 125 KLPEEVKL-----------KGYHHYF--LDSKKAGYCGVALYTKQ--KPIDIQYGLKNS- 168
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+++ +GR+I AE+ FY LN Y PN G K + +R +W++ + +V Q KP+I
Sbjct: 169 -EFDDEGRLITAEYPNFYFLNVYVPNAGQKLV--TLPKRLQWNEAFKSYVKQLDEKKPVI 225
Query: 218 WCGDLNVSHEEIDVSHPE 235
CGD+NV+H+EID+++P+
Sbjct: 226 ICGDMNVAHQEIDLTNPK 243
>gi|385230800|ref|YP_005790716.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
gi|344337238|gb|AEN19199.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
Length = 250
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|254854529|ref|ZP_05243877.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
gi|258607929|gb|EEW20537.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
Length = 251
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 105/243 (43%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGF--GVPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 85 HDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HEEID+ +P K + GF+ ER +F A L I F
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAGFIDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|162329921|pdb|2O3C|A Chain A, Crystal Structure Of Zebrafish Ape
gi|162329922|pdb|2O3C|B Chain B, Crystal Structure Of Zebrafish Ape
gi|162329923|pdb|2O3C|C Chain C, Crystal Structure Of Zebrafish Ape
Length = 282
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 115/243 (47%), Gaps = 42/243 (17%)
Query: 30 ETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKD 89
E + ++ + +K +WN + L VK N +++ DPD++ LQE + K
Sbjct: 15 EKLTSKDGRAANMKITSWNVDGLRAWVKKNG---LDWVRKEDPDILCLQETK---CAEKA 68
Query: 90 APKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQP 147
P + + A+ P K +W+ ++ K Y+G A+L K +P
Sbjct: 69 LPAD------------------ITAMPEYPHK----YWAGSEDKEGYSGVAMLCKT--EP 104
Query: 148 KKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF 207
V++ + K +++ +GRVI AEF F+L+ Y PN R+ WD + +
Sbjct: 105 LNVTYGIGKE--EHDKEGRVITAEFPDFFLVTAYVPNA--SRGLVRLDYRKTWDVDFRAY 160
Query: 208 VLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTIAER 263
+ KPL+ CGDLNV+H+EID+ +P+ K G+ P +E + Q GFT + R
Sbjct: 161 LCGLDARKPLVLCGDLNVAHQEIDLKNPK--GNRKNAGFTPEEREGFTQLLEAGFTDSFR 218
Query: 264 KRF 266
+ +
Sbjct: 219 ELY 221
>gi|423488860|ref|ZP_17465542.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
gi|423494585|ref|ZP_17471229.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|423498625|ref|ZP_17475242.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|401151646|gb|EJQ59092.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|401159283|gb|EJQ66668.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|402433215|gb|EJV65269.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
Length = 252
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + + K +++C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLNEKKSVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F L+E +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRTLEEGFV 184
>gi|307212268|gb|EFN88076.1| Recombination repair protein 1 [Harpegnathos saltator]
Length = 327
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 36/195 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK TWN + + +K N ++ I D D+IALQE + G P D+
Sbjct: 75 LKICTWNVSGIRAVIKKNGLDY---IAKEDADIIALQETK---CGKDKMP-------DEI 121
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
K S + + S Y G AL K+ +P V + L + +
Sbjct: 122 KLSGY----------------HHYFLDSKQSGYCGVALFCKE--KPVSVKYGLNNS--NF 161
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GR+I AEF F+++N Y PN G K + +R +W+K ++++ + KP+I CG
Sbjct: 162 DSEGRIIAAEFPEFFMVNVYVPNAGQKLV--TLPKRLEWNKIFKKYIEELDQKKPVIICG 219
Query: 221 DLNVSHEEIDVSHPE 235
D+NV+H+EID+ +P+
Sbjct: 220 DMNVAHQEIDLKNPK 234
>gi|385227690|ref|YP_005787614.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
gi|344332603|gb|AEN17633.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
Length = 250
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLVSWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCALKKGYSGVVTFSKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|163941424|ref|YP_001646308.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|229012920|ref|ZP_04170085.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|423661424|ref|ZP_17636593.1| exodeoxyribonuclease [Bacillus cereus VDM022]
gi|163863621|gb|ABY44680.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|228748174|gb|EEL98034.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|401301465|gb|EJS07054.1| exodeoxyribonuclease [Bacillus cereus VDM022]
Length = 252
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + + K +++C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLNEKKSVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F L+E +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRTLEEGFV 184
>gi|153815015|ref|ZP_01967683.1| hypothetical protein RUMTOR_01232 [Ruminococcus torques ATCC 27756]
gi|145847583|gb|EDK24501.1| exodeoxyribonuclease III [Ruminococcus torques ATCC 27756]
Length = 252
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 108/244 (44%), Gaps = 59/244 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KFV+WN N + V+ F +F T D D+ +QE +M + D P HQ
Sbjct: 3 MKFVSWNVNGIRACVQKG---FLDFFTEADADIFCIQESKMQEGQLELDLPGYHQ----- 54
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A K Y+GTA+ KK +P V++ +
Sbjct: 55 -------------------------YWNYAVKKGYSGTAVFTKK--EPLSVTYGI--GIE 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+++ +GRVI EFE FY + Y PN+ + E R +W+ + ++ + KP+I
Sbjct: 86 EHDQEGRVITCEFEDFYFVTVYTPNS--QNELARLDYRMRWEDDFRMYLKKLEEKKPVIV 143
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--F 276
GD+NV+H+EID+ +P K + GFT ER +F +L I F
Sbjct: 144 TGDMNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTELLDAGFIDTF 188
Query: 277 LCFY 280
FY
Sbjct: 189 RYFY 192
>gi|116333326|ref|YP_794853.1| exonuclease III [Lactobacillus brevis ATCC 367]
gi|116098673|gb|ABJ63822.1| Exonuclease III [Lactobacillus brevis ATCC 367]
Length = 254
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 103/234 (44%), Gaps = 61/234 (26%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNHQELK 98
+KF++WN N L VK F+ TF + D +QE ++ A +
Sbjct: 1 MKFISWNVNGLRAIVK------KGFVETFQELNADFFGIQETKLQAGQIE---------- 44
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT 157
L P + Y W+ A+ K Y+GTAL K QP V + ++
Sbjct: 45 ----------------LDLPGYYQY---WNYAERKGYSGTALFTKH--QPLNVIYGID-- 81
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPL 216
A +++ +GR I E+ FY+L Y PN+G + F R W+ F+ + KP+
Sbjct: 82 APEFDHEGRAITLEYPDFYVLTCYTPNSGSGLKRLDF--RLGWEHAFLTFIQKLDAQKPV 139
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
I+CGDLNV+H EID+ +P K + GFT ER + A+L
Sbjct: 140 IFCGDLNVAHTEIDLKNP---------------KTNHHNAGFTDEERAKMTALL 178
>gi|420433080|ref|ZP_14932089.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|420508405|ref|ZP_15006911.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|420510180|ref|ZP_15008676.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|420532271|ref|ZP_15030634.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|420535643|ref|ZP_15033985.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|420537346|ref|ZP_15035676.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|420540833|ref|ZP_15039141.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|420543901|ref|ZP_15042190.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
gi|393051948|gb|EJB52898.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|393115197|gb|EJC15708.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|393116707|gb|EJC17212.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|393139902|gb|EJC40275.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|393143291|gb|EJC43635.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|393144901|gb|EJC45232.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|393147453|gb|EJC47777.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|393158898|gb|EJC59154.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
Length = 250
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M QE
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM-----------QQEQ---- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 43 --------------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|302783529|ref|XP_002973537.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
gi|300158575|gb|EFJ25197.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
Length = 306
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 106/208 (50%), Gaps = 38/208 (18%)
Query: 37 SKKDPLKFVTWNANSL--LLRVKNNWPE----FSNFITTFDPDVIALQEVRMPAAGSKDA 90
S+K+ +K ++WN N L ++ KN E + + D DV+ LQE ++ KD
Sbjct: 33 SEKNLVKVISWNVNGLRACMKRKNELEEEGSALARLADSEDFDVLCLQETKLQ---EKDV 89
Query: 91 PKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPK 148
Q++ S +W+ + SK Y+G AL+ + +P
Sbjct: 90 EAIKQKILGGYSNS---------------------FWTCSTSKLGYSGCALISR--IKPL 126
Query: 149 KVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV 208
V++ L + +++ +GRV+ AEF+TF+L++ Y PN+G + E ++ R +WD ++
Sbjct: 127 SVTYGLGIS--QHDGEGRVVTAEFDTFFLVSVYVPNSGQRLERLTY-RTTEWDPAFSTYL 183
Query: 209 LQCSG-KPLIWCGDLNVSHEEIDVSHPE 235
L+ KP+I GDLN +HEEID+ P+
Sbjct: 184 LELEKRKPVIVTGDLNCAHEEIDIYDPD 211
>gi|420411264|ref|ZP_14910396.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
gi|393030053|gb|EJB31132.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
Length = 250
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKTLELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420469789|ref|ZP_14968500.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
gi|393086835|gb|EJB87505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
Length = 250
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420417863|ref|ZP_14916958.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
gi|393031044|gb|EJB32117.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
Length = 250
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 112/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEMEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|213512198|ref|NP_001135227.1| DNA-(apurinic or apyrimidinic site) lyase [Salmo salar]
gi|197631957|gb|ACH70702.1| APEX nuclease 1 [Salmo salar]
gi|209154634|gb|ACI33549.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
gi|209154684|gb|ACI33574.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
Length = 312
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 52/232 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +WN + L VK + +++ PDV+ LQE +
Sbjct: 57 MKITSWNVDGLRAWVKK---KGLDWVRDEAPDVLCLQETKCA------------------ 95
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 159
EK + S P F + +W+ +D K Y+G A+L K +P KV++ + K
Sbjct: 96 -----EKSLPDEITSMPEFPHK--YWAGSDEKEGYSGVAMLCKT--EPLKVTYGIGKE-- 144
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
+++ +GRVI AEF TF+L+ Y PN+G R+ WD + ++ KPL+
Sbjct: 145 EHDKEGRVITAEFPTFFLVTAYVPNSG--RGLVRLDYRKTWDVEFKAYLSDLDKRKPLVL 202
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
CGDLNV+HEEID+ + +K + GFT ER+ F +L
Sbjct: 203 CGDLNVAHEEIDLKN---------------SKGNKKNAGFTAEEREGFNQLL 239
>gi|432942682|ref|XP_004083031.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Oryzias latipes]
Length = 298
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 95/174 (54%), Gaps = 18/174 (10%)
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEK 156
D+TK + ++ + ++ P K +W+++D K Y+G A+L K +P KV++ + K
Sbjct: 76 DETKCAEKDLPAEITSMPEYPHK----YWAVSDDKEGYSGVAMLSKT--EPLKVTYGIGK 129
Query: 157 TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKP 215
+++ +GRVI AEF TF+L+ Y PN R+ WD Q ++ + KP
Sbjct: 130 E--EHDKEGRVITAEFPTFFLVTAYVPNA--SRGLVRLDYRKTWDVDFQAYLTELDVQKP 185
Query: 216 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTIAERKRF 266
L+ CGDLNV+H+EID+ +P+ K G+ P +E + Q GF + R+ +
Sbjct: 186 LVLCGDLNVAHQEIDLKNPK--GNKKNAGFTPEEREGFSQLLAAGFVDSFRELY 237
>gi|420481469|ref|ZP_14980108.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|420510358|ref|ZP_15008848.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
gi|393094477|gb|EJB95086.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|393122099|gb|EJC22576.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
Length = 250
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420451071|ref|ZP_14949925.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
gi|393065003|gb|EJB65833.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
Length = 250
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKTLELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|335031457|ref|ZP_08524893.1| exodeoxyribonuclease III [Streptococcus anginosus SK52 = DSM 20563]
gi|333769561|gb|EGL46670.1| exodeoxyribonuclease III [Streptococcus anginosus SK52 = DSM 20563]
Length = 275
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVRLDADIIAIQETKLSANG---PTKKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D+ F +Y+ W A YAGT L K+ PK ++
Sbjct: 58 KVLDEL------------------FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EFE F++ Y PN G + + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDAEGRIITLEFEKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTAL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DIEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
>gi|283769444|ref|ZP_06342342.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
gi|283103969|gb|EFC05354.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
Length = 251
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L +K F F D DV ALQE +M A
Sbjct: 1 MKFVSWNVNGLRAVMKKG---FKEFFERVDADVFALQETKMQAD---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ S F+ Y + + A+ K Y+GT + K+ +P V + +E
Sbjct: 42 -----------QITSEMEFEGYYRYMNSAERKGYSGTMVYCKE--EPISVQYDIEGDT-- 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+GRVI E+ +Y + Y PN+ KE R +W+ R+++ + + KP+I+
Sbjct: 87 -SMEGRVITLEYPNYYFVTAYVPNS--KEGLARLGFRMEWEDRLRDHLNRLKEVKPVIYT 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+HEEID+ +P+ + PGF+ ER++ +L + I
Sbjct: 144 GDLNVAHEEIDLKNPQ---------------SNHKNPGFSDEERQKMTELLADGYI 184
>gi|238853021|ref|ZP_04643416.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
gi|238834359|gb|EEQ26601.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
Length = 275
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 106/241 (43%), Gaps = 50/241 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ N I DPD+IA+QE ++ + G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSARAKLTRGVLNTIKEKDPDIIAIQETKLRSTG---PTKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADS----KYAGTALLVKKCFQPKKVS 151
E+ L M F +Y W ++ YAGT L K P+ V+
Sbjct: 58 EI-----------LAEM-------FPDYDYVWRSSEEPARKGYAGTMFLYKNTLAPE-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR++ EF+ +Y+ Y PN+G E R+ WD++ E++ +
Sbjct: 99 KPVIAAPEPMDHEGRILTLEFDNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H ID+ HPE + GFT ER+ F +L
Sbjct: 157 DQNKPVIASGDYNVAHTPIDLKHPE---------------SNHHNAGFTDEERQDFDKLL 201
Query: 271 K 271
K
Sbjct: 202 K 202
>gi|223985143|ref|ZP_03635238.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
gi|223962889|gb|EEF67306.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
Length = 252
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+K ++WN N L ++ F +F D D+ ALQE ++ P + P HQ
Sbjct: 1 MKLISWNVNGLRACIQKG---FMDFFNEQDADIFALQETKLQPHQIELELPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W A+ K Y+GTA+ K+ +P V + ++
Sbjct: 53 -------------------------YWHSAERKGYSGTAVFTKQ--KPLSVRYDFDEAEG 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
++ +GRVI EFE FY + Y PN+ KEE R +W+ + + + + KP+++
Sbjct: 86 EHPKEGRVITLEFEQFYFVTAYVPNS--KEELARLDYRMQWEDAMARHLAKLNETKPVVY 143
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+ EEID+ +P K N + PGF+ ER++ +L
Sbjct: 144 TGDLNVAVEEIDLKNP------KTNHF---------NPGFSDQERQKMRDLL 180
>gi|108563814|ref|YP_628130.1| exodeoxyribonuclease III [Helicobacter pylori HPAG1]
gi|107837587|gb|ABF85456.1| exodeoxyribonuclease [Helicobacter pylori HPAG1]
Length = 250
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ F+ Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFRGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|421720757|ref|ZP_16160034.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
gi|407225541|gb|EKE95311.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
Length = 250
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420405856|ref|ZP_14905029.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
gi|393021675|gb|EJB22805.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
Length = 250
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR++ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRMVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|397904085|ref|ZP_10505014.1| Exodeoxyribonuclease III [Caloramator australicus RC3]
gi|343178831|emb|CCC57913.1| Exodeoxyribonuclease III [Caloramator australicus RC3]
Length = 252
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 46/216 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ TWN N L +K F +FI DPD++ LQE ++ D KN
Sbjct: 1 MRIYTWNVNGLRSILKKG---FLDFIKDEDPDILCLQETKLQEEQIDDEIKN-------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y ++S A+ K Y+G A+ K +PK + + + +
Sbjct: 50 ------------------LKGYYKYFSFANKKGYSGVAIFTK--VEPKNIYYGI--GIEE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR-----RKWDKRIQEFVLQCSGKP 215
++ +GR+++AE+E F L N Y PN +E ++ R + K + E GK
Sbjct: 88 FDTEGRILIAEYEDFILFNIYFPNGKMSDERLDYKLRFYDAIMDYSKNLLE-----EGKN 142
Query: 216 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKE 251
LI CGD N +H EID+ +P+ K +G++P +E
Sbjct: 143 LIICGDYNTAHREIDLKNPK--QNEKSSGFLPIERE 176
>gi|188528295|ref|YP_001910982.1| exodeoxyribonuclease III [Helicobacter pylori Shi470]
gi|188144535|gb|ACD48952.1| exodeoxyribonuclease [Helicobacter pylori Shi470]
Length = 250
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 106/243 (43%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLVSWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 40 -----------QDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFELFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420459312|ref|ZP_14958114.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
gi|393072002|gb|EJB72782.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
Length = 250
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|308179822|ref|YP_003923950.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|308045313|gb|ADN97856.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 254
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 106/236 (44%), Gaps = 65/236 (27%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNHQELK 98
+K ++WN N L VK+ F+TTF D D +QE ++ A +++
Sbjct: 1 MKLISWNVNGLRAAVKHG------FVTTFNELDADFFCVQETKLQAG----------QIE 44
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT 157
D F Y +W+ A+ K Y+GTA+ K +P V++ +
Sbjct: 45 LD-------------------FPGYYQYWNYAERKGYSGTAIFTKH--EPLNVTYGI--G 81
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPL 216
+++ +GRVI E+ +Y+L Y PN+G E R++W+ ++ S KPL
Sbjct: 82 VPEFDDEGRVITLEYADYYVLTCYTPNSG--GELKRLDYRQQWEDAFLTYINSLSANKPL 139
Query: 217 IWCGDLNVSHEEIDVS--HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
I+CGDLNV+HE ID+ H +A GFT ER +F +L
Sbjct: 140 IFCGDLNVAHENIDLKNWHSNHHSA-----------------GFTDEERTKFDRLL 178
>gi|389816348|ref|ZP_10207511.1| exodeoxyribonuclease III [Planococcus antarcticus DSM 14505]
gi|388465341|gb|EIM07660.1| exodeoxyribonuclease III [Planococcus antarcticus DSM 14505]
Length = 251
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 42/211 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K F +F T D DV LQE+++
Sbjct: 1 MKLISWNVNGLRAVMKKG---FMDFFTEADADVFCLQEIKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E I M Y +W+ A K Y+GTA+ K+ +P + + L + +
Sbjct: 39 ----QEGQIEM------DLPGYYTYWNYAHKKGYSGTAIFTKE--EPLSIQYGL--GSEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GR+I EF+ Y++ Y PN+ + R W++ I FV KP+I C
Sbjct: 85 HDTEGRMIALEFDGHYVVTVYTPNS--QHGLLRLDYRLLWEEAILSFVKTLDNQKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNK 250
GDLNV+HEEID+ +P+ A K +G+ P +
Sbjct: 143 GDLNVAHEEIDLKNPK--ANKKNSGFTPDER 171
>gi|423598952|ref|ZP_17574952.1| exodeoxyribonuclease [Bacillus cereus VD078]
gi|401237222|gb|EJR43679.1| exodeoxyribonuclease [Bacillus cereus VD078]
Length = 252
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + + K +++C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLNEKKSVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++F L+E +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREQFTRTLEEGFV 184
>gi|347531556|ref|YP_004838319.1| exodeoxyribonuclease [Roseburia hominis A2-183]
gi|345501704|gb|AEN96387.1| exodeoxyribonuclease [Roseburia hominis A2-183]
Length = 255
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 100/231 (43%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L ++ F+ F T D D+ +QE ++ AP+
Sbjct: 1 MKLISWNVNGLRACMQKG---FAEFFTASDADIFCIQESKLQEGQIDFAPEG-------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ +K +P V + + +
Sbjct: 50 ---------------------YYAYWNYAQKKGYSGTAIFTRK--EPLSVHYGIGIP--Q 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF FY++ Y PN+ + E R +W+ ++ KPLI C
Sbjct: 85 HDTEGRVITLEFPDFYMVTCYTPNS--QNELARLSYRMEWEDAFLSYLKGLDRNKPLILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+HEEID+ +P K + GFT ER + A+L
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFTDEERTKMTALL 178
>gi|116628715|ref|YP_813887.1| exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|282852356|ref|ZP_06261698.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|311111551|ref|ZP_07712948.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
gi|116094297|gb|ABJ59449.1| Exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|282556098|gb|EFB61718.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|311066705|gb|EFQ47045.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
Length = 275
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 106/241 (43%), Gaps = 50/241 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ N I DPD+IA+QE ++ + G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSARAKLTRGVLNTIKEKDPDIIAIQETKLRSTG---PTKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADS----KYAGTALLVKKCFQPKKVS 151
E+ L M F +Y W ++ YAGT L K P+ V+
Sbjct: 58 EI-----------LAEM-------FPDYDYVWRSSEEPARKGYAGTMFLYKNTLAPE-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR++ EF+ +Y+ Y PN+G E R+ WD++ E++ +
Sbjct: 99 KPVIGAPEPMDHEGRILTLEFDNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H ID+ HPE + GFT ER+ F +L
Sbjct: 157 DQNKPVIASGDYNVAHTPIDLKHPE---------------SNHHNAGFTDEERQDFDKLL 201
Query: 271 K 271
K
Sbjct: 202 K 202
>gi|109946643|ref|YP_663871.1| exodeoxyribonuclease III [Helicobacter acinonychis str. Sheeba]
gi|109713864|emb|CAJ98872.1| exodeoxyribonuclease [Helicobacter acinonychis str. Sheeba]
Length = 250
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE+FYL+N Y PN+ ++ + R W+ + F+ KP+I C
Sbjct: 85 HDKEGRIITCEFESFYLVNIYTPNS--QQALSRLNYRMSWEVEFRRFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNTGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|420462757|ref|ZP_14961538.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
gi|393078158|gb|EJB78902.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
Length = 250
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NAFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|308183626|ref|YP_003927753.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
gi|384893489|ref|YP_005767582.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308062786|gb|ADO04674.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308065811|gb|ADO07703.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
Length = 250
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 107/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 40 -----------QDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|384895029|ref|YP_005769078.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
gi|308064283|gb|ADO06170.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
Length = 250
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLVSWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFELFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|170582912|ref|XP_001896345.1| exodeoxyribonuclease III family protein [Brugia malayi]
gi|158596475|gb|EDP34813.1| exodeoxyribonuclease III family protein [Brugia malayi]
Length = 314
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 56/234 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN L +K N + + +PD+IALQE + D P Q
Sbjct: 59 IKIISWNVAGLRALIKKNG---HSVLVEENPDIIALQETKCV-----DVPSELQN----- 105
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLE---KT 157
Y + + ++ S + G LL K+ +P KV++S + K
Sbjct: 106 --------------------GYHTFLNASEKSGHGGVLLLTKE--EPIKVTYSFDDKSKC 143
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPL 216
+ GR+I+AE+E++YL+N Y PN+G + +R+ WD F+ + KP+
Sbjct: 144 DIDGNGKGRIIIAEYESYYLINAYVPNSG--RGLVNLDKRKIWDDYYLTFIKKLDLSKPV 201
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
++ GDLNV+H+EID+++P+ NK GFT ER F +L
Sbjct: 202 VYVGDLNVAHQEIDLANPK----------TNRNK----TAGFTDQERNDFTRLL 241
>gi|398309083|ref|ZP_10512557.1| exodeoxyribonuclease III [Bacillus mojavensis RO-H-1]
Length = 252
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 39/195 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D++ LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKDEDADIVCLQETKIQDGQVDLEPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A+ K Y+GTA+ K+ +P V + + +
Sbjct: 51 ---------------------YHVYWNYAEKKGYSGTAVFSKQ--KPLNVMYGI--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE Y++ Y PN K R +W++ + F+L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENMYVMTVYTPNA--KRGLERIDYRLQWEEALLAFILELDKKKPVILC 143
Query: 220 GDLNVSHEEIDVSHP 234
GDLNV+H+EID+ +P
Sbjct: 144 GDLNVAHQEIDLKNP 158
>gi|410460164|ref|ZP_11313847.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
gi|409927394|gb|EKN64530.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
Length = 251
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 105/231 (45%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V+ F ++ D+ +QE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVQKG---FLDYFHEMGADIFCVQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+NY +W+ A K Y+GTA+ K +P VS+ L +
Sbjct: 46 N-----------------LENYNQYWNYAAKKGYSGTAVFTK--IKPISVSYGLGEHMED 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+E GR I EF +FYL+N Y PN+ + + R +W+ I+ ++L+ KP+I C
Sbjct: 87 HE--GRAITLEFPSFYLVNVYTPNS--QRDLARLSYRLEWEDNIRNYLLELDKVKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ + K + G GFT ER++ +L
Sbjct: 143 GDLNVAHQEIDLKNY---------------KTNRGNSGFTDEEREKMTRLL 178
>gi|340347509|ref|ZP_08670617.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|433653537|ref|YP_007297391.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|339609205|gb|EGQ14080.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|433304070|gb|AGB29885.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
Length = 266
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 106/243 (43%), Gaps = 62/243 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSN--------FITTFDPDVIALQEVRMPAAGSKDAPKN 93
+KF++WN N L VK + N + D D LQE ++ AG D
Sbjct: 1 MKFISWNVNGLRACVKPKTDDAGNVTSKGFEAYFKELDADFFCLQETKL-QAGQIDLQ-- 57
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
F YQ +W+ A+ K Y+GTA+ + +P V++
Sbjct: 58 --------------------------FDGYQSYWNYAEKKGYSGTAVFTRH--EPLGVTY 89
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG----WKEEENSFQRRRKWDKRIQEFV 208
+ K +++ +GRVI E+ FYL+ Y PN+ + + R W+ +E++
Sbjct: 90 GIGKE--EHDHEGRVITLEYPDFYLITCYTPNSQDTIKGELKPRRLGYRMTWEDDFREYM 147
Query: 209 LQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
++ KP+I CGDLNV+HEE+D+ +P K + GFT ER++
Sbjct: 148 MRLDKNKPVIMCGDLNVAHEEMDLKNP---------------KTNHNNAGFTDEEREKMT 192
Query: 268 AIL 270
+L
Sbjct: 193 TLL 195
>gi|365843219|ref|ZP_09384168.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
gi|364573045|gb|EHM50567.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
Length = 250
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ VTWN N L + F +F D DV+ LQE ++
Sbjct: 1 MRLVTWNVNGLRACLGKG---FLDFFQRVDADVVCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ +++ AL P Y+++W+ A+ K Y+GTA+ + +P V+ + A
Sbjct: 39 ---QPDQI----ALELP---GYRLFWNSAEKKGYSGTAVFTR--VEPLSVTCGIGLDAHD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
+E GRVI AEF+ F+L+ Y PN + E R +W+ + ++++ K P++ C
Sbjct: 87 HE--GRVITAEFDGFFLVCCYTPNA--QNELARIDYRMQWEDDFRAYLMELDKKKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+HEEID+ +P + + G GF+ ER + +L
Sbjct: 143 GDLNVAHEEIDLKNP---------------RSNRGNAGFSDQERGKMTELL 178
>gi|403745673|ref|ZP_10954450.1| exodeoxyribonuclease III Xth [Alicyclobacillus hesperidum
URH17-3-68]
gi|403121241|gb|EJY55561.1| exodeoxyribonuclease III Xth [Alicyclobacillus hesperidum
URH17-3-68]
Length = 219
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 24/151 (15%)
Query: 122 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 180
+YQ +W+ A+ K Y+GTA+ K P V + +E + EP+GR+I EFE Y++
Sbjct: 18 SYQQYWNYAEKKGYSGTAVFTK--IPPLSVRYGIEDDS---EPEGRIITLEFEACYVVTV 72
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAA 239
Y PN K + + R +W+ R + ++L KP+I CGDLNV+HEEID+ +
Sbjct: 73 YTPNA--KRDLSRLPYRLEWEDRFRAYLLHLDQNKPVIACGDLNVAHEEIDIKNA----- 125
Query: 240 AKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
K + G GFT ER + +L
Sbjct: 126 ----------KSNRGNSGFTDEERSKMTQLL 146
>gi|188585577|ref|YP_001917122.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350264|gb|ACB84534.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 251
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 114/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K + E+ N ++ D+ +QE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACLKKGFLEYFNEVS---GDIFCVQETKL------------QEGQID- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K QP V + + + K
Sbjct: 45 -------------LELPGYFQY---WNYAEKKGYSGTAIFTK--IQPLTVQYGIGEA--K 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI EF +YL+N Y PN+ + E R +W+ + +++ S KP+I C
Sbjct: 85 HDKEGRVITLEFCDYYLVNVYTPNS--QRELARLDYRLQWEDAFKNYLVNLDSEKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P+ NK + GFT ER + +L I F
Sbjct: 143 GDLNVAHKEIDLKNPK------------NNKRN---AGFTEEERNKLTELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|421712646|ref|ZP_16151978.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
gi|407217447|gb|EKE87280.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
Length = 250
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ F Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFNGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNTGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|217031877|ref|ZP_03437380.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298735503|ref|YP_003728024.1| exodeoxyribonuclease III [Helicobacter pylori B8]
gi|216946529|gb|EEC25131.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298354688|emb|CBI65560.1| exodeoxyribonuclease III [Helicobacter pylori B8]
Length = 250
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ F Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFNGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|403669653|ref|ZP_10934844.1| exodeoxyribonuclease [Kurthia sp. JC8E]
Length = 253
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 100/232 (43%), Gaps = 57/232 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KFV+WN N + +K W + D D +QE + A + D P
Sbjct: 1 MKFVSWNVNGIRACLKKGWL---TYFQEVDADFFCIQETKCQAGQVEIDLP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
Y+ +W+ A K Y+GTA+ K P V + +
Sbjct: 49 ---------------------GYEQYWNYALKKGYSGTAIFTKHT--PLSVKYGVGDH-- 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
+ E +GR+I E+E FY++ Y PN+ K + + R W+ ++ ++ Q KP+I+
Sbjct: 84 ETEDEGRIITLEYENFYVVTVYTPNS--KRDLARLEERLVWEDDLRVYLQQLDAQKPVIY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
CGDLNV+HEEID+ + K + G GFT ER + +L
Sbjct: 142 CGDLNVAHEEIDLKNA---------------KSNVGNSGFTDGERSKMTLLL 178
>gi|332522573|ref|ZP_08398825.1| exodeoxyribonuclease III [Streptococcus porcinus str. Jelinkova
176]
gi|332313837|gb|EGJ26822.1| exodeoxyribonuclease III [Streptococcus porcinus str. Jelinkova
176]
Length = 275
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 107/242 (44%), Gaps = 50/242 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + + D D+IA+QE ++ A G
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVIDRLVSEDADIIAIQETKLSATGP-------- 52
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGTALLVKKCFQPKKVS 151
TK E L F NY +W S A YAGT L K+ P V+
Sbjct: 53 -----TKKHLESILNY--------FPNYLHVWRSSVEPARKGYAGTMFLYKQTLNPV-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+ F++ Y PN G + R++WD + E++ Q
Sbjct: 99 FPEIGAPTTMDSEGRIITLEFDDFFVTQVYTPNAG--DGLRRLADRQEWDIKYAEYLAQL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER F A+L
Sbjct: 157 DAQKPVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEERAGFTALL 201
Query: 271 KE 272
++
Sbjct: 202 EK 203
>gi|385226164|ref|YP_005786089.1| exodeoxyribonuclease III [Helicobacter pylori 83]
gi|332674310|gb|AEE71127.1| exodeoxyribonuclease III [Helicobacter pylori 83]
Length = 250
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 107/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 40 -----------QDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR++ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRMVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|421077946|ref|ZP_15538906.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
gi|392523930|gb|EIW47096.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
Length = 250
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F F T D D+ +QE +M H +
Sbjct: 1 MKLISWNVNGLRACLSKG---FEGFFNTADADIFCIQETKM-----------HPD----- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
E LI Y+ +W+ A K Y+GTA+ + P V + L +
Sbjct: 42 --QAEIGLI-----------GYEKYWNSAVKKGYSGTAVFTR--ITPLSVIYGLNIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE F+L+N Y PN+ K E R +W+ + +++ + KP+I C
Sbjct: 85 HDQEGRLITLEFENFFLVNVYTPNS--KRELLRLDYRMRWEDEFRTYLITLNQSKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GD+NV+H+EID+ +P K + GFT ER + A+L+
Sbjct: 143 GDINVAHQEIDIKNP---------------KTNRRNAGFTDEERDKMTALLE 179
>gi|456012224|gb|EMF45930.1| Exodeoxyribonuclease III [Planococcus halocryophilus Or1]
Length = 252
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 106/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN N L +K F +F T + DV LQE+++
Sbjct: 2 LKLISWNVNGLRAVMKKG---FMDFFTEVNADVFCLQEIKL------------------- 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E I M Y +W+ A K Y+GTA+ K+ +P + + L L
Sbjct: 40 ----QEGQIEM------DLPGYYTYWNYAHKKGYSGTAIFTKQ--KPLSIQYGLGLEEL- 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+ +GR+I EF+ +Y++ Y PN+ + R W+ I FV KP++ C
Sbjct: 87 -DTEGRIITLEFDNYYVITVYTPNS--QHGLLRLDYRLLWEDAILSFVKALDNHKPVLLC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+HEEID+ +P+ NK++ GFT+ ER + L++ +
Sbjct: 144 GDLNVAHEEIDLRNPK------------ANKKN---SGFTLEERGKMTQFLEKGFV 184
>gi|423522432|ref|ZP_17498905.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
gi|401175126|gb|EJQ82329.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
Length = 252
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 54/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+H+EID+ +P K + PGF+ ER++F L+
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTLALE 180
>gi|328782712|ref|XP_623551.2| PREDICTED: recombination repair protein 1 [Apis mellifera]
Length = 346
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 53/224 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN + + +K N ++ I D D++ALQE + D+ K +E+K
Sbjct: 94 LKISSWNVSGIRAVIKKNGIKY---IAKEDADIVALQETKC------DSNKLPEEIK--- 141
Query: 102 KASREEKLILMRALSSPPFKNYQIWW-SLADSKYAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++ S Y G AL K+ +P V + L + +
Sbjct: 142 ------------------LNGYHYYFLESKKSGYCGVALFTKE--KPIDVKYGLNNS--E 179
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I AE+ FYL+N Y PN G K + +R KW++ + +V KP+I C
Sbjct: 180 FDNEGRLITAEYLNFYLINVYVPNAGQKLV--TLPKRLKWNEIFKTYVRNLDEKKPVIIC 237
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 263
GD+NV+H+EID+ +P K + GFTI ER
Sbjct: 238 GDMNVAHKEIDLRNP---------------KTNIKNAGFTIEER 266
>gi|444374829|ref|ZP_21174132.1| exodeoxyribonuclease III [Helicobacter pylori A45]
gi|443620688|gb|ELT81131.1| exodeoxyribonuclease III [Helicobacter pylori A45]
Length = 250
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|386751875|ref|YP_006225095.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
gi|384558133|gb|AFH98601.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
Length = 250
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 106/243 (43%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 40 -----------QDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFELFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|154502978|ref|ZP_02040038.1| hypothetical protein RUMGNA_00800 [Ruminococcus gnavus ATCC 29149]
gi|153796517|gb|EDN78937.1| exodeoxyribonuclease III [Ruminococcus gnavus ATCC 29149]
Length = 250
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 108/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ + EF D D+ LQE ++ A EL
Sbjct: 1 MKLISWNVNGIRACVQKGFLEF---FREADADIFCLQETKLQAG--------QIEL---- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y+ +W+ A K Y+GTA+ KK +P V++ + +
Sbjct: 46 -----------------DLEGYEQYWNYAVKKGYSGTAVFTKK--KPLNVTYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE FY + Y PN+ + E R KW+ ++ + KP+I+C
Sbjct: 85 HDQEGRVITLEFEEFYFVTVYTPNS--QNELARLDYRMKWESDFLAYLKKLEEEKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER +F +L I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTEMLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|315606307|ref|ZP_07881323.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
gi|315251998|gb|EFU31971.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
Length = 249
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 40/195 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++F++WN N L V F D D LQE +M
Sbjct: 1 MRFISWNVNGLRACVSKG---FEESFKALDADFFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F+ Y +W+ A+ K Y+GTA+ K +P V++ L +
Sbjct: 39 ---QEGQLNLQ-------FEGYDSYWNYAEKKGYSGTAIYTKH--KPLNVTYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E E FYL+ Y PN+ ++E R W+ +++ K P+I C
Sbjct: 85 HDHEGRVITLEMEDFYLITVYTPNS--QDELRRLNYRMTWEDDFLKYIQGLDAKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHP 234
GDLNV+HEEID+ +P
Sbjct: 143 GDLNVAHEEIDLKNP 157
>gi|288927024|ref|ZP_06420917.1| exodeoxyribonuclease III [Prevotella buccae D17]
gi|288336198|gb|EFC74586.1| exodeoxyribonuclease III [Prevotella buccae D17]
Length = 249
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 40/195 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++F++WN N L V F D D LQE +M
Sbjct: 1 MRFISWNVNGLRACVSKG---FEESFKALDADFFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F+ Y +W+ A+ K Y+GTA+ K +P V++ L +
Sbjct: 39 ---QEGQLNLQ-------FEGYDSYWNYAEKKGYSGTAIYTKH--KPLNVTYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E E FYL+ Y PN+ ++E R W+ +++ K P+I C
Sbjct: 85 HDHEGRVITLEMEDFYLITVYTPNS--QDELRRLDYRMTWEDDFLKYIQGLDAKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHP 234
GDLNV+HEEID+ +P
Sbjct: 143 GDLNVAHEEIDLKNP 157
>gi|420466271|ref|ZP_14965031.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
gi|393078846|gb|EJB79584.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
Length = 250
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|374583527|ref|ZP_09656621.1| exodeoxyribonuclease III [Desulfosporosinus youngiae DSM 17734]
gi|374419609|gb|EHQ92044.1| exodeoxyribonuclease III [Desulfosporosinus youngiae DSM 17734]
Length = 262
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 65/247 (26%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VKN F +F D D+ LQE T
Sbjct: 1 MKLISWNVNGIRACVKNG---FMDFFLKEDADIFCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPF--KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
K +E+ PF Y +W+ A K Y+GTA+ K +P + + + K
Sbjct: 37 KIQKEQ----------IPFTLDGYYQYWNFAQKKGYSGTAIFSK--IEPLNIVYGMGKE- 83
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL---QCSGKP 215
+++ +GR+I EFE FY++ YAPN+ + R KW+ +++ +C KP
Sbjct: 84 -EHDKEGRLITLEFEKFYVVTVYAPNS--QRGLARLDYRMKWEDDFLNYIIGLEKC--KP 138
Query: 216 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
+I CGDLNV+H+E+D+ +P NK++ GFT ER +F ++ + +
Sbjct: 139 VIVCGDLNVAHKEMDLKNP------------STNKKN---AGFTPEERSKFDEVINKGFV 183
Query: 276 --FLCFY 280
F FY
Sbjct: 184 DTFRFFY 190
>gi|395244636|ref|ZP_10421596.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
gi|394483087|emb|CCI82604.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
Length = 275
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 102/240 (42%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSL---LLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL L N E + DPDVIA+QE ++ A G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSNRAQETRQVLAAIKEKDPDVIAIQETKLRATG---PTKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E KL F Y W A YAGT L K + PK V+
Sbjct: 58 E-----------KLAEF-------FPEYSYVWRSSQEPARKGYAGTMFLYKNTYDPK-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ Y+ Y PN+G E R+ WD++ + ++ +
Sbjct: 99 YPKIDAPEPMDDEGRIITLEFDNCYVSQVYTPNSG--NELRRLDDRQIWDEKYRLYLQEL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H ID+ HP+ + GFT ER+ F A+L
Sbjct: 157 DKNKPVIASGDYNVAHTPIDLKHPQ---------------NNHHNAGFTDEERRDFTALL 201
>gi|420145437|ref|ZP_14652903.1| Exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402932|gb|EJN56217.1| Exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 254
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK N F F D D +QE ++ A +
Sbjct: 1 MKFISWNVNGLRAVVKKN---FMEFFEQQDADFFCIQETKLQAGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L+ P + Y W+ A+ K Y+GTA+ K +P V++ + +
Sbjct: 45 -------------LTLPGYYQY---WNYAERKGYSGTAIFTKH--EPLNVTYGM--GVAE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GR+I E++ FYLL Y PN+ K + + R W+ + ++ + K P+I+C
Sbjct: 85 HDQEGRLITLEYKDFYLLTCYTPNSQTKLKRLDY--RMSWEDAFRSYISTLNQKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+HE ID+ + +K + GF+ ER +F +L
Sbjct: 143 GDLNVAHEPIDLKN---------------DKTNHHNAGFSDEERAKFSQLL 178
>gi|320528523|ref|ZP_08029680.1| exodeoxyribonuclease III [Solobacterium moorei F0204]
gi|320131109|gb|EFW23682.1| exodeoxyribonuclease III [Solobacterium moorei F0204]
Length = 251
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 39/195 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L +K F++F D D ALQE +M +DA K
Sbjct: 1 MKFISWNVNGLRAAMKKG---FADFFHEQDADFFALQETKMQPDQLEDAMK--------- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F+ Y ++ + A+ K Y+GT + K +P V++ +E K
Sbjct: 49 ------------------FEGYHMYMNSAERKGYSGTLIYTKH--EPLSVTYEIEGDVTK 88
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
+GRVI E+ FY + Y PN+ K+ R +W++ +++ +++ K P+I+
Sbjct: 89 ---EGRVITLEYPDFYFVCAYVPNS--KDGLLRLPYRIEWEEMLRKHLMELDKKKPVIYT 143
Query: 220 GDLNVSHEEIDVSHP 234
GDLNV+HEEID+ +P
Sbjct: 144 GDLNVAHEEIDLKNP 158
>gi|403071080|ref|ZP_10912412.1| exodeoxyribonuclease [Oceanobacillus sp. Ndiop]
Length = 253
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 102/231 (44%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK + ++ N I D D+ +QE +
Sbjct: 1 MKLVSWNVNGIRACVKKGFLDYFNEI---DADIFCIQESK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L + Y +W+ A K Y+GTA+ KK +P V + L K
Sbjct: 38 ---------LQEGQINLELDGYHQYWNYAIRKGYSGTAVFTKK--KPLHVRYGLGKE--D 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+ +GR+I EF F+L+N Y PN+ K + R +W+ + ++ + KP+I+C
Sbjct: 85 NQEEGRIITLEFNEFFLVNVYTPNS--KRDLTRLDYRLEWEDELYSYLRELDEEKPVIYC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ + +K + G GFT ER + +L
Sbjct: 143 GDLNVAHQEIDLKN---------------HKTNHGNSGFTAQERGKMTRLL 178
>gi|348027153|ref|YP_004766958.1| exodeoxyribonuclease III [Megasphaera elsdenii DSM 20460]
gi|341823207|emb|CCC74131.1| exodeoxyribonuclease III [Megasphaera elsdenii DSM 20460]
Length = 254
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 40/195 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KF++WN N L +K F + D DV LQE ++ A G D
Sbjct: 6 KFISWNVNGLRAVMKKG---FLDIFQALDADVFCLQETKLQA-GQID------------- 48
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P ++ Y W+ AD K Y+GTA+ + P V + + ++
Sbjct: 49 ------------LDLPGYEQY---WNYADRKGYSGTAIFTR--LAPLSVRYGMGID--EH 89
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GR+I EF +Y + Y PN+ + E R KW+ ++++L KP+I CG
Sbjct: 90 DHEGRLITLEFPDYYFVTCYTPNS--QSELARLPYRMKWEDDFRQYLLDLHQEKPVIVCG 147
Query: 221 DLNVSHEEIDVSHPE 235
DLNV+HEEID+ +P+
Sbjct: 148 DLNVAHEEIDLKNPK 162
>gi|110801105|ref|YP_695823.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
gi|110675752|gb|ABG84739.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
Length = 250
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYFQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDLFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + GFT ER +F +L I
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSGFI 183
>gi|254555843|ref|YP_003062260.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
gi|380031793|ref|YP_004888784.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|418274434|ref|ZP_12889932.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448820389|ref|YP_007413551.1| Exodeoxyribonuclease III [Lactobacillus plantarum ZJ316]
gi|254044770|gb|ACT61563.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
gi|342241036|emb|CCC78270.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|376010000|gb|EHS83326.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448273886|gb|AGE38405.1| Exodeoxyribonuclease III [Lactobacillus plantarum ZJ316]
Length = 254
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 61/234 (26%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNHQELK 98
+K ++WN N L VK+ F+TTF D D +QE ++ A +++
Sbjct: 1 MKLISWNVNGLRAAVKHG------FVTTFNELDADFFCVQETKLQAG----------QIE 44
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT 157
D F Y +W+ A+ K Y+GTA+ K +P V++ +
Sbjct: 45 LD-------------------FPGYYQYWNYAERKGYSGTAIFTKH--EPLNVTYGI--G 81
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPL 216
+++ +GRVI E+ +Y+L Y PN+G E R++W+ ++ S KPL
Sbjct: 82 VPEFDDEGRVITLEYADYYVLTCYTPNSG--GELKRLDYRQQWEDAFLTYINSLSANKPL 139
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
I+CGDLNV+HE ID+ + + + GFT ER +F +L
Sbjct: 140 IFCGDLNVAHENIDLKNW---------------RSNHHSAGFTDEERTKFDRLL 178
>gi|384890060|ref|YP_005764362.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
gi|297380626|gb|ADI35513.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
Length = 250
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFELFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|423483329|ref|ZP_17460019.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
gi|401140880|gb|EJQ48435.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
Length = 252
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + G D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQS-GQIDLD---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 48 ------------------LEGYYTYWNYALKKGYSGTAIFTKK--EPISVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+++C
Sbjct: 86 HDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H+EID+ +P K + PGF+ ER++ +L+E I
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKITRVLEEGFI 184
>gi|302388430|ref|YP_003824252.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
gi|302199058|gb|ADL06629.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
Length = 251
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 55/235 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V+ F ++ D DV +QE ++ QE + D
Sbjct: 3 KMISWNVNGLRACVEKG---FLDYFKEMDADVFCIQESKL------------QEGQID-- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L+ P + Y W+ A+ K Y+GTAL K+ +P V++ + A ++
Sbjct: 46 ------------LTLPGYHQY---WNYAEKKGYSGTALFTKE--KPLSVAYGI--NAEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AE+ +Y++ Y PN+ + E R W+ + ++ + KP+I+CG
Sbjct: 87 DREGRVIAAEYPEYYVVTCYTPNS--QNELARLPYRLTWEDAVLAYLKKLEEKKPVIFCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
DLNV+H+EID+ +P K + GFT ER++F +L+ I
Sbjct: 145 DLNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKFTVLLESGFI 184
>gi|410622567|ref|ZP_11333400.1| exodeoxyribonuclease III [Glaciecola pallidula DSM 14239 = ACAM
615]
gi|410157921|dbj|GAC28774.1| exodeoxyribonuclease III [Glaciecola pallidula DSM 14239 = ACAM
615]
Length = 255
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 37/196 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + +K +F + + + DV+ LQE T
Sbjct: 1 MKLVSWNVNGVRAAIKK---DFFQSLASLECDVLCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA ++ ++ AL K Y ++ + A K Y+GT+++ + K + + + +
Sbjct: 37 KAQDDQ---VIEALCD--LKGYHVFTNSAIKKGYSGTSIITR----VKPIDVTRDIGIEE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRV+ AEF+ FYL+ Y PN+G + S+ R +WD +V Q KP++ C
Sbjct: 88 HDQEGRVLCAEFDAFYLVTVYTPNSGDSLKRLSY--RTQWDADFLSYVKQLEALKPVVVC 145
Query: 220 GDLNVSHEEIDVSHPE 235
GDLNV+H +ID++ P+
Sbjct: 146 GDLNVAHRDIDIARPK 161
>gi|294674336|ref|YP_003574952.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
gi|294473057|gb|ADE82446.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
Length = 249
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R FS+ D D LQE +M A G D
Sbjct: 1 MKLISWNVNGL--RACEG-KGFSDTFRELDADFFCLQETKMQA-GQLDLA---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F+ Y+ +W+ A+ K Y+GTA+ K P V++ + +
Sbjct: 47 ------------------FEGYESYWNYAEKKGYSGTAIFTKH--HPLSVTYGIGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E E FYL+ Y PN+ ++ R W+ + ++ K P+I C
Sbjct: 85 HDHEGRVITLEMEDFYLVTCYTPNS--QDGLKRLDYRMTWENDFRAYLKGLDAKKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ +P+ ++N GFT ER++F +L
Sbjct: 143 GDLNVAHQEIDLKNPK---TNRMN------------AGFTDQEREQFSTLL 178
>gi|255280445|ref|ZP_05345000.1| exodeoxyribonuclease III [Bryantella formatexigens DSM 14469]
gi|255268910|gb|EET62115.1| exodeoxyribonuclease III [Marvinbryantia formatexigens DSM 14469]
Length = 253
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 55/235 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V+ F + D D+ +QE ++
Sbjct: 4 KMISWNVNGLRACVQKG---FLEYFKEADADIFCIQESKL-------------------- 40
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E ++ L P + Y +W+ A K Y+GTA+ K+ +P VS+ + ++
Sbjct: 41 --QEGQIEL-------PLEGYHQYWNYAKKKGYSGTAVFSKE--EPLSVSYGI--GIEEH 87
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI EF+T+YL+ Y PN+ + E R W++ ++ KP+I+CG
Sbjct: 88 DQEGRVITLEFDTYYLVTVYTPNS--QNELARLPYRMTWEEAFLAYLKGLEKNKPVIFCG 145
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
DLNV+H+EID+ +P K + GFT ER++F IL+ I
Sbjct: 146 DLNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKFSQILENGFI 185
>gi|189235831|ref|XP_966759.2| PREDICTED: similar to ap endonuclease, partial [Tribolium
castaneum]
Length = 344
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 23/153 (15%)
Query: 120 FKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 178
+ Y+ W +D YAG ++VK +P V + ++ + +++ +GR I E+ETF+++
Sbjct: 186 IEGYETLWCSSDKDGYAGVGIMVKD--KPLNVIYGID--SKEHDTEGRCITVEYETFFVV 241
Query: 179 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 237
N Y PN G K + +R W+++ ++F+ S KP+I CGD+NV+H+EID+++P
Sbjct: 242 NVYVPNAGRKLV--TLPKRLDWNEQFEKFIKNLDSQKPVIICGDMNVAHKEIDLANP--- 296
Query: 238 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
K + GFT+ ER A L
Sbjct: 297 ------------KTNTKNAGFTVEERDGMTAFL 317
>gi|328702292|ref|XP_001952290.2| PREDICTED: recombination repair protein 1-like [Acyrthosiphon
pisum]
Length = 317
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 112/236 (47%), Gaps = 52/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN L +K + E+ + DPD+I LQE++ +++ D+
Sbjct: 64 LKIISWNVAGLRAWLKKDVVEY---LKKEDPDIICLQEIKCT----------EKQMPDEA 110
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y+I+ + D + Y+G AL K +P V E L
Sbjct: 111 K-----------------LPGYKIYINSGDKAGYSGVALYSKT--KPISVRMGKEIKDLD 151
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
+ +GRVI AE+E F+L++TY PN G + + +R KWD+ ++++ + + KP++
Sbjct: 152 -DNEGRVIEAEYEQFFLVSTYIPNAGAGLK--TLPKRMKWDEAFRKYLKELDTKKPVVLT 208
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+HEEID+++P K + GFT ER +L++ +
Sbjct: 209 GDLNVAHEEIDIANP---------------KTNTKSAGFTKEERDNMSLLLEQGFV 249
>gi|320529778|ref|ZP_08030856.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
gi|320138017|gb|EFW29921.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
Length = 250
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 103/233 (44%), Gaps = 59/233 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + K +S + ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR----VKPLSVARGIGIPQH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLI 217
+ +GRVI EF+ YL+ Y PN+ +N+ R R W+ + F+L+ S KP++
Sbjct: 86 DNEGRVITMEFDDLYLVTVYTPNS-----QNALARLDYRMAWEDAFRSFLLELRSKKPVV 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
CGDLNV+H EID+ +P K + GFT ER +FG +L
Sbjct: 141 VCGDLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELL 178
>gi|296330017|ref|ZP_06872501.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305676741|ref|YP_003868413.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296153056|gb|EFG93921.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414985|gb|ADM40104.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 252
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 54/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPDG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P +V + + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLRVMYGI--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN+ K R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENLFVMTVYTPNS--KRGLERIDYRMQWEEALLSYILELDKKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+H+EID+ +P K + GF+ ER F +L+
Sbjct: 144 GDLNVAHQEIDLKNP---------------KANRNNAGFSDQERGAFTRLLE 180
>gi|313895351|ref|ZP_07828908.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312976246|gb|EFR41704.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 250
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 103/233 (44%), Gaps = 59/233 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + K +S + ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR----VKPLSVARGIGIPQH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLI 217
+ +GRVI EF+ YL+ Y PN+ +N+ R R W+ + F+L+ S KP++
Sbjct: 86 DNEGRVITMEFDDLYLVTVYTPNS-----QNALARLDYRMAWEDAFRAFLLELRSKKPVV 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
CGDLNV+H EID+ +P K + GFT ER +FG +L
Sbjct: 141 VCGDLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELL 178
>gi|317374848|sp|A0MTA1.1|APEX1_DANRE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; Short=zAP1
gi|117549778|gb|ABK35081.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
gi|117549788|gb|ABK35082.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
gi|117549790|gb|ABK35083.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
gi|117549792|gb|ABK35084.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
Length = 310
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 114/243 (46%), Gaps = 42/243 (17%)
Query: 30 ETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKD 89
E + ++ + +K +WN + L VK N +++ DPD++ LQE
Sbjct: 43 EKLTSKDGRAANMKITSWNVDGLRAWVKKNG---LDWVRKEDPDILCLQE---------- 89
Query: 90 APKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQP 147
TK + + + + P K +W+ ++ K Y+G A+L K +P
Sbjct: 90 -----------TKCAEKALPADITGMPEYPHK----YWAGSEDKEGYSGVAMLCKT--EP 132
Query: 148 KKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF 207
V++ + K +++ +GRVI AEF F+L+ Y PN R+ WD + +
Sbjct: 133 LNVTYGIGKE--EHDKEGRVITAEFPDFFLVTAYVPNA--SRGLVRLDYRKTWDVDFRAY 188
Query: 208 VLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTIAER 263
+ KPL+ CGDLNV+H+EID+ +P+ K G+ P +E + Q GFT + R
Sbjct: 189 LCGLDARKPLVLCGDLNVAHQEIDLKNPK--GNRKNAGFTPEEREGFTQLLEAGFTDSFR 246
Query: 264 KRF 266
+ +
Sbjct: 247 ELY 249
>gi|307566413|ref|ZP_07628850.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
gi|307344885|gb|EFN90285.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
Length = 249
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 106/231 (45%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V N+ E F+ D D LQE +M QE + D
Sbjct: 1 MKFISWNVNGLRACVGKNFKE--EFL-ALDADFFCLQETKM------------QEGQLD- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
LS P +++Y W+ AD K Y+GTA+ K P VS + +
Sbjct: 45 -------------LSFPGYESY---WNYADKKGYSGTAIFTKHT--PLSVSRGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E FYL+ Y PN+ +++ R +W+ Q ++ KP+I C
Sbjct: 85 HDHEGRVITLEMADFYLVTVYTPNS--QDQLKRLPYRMQWETDFQSYLHSLDKHKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GD+NV+HEEID+ +P K + GF+ ER++ +L
Sbjct: 143 GDMNVAHEEIDLKNP---------------KSNHFNAGFSDEEREKMTTLL 178
>gi|332637180|ref|ZP_08416043.1| exodeoxyribonuclease III [Weissella cibaria KACC 11862]
Length = 276
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 107/237 (45%), Gaps = 47/237 (19%)
Query: 42 LKFVTWNANSLLLRVKN-------NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
+KF++WN +S+ V++ W + I PDV+A+QE ++ A G
Sbjct: 1 MKFISWNIDSVNAAVEHKSARGEMTWQVLQD-IAAEQPDVLAIQETKLKATGLTKK---- 55
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL 154
+A+ ++L P + Y + S S Y+GT +L K +P V +
Sbjct: 56 -------QATALDELF-------PGYHRY-LRMSTGRSGYSGTMMLSK--VEPIAVEMPV 98
Query: 155 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK 214
+ + +GR+I EFE Y+ Y PN+G + R+ WD + ++ K
Sbjct: 99 IGAPDEMDIEGRIITLEFENTYVSTVYTPNSG--SNLDRLTDRQAWDDAYRAYIADLDAK 156
Query: 215 -PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
P+I+ GD NV+H+EID+ +P K + GFT ER++FG +L
Sbjct: 157 KPVIFSGDFNVAHQEIDLKNP---------------KTNHKSAGFTDEEREKFGLLL 198
>gi|145355749|ref|XP_001422113.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582353|gb|ABP00430.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 273
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 28/215 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
L V+WN N L +K D DV+ LQE ++ A G + K
Sbjct: 1 LSVVSWNVNGLRSLLKKAPRALDELARRTDADVLVLQETKLGADGRGAVDGEGEAPK--- 57
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKC--FQPKKVSFSLEKTAL 159
+R + + S A Y+GTA+ ++ + K+V + +A
Sbjct: 58 ---------FLREYGTREYAT-----STARKGYSGTAMFIRDGDWAKMKRVE-ATRLSAG 102
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLI 217
++ +GRV+ AE ++ +++N Y PN+G + + +R W++ I+E V L+ GK +I
Sbjct: 103 GFDDEGRVLTAELDSCFVVNAYVPNSG-ADLKRLPERVEVWERAIREHVRALESRGKAVI 161
Query: 218 WCGDLNVSHEEIDV--SHPEFFAAAKLNGYVPPNK 250
+CGDLNV+HEEID+ H E +K G+ P +
Sbjct: 162 YCGDLNVAHEEIDLWGRHAE---NSKSAGFTPEER 193
>gi|315221911|ref|ZP_07863822.1| exodeoxyribonuclease III [Streptococcus anginosus F0211]
gi|315188877|gb|EFU22581.1| exodeoxyribonuclease III [Streptococcus anginosus F0211]
Length = 275
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVRLDADIIAIQETKLSANG---PTKKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D+ F +Y+ W A YAGT L K+ PK ++
Sbjct: 58 KVLDEL------------------FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+ F++ Y PN G + + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDSEGRIITLEFDNFFVTQVYTPNAG--DGLKRLEDRQIWDKKYADYLTAL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DIEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
>gi|384177745|ref|YP_005559130.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349596969|gb|AEP93156.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 252
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 54/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P V + + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLHVIYGI--GVEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE Y++ Y PN+ E + R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENVYVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELEKKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+H+EID+ +P K + GF+ ER+ F L+
Sbjct: 144 GDLNVAHQEIDLKNP---------------KANRNNAGFSDQEREAFTRFLE 180
>gi|330836714|ref|YP_004411355.1| exodeoxyribonuclease III [Sphaerochaeta coccoides DSM 17374]
gi|329748617|gb|AEC01973.1| exodeoxyribonuclease III Xth [Sphaerochaeta coccoides DSM 17374]
Length = 252
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 103/230 (44%), Gaps = 55/230 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KFV+WN N + + F ++ + D D+ LQE ++ QE + D +
Sbjct: 3 KFVSWNVNGIRSCLGKG---FLDYFFSTDADIFCLQETKL------------QEGQHDIE 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+Y +W+ A K Y+GTAL K+ +P +V+F +
Sbjct: 48 -----------------LPDYHQYWNYAQKKGYSGTALFSKE--KPVRVTFGI--APFIE 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI AE+ ++L+ Y PN+ + E R KWD + ++L KP+ CG
Sbjct: 87 DAEGRVITAEYPAYFLVCVYTPNS--QRELLRLDYRMKWDDAFRAYILSLEAMKPVFVCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+H+EID+ +P K + GFT ER +F L
Sbjct: 145 DLNVAHKEIDLKNP---------------KSNVRNAGFTQEERDKFSLFL 179
>gi|443631581|ref|ZP_21115762.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443349386|gb|ELS63442.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 252
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 39/195 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P++V + + +
Sbjct: 51 ---------------------YHMYWNYAVKKGYSGTAVFSKQ--EPQRVMYGI--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN K R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENMFVMTVYTPNA--KRGLERIDYRMQWEEDLLSYILELDQKKPVILC 143
Query: 220 GDLNVSHEEIDVSHP 234
GDLNV+H+EID+ +P
Sbjct: 144 GDLNVAHQEIDLKNP 158
>gi|404371536|ref|ZP_10976840.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
gi|226912337|gb|EEH97538.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
Length = 251
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V + E+ D D+ +QE ++ QE + D
Sbjct: 1 MKLISWNVNGIRSCVTKGFLEY---FKEMDADIFCIQESKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ + Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 E-----------------LEGYHQYWNYAEKKGYSGTAIFTKE--KPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K E R W+ ++++ + KP+I C
Sbjct: 85 HDKEGRVITLEFENFYMVTVYTPNS--KNELARLDYRMVWEDAFRDYLKVLDEKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER +F +L + F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNLRNAGFTEEERSKFTELLNAGFVDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|402303594|ref|ZP_10822685.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
gi|400378209|gb|EJP31070.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
Length = 250
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 103/233 (44%), Gaps = 59/233 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + K +S + ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR----VKPLSVARGIGIPQH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLI 217
+ +GRVI EF+ YL+ Y PN+ +N+ R R W+ + F+L+ S KP++
Sbjct: 86 DNEGRVITMEFDDLYLVTVYTPNS-----QNALARLDYRMAWEDAFRAFLLELRSKKPVV 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
CGDLNV+H EID+ +P K + GFT ER +FG +L
Sbjct: 141 VCGDLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELL 178
>gi|374672838|dbj|BAL50729.1| exodeoxyribonuclease III [Lactococcus lactis subsp. lactis IO-1]
Length = 334
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 107/253 (42%), Gaps = 55/253 (21%)
Query: 43 KFVTWNANSL--------------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK 88
KF++WN +SL L VKN + PDV+A+QE ++P+ G K
Sbjct: 53 KFISWNIDSLNAALTGTSERAALSLAVVKN--------LAQAQPDVLAIQETKLPSTGPK 104
Query: 89 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKC 144
A H E+ ++ FK Y+I W A Y+GT +L K+
Sbjct: 105 KA---HLEVLENL------------------FKGYKIVWRSSVEPARKGYSGTMILYKET 143
Query: 145 FQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 204
++F + +GR+I EF F++ Y PN +E R WD
Sbjct: 144 LPEPVITFPEIDAPEPMDAEGRIITLEFPDFFVTTVYTPNA--QEGLTRLDLRGIWDDNY 201
Query: 205 QEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTI 260
++++ KP+ CGD N ++ EID+++P G+ +E +GQ GFT
Sbjct: 202 RDYLTSLDAQKPVFACGDFNAAYTEIDLANPR--GNHNSAGFTDQEREKFGQLLESGFTD 259
Query: 261 AERKRFGAILKEY 273
R+ G + K Y
Sbjct: 260 TFRQLHGQVEKFY 272
>gi|319954545|ref|YP_004165812.1| exodeoxyribonuclease iii xth [Cellulophaga algicola DSM 14237]
gi|319423205|gb|ADV50314.1| exodeoxyribonuclease III Xth [Cellulophaga algicola DSM 14237]
Length = 254
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 95/192 (49%), Gaps = 37/192 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+ V+WN N + VK +F + T PD++ LQE T
Sbjct: 1 MHIVSWNVNGIRAAVK---KDFFEAVKTMAPDILCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA E + +AL S N+ + + AD K Y+GTA+L K+ + +E
Sbjct: 37 KAQDSE---VAKALES--LSNFSLNSNSADKKGYSGTAILSKQAPISATPNMGIEV---- 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR++ E+++FYL+N Y PN+G K + + R++WDK ++ KP+I C
Sbjct: 88 HDTEGRILCTEYDSFYLVNVYVPNSGQKLDR--LEYRQQWDKDFLAYLKNLEKKKPVIAC 145
Query: 220 GDLNVSHEEIDV 231
GD NV+H+ ID+
Sbjct: 146 GDFNVAHQAIDL 157
>gi|348679732|gb|EGZ19548.1| hypothetical protein PHYSODRAFT_408364 [Phytophthora sojae]
Length = 280
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 106/247 (42%), Gaps = 55/247 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWP-EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
+K V WN N L +K + ++ DPD+ L E
Sbjct: 1 IKIVAWNVNGLRAILKRDESVHLRAYVAQEDPDIFCLSE--------------------- 39
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKV---------- 150
TK R+E L + P +Q W YA TA+ K +P V
Sbjct: 40 TKICRDE---LQKIEDFLPQYEHQYWSCAVKKGYASTAIFSKT--KPLSVKDEIIVGDHD 94
Query: 151 SFSLEKTA-LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDK-RIQEFV 208
S + K+A + +GR + E+ F+L++TY PN G K E F R +WDK ++E
Sbjct: 95 SKGVSKSANSGKDQEGRFLALEYPKFWLVHTYVPNAGGKLERLDF-RTNQWDKAMLREMK 153
Query: 209 LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
KP++WCGDLNV+H+EID+ +P+ NK GFT ER+ FG
Sbjct: 154 EMEKTKPVVWCGDLNVAHQEIDIHNPK------------GNKR---SAGFTDEERESFGN 198
Query: 269 ILKEYLI 275
IL+ +
Sbjct: 199 ILENGFV 205
>gi|384136257|ref|YP_005518971.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290342|gb|AEJ44452.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 260
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 100/231 (43%), Gaps = 54/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L R N F + + D DV +QE ++ A
Sbjct: 1 MKFVSWNVNGL--RACVNKGAFLPYFESVDADVFCVQETKLQAG---------------- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ P + YQ +W+ A+ K Y+GTA+ + P V +
Sbjct: 43 ------------QIQLPIGEAYQQFWNYAERKGYSGTAVFTR--MPPLDVRYGFGNGV-- 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+P+GR+I EF +FY++ Y PN K + + R +W+ + ++ KP+I C
Sbjct: 87 -DPEGRIITLEFPSFYVVTVYTPNA--KRDLSRLPYRLEWEDAFRAYLCALDREKPVIAC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ + K + G GFT ER + +L
Sbjct: 144 GDLNVAHQEIDIKNA---------------KSNRGNSGFTDEERAKMTELL 179
>gi|310659330|ref|YP_003937051.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
gi|308826108|emb|CBH22146.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
Length = 250
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VK + E+ + + + D+ +QE ++
Sbjct: 1 MKLISWNVNGIRACVKKGFLEYFDEV---EADIFCIQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ LM +Y+ +W+ A+ K Y+GTA+ K +P V++ ++
Sbjct: 39 ---QEGQIDLM-------LNDYEQYWNYAEKKGYSGTAVFTK--IKPISVAYGIDIE--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E++ FYL+N Y PN + + + R +W+ + ++ KP+I C
Sbjct: 85 HDTEGRVITLEYDNFYLVNVYTPNA--QPKLARLEYRMQWEDDFRRYLNDLDEKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + PGF+ ER +F +L I F
Sbjct: 143 GDLNVAHNEIDLKNP---------------KSNRKNPGFSDEERGKFTNLLDSGFIDSFR 187
Query: 278 CFY 280
FY
Sbjct: 188 FFY 190
>gi|390345498|ref|XP_789515.3| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Strongylocentrotus purpuratus]
Length = 342
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 117/257 (45%), Gaps = 52/257 (20%)
Query: 16 KPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVI 75
KP ++ K+ T E+ + LK WN + +K +++T PD+
Sbjct: 63 KPEVAEEPKEEVYTTDRKSESGEACNLKISAWNVGGMKAWIKKGG---IDYLTKESPDIF 119
Query: 76 ALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-Y 134
QE ++ D TK E L +Y I ++ A+ K Y
Sbjct: 120 FAQETKI----------------DATKPPPEADL-----------DDYHITYNAAEKKGY 152
Query: 135 AGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSF 194
+G AL KK +P V+ + +++ +GR+I AE+++FY + Y PN+ K +
Sbjct: 153 SGVALFSKK--EPLSVTKGM--GIEEHDKEGRLITAEYDSFYFVGVYVPNSSRKLVRLDY 208
Query: 195 QRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW 253
R++WDK ++ + K P+I CGD+NV+HEEID+ +P+ N+
Sbjct: 209 --RQEWDKDFHAYLKKLDAKKPVICCGDMNVAHEEIDLKNPK------------SNRNK- 253
Query: 254 GQPGFTIAERKRFGAIL 270
PGFT ER+ F ++L
Sbjct: 254 -TPGFTDQEREGFTSLL 269
>gi|449017254|dbj|BAM80656.1| probable DNA-(apurinic or apyrimidinic site) lyase [Cyanidioschyzon
merolae strain 10D]
Length = 418
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 115/249 (46%), Gaps = 46/249 (18%)
Query: 39 KDP--LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQE 96
+DP K ++N SL + + F FI PD++ +QE+++ +
Sbjct: 124 QDPKVAKLASYNIASLRSALSRSKHLFDAFIVHECPDLLTVQEIKV-----------SEP 172
Query: 97 LKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKK--CF-QPKKVSFS 153
+ + K++ +E ++ + Y+GTAL ++K C +P +V +
Sbjct: 173 IPEAIKSALQEH-----------YETCLFHPCRSKRGYSGTALFLRKGSCLGEPVRVQYG 221
Query: 154 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ---EFVLQ 210
+ + +GRVI+ EF + + + Y PN+G + + R R WD+ ++ + + Q
Sbjct: 222 FDPELGVEDSEGRVIIVEFSSCVVCSMYVPNSGEGLKRLDY-RIRVWDEAVRAQLKRLGQ 280
Query: 211 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
+GKP+IWCGDLN +H+EID+ +PE N+ GFT ER F L
Sbjct: 281 GTGKPIIWCGDLNCAHQEIDIWNPE------------GNRRS---AGFTDEERASFSQTL 325
Query: 271 KEYLIFLCF 279
+E + F
Sbjct: 326 QECALLDTF 334
>gi|291276452|ref|YP_003516224.1| exodeoxyribonuclease [Helicobacter mustelae 12198]
gi|290963646|emb|CBG39478.1| putative exodeoxyribonuclease [Helicobacter mustelae 12198]
Length = 250
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 106/243 (43%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L + F +F D D+ +QE +M H + D
Sbjct: 1 MRLISWNVNGLRACMNKG---FMDFFRQIDADIFCIQESKM-----------HPDQADFV 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y +W+ A+ K Y+G +L K+ +P V + +
Sbjct: 47 ------------------FDGYHGYWNSAEKKGYSGVVVLSKQ--EPLCVEYDM--GIEH 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI AE+ FYL+N Y PN+ K E + R +W+ F+ KPLI C
Sbjct: 85 HDKEGRVICAEYPDFYLINVYTPNS--KRELERLEYRMQWEDDFLNFLKNLERKKPLIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER++ +L+ I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEEREKMTTLLENGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|328947089|ref|YP_004364426.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
gi|328447413|gb|AEB13129.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
Length = 251
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 93/195 (47%), Gaps = 40/195 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + N F + D D LQE ++ A + EL D
Sbjct: 1 MKFISWNVNGLRAVMGKN---FMEAFGSLDADFFCLQETKLQAG------QIQMELPD-- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A+ K Y+GTA+ K +P S+ + +
Sbjct: 50 ---------------------YHQFWNYAEKKGYSGTAVFTKH--EPISASYGI--GIAE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E+E F+L+ Y PN+ ++E + R KW+ + ++ + K +I C
Sbjct: 85 HDTEGRVITLEYEKFFLVTVYTPNS--QDELRRLEYRMKWEDDFRAYLKTLALKKGVIVC 142
Query: 220 GDLNVSHEEIDVSHP 234
GD+NV+HEEID+ +P
Sbjct: 143 GDMNVAHEEIDIKNP 157
>gi|197303592|ref|ZP_03168630.1| hypothetical protein RUMLAC_02320 [Ruminococcus lactaris ATCC
29176]
gi|197297326|gb|EDY31888.1| exodeoxyribonuclease III [Ruminococcus lactaris ATCC 29176]
Length = 250
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 108/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F +F D D+ +QE +M
Sbjct: 1 MKLISWNVNGIRACVQKG---FLDFFHEADADIFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L + Y +W+ A K Y+GTA+ KK +P VS+ L +
Sbjct: 39 ---QEGQLNL-------ELERYHQYWNYAVKKGYSGTAVFTKK--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY + Y PN+ + E R KW+ + ++ + KP+I
Sbjct: 85 HDQEGRVITCEFEDFYFVTVYTPNS--QSELARLDYRMKWEDDFRAYLKKLEKKKPVIVT 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER +F +L I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTELLDAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|16081140|ref|NP_391968.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312070|ref|ZP_03593917.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. 168]
gi|221316395|ref|ZP_03598200.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221321308|ref|ZP_03602602.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325591|ref|ZP_03606885.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402778258|ref|YP_006632202.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|452912770|ref|ZP_21961398.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
gi|585113|sp|P37454.1|EXOA_BACSU RecName: Full=Exodeoxyribonuclease
gi|467372|dbj|BAA05218.1| 3'-exo-deoxyribonuclease [Bacillus subtilis]
gi|2636635|emb|CAB16125.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|402483437|gb|AFQ59946.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|407962942|dbj|BAM56182.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7613]
gi|407966954|dbj|BAM60193.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7003]
gi|452117798|gb|EME08192.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
Length = 252
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 107/232 (46%), Gaps = 54/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P++
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPED-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P +V + + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGI--GVEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENVFVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+H+EID+ +P K + GF+ ER+ F L+
Sbjct: 144 GDLNVAHQEIDLKNP---------------KANRNNAGFSDQEREAFTRFLE 180
>gi|336433570|ref|ZP_08613387.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_58FAA]
gi|336016006|gb|EGN45803.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_58FAA]
Length = 250
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 108/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ + EF D D+ LQE ++ A EL
Sbjct: 1 MKLISWNVNGIRACVQKGFLEF---FREADADIFCLQETKLQAG--------QIEL---- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y+ +W+ A K Y+GTA+ KK +P +++ + +
Sbjct: 46 -----------------DLEGYEQYWNYAVKKGYSGTAVFTKK--KPLNMTYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY + Y PN+ + E R KW+ ++ + KP+I+C
Sbjct: 85 HDQEGRVITLEFEEFYFVTVYTPNS--QNELARLDYRMKWESDFLAYLKKLEEKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER +F +L I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTEMLDAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|210617713|ref|ZP_03291707.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
gi|210149155|gb|EEA80164.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
Length = 250
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 110/246 (44%), Gaps = 63/246 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F F D D+ +QE +M A G D
Sbjct: 1 MKLISWNVNGIRACVQKG---FLEFFQEADADIFCIQESKMQA-GQLDLE---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ KK +P V + + +
Sbjct: 47 ------------------LEGYHQYWNYAEKKGYSGTAVFTKK--EPLSVQYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG----KPL 216
++ +GRVI EFE FY + Y PN+ + E R +W+ +F+ G KP+
Sbjct: 85 HDKEGRVITLEFEEFYFVTVYTPNS--QSELARLSYRIQWET---DFLAYLKGLEQKKPV 139
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI- 275
I+ GDLNV++ EID+ +P+ N+++ GFT ER +FG +LK I
Sbjct: 140 IFAGDLNVAYAEIDLKNPK------------TNRKN---AGFTDEERAKFGEVLKAGFID 184
Query: 276 -FLCFY 280
F FY
Sbjct: 185 TFRYFY 190
>gi|405982630|ref|ZP_11040941.1| exodeoxyribonuclease III (xth) [Slackia piriformis YIT 12062]
gi|404389339|gb|EJZ84415.1| exodeoxyribonuclease III (xth) [Slackia piriformis YIT 12062]
Length = 285
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 111/270 (41%), Gaps = 89/270 (32%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L VK F + D D+IALQE ++ QE + D
Sbjct: 1 MRFVSWNVNGLRAAVKKG---FEESVAALDADIIALQETKL------------QEGQID- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
LS P + + WS A+ K Y+GTA+ ++ +P + L +AL
Sbjct: 45 -------------LSLPGYFQF---WSYAERKGYSGTAVFCRQ--KPLRALHGLGDSALD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF------------- 207
E GR++ EF+ ++ ++ Y PN + E R WD ++F
Sbjct: 87 DE--GRIVALEFDDYWFVDVYTPNA--QNELARIDHRMAWDDAFRDFCKNLEKGAIPAGV 142
Query: 208 -VLQC---------------------SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 245
V C S KP++ CGD NV+H+EID+ +P
Sbjct: 143 AVQDCAEGEGHVSISELPLTQEGERTSAKPVVMCGDFNVAHQEIDLKNP----------- 191
Query: 246 VPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
PN+ G GF+ ER++F +L +
Sbjct: 192 -GPNR---GNAGFSDEEREKFTRLLDAGFV 217
>gi|410456343|ref|ZP_11310205.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
gi|409928167|gb|EKN65287.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
Length = 250
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 101/231 (43%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L VK F ++ D D+ +QE +
Sbjct: 1 MKLVSWNVNGLRACVKKG---FLDYFQEVDADIFCVQETK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L S Y +W+ A K Y+GTA+ K +P V + + +
Sbjct: 38 ---------LQEGQISLDLDGYHQYWNYAIKKGYSGTAVFTK--IEPISVRYGVGTD--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
E +GR++ EF+ F+L+N Y PN+ + + R +W+ RI E + + KP+I C
Sbjct: 85 SEEEGRILTLEFDDFFLVNIYTPNS--QRDLARIGYRLEWESRILEHLKELDKLKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ + +K + G GFT ER + ++L
Sbjct: 143 GDLNVAHQEIDLRN---------------SKSNVGNSGFTDEERGKMTSLL 178
>gi|156543084|ref|XP_001605156.1| PREDICTED: recombination repair protein 1-like isoform 1 [Nasonia
vitripennis]
gi|345493726|ref|XP_003427141.1| PREDICTED: recombination repair protein 1-like isoform 2 [Nasonia
vitripennis]
Length = 391
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 109/225 (48%), Gaps = 48/225 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K TWN + + +K N ++ D D+IALQE + +++ D+
Sbjct: 140 IKICTWNVSGIRAVLKKNG---MTYLEREDADIIALQETKCET----------KKIPDEV 186
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK---YAGTALLVKKCFQPKKVSFSLEKTA 158
K K Y ++ DSK Y G AL KK +P +S L++
Sbjct: 187 K-----------------LKGYTRYF--LDSKKAGYCGMALYSKK--EPIDISMGLDE-- 223
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+++ +GR+I AE+E FYL+N Y PN G K + +R KW++ ++ + KP+I
Sbjct: 224 -EFDDEGRLITAEYEHFYLVNVYVPNAGNKLV--TLPKRLKWNEAFKKHIQDLDKKKPVI 280
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKE---DWGQPGFT 259
CGD+NV+H+EID+ +P+ K G+ ++ D+ Q GF
Sbjct: 281 ICGDMNVAHQEIDLKNPK--TNTKNAGFTKEERDGMTDFLQAGFV 323
>gi|209558893|ref|YP_002285365.1| 3-exo-deoxyribonuclease [Streptococcus pyogenes NZ131]
gi|209540094|gb|ACI60670.1| Putative 3-exo-deoxyribonuclease [Streptococcus pyogenes NZ131]
Length = 303
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 110/254 (43%), Gaps = 50/254 (19%)
Query: 28 TTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVR 81
T T+ K++ +K ++WN +SL + P + + D D+IA+QE +
Sbjct: 15 VTITTRLSVRKRNQMKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETK 74
Query: 82 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGT 137
+ A G K H E AL S F NY +W S A YAGT
Sbjct: 75 LSAKGPS---KKHIE-----------------ALLSY-FPNYLHVWRSSVEPARKGYAGT 113
Query: 138 ALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 197
L K P ++F + +GR+I EFE F++ Y PN G + R
Sbjct: 114 MFLYKNTLNPV-ITFPEIGAPTTMDAEGRIITLEFEDFFVTQVYTPNAG--DGLRRLDDR 170
Query: 198 RKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 256
+ WD + +++ + KP++ GD NV+H+EID+++P N+ P
Sbjct: 171 QIWDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SP 215
Query: 257 GFTIAERKRFGAIL 270
GFT ER+ F +L
Sbjct: 216 GFTDEERQGFTNLL 229
>gi|222152632|ref|YP_002561807.1| exodeoxyribonuclease [Streptococcus uberis 0140J]
gi|222113443|emb|CAR41130.1| exodeoxyribonuclease [Streptococcus uberis 0140J]
Length = 275
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 104/239 (43%), Gaps = 48/239 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + T DPD++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVTEDPDILAIQETKLSATGPT---KKHM 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSF 152
E+ LS P + +W S A YAGT L + P V+F
Sbjct: 58 EI----------------LLSYFP-NHLHVWRSSVEPARKGYAGTLFLYRNTLNPV-VTF 99
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
+ +GR+I EF+ FY+ Y PN G ++ R++WD + E++
Sbjct: 100 PEIGAPDPMDAEGRIITLEFDDFYVTQVYTPNAG--DQLRRLPERQEWDIKYAEYLASLD 157
Query: 213 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID+++P N+ GFT ER F A+L
Sbjct: 158 RNKPVLATGDYNVAHHEIDLANPA------------SNRR---SAGFTDEERAGFTALL 201
>gi|347525140|ref|YP_004831888.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 27782]
gi|345284099|gb|AEN77952.1| Exodeoxyribonuclease III [Lactobacillus ruminis ATCC 27782]
Length = 254
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 90/195 (46%), Gaps = 40/195 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+ FV+WN N L +K N FS D D +QE ++ + D P HQ
Sbjct: 1 MNFVSWNVNGLRAVLKKN---FSEVFEKLDADFFCIQETKLQEGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K +P+ VS+ ++ +
Sbjct: 53 -------------------------YWNYAERKGYSGTAIFTKH--EPQSVSYGIQNSEF 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWC 219
+E GRVI E+ +FYL+ Y+PN+ K + F R D + KP+I C
Sbjct: 86 DHE--GRVITLEYASFYLVCCYSPNSQPKLKRLDF-RMGFEDAFLNYLNALKEKKPVIMC 142
Query: 220 GDLNVSHEEIDVSHP 234
GDLNV+HEEID+ +P
Sbjct: 143 GDLNVAHEEIDLKNP 157
>gi|417937397|ref|ZP_12580697.1| exodeoxyribonuclease III [Streptococcus infantis SK970]
gi|343391661|gb|EGV04234.1| exodeoxyribonuclease III [Streptococcus infantis SK970]
Length = 275
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQDVLQTLVAEDADIIAIQETKLSATGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ ++ F Y+ W A YAGT L KK P +S
Sbjct: 58 EVLEEL------------------FPGYEHTWRSSQEPARKGYAGTMFLYKKELTPT-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+TF++ Y PN G + + R+ WD + E++ Q
Sbjct: 99 FPEIGAPSTMDSEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 157 DKQKPVLSTGDYNVAHKEIDLANP------------ASNRR---SPGFTDEEREGFTNLL 201
>gi|291545257|emb|CBL18366.1| exodeoxyribonuclease III [Ruminococcus champanellensis 18P13]
Length = 256
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 97/232 (41%), Gaps = 57/232 (24%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
+K ++WN N L R K F F D D +QE ++ A +
Sbjct: 1 MKLISWNVNGLRACREKG----FEAFFAQEDADFFCIQETKLQAGQIQ------------ 44
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
L P + Y W AD K Y+GTA+ K + F L
Sbjct: 45 --------------LELPGYNQY---WHYADKKGYSGTAVFTKHIPLSVQRDFGLPA--- 84
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
+ +GRV+ E+ FYL+N Y PN+ K E R +W+ +++++L KP+I+
Sbjct: 85 -HNGEGRVLTLEYPDFYLVNAYVPNS--KRELLRLDYRMEWEDALRQYLLGLDARKPVIY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
CGDLNV+H EID+ +P K + GFT ER R +L
Sbjct: 142 CGDLNVAHREIDLKNP---------------KSNRRNAGFTDEERGRLSTLL 178
>gi|423068996|ref|ZP_17057784.1| exodeoxyribonuclease [Streptococcus intermedius F0395]
gi|355365396|gb|EHG13119.1| exodeoxyribonuclease [Streptococcus intermedius F0395]
Length = 275
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 104/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVGLDADIIAIQETKLSANGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D+ F +Y+ W A YAGT L K+ PK ++
Sbjct: 58 KVLDEL------------------FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+ F++ Y PN G + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDSEGRIITLEFDNFFVTQVYTPNAG--DGLKRLVERQVWDKKYADYLTAL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DIEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
>gi|325285209|ref|YP_004260999.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
gi|324320663|gb|ADY28128.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
Length = 254
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 94/192 (48%), Gaps = 37/192 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+ V+WN N + VK EF + +PD++ +QE T
Sbjct: 1 MHIVSWNVNGVRAVVK---KEFFESVKYMNPDILCIQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA E + +ALS P +N+ + + A+ K Y+GTA L K +E
Sbjct: 37 KAQDNE---VAKALS--PLENFSLASNSANKKGYSGTATLSSTKPLTIKADIGIEA---- 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ E+E FYL+N Y PN+G K + + R++WDK +++ KP+I C
Sbjct: 88 HDTEGRVLCTEYENFYLVNVYVPNSGQKLDR--LEYRKQWDKDFLDYLKNLEKKKPVIAC 145
Query: 220 GDLNVSHEEIDV 231
GD NV+H+ ID+
Sbjct: 146 GDFNVAHKAIDL 157
>gi|420427852|ref|ZP_14926893.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
gi|393040038|gb|EJB41059.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
Length = 248
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 109/240 (45%), Gaps = 57/240 (23%)
Query: 45 VTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKAS 104
++WN N L + F +F + D D+ +QE +M
Sbjct: 2 ISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM---------------------- 36
Query: 105 REEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEP 163
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +++
Sbjct: 37 QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDK 85
Query: 164 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 222
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGDL
Sbjct: 86 EGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDL 143
Query: 223 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FLCFY 280
NV+H EID+ +P K + GF+ ER++F +L I F FY
Sbjct: 144 NVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAGFIDTFRYFY 188
>gi|322388347|ref|ZP_08061951.1| exodeoxyribonuclease [Streptococcus infantis ATCC 700779]
gi|321141019|gb|EFX36520.1| exodeoxyribonuclease [Streptococcus infantis ATCC 700779]
Length = 340
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 108/243 (44%), Gaps = 44/243 (18%)
Query: 36 NSKKDPLKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK 88
N K + +K ++WN +SL R K + + + D+IA+QE ++ A G
Sbjct: 60 NEKVNIMKLISWNIDSLNAALTSDSARAKLSQDVLQTLVAE-NADIIAIQETKLSATG-- 116
Query: 89 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK 148
K H E+ ++ E R+ P K Y AGT L KK P
Sbjct: 117 -PTKKHLEVLEELFPGYENT---WRSSQEPARKGY-----------AGTMFLYKKELTPT 161
Query: 149 KVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV 208
+SF + +GR+I EF+TF++ Y PN G + + R+ WD + E++
Sbjct: 162 -ISFPEIGAPSTMDSEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYL 218
Query: 209 LQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
Q KP++ GD NV+H+EID+++P N+ PGFT ER+ F
Sbjct: 219 AQLDKQKPVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEEREGFT 263
Query: 268 AIL 270
+L
Sbjct: 264 NLL 266
>gi|357041996|ref|ZP_09103703.1| exodeoxyribonuclease [Prevotella histicola F0411]
gi|355370010|gb|EHG17399.1| exodeoxyribonuclease [Prevotella histicola F0411]
Length = 249
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 103/236 (43%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V +F D D +QE +M G D
Sbjct: 1 MKLISWNVNGLRACVG---KDFEQQFKDLDADFFCIQETKMQD-GQLDIS---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y+ +W+ A+ K Y+GTA+ K +P VS+ ++ +
Sbjct: 47 ------------------FPGYESYWNYAEKKGYSGTAIFTKH--KPLSVSYGIDIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E + F+L+ Y PN+ ++ + R KW+ Q ++ + K P+I C
Sbjct: 85 HDHEGRVITLEMDDFFLVTVYTPNS--QDGLRRLEYRMKWEDDFQAYLHKLDAKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+HEEID+ +P K + GFT ER++ +L I
Sbjct: 143 GDMNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTQLLNNGFI 183
>gi|238928084|ref|ZP_04659844.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
gi|238884044|gb|EEQ47682.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
Length = 250
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 101/235 (42%), Gaps = 53/235 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFRELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + +P V++ + +A +
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--VKPLSVAYGIGISA--H 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI EF+ YL+ Y PN K R W+ + F+L KP++ CG
Sbjct: 86 DNEGRVITMEFDDVYLVTVYTPNA--KRALERLDYRMMWEDAFRAFLLGLRAKKPVVVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
DLNV+H EID+ +P K + GFT ER +F +L+ I
Sbjct: 144 DLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELLQAGFI 183
>gi|386760800|ref|YP_006234017.1| ExoA protein [Bacillus sp. JS]
gi|384934083|gb|AFI30761.1| ExoA [Bacillus sp. JS]
Length = 252
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 109/232 (46%), Gaps = 54/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P +V + + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLRVMYGI--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENVFVMTIYTPNSRRGLERIDY--RMQWEEALLSYILELDKKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+H+EID+ +P+ N+++ GF+ ER F +L+
Sbjct: 144 GDLNVAHQEIDLKNPK------------ANRKN---AGFSDQERGAFSRLLE 180
>gi|417936679|ref|ZP_12579986.1| exodeoxyribonuclease III [Streptococcus infantis X]
gi|343400195|gb|EGV12715.1| exodeoxyribonuclease III [Streptococcus infantis X]
Length = 275
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQDVLQTLVAEDADIIAIQETKLSATGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ ++ F Y+ W A YAGT L KK P +S
Sbjct: 58 EVLEEL------------------FPGYENTWRSSQEPARKGYAGTMFLYKKELTPT-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+TF++ Y PN G + + R+ WD + E++ Q
Sbjct: 99 FPEIGAPSTMDSEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEEREGFTNLL 201
>gi|332654136|ref|ZP_08419880.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
gi|332517222|gb|EGJ46827.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
Length = 252
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 54/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K F +F PD LQE +M G D L+
Sbjct: 1 MKLISWNVNGLRACLKKG---FLDFYQEQKPDFCCLQETKMEQ-GQADVDLGENMLE--- 53
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+W+ A+ K Y+GTA+ QP V + + K +
Sbjct: 54 ------------------------YWNSAEKKGYSGTAVFTPH--QPLAVRYGMGKE--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GR+I E+E FYL+ Y PN+ + E R +W+ ++ ++++ KP+I+C
Sbjct: 86 HDHEGRLITLEYEKFYLVCCYTPNS--QSELKRLDYRMEWEDDLRAYLMELDKVKPVIYC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H EID+ +P+ ++N GFT ER++ +L
Sbjct: 144 GDLNVAHREIDLKNPK---TNRMNA------------GFTDQEREKMTTLL 179
>gi|258645453|ref|ZP_05732922.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
gi|260402804|gb|EEW96351.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
Length = 254
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 100/233 (42%), Gaps = 55/233 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
LK+++WN N L +K F D D LQE ++ P D P
Sbjct: 4 LKYISWNVNGLRACMKKG---FMQSFKELDADCFCLQETKLQPDQIELDLPGY------- 53
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK 160
YQ W S Y+GTAL K +P V++ + +
Sbjct: 54 ----------------------YQYWNSAVKKGYSGTALFTK--IKPLSVTYGIGME--E 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI A+F L+ Y PN+ + R KW+ ++++L S K P+I C
Sbjct: 88 HDQEGRVITADFNDHCLVTCYTPNS--QRGLARLTYRMKWEDDFKKYLLDLSKKKPVILC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
GDLNV+HEEID+++P A+ +N GFT ER + +L +
Sbjct: 146 GDLNVAHEEIDLANP---ASNHMNA------------GFTDDERNKMTELLSD 183
>gi|15672773|ref|NP_266947.1| exodeoxyribonuclease A [Lactococcus lactis subsp. lactis Il1403]
gi|385830334|ref|YP_005868147.1| exodeoxyribonuclease III [Lactococcus lactis subsp. lactis CV56]
gi|12723711|gb|AAK04889.1|AE006312_9 exodeoxyribonuclease A [Lactococcus lactis subsp. lactis Il1403]
gi|326406342|gb|ADZ63413.1| exodeoxyribonuclease III [Lactococcus lactis subsp. lactis CV56]
Length = 334
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 106/253 (41%), Gaps = 55/253 (21%)
Query: 43 KFVTWNANSL--------------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK 88
KF++WN +SL L VKN + PDV+A+QE ++P+ G K
Sbjct: 53 KFISWNIDSLNAALTGTSERAALSLAVVKN--------LAQAQPDVLAIQETKLPSTGPK 104
Query: 89 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKC 144
A H E+ ++ FK Y+I W A Y+GT +L K+
Sbjct: 105 KA---HLEVLEEL------------------FKGYKIVWRSSVEPARKGYSGTMILYKET 143
Query: 145 FQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 204
++F + +GR+I EF F++ Y PN +E R WD
Sbjct: 144 LPEPVITFPEIDAPEPMDAEGRIITLEFPDFFVTTVYTPNA--QEGLTRLDLRGIWDDNY 201
Query: 205 QEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTI 260
+ ++ KP+ CGD N ++ EID+++P G+ +E +GQ GFT
Sbjct: 202 RNYLTSLDAQKPVFACGDFNAAYTEIDLANPR--GNHNSAGFTDQEREKFGQLLEAGFTD 259
Query: 261 AERKRFGAILKEY 273
R+ G + K Y
Sbjct: 260 TFRQLHGQVEKFY 272
>gi|418965268|ref|ZP_13517046.1| putative exodeoxyribonuclease III [Streptococcus constellatus
subsp. constellatus SK53]
gi|383342863|gb|EID21064.1| putative exodeoxyribonuclease III [Streptococcus constellatus
subsp. constellatus SK53]
Length = 275
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 104/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVGLDADIIAIQETKLSANG---PTKKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D+ F +Y+ W A YAGT L K+ PK ++
Sbjct: 58 KVLDEL------------------FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+ F++ Y PN G + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDSEGRIITLEFDNFFVTQVYTPNAG--DGLKRLVERQVWDKKYADYLTAL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DIEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
>gi|373471031|ref|ZP_09562109.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
gi|371761191|gb|EHO49827.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
Length = 259
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 101/233 (43%), Gaps = 55/233 (23%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
D K ++WN N L V F +F D D+ +QE ++ +
Sbjct: 7 DMKKMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIE----------- 52
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
L P + +Y W+ A K Y+G A+ K +P V++ +
Sbjct: 53 ---------------LDLPGYYDY---WNYAQKKGYSGVAVFTKD--KPLNVTYGI--GI 90
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+++ +GRVI AE+E FY++ Y PN+ + + R W+ +++L+ KP+I
Sbjct: 91 EEHDNEGRVITAEYEDFYMITCYTPNS--QRGLTRLEYRMTWEDAFLKYILELEKNKPVI 148
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
+CGDLNV+H EID+ +P K + GFT ER + IL
Sbjct: 149 FCGDLNVAHTEIDLKNP---------------KTNRKNAGFTDEERAKMDVIL 186
>gi|256827574|ref|YP_003151533.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
gi|256583717|gb|ACU94851.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
Length = 262
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 106/250 (42%), Gaps = 72/250 (28%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ V+WN N L K FS+ T+ DV ALQE ++ QE + D
Sbjct: 1 MRLVSWNVNGLRAAEKKG---FSDIFTSLKADVFALQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ F +Y+ WS A+ K Y+GTA+ ++ +P +V L L
Sbjct: 46 E-----------------FPDYESHWSYAERKGYSGTAVYARQ--KPLQVLHGLGVPHLD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG------- 213
E GR+ EF F+ ++ Y PN + E R +WD ++F C G
Sbjct: 87 TE--GRICALEFPEFWFVDVYTPNA--QNELARIDHRMEWDDAFRDF---CKGLEKGTTP 139
Query: 214 --------KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKR 265
KP+I CGD NV+HEEID+ +P K + G GF+ ER++
Sbjct: 140 LGPDTAQPKPVIMCGDFNVAHEEIDLKNP---------------KSNRGNAGFSDEEREK 184
Query: 266 FGAILKEYLI 275
F +L +
Sbjct: 185 FTKLLDAGFV 194
>gi|321313648|ref|YP_004205935.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430756766|ref|YP_007207426.1| exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
gi|320019922|gb|ADV94908.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430021286|gb|AGA21892.1| Exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
Length = 252
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 106/232 (45%), Gaps = 54/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P +V + + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGI--GVEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENVFVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+H+EID+ +P K + GF+ ER+ F L+
Sbjct: 144 GDLNVAHQEIDLKNP---------------KANRNNAGFSDQEREAFTRFLE 180
>gi|391340077|ref|XP_003744372.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Metaseiulus occidentalis]
Length = 347
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 116/253 (45%), Gaps = 60/253 (23%)
Query: 29 TETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK 88
T +S + +K K VTWN N + +KN E+ I D DV LQE
Sbjct: 82 TRIASSDYGRKGSWKIVTWNVNGIRSWLKNGGLEY---IEEEDADVYCLQE--------- 129
Query: 89 DAPKNHQELKDDTKASREEKLILMRALSSPP----FKNYQIWWSLADSK-YAGTALLVKK 143
TK S EEKL PP +K Y+ ++ D + Y+G ++ +K
Sbjct: 130 ------------TKCS-EEKL--------PPEVTNYKGYKSYFLAGDKEGYSGVGIMSRK 168
Query: 144 CFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR 203
+ SLE+ ++ +GRVI EFE F+L+N+Y PN G + R WD+
Sbjct: 169 TPLNVEYGLSLEE----HDSEGRVITLEFEEFFLVNSYVPNAGRGLVRLDY--RLTWDRD 222
Query: 204 IQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAE 262
+++++ K +I GDLNV+H EID+ +P+ NK++ GFT E
Sbjct: 223 FRKYLVGLKKKKSVILTGDLNVAHNEIDLKNPK------------TNKKN---AGFTEEE 267
Query: 263 RKRFGAILKEYLI 275
R+ +L+E +
Sbjct: 268 RQGLTDLLEEGFV 280
>gi|419778678|ref|ZP_14304565.1| exodeoxyribonuclease III [Streptococcus oralis SK10]
gi|383187100|gb|EIC79559.1| exodeoxyribonuclease III [Streptococcus oralis SK10]
Length = 275
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 106/236 (44%), Gaps = 42/236 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ E + T + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVTENADIIAIQETKLSAKG---PTKKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
E+ ++ E R+ P K Y AGT L KK P +SF
Sbjct: 58 EILEELFLGYENT---WRSSQEPARKGY-----------AGTMFLYKKELTPA-ISFPEI 102
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 214
+ +GR+I EF+TF++ Y PN G + + R+ WD + E++ Q K
Sbjct: 103 GAPSTMDLEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLAQLDKEK 160
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
P++ GD NV+H+EID+++P N+ PGFT ER F +L
Sbjct: 161 PVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEERAGFTNLL 201
>gi|381150965|ref|ZP_09862834.1| exodeoxyribonuclease III [Methylomicrobium album BG8]
gi|380882937|gb|EIC28814.1| exodeoxyribonuclease III [Methylomicrobium album BG8]
Length = 254
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 37/196 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + R F+ + D D + LQE +
Sbjct: 1 MKIVSWNVNGI--RAVQG-KGFAETLARLDADCLLLQETK-------------------A 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ + EK+ + Y I+ + A+ K Y+G +L+ + +P V + +
Sbjct: 39 QVDQIEKV-------TADIDGYHIYSNCAERKGYSGVSLMSRA--EPLAVVKDI--GIAE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI AEFE F+L+N Y PN+G +E RR WD ++L+ S KP+I C
Sbjct: 88 HDREGRVIAAEFEHFHLVNVYVPNSG--QELVRLDYRRTWDAEFLTYLLKLESRKPVIVC 145
Query: 220 GDLNVSHEEIDVSHPE 235
GD NV+H EID++ P+
Sbjct: 146 GDFNVAHREIDIARPK 161
>gi|340719564|ref|XP_003398220.1| PREDICTED: LOW QUALITY PROTEIN: recombination repair protein 1-like
[Bombus terrestris]
Length = 357
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 40/197 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN + + +K N E+ + D D+IALQE + D
Sbjct: 105 LKISSWNVSGIRAVIKKNGMEY---MLKEDADIIALQETKC----------------DKN 145
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 159
K E KL N ++ L K Y G AL K+ +P + + L+ +
Sbjct: 146 KLPEEVKL------------NGYHYYFLESKKPGYCGVALYTKE--KPIDIKYGLDN--V 189
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GR+I AE+ FYL+N Y PN G K + +R KW++ + +V KP+I
Sbjct: 190 EFDSEGRLITAEYSNFYLINVYVPNAGQKLI--TLPKRLKWNEAFKAYVKNLDEKKPVII 247
Query: 219 CGDLNVSHEEIDVSHPE 235
CGD+NV+H++ID+ +P+
Sbjct: 248 CGDMNVAHQKIDLKNPD 264
>gi|163814023|ref|ZP_02205416.1| hypothetical protein COPEUT_00176 [Coprococcus eutactus ATCC 27759]
gi|158450717|gb|EDP27712.1| exodeoxyribonuclease III [Coprococcus eutactus ATCC 27759]
Length = 257
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 57/242 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N + F +F + D D+ +QE +M
Sbjct: 8 KLISWNVNGIRACAGKG---FMDFFNSIDADIFCIQESKM-------------------- 44
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E +L L P + Y W+ AD K Y+GTA+ K+ K +S + ++
Sbjct: 45 --QEGQL----TLDMPGYYQY---WNYADKKGYSGTAIFTKE----KSLSETKGIGIDEH 91
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 220
+ +GRVI E+E FY++ Y PN+ + E R KW+ + ++ + KP+I CG
Sbjct: 92 DHEGRVITLEYENFYMVTVYTPNS--QNELARLDYRMKWEDDFRAYLKKLEENKPVIVCG 149
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FLC 278
D+NV+H EID+ +P K + GFT ER++ +L + I F
Sbjct: 150 DMNVAHNEIDLKNP---------------KTNRKNAGFTDEEREKMTVLLDDGFIDTFRY 194
Query: 279 FY 280
FY
Sbjct: 195 FY 196
>gi|406931444|gb|EKD66730.1| hypothetical protein ACD_49C00017G0002 [uncultured bacterium (gcode
4)]
Length = 255
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 39/214 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +++N N + ++ F +++ + +PD+I LQEV+ A +N +K D
Sbjct: 1 MKLISFNVNGIRSNIQKG---FLDYLISENPDIIGLQEVK--------AQENELPIKIDL 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y+I+W+ A+ K Y+GTA+ K +P VS+ L +
Sbjct: 50 ASLW-----------------YEIYWNSANKKWYSGTAIFTK--IKPLSVSYWL--WLAE 88
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ + R+I EFE FY +N Y PN K E R+ WD +++ + KP+I C
Sbjct: 89 HDEEWRIITLEFENFYFVNVYTPNA--KRELERLDYRQLWDSLFLDYLKRLEQNKPVITC 146
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW 253
D NV+H+EID+++P+ K N P + +W
Sbjct: 147 WDFNVAHQEIDLTNPK---TNKWNAGFTPEEREW 177
>gi|159490968|ref|XP_001703445.1| hypothetical protein CHLREDRAFT_143864 [Chlamydomonas reinhardtii]
gi|158280369|gb|EDP06127.1| predicted protein [Chlamydomonas reinhardtii]
Length = 437
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 101/239 (42%), Gaps = 49/239 (20%)
Query: 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
PL ++WN L +K S+ ++ +V+ LQE ++ A NHQ+
Sbjct: 141 PLNILSWNVAGLRALLKKTPDAVSSLVSREAAEVVCLQEHKLQA--------NHQK---- 188
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTAL- 159
EE L L + + W+ + +K + + V P V L
Sbjct: 189 ---EVEELLGL---------QGWHHAWAFSTAKLGYSGVSVHTRSPPLSVVVGLGHGGPG 236
Query: 160 ------KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQC 211
++E +GRV+ E E +L+N Y PN+G + + R +WD F+ LQ
Sbjct: 237 AADPDPEHEGEGRVVTVELEGLFLVNVYVPNSGEGLKRLDY-RVGRWDGAFAAFLQGLQA 295
Query: 212 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GKP++ GDLN +H+EID+ P K + GFT ER+ FG +L
Sbjct: 296 RGKPVVVTGDLNCAHKEIDIHAP---------------KTNLKSAGFTPEERESFGRLL 339
>gi|420446253|ref|ZP_14945154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
gi|393059442|gb|EJB60322.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
Length = 236
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 54/222 (24%)
Query: 63 FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122
F +F + D DV +QE +M + ++ FK
Sbjct: 5 FMDFFNSVDADVFCIQESKM-----------------------------QQEQNTFEFKG 35
Query: 123 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 181
Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y
Sbjct: 36 YFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGID--IKEHDKEGRVITCEFESFYLVNVY 91
Query: 182 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 92 TPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP------ 143
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FLCFY 280
K + GF+ ERK+F +L I F FY
Sbjct: 144 ---------KTNRKNAGFSDEERKKFSELLNAGFIDTFRYFY 176
>gi|350268379|ref|YP_004879686.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349601266|gb|AEP89054.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 252
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 39/195 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P V + + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--KPLHVMYGI--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN+ K R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENLFVMTVYTPNS--KRGLERIDYRMQWEEALLSYILELDKKKPVILC 143
Query: 220 GDLNVSHEEIDVSHP 234
GDLNV+H+EID+ +P
Sbjct: 144 GDLNVAHQEIDLKNP 158
>gi|325679379|ref|ZP_08158964.1| exodeoxyribonuclease III [Ruminococcus albus 8]
gi|324108976|gb|EGC03207.1| exodeoxyribonuclease III [Ruminococcus albus 8]
Length = 250
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 54/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N ++ F +F + D D+ +QE +M + +P+ +
Sbjct: 1 MKLISWNVNGFRACLQKG---FEDFFKSADADIFCIQETKMQPDQADFSPEGY------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
++ + S Y+GTA+ K +PK V++ L +
Sbjct: 51 ---------------------HKYFHSAVKKGYSGTAVYTKN--EPKAVTYGLNGA---H 84
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+GRVI E++ FY + Y PN + E R +++ ++ ++ KP+I+CG
Sbjct: 85 TDEGRVITCEYDDFYFVCCYVPNA--QNELKRIDYRMEFEDDMRAYLCGLDKLKPVIYCG 142
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+HEEID+ +P K + G GF+ ER +F +L
Sbjct: 143 DLNVAHEEIDLKNP---------------KSNVGNAGFSDQERGKFTELL 177
>gi|167748893|ref|ZP_02421020.1| hypothetical protein ANACAC_03667 [Anaerostipes caccae DSM 14662]
gi|317470265|ref|ZP_07929659.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
gi|167651863|gb|EDR95992.1| exodeoxyribonuclease III [Anaerostipes caccae DSM 14662]
gi|316902238|gb|EFV24158.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
Length = 251
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 109/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ V+WN N L VK F + + D D+ +QE ++ QE + D
Sbjct: 2 IQLVSWNVNGLRACVKKG---FLDVMEQLDADIFCIQETKL------------QEGQID- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K +P V +
Sbjct: 46 -------------LELPDYYQY---WNYAEKKGYSGTAVFTK--IKPLSVKNGIGVDEFD 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
+E GRVI EF+ ++L+ Y PN+ + E R W++ +E++L+ KP+I C
Sbjct: 88 HE--GRVITLEFDDYFLVTCYTPNS--QSELARLSYRMDWEENFREYLLKLEEDKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GFT ER++F +L+ I F
Sbjct: 144 GDLNVAHTEIDLKNP---------------KTNRKNAGFTDEEREKFTKLLEAGFIDTFR 188
Query: 278 CFY 280
FY
Sbjct: 189 HFY 191
>gi|352683918|ref|YP_004895902.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
gi|350278572|gb|AEQ21762.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
Length = 258
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 102/233 (43%), Gaps = 53/233 (22%)
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELK 98
++ +K VTWN N L + F + D D+I++QE
Sbjct: 5 RNLMKLVTWNVNGLRACMNKG---FKESMEKLDADIISIQE------------------- 42
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTA 158
TK RE+ + P + Y+ W S Y+GTA+ + +P V++ L
Sbjct: 43 --TKMQREQA-----SFDFPGY--YEYWNSAVKKGYSGTAIFSR--IKPLSVTYGL--GI 89
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+++ +GRVI AE++ FYL+N Y PN+ + E R W+ Q + S K I
Sbjct: 90 EEHDQEGRVITAEYDDFYLVNVYTPNS--QRELARLSYRMAWEDAFQAYCEDLSKKKTTI 147
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
CGD+NV+HE ID+ +P+ + GF+ ER++ A L
Sbjct: 148 VCGDMNVAHEPIDLKNPD---------------SNHHNAGFSDEERQKLDAFL 185
>gi|418030667|ref|ZP_12669152.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|351471726|gb|EHA31839.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
Length = 252
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 95/195 (48%), Gaps = 39/195 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P +V + + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGI--GVEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENVFVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILC 143
Query: 220 GDLNVSHEEIDVSHP 234
GDLNV+H+EID+ +P
Sbjct: 144 GDLNVAHQEIDLKNP 158
>gi|335045714|ref|ZP_08538737.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 108 str.
F0425]
gi|333759500|gb|EGL37057.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 108 str.
F0425]
Length = 251
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 53/229 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L + N+ E +F D D+ LQE ++ A +
Sbjct: 3 KLISWNVNGLRAVMGKNFME--DF-RKLDADIFCLQETKLQAGQIE-------------- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYE 162
L P + +Q W Y+GTA+ K+ +P VS+ + +++
Sbjct: 46 ------------LDLPGY--FQYWNYAVKKGYSGTAIFTKE--EPISVSYGI--GVEEHD 87
Query: 163 PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 221
+GRVI AEF+ FYL+ Y PN+ + E R +++ ++L K P+++CGD
Sbjct: 88 QEGRVITAEFKDFYLITVYVPNS--QGELKRLPYRMEFEDAFLSYILNLEKKKPVVYCGD 145
Query: 222 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
LNV+HEEID+ +P+ + GF+ ER +F +L
Sbjct: 146 LNVAHEEIDLKNPD---------------TNHLSAGFSDEERAKFSRVL 179
>gi|290986733|ref|XP_002676078.1| predicted protein [Naegleria gruberi]
gi|284089678|gb|EFC43334.1| predicted protein [Naegleria gruberi]
Length = 340
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 104/228 (45%), Gaps = 48/228 (21%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
KF++WN N + + R + N+ + + +P + LQE + L +
Sbjct: 75 FKFISWNVNGISAVFRKEPNYLKM--LVEKEEPTCLCLQETK---------------LSE 117
Query: 100 DTKASREEKLILMRALSSPPFKNY--QIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT 157
D K S ++ FKNY S A Y+GTA V K PK ++
Sbjct: 118 DVKLSE---------MAQYKFKNYIGHFNTSRARKGYSGTACFVLK-HGPKVLNVKFGIG 167
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPL 216
K++ +GR I E+E FYL+NTY PN+G + + R ++WD + ++ + KP+
Sbjct: 168 KDKHDLEGRTITVEYEDFYLVNTYCPNSGQNLDRLEY-RTKEWDVDLLKYFEKLEKKKPI 226
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERK 264
IW GDLNV+ E+D+ P + + PGFT+ ER+
Sbjct: 227 IWGGDLNVAISEMDIHDPLTLSKS---------------PGFTLEERQ 259
>gi|363896773|ref|ZP_09323322.1| exodeoxyribonuclease [Oribacterium sp. ACB7]
gi|361960338|gb|EHL13587.1| exodeoxyribonuclease [Oribacterium sp. ACB7]
Length = 251
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 53/229 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L + N+ E +F D D+ LQE ++ A +
Sbjct: 3 KLISWNVNGLRAVMGKNFME--DF-RKLDADIFCLQETKLQAGQIE-------------- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYE 162
L P + +Q W Y+GTA+ K+ +P VS+ + +++
Sbjct: 46 ------------LDLPGY--FQYWNYAVKKGYSGTAIFTKE--EPLSVSYGI--GVEEHD 87
Query: 163 PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 221
+GRVI AEF+ FYL+ Y PN+ + E R +++ ++L K P+++CGD
Sbjct: 88 QEGRVITAEFKDFYLITVYVPNS--QGELKRLPYRMEFEDAFLNYILNLEKKKPVVYCGD 145
Query: 222 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
LNV+HEEID+ +P+ + GF+ ER +F +L
Sbjct: 146 LNVAHEEIDLKNPD---------------TNHLSAGFSDEERAKFSRVL 179
>gi|227498619|ref|ZP_03928763.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904075|gb|EEH89993.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 251
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 100/230 (43%), Gaps = 53/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K VTWN N L + F + D D+I++QE T
Sbjct: 1 MKLVTWNVNGLRACMNKG---FKESMEKLDADIISIQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
K RE+ + P + Y+ W S Y+GTA+ + +P V++ L ++
Sbjct: 37 KMQREQA-----SFDFPGY--YEYWNSAVKKGYSGTAIFSR--IKPLSVTYGL--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AE++ FYL+N Y PN+ + E R W+ Q + S K I CG
Sbjct: 86 DQEGRVITAEYDDFYLVNVYTPNS--QRELARLSYRMAWEDAFQAYCEDLSKKKTTIVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
D+NV+HE ID+ +P+ + GF+ ER++ A L
Sbjct: 144 DMNVAHEPIDLKNPD---------------SNHHNAGFSDEERQKLDAFL 178
>gi|118375590|ref|XP_001020979.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila]
gi|89302746|gb|EAS00734.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila
SB210]
Length = 396
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 108/260 (41%), Gaps = 47/260 (18%)
Query: 15 KKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDV 74
KKP K TE + +K WN N L +K + +I +PD+
Sbjct: 90 KKPETQVEDKVEINTELGDGIWKDRQNIKIACWNVNGLRAVLKR--EDLQKYIKQENPDI 147
Query: 75 IALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIW-WSLADSK 133
+ L E ++ E I + P YQ W + + K
Sbjct: 148 LCLNETKID----------------------ESNFIKEKVYKDIPSGYYQYWNFCIPPIK 185
Query: 134 -YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEEN 192
Y+G ++ K+ K +S ++E +GRV+ AEF+ FYL+ Y PN G +
Sbjct: 186 GYSGVSIFSKE----KVISIKKGIDIAEHENEGRVLTAEFDKFYLVVVYVPNAGSELVRL 241
Query: 193 SFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKE 251
+ R +DK Q ++ Q K +I CGDLNV+H+EID+++P K
Sbjct: 242 DY-RVNSFDKDFQNYLNQLKLKKNVILCGDLNVAHQEIDIANP---------------KS 285
Query: 252 DWGQPGFTIAERKRFGAILK 271
+ PGFTI ER F L+
Sbjct: 286 NRNSPGFTIEERNSFSKFLE 305
>gi|384108936|ref|ZP_10009823.1| exodeoxyribonuclease III [Treponema sp. JC4]
gi|383869507|gb|EID85119.1| exodeoxyribonuclease III [Treponema sp. JC4]
Length = 276
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 106/241 (43%), Gaps = 54/241 (22%)
Query: 43 KFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQE 96
KF++WN +SL + + + I +D D+IA+QE ++PA G H E
Sbjct: 3 KFISWNIDSLNAALTSTSARAVMSQDVLRKIAAYDADIIAIQETKLPAEGPS---ATHVE 59
Query: 97 LKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSF 152
L L S F Y W A YAGT +L K+ + +K+
Sbjct: 60 L-----------------LKSY-FTGYHFEWVSSVPPAKKGYAGTMILYKEGLKAEKIVP 101
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
L + +GR+I EF+ FY +N Y PN+G + + R+ WD +++
Sbjct: 102 KLGAPD-TMDDEGRLIALEFDNFYFVNVYTPNSG--DGLKRLKERQLWDSLYADYLSSLD 158
Query: 213 G-KPLIWCGDLNVSHEEIDVSHP--EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
K +I CGD NV+H+EID+++P F+A GFT ER+ F +
Sbjct: 159 QKKAVIACGDFNVAHKEIDLANPASNHFSA-----------------GFTDEEREGFTNL 201
Query: 270 L 270
L
Sbjct: 202 L 202
>gi|418039226|ref|ZP_12677532.1| Exodeoxyribonuclease III [Lactococcus lactis subsp. cremoris CNCM
I-1631]
gi|354692342|gb|EHE92172.1| Exodeoxyribonuclease III [Lactococcus lactis subsp. cremoris CNCM
I-1631]
Length = 296
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 106/253 (41%), Gaps = 55/253 (21%)
Query: 43 KFVTWNANSL--------------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK 88
KF++WN +SL L VKN + PDV+A+QE ++P+ G K
Sbjct: 15 KFISWNIDSLNAALTGTSERAALSLAVVKN--------LAQAQPDVLAIQETKLPSTGPK 66
Query: 89 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKC 144
A H E+ ++ FK Y+I W A Y+GT +L K+
Sbjct: 67 KA---HLEVLEEL------------------FKGYKIVWRSSVEPARKGYSGTMILYKET 105
Query: 145 FQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 204
++F + +GR+I EF F++ Y PN +E R WD
Sbjct: 106 LPEPVITFPEIDAPEPMDAEGRIITLEFPDFFVTTVYTPNA--QEGLTRLDLRGIWDDNY 163
Query: 205 QEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTI 260
+ ++ KP+ CGD N ++ EID+++P G+ +E +GQ GFT
Sbjct: 164 RNYLTSLDAQKPVFACGDFNAAYTEIDLANPR--GNHNSAGFTDQEREKFGQLLEAGFTD 221
Query: 261 AERKRFGAILKEY 273
R+ G + K Y
Sbjct: 222 TFRQLHGQVEKFY 234
>gi|357236053|ref|ZP_09123396.1| putative Exodeoxyribonuclease [Streptococcus criceti HS-6]
gi|356884035|gb|EHI74235.1| putative Exodeoxyribonuclease [Streptococcus criceti HS-6]
Length = 276
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 49/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRQVIDTLIAQDADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
L +D F +YQI W A YAGT L K ++
Sbjct: 58 TLLEDY------------------FPDYQITWRSSVEPARKGYAGTMFLYKANLPKPIIT 99
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + + R+ WD + E++ Q
Sbjct: 100 YPEIDAPSTMDKEGRIITLEFDNFFVTQVYTPNAG--DGLKRLEERQLWDIKYAEYLAQL 157
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 158 DDQKPVLASGDYNVAHKEIDLANPS------------SNRR---SPGFTDEEREGFTNLL 202
>gi|449096551|ref|YP_007429042.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
gi|449030466|gb|AGE65705.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
Length = 252
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 95/195 (48%), Gaps = 39/195 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P +V + + +
Sbjct: 51 ---------------------YHVYWNYALKKGYSGTAVFSKQ--EPLQVIYGI--GVEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENVFVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILC 143
Query: 220 GDLNVSHEEIDVSHP 234
GDLNV+H+EID+ +P
Sbjct: 144 GDLNVAHQEIDLKNP 158
>gi|313891277|ref|ZP_07824895.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
gi|416852294|ref|ZP_11909439.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus LQ 940-04]
gi|313120344|gb|EFR43465.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
gi|356739783|gb|EHI65015.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus LQ 940-04]
Length = 275
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 107/242 (44%), Gaps = 50/242 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVIDRLVSEDADIIAIQETKLSATGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGTALLVKKCFQPKKVS 151
E IL F NY +W S A YAGT L K+ P V+
Sbjct: 58 ET------------ILSY------FPNYLHVWRSSVEPARKGYAGTMFLYKQTLNPV-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EFE F++ Y PN G + R++WD + +++ Q
Sbjct: 99 FPEIGAPTTMDSEGRIITLEFEDFFVTQVYTPNAG--DGLRRLADRQEWDIKYADYLTQL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ GFT ER F A+L
Sbjct: 157 DAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SAGFTDEERAGFTALL 201
Query: 271 KE 272
++
Sbjct: 202 EK 203
>gi|225159347|ref|ZP_03725644.1| DNA-(apurinic or apyrimidinic site) lyase [Diplosphaera
colitermitum TAV2]
gi|224802053|gb|EEG20328.1| DNA-(apurinic or apyrimidinic site) lyase [Diplosphaera
colitermitum TAV2]
Length = 259
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 103/238 (43%), Gaps = 57/238 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + ++ ++I D I LQE +K P + Q ++
Sbjct: 1 MKLVSWNVNGVRAVLQKG---LLDYIAASGADAICLQE-------TKCQPGDVQHVEWPA 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKK------CFQPKKVSFSL 154
Y W+ A + Y+GTA+ + P V+ +
Sbjct: 51 --------------------GYTAHWNAAQKRGYSGTAIFTRMGAGSSPALTPLAVTAGI 90
Query: 155 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SG 213
+ +++ +GRV+ AEF FYL+N Y PN + E R++WD ++ +
Sbjct: 91 GRD--EHDTEGRVLTAEFPDFYLVNAYVPNA--QPELARLPYRQRWDADFLAYLRGLETR 146
Query: 214 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP++ CGDLNV+HEEID++ P KE+ G PGF+ ER F L+
Sbjct: 147 KPVVMCGDLNVAHEEIDLARP---------------KENVGNPGFSNEERAGFREFLR 189
>gi|449980965|ref|ZP_21817505.1| putative exodeoxyribonuclease III [Streptococcus mutans 5SM3]
gi|450134133|ref|ZP_21870968.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML8]
gi|449149929|gb|EMB53710.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML8]
gi|449176153|gb|EMB78512.1| putative exodeoxyribonuclease III [Streptococcus mutans 5SM3]
Length = 275
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 107/242 (44%), Gaps = 50/242 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + +T D D++A+QE ++ A G K+ +
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLTEQDADILAIQETKLSAKGP--TKKHLR 58
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
LKD F +Y + W A YAGT L K QP ++
Sbjct: 59 ILKD-------------------YFPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 271 KE 272
++
Sbjct: 202 EQ 203
>gi|350410618|ref|XP_003489091.1| PREDICTED: recombination repair protein 1-like [Bombus impatiens]
Length = 334
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 40/197 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN + + +K N E+ + D D+IALQE + D
Sbjct: 82 LKISSWNVSGIRAVIKKNGMEY---MLKEDADIIALQETKC----------------DKN 122
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 159
K E KL N ++ L K Y G AL K+ +P + + L+ +
Sbjct: 123 KLPEEVKL------------NGYHYYFLESKKPGYCGVALYTKE--KPIDIKYGLDN--V 166
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GR+I AE+ FYL+N Y PN G K + +R KW++ + +V KP+I
Sbjct: 167 EFDSEGRLITAEYSNFYLVNVYVPNAGQKLI--TLPKRLKWNEAFKAYVKNLDEKKPVII 224
Query: 219 CGDLNVSHEEIDVSHPE 235
CGD+NV+H++ID+ +P+
Sbjct: 225 CGDMNVAHQKIDLKNPD 241
>gi|225376286|ref|ZP_03753507.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
gi|225211932|gb|EEG94286.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
Length = 255
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 42/196 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+KF++WN N L ++ F +F D D +QE ++ + D P HQ
Sbjct: 5 MKFISWNVNGLRACMQKG---FLDFFNEVDADFFCVQETKLQEGQIALDLPGYHQ----- 56
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K +P VS+ +
Sbjct: 57 -------------------------FWNYAEKKGYSGTAIFTKH--EPLSVSYGI--GIP 87
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
+++ +GRVI E++ FYL+ Y PN+ + E R +W++ F+ + KP+I
Sbjct: 88 EHDHEGRVITLEYDAFYLVTCYTPNS--QNELARLPYRMQWEEDFLAFLKRLDEVKPVIV 145
Query: 219 CGDLNVSHEEIDVSHP 234
CGDLNV+HEEID+ +P
Sbjct: 146 CGDLNVAHEEIDLKNP 161
>gi|400289764|ref|ZP_10791791.1| putative exodeoxyribonuclease III [Streptococcus ratti FA-1 = DSM
20564]
gi|399920555|gb|EJN93372.1| putative exodeoxyribonuclease III [Streptococcus ratti FA-1 = DSM
20564]
Length = 275
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFD------PDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ D PD+IA+QE ++PA G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVIDTLAEKKPDIIAIQETKLPAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ + F +Y I W A YAGT + K +P V+
Sbjct: 58 EILKNY------------------FADYDIAWRSSVEPARKSYAGTIFIYKSELKPT-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + + R+ WD++ ++
Sbjct: 99 YPNIGAPATMDAEGRIITLEFDHFFVTQVYTPNAG--DGLRRLEERQIWDEKYAAYLADL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLAAGDYNVAHQEIDLAHP------------ASNRR---SPGFTDEERAGFTNLL 201
>gi|257413807|ref|ZP_04744296.2| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|257202214|gb|EEV00499.1| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|291538795|emb|CBL11906.1| exodeoxyribonuclease III [Roseburia intestinalis XB6B4]
Length = 256
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 40/199 (20%)
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELK 98
++ +K ++WN N L ++ F +F D D+ +QE ++ QE +
Sbjct: 2 ENTMKLISWNVNGLRACIQKG---FLDFFHETDADIFCIQESKL------------QEGQ 46
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT 157
D P Y +W+ A K Y+GTA+ KK +P V++ +
Sbjct: 47 IDL-----------------PLPGYFSYWNYAKKKGYSGTAIFTKK--EPLNVTYGI--G 85
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPL 216
+++ +GRVI E+ FY++ Y PN+ + E R +W+ + ++ + G KP+
Sbjct: 86 IEEHDKEGRVITLEYPDFYMVTCYTPNS--QNELARLPYRMQWEDDFRAYLKRLDGSKPV 143
Query: 217 IWCGDLNVSHEEIDVSHPE 235
I CGDLNV+HEEID+ +P+
Sbjct: 144 ILCGDLNVAHEEIDLKNPK 162
>gi|319939581|ref|ZP_08013940.1| exodeoxyribonuclease III [Streptococcus anginosus 1_2_62CV]
gi|319811170|gb|EFW07476.1| exodeoxyribonuclease III [Streptococcus anginosus 1_2_62CV]
Length = 275
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 103/240 (42%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVRLDADIIAIQETKLSANGPT---KKH- 56
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
L ++ L F NYQ+ W A YAGT L K P ++
Sbjct: 57 -------------LTILEEL----FPNYQLTWRSSIDPARKGYAGTMFLYKNNLTPI-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+ F++ Y PN G + R+ WD++ +++
Sbjct: 99 FPEIGAPSTMDAEGRIITLEFDNFFVTQVYTPNAG--DGLKRLVERQVWDQKYADYLTTL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DEKKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
>gi|125624555|ref|YP_001033038.1| 3'-exo-deoxyribonuclease [Lactococcus lactis subsp. cremoris
MG1363]
gi|389854927|ref|YP_006357171.1| exodeoxyribonuclease A [Lactococcus lactis subsp. cremoris NZ9000]
gi|124493363|emb|CAL98337.1| 3'-exo-deoxyribonuclease [Lactococcus lactis subsp. cremoris
MG1363]
gi|300071349|gb|ADJ60749.1| exodeoxyribonuclease A [Lactococcus lactis subsp. cremoris NZ9000]
Length = 285
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 106/253 (41%), Gaps = 55/253 (21%)
Query: 43 KFVTWNANSL--------------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK 88
KF++WN +SL L VKN + PDV+A+QE ++P+ G K
Sbjct: 4 KFISWNIDSLNAALTGTSERAALSLAVVKN--------LAQAQPDVLAIQETKLPSTGPK 55
Query: 89 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKC 144
K H E+ ++ FK Y+I W A Y+GT +L K+
Sbjct: 56 ---KAHLEVLEEL------------------FKGYKIVWRSSVEPARKGYSGTMVLYKET 94
Query: 145 FQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 204
++F + +GR+I EF F++ Y PN +E R WD
Sbjct: 95 LPEPVITFPEIDAPEPMDAEGRIITLEFPDFFVTTVYTPNA--QEGLTRLDLRGIWDDNY 152
Query: 205 QEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTI 260
+ ++ KP+ CGD N ++ EID+++P G+ +E +GQ GFT
Sbjct: 153 RNYLTSLDAQKPVFACGDFNAAYTEIDLANPR--GNHNSAGFTDQEREKFGQLLEAGFTD 210
Query: 261 AERKRFGAILKEY 273
R+ G + K Y
Sbjct: 211 TFRQLHGQVEKFY 223
>gi|239624599|ref|ZP_04667630.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520985|gb|EEQ60851.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 251
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 110/245 (44%), Gaps = 63/245 (25%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KF++WN N L V F +F D DV +QE ++ QE + D
Sbjct: 3 KFISWNVNGLRACVGKG---FLDFFKEIDADVFCIQESKL------------QEGQID-- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P + Y W+ A K Y+GTA+ ++ +P VS+ + ++
Sbjct: 46 ------------LDLPGYHQY---WNYALKKGYSGTAMFTRE--EPLSVSYGIGME--EH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG----KPLI 217
+ +GRVI AEF +Y++ Y PN+ ++ R KW+ +F+ G KP++
Sbjct: 87 DTEGRVITAEFPDYYVVTCYTPNS--QDGLARLDYRMKWE---DDFLAYLKGLEKKKPVV 141
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI-- 275
+CGDLNV+H+EID+ +P K + GFT ER +F +L I
Sbjct: 142 FCGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTDLLSAGFIDT 186
Query: 276 FLCFY 280
F FY
Sbjct: 187 FRYFY 191
>gi|81428949|ref|YP_395949.1| exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
gi|78610591|emb|CAI55642.1| Exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
Length = 254
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 54/199 (27%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSK-DAPKNHQEL 97
+KF++WN N L +K +F+TTF D D LQE +M A + D P HQ
Sbjct: 1 MKFISWNVNGLRAVLK------KDFMTTFEQFDADFFCLQETKMQAGQVELDLPGYHQ-- 52
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK 156
+++ A+ K Y+G A+ K +P V++ +++
Sbjct: 53 ----------------------------YFNYAEKKGYSGAAIFTKH--EPLNVTYGIQQ 82
Query: 157 TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-S 212
+++ +GRVI E+ F+L+ Y PN+ +N +R R W+ + +V Q +
Sbjct: 83 P--EHDHEGRVITLEYPQFFLITCYTPNS-----QNQLKRLDYRMTWENAFRAYVQQLGT 135
Query: 213 GKPLIWCGDLNVSHEEIDV 231
KP+I+CGDLNV+HE ID+
Sbjct: 136 QKPVIFCGDLNVAHEAIDL 154
>gi|224024813|ref|ZP_03643179.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
gi|224018043|gb|EEF76047.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
Length = 251
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 107/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L F T D D LQE +M
Sbjct: 1 MKLISWNVNGLRACCDKG---FREAFQTLDADFFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F+ Y +W+ A+ K Y+GTA+ +P V++ L
Sbjct: 39 ---QEGQLDL-------SFEGYTSYWNYAEKKGYSGTAIFTH--LKPLNVTYGLGIDV-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E + FYL+ Y PN+ ++ R W+ + ++L+ K P++ C
Sbjct: 85 HDHEGRVITLEMDNFYLVTVYTPNS--QDGLKRLDYRMTWEDDFRNYLLELDKKKPVLVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P+ ++N GFT ER++F +L I F
Sbjct: 143 GDLNVAHKEIDLKNPK---TNRMN------------AGFTDQEREKFQILLDAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|392947967|ref|ZP_10313585.1| Exodeoxyribonuclease III [Lactobacillus pentosus KCA1]
gi|392436819|gb|EIW14725.1| Exodeoxyribonuclease III [Lactobacillus pentosus KCA1]
Length = 254
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 100/231 (43%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK+ F + D D +QE ++ A G D
Sbjct: 1 MKLISWNVNGLRAAVKHG---FIDIFNEQDADFFCVQETKLQA-GQIDLD---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F YQ +W+ A+ K Y+GTA+ K P V++ + +
Sbjct: 47 ------------------FPGYQQYWNYAERKGYSGTAIFTKHT--PLNVTYGI--GVPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ +Y+L Y PN+G E R+ W+ ++ S KPLI+C
Sbjct: 85 FDTEGRVITLEYADYYVLTCYTPNSG--GELKRLDYRQHWEDAFLTYINSLSANKPLIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+HE ID+ + + + GFT ER +F +L
Sbjct: 143 GDLNVAHENIDLKNW---------------RSNHHSAGFTDEERGKFDRLL 178
>gi|295425010|ref|ZP_06817719.1| exodeoxyribonuclease III [Lactobacillus amylolyticus DSM 11664]
gi|295065328|gb|EFG56227.1| exodeoxyribonuclease III [Lactobacillus amylolyticus DSM 11664]
Length = 275
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 109/249 (43%), Gaps = 46/249 (18%)
Query: 42 LKFVTWNANSL---LLRVKNNWPEFSNFITTFD---PDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L E + PDV+A+QE ++PA G K HQ
Sbjct: 1 MKLISWNIDSLNAALTGQSTRALETRKILERLHDEAPDVLAIQETKLPATGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ + F Y+ +W A YAGT L KK + K S
Sbjct: 58 TILKEM------------------FPEYKYFWRSSEEPARKGYAGTMYLYKKGLE-LKAS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
+ + +GR+I EF TF++ Y PN+G N +R R+ WD+R E++
Sbjct: 99 YPKIGAPEPMDSEGRIITLEFPTFFVTQVYTPNSG-----NGLKRLADRQVWDQRYIEYL 153
Query: 209 LQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTIAERK 264
Q KP++ GD N +H ID+ HPE + G+ ++D+ Q GFT + RK
Sbjct: 154 QQLDKQKPVLASGDFNCAHTPIDLKHPENNHHSA--GFTDEERKDFTQLLDAGFTDSFRK 211
Query: 265 RFGAILKEY 273
G + Y
Sbjct: 212 INGNVEGVY 220
>gi|323340218|ref|ZP_08080482.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|417972789|ref|ZP_12613677.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|323092409|gb|EFZ35017.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|346330854|gb|EGX99085.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
Length = 254
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 42/196 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+ FV+WN N L +K N FS D D +QE ++ + D P HQ
Sbjct: 1 MNFVSWNVNGLRAVLKKN---FSEVFEKLDADFFCIQETKLQEGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K +P+ VS+ + +
Sbjct: 53 -------------------------YWNYAERKGYSGTAIFTKH--EPQSVSYGIHNSEF 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+E GRVI E+ +FYL+ Y+PN+ K + F R ++ ++ KP+I
Sbjct: 86 DHE--GRVITLEYASFYLVCCYSPNSQPKLKRLDF--RMGFEDAFLNYLNDLKEKKPVIM 141
Query: 219 CGDLNVSHEEIDVSHP 234
CGDLNV+HEEID+ +P
Sbjct: 142 CGDLNVAHEEIDLKNP 157
>gi|258512235|ref|YP_003185669.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478961|gb|ACV59280.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 252
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 99/231 (42%), Gaps = 54/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L R N F + + D DV +QE ++ A
Sbjct: 1 MRFVSWNVNGL--RACVNKGAFLPYFESADADVFCIQETKLQAG---------------- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ P + YQ +W+ A+ K Y+GTA+ + P V +
Sbjct: 43 ------------QIELPIGEAYQQFWNYAERKGYSGTAVFTR--ITPLDVRYGFGDGN-- 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+P+GR+I EF +FY++ Y PN K + + R +W+ ++ KP+I C
Sbjct: 87 -DPEGRIITLEFPSFYVVTVYTPNA--KRDLSRLPYRLEWEDAFCAYLCALDREKPVIAC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+HEEID+ + K + G GFT ER + +L
Sbjct: 144 GDLNVAHEEIDIKNA---------------KSNRGNSGFTDEERAKMTELL 179
>gi|335998084|ref|ZP_08563996.1| exodeoxyribonuclease III [Lactobacillus ruminis SPM0211]
gi|335348598|gb|EGM50099.1| exodeoxyribonuclease III [Lactobacillus ruminis SPM0211]
Length = 254
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 42/196 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+ FV+WN N L +K N FS D D +QE ++ + D P HQ
Sbjct: 1 MNFVSWNVNGLRAVLKKN---FSEVFEKLDADFFCIQETKLQEGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K +P+ VS+ ++ +
Sbjct: 53 -------------------------YWNYAERKGYSGTAIFTKH--EPQSVSYGIKNSEF 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+E GRVI E+ +FYL+ Y+PN+ K + F R ++ ++ KP+I
Sbjct: 86 DHE--GRVITLEYASFYLVCCYSPNSQPKLKRLDF--RMGFEDAFLNYLNDLKEKKPVIM 141
Query: 219 CGDLNVSHEEIDVSHP 234
CGDLNV+HEEID+ +P
Sbjct: 142 CGDLNVAHEEIDLKNP 157
>gi|300767631|ref|ZP_07077541.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|300494616|gb|EFK29774.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
Length = 265
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 105/234 (44%), Gaps = 61/234 (26%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNHQELK 98
+K ++WN N L VK+ F+ TF D D +QE ++ A +++
Sbjct: 12 VKLISWNVNGLRAAVKHG------FVMTFNELDADFFCVQETKLQAG----------QIE 55
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT 157
D F Y +W+ A+ K Y+GTA+ K +P V++ +
Sbjct: 56 LD-------------------FPGYYQYWNYAERKGYSGTAIFTKH--EPLNVTYGI--G 92
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPL 216
+++ +GRVI E+ +Y+L Y PN+G E R++W+ ++ S KPL
Sbjct: 93 VPEFDDEGRVITLEYADYYVLTCYTPNSG--GELKRLDYRQQWEDAFLTYINSLSANKPL 150
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
I+CGDLNV+HE ID+ + + + GFT ER +F +L
Sbjct: 151 IFCGDLNVAHENIDLKNW---------------RSNHHSAGFTDEERTKFDRLL 189
>gi|428281769|ref|YP_005563504.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
gi|291486726|dbj|BAI87801.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
Length = 252
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 106/232 (45%), Gaps = 54/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P +V + + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGIGLE--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENVFVITVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+H+EID+ +P K + GF+ ER+ F L+
Sbjct: 144 GDLNVAHQEIDLKNP---------------KANRNNAGFSDQEREAFTRFLE 180
>gi|332797757|ref|YP_004459257.1| exodeoxyribonuclease III Xth [Acidianus hospitalis W1]
gi|332695492|gb|AEE94959.1| exodeoxyribonuclease III Xth [Acidianus hospitalis W1]
Length = 247
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 55/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L + F + I +F+ D++ QE++ P + Q L
Sbjct: 1 MRLISWNVNGLKAIMSKG---FIDIIKSFNADILMFQEIKTDVI-----PLDLQSL---- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y+I+ A K Y+GT + + P VS+ L K +
Sbjct: 49 --------------------GYEIYVFPAKRKGYSGTMTMTR--IHPISVSYGLGKE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCG 220
Y+ +GRVI+ E+ +Y++NTY PN G E + +++ ++FV+ KP I CG
Sbjct: 85 YDSEGRVIILEYPEYYVINTYFPNAG--EGLKRLDFKLSFNRDFEKFVISLK-KPCIICG 141
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
D NV+H+EID++ P K++ GFT ER+ F L
Sbjct: 142 DFNVAHQEIDIARP---------------KDNVNHAGFTPQEREWFSHFL 176
>gi|94543355|gb|ABF33403.1| Exodeoxyribonuclease III [Streptococcus pyogenes MGAS10270]
Length = 303
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 109/254 (42%), Gaps = 50/254 (19%)
Query: 28 TTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVR 81
T T+ K++ +K ++WN +SL + P + + D D+IA+QE +
Sbjct: 15 VTITTRLSVRKRNQMKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETK 74
Query: 82 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGT 137
+ A G K H E LS F NY +W S A YAGT
Sbjct: 75 LSAKGPT---KKHIET----------------LLSY--FPNYLHVWRSSVEPARKGYAGT 113
Query: 138 ALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 197
L K P ++F + +GR+I EFE F++ Y PN G + R
Sbjct: 114 MFLYKNTLNPV-ITFPEIGAPTTMDAEGRIITLEFEDFFVTQVYTPNAG--DGLRRLDDR 170
Query: 198 RKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 256
+ WD + +++ + KP++ GD NV+H+EID+++P N+ P
Sbjct: 171 QIWDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SP 215
Query: 257 GFTIAERKRFGAIL 270
GFT ER+ F +L
Sbjct: 216 GFTDEERQGFTNLL 229
>gi|71902993|ref|YP_279796.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS6180]
gi|71802088|gb|AAX71441.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS6180]
Length = 303
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 109/254 (42%), Gaps = 50/254 (19%)
Query: 28 TTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVR 81
T T+ K++ +K ++WN +SL + P + + D D+IA+QE +
Sbjct: 15 VTITTRLSVRKRNQMKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETK 74
Query: 82 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGT 137
+ A G K H E LS F NY +W S A YAGT
Sbjct: 75 LSAKGPT---KKHIET----------------LLSY--FPNYLHVWRSSVEPARKGYAGT 113
Query: 138 ALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 197
L K P ++F + +GR+I EFE F++ Y PN G + R
Sbjct: 114 MFLYKNTLNPV-ITFPEIGAPTTMDAEGRIITLEFEDFFVTQVYTPNAG--DGLRRLDDR 170
Query: 198 RKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 256
+ WD + +++ + KP++ GD NV+H+EID+++P N+ P
Sbjct: 171 QIWDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SP 215
Query: 257 GFTIAERKRFGAIL 270
GFT ER+ F +L
Sbjct: 216 GFTDEERQGFTNLL 229
>gi|399925203|ref|ZP_10782561.1| exodeoxyribonuclease III [Peptoniphilus rhinitidis 1-13]
Length = 254
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 59/246 (23%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELK 98
+ +K ++WN N L VK F + D D+ ALQE+++ + D P ++
Sbjct: 2 EEIKMISWNVNGLRAVVKKG---FMDEFKKLDADLFALQEIKLQEGQIEIDLPHYYE--- 55
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT 157
F NY A+ K Y+GTA+ KK +P V++ +
Sbjct: 56 ---------------------FYNY------AEKKGYSGTAIFSKK--EPISVNYGI--G 84
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPL 216
+++ +GRVI EFE FY + Y PN+ K E + R+ W+ + ++ + K +
Sbjct: 85 IDEHDKEGRVITLEFENFYFVTCYTPNSKRKLERLDY--RQVWEDDFRNYLNELRKNKEV 142
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI- 275
I CGDLNV+H+EID+++P N++ GFT ER++F +LK I
Sbjct: 143 ILCGDLNVAHKEIDLANP------------STNRK---SAGFTDEEREKFTELLKNGYID 187
Query: 276 -FLCFY 280
F FY
Sbjct: 188 TFRYFY 193
>gi|358065851|ref|ZP_09152385.1| exodeoxyribonuclease [Clostridium hathewayi WAL-18680]
gi|356695714|gb|EHI57339.1| exodeoxyribonuclease [Clostridium hathewayi WAL-18680]
Length = 251
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 55/235 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V + E+ N + D DV +QE ++ A G D P
Sbjct: 3 KLISWNVNGLRACVGKGFLEYFNEV---DADVFCIQESKLQA-GQIDLP----------- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y +W+ A+ K Y+GTA+ K+ +P V++ + ++
Sbjct: 48 -----------------LEGYYQYWNYAEKKGYSGTAMFTKE--EPVSVAYGI--GIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AEF +Y++ Y PN+ K+ R +W+ ++ KP+I+CG
Sbjct: 87 DKEGRVITAEFPEYYVVTCYTPNS--KDGLARLPYRMEWEDAFLAYLKGLEEKKPVIFCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
DLNV+H+EID+ +P K + GF+ ER +F +L I
Sbjct: 145 DLNVAHQEIDLKNP---------------KTNRKNAGFSDEERGKFSDVLAAGFI 184
>gi|383479523|ref|YP_005388417.1| exodeoxyribonuclease III protein ExoA [Streptococcus pyogenes
MGAS15252]
gi|383493446|ref|YP_005411122.1| exodeoxyribonuclease III protein ExoA [Streptococcus pyogenes
MGAS1882]
gi|378927513|gb|AFC65719.1| exodeoxyribonuclease III protein ExoA [Streptococcus pyogenes
MGAS15252]
gi|378929174|gb|AFC67591.1| exodeoxyribonuclease III protein ExoA [Streptococcus pyogenes
MGAS1882]
Length = 303
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 109/253 (43%), Gaps = 50/253 (19%)
Query: 29 TETSSEENSKKDPLKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRM 82
T T+ K++ +K ++WN +SL + P + + D D+IA+QE ++
Sbjct: 16 TITTRLSVRKRNQMKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKL 75
Query: 83 PAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGTA 138
A G K H E LS F NY +W S A YAGT
Sbjct: 76 SAKGPT---KKHIET----------------LLSY--FPNYLHVWRSSVEPARKGYAGTM 114
Query: 139 LLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 198
L K P ++F + +GR+I EFE F++ Y PN G + R+
Sbjct: 115 FLYKNTLNPV-ITFPEIGAPTTMDAEGRIITLEFEDFFVTQVYTPNAG--DGLRRLDDRQ 171
Query: 199 KWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPG 257
WD + +++ + KP++ GD NV+H+EID+++P N+ PG
Sbjct: 172 IWDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SPG 216
Query: 258 FTIAERKRFGAIL 270
FT ER+ F +L
Sbjct: 217 FTDEERQGFTNLL 229
>gi|291561139|emb|CBL39938.1| exodeoxyribonuclease III [butyrate-producing bacterium SS3/4]
Length = 284
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 122/265 (46%), Gaps = 60/265 (22%)
Query: 20 SPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQE 79
+P + G + +E+ S K K ++WN N L + F ++ D D+ +QE
Sbjct: 16 NPEQSGGRKSAIETEKLSMK---KMISWNVNGLRACLGKG---FLEYLKESDADIFCIQE 69
Query: 80 VRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTA 138
++ QE + D L P + Y W+ A+ K Y+GTA
Sbjct: 70 SKL------------QEGQVD--------------LELPGYHQY---WNYAEKKGYSGTA 100
Query: 139 LLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 198
+ K+ +P V++ L +++ +GRVI AEF +Y++ Y PN+ ++ R
Sbjct: 101 MFTKE--EPIAVTYGL--GIEEHDHEGRVITAEFPEYYVVTCYTPNS--QDGLKRLDYRM 154
Query: 199 KWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPG 257
+W+ + ++ + + KP+I+CGDLNV+H+EID+ +P K + G
Sbjct: 155 QWEDAFRAYLKELETKKPVIFCGDLNVAHQEIDLKNP---------------KTNRKNAG 199
Query: 258 FTIAERKRFGAILKEYLI--FLCFY 280
F+ ER +F +L+ + F FY
Sbjct: 200 FSDEERAKFTELLEAGFVDTFRYFY 224
>gi|386748979|ref|YP_006222186.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
gi|384555222|gb|AFI03556.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
Length = 250
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 106/243 (43%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T+ D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFTSVDADIFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ ++ FK Y +W+ A K Y+G K +P VS+ + +
Sbjct: 40 -----------QEQNTFEFKGYFDFWNCALKKGYSGVVTFSKT--KPLNVSYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FYL+N Y PN+ + + R W+ ++F+ KP+I C
Sbjct: 85 HDTEGRVITCEFDKFYLVNVYTPNS--QRALARLEYRMSWEIEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KANRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 HFY 190
>gi|312866373|ref|ZP_07726591.1| exodeoxyribonuclease III [Streptococcus downei F0415]
gi|311098067|gb|EFQ56293.1| exodeoxyribonuclease III [Streptococcus downei F0415]
Length = 276
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 106/240 (44%), Gaps = 49/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSRQVIDSLVEQDADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
L +D F +YQI W A YAGT L K ++
Sbjct: 58 ALLEDY------------------FPDYQIAWRSSVEPARKGYAGTMFLYKNSLPEPTIT 99
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + + R+ WD++ ++++
Sbjct: 100 YPEIDAPSTMDDEGRIITLEFDKFFVTQVYTPNAG--DGLRRLEERQIWDQKYADYLVGL 157
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 158 DQQKPVLASGDYNVAHKEIDLANP------------TSNRR---SPGFTDEERQGFTNLL 202
>gi|71910153|ref|YP_281703.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS5005]
gi|71852935|gb|AAZ50958.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS5005]
Length = 303
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 108/254 (42%), Gaps = 50/254 (19%)
Query: 28 TTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVR 81
T T+ K++ +K ++WN +SL + P + + D D+IA+QE +
Sbjct: 15 VTITTRLSVRKRNQMKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETK 74
Query: 82 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGT 137
+ A G TK E L F NY +W S A YAGT
Sbjct: 75 LSAKGP-------------TKKHIETLL--------SYFPNYLHVWRSSVEPARKGYAGT 113
Query: 138 ALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 197
L K P ++F + +GR+I EFE F++ Y PN G + R
Sbjct: 114 MFLYKNTLNPV-ITFPEIGAPTTMDAEGRIITLEFEDFFVTQVYTPNAG--DGLRRLDDR 170
Query: 198 RKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 256
+ WD + +++ + KP++ GD NV+H+EID+++P N+ P
Sbjct: 171 QIWDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANPN------------SNRR---SP 215
Query: 257 GFTIAERKRFGAIL 270
GFT ER+ F +L
Sbjct: 216 GFTDEERQGFTNLL 229
>gi|226322793|ref|ZP_03798311.1| hypothetical protein COPCOM_00565 [Coprococcus comes ATCC 27758]
gi|225208774|gb|EEG91128.1| exodeoxyribonuclease III [Coprococcus comes ATCC 27758]
Length = 231
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 95/212 (44%), Gaps = 50/212 (23%)
Query: 65 NFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQ 124
+F D D+ LQE +M +E +L+L P + +Q
Sbjct: 2 DFFKEADADIFCLQETKM----------------------QEGQLVL----DLPEY--HQ 33
Query: 125 IWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 184
W S Y+GTA+ KK +P V++ L +++ +GRVI EFE FY + Y PN
Sbjct: 34 YWNSAVKKGYSGTAIFTKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYFITVYTPN 89
Query: 185 NGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 243
+ + E R W+ ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 90 S--QSELARLDYRMTWEDAFLAYLKKLEETKPVIFCGDLNVAHKEIDLKNP--------- 138
Query: 244 GYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
K + GFT ER +F A+L I
Sbjct: 139 ------KTNRKNAGFTDEERAKFSALLDAGFI 164
>gi|403346655|gb|EJY72731.1| Exodeoxyribonuclease III [Oxytricha trifallax]
Length = 644
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 93/195 (47%), Gaps = 35/195 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK WN N L R S FI + DP ++ L E+++ + ++ Q
Sbjct: 372 LKIWAWNINGL--RSITRKRALSQFIESADPLILCLSEIKIDQQALNKSGEDFQ------ 423
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 159
P NY+ +W+ + +K YAGT LL + +P KVSF +
Sbjct: 424 ---------------LPT--NYEQYWNCSITKKGYAGTGLLTR--IKPLKVSFGM--GIE 462
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF---VLQCSGKPL 216
K++ GR+I AE+E F ++N Y PN G++ E+ + RR +WD F + + KP+
Sbjct: 463 KHDEHGRIITAEYEHFVIVNAYFPNGGFQFEKIDY-RRDEWDLDFNSFLDYIRDSTNKPV 521
Query: 217 IWCGDLNVSHEEIDV 231
I GDLN+ ++ D+
Sbjct: 522 ILAGDLNIGRDQYDL 536
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 11/132 (8%)
Query: 122 NYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 179
NY+ +W+ + K AGT LL + +P+KV F + K++ GRV+ AEF+ F L+N
Sbjct: 65 NYEQYWNCSTIKKGIAGTGLLTQ--IKPEKVLFGI--GIEKHDVQGRVLTAEFKHFVLIN 120
Query: 180 TYAPNNGWKEEENSFQRRRKWDKRIQEF---VLQCSGKPLIWCGDLNVSHEEIDV-SHPE 235
TY PN G E + R +WD +++ V KP+I GD N + D+ P+
Sbjct: 121 TYTPNAGMFFERIDY-RVDEWDVDFRDYLDHVRDTYKKPIILTGDFNEAFCAYDIFERPQ 179
Query: 236 FFAAAKLNGYVP 247
L G+ P
Sbjct: 180 KKLKHPLQGFHP 191
>gi|420491640|ref|ZP_14990218.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
gi|393104853|gb|EJC05407.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
Length = 236
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 100/222 (45%), Gaps = 54/222 (24%)
Query: 63 FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122
F +F + D DV +QE +M + ++ FK
Sbjct: 5 FMDFFNSVDADVFCIQESKM-----------------------------QQEQNTFEFKG 35
Query: 123 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 181
Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y
Sbjct: 36 YFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLVNVY 91
Query: 182 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 92 TPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP------ 143
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FLCFY 280
K + GF+ ER++F +L I F FY
Sbjct: 144 ---------KTNRKNAGFSDEEREKFNELLNAGFIDTFRYFY 176
>gi|381180194|ref|ZP_09889037.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
gi|380767904|gb|EIC01900.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
Length = 253
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 103/238 (43%), Gaps = 61/238 (25%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFD---PDVIALQEVRMPAAGSKDAPKNHQELKD 99
KF++WN N L + NF+ FD D LQE ++ A +
Sbjct: 4 KFISWNVNGLRAVMG------KNFMEAFDSLGADFFCLQETKLQAGQIE----------- 46
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+ P +K Y W+ A K Y+GTA+ K +P VS+ +
Sbjct: 47 ---------------MDLPGYKEY---WNYAQKKGYSGTAIFTKH--EPLSVSYGI--GI 84
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLI 217
+++ +GRVI E+ F+L+ Y PN+ + E R W+ + F++ K P+I
Sbjct: 85 EQHDTEGRVITLEYADFFLVTVYTPNS--QNELKRLDYRMAWEDDFRNFLVSLKAKKPVI 142
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
CGD+NV+HEEID+ +P +A + N GFT ER + +L I
Sbjct: 143 VCGDMNVAHEEIDIKNP---SANRRNA------------GFTDEERAKMTELLASGFI 185
>gi|417002268|ref|ZP_11941657.1| exodeoxyribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
gi|325479409|gb|EGC82505.1| exodeoxyribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
Length = 273
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 107/243 (44%), Gaps = 56/243 (23%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL L +N S I D DVIALQE ++P +G K H+
Sbjct: 1 MKFISWNIDSLNAALTSDSNRAVMSREVLETIKREDADVIALQETKLPKSGPS---KKHK 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E KL + F +Y W+ A YAGT L KK + +
Sbjct: 58 E-----------KL-------AEFFPDYDYVWTCSCEGARKSYAGTMTLYKKGLDVTE-T 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
F + +GR++ EF+ FY Y PN G N R R+ WD++ +++
Sbjct: 99 FPKIDAPGTMDFEGRIVTLEFDDFYFTQVYTPNAG-----NGLVRLADRQIWDEKYADYL 153
Query: 209 LQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
KP+I GD NV+H ID++HPE N ++ PGFT ER+ F
Sbjct: 154 EGLDKIKPVIASGDFNVAHTPIDLAHPE-------NNHI--------SPGFTDEEREGFT 198
Query: 268 AIL 270
+L
Sbjct: 199 RLL 201
>gi|404483949|ref|ZP_11019164.1| exodeoxyribonuclease III (xth) [Clostridiales bacterium OBRC5-5]
gi|404342961|gb|EJZ69330.1| exodeoxyribonuclease III (xth) [Clostridiales bacterium OBRC5-5]
Length = 276
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 99/230 (43%), Gaps = 55/230 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F +F D D+ +QE ++ +
Sbjct: 27 KMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIE-------------- 69
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P + +Y W+ A K Y+G A+ K +P V++ + ++
Sbjct: 70 ------------LDLPGYYDY---WNYAQKKGYSGVAVFTKD--KPLNVTYGI--GIEEH 110
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AE+E FYL+ Y PN+ + R W+ ++L+ KP+I+CG
Sbjct: 111 DNEGRVITAEYEDFYLITCYTPNS--QRGLTRLDYRMTWEDAFLSYILKLEEKKPVIFCG 168
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+H+EID+ +P K + GFT ER + IL
Sbjct: 169 DLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKMDVIL 203
>gi|331092367|ref|ZP_08341193.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
gi|330401391|gb|EGG80977.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
Length = 250
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 108/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F +F D D+ +QE +M
Sbjct: 1 MKLISWNVNGIRACVQKG---FLDFFHQADADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L + Y +W+ A+ K Y+GTA+ K+ +P V++ + +
Sbjct: 39 ---QEGQLQL-------ELEGYHQYWNYAEKKGYSGTAVFTKE--EPLSVTYGM--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EF FY Y PN+ + E R +W+ ++ + KP+I+C
Sbjct: 85 HDKEGRLITLEFPEFYFATVYTPNS--QNELARLDYRMQWETDFLAYMKKLEEKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GFT ER +FG +L I F
Sbjct: 143 GDLNVAHREIDLKNP---------------KTNRKNAGFTDEERGKFGELLDAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|304439168|ref|ZP_07399086.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372300|gb|EFM25888.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 254
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 55/231 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KFV+WN N + +K F +PD+I LQE+++ + G D
Sbjct: 5 KFVSWNVNGIRAALKKG---FMESFEELNPDIIGLQEIKL-SEGQLD------------- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P Y ++W+ A+ K Y+GTA+ ++ +P VS+ + ++
Sbjct: 48 ------------LEIP---GYHMYWNYAEKKGYSGTAVFTRE--EPLSVSYGI--GIEEH 88
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI E+ +Y + Y PN+ + R +W++ E++ + KP++ CG
Sbjct: 89 DKEGRVITLEYPEYYFITCYTPNS--QRGLARLDYRMEWEEAFLEYLNRLDEVKPVVLCG 146
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
DLNV+H EID+ +PE N+++ GF+ ER +F +L+
Sbjct: 147 DLNVAHNEIDLKNPE------------SNRKN---AGFSDEERDKFTKLLE 182
>gi|424779917|ref|ZP_18206803.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
gi|422843456|gb|EKU27893.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
Length = 253
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 102/232 (43%), Gaps = 57/232 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK F + D D LQE ++ QE + D
Sbjct: 1 MKFISWNVNGLRAAVKKG---FLDVFNQLDADFFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPK-KVSFSLEKTAL 159
P + Y +W+ A+ K Y+GTA+ K QP V + L L
Sbjct: 46 -----------------PLEGYTQYWNYAEKKGYSGTAIFAK---QPALSVQYGLGIEEL 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+E GR+I E+ FYL+ Y PN + E R +W+ +E++ Q KP+I
Sbjct: 86 DHE--GRLITLEYPEFYLVTCYTPNA--QSELKRIDFRLQWEAAFREYLHQLDEKKPVII 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
CGDLNV+H+ ID+ + PN+ G+ GF+ ER F +L
Sbjct: 142 CGDLNVAHQNIDLKNWR------------PNR---GKAGFSDEERNAFTELL 178
>gi|319935137|ref|ZP_08009577.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
gi|319809962|gb|EFW06345.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
Length = 252
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+ FV+WN N L +K F +F D D+ A+QE ++ +N +L+
Sbjct: 1 MLFVSWNVNGLRACLKKG---FEDFFKDVDADIFAIQETKLQ--------RNQIDLE--- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F+ Y +++ A K Y+G A+ KK +P V + + +
Sbjct: 47 ------------------FEGYTSYYNDAIKKGYSGVAIYTKK--EPMNVIYGM--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR+I EFE FY + Y PN+ K E R+ W+ ++ V + KP++ C
Sbjct: 85 HDQEGRLITLEFEKFYFVAVYTPNS--KRELERLDYRQVWEDAFRQHVQKLKESKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H EID+ + +K + GFT ER +F +L I
Sbjct: 143 GDLNVAHNEIDLKN---------------DKTNHKNAGFTDQERAKFSELLNSGFI 183
>gi|412987602|emb|CCO20437.1| predicted protein [Bathycoccus prasinos]
Length = 411
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 135/294 (45%), Gaps = 41/294 (13%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVK--N 58
MKRF +EKE + + ET + +K P F+T N N LL ++ +
Sbjct: 1 MKRFL-TVEKE----------EEDNTETNAIKKAKIKRKYPSTFLTVNVNGLLSKINSPD 49
Query: 59 NWPEFSNFIT---TFDPDVIALQEVRMPA---AGSKDAPKNHQELKDD--TKASREEKLI 110
W E +T + + DVI++ E +P +G + K Q +D K+ RE
Sbjct: 50 KWKEKQTLLTYLRSANADVISITETWIPGNGSSGGSSSKKYTQPYSNDGTNKSYRESANG 109
Query: 111 LMRALSSPPF-KNYQIWWSLADSKYAGTALLV--KKCFQPKKVS--FSLEKTALKYEPDG 165
+ L S F + Y +++ K AG LV ++ +P +V F+ E + P G
Sbjct: 110 IESLLDSNGFLRKYARYYNCFHQKSAGVLTLVNAEEVEKPNRVRLRFTNEDKGEEEWP-G 168
Query: 166 RVILAEF------ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLI 217
RVI +F +L+TY+PNNG E S +RRR+WD + + + Q G I
Sbjct: 169 RVIECQFGDDEDANRLVVLSTYSPNNGSGAE--SRERRRRWDDSVLKRLTQLRKEGVDFI 226
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
W GDLNV+ + IDV + A P D+G GFT E++RF IL+
Sbjct: 227 WNGDLNVAPDGIDVKFDDIKAMENKKASDP----DYGVAGFTRNEQRRFQNILE 276
>gi|317133644|ref|YP_004092958.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
gi|315471623|gb|ADU28227.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
Length = 256
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 106/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L ++ F++F + D+ +QE +M H E D
Sbjct: 1 MKLISWNVNGLRACMQKG---FADFFNREEADIFCVQETKM-----------HPEQADFA 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F YQ +W+ A+ K Y+GTA+ + P V + + + +
Sbjct: 47 ------------------FDGYQSFWNSAEKKGYSGTAVFTR--VPPLSVRYDMGEP--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
+ +GRVI E E F+L+N Y PN+ + + R +W+ + ++L + KP++ C
Sbjct: 85 HTGEGRVITVESEAFFLVNVYTPNS--QRDLVRLDYRMRWEDAFRAYLLTLNRDKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+H EID+ +P K + GFT ER++ +L+ I
Sbjct: 143 GDMNVAHREIDIKNP---------------KSNIHNAGFTPEERQKMTDLLEAGFI 183
>gi|340751024|ref|ZP_08687853.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
gi|229421274|gb|EEO36321.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
Length = 251
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 40/195 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D+ LQE ++ EL+ D
Sbjct: 1 MKLISWNVNGLRACVGKG---FLDYFKEQQADIFCLQETKLQEG--------QIELELD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A+ K Y+GTA+ K+ +P V + + +
Sbjct: 49 --------------------GYHQYWNYAEKKGYSGTAIFTKE--KPISVHYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE FY++ Y PN+ +E+ R KW++ + ++L+ K P+I C
Sbjct: 85 HDKEGRVITLEFEKFYMITVYTPNS--QEKLARLDYRMKWEEDFKNYLLELDKKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHP 234
GDLNV+H+EID+ +P
Sbjct: 143 GDLNVAHKEIDLKNP 157
>gi|402312986|ref|ZP_10831909.1| exodeoxyribonuclease III [Lachnospiraceae bacterium ICM7]
gi|400367562|gb|EJP20578.1| exodeoxyribonuclease III [Lachnospiraceae bacterium ICM7]
Length = 258
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 99/230 (43%), Gaps = 55/230 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F +F D D+ +QE ++ +
Sbjct: 9 KMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIE-------------- 51
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P + +Y W+ A K Y+G A+ K +P V++ + ++
Sbjct: 52 ------------LDLPGYYDY---WNYAQKKGYSGVAVFTKD--KPLNVTYGI--GIEEH 92
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AE+E FYL+ Y PN+ + R W+ ++L+ KP+I+CG
Sbjct: 93 DNEGRVITAEYEDFYLITCYTPNS--QRGLTRLDYRMTWEDAFLSYILKLEEKKPVIFCG 150
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+H+EID+ +P K + GFT ER + IL
Sbjct: 151 DLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKMDVIL 185
>gi|427413104|ref|ZP_18903296.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
gi|425715920|gb|EKU78906.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
Length = 251
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 103/236 (43%), Gaps = 43/236 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F D D+ LQE ++ HQ
Sbjct: 1 MKLISWNVNGLRAAVTKG---FMESFEKLDADMFCLQETKLQL---------HQ------ 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P ++ Y W S Y+GTA+ + +P V + + ++
Sbjct: 43 -----------IELELPGYEQY--WNSAVKKGYSGTAIFTR--VKPLNVIYGI--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRVI AE++ FYL+ Y PN+ + E + R W+ + ++L+ K P+I CG
Sbjct: 86 DQEGRVITAEYDNFYLVTCYTPNS--QRELARLEYRMTWEDAFRAYLLELDAKKPVILCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTIAERKRFGAILKEY 273
DLNV+H EID+ +P+ K G+ +E + GFT RK + + Y
Sbjct: 144 DLNVAHNEIDLKNPK--TNRKNAGFTDEEREKMTELLNAGFTDTFRKLYPDVTDAY 197
>gi|315613690|ref|ZP_07888597.1| exodeoxyribonuclease III [Streptococcus sanguinis ATCC 49296]
gi|315314381|gb|EFU62426.1| exodeoxyribonuclease III [Streptococcus sanguinis ATCC 49296]
Length = 296
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 107/242 (44%), Gaps = 42/242 (17%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKD 89
N K +K ++WN +SL + ++ E + + D+IA+QE ++ A G
Sbjct: 16 NEKGKFMKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKG--- 72
Query: 90 APKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKK 149
K H E+ ++ E R+ P K Y AGT L KK P
Sbjct: 73 PTKKHLEILEELFPGYENT---WRSSQEPARKGY-----------AGTMFLYKKELTPT- 117
Query: 150 VSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 209
+SF + +GR+I EF+TF++ Y PN G + + R+ WD + E++
Sbjct: 118 ISFPEIGAPSTMDLEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLA 175
Query: 210 QCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
Q KP++ GD NV+H+EID+++P N+ PGFT ER F
Sbjct: 176 QLDKEKPVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEERAGFTN 220
Query: 269 IL 270
+L
Sbjct: 221 LL 222
>gi|145529087|ref|XP_001450332.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417943|emb|CAK82935.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 23/155 (14%)
Query: 121 KNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 178
K+Y ++ + SK Y+G A+ K K +S + K++ +GR + AEFE FYL+
Sbjct: 141 KHYFLYLNFCKSKAGYSGVAIASK----VKPLSVKCDIGVDKHDQEGRTLTAEFEQFYLV 196
Query: 179 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 237
+ Y PN+G K E + R ++WD Q ++ KP I CGDLNV+H EID+S+P
Sbjct: 197 SCYVPNSGQKLERLDY-RTKEWDIDFQNYLEGLRKKKPTILCGDLNVAHHEIDLSNP--- 252
Query: 238 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
NK+ GFT+ ER +F L++
Sbjct: 253 ---------AGNKK---TAGFTLQERDQFSNYLQK 275
>gi|374710435|ref|ZP_09714869.1| apurinic/apyrimidinic endonuclease [Sporolactobacillus inulinus
CASD]
Length = 253
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 104/230 (45%), Gaps = 52/230 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N R + +++ D + +QE ++ HQ+
Sbjct: 1 MKFISWNVNGF--RALQRKMDVFSWLKETGADALCIQETKL-----------HQD----- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ +P + +Q W Y+GTA+ K +P +V++ + +
Sbjct: 43 ----------QVQIDTPGY--HQFWNDAVRKGYSGTAIFTKN--KPLRVTYGMGIEV--H 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GR+I E+E +YL+ Y PN K + R +W +++ + KP+I+CG
Sbjct: 87 DQEGRLITLEYEDYYLVTVYTPNA--KRDLTRLAYRLEWGAAFTDYMKRLDEKKPVIFCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+H+ ID+++P K + G GFTI ER+ F A+L
Sbjct: 145 DLNVAHQAIDLTYP---------------KNNKGNSGFTIEEREDFTALL 179
>gi|306824688|ref|ZP_07458032.1| exodeoxyribonuclease III [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304432899|gb|EFM35871.1| exodeoxyribonuclease III [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 275
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ E + + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQILVAENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ ++ F Y+ W A YAGT L KK P +S
Sbjct: 58 EILEEL------------------FPGYENTWRSSQEPARKGYAGTMFLYKKELTPT-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+TF++ Y PN G + + R+ WD + E++ Q
Sbjct: 99 FPEIGAPSTMDLEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLAQL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER F +L
Sbjct: 157 DKEKPVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEERAGFTNLL 201
>gi|225569150|ref|ZP_03778175.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM
15053]
gi|225161949|gb|EEG74568.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM
15053]
Length = 250
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 105/230 (45%), Gaps = 55/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F +F D D+ +QE +M
Sbjct: 1 MKCISWNVNGIRACVQKG---FMDFFQEADADIFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L +P + Y W+ A+ K Y+GTA+ KK + +SF+ +
Sbjct: 39 ---QEGQL----ELETPGYFQY---WNYAERKGYSGTAVFTKK----EPLSFTCGIGIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY + Y PN+ + E R +W+ ++ + KP+I+C
Sbjct: 85 HDKEGRVITLEFEEFYFVTVYTPNS--QSELARLSYRMEWEDAFLAYLKKLEEKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
GDLNV+ EEID+ +P K + GFT ER++F I
Sbjct: 143 GDLNVAAEEIDLKNP---------------KTNRKNAGFTDEEREKFRKI 177
>gi|158298437|ref|XP_318609.4| AGAP009587-PA [Anopheles gambiae str. PEST]
gi|157013880|gb|EAA14571.4| AGAP009587-PA [Anopheles gambiae str. PEST]
Length = 606
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 38/211 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
K +WN L V EF I PD++ +QE + ++ D+
Sbjct: 354 FKISSWNVAGLRSWVGKGGLEF---IEHEKPDILCVQETKC----------TEDQMPDEA 400
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ K Y +W +AG A+ KK P V++ L +
Sbjct: 401 RH----------------IKGYHPYWLCKPGGHAGVAIYSKKM--PFHVAYGLGDE--EQ 440
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ DGR++ AE+E FYL+ Y PN G K + +R +W+++ +++ K P+I CG
Sbjct: 441 DQDGRLLTAEYEKFYLVCVYVPNAGRKL--VTLPKRLRWNEKFHQYLRDLDAKKPVILCG 498
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKE 251
D+NV+HEEID+++P+ K G+ P +E
Sbjct: 499 DMNVAHEEIDLANPK--TNKKNAGFTPEERE 527
>gi|355574795|ref|ZP_09044431.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
gi|354818271|gb|EHF02763.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
Length = 261
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 107/239 (44%), Gaps = 57/239 (23%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQ 95
S++ L+ V+WN N L +K + P F D DV A+QE ++ D P HQ
Sbjct: 4 SEERELRLVSWNVNGLRAVMKKD-PSFPQIFEAADADVFAIQETKLQEGQLDLDLPGYHQ 62
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
W+ A+ K Y+GTA+ ++ +P +V +
Sbjct: 63 T------------------------------WNYAERKGYSGTAVFSRE--EPLRV---I 87
Query: 155 EKTALKYEPD-GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG 213
+ ++ D GRV EFE ++ ++ Y PN+ K R WD+ +EF+ +
Sbjct: 88 RQIGCEFADDEGRVCALEFERYWFVDVYTPNS--KNGLLRLDERMVWDRSYREFLSGLAK 145
Query: 214 -KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP++ CGD NV+HEEID+ +P+ +N GF+ ER+ FG +L+
Sbjct: 146 EKPVVTCGDFNVAHEEIDLKNPD---TNHMNA------------GFSDEEREGFGKLLE 189
>gi|343524816|ref|ZP_08761774.1| exodeoxyribonuclease III [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|343398465|gb|EGV10998.1| exodeoxyribonuclease III [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
Length = 275
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 104/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFITTF----DPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLQAEKADIIAIQETKLSANGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D+ F +Y+ W A YAGT L K+ PK ++
Sbjct: 58 KVLDEL------------------FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EFE F++ Y PN G + + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDAEGRIITLEFEKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTAL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DIEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFANLL 201
>gi|50913711|ref|YP_059683.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS10394]
gi|50902785|gb|AAT86500.1| Exodeoxyribonuclease III [Streptococcus pyogenes MGAS10394]
Length = 303
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 109/254 (42%), Gaps = 50/254 (19%)
Query: 28 TTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVR 81
T T+ K+ +K ++WN +SL + P + + D D+IA+QE +
Sbjct: 15 VTITTRLSVRKRCQMKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETK 74
Query: 82 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGT 137
+ A G K H E AL S F NY +W S A YAGT
Sbjct: 75 LSAKGPT---KKHIE-----------------ALLSY-FPNYLHVWRSSVEPARKGYAGT 113
Query: 138 ALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 197
L K P ++F + +GR+I EFE F++ Y PN G + R
Sbjct: 114 MFLYKNTLNPV-ITFPEIDAPTTMDAEGRIITLEFEDFFVTQVYTPNAG--DGLRRLDDR 170
Query: 198 RKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 256
+ WD + +++ + KP++ GD NV+H+EID+++P N+ P
Sbjct: 171 QIWDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SP 215
Query: 257 GFTIAERKRFGAIL 270
GFT ER+ F +L
Sbjct: 216 GFTDEERQGFTNLL 229
>gi|258648040|ref|ZP_05735509.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
gi|260851895|gb|EEX71764.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
Length = 250
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 103/236 (43%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L R + F + D D LQE +M QE + D
Sbjct: 1 MKFISWNVNGL--RAVDG-KGFRDIFRAIDADFFCLQETKM------------QEGQLDI 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y+ +W+ A+ K Y+GTA+ K K +S + +
Sbjct: 46 -----------------AFDGYESYWNYAEKKGYSGTAIFTKH----KPLSVQIGLGIDE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E + FYL+ Y PN+ ++E R W++ Q + + KP+I C
Sbjct: 85 HDHEGRVITLELDDFYLVCVYTPNS--QDELRRLDYRMIWEEAFQAHLHKLDAHKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+H+EID+ +P K + GFT ER++ +L I
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTQLLSNGFI 183
>gi|401564907|ref|ZP_10805765.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
gi|400188269|gb|EJO22440.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
Length = 250
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 99/230 (43%), Gaps = 53/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + +P VS+ + ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--LKPLSVSYGIGIE--EH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI EFE YL+ Y PN+ K R W+ + F+L KP++ CG
Sbjct: 86 DNEGRVITMEFEDVYLVTVYTPNS--KNGLLRLDYRMVWEDAFRAFLLDLRAKKPVVVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+H EID+ +P K + GFT ER +F +L
Sbjct: 144 DLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELL 178
>gi|251779069|ref|ZP_04821989.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243083384|gb|EES49274.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 251
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 55/235 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L VK F + + + D+ +QE ++ QE + D
Sbjct: 3 KLISWNVNGLRACVKKG---FLDILKESNADIFCVQESKL------------QEGQIDLN 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
Y +W+ A+ K Y+GTA+ K+ K ++ SL ++
Sbjct: 48 -----------------LDGYYDYWNYAEKKGYSGTAVFSKE----KPLNISLGIGIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRV+ EFE FYL+N Y PN+ +++ R W+ + ++ + + K +I CG
Sbjct: 87 DKEGRVLTLEFEEFYLVNVYTPNS--QQKLARIDYRMAWENDFRHYLNELNKDKSVIVCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
DLNV+H+EID+ +P K + GF+ ER++FG +LK I
Sbjct: 145 DLNVAHKEIDLKNP---------------KNNRNNAGFSDEEREKFGELLKSGFI 184
>gi|403335404|gb|EJY66875.1| Exonuclease III [Oxytricha trifallax]
gi|403370677|gb|EJY85206.1| Exonuclease III [Oxytricha trifallax]
Length = 583
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 35/202 (17%)
Query: 35 ENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
E+ K D L WN N L + N F+ DPD++ E++ K A
Sbjct: 68 EDFKSDQLNIWVWNINGLQAVI--NKGMLDVFLQGEDPDIVCFNEIKTDPEKIKSA---- 121
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSF 152
+ + K+Y+ +W+ + SK Y+GT L+ K +P KV+F
Sbjct: 122 -------------------SFHTKIPKDYEQYWNCSKSKKGYSGTGLITK--IKPIKVTF 160
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 211
+ +++ +GRVI AEF F L+ Y PN+G S+ R ++WDK +++ +
Sbjct: 161 DI--GIEEHDQEGRVITAEFSKFVLVAVYVPNSGDDLRRLSY-RTQEWDKAFFDYLDRTR 217
Query: 212 --SGKPLIWCGDLNVSHEEIDV 231
+ KPLI GDLNV+ E+DV
Sbjct: 218 IETNKPLILTGDLNVARNELDV 239
>gi|330719278|ref|ZP_08313878.1| exonuclease III [Leuconostoc fallax KCTC 3537]
Length = 271
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 109/238 (45%), Gaps = 49/238 (20%)
Query: 42 LKFVTWNANSLLLRV--KNNWPEFS----NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +S+ V K+N E + N I+ PDV+++QE ++ A+G
Sbjct: 1 MKFISWNIDSINAAVEHKSNRGEMTWAVLNEISEIAPDVLSIQETKLKASGLT------- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWW--SLADSKYAGTALLVKKCFQPKKVSFS 153
+++L + +L F +Y I+ S S Y+GT +L K P +
Sbjct: 54 ----------KKQLATLNSL----FPDYHIFVNPSTGRSGYSGTMMLSKVA--PLNIDMP 97
Query: 154 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG 213
+ + +GR+I EF FY+ Y PN+G + R WD + ++
Sbjct: 98 KIDAPGEMDLEGRIITLEFPEFYVSTVYTPNSG--SQLARLNDRGAWDDAYRHYIQSLDQ 155
Query: 214 -KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I+ GD NV+H+EID+ +P K + GFT ER++F +L
Sbjct: 156 QKPVIFSGDFNVAHQEIDLKNP---------------KSNRHSAGFTPEEREKFTNLL 198
>gi|290562880|gb|ADD38834.1| DNA-apurinic or apyrimidinic site lyase [Lepeophtheirus salmonis]
Length = 317
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 112/255 (43%), Gaps = 40/255 (15%)
Query: 14 AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPD 73
KK SPS + + T+T ++ K LK +WN + +K S + T PD
Sbjct: 35 VKKETESPSDERPDCTQT--QKGKKSCNLKITSWNVAGVRAWIKKG--SLSYLLETEKPD 90
Query: 74 VIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK 133
+ LQE + P +ELKD +Q W
Sbjct: 91 IFCLQETK---CSETKIPCELKELKD---------------------YPHQFWAFAKKEG 126
Query: 134 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 193
Y+G AL K +P V L+ + ++ +GR+I+AEFE F+LL TY PN G K +
Sbjct: 127 YSGVALFSK--VKPLDVQVGLQ--SQDHDEEGRIIIAEFEFFFLLTTYVPNAGRKLV--T 180
Query: 194 FQRRRKWDKRIQ-EFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNK-- 250
+R WD ++ + KP+I GDLNV+H EID+++P+ K G+ P +
Sbjct: 181 LDKRLDWDLLLRKKMKELNKKKPVIASGDLNVAHTEIDLANPK--TNQKNAGFTPEERAG 238
Query: 251 -EDWGQPGFTIAERK 264
+D GF RK
Sbjct: 239 FDDLLSLGFVDTYRK 253
>gi|430751698|ref|YP_007214606.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
gi|430735663|gb|AGA59608.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
Length = 258
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D D++ +QE ++
Sbjct: 1 MKLISWNVNGLRSCVGKG---FLDYFRRADADIVCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L P + Y+ +W+ A+ K Y+GTA+ + F+P V L
Sbjct: 39 ---QEGQL----ELELP--EGYRQYWNCAEKKGYSGTAVFTR--FEPLSVRKGLSDGD-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+P+GRV+ EF F+L+N Y PN + + + + R W++R + ++ + KP++ C
Sbjct: 86 -DPEGRVLTLEFPAFFLVNVYTPNA--RRDLSRLEYRIAWEERFRAYLKELDARKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+H EID+ + +F + G GFT ER+ +L+
Sbjct: 143 GDLNVAHREIDLKNAKF---------------NRGNAGFTDEEREAMTRLLE 179
>gi|385827641|ref|YP_005865413.1| exodeoxyribonuclease III [Lactobacillus rhamnosus GG]
gi|259649286|dbj|BAI41448.1| exodeoxyribonuclease III [Lactobacillus rhamnosus GG]
Length = 253
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 104/243 (42%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN N L +K +F D D LQE +M A +
Sbjct: 2 LKMISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVE------------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y ++ A+ K Y+GTA+ K +P V++ + +
Sbjct: 46 -------------LDLPGYYQY---FNYAERKGYSGTAIFTKH--KPLNVTYGM--GIPE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GR+I E+ FYL+ Y PN+G E R++WD+ + + + K PL++C
Sbjct: 86 HDTEGRIITLEYTKFYLMTVYTPNSG--GELKRLDYRQQWDRDFLAYTNELAAKKPLVYC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HE ID+ + +K + GFT ER F L I F
Sbjct: 144 GDLNVAHEPIDLKN---------------DKTNHHNAGFTDEERADFTKQLNSGFIDTFR 188
Query: 278 CFY 280
FY
Sbjct: 189 HFY 191
>gi|440302801|gb|ELP95108.1| exodeoxyribonuclease III, putative [Entamoeba invadens IP1]
Length = 373
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 86/165 (52%), Gaps = 24/165 (14%)
Query: 118 PPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 175
P Y ++S + +K YAGTA+L K+ +P V+ L+ K GR+I AE+E F
Sbjct: 167 PTVSGYNSYFSASTAKKGYAGTAILTKE--KPITVTMKLDG---KLNEHGRIITAEYEKF 221
Query: 176 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 234
YL+NTY N+G K EN +R WD +++ ++ S K +IWCGDLNV+ IDV+ P
Sbjct: 222 YLVNTYVMNSGVK-LENLKKRVDTWDVSMKKHLIDLSKKKKVIWCGDLNVALRWIDVAKP 280
Query: 235 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCF 279
A +L GFT ER+ +L+E + F
Sbjct: 281 ----ATRLRC-----------AGFTKEERESASQLLEEVGLVDSF 310
>gi|339451827|ref|ZP_08655197.1| exodeoxyribonuclease III [Leuconostoc lactis KCTC 3528]
Length = 272
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 109/239 (45%), Gaps = 51/239 (21%)
Query: 42 LKFVTWNANSLLLRVKN-------NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
+ F++WN +S+ +++ W I P+V A+QE ++ A G
Sbjct: 1 MHFISWNIDSINAAIEHKSARGEMTWDVLQK-IAAQQPNVFAIQETKLKATG-------- 51
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSF 152
++++ +L + F +YQI+ + +D++ Y+GT +L + P V++
Sbjct: 52 --------LTKKQATVL-----AELFPDYQIYVNASDARSGYSGTMILTR--LTPLAVTY 96
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
+ + +GR+I EFE F++ Y PN+G R WD + ++
Sbjct: 97 PTIGAPGEMDLEGRIITLEFEDFFVSTVYTPNSG--SALARLADRGAWDDTYRAYISSLD 154
Query: 213 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I+ GD+NV+H+EID+ +P K + GFT ER++F +L
Sbjct: 155 AQKPVIFSGDMNVAHQEIDLKNP---------------KTNHKSAGFTDQEREKFTELL 198
>gi|270010058|gb|EFA06506.1| hypothetical protein TcasGA2_TC009405 [Tribolium castaneum]
Length = 983
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 23/153 (15%)
Query: 120 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 178
+ Y+ W +D YAG ++VK +P V + ++ + +++ +GR I E+ETF+++
Sbjct: 817 IEGYETLWCCSDKDGYAGVGIMVKD--KPLNVIYGID--SKEHDTEGRCITVEYETFFVV 872
Query: 179 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 237
N Y P+ G + +R W+++ ++F+ S KP+I CGD+NV+H+EID+++P
Sbjct: 873 NVYVPHAGRNLV--TLPKRLDWNEQFEKFIKNLDSQKPVIICGDMNVAHKEIDLANP--- 927
Query: 238 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
K + GF++ ER A L
Sbjct: 928 ------------KTNTNSAGFSVEERDGMTAFL 948
>gi|219884049|gb|ACL52399.1| unknown [Zea mays]
Length = 493
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 47/230 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN N L +K+ D DV+ LQE +M K+ + +KD
Sbjct: 233 LKIMSWNVNGLKALLKSRGFSVQQLAQREDFDVLCLQETKM-------QEKDIEVIKD-- 283
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 159
L+ ++ +W+ + SK Y+GTA++ + +P + + L +
Sbjct: 284 --------TLLDGYTNS-------FWTCSVSKLGYSGTAIISR--VKPLSIKYGLGIS-- 324
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
++ +GRV+ EF+ FYLL Y PN+G + ++ R +WD + ++ + KP+I
Sbjct: 325 DHDTEGRVVTVEFDDFYLLTAYVPNSGDGLKRLTY-RVTEWDPSLGNYMKELEKSKPVIL 383
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
GDLN +H+EID+ P D GFT ER+ FG
Sbjct: 384 TGDLNCAHQEIDIHDPAG---------------DRRSAGFTNEERESFGT 418
>gi|379705791|ref|YP_005204250.1| exodeoxyribonuclease [Streptococcus infantarius subsp. infantarius
CJ18]
gi|374682490|gb|AEZ62779.1| exodeoxyribonuclease [Streptococcus infantarius subsp. infantarius
CJ18]
Length = 275
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 35/204 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +S+ + ++ N + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSINAALTSDSARAVLSRAVINTLVAEDADIIAIQETKLSANGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ +D F +Y I W A YAGT L KK P+ +S
Sbjct: 58 QILNDY------------------FPDYDISWRSSVEPARKGYAGTMFLYKKGLTPE-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+ FY+ Y PN G + R+ WD++ +++ +
Sbjct: 99 FPEIGAPDTMDSEGRIITLEFDNFYVTQVYTPNAG--DGLKRLAERQLWDEKYAQYLAEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHP 234
KP++ GD NV+H+EID+++P
Sbjct: 157 DQKKPVLATGDYNVAHQEIDLANP 180
>gi|268608445|ref|ZP_06142172.1| exodeoxyribonuclease [Ruminococcus flavefaciens FD-1]
Length = 248
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 54/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + F +F D D+ +QE +M + +P+ +
Sbjct: 1 MKLISWNVNGFRACLTKG---FGDFFAEADADIFCIQETKMQPDQADFSPEGY------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
++ + S Y+GTA+ KK +P V+F + ++
Sbjct: 51 ---------------------HKYFHSAIKKGYSGTAVYTKK--EPLSVTFGING---EH 84
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+GRVI E+E FY + Y PN + E R +++ ++ ++ + K P+I+CG
Sbjct: 85 TDEGRVITCEYEDFYFVGCYVPNA--QNELKRIDYRMEFEDAMRGYLSELDKKKPVIYCG 142
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+H EID+ +P K + G GF+ ER +F +L
Sbjct: 143 DLNVAHNEIDLKNP---------------KSNVGNAGFSDEERGKFTELL 177
>gi|48477699|ref|YP_023405.1| exodeoxyribonuclease III [Picrophilus torridus DSM 9790]
gi|48430347|gb|AAT43212.1| exodeoxyribonuclease III [Picrophilus torridus DSM 9790]
Length = 250
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 53/224 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VKN NFI +PD++ LQE++ +G D P+ +
Sbjct: 1 MKILSWNVNGIRAAVKNG---ILNFINEENPDIVLLQEIK---SGKNDLPEELHHM---- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y+I+ + A+ K Y+GT L K +P + +S
Sbjct: 51 --------------------GYKIFINPAEKKGYSGTMALSK--VEP--LDYSSGIGIKD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
Y+ +GRV + +++ FY++NTY PN+ + + +D + EF + KPLI
Sbjct: 87 YDSEGRVQILKYDNFYIINTYFPNS--QHGLTRLDYKIDFDNKFLEFCEKLRKEKPLIIT 144
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 263
GD NV+HEEID++ P K++ GFTI ER
Sbjct: 145 GDFNVAHEEIDIARP---------------KDNENNAGFTIQER 173
>gi|55821526|ref|YP_139968.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMG 18311]
gi|55737511|gb|AAV61153.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMG 18311]
Length = 275
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 110/245 (44%), Gaps = 50/245 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + + T + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGDSARAQLSRAVIDTLVTENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ +D F +Y I W A YAGT L KK P ++
Sbjct: 58 QILEDY------------------FPDYVITWRSSVEPARKGYAGTMFLYKKELTPV-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+TF++ Y PN G + R+ WDK+ +++ +
Sbjct: 99 YPEIGAPSTMDCEGRIITLEFDTFFVTQVYTPNAG--DGLKRLLERQIWDKKYADYLAEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER F +L
Sbjct: 157 DAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SPGFTDEERAGFTNLL 201
Query: 271 KEYLI 275
+ I
Sbjct: 202 NKGFI 206
>gi|199597303|ref|ZP_03210734.1| Exonuclease III [Lactobacillus rhamnosus HN001]
gi|199591819|gb|EDY99894.1| Exonuclease III [Lactobacillus rhamnosus HN001]
Length = 253
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 104/243 (42%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN N L +K +F D D LQE +M A +
Sbjct: 2 LKMISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVE------------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y ++ A+ K Y+GTA+ K +P V++ + +
Sbjct: 46 -------------LDLPGYYQY---FNYAERKGYSGTAIFTKH--KPLNVTYGM--GIPE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GR+I E+ FYL+ Y PN+G E R++WD+ + + + K PL++C
Sbjct: 86 HDTEGRIITLEYTKFYLMTVYTPNSG--GELKRLDYRQQWDRDFLAYTNELAAKKPLVYC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HE ID+ + +K + GFT ER F L I F
Sbjct: 144 GDLNVAHEPIDLKN---------------DKTNHHNAGFTDEERADFTKQLNSGFIDTFR 188
Query: 278 CFY 280
FY
Sbjct: 189 HFY 191
>gi|104773315|ref|YP_618295.1| exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116513293|ref|YP_812199.1| exonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|385814875|ref|YP_005851266.1| Exodeoxyribonuclease A [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|103422396|emb|CAI96933.1| Exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116092608|gb|ABJ57761.1| Exonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|325124912|gb|ADY84242.1| Exodeoxyribonuclease A [Lactobacillus delbrueckii subsp. bulgaricus
2038]
Length = 275
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 102/246 (41%), Gaps = 62/246 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWP--EFSNFIT----TFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + P E + + DPDV+ALQE ++PA+G K HQ
Sbjct: 1 MRLISWNIDSLNAALTGTSPRAEMTRGVLKNLHDLDPDVLALQETKLPASGPS---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
D F Y W A YAGT L KK +P
Sbjct: 58 AALADL------------------FPEYDFVWRSSMEPARKGYAGTMFLYKKGLEPVVTR 99
Query: 152 FSLEKTALKYEP---DGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQ 205
+ EP +GR++ EF FY+ Y PN G N R R++WDK +
Sbjct: 100 PEIGAP----EPMDFEGRILTLEFPDFYVTQVYTPNAG-----NGLVRLGDRQEWDKCYR 150
Query: 206 EFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERK 264
++ + K P++ GD N +++EID+ HPE + GFT ER
Sbjct: 151 AYLEELDKKKPVLASGDFNAAYQEIDLKHPE---------------NNHHSAGFTDEERA 195
Query: 265 RFGAIL 270
FG +L
Sbjct: 196 GFGQLL 201
>gi|28896473|ref|NP_802823.1| 3'-exo-deoxyribonuclease [Streptococcus pyogenes SSI-1]
gi|28811724|dbj|BAC64656.1| putative 3'-exo-deoxyribonuclease [Streptococcus pyogenes SSI-1]
Length = 313
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 109/254 (42%), Gaps = 50/254 (19%)
Query: 28 TTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVR 81
T T+ K+ +K ++WN +SL + P + + D D+IA+QE +
Sbjct: 25 VTITTRLSVRKRYQMKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETK 84
Query: 82 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGT 137
+ A G K H E AL S F NY +W S A YAGT
Sbjct: 85 LSAKGPT---KKHIE-----------------ALLSY-FPNYLHVWRSSVEPARKGYAGT 123
Query: 138 ALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 197
L K P ++F + +GR+I EFE F++ Y PN G + R
Sbjct: 124 MFLYKNTLNPV-ITFPEIGAPTTMDAEGRIITLEFEDFFVTQVYTPNAG--DGLRRLDDR 180
Query: 198 RKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 256
+ WD + +++ + KP++ GD NV+H+EID+++P N+ P
Sbjct: 181 QIWDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SP 225
Query: 257 GFTIAERKRFGAIL 270
GFT ER+ F +L
Sbjct: 226 GFTDEERQGFTNLL 239
>gi|386747928|ref|YP_006221136.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
gi|384554170|gb|AFI05926.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
Length = 250
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T+ + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFTSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G K +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFDFKGYFDFWNCAIKKGYSGVVTFSKT--EPLNVSYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EF+ FYL+N Y PN+ + + R W+ ++F+ KP+I C
Sbjct: 85 HDTEGRVVTCEFDKFYLVNVYTPNS--QRALARLEYRMSWEVEFRKFLKNLELQKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H EID+ +P K + GF+ ER++F +L I F
Sbjct: 143 GDLNVAHNEIDLENP---------------KANRKNAGFSDEEREKFSELLNAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 HFY 190
>gi|419718967|ref|ZP_14246261.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum F0468]
gi|383304836|gb|EIC96227.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum F0468]
Length = 252
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 100/230 (43%), Gaps = 55/230 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F +F D D+ +QE ++ +
Sbjct: 3 KMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIE-------------- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P + +Y W+ A K Y+G A+ K +P V++ + ++
Sbjct: 46 ------------LDLPGYYDY---WNYATKKGYSGVAVFTKD--KPINVTYGIGID--EH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AE++ FYL+ Y PN+ + R W+ ++VL+ KP+I+CG
Sbjct: 87 DNEGRVITAEYDEFYLITCYTPNS--QRGLTRLDYRMTWEDAFLDYVLKLEEKKPVIFCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+H+EID+ +P K + GFT ER + IL
Sbjct: 145 DLNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKMDIIL 179
>gi|342218104|ref|ZP_08710730.1| exodeoxyribonuclease III [Megasphaera sp. UPII 135-E]
gi|341590909|gb|EGS34130.1| exodeoxyribonuclease III [Megasphaera sp. UPII 135-E]
Length = 249
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 40/196 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K+++WN N L +K F + T D D LQE ++ A G D
Sbjct: 1 MKYISWNVNGLRAIMKKG---FIDIFQTLDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L+ P + Y W+ AD K Y+GTA+ K +P +V++ + A
Sbjct: 45 -------------LTLPGYHQY---WNYADRKGYSGTAIFTKH--EPLQVTYGMGIDAHD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
+E GR+I E+ Y++ Y PN+ + E R +W+ + ++ Q K +I+C
Sbjct: 87 HE--GRLITLEYPDRYVVTCYTPNS--QNELARLPYRMQWEDDCRHYLSQLKEQKSVIFC 142
Query: 220 GDLNVSHEEIDVSHPE 235
GDLNV+HEEID+ +P+
Sbjct: 143 GDLNVAHEEIDLKNPK 158
>gi|322392394|ref|ZP_08065855.1| exodeoxyribonuclease [Streptococcus peroris ATCC 700780]
gi|321144929|gb|EFX40329.1| exodeoxyribonuclease [Streptococcus peroris ATCC 700780]
Length = 275
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQDVLQTLVAEDADIIAIQETKLSATGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ ++ F Y+ W A YAGT L KK P +S
Sbjct: 58 EVLEEL------------------FPGYENTWRSSQEPARKGYAGTMFLYKKELTPT-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+TF++ Y PN G + + R+ WD + E++ +
Sbjct: 99 FPEIGAPSTMDSEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDIKYAEYLAEL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P + PGFT ER+ F +L
Sbjct: 157 DKKKPVLATGDYNVAHKEIDLANP---------------ASNHRSPGFTDEEREGFTNLL 201
>gi|228909564|ref|ZP_04073387.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
gi|228849853|gb|EEM94684.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
Length = 244
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 23/158 (14%)
Query: 120 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 178
+ Y +W+ A K Y+GTA+ KK +P V++ L +++ +GR+I EFE FY++
Sbjct: 40 LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRLITLEFEDFYMI 95
Query: 179 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 237
Y PN+ K R KW+ + ++ + K +I+CGDLNV+H+EID+ +P
Sbjct: 96 TLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKTVIFCGDLNVAHKEIDLKNP--- 150
Query: 238 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
K + PGF+ ER++F IL+E +
Sbjct: 151 ------------KSNRKNPGFSDEEREKFTCILEEGFV 176
>gi|403336088|gb|EJY67231.1| Exonuclease III [Oxytricha trifallax]
Length = 640
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 35/202 (17%)
Query: 35 ENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
E+ K D L WN N L + N F+ DPD++ E++ K A
Sbjct: 68 EDFKSDQLNIWVWNINGLQAVI--NKGMLDVFLQGEDPDIVCFNEIKTDPEKIKSA---- 121
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSF 152
+ + K+Y+ +W+ + SK Y+GT L+ K +P KV+F
Sbjct: 122 -------------------SFHTKIPKDYEQYWNCSKSKKGYSGTGLITK--IKPIKVTF 160
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 211
+ +++ +GRVI AEF F L+ Y PN+G S+ R ++WDK +++ +
Sbjct: 161 DI--GIEEHDQEGRVITAEFSKFVLVAVYVPNSGDDLRRLSY-RTQEWDKAFFDYLDRTR 217
Query: 212 --SGKPLIWCGDLNVSHEEIDV 231
+ KPLI GDLNV+ E+DV
Sbjct: 218 IETNKPLILTGDLNVARNELDV 239
>gi|238855799|ref|ZP_04646091.1| exodeoxyribonuclease III [Lactobacillus jensenii 269-3]
gi|260665239|ref|ZP_05866088.1| exodeoxyribonuclease III [Lactobacillus jensenii SJ-7A-US]
gi|238831575|gb|EEQ23920.1| exodeoxyribonuclease III [Lactobacillus jensenii 269-3]
gi|260560976|gb|EEX26951.1| exodeoxyribonuclease III [Lactobacillus jensenii SJ-7A-US]
Length = 275
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 40/246 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ ++WN +SL + ++ I +PD++A+QE ++ A G K H
Sbjct: 1 MLLISWNIDSLNAALTSDSARAQKTRHVLTQIAEKEPDILAIQETKLRATGPT---KKHA 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADS----KYAGTALLVKKCFQPKKVS 151
E+ + F +Y W ++ YAGT L KK +P+ VS
Sbjct: 58 EILQEM------------------FPDYDYVWRSSEEPARKGYAGTMYLYKKSLKPE-VS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF +++ Y PN G E R+ WDK+ E++ +
Sbjct: 99 YPKIGAPDTMDFEGRIITLEFPEYFVTQVYTPNAG--GELKRLSDRQGWDKKYIEYLQEL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTIAERKRFG 267
KP++ GD NV+HEEID+ HPE + G+ + D+ + GFT + RK G
Sbjct: 157 DVQKPVLASGDYNVAHEEIDLKHPENNHHSA--GFTDEERADFTELLAAGFTDSFRKIHG 214
Query: 268 AILKEY 273
I + Y
Sbjct: 215 NIPEVY 220
>gi|386345233|ref|YP_006041397.1| 3-exo-deoxyribonuclease [Streptococcus thermophilus JIM 8232]
gi|339278694|emb|CCC20442.1| 3-exo-deoxyribonuclease [Streptococcus thermophilus JIM 8232]
Length = 275
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 50/242 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + + T + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGDSTRAQLSRAVIDTLVTENADIIAIQETKLSAKG---PTKKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ +D F +Y I W A YAGT L KK P ++
Sbjct: 58 QILEDY------------------FPDYVITWRSSVEPARKGYAGTMFLYKKELTPV-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+TF++ Y PN G + R+ WDK+ +++ +
Sbjct: 99 YPEIGAPSTMDCEGRIITLEFDTFFVTQVYTPNAG--DGLKRLLERQIWDKKYADYLAEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER F +L
Sbjct: 157 DAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SPGFTDEERAGFTNLL 201
Query: 271 KE 272
+
Sbjct: 202 NK 203
>gi|345861274|ref|ZP_08813541.1| exodeoxyribonuclease III [Desulfosporosinus sp. OT]
gi|344325629|gb|EGW37140.1| exodeoxyribonuclease III [Desulfosporosinus sp. OT]
Length = 250
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 113/245 (46%), Gaps = 61/245 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VKN F +F + D+ +QE ++
Sbjct: 1 MKLISWNVNGIRACVKNG---FLDFFAKENADIFCIQETKV------------------- 38
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+EE++ PF+ Y +W+ A K Y+GTA+ K +P K+ + + K
Sbjct: 39 ---QEEQI---------PFRVEGYYQYWNFAQKKGYSGTAIFSK--MEPNKIVYGMGKE- 83
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLI 217
+++ +GRVI EF +Y++ Y PN+ + + R KW++ ++ + KP+I
Sbjct: 84 -EHDQEGRVITLEFGEYYVVTVYTPNS--QRGLARLEYRMKWEEDFLNYLKDLENSKPVI 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI-- 275
CGDLNV+H EID+ +P N+++ GF+ ER +F ++ +
Sbjct: 141 VCGDLNVAHTEIDLKNP------------STNRKN---AGFSAEERNKFDELMNNGFVDT 185
Query: 276 FLCFY 280
F FY
Sbjct: 186 FRFFY 190
>gi|221330655|ref|NP_001137776.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
gi|220901923|gb|ACL82983.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
Length = 706
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 97/230 (42%), Gaps = 51/230 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN L +K + I +PD+ LQE + N Q ++ T
Sbjct: 454 LKICSWNVAGLRAWLKKDG---LQLIDLEEPDIFCLQETKC---------ANDQLPEEVT 501
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y +W YAG A+ K P V + + ++
Sbjct: 502 R-----------------LPGYHPYWLCMPGGYAGVAIYSK--IMPIHVEYGIGNE--EF 540
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ GR+I AE+E FYL+N Y PN+G K + + R +W+K Q +V + KP++ CG
Sbjct: 541 DDVGRMITAEYEKFYLINVYVPNSGRK--LVNLEPRMRWEKLFQAYVKKLDALKPVVICG 598
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
D+NVSH ID+ +P K + GFT ER + +L
Sbjct: 599 DMNVSHMPIDLENP---------------KNNTKNAGFTQEERDKMTELL 633
>gi|157127237|ref|XP_001654881.1| ap endonuclease [Aedes aegypti]
gi|108872984|gb|EAT37209.1| AAEL010781-PA [Aedes aegypti]
Length = 612
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
Query: 120 FKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 179
K Y +W YAG A+ KK P V++ L + + DGR++ AE+E F+L+
Sbjct: 409 IKGYHPYWLCKPGGYAGVAIYSKK--MPFNVTYGLGDE--EQDADGRLLTAEYEKFFLVC 464
Query: 180 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFA 238
Y PN G + +R +WD++ +++ K P+I CGD+NV+HEEID+++P+
Sbjct: 465 VYVPNAG--RGLVTLPKRMRWDEKFHKYLKDLDAKKPVILCGDMNVAHEEIDLANPK--T 520
Query: 239 AAKLNGYVPPNKE 251
K G+ P +E
Sbjct: 521 NKKNAGFTPEERE 533
>gi|328767146|gb|EGF77197.1| hypothetical protein BATDEDRAFT_20862 [Batrachochytrium
dendrobatidis JAM81]
Length = 394
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 36/214 (16%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KF+ WN L +K + +I D DV+ LQE +M A+ D +
Sbjct: 116 KFIAWNVAGLRASLKK---DMMRYIEAEDADVVCLQETKMNAS------------LDTSM 160
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYE 162
SR++ P + +WS +K + ++V +P V + + +A+ +
Sbjct: 161 FSRKQY----------PHQ----YWSHCTTKKGYSGVMVLSKVKPLSVEYKMGHSAI--D 204
Query: 163 PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 221
+GR ++ E++ FY + Y N G + +R+ ++++F+ + S KP+IW GD
Sbjct: 205 DEGRFVILEYQDFYYIGCYIMNAG--ADLGRLDLKREHYVKLKKFMGELQSKKPVIWSGD 262
Query: 222 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 255
LNV+H EID++ P K G+ P +ED+G
Sbjct: 263 LNVAHTEIDLARPA--TNTKSAGFTPEEREDFGN 294
>gi|419842389|ref|ZP_14365737.1| exodeoxyribonuclease III [Streptococcus infantis ATCC 700779]
gi|385703866|gb|EIG40968.1| exodeoxyribonuclease III [Streptococcus infantis ATCC 700779]
Length = 275
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 106/240 (44%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQDVLQTLVAENADIIAIQETKLSATGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ ++ F Y+ W A YAGT L KK P +S
Sbjct: 58 EVLEEL------------------FPGYENTWRSSQEPARKGYAGTMFLYKKELTPT-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+TF++ Y PN G + + R+ WD + E++ Q
Sbjct: 99 FPEIGAPSTMDSEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEEREGFTNLL 201
>gi|403365259|gb|EJY82409.1| Exonuclease III [Oxytricha trifallax]
Length = 645
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 35/202 (17%)
Query: 35 ENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
E+ K D L WN N L + N F+ DPD++ E++ K A
Sbjct: 68 EDFKSDQLNIWVWNINGLQAVI--NKGMLDVFLQGEDPDIVCFNEIKTDPEKIKSA---- 121
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSF 152
+ + K+Y+ +W+ + SK Y+GT L+ K +P KV+F
Sbjct: 122 -------------------SFHTKIPKDYEQYWNCSKSKKGYSGTGLITK--IKPIKVTF 160
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 211
+ +++ +GRVI AEF F L+ Y PN+G S+ R ++WDK +++ +
Sbjct: 161 DI--GIEEHDQEGRVITAEFSKFVLVAVYVPNSGDDLRRLSY-RTQEWDKAFFDYLDRTR 217
Query: 212 --SGKPLIWCGDLNVSHEEIDV 231
+ KPLI GDLNV+ E+DV
Sbjct: 218 IETNKPLILTGDLNVARNELDV 239
>gi|402813355|ref|ZP_10862950.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
gi|402509298|gb|EJW19818.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
Length = 263
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 108/234 (46%), Gaps = 58/234 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D D+ +QE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVNKG---FLDYFREMDADIFCVQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
E Y+ +W+ A K Y+GTA+ KK +P V + +E+
Sbjct: 46 DLGEE----------------YEQYWNYALKKGYSGTAVFTKK--KPLSVRYGIEENE-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ--CSGKPLIW 218
EP+GR++ EFE+F+L+N Y PN+ + + S R + F LQ + KP+I
Sbjct: 86 -EPEGRILTLEFESFFLVNVYTPNS---KRDLSRLEERLEWEERFRFYLQKLDACKPVIV 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
CGDLNV+H+ ID+ + +K + G GFT ER++ IL++
Sbjct: 142 CGDLNVAHQVIDLKN---------------SKSNHGNSGFTTEEREKM-TILQD 179
>gi|189238676|ref|XP_969559.2| PREDICTED: similar to ap endonuclease [Tribolium castaneum]
Length = 1246
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 83/155 (53%), Gaps = 27/155 (17%)
Query: 120 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 178
+ Y+ W +D YAG ++VK +P V + ++ + +++ +GR I E+ETF+++
Sbjct: 1042 IEGYETLWCCSDKDGYAGVGIMVKD--KPLNVIYGID--SKEHDTEGRCITVEYETFFVV 1097
Query: 179 NTYAPNNGWKEEEN--SFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPE 235
N Y P+ G N + +R W+++ ++F+ S KP+I CGD+NV+H+EID+++P
Sbjct: 1098 NVYVPHAG----RNLVTLPKRLDWNEQFEKFIKNLDSQKPVIICGDMNVAHKEIDLANP- 1152
Query: 236 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
K + GF++ ER A L
Sbjct: 1153 --------------KTNTNSAGFSVEERDGMTAFL 1173
>gi|421893268|ref|ZP_16323815.1| Exodeoxyribonuclease III [Streptococcus pyogenes NS88.2]
gi|379980990|emb|CCG27537.1| Exodeoxyribonuclease III [Streptococcus pyogenes NS88.2]
Length = 275
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPT---KKHI 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGTALLVKKCFQPKKVS 151
E AL S F NY +W S A YAGT L K P ++
Sbjct: 58 E-----------------ALLSY-FPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPV-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EFE F++ Y PN G + R+ WD + +++ +
Sbjct: 99 FPEIGAPTTMDAEGRIITLEFEDFFVTQVYTPNAG--DGLRRLDDRQIWDHKYADYLTEL 156
Query: 212 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
+ KP++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 157 DTQKPVLATGDYNVAHKEIDLANPS------------SNRR---SPGFTDEERQGFTNLL 201
>gi|402828442|ref|ZP_10877330.1| exodeoxyribonuclease III [Slackia sp. CM382]
gi|402286525|gb|EJU34996.1| exodeoxyribonuclease III [Slackia sp. CM382]
Length = 264
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 100/244 (40%), Gaps = 68/244 (27%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L VK F D DV ALQE ++
Sbjct: 1 MRLISWNVNGLRAVVKKG---FDEAFAALDADVFALQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L Y WS A+ K Y+GTA+ ++ +P +V + AL
Sbjct: 39 ---QEGQIEL-------DLPGYVQNWSYAEKKGYSGTAVFSRE--EPLQVVHHVGTPALD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG------- 213
E GR+ EFE F+ ++ Y PN + E + R WD +EF
Sbjct: 87 TE--GRICACEFEKFWFVDVYTPNA--QPELARLEHRMAWDAAFREFCKNLEAGVVPEGL 142
Query: 214 -------KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
KP+I CGD NV+H+EID+ +P + + G PGF+ ER F
Sbjct: 143 GYASAEPKPVIMCGDFNVAHQEIDLKNP---------------RSNRGSPGFSDEERSSF 187
Query: 267 GAIL 270
++L
Sbjct: 188 TSLL 191
>gi|421487519|ref|ZP_15934921.1| exodeoxyribonuclease III [Streptococcus oralis SK304]
gi|400370449|gb|EJP23433.1| exodeoxyribonuclease III [Streptococcus oralis SK304]
Length = 275
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ E + + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ ++ F Y+ W A YAGT L KK P +S
Sbjct: 58 EILEEL------------------FPGYENTWRSSQEPARKGYAGTMFLYKKELTPT-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+TF++ Y PN G + + R+ WD + E++ Q
Sbjct: 99 FPEIGAPSTMDLEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLAQL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER F +L
Sbjct: 157 DKEKPVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEERAGFTNLL 201
>gi|331002672|ref|ZP_08326187.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
gi|330407085|gb|EGG86589.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
Length = 262
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 53/229 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F +F D D+ +QE ++ +
Sbjct: 13 KMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIE-------------- 55
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYE 162
L P + +Y W A Y+G A+ K +P V++ + +++
Sbjct: 56 ------------LDLPGYYDY--WNYAAKKGYSGVAVFTKD--KPIGVTYGI--GIEEHD 97
Query: 163 PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 221
+GRVI AE++ FYL+ Y PN+ + R W+ ++VL+ KP+I+CGD
Sbjct: 98 NEGRVITAEYDDFYLITCYTPNS--QRGLTRLDYRMAWEDAFLDYVLKLEEKKPVIFCGD 155
Query: 222 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
LNV+H+EID+ +P K + GFT ER + +L
Sbjct: 156 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKMDIVL 189
>gi|269216697|ref|ZP_06160551.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
gi|269129931|gb|EEZ61014.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
Length = 264
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 101/244 (41%), Gaps = 68/244 (27%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L VK F+ D DV ALQE ++
Sbjct: 1 MRLISWNVNGLRAVVKKG---FNEAFAALDADVFALQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L Y WS A+ K Y+GTA+ ++ +P +V + AL
Sbjct: 39 ---QEGQIEL-------DLPGYVQNWSYAEKKGYSGTAVFSRE--EPLQVVHHVGTPALD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG------- 213
E GR+ EFE F+ ++ Y PN + E + R WD +EF
Sbjct: 87 TE--GRICACEFEKFWFVDVYTPNA--QPELARLEHRMAWDAAFREFCKNLEAGVVPEGL 142
Query: 214 -------KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
KP+I CGD NV+H+EID+ +P + + G PGF+ ER F
Sbjct: 143 GYASAEPKPVIMCGDFNVAHQEIDLKNP---------------RSNRGNPGFSDEERSSF 187
Query: 267 GAIL 270
++L
Sbjct: 188 TSLL 191
>gi|169837263|ref|ZP_02870451.1| exonuclease III [candidate division TM7 single-cell isolate TM7a]
Length = 267
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 110/243 (45%), Gaps = 62/243 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ +WN N + +K F FI+ + PD++ LQE + A KN E+
Sbjct: 3 MRLYSWNVNGIRAVIKKG--TFLPFISEYQPDILCLQETK--------AKKNQVEI---- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL-EKTALK 160
P + ++IW S + Y+GTA+ K +P E K
Sbjct: 49 --------------DLPDY--FEIWNSAERAGYSGTAIFSKA--KPLNTWLDFPEDIVKK 90
Query: 161 YEPD----------GRVILAEFETFYLLNTYAPNNGWKEEENSFQ-RRRKWDKRIQEFVL 209
Y D GR+I AEF+ F + Y PN+ K + + Q R +KWDK E++
Sbjct: 91 YNLDQDDYGNPNNEGRIIAAEFDNFIVATVYTPNS--KGDLSRLQLRHQKWDKAWLEYMK 148
Query: 210 QC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
+ S KP+++CGDLNV+H E D+++P+ PN G+ GFT ER F A
Sbjct: 149 KLESIKPVLFCGDLNVAHTEDDLANPK------------PNI---GKHGFTNEERAGFDA 193
Query: 269 ILK 271
++
Sbjct: 194 FIQ 196
>gi|148927710|ref|ZP_01811154.1| exodeoxyribonuclease III Xth [candidate division TM7 genomosp.
GTL1]
gi|147886940|gb|EDK72466.1| exodeoxyribonuclease III Xth [candidate division TM7 genomosp.
GTL1]
Length = 266
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 102/241 (42%), Gaps = 60/241 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +WN N + R N F F+ DPD++ LQE T
Sbjct: 1 MKIYSWNVNGI--RAVVNKGAFQKFVKEHDPDILCLQE---------------------T 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK- 160
KA R + I + P + + W S Y+GTA+ K QP + + +K
Sbjct: 38 KAERGQAEIDL-----PHY--IENWNSAVKKGYSGTAIFSKT--QPLSIINGFPEDIIKK 88
Query: 161 --YEPD--------GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
E D GRV+ AEFE FY++ Y PN+ +E R + WD +V Q
Sbjct: 89 YKVEGDVYGDPNKEGRVMAAEFEDFYIVTVYTPNSK-RELTRLTLREKHWDPAFLAYVKQ 147
Query: 211 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
KP+I+CGDLNV+H E D++ P+ + G+ GFT ER+ F
Sbjct: 148 LEKTKPVIFCGDLNVAHTEDDLARPD---------------TNHGEHGFTDEEREGFQKF 192
Query: 270 L 270
L
Sbjct: 193 L 193
>gi|21909832|ref|NP_664100.1| 3'-exo-deoxyribonuclease [Streptococcus pyogenes MGAS315]
gi|21904018|gb|AAM78903.1| putative 3'-exo-deoxyribonuclease [Streptococcus pyogenes MGAS315]
Length = 275
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 104/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPT---KKHI 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGTALLVKKCFQPKKVS 151
E AL S F NY +W S A YAGT L K P ++
Sbjct: 58 E-----------------ALLSY-FPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPV-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EFE F++ Y PN G + R+ WD + +++ +
Sbjct: 99 FPEIGAPTTMDAEGRIITLEFEDFFVTQVYTPNAG--DGLRRLDDRQIWDHKYADYLTEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 157 DAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SPGFTDEERQGFTNLL 201
>gi|322375755|ref|ZP_08050267.1| exodeoxyribonuclease III [Streptococcus sp. C300]
gi|321279463|gb|EFX56504.1| exodeoxyribonuclease III [Streptococcus sp. C300]
Length = 275
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ E + + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ ++ F Y+ W A YAGT L KK P +S
Sbjct: 58 EILEEL------------------FPGYENAWRSSQEPARKGYAGTMFLYKKELTPT-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+TF++ Y PN G + + R+ WD + E++ Q
Sbjct: 99 FPEIGAPSTMDLEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLAQL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER F +L
Sbjct: 157 DKEKPVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEERAGFTNLL 201
>gi|167957331|ref|ZP_02544405.1| exonuclease III [candidate division TM7 single-cell isolate TM7c]
Length = 265
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 110/243 (45%), Gaps = 62/243 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ +WN N + +K F FI+ + PD++ LQE + A KN E+
Sbjct: 1 MRLYSWNVNGIRAVIKKG--TFLPFISEYQPDILCLQETK--------AKKNQVEI---- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL-EKTALK 160
P + ++IW S + Y+GTA+ K +P E K
Sbjct: 47 --------------DLPDY--FEIWNSAERAGYSGTAIFSKA--KPLNTWLDFPEDIVKK 88
Query: 161 YEPD----------GRVILAEFETFYLLNTYAPNNGWKEEENSFQ-RRRKWDKRIQEFVL 209
Y D GR+I AEF+ F + Y PN+ K + + Q R +KWDK E++
Sbjct: 89 YNLDQDDYGNPNNEGRIIAAEFDNFIVATVYTPNS--KGDLSRLQLRHQKWDKAWLEYMK 146
Query: 210 QC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
+ S KP+++CGDLNV+H E D+++P+ PN G+ GFT ER F A
Sbjct: 147 KLESIKPVLFCGDLNVAHTEDDLANPK------------PNI---GKHGFTNEERAGFDA 191
Query: 269 ILK 271
++
Sbjct: 192 FIQ 194
>gi|421276707|ref|ZP_15727528.1| exodeoxyribonuclease III [Streptococcus mitis SPAR10]
gi|395876913|gb|EJG87985.1| exodeoxyribonuclease III [Streptococcus mitis SPAR10]
Length = 275
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 106/240 (44%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQDVLQTLVAENADIIAIQETKLSATGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ ++ F Y+ W A YAGT L KK P +S
Sbjct: 58 EVLEEL------------------FPGYENTWRSSQEPARKGYAGTMFLYKKELTPT-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+TF++ Y PN G + + R+ WD + E++ Q
Sbjct: 99 FPEIGAPSTMDSEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEEREGFTNLL 201
>gi|419780861|ref|ZP_14306700.1| exodeoxyribonuclease III [Streptococcus oralis SK100]
gi|383184861|gb|EIC77368.1| exodeoxyribonuclease III [Streptococcus oralis SK100]
Length = 275
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ E + + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ ++ F Y+ W A YAGT L KK P +S
Sbjct: 58 EILEEL------------------FPGYENAWRSSQEPARKGYAGTMFLYKKELTPT-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+TF++ Y PN G + + R+ WD + E++ Q
Sbjct: 99 FPEIGAPSTMDLEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLAQL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER F +L
Sbjct: 157 DKEKPVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEERAGFTNLL 201
>gi|403374064|gb|EJY86966.1| Exonuclease III [Oxytricha trifallax]
Length = 628
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 32 SSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAP 91
+ E+ K D L WN N L + N F+ DPD++ E++ K A
Sbjct: 65 AKHEDFKSDQLNIWVWNINGLQAVI--NKGMLDVFLQGEDPDIVCFNEIKTDPEKIKSA- 121
Query: 92 KNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKK 149
+ + K+Y+ +W+ + SK Y+GT L+ K +P K
Sbjct: 122 ----------------------SFHTKIPKDYEQYWNCSKSKKGYSGTGLITK--IKPIK 157
Query: 150 VSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 209
V+F + +++ +GRVI AEF F L+ Y PN+G S+ R ++WDK +++
Sbjct: 158 VTFDI--GIEEHDQEGRVITAEFSKFVLVAVYVPNSGDDLRRLSY-RTQEWDKAFFDYLD 214
Query: 210 QC---SGKPLIWCGDLNVSHEEIDV 231
+ + KPLI GDLNV+ E+DV
Sbjct: 215 RTRIETNKPLILTGDLNVARNELDV 239
>gi|306834074|ref|ZP_07467194.1| exodeoxyribonuclease III [Streptococcus bovis ATCC 700338]
gi|304423647|gb|EFM26793.1| exodeoxyribonuclease III [Streptococcus bovis ATCC 700338]
Length = 275
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 104/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + T + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAVMSRAVIDTLVTENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F Y++ W A YAGT L K P +S
Sbjct: 58 QILQDY------------------FPEYEVSWRSSVEPARKGYAGTMFLYKSSLTPS-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ +++ +
Sbjct: 99 YPEIGAPDTMDSEGRIITLEFDKFFVTQVYTPNAG--DGLKRLAERQIWDEKYADYLTEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DQVKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTNLL 201
>gi|423078997|ref|ZP_17067672.1| exodeoxyribonuclease III [Lactobacillus rhamnosus ATCC 21052]
gi|357548454|gb|EHJ30318.1| exodeoxyribonuclease III [Lactobacillus rhamnosus ATCC 21052]
Length = 253
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 59/244 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
LK ++WN N L +K +F D D LQE +M A + D P +Q
Sbjct: 2 LKMISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVELDLPGYYQ----- 53
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 54 -------------------------YFNYAERKGYSGTAIFTKH--KPLNVTYGM--GIP 84
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WD+ + + + K PL++
Sbjct: 85 EHDTEGRIITLEYPKFYLMTVYTPNSG--GELKRLDYRQQWDRDFLAYTNELAAKKPLVY 142
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--F 276
CGDLNV+HE ID+ + +K + GFT ER F L I F
Sbjct: 143 CGDLNVAHEPIDLKN---------------DKTNHHNAGFTDEERADFTKQLNSGFIDTF 187
Query: 277 LCFY 280
FY
Sbjct: 188 RHFY 191
>gi|229551812|ref|ZP_04440537.1| exodeoxyribonuclease III [Lactobacillus rhamnosus LMS2-1]
gi|421769410|ref|ZP_16206117.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus LRHMDP2]
gi|421772307|ref|ZP_16208963.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus LRHMDP3]
gi|229314756|gb|EEN80729.1| exodeoxyribonuclease III [Lactobacillus rhamnosus LMS2-1]
gi|411183875|gb|EKS51010.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus LRHMDP3]
gi|411184541|gb|EKS51673.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus LRHMDP2]
Length = 253
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 59/244 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
LK ++WN N L +K +F D D LQE +M A + D P +Q
Sbjct: 2 LKMISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVELDLPGYYQ----- 53
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 54 -------------------------YFNYAERKGYSGTAIFTKH--KPLNVTYGM--GIP 84
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WD+ + + + K PL++
Sbjct: 85 EHDTEGRIITLEYPKFYLMTVYTPNSG--GELKRLDYRQQWDRDFLAYTNELAAKKPLVY 142
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--F 276
CGDLNV+HE ID+ + +K + GFT ER F L I F
Sbjct: 143 CGDLNVAHEPIDLKN---------------DKTNHHNAGFTDEERADFTKQLNSGFIDTF 187
Query: 277 LCFY 280
FY
Sbjct: 188 RHFY 191
>gi|149011294|ref|ZP_01832541.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP19-BS75]
gi|147764284|gb|EDK71215.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP19-BS75]
Length = 278
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 50/246 (20%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKD 89
N K + +K ++WN +SL + ++ E + + D+IA+QE ++ A G
Sbjct: 16 NEKGNFMKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPT- 74
Query: 90 APKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCF 145
K H E+ ++ F Y+ W A YAGT L KK
Sbjct: 75 --KKHVEILEEL------------------FPGYENTWRSSQEPARKGYAGTMFLYKKEL 114
Query: 146 QPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ 205
P +SF + +GR+I EF+ F++ Y PN G + + R+ WD +
Sbjct: 115 TPT-ISFPEIGAPSTMDLEGRIITLEFDAFFVTQVYTPNAG--DGLKRLEERQVWDTKYA 171
Query: 206 EFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERK 264
E++ + KP++ GD NV+H EID+++P N+ PGFT ER
Sbjct: 172 EYLAELDKEKPVLATGDYNVAHNEIDLANP------------ASNRR---SPGFTDEERA 216
Query: 265 RFGAIL 270
F +L
Sbjct: 217 GFTNLL 222
>gi|420432830|ref|ZP_14931843.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
gi|393046920|gb|EJB47899.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
Length = 236
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 100/222 (45%), Gaps = 54/222 (24%)
Query: 63 FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122
F +F + D DV +QE +M + ++ FK
Sbjct: 5 FMDFFNSVDADVFCIQESKM-----------------------------QQEQNTFEFKG 35
Query: 123 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 181
Y +W+ A K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+N Y
Sbjct: 36 YFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIE--EHDKEGRVVTCEFESFYLVNVY 91
Query: 182 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 92 TPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP------ 143
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FLCFY 280
K + GF+ ER++F +L I F FY
Sbjct: 144 ---------KTNRKNAGFSDEEREKFSELLNAGFIDTFRYFY 176
>gi|288905926|ref|YP_003431148.1| 3'-exo-deoxyribonuclease [Streptococcus gallolyticus UCN34]
gi|306831945|ref|ZP_07465100.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325978892|ref|YP_004288608.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|336064803|ref|YP_004559662.1| exodeoxyribonuclease III [Streptococcus pasteurianus ATCC 43144]
gi|386338368|ref|YP_006034537.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288732652|emb|CBI14224.1| putative 3'-exo-deoxyribonuclease [Streptococcus gallolyticus
UCN34]
gi|304425871|gb|EFM28988.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325178820|emb|CBZ48864.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334281004|dbj|BAK28578.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|334283003|dbj|BAK30576.1| exodeoxyribonuclease III [Streptococcus pasteurianus ATCC 43144]
Length = 275
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 104/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + T + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAVMSRAVIDTLVTENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F Y++ W A YAGT L K P +S
Sbjct: 58 QILQDY------------------FPEYEVSWRSSVEPARKGYAGTMFLYKSSLTPS-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ +++ +
Sbjct: 99 YPEIGAPDTMDSEGRIITLEFDKFFVTQVYTPNAG--DGLKRLAERQIWDEKYADYLAEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DQVKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTNLL 201
>gi|313894410|ref|ZP_07827975.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
gi|313441234|gb|EFR59661.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
Length = 251
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 38/194 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + E N D D+ LQE ++
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFN---ELDADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ E++ +L P ++ Y W S Y+GTA+ + +P V+ + ++
Sbjct: 39 ---QPEQI----SLELPGYEQY--WNSAVKKGYSGTAVFTR--IKPLSVTNGI--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRVI AE++ FYL+ Y PN+ + E + R W+ + ++L+ K P+I CG
Sbjct: 86 DQEGRVITAEYDNFYLVCCYTPNS--QRELARLEYRMAWEDAFRNYLLELDKKKPVILCG 143
Query: 221 DLNVSHEEIDVSHP 234
DLNV+H+EID+ +P
Sbjct: 144 DLNVAHQEIDLKNP 157
>gi|407039177|gb|EKE39497.1| exodeoxyribonuclease III protein [Entamoeba nuttalli P19]
Length = 319
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 42/198 (21%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
D +K T+N S +K EF I +PD++ +QE ++
Sbjct: 68 DEIKIATYNVASWNAAMKKGLNEF---IKEENPDILCVQETKLQDG-------------- 110
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKT 157
+P Y ++S + +K YAGTA+L K+ +P ++ +K
Sbjct: 111 ----------------VNPMIDGYHCYFSASTAKKGYAGTAILSKE--EPLSIT---KKI 149
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-L 216
K GR+I E+E FYL+N+Y N+G + EN +R +WDK ++E + + K +
Sbjct: 150 NGKENEHGRIITVEYEKFYLVNSYVMNSG-QRLENLVKRTTEWDKDMREHLKELQKKKNV 208
Query: 217 IWCGDLNVSHEEIDVSHP 234
IWCGDLNV+ IDV+ P
Sbjct: 209 IWCGDLNVALRWIDVAKP 226
>gi|158340|gb|AAA62769.1| recombination repair protein [Drosophila melanogaster]
gi|3342457|gb|AAC27621.1| recombination repair protein 1 [Drosophila melanogaster]
Length = 679
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 97/230 (42%), Gaps = 51/230 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN L +K + I +PD+ LQE + N Q ++ T
Sbjct: 427 LKICSWNVAGLRAWLKKDG---LQLIDLEEPDIFCLQETKC---------ANDQLPEEVT 474
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y +W YAG A+ K P V + + ++
Sbjct: 475 R-----------------LPGYHPYWLCMPGGYAGVAIYSK--IMPIHVEYGIGNE--EF 513
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ GR+I AE+E FYL+N Y PN+G K + + R +W+K Q +V + KP++ CG
Sbjct: 514 DDVGRMITAEYEKFYLINVYVPNSGRK--LVNLEPRMRWEKLFQAYVKKLDALKPVVICG 571
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
D+NVSH ID+ +P K + GFT ER + +L
Sbjct: 572 DMNVSHMPIDLENP---------------KNNTKNAGFTQEERDKMTELL 606
>gi|335047397|ref|ZP_08540418.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
gi|333761205|gb|EGL38760.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
Length = 250
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K + ++ N I + D LQE++M + G D
Sbjct: 1 MRFVSWNVNGLRACIKKGFLDYFNEI---NADFFCLQEIKM-SEGQLDLE---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y+ +++ A K Y+GTA+ K + P V + + +
Sbjct: 47 ------------------LEGYETYYNYAQRKGYSGTAIFTK--YTPLSVKYGM--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I E+E F+L+ Y PN+ K+E R W+ + ++L+ + K +I C
Sbjct: 85 HDNEGRLITLEYEDFFLVTCYTPNS--KQELLRLDYRMVWEDAFRNYLLELNKTKSVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ +P K + GFT ER++ +L
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDQEREKMSILL 178
>gi|170051904|ref|XP_001861978.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167872934|gb|EDS36317.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 340
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 36/195 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +WN L V+ EF + PD++ LQE + +L ++
Sbjct: 88 VKISSWNVAGLRSWVEKGCLEF---LEHEAPDILCLQETKC----------TEDQLPEEA 134
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ K Y +W YAG A+ KK P VS+ L +
Sbjct: 135 RH----------------IKGYHPYWLCKPGGYAGVAIYSKK--MPFNVSYGLGDA--EQ 174
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ DGR++ AE+E FYL+ Y PN G K + +R +WD++ +++ K P+I CG
Sbjct: 175 DEDGRLLTAEYEKFYLVCVYVPNAGRKLV--TLPKRMRWDEKFLQYLRDLDAKKPVILCG 232
Query: 221 DLNVSHEEIDVSHPE 235
D+NV+H EID+++P+
Sbjct: 233 DMNVAHAEIDLANPK 247
>gi|17136678|ref|NP_476841.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|150421656|sp|P27864.2|RRP1_DROME RecName: Full=Recombination repair protein 1; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|7295875|gb|AAF51175.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|21428628|gb|AAM49974.1| LP05366p [Drosophila melanogaster]
Length = 679
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 97/230 (42%), Gaps = 51/230 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN L +K + I +PD+ LQE + N Q ++ T
Sbjct: 427 LKICSWNVAGLRAWLKKDG---LQLIDLEEPDIFCLQETKC---------ANDQLPEEVT 474
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y +W YAG A+ K P V + + ++
Sbjct: 475 R-----------------LPGYHPYWLCMPGGYAGVAIYSK--IMPIHVEYGIGNE--EF 513
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ GR+I AE+E FYL+N Y PN+G K + + R +W+K Q +V + KP++ CG
Sbjct: 514 DDVGRMITAEYEKFYLINVYVPNSGRK--LVNLEPRMRWEKLFQAYVKKLDALKPVVICG 571
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
D+NVSH ID+ +P K + GFT ER + +L
Sbjct: 572 DMNVSHMPIDLENP---------------KNNTKNAGFTQEERDKMTELL 606
>gi|282882297|ref|ZP_06290928.1| exodeoxyribonuclease III [Peptoniphilus lacrimalis 315-B]
gi|281297847|gb|EFA90312.1| exodeoxyribonuclease III [Peptoniphilus lacrimalis 315-B]
Length = 275
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 102/229 (44%), Gaps = 42/229 (18%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFITTF----DPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL L +N + + + DPD+ A+QE ++P G K H+
Sbjct: 1 MKFISWNIDSLNAALTSSSNRAILTRAVLSSIRDEDPDLFAVQETKLPPTG---LSKKHK 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ + F++Y + A YAGT + KK + K +
Sbjct: 58 EILE------------------KEFQDYSYVYVTSKEEARKSYAGTMIFYKKDLECK-AT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR++ EF+ FY Y PN G + R+ WDK+ E+ +
Sbjct: 99 YPEIGAPGSMDMEGRIVTLEFKDFYFSTVYTPNAG--DGLKRLSDRQVWDKKYLEYCQEL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 259
KPL+ CGD NV+H+EID+++P N + D + GFT
Sbjct: 157 DKNKPLVLCGDFNVAHKEIDLANPN-------NNHFSAGFTDEERTGFT 198
>gi|330834656|ref|YP_004409384.1| exodeoxyribonuclease III Xth [Metallosphaera cuprina Ar-4]
gi|329566795|gb|AEB94900.1| exodeoxyribonuclease III Xth [Metallosphaera cuprina Ar-4]
Length = 256
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 115/248 (46%), Gaps = 58/248 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN NSL + E I + + DV+ QE++ + P + Q L
Sbjct: 8 LKILSWNVNSLKSAIAKGLMEI---IKSEEYDVLMFQEIK-----TNQLPLDFQSL---- 55
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
P++ Y I S Y+GT L + +P V++ + K ++
Sbjct: 56 -----------------PYRAY-INPSKQKRGYSGTLTLTR--IEPISVTYGIGKE--EF 93
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGD 221
+ +GRVI EF++ +++N Y PN G + F+ R +++ QE+V GKP + CGD
Sbjct: 94 DVEGRVISTEFKSMFVINVYFPNAGEGLKRLDFKLR--FNRAFQEYVASL-GKPSVICGD 150
Query: 222 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FLCF 279
NV+HEEID++ P K++ GFT ERK F E+L+ F+
Sbjct: 151 FNVAHEEIDIARP---------------KDNVNHAGFTPEERKWF----HEFLLSGFVDT 191
Query: 280 YELAVMKP 287
+ L V +P
Sbjct: 192 FRLFVKEP 199
>gi|406672108|ref|ZP_11079342.1| exodeoxyribonuclease III (xth) [Facklamia hominis CCUG 36813]
gi|405579418|gb|EKB53524.1| exodeoxyribonuclease III (xth) [Facklamia hominis CCUG 36813]
Length = 275
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 109/248 (43%), Gaps = 44/248 (17%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L +N S + PDVIA+QE ++ G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSNRALMSRAVLRDLVELKPDVIAIQETKLSTKG---PTKKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ + F YQ+ W A YAG L KK +
Sbjct: 58 EILKEQ------------------FPEYQLAWRSSCEPARKGYAGVMFLYKKSIDAQVTY 99
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ AL + +GR++ E E +L N Y PN G E R+ WD++ +++++
Sbjct: 100 PEIGGPAL-MDCEGRILTLELEDLFLTNVYTPNAG--SELKRLADRQIWDQKYADYLVEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHP--EFFAAAKLNGYVPPNKEDWG---QPGFTIAERKR 265
KP+I GD NV+HEEID+++P F+A G+ ++ + + GFT + R
Sbjct: 157 DQQKPVIAMGDFNVAHEEIDLANPASNHFSA----GFTDEERQGFSRLLERGFTDSFRHL 212
Query: 266 FGAILKEY 273
G + +Y
Sbjct: 213 HGPVEGQY 220
>gi|261366200|ref|ZP_05979083.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
gi|282572018|gb|EFB77553.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
Length = 251
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 96/230 (41%), Gaps = 53/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L +K F T D D +QE +M + AP+ + E
Sbjct: 1 MKFVSWNVNGLRACLKKG---FEETFRTLDADFFCIQETKMQPGQADFAPEGYTEYI--- 54
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+S Y+GTA+ + V + LE+ +
Sbjct: 55 -------------------------YSADKKGYSGTAIWART--PALSVRYGLEEDLHNH 87
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
E GR I E+ FYL+N Y PN+ + E R +W+ ++ ++ KP+I CG
Sbjct: 88 E--GRAITLEYPDFYLVNLYVPNS--QNELARIDYRMQWEDDLRRYLQALDAQKPVILCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+H EID+ +P PN+ G GF+ ER + +L
Sbjct: 144 DLNVAHTEIDLKNP------------GPNR---GAAGFSDQERGKLDELL 178
>gi|450062698|ref|ZP_21844475.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML5]
gi|449205430|gb|EMC06177.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML5]
Length = 275
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 50/242 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K+ +
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGP--TKKHLR 58
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
LKD F +Y + W A YAGT L K QP ++
Sbjct: 59 ILKD-------------------YFPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPTTMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 271 KE 272
++
Sbjct: 202 EQ 203
>gi|139474328|ref|YP_001129044.1| exodeoxyribonuclease [Streptococcus pyogenes str. Manfredo]
gi|134272575|emb|CAM30841.1| exodeoxyribonuclease [Streptococcus pyogenes str. Manfredo]
Length = 275
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 104/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPT---KKHI 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGTALLVKKCFQPKKVS 151
E AL S F NY +W S A YAGT L K P ++
Sbjct: 58 E-----------------ALLSY-FPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPV-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EFE F++ Y PN G + R+ WD + +++ +
Sbjct: 99 FPEIGAPTTMDAEGRIITLEFEDFFVTQVYTPNAG--DGLRRLDDRQIWDHKYADYLTEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 157 DAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SPGFTDEERQGFTNLL 201
>gi|323483337|ref|ZP_08088727.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323691163|ref|ZP_08105441.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
gi|355627198|ref|ZP_09049134.1| exodeoxyribonuclease [Clostridium sp. 7_3_54FAA]
gi|323403435|gb|EGA95743.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323504773|gb|EGB20557.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
gi|354820443|gb|EHF04859.1| exodeoxyribonuclease [Clostridium sp. 7_3_54FAA]
Length = 251
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 100/235 (42%), Gaps = 55/235 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F + D D+ +QE ++ G D
Sbjct: 3 KLISWNVNGLRACVGKG---FLDIFKELDADIFCIQESKLQG-GQIDLE----------- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
Y +WS A+ K Y+GTAL K+ +P V++ L A +
Sbjct: 48 -----------------LDGYYQYWSYAEKKGYSGTALFTKE--EPLSVTYGLGIEAHDH 88
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
E GRVI AEF +Y++ Y PN+ ++ R +W+ ++ + KP+I+CG
Sbjct: 89 E--GRVITAEFPDYYVITCYTPNS--QDGLARLPYRMQWEDDFLSYLKKLEEHKPVIFCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
DLNV+H EID+ +P K + GFT ER +F +L+ I
Sbjct: 145 DLNVAHREIDLKNP---------------KSNRKNAGFTDEERGKFTQLLESGFI 184
>gi|94987973|ref|YP_596074.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS9429]
gi|94991856|ref|YP_599955.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS2096]
gi|94541481|gb|ABF31530.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS9429]
gi|94545364|gb|ABF35411.1| Exodeoxyribonuclease III [Streptococcus pyogenes MGAS2096]
Length = 303
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 108/254 (42%), Gaps = 50/254 (19%)
Query: 28 TTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVR 81
T T+ K+ +K ++WN +SL + P + + D D+IA+QE +
Sbjct: 15 VTITTRLSVRKRYQMKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETK 74
Query: 82 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGT 137
+ A G K H E LS F NY +W S A YAGT
Sbjct: 75 LSAKGPT---KKHIET----------------LLSY--FPNYLHVWRSSVEPARKGYAGT 113
Query: 138 ALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 197
L K P ++F + +GR+I EFE F++ Y PN G + R
Sbjct: 114 MFLYKNTLNPV-ITFPEIGAPTTMDAEGRIITLEFEDFFVTQVYTPNAG--DGLRRLDDR 170
Query: 198 RKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 256
+ WD + +++ + KP++ GD NV+H+EID+++P N+ P
Sbjct: 171 QIWDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SP 215
Query: 257 GFTIAERKRFGAIL 270
GFT ER+ F +L
Sbjct: 216 GFTDEERQGFTNLL 229
>gi|258507959|ref|YP_003170710.1| exodeoxyribonuclease III [Lactobacillus rhamnosus GG]
gi|257147886|emb|CAR86859.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus GG]
Length = 252
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 104/243 (42%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K +F D D LQE +M A +
Sbjct: 1 MKMISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y ++ A+ K Y+GTA+ K +P V++ + +
Sbjct: 45 -------------LDLPGYYQY---FNYAERKGYSGTAIFTKH--KPLNVTYGM--GIPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GR+I E+ FYL+ Y PN+G E R++WD+ + + + K PL++C
Sbjct: 85 HDTEGRIITLEYTKFYLMTVYTPNSG--GELKRLDYRQQWDRDFLAYTNELAAKKPLVYC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HE ID+ + +K + GFT ER F L I F
Sbjct: 143 GDLNVAHEPIDLKN---------------DKTNHHNAGFTDEERADFTKQLNSGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 HFY 190
>gi|450159907|ref|ZP_21879708.1| putative exodeoxyribonuclease III [Streptococcus mutans 66-2A]
gi|449240671|gb|EMC39334.1| putative exodeoxyribonuclease III [Streptococcus mutans 66-2A]
Length = 275
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 50/242 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K+ +
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGP--TKKHLR 58
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
LKD F +Y + W A YAGT L K QP ++
Sbjct: 59 ILKD-------------------YFPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERDGFTHLL 201
Query: 271 KE 272
++
Sbjct: 202 EQ 203
>gi|433449048|ref|ZP_20411913.1| exodeoxyribonuclease III [Weissella ceti NC36]
gi|429539437|gb|ELA07474.1| exodeoxyribonuclease III [Weissella ceti NC36]
Length = 275
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 106/238 (44%), Gaps = 49/238 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE----FSNF--ITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++F++WN +SL +++ P +S I PDV+A+QE + P G
Sbjct: 1 MQFISWNIDSLNAAIQHKSPRGEMTWSTLVEIAAMAPDVLAIQETKSPITG--------- 51
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFS 153
+EK+I F Y I+ + + + Y+GT +L K +P ++
Sbjct: 52 ------MTGPQEKVI------KELFPEYHIYQNTSTERKGYSGTMMLSKT--EPLNITTP 97
Query: 154 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG 213
+ +GR++ EFE ++ Y PN+G E + R+ WD + Q ++
Sbjct: 98 SIDAPEGMDTEGRILTLEFENAFVSTVYTPNSG--RELARLEDRQGWDAKYQAYIESLDA 155
Query: 214 -KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I+ GD+NV+HE ID+ +P K + GFT ER F ++L
Sbjct: 156 IKPVIFSGDMNVAHESIDLKNP---------------KANRRSAGFTDEERAGFTSLL 198
>gi|297583616|ref|YP_003699396.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
gi|297142073|gb|ADH98830.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
Length = 254
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L ++ F +F D+ A+QE+++ QE + D
Sbjct: 1 MKLISWNVNGLRACIRKG---FLSFFEEAGADLFAVQEIKL------------QEGQVDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y+ +W+ A+ K Y+GTA+ K +P +V F +
Sbjct: 46 -----------------DLQGYRQYWNYAEKKGYSGTAVFTK--VEPLRV-FRNGVGNER 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+ +GR++ EF +F+L+N Y PN+ + + R +W+ ++ + KP+I C
Sbjct: 86 QQSEGRILTLEFASFFLVNVYTPNS--QRDLARLHERLQWEDAFYAYLQELENEKPVIVC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD+NV+HEEID+ + K + G GFT ER + + E+LI
Sbjct: 144 GDMNVAHEEIDLRNA---------------KSNRGNSGFTTEERAKMTRLQSEWLI 184
>gi|385260230|ref|ZP_10038379.1| exodeoxyribonuclease III [Streptococcus sp. SK140]
gi|385192150|gb|EIF39560.1| exodeoxyribonuclease III [Streptococcus sp. SK140]
Length = 275
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 107/240 (44%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQDVLQTLVAEDADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ ++ L F Y+ W A YAGT L KK P VS
Sbjct: 58 EV--------------LKEL----FPGYENTWRSSQEPARKGYAGTMFLYKKELTPT-VS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+TF++ Y PN G + + R+ WD + E++ +
Sbjct: 99 FPEIGAPSTMDLEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLAEL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEEREGFTNLL 201
>gi|126651518|ref|ZP_01723722.1| exodeoxyribonuclease [Bacillus sp. B14905]
gi|126591771|gb|EAZ85867.1| exodeoxyribonuclease [Bacillus sp. B14905]
Length = 251
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 98/231 (42%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + + F +F + D +QE + A + A
Sbjct: 1 MKFISWNVNGIRACLGKG---FLDFFHQIEADFFCIQETKCQAGQVELA----------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+Y+ +W+ A K Y+GTA+ K P V + +
Sbjct: 47 ------------------LDDYEQYWNYAQKKGYSGTAIFTKHT--PLSVMYGVGDE--D 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
+ +GR+I E++ FYL+N Y PN + + R W+ R+ ++ S KP+++C
Sbjct: 85 SQDEGRIITLEYQNFYLVNVYTPNA--QRDLARLPLRLTWEDRLAGYLQDLNSKKPVVYC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H EID+ + K + G GFT ER +F +L
Sbjct: 143 GDLNVAHTEIDLKNA---------------KSNVGNSGFTYEERAKFSELL 178
>gi|291546831|emb|CBL19939.1| exodeoxyribonuclease III [Ruminococcus sp. SR1/5]
Length = 251
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 105/244 (43%), Gaps = 59/244 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N + + F D D+ LQE + K + P HQ
Sbjct: 1 MKFISWNVNGIRACITKG---FEERFHELDADIFCLQETKCQQGQVKLELPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ + Y+GTA+ K+ +P ++ +
Sbjct: 53 -------------------------YWNYANRRGYSGTAIFTKR--EPLSAAYGI--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GRVI EF+ +Y + Y PN+ + E + R KW++ ++L+ KP+I
Sbjct: 84 EHDKEGRVITLEFDEYYFVTVYTPNS--QSELRRLEYRMKWEEDFLAYLLKLQEKKPVIC 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--F 276
CGDLNV+H+EID+ +P K + GFT ER F L+ I F
Sbjct: 142 CGDLNVAHQEIDLKNP---------------KTNRKNAGFTDEERACFTRALESGFIDTF 186
Query: 277 LCFY 280
FY
Sbjct: 187 RYFY 190
>gi|422844657|ref|ZP_16891367.1| exodeoxyribonuclease III [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
gi|325685174|gb|EGD27297.1| exodeoxyribonuclease III [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 275
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 105/245 (42%), Gaps = 60/245 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWP--EFSNFIT----TFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + P E + + DPDV+ALQE ++PA+G K HQ
Sbjct: 1 MRLISWNIDSLNAALTGTSPRAEMTRGVLKNLHDLDPDVLALQETKLPASGPS---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSF 152
AL+ + Y +W S A YAGT L KK P
Sbjct: 58 A-----------------ALADLFPEYYFVWRSSMEPARKGYAGTMFLYKKGLDPVVTRP 100
Query: 153 SLEKTALKYEP---DGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQE 206
+ EP +GR++ EF FY+ Y PN G N R R++WDK +
Sbjct: 101 EIGAP----EPMDFEGRILTLEFPDFYVTQVYTPNAG-----NGLVRLGDRQEWDKCYRA 151
Query: 207 FVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKR 265
++ + K P++ GD N +++EID+ HPE + GFT ER
Sbjct: 152 YLEELDKKKPVLASGDFNAAYQEIDLKHPE---------------NNHHSAGFTDEERAG 196
Query: 266 FGAIL 270
FG +L
Sbjct: 197 FGQLL 201
>gi|418974501|ref|ZP_13522411.1| exodeoxyribonuclease III [Streptococcus oralis SK1074]
gi|383348928|gb|EID26880.1| exodeoxyribonuclease III [Streptococcus oralis SK1074]
Length = 275
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ E + + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ ++ F Y+ W A YAGT L KK P +S
Sbjct: 58 EVLEEL------------------FPGYENTWRSSQEPARKGYAGTMFLYKKELTPT-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+TF++ Y PN G + + R+ WD + E++ Q
Sbjct: 99 FPEIGAPSTMDLEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDIKYAEYLAQL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER F +L
Sbjct: 157 DKEKPVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEERAGFTNLL 201
>gi|449881939|ref|ZP_21784704.1| putative exodeoxyribonuclease III [Streptococcus mutans SA38]
gi|449250748|gb|EMC48797.1| putative exodeoxyribonuclease III [Streptococcus mutans SA38]
Length = 275
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 50/242 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K+ +
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGP--TKKHLR 58
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
LKD F +Y + W A YAGT L K QP ++
Sbjct: 59 ILKD-------------------YFPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDGFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 271 KE 272
++
Sbjct: 202 EQ 203
>gi|387785665|ref|YP_006250761.1| putative exodeoxyribonuclease III [Streptococcus mutans LJ23]
gi|379132066|dbj|BAL68818.1| putative exodeoxyribonuclease III [Streptococcus mutans LJ23]
Length = 297
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 50/242 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K+ +
Sbjct: 23 MKLISWNIDSLNAALTSDSTRALLSRAVLDTLMEQDADILAIQETKLSAKGP--TKKHLR 80
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
LKD F +Y + W A YAGT L K QP ++
Sbjct: 81 ILKD-------------------YFPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 120
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 121 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 178
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 179 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 223
Query: 271 KE 272
++
Sbjct: 224 EQ 225
>gi|116628238|ref|YP_820857.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMD-9]
gi|386087152|ref|YP_006003026.1| Exonuclease III [Streptococcus thermophilus ND03]
gi|387910253|ref|YP_006340559.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus MN-ZLW-002]
gi|116101515|gb|ABJ66661.1| Exonuclease III [Streptococcus thermophilus LMD-9]
gi|312278865|gb|ADQ63522.1| Exonuclease III [Streptococcus thermophilus ND03]
gi|387575188|gb|AFJ83894.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus MN-ZLW-002]
Length = 275
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 50/245 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + + T + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGDSTRAQLSRAVIDTLVTENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ +D F +Y I W A YAGT L KK P ++
Sbjct: 58 QILEDY------------------FPDYVITWRSSVEPARKGYAGTMFLYKKELTPV-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+TF++ Y PN G + R+ WD++ +++ +
Sbjct: 99 YPEIGAPSTMDCEGRIITLEFDTFFVTQVYTPNAG--DGLKRLLERQIWDEKYADYLAEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER F +L
Sbjct: 157 DAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SPGFTDEERAGFTNLL 201
Query: 271 KEYLI 275
+ I
Sbjct: 202 NKGFI 206
>gi|24380027|ref|NP_721982.1| exodeoxyribonuclease III [Streptococcus mutans UA159]
gi|290579994|ref|YP_003484386.1| exodeoxyribonuclease III [Streptococcus mutans NN2025]
gi|449865178|ref|ZP_21778839.1| putative exodeoxyribonuclease III [Streptococcus mutans U2B]
gi|449872318|ref|ZP_21781457.1| putative exodeoxyribonuclease III [Streptococcus mutans 8ID3]
gi|449874956|ref|ZP_21781919.1| putative exodeoxyribonuclease III [Streptococcus mutans S1B]
gi|449893395|ref|ZP_21788687.1| putative exodeoxyribonuclease III [Streptococcus mutans SF12]
gi|449947417|ref|ZP_21807362.1| putative exodeoxyribonuclease III [Streptococcus mutans 11SSST2]
gi|449956392|ref|ZP_21809488.1| putative exodeoxyribonuclease III [Streptococcus mutans 4VF1]
gi|449969030|ref|ZP_21812969.1| putative exodeoxyribonuclease III [Streptococcus mutans 2VS1]
gi|449984183|ref|ZP_21818869.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM2]
gi|449999354|ref|ZP_21824494.1| putative exodeoxyribonuclease III [Streptococcus mutans N29]
gi|450005194|ref|ZP_21826552.1| putative exodeoxyribonuclease III [Streptococcus mutans NMT4863]
gi|450031272|ref|ZP_21833605.1| putative exodeoxyribonuclease III [Streptococcus mutans G123]
gi|450035308|ref|ZP_21834949.1| putative exodeoxyribonuclease III [Streptococcus mutans M21]
gi|450056224|ref|ZP_21841931.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML4]
gi|450081460|ref|ZP_21851743.1| putative exodeoxyribonuclease III [Streptococcus mutans N66]
gi|450094138|ref|ZP_21856912.1| putative exodeoxyribonuclease III [Streptococcus mutans W6]
gi|450098379|ref|ZP_21857975.1| putative exodeoxyribonuclease III [Streptococcus mutans SF1]
gi|450138344|ref|ZP_21872113.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML1]
gi|450143104|ref|ZP_21873237.1| putative exodeoxyribonuclease III [Streptococcus mutans 1ID3]
gi|450148336|ref|ZP_21875574.1| putative exodeoxyribonuclease III [Streptococcus mutans 14D]
gi|450166036|ref|ZP_21882130.1| putative exodeoxyribonuclease III [Streptococcus mutans B]
gi|450171670|ref|ZP_21884124.1| putative exodeoxyribonuclease III [Streptococcus mutans SM4]
gi|13182937|gb|AAK14994.1|AF233280_1 nuclease SmnA [Streptococcus mutans]
gi|24378017|gb|AAN59288.1|AE014995_5 putative exodeoxyribonuclease III [Streptococcus mutans UA159]
gi|254996893|dbj|BAH87494.1| putative exodeoxyribonuclease III [Streptococcus mutans NN2025]
gi|449152715|gb|EMB56415.1| putative exodeoxyribonuclease III [Streptococcus mutans 1ID3]
gi|449154571|gb|EMB58144.1| putative exodeoxyribonuclease III [Streptococcus mutans 8ID3]
gi|449168602|gb|EMB71410.1| putative exodeoxyribonuclease III [Streptococcus mutans 11SSST2]
gi|449170674|gb|EMB73370.1| putative exodeoxyribonuclease III [Streptococcus mutans 4VF1]
gi|449174469|gb|EMB76955.1| putative exodeoxyribonuclease III [Streptococcus mutans 2VS1]
gi|449180434|gb|EMB82591.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM2]
gi|449187090|gb|EMB88891.1| putative exodeoxyribonuclease III [Streptococcus mutans N29]
gi|449188836|gb|EMB90526.1| putative exodeoxyribonuclease III [Streptococcus mutans NMT4863]
gi|449191780|gb|EMB93240.1| putative exodeoxyribonuclease III [Streptococcus mutans G123]
gi|449195673|gb|EMB96986.1| putative exodeoxyribonuclease III [Streptococcus mutans M21]
gi|449207002|gb|EMC07686.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML4]
gi|449215265|gb|EMC15472.1| putative exodeoxyribonuclease III [Streptococcus mutans N66]
gi|449216620|gb|EMC16722.1| putative exodeoxyribonuclease III [Streptococcus mutans W6]
gi|449221576|gb|EMC21344.1| putative exodeoxyribonuclease III [Streptococcus mutans SF1]
gi|449234127|gb|EMC33151.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML1]
gi|449236016|gb|EMC34952.1| putative exodeoxyribonuclease III [Streptococcus mutans 14D]
gi|449240040|gb|EMC38735.1| putative exodeoxyribonuclease III [Streptococcus mutans B]
gi|449243722|gb|EMC42131.1| putative exodeoxyribonuclease III [Streptococcus mutans SM4]
gi|449254334|gb|EMC52243.1| putative exodeoxyribonuclease III [Streptococcus mutans S1B]
gi|449255826|gb|EMC53666.1| putative exodeoxyribonuclease III [Streptococcus mutans SF12]
gi|449264441|gb|EMC61783.1| putative exodeoxyribonuclease III [Streptococcus mutans U2B]
Length = 275
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 50/242 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K+ +
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGP--TKKHLR 58
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
LKD F +Y + W A YAGT L K QP ++
Sbjct: 59 ILKD-------------------YFPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 271 KE 272
++
Sbjct: 202 EQ 203
>gi|292670448|ref|ZP_06603874.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
gi|292647858|gb|EFF65830.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
Length = 250
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 98/230 (42%), Gaps = 53/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F + DV LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELNADVFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + +P VS+ + ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--VKPLSVSYGIGIE--EH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI E YL+ Y PN K R W+ + F+L KP++ CG
Sbjct: 86 DNEGRVITMELPDVYLVTVYTPNA--KRALERLDYRMAWEDSFRAFLLDLRAKKPVVVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+H EID+ +P K + GFT ER +FG +L
Sbjct: 144 DLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELL 178
>gi|422344654|ref|ZP_16425579.1| exodeoxyribonuclease [Selenomonas noxia F0398]
gi|355376723|gb|EHG23965.1| exodeoxyribonuclease [Selenomonas noxia F0398]
Length = 250
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 98/230 (42%), Gaps = 53/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F + DV LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELNADVFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + +P VS+ + ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--VKPLSVSYGIGIE--EH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI E YL+ Y PN K R W+ + F+L KP++ CG
Sbjct: 86 DNEGRVITMELPDVYLVTVYTPNA--KRALERLDYRMAWEDSFRAFLLDLRAKKPVVVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+H EID+ +P K + GFT ER +FG +L
Sbjct: 144 DLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELL 178
>gi|335029062|ref|ZP_08522574.1| exodeoxyribonuclease III [Streptococcus infantis SK1076]
gi|334269463|gb|EGL87880.1| exodeoxyribonuclease III [Streptococcus infantis SK1076]
Length = 275
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 106/240 (44%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQDVLQTLVAEDADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ ++ F Y+ W A YAGT L KK P +S
Sbjct: 58 EVLEEL------------------FPGYENTWRSSQEPARKGYAGTMFLYKKELTPT-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+TF++ Y PN G + + R+ WD + E++ +
Sbjct: 99 FPEIGAPSTMDLEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQIWDVKYAEYLAEL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEEREGFTNLL 201
>gi|303232423|ref|ZP_07319115.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
gi|302481507|gb|EFL44575.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
Length = 259
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 38/200 (19%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQE 96
S+K + +WN N L +K + P F + + + + D+I +QE ++
Sbjct: 2 SQKHTYRLASWNVNGLRAVMKKD-PNFIDVVQSLNVDIIGIQETKL-------------- 46
Query: 97 LKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE 155
+E I AL P Y WS A+ K Y+GTA+ K+ P + ++
Sbjct: 47 ---------QEGQI---ALDLP---GYTQTWSYAERKGYSGTAVFSKEA--PLQTIHTIG 89
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK- 214
+A E GRV EF F+ +N Y PN+ K E R +WD+ + F+ K
Sbjct: 90 CSAADNE--GRVCALEFNDFWFVNVYTPNS--KNELARLDERMEWDEAYRSFLHTLDAKK 145
Query: 215 PLIWCGDLNVSHEEIDVSHP 234
P+I CGD N +HEEID+ +P
Sbjct: 146 PVITCGDFNCAHEEIDLKNP 165
>gi|338175515|ref|YP_004652325.1| exodeoxyribonuclease [Parachlamydia acanthamoebae UV-7]
gi|336479873|emb|CCB86471.1| exodeoxyribonuclease [Parachlamydia acanthamoebae UV-7]
Length = 251
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 54/236 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F +FI +DPD++ LQE T
Sbjct: 1 MKIISWNVNGIRSILKKG---FLDFINKYDPDILCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
KAS+E + + + +Q W S Y+GT + K+ +P V + +
Sbjct: 37 KASQENVQLNLS-------QYHQYWNSAQKKGYSGTCVFTKE--KPLNVENGILLDL--H 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR-RKWDKRIQEFVLQCS-GKPLIWC 219
+ +GR I E+ TF+L+N Y PN+ K + + + R ++WD ++ KP+I+C
Sbjct: 86 DKEGRTITLEYPTFFLVNVYVPNS--KRDLSRLEYRCKQWDVDFLNYLKNIERKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H E D++ P+ A +N + GFT ER F I++ +
Sbjct: 144 GDLNVAHTENDLAFPK----ANINNH-----------GFTAEERAGFDHIVESGFV 184
>gi|402846244|ref|ZP_10894559.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
gi|402268322|gb|EJU17703.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
Length = 250
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L +P+ I D D + LQE +M AG DA
Sbjct: 1 MKFISWNVNGLRAVFTKGFPD---IIKELDADFVCLQETKM-QAGQLDA----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+Y +W+ A K Y+GTA+ + +P VS+ + +
Sbjct: 46 -----------------DLPSYISYWNYAVKKGYSGTAIYTRH--EPLSVSYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ F+L+ Y PN+ +++ R W+ + ++ KP+I C
Sbjct: 85 HDQEGRVITLEYPEFFLVTVYTPNS--QDDLRRLDYRMTWEDAFRSYLKGLDAKKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER + +L I F
Sbjct: 143 GDLNVAHKEIDLKNP---------------KSNRRNAGFTDEERGKLQELLDAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|334127299|ref|ZP_08501227.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
gi|333389799|gb|EGK60957.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
Length = 255
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 99/235 (42%), Gaps = 53/235 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 6 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKM------------------- 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + +P V++ L ++
Sbjct: 44 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--VKPLSVAYGLGIE--EH 90
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI EFE YL+ Y PN+ K R W+ + F+L KP++ CG
Sbjct: 91 DHEGRVITMEFEDIYLVTVYTPNS--KNALARLDYRLVWEDAFRAFLLDLRAKKPVVVCG 148
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
DLNV+H EID+ +P K + GFT ER + +L I
Sbjct: 149 DLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKLTELLGAGFI 188
>gi|257870107|ref|ZP_05649760.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
gi|257804271|gb|EEV33093.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
Length = 261
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 99/235 (42%), Gaps = 55/235 (23%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
++ +KF++WN N L VK N F TFD D LQE ++ A +
Sbjct: 8 RRTNMKFISWNVNGLRAIVKKN---FLEAFETFDADFFCLQETKLQAGQIE--------- 55
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK 156
L P + Y W+ A+ K Y+GTA+ K+ +E+
Sbjct: 56 -----------------LDLPGYTQY---WNYAEKKGYSGTAIFAKEPALAAHYGIGIEE 95
Query: 157 TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKP 215
++ +GRVI E+ F+L+ Y PN + E R W+ + ++ KP
Sbjct: 96 ----HDAEGRVITLEYPEFFLVTCYTPNA--QNELRRLDYRMTWEDAFRAYLTDLKQQKP 149
Query: 216 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
+I CGDLNV+H+ ID+ + K + GFT ER++F +L
Sbjct: 150 VILCGDLNVAHQNIDLKNW---------------KTNQKNAGFTPEEREKFSTLL 189
>gi|333905554|ref|YP_004479425.1| 3'-exo-deoxyribonuclease [Streptococcus parauberis KCTC 11537]
gi|333120819|gb|AEF25753.1| putative 3'-exo-deoxyribonuclease [Streptococcus parauberis KCTC
11537]
gi|456370383|gb|EMF49279.1| Exodeoxyribonuclease III [Streptococcus parauberis KRS-02109]
gi|457096021|gb|EMG26492.1| Exodeoxyribonuclease III [Streptococcus parauberis KRS-02083]
Length = 275
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + I D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVIDTIVNQDADIIAIQETKLSATGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
E + E L + R+ P K Y AGT L KK P V+F
Sbjct: 58 EA---ILSYFPEYLHVWRSSVEPARKGY-----------AGTMFLYKKELNPT-VTFPEI 102
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 214
+ +GR+I EFE FY+ Y PN G + + R+ WD + +++ + K
Sbjct: 103 GAPTTMDAEGRIITLEFEDFYVTQVYTPNAG--DGLKRLEDRQAWDIQYADYLAELDKTK 160
Query: 215 PLIWCGDLNVSHEEIDVSHP 234
P++ GD NV+H EID+++P
Sbjct: 161 PVLATGDYNVAHHEIDLANP 180
>gi|168036056|ref|XP_001770524.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678232|gb|EDQ64693.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 363
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 38/202 (18%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFITTF----DPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN N L LL+ K E + I D DV+ LQE ++ K+
Sbjct: 97 VKLLSWNVNGLRALLKEKGAEHEQGSMIARLAAREDFDVLCLQETKL-------QEKDVA 149
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFS 153
+++ AS E L W + SK Y+GTA++ + +P V +
Sbjct: 150 DIRKSLLASHEVSL-----------------WGCSTSKLGYSGTAIISR--IKPISVQYG 190
Query: 154 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 212
L ++ +GR+I EF+TFY + +Y PN+G K E ++ R ++WD + + +
Sbjct: 191 L--GIPNHDQEGRLITCEFDTFYFVVSYVPNSGAKLERLAY-RTQEWDVALSSHLRELEK 247
Query: 213 GKPLIWCGDLNVSHEEIDVSHP 234
KP+I GDLN +HE+ID++ P
Sbjct: 248 KKPVILTGDLNCAHEDIDINDP 269
>gi|402301696|ref|ZP_10820957.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
gi|401723230|gb|EJS96766.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
Length = 250
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 100/231 (43%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N + VK F ++ D D A+QE + K EL+ D
Sbjct: 1 MKFVSWNVNGIRACVKKG---FLDYFHQVDADFFAIQETK--------CQKGQIELQLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y+ +W+ A+ K Y+GTA+ K P V + + + +
Sbjct: 49 --------------------GYEQYWNDAERKGYSGTAIFTKHT--PLSVQYGIGEDLI- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
+ +GRVI E+ FYL+ Y PN+ K + + R W++ ++ KP+I C
Sbjct: 86 -DQEGRVIALEYSKFYLVTCYTPNS--KRDLSRLPYRLSWEEHFLAYLKNLEEKKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H EID+ + K + G GFT ER + +L
Sbjct: 143 GDLNVAHTEIDLKNA---------------KSNHGNSGFTQEERGKMTTLL 178
>gi|410725723|ref|ZP_11364086.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
gi|410601734|gb|EKQ56234.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
Length = 252
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 105/235 (44%), Gaps = 55/235 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L VK F +F D D+ +QE ++ QE + D
Sbjct: 3 KLISWNVNGLRACVKKG---FLDFFKESDADIFCIQETKL------------QEGQID-- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L F +Y W+ A+ K Y+GTA+ K+ K+ +E+ +
Sbjct: 46 ------------LDLDGFNSY---WNYAEKKGYSGTAVFTKEEPLSVKIGIGIEE----H 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRV+ EF FYL+N Y PN+ K+ R W+ ++++ + K P+I CG
Sbjct: 87 DNEGRVLTLEFNDFYLVNVYTPNS--KQGLERLDYRMVWEDVFRQYLKELEKKKPVILCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
DLNV+H+EID+ +P K + GFT ER++ +L I
Sbjct: 145 DLNVAHKEIDLKNP---------------KVNRKNAGFTDEEREKITQLLDSGFI 184
>gi|94993733|ref|YP_601831.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS10750]
gi|94547241|gb|ABF37287.1| Exodeoxyribonuclease III [Streptococcus pyogenes MGAS10750]
Length = 303
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 109/253 (43%), Gaps = 50/253 (19%)
Query: 29 TETSSEENSKKDPLKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRM 82
T T+ K+ +K ++WN +SL + P + + D D+IA+QE ++
Sbjct: 16 TITTRLSVRKRYQMKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKL 75
Query: 83 PAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGTA 138
A G K H E LS F NY +W S A YAGT
Sbjct: 76 SAKGPT---KKHIET----------------LLSY--FPNYLHVWRSSVEPARKGYAGTM 114
Query: 139 LLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 198
L K P ++F + +GR+I EFE F++ Y PN G + R+
Sbjct: 115 FLYKNTLNPV-ITFPEIGAPTTMDAEGRIITLEFEDFFVTQVYTPNAG--DGLRRLDDRQ 171
Query: 199 KWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPG 257
WD + +++ + + KP++ GD NV+H+EID+++P N+ PG
Sbjct: 172 IWDHKYADYLTELDTQKPVLATGDYNVAHKEIDLANPS------------SNRR---SPG 216
Query: 258 FTIAERKRFGAIL 270
FT ER+ F +L
Sbjct: 217 FTDEERQGFTNLL 229
>gi|258539213|ref|YP_003173712.1| exodeoxyribonuclease III [Lactobacillus rhamnosus Lc 705]
gi|385834871|ref|YP_005872645.1| exodeoxyribonuclease III [Lactobacillus rhamnosus ATCC 8530]
gi|257150889|emb|CAR89861.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus Lc 705]
gi|355394362|gb|AER63792.1| exodeoxyribonuclease III [Lactobacillus rhamnosus ATCC 8530]
Length = 252
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 104/243 (42%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K +F D D LQE +M A +
Sbjct: 1 MKMISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y ++ A+ K Y+GTA+ K +P V++ + +
Sbjct: 45 -------------LDLPGYYQY---FNYAERKGYSGTAIFTKH--KPLNVTYGM--GIPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GR+I E+ FYL+ Y PN+G E R++WD+ + + + K PL++C
Sbjct: 85 HDTEGRIITLEYPKFYLMTVYTPNSG--GELKRLDYRQQWDRDFLAYTNELAAKKPLVYC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HE ID+ + +K + GFT ER F L I F
Sbjct: 143 GDLNVAHEPIDLKN---------------DKTNHHNAGFTDEERADFTKQLNSGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 HFY 190
>gi|169829765|ref|YP_001699923.1| exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
gi|168994253|gb|ACA41793.1| Exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
Length = 251
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 97/231 (41%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + + F +F + D +QE + A + A
Sbjct: 1 MKFISWNVNGIRACLGKG---FLDFFHQIEADFFCIQETKCQAGQVELA----------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y+ +W+ A K Y+GTA+ K P V + +
Sbjct: 47 ------------------LDGYEQYWNYAQKKGYSGTAIFTKHT--PLSVKYGVGDE--D 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
+ +GR+I E+E FYL+N Y PN + + R W++ + ++ S KP+++C
Sbjct: 85 SQDEGRIITLEYEDFYLVNVYTPNA--QRDLARLPLRLTWEEHLASYLQDLNSKKPVVYC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H EID+ + K + G GFT ER +F +L
Sbjct: 143 GDLNVAHTEIDLKNA---------------KSNIGNSGFTYEERAKFSELL 178
>gi|417092680|ref|ZP_11957296.1| exodeoxyribonuclease [Streptococcus suis R61]
gi|353532359|gb|EHC02031.1| exodeoxyribonuclease [Streptococcus suis R61]
Length = 275
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 102/240 (42%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + T D D+IA+QE ++ G K H
Sbjct: 1 MKLISWNIDSLNAALTAESPRALLSRAVIDTLVTEDADIIAIQETKLSDKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ + F Y W A YAGT L K P +S
Sbjct: 58 EILESY------------------FPGYANTWRSSVEPARKGYAGTLFLYKNHLTPI-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+ FY+ Y PN G + R+ WD + E++ Q
Sbjct: 99 FPEIGAPTTMDSEGRIITLEFDDFYVTQVYTPNAG--DGLKRLADRQIWDVQYAEYLSQL 156
Query: 212 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
S KP++ GD NV+H+EID+++P N++ PGFT ER+ F +L
Sbjct: 157 DSQKPVLATGDYNVAHKEIDLANP------------ASNRQ---SPGFTDEERQGFTNLL 201
>gi|315652833|ref|ZP_07905807.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
gi|315485035|gb|EFU75443.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
Length = 259
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 100/233 (42%), Gaps = 55/233 (23%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
D K ++WN N L V F +F D D+ +QE ++ +
Sbjct: 7 DMKKMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIE----------- 52
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
L P + +Y W+ A K Y+G A+ K +P V++ +
Sbjct: 53 ---------------LDLPGYYDY---WNYATKKGYSGVAVFTKD--KPINVTYGIGID- 91
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+++ +GRVI AE++ FYL+ Y PN+ + R W+ ++ L+ KP+I
Sbjct: 92 -EHDNEGRVITAEYDEFYLITCYTPNS--QRGLTRLDYRMTWEDAFLDYALKLEEKKPVI 148
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
+CGDLNV+H+EID+ +P K + GFT ER + IL
Sbjct: 149 FCGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKMDIIL 186
>gi|413952189|gb|AFW84838.1| hypothetical protein ZEAMMB73_201373 [Zea mays]
Length = 530
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 106/230 (46%), Gaps = 47/230 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN N L +K+ D DV+ LQE +M K+ + +KD
Sbjct: 270 LKIMSWNVNGLKALLKSRGFSVQQLAQREDFDVLCLQETKM-------QEKDIEVIKD-- 320
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 159
L+ ++ +W+ + SK Y+GTA++ + +P + + L +
Sbjct: 321 --------TLLDGYTNS-------FWTCSVSKLGYSGTAIISR--VKPLSIKYGLGIS-- 361
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
++ +GRV+ EF+ FYLL Y PN+G + ++ R +WD + ++ + KP+I
Sbjct: 362 DHDTEGRVVTVEFDDFYLLTAYVPNSGDGLKRLTY-RVTEWDPSLGNYMKELEKSKPVIL 420
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
GDLN +H+EID+ P N+ GFT ER+ FG
Sbjct: 421 TGDLNCAHQEIDIHDP------------AGNRR---SAGFTNEERESFGT 455
>gi|300811911|ref|ZP_07092372.1| exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300497108|gb|EFK32169.1| exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 275
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 101/246 (41%), Gaps = 62/246 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWP--EFSNFIT----TFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + P E + + DPDV+ALQE ++PA+G K HQ
Sbjct: 1 MRLISWNIDSLNAALTGTSPRAEMTRGVLKNLHDLDPDVLALQETKLPASGPS---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
D F Y W A YAGT L KK P
Sbjct: 58 AALADL------------------FPEYDFVWRSSMEPARKGYAGTMFLYKKGLDPLVTR 99
Query: 152 FSLEKTALKYEP---DGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQ 205
+ EP +GR++ EF FY+ Y PN G N R R++WDK +
Sbjct: 100 PEIGAP----EPMDFEGRILTLEFPDFYVTQVYTPNAG-----NGLVRLGDRQEWDKCYR 150
Query: 206 EFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERK 264
++ + K P++ GD N +++EID+ HP K + GFT ER
Sbjct: 151 AYLEELDKKKPVLASGDFNAAYQEIDLKHP---------------KNNHHSAGFTDEERA 195
Query: 265 RFGAIL 270
FG +L
Sbjct: 196 GFGQLL 201
>gi|198420194|ref|XP_002123983.1| PREDICTED: similar to APEX nuclease (multifunctional DNA repair
enzyme) 1 [Ciona intestinalis]
Length = 337
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 109/240 (45%), Gaps = 47/240 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN + VK + ++ + PD+ LQE + KD P QELKD
Sbjct: 82 LKISSWNVAGVRAWVKKDGVKW---VKGESPDIFTLQETK---CSEKDIP---QELKD-- 130
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 159
K Y + W++A S ++G L K +P +V F +
Sbjct: 131 ------------------LKEYHMSWNVAKSTKGFSGVGLFSK--VKPLEVKFGI--GVE 168
Query: 160 KYEPDGRVILAEFETFYLLNTYAPN--NGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPL 216
+++ +GR I AE++ FYL++TY PN G K + R KW+ ++ KP+
Sbjct: 169 EHDQEGRTITAEYDKFYLVSTYVPNAQRGLKR----LEYRLKWNSDFLAYIKSLDEKKPV 224
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWG---QPGFTIAERKRFGAILKEY 273
+ CGD+NVSH EID+++P+ K G+ ++ Q GFT R + + +Y
Sbjct: 225 VLCGDMNVSHHEIDLANPK--GNKKNAGFSQEERDGMTELLQSGFTDTYRDLYPDLTGQY 282
>gi|413952188|gb|AFW84837.1| hypothetical protein ZEAMMB73_201373 [Zea mays]
Length = 516
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 106/230 (46%), Gaps = 47/230 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN N L +K+ D DV+ LQE +M K+ + +KD
Sbjct: 270 LKIMSWNVNGLKALLKSRGFSVQQLAQREDFDVLCLQETKM-------QEKDIEVIKD-- 320
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 159
L+ ++ +W+ + SK Y+GTA++ + +P + + L +
Sbjct: 321 --------TLLDGYTNS-------FWTCSVSKLGYSGTAIISR--VKPLSIKYGLGIS-- 361
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
++ +GRV+ EF+ FYLL Y PN+G + ++ R +WD + ++ + KP+I
Sbjct: 362 DHDTEGRVVTVEFDDFYLLTAYVPNSGDGLKRLTY-RVTEWDPSLGNYMKELEKSKPVIL 420
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
GDLN +H+EID+ P N+ GFT ER+ FG
Sbjct: 421 TGDLNCAHQEIDIHDP------------AGNRR---SAGFTNEERESFGT 455
>gi|450049676|ref|ZP_21839797.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM1]
gi|449203427|gb|EMC04286.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM1]
Length = 275
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 50/242 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K+ +
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGP--TKKHLR 58
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
LKD F +Y + W A YAGT L K QP ++
Sbjct: 59 ILKD-------------------YFPDYDVVWRSSVEPARKGYAGTMFLYKSNLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DALKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 271 KE 272
++
Sbjct: 202 EQ 203
>gi|257867352|ref|ZP_05647005.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257873685|ref|ZP_05653338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
gi|257801408|gb|EEV30338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257807849|gb|EEV36671.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
Length = 252
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 98/232 (42%), Gaps = 57/232 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N L VK N FS D D LQE ++ + D P HQ
Sbjct: 1 MKFISWNVNGLRAIVKKN---FSEVFEALDADFFCLQETKLQEGQIELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K+ + +E+
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFAKEPALSVRYGLGIEE--- 84
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
++ +GRVI E+ F+L+ Y PN+ + E R W+ ++ + KP+I
Sbjct: 85 -HDTEGRVITLEYPEFFLITCYTPNS--QNELRRLDYRMTWEDAFLAYLTELKQQKPVIL 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
CGDLNV+H+ ID+ + K + GFT ER++F +L
Sbjct: 142 CGDLNVAHKNIDIKNW---------------KTNQKSAGFTPEEREKFSTLL 178
>gi|19745558|ref|NP_606694.1| 3'-exo-deoxyribonuclease [Streptococcus pyogenes MGAS8232]
gi|19747679|gb|AAL97193.1| putative 3'-exo-deoxyribonuclease [Streptococcus pyogenes MGAS8232]
Length = 275
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 103/240 (42%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPT---KKHI 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGTALLVKKCFQPKKVS 151
E AL S F NY +W S A YAGT L K P +
Sbjct: 58 E-----------------ALLSY-FPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPVS-T 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EFE F++ Y PN G + R+ WD + +++ +
Sbjct: 99 FPEIGAPTTMDAEGRIITLEFEDFFVTQVYTPNAG--DGLRRLDDRQIWDHKYADYLTEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 157 DAQKPVLAAGDYNVAHKEIDLANPS------------SNRR---SPGFTDEERQSFTNLL 201
>gi|418070253|ref|ZP_12707528.1| exodeoxyribonuclease III [Lactobacillus rhamnosus R0011]
gi|357539673|gb|EHJ23690.1| exodeoxyribonuclease III [Lactobacillus rhamnosus R0011]
Length = 252
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 105/244 (43%), Gaps = 59/244 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A + D P +Q
Sbjct: 1 MKMISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVELDLPGYYQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--KPLNVTYGM--GIP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WD+ + + + K PL++
Sbjct: 84 EHDTEGRIITLEYPKFYLMTVYTPNSG--GELKRLDYRQQWDRDFLAYTNELAAKKPLVY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--F 276
CGDLNV+HE ID+ + +K + GFT ER F L I F
Sbjct: 142 CGDLNVAHEPIDLKN---------------DKTNHHNAGFTDEERADFTKQLNSGFIDTF 186
Query: 277 LCFY 280
FY
Sbjct: 187 RHFY 190
>gi|317497391|ref|ZP_07955713.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
gi|316895311|gb|EFV17471.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
Length = 250
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 106/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + VK F +F D D+ +QE +M QE + D
Sbjct: 1 MKFISWNVNGIRACVKKG---FLDFFNETDADIFCIQESKM------------QEGQLD- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L+ P + Y W+ A K Y+GT + K+ +P V + L +
Sbjct: 45 -------------LNLPEYHQY---WNYAVKKGYSGTGIFTKE--EPISVFYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ +Y + Y PN+ + E R KW++ ++ + KP+I+C
Sbjct: 85 HDQEGRVITLEFKDYYFITVYTPNS--QSELARLSYRMKWEEDFLAYLKKLEEKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+ EEID+ +P K + GFT ER++ IL I
Sbjct: 143 GDLNVAVEEIDLKNP---------------KTNRKNAGFTDEEREKMRTILNNGFI 183
>gi|281206753|gb|EFA80938.1| hypothetical protein PPL_06173 [Polysphondylium pallidum PN500]
Length = 2081
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 115/250 (46%), Gaps = 49/250 (19%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVR-MPAAGSKDA- 90
+E K++ LK ++WN K F ++ PD++ LQE + +P+ KDA
Sbjct: 1241 AEPEVKENQLKIMSWNVAGFNSCTKKG---FKAYVEQEQPDILCLQETKILPSKVPKDAI 1297
Query: 91 PKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCF-QPKK 149
PK ++ A R K + W+ + LL + K
Sbjct: 1298 PKGYEY---HFSACR---------------KTWIPWY------WVRILLLFDFLLTKVKP 1333
Query: 150 VSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQ---RRRKWDKRIQE 206
+S ++ K++ +GR+I AE+E FYL+NTY PN+G + + R ++WD + +
Sbjct: 1334 ISVTMGMGVGKHDKEGRIITAEYEKFYLVNTYVPNSGVDRKTPLARLDYRTKEWDVDLFK 1393
Query: 207 FVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKR 265
++ + + KP+IW GDLNV+H+EID+ +P K + GFT+ ER
Sbjct: 1394 YMHELNKKKPVIWTGDLNVAHKEIDLKNP---------------KGNVRTAGFTVEERTS 1438
Query: 266 FGAILKEYLI 275
F L+ +
Sbjct: 1439 FSGFLESGFV 1448
>gi|167767320|ref|ZP_02439373.1| hypothetical protein CLOSS21_01839 [Clostridium sp. SS2/1]
gi|429761671|ref|ZP_19294088.1| exodeoxyribonuclease III [Anaerostipes hadrus DSM 3319]
gi|167711295|gb|EDS21874.1| exodeoxyribonuclease III [Clostridium sp. SS2/1]
gi|291559374|emb|CBL38174.1| exodeoxyribonuclease III [butyrate-producing bacterium SSC/2]
gi|429183247|gb|EKY24313.1| exodeoxyribonuclease III [Anaerostipes hadrus DSM 3319]
Length = 250
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 106/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + VK F +F D D+ +QE +M QE + D
Sbjct: 1 MKFISWNVNGIRACVKKG---FLDFFNETDADIFCIQESKM------------QEGQLD- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L+ P + Y W+ A K Y+GT + K+ +P V + L +
Sbjct: 45 -------------LNLPGYHQY---WNYAVKKGYSGTGIFTKE--EPISVFYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ +Y + Y PN+ + E R KW++ ++ + KP+I+C
Sbjct: 85 HDQEGRVITLEFKDYYFITVYTPNS--QSELARLSYRMKWEEDFLAYLKKLEEKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+ EEID+ +P K + GFT ER++ IL I
Sbjct: 143 GDLNVAVEEIDLKNP---------------KTNRKNAGFTDEEREKMRTILSNGFI 183
>gi|355673738|ref|ZP_09059213.1| exodeoxyribonuclease [Clostridium citroniae WAL-17108]
gi|354814451|gb|EHE99051.1| exodeoxyribonuclease [Clostridium citroniae WAL-17108]
Length = 251
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 59/243 (24%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDDT 101
K ++WN N L V F +F D DV +QE ++ + D P HQ
Sbjct: 3 KLISWNVNGLRACVGKG---FLDFFQAVDADVFCIQESKLQEGQIELDLPGYHQ------ 53
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+W+ A K Y+GTA+ ++ +P V++ + +
Sbjct: 54 ------------------------YWNYARKKGYSGTAVFTRE--EPISVAYGIGME--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI AEF +Y++ Y PN+ ++ R KW+ ++ KP+I+C
Sbjct: 86 HDTEGRVITAEFPEYYVVTCYTPNS--QDGLARLDYRMKWEDDFLSYLKGLEKNKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P K + GFT ER +F +L I F
Sbjct: 144 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTDLLSAGFIDTFR 188
Query: 278 CFY 280
FY
Sbjct: 189 YFY 191
>gi|357639304|ref|ZP_09137177.1| exodeoxyribonuclease III [Streptococcus urinalis 2285-97]
gi|357587758|gb|EHJ57166.1| exodeoxyribonuclease III [Streptococcus urinalis 2285-97]
Length = 277
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 48/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P I + DVIA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTAESPRALLSRAVIETIAKENADVIAIQETKLSANG---PTKKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSF 152
E +L+ P + N +W S A YAGT L KK +PK ++F
Sbjct: 58 E-------------VLLSYF--PDYSN--VWRSSVEPARKGYAGTMFLYKKELEPK-ITF 99
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
K + +GR+I EF+ ++ Y PN G + R+ WD++ +E+++
Sbjct: 100 PEIKAPTTMDAEGRIITLEFDNVFITQVYTPNAG--DGLKRLADRQIWDEKYKEYLISLD 157
Query: 213 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP++ GD NV+H+EID+++P N+ GFT ER+ F ++L+
Sbjct: 158 KQKPVLATGDYNVAHKEIDLANP------------ASNRR---SAGFTDEERQGFTSLLE 202
>gi|450046094|ref|ZP_21838754.1| putative exodeoxyribonuclease III [Streptococcus mutans N34]
gi|449199268|gb|EMC00342.1| putative exodeoxyribonuclease III [Streptococcus mutans N34]
Length = 275
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 50/242 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K+ +
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGP--TKKHLR 58
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
LKD F +Y + W A YAGT L K QP ++
Sbjct: 59 ILKD-------------------YFPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYVIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 271 KE 272
++
Sbjct: 202 EQ 203
>gi|331265838|ref|YP_004325468.1| exodeoxyribonuclease III [Streptococcus oralis Uo5]
gi|326682510|emb|CBZ00127.1| exodeoxyribonuclease III [Streptococcus oralis Uo5]
Length = 275
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ E + + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKG---PTKKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ ++ F+ Y+ W A YAGT L KK P +S
Sbjct: 58 EILEEL------------------FQGYENTWRSSQEPARKGYAGTMFLYKKELTPT-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+TF++ Y PN G + R+ WD + E++ +
Sbjct: 99 FPEIGAPSTMDLEGRIITLEFDTFFVTQVYTPNAG--DGLKRLDERQVWDVKYAEYLAEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER F +L
Sbjct: 157 DKEKPVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEERAGFTNLL 201
>gi|418418131|ref|ZP_12991322.1| exodeoxyribonuclease [Streptococcus urinalis FB127-CNA-2]
gi|410869230|gb|EKS17193.1| exodeoxyribonuclease [Streptococcus urinalis FB127-CNA-2]
Length = 308
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 48/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P I + DVIA+QE ++ A G K H
Sbjct: 32 MKLISWNIDSLNAALTAESPRALLSRAVIETIAKENADVIAIQETKLSANG---PTKKHL 88
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSF 152
E +L+ P + N +W S A YAGT L KK +PK ++F
Sbjct: 89 E-------------VLLSYF--PDYSN--VWRSSVEPARKGYAGTMFLYKKELEPK-ITF 130
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
K + +GR+I EF+ ++ Y PN G + R+ WD++ +E+++
Sbjct: 131 PEIKAPTTMDAEGRIITLEFDNVFITQVYTPNAG--DGLKRLADRQIWDEKYKEYLISLD 188
Query: 213 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP++ GD NV+H+EID+++P N+ GFT ER+ F ++L+
Sbjct: 189 KQKPVLATGDYNVAHKEIDLANP------------ASNRR---SAGFTDEERQGFTSLLE 233
>gi|366166303|ref|ZP_09466058.1| exodeoxyribonuclease III [Acetivibrio cellulolyticus CD2]
Length = 251
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN N + + F++F D D+ +QE ++
Sbjct: 2 LKMISWNVNGIRAVMGKG---FTDFFQKEDADIFCIQETKV------------------- 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E I + PF+ Y +W+ A+ K Y+G A+ K +P VS+ + +
Sbjct: 40 ----QEGQIEI------PFEGYYKYWNYAEKKGYSGVAVFTK--IKPITVSYGI--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EF+ +Y++ Y PN+ + R KW+ ++ KP+I C
Sbjct: 86 HDKEGRVITLEFDEYYVVTVYTPNS--QRGLTRLHYRMKWEDDFLSYLKSLERYKPVIVC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+H+EID+ +P+ NK++ GFT ER +F + + I F
Sbjct: 144 GDLNVAHKEIDLKNPQ------------SNKKN---AGFTEEERSKFDSYVNNGFIDTFR 188
Query: 278 CFY 280
FY
Sbjct: 189 YFY 191
>gi|328958150|ref|YP_004375536.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
gi|328674474|gb|AEB30520.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
Length = 253
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 107/243 (44%), Gaps = 57/243 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK F D D LQE ++
Sbjct: 1 MKFISWNVNGLRAIVKKG---FVEIFEELDADFFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L F Y +W+ A+ K Y+GTA+ K +P VS+ + K +
Sbjct: 39 ---QEGQIEL-------DFPGYYDYWNYAEKKGYSGTAIFTKH--KPLDVSYGIGKP--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI + +Y++ Y PN+ K E R +W+ Q ++ + S KP+I C
Sbjct: 85 HDQEGRVITLSYPNYYVVTCYTPNS--KSELKRLDYRMQWEDDFQLYLKKLDSEKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FL 277
GDLNV+HE ID+ + K + GF+ ER +F A+L I F
Sbjct: 143 GDLNVAHENIDLKNW---------------KTNQLSAGFSKEERMKFSALLDAGFIDTFR 187
Query: 278 CFY 280
FY
Sbjct: 188 YFY 190
>gi|406659471|ref|ZP_11067609.1| exodeoxyribonuclease III [Streptococcus iniae 9117]
gi|405577580|gb|EKB51728.1| exodeoxyribonuclease III [Streptococcus iniae 9117]
Length = 275
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 105/241 (43%), Gaps = 48/241 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTAESPRALLSRAVIDTLVAHDADIIAIQETKLSATGPS---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSF 152
E D+ P + N +W S A YAGT L K+ PK VSF
Sbjct: 58 EALDN---------------YFPGYHN--VWRSSIEPARKGYAGTLFLYKENLTPK-VSF 99
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
+ +GR+I EF+ +++ Y PN G + + R+ WD ++++
Sbjct: 100 PEIGAPTTMDSEGRIITLEFDDYFVTQVYTPNAG--DALKRLEDRQAWDIAYANYLVKLD 157
Query: 213 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP++ GD NV+HEEID+++P N+ GFT ER+ F +L
Sbjct: 158 QQKPVLATGDYNVAHEEIDLANP------------ASNRR---SAGFTDEERQGFTNLLS 202
Query: 272 E 272
+
Sbjct: 203 K 203
>gi|377809183|ref|YP_005004404.1| exodeoxyribonuclease III [Pediococcus claussenii ATCC BAA-344]
gi|361055924|gb|AEV94728.1| exodeoxyribonuclease III [Pediococcus claussenii ATCC BAA-344]
Length = 251
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + F + D D +QE +
Sbjct: 1 MKLISWNVNGLRAAVTHG---FEDTFKDLDADFFCVQETK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L + F Y +W+ A+ K Y+GTA+ K +P V++ + +
Sbjct: 38 ---------LQKGQIEIDFPGYYQYWNYAERKGYSGTAIFTKH--KPLNVTYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
Y+ +GR+I E+ +Y++ Y PN+ + + + R W+ + +V Q KP+I+C
Sbjct: 85 YDTEGRIITLEYANYYVITCYTPNS--QPKLKRLEYRMSWEDAFKNYVDQLKKDKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+H EID+ +P K + GF+ ER +F +L+
Sbjct: 143 GDLNVAHNEIDLKNP---------------KTNHKNAGFSDQERAKFTELLQ 179
>gi|300813916|ref|ZP_07094220.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300511979|gb|EFK39175.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 275
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 105/242 (43%), Gaps = 54/242 (22%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFITTF----DPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL L +N + + + DPD+ A+QE ++P G K H+
Sbjct: 1 MKFISWNIDSLNAALTSSSNRAILTRAVLSSIRDEDPDLFAVQETKLPPTG---LSKKHK 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ + F++Y + A YAGT + KK + K
Sbjct: 58 EILE------------------KEFQDYSYVYVTSKEEARKSYAGTMIFYKKDLECKATY 99
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR++ EF+ FY Y PN G + R+ WDK+ E+ +
Sbjct: 100 PEIGAPG-SMDMEGRILTLEFKDFYFSTVYTPNAG--DGLKRLSDRQVWDKKYLEYCQEL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHP--EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
KPL+ CGD NV+H+EID+++P F+A GFT ER F
Sbjct: 157 DKNKPLVLCGDFNVAHKEIDLANPNNNHFSA-----------------GFTDEERMGFTN 199
Query: 269 IL 270
+L
Sbjct: 200 LL 201
>gi|257877428|ref|ZP_05657081.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325568814|ref|ZP_08145107.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
gi|257811594|gb|EEV40414.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325157852|gb|EGC70008.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
Length = 250
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 98/232 (42%), Gaps = 57/232 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N L VK N FS D D LQE ++ + D P HQ
Sbjct: 1 MKFISWNVNGLRAIVKKN---FSEVFEALDADFFCLQETKLQEGQIELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K+ + +E+
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFAKEPALSVRYGLGIEE--- 84
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
++ +GRVI E+ F+L+ Y PN+ + E R W+ ++ + KP+I
Sbjct: 85 -HDTEGRVITLEYPEFFLITCYTPNS--QNELRRLDYRMTWEDAFLAYLTELKQQKPVIL 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
CGDLNV+H+ ID+ + K + GFT ER++F +L
Sbjct: 142 CGDLNVAHKNIDIKNW---------------KTNQKSAGFTPEEREKFSTLL 178
>gi|315452849|ref|YP_004073119.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
gi|315131901|emb|CBY82529.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
Length = 255
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 104/236 (44%), Gaps = 55/236 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ V+WN N L ++ F +F+ D+ +QE +M P
Sbjct: 1 MRLVSWNVNGLRACMQKG---FKDFLLKSGADIFCVQETKMQ-------PDQ-------- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ F+NY +W+ A K Y+G L K + LE+
Sbjct: 43 --------------ADFVFENYHAFWNSAQKKGYSGVLTLSKSAPLDVRYGLGLEE---- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 219
++ +GRVI E+E FYL+N Y PN+ + R +W+ +EF+ S K ++ C
Sbjct: 85 HDTEGRVITCEYEYFYLVNVYTPNS--QRGLLRLPYRLQWESVFREFLQNLASHKEVLIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GDLNV+H EID+++P+ N+ + GF+ ER FG +L+ LI
Sbjct: 143 GDLNVAHTEIDLTNPQ------------SNRYN---AGFSDPERNAFGQLLQLGLI 183
>gi|449944367|ref|ZP_21806724.1| putative exodeoxyribonuclease III [Streptococcus mutans 11A1]
gi|449148594|gb|EMB52451.1| putative exodeoxyribonuclease III [Streptococcus mutans 11A1]
Length = 275
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 50/242 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K+ +
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGP--TKKHLR 58
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
LKD F +Y + W A YAGT L K QP ++
Sbjct: 59 ILKD-------------------YFPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP + PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS---------------SNRCSPGFTDEERAGFTHLL 201
Query: 271 KE 272
++
Sbjct: 202 EQ 203
>gi|422859621|ref|ZP_16906265.1| exodeoxyribonuclease [Streptococcus sanguinis SK330]
gi|327470504|gb|EGF15960.1| exodeoxyribonuclease [Streptococcus sanguinis SK330]
Length = 275
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 103/240 (42%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFITTF----DPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLQAEDADIIAIQETKLSATGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ + F +Y+ W A YAGT L KK P V+
Sbjct: 58 EILTNL------------------FPDYENTWRSSQEPARKGYAGTMFLYKKELTPT-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+ F++ Y PN G + R+ WD + E++
Sbjct: 99 FPEIGAPSTMDVEGRIITLEFDGFFVTQVYTPNAG--DGLKRLDDRQVWDAKYAEYLATL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
G KP++ GD NV+H+EID+++P N+ PGFT ER F +L
Sbjct: 157 DGQKPVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEERAGFTNLL 201
>gi|313887924|ref|ZP_07821603.1| exodeoxyribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312846090|gb|EFR33472.1| exodeoxyribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 275
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 27/201 (13%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +S+ L +N + S I DPD+IA+QE ++P G K H+
Sbjct: 1 MKIISWNIDSINAALTSDSNRAQMSREVLATILREDPDIIAIQETKLPKGGPS---KKHK 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
E+ + A + + S P A YAG KK +P V+F
Sbjct: 58 EILAEMFADYDYVFVS----SEEP----------ARKGYAGNMAFFKKGLEPT-VTFPKI 102
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 214
+ +GR+I EF+ F+L Y PN G E R+ WD++ E++ K
Sbjct: 103 DAPDTMDFEGRIITLEFDDFFLTQVYTPNAGG--ELKRLPLRQIWDEKYGEYLSSLDEIK 160
Query: 215 PLIWCGDLNVSHEEIDVSHPE 235
P+I GD NV+H+EID+++P+
Sbjct: 161 PVIATGDFNVAHKEIDLANPD 181
>gi|238018561|ref|ZP_04598987.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
gi|237865032|gb|EEP66322.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
Length = 251
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 38/194 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + E N D D+ LQE ++
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFN---ELDADIFCLQETKLQPD---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+L P ++ Y W S Y+GTA+ + +P V+ + ++
Sbjct: 42 ----------QISLELPGYEQY--WNSAVKKGYSGTAVFTR--IKPLSVTNGI--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRVI AE++ FYL+ Y PN+ + E + R W+ + ++L+ K P+I CG
Sbjct: 86 DQEGRVITAEYDNFYLVCCYTPNS--QRELARLEYRMAWEDAFRNYLLELDKKKPVILCG 143
Query: 221 DLNVSHEEIDVSHP 234
DLNV+H+EID+ +P
Sbjct: 144 DLNVAHQEIDLKNP 157
>gi|449910115|ref|ZP_21794552.1| putative exodeoxyribonuclease III [Streptococcus mutans OMZ175]
gi|450087652|ref|ZP_21854395.1| putative exodeoxyribonuclease III [Streptococcus mutans NV1996]
gi|450127489|ref|ZP_21868618.1| putative exodeoxyribonuclease III [Streptococcus mutans U2A]
gi|449217560|gb|EMC17602.1| putative exodeoxyribonuclease III [Streptococcus mutans NV1996]
gi|449230690|gb|EMC29939.1| putative exodeoxyribonuclease III [Streptococcus mutans U2A]
gi|449260262|gb|EMC57766.1| putative exodeoxyribonuclease III [Streptococcus mutans OMZ175]
Length = 275
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 50/242 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K+ +
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGP--TKKHLR 58
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
LKD F +Y + W A YAGT L K QP ++
Sbjct: 59 ILKD-------------------YFPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPI-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 271 KE 272
++
Sbjct: 202 EQ 203
>gi|450078845|ref|ZP_21851157.1| putative exodeoxyribonuclease III [Streptococcus mutans N3209]
gi|449209706|gb|EMC10214.1| putative exodeoxyribonuclease III [Streptococcus mutans N3209]
Length = 275
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 50/242 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K+ +
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGP--TKKHLR 58
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
LKD F +Y + W A YAGT L K QP ++
Sbjct: 59 ILKD-------------------YFPDYDVVWRSSVEPARKGYAGTMFLYKSNLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPKIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 271 KE 272
++
Sbjct: 202 EQ 203
>gi|183233999|ref|XP_650532.2| exodeoxyribonuclease III [Entamoeba histolytica HM-1:IMSS]
gi|169801308|gb|EAL45146.2| exodeoxyribonuclease III, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449710475|gb|EMD49542.1| exo-deoxyribonuclease III, putative [Entamoeba histolytica KU27]
Length = 319
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 95/199 (47%), Gaps = 44/199 (22%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
D +K T+N S +K EF I +PD++ +QE ++
Sbjct: 68 DEIKIATYNVASWNAAMKKGLNEF---IKEENPDILCVQETKLQDG-------------- 110
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKT 157
+P Y ++S + +K YAGTA+L K+ +P ++ +K
Sbjct: 111 ----------------VNPMIDGYHCYFSASTAKKGYAGTAILSKE--EPLSIT---KKI 149
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKP 215
K GR+I E+E FYL+N+Y N+G + EN +R +WDK ++E + LQ K
Sbjct: 150 NGKENEHGRIITVEYEKFYLVNSYVMNSG-QRLENLVKRTTEWDKDMREHLKALQ-KKKN 207
Query: 216 LIWCGDLNVSHEEIDVSHP 234
+IWCGDLNV+ IDV+ P
Sbjct: 208 VIWCGDLNVALRWIDVAKP 226
>gi|402835045|ref|ZP_10883630.1| exodeoxyribonuclease III [Selenomonas sp. CM52]
gi|402276400|gb|EJU25510.1| exodeoxyribonuclease III [Selenomonas sp. CM52]
Length = 250
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 55/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L + F D DV +QE +M
Sbjct: 1 MRFVSWNVNGLRACLGKG---FMQSFKALDADVFGVQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ E+ IL Y+ +W+ A+ K Y+GTA+ + +P VS+ L +
Sbjct: 39 ---QPEQAIL-------ELTGYKQYWNSAEKKGYSGTAVFSR--IEPLSVSYGLGIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EF+ Y + Y PN+ E ++ R W++ ++++L K P++ C
Sbjct: 85 HDHEGRVIALEFDDLYFVTVYTPNSQRGLERLAY--RMTWEEAFRDYLLTLDAKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+H EID+ +P K + GFT ER++ +L+
Sbjct: 143 GDLNVAHTEIDLKNP---------------KTNRKNAGFTDEEREKMTELLQ 179
>gi|354558981|ref|ZP_08978234.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
gi|353545305|gb|EHC14757.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
Length = 251
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 44/197 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V F +F + D+ ++QE ++
Sbjct: 1 MKLISWNVNGIRACVNKG---FLDFFNKENADIFSIQETKV------------------- 38
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+EE++ PF+ Y +W+ A K Y+GTA+ KK +P + + +
Sbjct: 39 ---QEEQI---------PFQLEGYYQYWNFAQKKGYSGTAIFSKK--EPLNIRYGI--GI 82
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLI 217
+++ +GRVI EFE FY++ Y PN+ + E + R KW+ ++ KP+I
Sbjct: 83 EEHDQEGRVITLEFEKFYMVTVYTPNS--QRELARLEYRMKWEDDFLHYLRDLEQLKPVI 140
Query: 218 WCGDLNVSHEEIDVSHP 234
+CGDLNV+H+EID+ +P
Sbjct: 141 FCGDLNVAHKEIDLKNP 157
>gi|289423957|ref|ZP_06425750.1| exodeoxyribonuclease III [Peptostreptococcus anaerobius 653-L]
gi|289155734|gb|EFD04406.1| exodeoxyribonuclease III [Peptostreptococcus anaerobius 653-L]
Length = 275
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 103/236 (43%), Gaps = 42/236 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ E I DPD+I LQE ++ G K H
Sbjct: 1 MRLISWNIDSLNAALTSDSARALLSREVLKTIIDLDPDIIGLQETKLSVKG---LTKKHI 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
E+ ++ E + R+ P K Y AGT L KK K VS+
Sbjct: 58 EIIEEMLPDYE---YVYRSSVEPARKGY-----------AGTMFLYKKGMNVK-VSYPEI 102
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 214
+ +GR+I E + Y+ Y PN G + + R+ WD + E++ K
Sbjct: 103 GAPTTMDFEGRIITLELDDCYVTQVYTPNAG--DGLRRLEERQVWDCKYMEYLKTLDEDK 160
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
P++ CGD NV+H EID+++P A+ ++ PGFT ER F +L
Sbjct: 161 PVLACGDYNVAHNEIDLANP---ASNHMS------------PGFTDEERAGFTNLL 201
>gi|153812982|ref|ZP_01965650.1| hypothetical protein RUMOBE_03389 [Ruminococcus obeum ATCC 29174]
gi|149830929|gb|EDM86019.1| exodeoxyribonuclease III [Ruminococcus obeum ATCC 29174]
Length = 252
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 104/244 (42%), Gaps = 59/244 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N + + F + D D+ LQE + + + P HQ
Sbjct: 1 MKCISWNVNGIRACITKG---FEDRFRELDADIFCLQETKCQQGQVELELPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ + Y+GTA+ KK K +E+
Sbjct: 53 -------------------------YWNYANRRGYSGTAVFTKKEPISVKNGIGIEE--- 84
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
++ +GRVI EF+ FY + Y PN+ + E + R +W++ ++L+ KP+I
Sbjct: 85 -HDKEGRVITLEFKEFYFVTVYTPNS--QSELRRLEYRMEWERDFLAYLLKLQESKPVIC 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--F 276
CGDLNV+HEEID+ +P K + GFT ER F +L+ I F
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNRKNAGFTDEERACFTKVLESGFIDTF 186
Query: 277 LCFY 280
FY
Sbjct: 187 RYFY 190
>gi|293365984|ref|ZP_06612686.1| exodeoxyribonuclease [Streptococcus oralis ATCC 35037]
gi|291315527|gb|EFE55978.1| exodeoxyribonuclease [Streptococcus oralis ATCC 35037]
Length = 275
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 104/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ E + + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ ++ F Y+ W A YAGT L KK P +S
Sbjct: 58 EILEEL------------------FPGYENTWRSSQEPARKGYAGTMFLYKKELTPT-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EFE F++ Y PN G + + R+ WD + E++ Q
Sbjct: 99 FPEIGAPSTMDLEGRIITLEFEEFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLAQL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER F +L
Sbjct: 157 DKEKPVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEERAGFTNLL 201
>gi|449437801|ref|XP_004136679.1| PREDICTED: apurinic endonuclease-redox protein-like [Cucumis
sativus]
Length = 501
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 32/195 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K + D DV+ LQE ++
Sbjct: 243 VKILSWNVNGLRALLKGS--SAVELAEREDFDVLCLQETKL------------------- 281
Query: 102 KASREEKLILMRALSSPPFKNYQIW-WSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK 160
+EK IL S +Y W S++ Y+GTA++ + +P V + L + +
Sbjct: 282 ----QEKDILNITKSLVDGYHYTYWTCSVSKLGYSGTAIISR--IKPISVRYGLGIS--E 333
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV++ EF++F+LLN Y PN+G + S+ R +WD + ++ + KP+I
Sbjct: 334 HDGEGRVVMVEFDSFFLLNVYVPNSGDGLKRLSY-RITQWDPSLSNYIKELEKSKPVILT 392
Query: 220 GDLNVSHEEIDVSHP 234
GDLN +H+EID+ +P
Sbjct: 393 GDLNCAHQEIDLYNP 407
>gi|386362202|ref|YP_006071533.1| exodeoxyribonuclease III [Streptococcus pyogenes Alab49]
gi|350276611|gb|AEQ23979.1| exodeoxyribonuclease III [Streptococcus pyogenes Alab49]
Length = 275
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 103/240 (42%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + D D+IA+QE ++ A G
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGP-------- 52
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGTALLVKKCFQPKKVS 151
TK E L F NY +W S A YAGT L K P ++
Sbjct: 53 -----TKKHIETLL--------SYFPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPV-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EFE F++ Y PN G + R+ WD + +++ +
Sbjct: 99 FPEIGAPTTMDAEGRIITLEFEDFFVTQVYTPNAG--DGLRRLDDRQIWDHKYADYLTEL 156
Query: 212 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
+ KP++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 157 DTQKPVLATGDYNVAHKEIDLANPS------------SNRR---SPGFTDEERQGFTNLL 201
>gi|397650247|ref|YP_006490774.1| exodeoxyribonuclease III [Streptococcus mutans GS-5]
gi|449886258|ref|ZP_21786082.1| putative exodeoxyribonuclease III [Streptococcus mutans SA41]
gi|449899435|ref|ZP_21791014.1| putative exodeoxyribonuclease III [Streptococcus mutans R221]
gi|449902334|ref|ZP_21791521.1| putative exodeoxyribonuclease III [Streptococcus mutans M230]
gi|449914622|ref|ZP_21795690.1| putative exodeoxyribonuclease III [Streptococcus mutans 15JP3]
gi|449918470|ref|ZP_21797358.1| putative exodeoxyribonuclease III [Streptococcus mutans 1SM1]
gi|449924021|ref|ZP_21799361.1| putative exodeoxyribonuclease III [Streptococcus mutans 4SM1]
gi|449932133|ref|ZP_21802696.1| putative exodeoxyribonuclease III [Streptococcus mutans 3SN1]
gi|449936390|ref|ZP_21803954.1| putative exodeoxyribonuclease III [Streptococcus mutans 2ST1]
gi|449965327|ref|ZP_21811828.1| putative exodeoxyribonuclease III [Streptococcus mutans 15VF2]
gi|449974218|ref|ZP_21815156.1| putative exodeoxyribonuclease III [Streptococcus mutans 11VS1]
gi|449990606|ref|ZP_21821643.1| putative exodeoxyribonuclease III [Streptococcus mutans NVAB]
gi|449995318|ref|ZP_21822938.1| putative exodeoxyribonuclease III [Streptococcus mutans A9]
gi|450009909|ref|ZP_21828413.1| putative exodeoxyribonuclease III [Streptococcus mutans A19]
gi|450024674|ref|ZP_21831354.1| putative exodeoxyribonuclease III [Streptococcus mutans U138]
gi|450039059|ref|ZP_21836028.1| putative exodeoxyribonuclease III [Streptococcus mutans T4]
gi|450066012|ref|ZP_21845736.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML9]
gi|450074617|ref|ZP_21849401.1| putative exodeoxyribonuclease III [Streptococcus mutans M2A]
gi|450104975|ref|ZP_21859579.1| putative exodeoxyribonuclease III [Streptococcus mutans SF14]
gi|450112046|ref|ZP_21863021.1| putative exodeoxyribonuclease III [Streptococcus mutans SM6]
gi|450114997|ref|ZP_21863656.1| putative exodeoxyribonuclease III [Streptococcus mutans ST1]
gi|450121162|ref|ZP_21866165.1| putative exodeoxyribonuclease III [Streptococcus mutans ST6]
gi|450155950|ref|ZP_21878557.1| putative exodeoxyribonuclease III [Streptococcus mutans 21]
gi|450175808|ref|ZP_21885407.1| putative exodeoxyribonuclease III [Streptococcus mutans SM1]
gi|450181071|ref|ZP_21887604.1| putative exodeoxyribonuclease III [Streptococcus mutans 24]
gi|392603816|gb|AFM81980.1| exodeoxyribonuclease III [Streptococcus mutans GS-5]
gi|449157725|gb|EMB61160.1| putative exodeoxyribonuclease III [Streptococcus mutans 15JP3]
gi|449160314|gb|EMB63587.1| putative exodeoxyribonuclease III [Streptococcus mutans 1SM1]
gi|449161746|gb|EMB64920.1| putative exodeoxyribonuclease III [Streptococcus mutans 3SN1]
gi|449163318|gb|EMB66426.1| putative exodeoxyribonuclease III [Streptococcus mutans 4SM1]
gi|449165605|gb|EMB68595.1| putative exodeoxyribonuclease III [Streptococcus mutans 2ST1]
gi|449171324|gb|EMB73989.1| putative exodeoxyribonuclease III [Streptococcus mutans 15VF2]
gi|449178594|gb|EMB80847.1| putative exodeoxyribonuclease III [Streptococcus mutans 11VS1]
gi|449181544|gb|EMB83625.1| putative exodeoxyribonuclease III [Streptococcus mutans NVAB]
gi|449184613|gb|EMB86546.1| putative exodeoxyribonuclease III [Streptococcus mutans A9]
gi|449190538|gb|EMB92100.1| putative exodeoxyribonuclease III [Streptococcus mutans A19]
gi|449191723|gb|EMB93189.1| putative exodeoxyribonuclease III [Streptococcus mutans U138]
gi|449200715|gb|EMC01736.1| putative exodeoxyribonuclease III [Streptococcus mutans T4]
gi|449208906|gb|EMC09462.1| putative exodeoxyribonuclease III [Streptococcus mutans M2A]
gi|449209331|gb|EMC09860.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML9]
gi|449222800|gb|EMC22515.1| putative exodeoxyribonuclease III [Streptococcus mutans SM6]
gi|449225195|gb|EMC24806.1| putative exodeoxyribonuclease III [Streptococcus mutans SF14]
gi|449228466|gb|EMC27831.1| putative exodeoxyribonuclease III [Streptococcus mutans ST1]
gi|449229432|gb|EMC28746.1| putative exodeoxyribonuclease III [Streptococcus mutans ST6]
gi|449236512|gb|EMC35427.1| putative exodeoxyribonuclease III [Streptococcus mutans 21]
gi|449246186|gb|EMC44498.1| putative exodeoxyribonuclease III [Streptococcus mutans SM1]
gi|449247359|gb|EMC45642.1| putative exodeoxyribonuclease III [Streptococcus mutans 24]
gi|449254437|gb|EMC52345.1| putative exodeoxyribonuclease III [Streptococcus mutans SA41]
gi|449258366|gb|EMC55948.1| putative exodeoxyribonuclease III [Streptococcus mutans R221]
gi|449262860|gb|EMC60299.1| putative exodeoxyribonuclease III [Streptococcus mutans M230]
Length = 275
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 50/242 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K+ +
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGP--TKKHLR 58
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
LKD F +Y + W A YAGT L K QP ++
Sbjct: 59 ILKD-------------------YFPDYDVVWRSSVEPARKGYAGTMFLYKSNLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 271 KE 272
++
Sbjct: 202 EQ 203
>gi|160947302|ref|ZP_02094469.1| hypothetical protein PEPMIC_01235 [Parvimonas micra ATCC 33270]
gi|343520435|ref|ZP_08757404.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
gi|158446436|gb|EDP23431.1| exodeoxyribonuclease III [Parvimonas micra ATCC 33270]
gi|343397393|gb|EGV09927.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
Length = 250
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 108/231 (46%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++F++WN N L +K + ++ N I + D LQE++M
Sbjct: 1 MRFISWNVNGLRACIKKGFLDYFNEI---NADFFCLQEIKMS------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
E +L L + Y+ +++ A K Y+GTA+ K F+P V + + +
Sbjct: 40 ----EGQLDL-------ELEGYETFYNYAQRKGYSGTAIFTK--FKPLSVKYGMGME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I E++ F+L+ Y PN+ K+E R W+ + ++L + K +I C
Sbjct: 85 HDNEGRLITLEYDDFFLVTCYTPNS--KQELLRLDYRMVWEDAFRNYLLDLNKTKSVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+EID+ +P K + GFT ER++ +L
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKMSILL 178
>gi|420535388|ref|ZP_15033733.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|420539073|ref|ZP_15037392.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
gi|393139673|gb|EJC40047.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|393146758|gb|EJC47083.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
Length = 236
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 25/165 (15%)
Query: 120 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 178
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+
Sbjct: 33 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGID--IKEHDKEGRVVTCEFESFYLV 88
Query: 179 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 237
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 89 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 143
Query: 238 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FLCFY 280
K + GF+ ER++F +L I F FY
Sbjct: 144 ------------KTNRKNAGFSDEEREKFNELLNAGFIDTFRYFY 176
>gi|393911285|gb|EFO27125.2| exodeoxyribonuclease III [Loa loa]
Length = 313
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 54/233 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN L +K + + + +PD++ALQE + + P EL++
Sbjct: 58 IKIISWNVAGLRAWIK---KDGHSILVKENPDIVALQETKCV-----EVP---NELQNGY 106
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE---KTA 158
Y + S + G LL K+ +P KV+++ + K+
Sbjct: 107 ---------------------YSFLNTSEKSGHGGVLLLTKE--EPIKVTYTFDDKSKSG 143
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
L GR+I+AE+E +YL+N Y PN+G + +R+ WD F+ + KP++
Sbjct: 144 LDGNGKGRIIIAEYENYYLINAYVPNSG--RGLVNLDKRKFWDDCYFSFIKKLDLNKPIV 201
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
+ GDLNV+H+EID+++P+ NK GFT ER F +L
Sbjct: 202 YVGDLNVAHQEIDLANPK----------TNYNK----TAGFTDQERNDFTRLL 240
>gi|15674547|ref|NP_268721.1| 3'-exo-deoxyribonuclease [Streptococcus pyogenes SF370]
gi|410680027|ref|YP_006932429.1| exodeoxyribonuclease III [Streptococcus pyogenes A20]
gi|13621652|gb|AAK33442.1| putative 3'-exo-deoxyribonuclease [Streptococcus pyogenes M1 GAS]
gi|395453401|dbj|BAM29740.1| exodeoxyribonuclease III [Streptococcus pyogenes M1 476]
gi|409692616|gb|AFV37476.1| exodeoxyribonuclease III [Streptococcus pyogenes A20]
Length = 275
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 102/240 (42%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + D D+IA+QE ++ A G
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGP-------- 52
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGTALLVKKCFQPKKVS 151
TK E L F NY +W S A YAGT L K P ++
Sbjct: 53 -----TKKHIETLLSY--------FPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPV-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EFE F++ Y PN G + R+ WD + +++ +
Sbjct: 99 FPEIGAPTTMDAEGRIITLEFEDFFVTQVYTPNAG--DGLRRLDDRQIWDHKYADYLTEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 157 DAQKPVLATGDYNVAHKEIDLANPN------------SNRR---SPGFTDEERQGFTNLL 201
>gi|421766656|ref|ZP_16203426.1| Exodeoxyribonuclease III [Lactococcus garvieae DCC43]
gi|407624943|gb|EKF51674.1| Exodeoxyribonuclease III [Lactococcus garvieae DCC43]
Length = 286
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 106/236 (44%), Gaps = 40/236 (16%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFD------PDVIALQEVRMPAAGSKDAPKNHQE 96
KF++WN +SL + P + I + DVIA+QE ++ + D K ++
Sbjct: 4 KFISWNIDSLNAALTGTSPRAALSIAVVEQLASSEADVIAIQETKL----NGDLKKTNKV 59
Query: 97 LKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEK 156
L +T AS + ++ +S+PP A Y+GT L K ++
Sbjct: 60 L--ETLASHFPEYKMVHRISTPP----------ARKGYSGTMFLYKNSLPEPIITLPEIG 107
Query: 157 TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKP 215
+ +GR+I EF F++ Y PN G + + R +WD + + ++ KP
Sbjct: 108 APDTMDSEGRIITLEFPEFFVTTVYTPNAG--DTLSRLDLRGQWDDQYRAYLQMLDLQKP 165
Query: 216 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
++ CGD N ++ EID+++P K + GFT ER++FG +L+
Sbjct: 166 VLACGDFNAAYTEIDLANP---------------KGNRNSAGFTDQEREKFGLLLE 206
>gi|306827920|ref|ZP_07461187.1| exodeoxyribonuclease III [Streptococcus pyogenes ATCC 10782]
gi|304429839|gb|EFM32881.1| exodeoxyribonuclease III [Streptococcus pyogenes ATCC 10782]
Length = 275
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 103/240 (42%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + D D+IA+QE ++ A G
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGP-------- 52
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGTALLVKKCFQPKKVS 151
TK E L F NY +W S A YAGT L K P ++
Sbjct: 53 -----TKKHIETLL--------SYFPNYLHVWRSSVEPARKGYAGTMFLYKSTLNPV-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EFE F++ Y PN G + R+ WD + +++ +
Sbjct: 99 FPEIGAPTTMDAEGRIITLEFEDFFVTQVYTPNAG--DGLRRLDDRQIWDHKYADYLTEL 156
Query: 212 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
+ KP++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 157 DTQKPVLATGDYNVAHKEIDLANPS------------SNRR---SPGFTDEERQGFTNLL 201
>gi|417857434|ref|ZP_12502493.1| exodeoxyribonuclease III [Streptococcus pyogenes HKU QMH11M0907901]
gi|387934389|gb|EIK42502.1| exodeoxyribonuclease III [Streptococcus pyogenes HKU QMH11M0907901]
Length = 275
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 102/240 (42%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + D D+IA+QE ++ A G
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGP-------- 52
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGTALLVKKCFQPKKVS 151
TK E L F NY +W S A YAGT L K P ++
Sbjct: 53 -----TKKHIETLL--------SYFPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPV-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EFE F++ Y PN G + R+ WD + +++ +
Sbjct: 99 FPEIGAPTTMDAEGRIITLEFEDFFVTQVYTPNAG--DGLRRLDDRQIWDHKYADYLTEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 157 DAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SPGFTDEERQGFTNLL 201
>gi|449016247|dbj|BAM79649.1| similar to DNA-(apurinic or apyrimidinic site) lyase ARP
[Cyanidioschyzon merolae strain 10D]
Length = 411
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 115/271 (42%), Gaps = 52/271 (19%)
Query: 17 PALSPSKKDGETTETSSEENS--KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDV 74
PA S + + T + E S L+ VTWN S ++ ++ +PD+
Sbjct: 31 PATGTSTQSTQVTPALTSERSVTSSRQLRLVTWNVASY----RSASTALLKYVHEANPDI 86
Query: 75 IALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWW-SLADSK 133
I LQE ++ +A+ L+ P Y+ W+ S A
Sbjct: 87 ICLQETKL-------------------QANATPGPFLL------PQYRYKTWFCSTARKG 121
Query: 134 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 193
Y+GTA+L K +P+ V + +++ +GR I+ E+ L+N Y PN+G + E
Sbjct: 122 YSGTAVLSK--LKPQSVHRGIPGHP-EHDAEGRCIVYEYPDLVLVNVYVPNSGLRSCERL 178
Query: 194 FQRRRKWDKRIQEFVLQCSG--KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKE 251
R ++WD +++++ Q + + +I CGD+NV+ ++ DV E
Sbjct: 179 AYRVQEWDSALRDYLRQLAATRRSIILCGDMNVALDDRDVYSVEACR------------- 225
Query: 252 DWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
G GFT ER+ F L E + F L
Sbjct: 226 --GCAGFTSDERESFRRTLSEAGLVDAFMAL 254
>gi|372324144|ref|ZP_09518733.1| Exodeoxyribonuclease III [Oenococcus kitaharae DSM 17330]
gi|366982952|gb|EHN58351.1| Exodeoxyribonuclease III [Oenococcus kitaharae DSM 17330]
Length = 274
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 103/237 (43%), Gaps = 43/237 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ F++WN +SL +++ P + I PD ++QE ++P G K Q
Sbjct: 1 MNFISWNIDSLNAAIEHKSPRGELTFALLSQIAAQKPDFFSIQESKLPVTGLN--AKQTQ 58
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
L D +R S+PP A YAG L K+ QP +
Sbjct: 59 VLNDLFPG----YCTFVRN-STPP----------AKKGYAGVITLAKE--QPISFNCPTI 101
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 214
+ +GR+IL E+ FYLLN Y PN+G + + R WD + +V Q + K
Sbjct: 102 DAPDTMDEEGRIILLEYPDFYLLNVYTPNSG--DGLKRLEMRGLWDDNFRVYVSQLAERK 159
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
+I+ GDLNV+HEEID+ +P + GFT ER +F +L+
Sbjct: 160 AVIFSGDLNVAHEEIDLKNP---------------STNHQSAGFTDQERDKFTQLLE 201
>gi|357050363|ref|ZP_09111563.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
gi|355381448|gb|EHG28572.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
Length = 250
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 97/231 (41%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK N F TFD D LQE ++ A +
Sbjct: 1 MKFISWNVNGLRAIVKKN---FLEAFETFDADFFCLQETKLQAGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K+ +E+
Sbjct: 45 -------------LDLPGYTQY---WNYAEKKGYSGTAIFAKEPALAAHYGIGIEE---- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI E+ F+L+ Y PN + E R W+ + ++ KP+I C
Sbjct: 85 HDAEGRVITLEYPEFFLVTCYTPNA--QNELRRLDYRMTWEDAFRAYLTDLKQQKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H+ ID+ + K + GFT ER++F +L
Sbjct: 143 GDLNVAHQNIDLKNW---------------KTNQKNAGFTPEEREKFSTLL 178
>gi|312067871|ref|XP_003136947.1| exodeoxyribonuclease III family protein [Loa loa]
Length = 306
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 54/233 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN L +K + + + +PD++ALQE + + P EL++
Sbjct: 51 IKIISWNVAGLRAWIK---KDGHSILVKENPDIVALQETKCV-----EVP---NELQNGY 99
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE---KTA 158
Y + S + G LL K+ +P KV+++ + K+
Sbjct: 100 ---------------------YSFLNTSEKSGHGGVLLLTKE--EPIKVTYTFDDKSKSG 136
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
L GR+I+AE+E +YL+N Y PN+G + +R+ WD F+ + KP++
Sbjct: 137 LDGNGKGRIIIAEYENYYLINAYVPNSG--RGLVNLDKRKFWDDCYFSFIKKLDLNKPIV 194
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
+ GDLNV+H+EID+++P+ NK GFT ER F +L
Sbjct: 195 YVGDLNVAHQEIDLANPK----------TNYNK----TAGFTDQERNDFTRLL 233
>gi|429735837|ref|ZP_19269760.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429156761|gb|EKX99382.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 250
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 99/230 (43%), Gaps = 53/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F + D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELNADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + +P VS+ + ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--LKPLSVSYGIGIE--EH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI EFE YL+ Y PN+ K R W+ + F+L KP++ CG
Sbjct: 86 DNEGRVITMEFEDVYLVTVYTPNS--KNGLLRLDYRMVWEDAFRAFLLDLRAKKPVVVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+H EID+ +P K + GFT ER +F +L
Sbjct: 144 DLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELL 178
>gi|402584375|gb|EJW78317.1| exodeoxyribonuclease III [Wuchereria bancrofti]
Length = 314
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 56/234 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN L +K + + + +PD++ALQE + + P Q
Sbjct: 59 IKIISWNVAGLRALIKKSG---HSVLVEENPDIVALQETKCV-----EVPNELQN----- 105
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLE---KT 157
Y + + ++ S + G LL K+ +P KV+++ + K
Sbjct: 106 --------------------GYHTFLNASEKSGHGGVLLLTKE--EPIKVAYTFDDKSKC 143
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPL 216
+ GR+I+AE+E++YL+N Y PN+G + +R+ WD F+ + KP+
Sbjct: 144 VVDGNGKGRIIIAEYESYYLINAYVPNSG--RGLVNLDKRKIWDDYYLTFIKKLDLSKPV 201
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
++ GDLNV+H+EID+++P+ NK GFT ER F +L
Sbjct: 202 VYVGDLNVAHQEIDLANPK----------TNRNK----TAGFTDQERNDFTRLL 241
>gi|401684405|ref|ZP_10816284.1| exodeoxyribonuclease III [Streptococcus sp. BS35b]
gi|400185649|gb|EJO19875.1| exodeoxyribonuclease III [Streptococcus sp. BS35b]
Length = 275
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ E + + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ ++ F Y+ W A YAGT L KK P +S
Sbjct: 58 EILEEL------------------FPGYENTWRSSQEPARKGYAGTMFLYKKELTPT-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+TF++ Y PN G + + R+ WD + E++ +
Sbjct: 99 FPEIGAPSTMDLEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLAEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER F +L
Sbjct: 157 DKEKPVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEERAGFTNLL 201
>gi|406893678|gb|EKD38677.1| hypothetical protein ACD_75C00647G0002 [uncultured bacterium]
Length = 500
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 39/213 (18%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQE 96
+K+ +K ++WN N + K F++ + TFD DV+ALQE ++ +
Sbjct: 223 TKEHVMKCISWNVNGIRAVAKKG---FADQLRTFDADVVALQETKI----------QEDQ 269
Query: 97 LKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE 155
L D+ K Y +W A+ K Y+G A + P V + L
Sbjct: 270 LTDELKN----------------IPGYTSYWHCAERKGYSGVAFYTR--IPPVAVRYGLG 311
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 214
+++ +GRV+ EF YL+N Y PN+ E+ + +++ R+ + + K
Sbjct: 312 DP--EFDCEGRVLTLEFADCYLINIYFPNSA--EKLVRLAHKLRFNDRLLGYARELEQKK 367
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 247
P+I CGD NV+H+EID+ +P+ K G+ P
Sbjct: 368 PVILCGDFNVAHKEIDLKNPK--TNVKNAGFTP 398
>gi|260887970|ref|ZP_05899233.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|330838548|ref|YP_004413128.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|260862221|gb|EEX76721.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|329746312|gb|AEB99668.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
Length = 250
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 103/231 (44%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L + F D DV +QE +M
Sbjct: 1 MRFVSWNVNGLRACLGKG---FMQSFKALDADVFGVQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ E+ IL Y+ +W+ A+ K Y+GTA+ + +P VS+ L +
Sbjct: 39 ---QPEQAIL-------ELTGYKQYWNSAEKKGYSGTAVFSR--IEPLSVSYGLGIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EF+ Y + Y PN+ E ++ R W++ ++++L K P++ C
Sbjct: 85 HDHEGRVIALEFDDLYFVTVYTPNSQRGLERLAY--RMTWEEAFRDYLLALDAKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H EID+ +P K + GFT ER++ +L
Sbjct: 143 GDLNVAHTEIDLKNP---------------KTNRKNAGFTDEEREKMTELL 178
>gi|381395703|ref|ZP_09921398.1| exodeoxyribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379328582|dbj|GAB56531.1| exodeoxyribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 255
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 95/196 (48%), Gaps = 37/196 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK +F + D DV+ LQE T
Sbjct: 1 MKLVSWNVNGIRAAVKK---DFLQSLAAMDCDVLCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA E+ ++ AL Y I+ + A K Y+GT+++ + +P V+ + + +
Sbjct: 37 KAQDEQ---VIEALCD--LHGYHIFTNSAVKKGYSGTSVITR--VEPIDVTKDIGIS--E 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRV+ AEF FYL+ Y PN+G E R +WD ++ KP++ C
Sbjct: 88 HDQEGRVLCAEFSDFYLVTVYTPNSG--SELKRLGYRGQWDADFLTYIKALEAKKPVVIC 145
Query: 220 GDLNVSHEEIDVSHPE 235
GDLN +H+++D++ P+
Sbjct: 146 GDLNAAHKDLDLARPK 161
>gi|281417190|ref|ZP_06248210.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
gi|281408592|gb|EFB38850.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
Length = 251
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 107/242 (44%), Gaps = 57/242 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L + F ++ D D+ +QE SK P EL+ D
Sbjct: 3 KLISWNVNGLRACINKG---FLDYFKKADADIFCIQE-------SKVQP-GQIELELD-- 49
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
Y +W+ A+ K Y+GTA+ + +P V + ++
Sbjct: 50 -------------------GYHQYWNYAERKGYSGTAVFTR--IKPLYVQNGIGID--EH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRVI EF+ +YL+N Y PN K+E R KW+ + +++ K P+I CG
Sbjct: 87 DREGRVITLEFDNYYLVNVYTPNA--KKELERLDYRMKWEDDFRNYLVGLKAKKPVIVCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FLC 278
D+NV+H+EID+ +PE N+ GFT ER +F +L I F
Sbjct: 145 DMNVAHKEIDLKNPE------------SNRR---SAGFTDEERAKFTELLNAGFIDTFRF 189
Query: 279 FY 280
FY
Sbjct: 190 FY 191
>gi|261880757|ref|ZP_06007184.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
gi|270332533|gb|EFA43319.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
Length = 267
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 106/248 (42%), Gaps = 62/248 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITT--------FDPDVIALQEVRMPAAGSKDAPKN 93
+KFV+WN N L VK N I+ D D LQE +M AG D
Sbjct: 1 MKFVSWNVNGLRACVKPKVDAEGNVISKGFEAYFNELDADFFCLQETKM-QAGQLDLQ-- 57
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
F Y+ +W+ A+ K Y+GTA+ K +P V+
Sbjct: 58 --------------------------FNGYRSYWNYAERKGYSGTAIYTKH--EPMNVAC 89
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG----WKEEENSFQRRRKWDKRIQEFV 208
+ +++ +GRVI E+ FYL+N Y PN+ + + R KW++ + ++
Sbjct: 90 GM--GIEEHDNEGRVITLEYPEFYLVNVYTPNSQESLPGEVKPKRLGYRMKWEEDFRAYI 147
Query: 209 LQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
+ + KP+I CGDLNV+H+EID+ + K + GFT ER++
Sbjct: 148 KRLNETKPVIVCGDLNVAHQEIDIKNA---------------KTNRNNAGFTDEEREKMT 192
Query: 268 AILKEYLI 275
+L I
Sbjct: 193 ILLDNGFI 200
>gi|435851875|ref|YP_007313461.1| exodeoxyribonuclease III [Methanomethylovorans hollandica DSM
15978]
gi|433662505|gb|AGB49931.1| exodeoxyribonuclease III [Methanomethylovorans hollandica DSM
15978]
Length = 252
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 97/206 (47%), Gaps = 38/206 (18%)
Query: 44 FVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKA 103
++WN N L K F T PD++ LQE TKA
Sbjct: 1 MLSWNVNGLRAAYKKG---FMEIFTAHGPDILCLQE---------------------TKA 36
Query: 104 SREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYE 162
E+ +R + Y+ ++S A+ K Y+G L K+ +P +V + L K K++
Sbjct: 37 QEEQLPSALRHVDG-----YKAYFSSAEKKGYSGVGLYTKQ--EPLEVRYELGKA--KFD 87
Query: 163 PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF-VLQCSGKPLIWCGD 221
+GRVI ++F F L N Y PN +E F + +D + L+ GK +I CGD
Sbjct: 88 TEGRVIASDFGDFILFNVYFPNGKASKERLDF-KMEFYDAFLDHLDALKAQGKKIIICGD 146
Query: 222 LNVSHEEIDVSHPEFFAAAKLNGYVP 247
+N +H+EID++ P+ K++G++P
Sbjct: 147 VNTAHKEIDLARPK--ENEKVSGFLP 170
>gi|365904744|ref|ZP_09442503.1| Exodeoxyribonuclease III [Lactobacillus versmoldensis KCTC 3814]
Length = 253
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 99/231 (42%), Gaps = 55/231 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+K ++WN N L VK+ +F + D D+ ++QE ++ D P HQ
Sbjct: 1 MKLISWNVNGLRAVVKH---DFKDTFEKLDADIFSIQETKLQEGQIDLDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ AD K Y+GTA+ K+ +P + L+
Sbjct: 53 -------------------------YFNYADRKGYSGTAVFSKQ--EPLNIETGLDDDEF 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWC 219
+E GR I E+ FYL+N+Y PN+ K + F R D + KP+I C
Sbjct: 86 NHE--GRTITLEYPDFYLINSYTPNSQPKLKRLDF-RMGYNDAMWKHMQTLSKKKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
GDLNV+H EID+ + +K + PGF+ ER +F +L
Sbjct: 143 GDLNVAHNEIDIKN---------------DKTNHKNPGFSDEERNKFSELL 178
>gi|297739882|emb|CBI30064.3| unnamed protein product [Vitis vinifera]
Length = 542
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 34/197 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K+ D DV++LQE ++ QE KD
Sbjct: 282 VKLMSWNVNGLRGLLKSKGFSALKLAQREDFDVLSLQETKL------------QE-KD-- 326
Query: 102 KASREEKLILMRALSSPPFKNYQ-IWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTA 158
+ A+ + Y+ +W+ + SK Y+GTA++ + +P V + L +
Sbjct: 327 ----------VEAIKQSVIEGYENSFWTCSVSKLGYSGTAIISR--IKPLSVRYGLGIS- 373
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
++ +GR++ AEFE+FYLL+ Y PN+G + S+ R +WD + ++ + KP+I
Sbjct: 374 -DHDSEGRLLTAEFESFYLLSGYVPNSGDGLKRLSY-RVTQWDSALGSYMKELEKSKPVI 431
Query: 218 WCGDLNVSHEEIDVSHP 234
GDLN +H+EID+ P
Sbjct: 432 LTGDLNCAHQEIDIHDP 448
>gi|357059246|ref|ZP_09120090.1| exodeoxyribonuclease III [Selenomonas infelix ATCC 43532]
gi|355372575|gb|EHG19915.1| exodeoxyribonuclease III [Selenomonas infelix ATCC 43532]
Length = 250
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 98/230 (42%), Gaps = 53/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + +P V++ + ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--IRPLSVNYGIGTP--EH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI EF YL+ Y PN+ K R W+ + F+L KP++ CG
Sbjct: 86 DHEGRVITMEFADVYLVTVYTPNS--KNALARLDYRMVWEDAFRAFLLDLRAKKPVVVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+H EID+ +P K + GFT ER +F +L
Sbjct: 144 DLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELL 178
>gi|42519716|ref|NP_965646.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
gi|41584005|gb|AAS09612.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
Length = 261
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 57/237 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+KF++WN N L +++ F N T D D+ +Q+ R+ P D P +Q
Sbjct: 8 MKFMSWNVNGLRAALRHG---FVNTFTDLDADIFGIQDTRVEPNEVKIDLPGYYQ----- 59
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K YAGTA+ K+ K ++ +
Sbjct: 60 -------------------------YWNYAERKGYAGTAVFTKE----KPITVANGFGVP 90
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+ + +GR I EF FY +N P +G K + F R W + + +V + KP+I
Sbjct: 91 EVDGEGRSITLEFSNFYFINVQVPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVII 148
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD++V+HE ID++ P+ ++ +PGFT ERK F +L I
Sbjct: 149 GGDMSVAHERIDLAEPD---------------DNHHRPGFTGIERKEFSELLNAGFI 190
>gi|333398435|ref|ZP_08480248.1| exodeoxyribonuclease III [Leuconostoc gelidum KCTC 3527]
gi|406600282|ref|YP_006745628.1| exodeoxyribonuclease III [Leuconostoc gelidum JB7]
gi|406371817|gb|AFS40742.1| exodeoxyribonuclease III [Leuconostoc gelidum JB7]
Length = 272
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 51/239 (21%)
Query: 42 LKFVTWNANSLLLRVKN-------NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
++ ++WN +S+ V++ W + I PDV A+QE ++ A G
Sbjct: 1 MQLISWNIDSINAAVEHKSARGEMTWDVLTT-IAARKPDVFAIQETKLKATGM------- 52
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWW--SLADSKYAGTALLVKKCFQPKKVSF 152
TK E L F +Y ++ S A S Y+GT +L + +P + F
Sbjct: 53 ------TKKQSEAIAEL--------FPDYHVYLDSSTARSGYSGTMMLTR--IEPLSIEF 96
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
+ +GR+I EF+ +Y+ Y PN+G R +WD + ++
Sbjct: 97 PKIAAPDTMDIEGRIITLEFDNYYVSTVYTPNSG--SALARLSARGEWDDAYRAYIQTLD 154
Query: 213 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I+ GD+NV+HEEID+ + K + GFT ER++F A+L
Sbjct: 155 AKKPVIFSGDMNVAHEEIDLKNF---------------KTNHNSAGFTNQEREKFTALL 198
>gi|294794491|ref|ZP_06759627.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
gi|294454821|gb|EFG23194.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
Length = 251
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 38/196 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + E N D D+ LQE ++
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFN---ELDADIFCLQETKLQPD---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+L P ++ Y W S Y+GTA+ + +P V+ + ++
Sbjct: 42 ----------QISLELPGYEQY--WNSAVKKGYSGTAVFTR--IKPLSVTNGI--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRVI AE++ FYL+ Y PN+ + E R W+ + ++L+ K P+I CG
Sbjct: 86 DQEGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMTWEDAFRNYLLELDKKKPVILCG 143
Query: 221 DLNVSHEEIDVSHPEF 236
DLNV+H+EID+ +P+
Sbjct: 144 DLNVAHQEIDLKNPKM 159
>gi|417838206|ref|ZP_12484444.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
gi|338761749|gb|EGP13018.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
Length = 254
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 57/237 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+KF++WN N L +++ F N T D D+ +Q+ R+ P D P +Q
Sbjct: 1 MKFMSWNVNGLRAALRHG---FVNTFTDLDADIFGIQDTRVEPNEVKIDLPGYYQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K YAGTA+ K+ K ++ +
Sbjct: 53 -------------------------YWNYAERKGYAGTAVFTKE----KPITVANGFGVP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+ + +GR I EF FY +N P +G K + F R W + + +V + KP+I
Sbjct: 84 EVDGEGRSITLEFSNFYFINVQVPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVII 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
GD++V+HE ID++ P+ ++ +PGFT ERK F +L I
Sbjct: 142 GGDMSVAHERIDLAEPD---------------DNHHRPGFTGIERKEFSELLNAGFI 183
>gi|313232077|emb|CBY09188.1| unnamed protein product [Oikopleura dioica]
Length = 392
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 30/193 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+ VTWN L +K + F + T D D++ LQE ++ LK
Sbjct: 131 FRIVTWNVAGLYACIKKD---FCKAVKTLDCDILCLQETKLS-------------LKKPP 174
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
A E+L + ++NY S + Y+GTA+L K +P V + KT K+
Sbjct: 175 PAEIAEQLKEWK------YRNYAN--SEGKAGYSGTAILSKS--KPISVQRGIGKT--KH 222
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ GR AEFE F+L+ +Y PN+G + N R +W+ ++ ++ + + KP+I+CG
Sbjct: 223 DDFGRSCTAEFEKFFLVTSYVPNSG-RGLVNLDYRTNEWESDLRNYLTKLNKDKPVIYCG 281
Query: 221 DLNVSHEEIDVSH 233
DLNV+H ID+ +
Sbjct: 282 DLNVAHTAIDLKN 294
>gi|188588613|ref|YP_001921245.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|188498894|gb|ACD52030.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
Length = 251
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 55/235 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L VK F + + + D+ +QE ++ QE + D
Sbjct: 3 KLISWNVNGLRACVKKG---FLDILKESNADIFCIQESKL------------QEGQIDLN 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y +W+ A+ K Y+GTA+ K+ K ++ SL ++
Sbjct: 48 -----------------LEEYYDYWNYAEKKGYSGTAVFSKE----KPLNISLGIGIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRV+ EFE FYL+N Y PN+ +++ R W+ ++++ + + K +I CG
Sbjct: 87 DKEGRVLTLEFEEFYLVNVYTPNS--QQKLARIDYRMAWENDFRDYLNELNKDKSVIVCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275
DLNV+H+EID+ +P K + GF+ ER++F +LK I
Sbjct: 145 DLNVAHKEIDLKNP---------------KNNRNNAGFSDEEREKFDELLKSGFI 184
>gi|420437930|ref|ZP_14936910.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
gi|393050857|gb|EJB51811.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
Length = 243
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 54/222 (24%)
Query: 63 FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122
F +F + D DV +QE +M ++E+ ++ FK
Sbjct: 12 FMDFFNSVDADVFCIQESKM----------------------QQEQ-------NTFEFKG 42
Query: 123 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 181
Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y
Sbjct: 43 YFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLVNVY 98
Query: 182 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
PN+ ++ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 99 TPNS--QQALFRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP------ 150
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI--FLCFY 280
K + GF+ ER++F +L I F FY
Sbjct: 151 ---------KTNRKNAGFSDEEREKFSELLNAGFIDTFRYFY 183
>gi|416999368|ref|ZP_11939959.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
gi|333976808|gb|EGL77670.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
Length = 251
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 38/194 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + E N D D+ LQE ++
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFN---ELDADIFCLQETKLQPD---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+L P ++ Y W S Y+GTA+ + +P V+ + ++
Sbjct: 42 ----------QISLELPGYEQY--WNSAVKKGYSGTAVFTR--IKPLSVTNGI--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRVI AE++ FYL+ Y PN+ + E R W+ + ++L+ K P+I CG
Sbjct: 86 DQEGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMNWEDAFRNYLLELDKKKPVILCG 143
Query: 221 DLNVSHEEIDVSHP 234
DLNV+H+EID+ +P
Sbjct: 144 DLNVAHQEIDLKNP 157
>gi|359482196|ref|XP_002274714.2| PREDICTED: apurinic endonuclease-redox protein-like [Vitis
vinifera]
Length = 479
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 34/197 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K+ D DV++LQE ++ QE KD
Sbjct: 219 VKLMSWNVNGLRGLLKSKGFSALKLAQREDFDVLSLQETKL------------QE-KD-- 263
Query: 102 KASREEKLILMRALSSPPFKNYQ-IWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTA 158
+ A+ + Y+ +W+ + SK Y+GTA++ + +P V + L +
Sbjct: 264 ----------VEAIKQSVIEGYENSFWTCSVSKLGYSGTAIISR--IKPLSVRYGLGIS- 310
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
++ +GR++ AEFE+FYLL+ Y PN+G + S+ R +WD + ++ + KP+I
Sbjct: 311 -DHDSEGRLLTAEFESFYLLSGYVPNSGDGLKRLSY-RVTQWDSALGSYMKELEKSKPVI 368
Query: 218 WCGDLNVSHEEIDVSHP 234
GDLN +H+EID+ P
Sbjct: 369 LTGDLNCAHQEIDIHDP 385
>gi|417917517|ref|ZP_12561076.1| exodeoxyribonuclease III [Streptococcus parasanguinis SK236]
gi|342830154|gb|EGU64493.1| exodeoxyribonuclease III [Streptococcus parasanguinis SK236]
Length = 275
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ E + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAEDADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ ++ F Y+ W A YAGT L KK P V+
Sbjct: 58 EILEEL------------------FPGYENTWRSSQEPARKGYAGTMFLYKKGLTPV-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+ F++ Y PN G + + R+ WD + E++ +
Sbjct: 99 FPEIGAPSTMDLEGRIITLEFDHFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLAEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 157 DKEKPVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEEREGFTNLL 201
>gi|363900200|ref|ZP_09326706.1| exodeoxyribonuclease [Oribacterium sp. ACB1]
gi|395209879|ref|ZP_10398907.1| exodeoxyribonuclease III [Oribacterium sp. ACB8]
gi|361957054|gb|EHL10366.1| exodeoxyribonuclease [Oribacterium sp. ACB1]
gi|394704864|gb|EJF12396.1| exodeoxyribonuclease III [Oribacterium sp. ACB8]
Length = 252
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 59/232 (25%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L + N+ E +F + D+ LQE ++ + H +L
Sbjct: 3 KLISWNVNGLRAVLGKNFME--DF-QKLNADIFCLQETKLQEG------QIHLDL----- 48
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYE 162
P + +Q W Y+GTA+ K+ +P V + + T +++
Sbjct: 49 ---------------PGY--FQYWNYAIKKGYSGTAIFTKE--EPLSVQYGIGIT--EHD 87
Query: 163 PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQCSGK-PLIW 218
+GRVI EF+ +YL+ Y PN+ +N +R R +++ F+L K P+I+
Sbjct: 88 QEGRVITLEFKDYYLITVYVPNS-----QNELKRLPYRMEFEDAFLNFILNLEKKKPVIY 142
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
CGDLNV+HEEID+ +P+ LN GF+ ER +F +L
Sbjct: 143 CGDLNVAHEEIDLKNPD---TNHLNA------------GFSDEERAKFSRVL 179
>gi|392330776|ref|ZP_10275391.1| exodeoxyribonuclease III [Streptococcus canis FSL Z3-227]
gi|391418455|gb|EIQ81267.1| exodeoxyribonuclease III [Streptococcus canis FSL Z3-227]
Length = 275
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 103/236 (43%), Gaps = 42/236 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPT---KKHI 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
E + L + R+ P K Y AGT L K P V+F
Sbjct: 58 ET---LLGYFPDYLHVWRSSVEPARKGY-----------AGTMFLYKNTLNPV-VTFPEI 102
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 214
+ +GR+I EFE F++ Y PN G + + R+ WD++ +++ + K
Sbjct: 103 GAPTTMDAEGRIITLEFEEFFVTQVYTPNAG--DGLRRLEDRQIWDQKYADYLAELDAQK 160
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
P++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 161 PVLATGDYNVAHKEIDLANPS------------SNRR---SPGFTDEERQGFTNLL 201
>gi|269798609|ref|YP_003312509.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282849823|ref|ZP_06259207.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294792738|ref|ZP_06757885.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
gi|269095238|gb|ACZ25229.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282580760|gb|EFB86159.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294456637|gb|EFG25000.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
Length = 251
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 38/194 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + E N D D+ LQE ++
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFN---ELDADIFCLQETKLQPD---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+L P ++ Y W S Y+GTA+ + +P V+ + ++
Sbjct: 42 ----------QISLELPGYEQY--WNSAVKKGYSGTAVFTR--IKPLSVTNGI--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRVI AE++ FYL+ Y PN+ + E R W+ + ++L+ K P+I CG
Sbjct: 86 DQEGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMTWEDAFRNYLLELDKKKPVILCG 143
Query: 221 DLNVSHEEIDVSHP 234
DLNV+H+EID+ +P
Sbjct: 144 DLNVAHQEIDLKNP 157
>gi|304438523|ref|ZP_07398463.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368606|gb|EFM22291.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 250
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 97/230 (42%), Gaps = 53/230 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMEAFKELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + +P V++ + ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--VKPLSVAYGIGIP--EH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI EF YL+ Y PN K R W+ + F+L KP++ CG
Sbjct: 86 DHEGRVITMEFNDVYLVTVYTPNA--KRALERLDYRMTWEDAFRAFLLDLRAKKPVVVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
DLNV+H EID+ +P K + GFT ER +F +L
Sbjct: 144 DLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELL 178
>gi|227486633|ref|ZP_03916949.1| exodeoxyribonuclease III [Anaerococcus lactolyticus ATCC 51172]
gi|227235345|gb|EEI85360.1| exodeoxyribonuclease III [Anaerococcus lactolyticus ATCC 51172]
Length = 275
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAG-SKDAPKNH 94
+KF++WN +SL + ++ + + + DVIA+QE ++P G SK
Sbjct: 1 MKFISWNIDSLNAALTSDSARAIMSRLVLDTVIKENADVIAIQETKLPYTGLSKKHIAKL 60
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL 154
E D + R+ P K+ YAGT L KK + + ++
Sbjct: 61 AEYFPDYD-------YVYRSSEDPARKS-----------YAGTMTLYKKGLKVEP-TYPQ 101
Query: 155 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC 211
+ +GR+I EF+ FY + Y PN G N R R+ WDK +++
Sbjct: 102 IGAPCTMDFEGRIITLEFDNFYFTHVYTPNAG-----NGLTRLADRQVWDKLYADYLKSL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+HEEID++HPE N E PGFT ER+ F +L
Sbjct: 157 DQNKPVIAAGDFNVAHEEIDLAHPE------------NNHE---SPGFTDEEREGFTNLL 201
>gi|227530634|ref|ZP_03960683.1| exodeoxyribonuclease III [Lactobacillus vaginalis ATCC 49540]
gi|227349415|gb|EEJ39706.1| exodeoxyribonuclease III [Lactobacillus vaginalis ATCC 49540]
Length = 275
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSL---LLRVKNNWPEFSNF---ITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +S+ L E + I PDVIA+QE ++ SK+ P
Sbjct: 1 MKLISWNIDSINAALTGTSTRAEETRSVLHKIAGKHPDVIAIQETKL----SKNGPT--- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ L +++ L F +YQ+ W A YAGT L K ++P V+
Sbjct: 54 ----------KKHLAVLQEL----FPDYQVAWRSSVEPARKGYAGTMYLYLKEYEPT-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF F++ Y PN+G R+ WD +E++ +
Sbjct: 99 YPQIGAPETMDDEGRIITLEFPDFFVTEVYTPNSG--SGLKRLADRQVWDDCYREYLQKL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+HE ID++HPE + GFT ER+ F +L
Sbjct: 157 DQQKPVIASGDFNVAHESIDLAHPE---------------NNHHSAGFTDEEREHFTKLL 201
>gi|356498631|ref|XP_003518153.1| PREDICTED: apurinic endonuclease-redox protein-like [Glycine max]
Length = 507
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 103/229 (44%), Gaps = 47/229 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K D DV+ LQE ++ KD + Q L D
Sbjct: 247 VKLLSWNVNGLRALLKLEGFSALQLAQREDFDVLCLQETKLQ---EKDIEEIKQRLIDGY 303
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 159
S +W+ + SK Y+GTA++ + +P V + L
Sbjct: 304 ANS---------------------FWTCSVSKLGYSGTAIISR--IKPLSVRYGL--GIP 338
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
++ +GR++ AEF+TFYL+ Y PN+G + S+ R +WD + ++ + KP+I
Sbjct: 339 DHDSEGRLVTAEFDTFYLICGYVPNSGDGLKRLSY-RVTEWDPSLSNYLKELEKSKPVIL 397
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
GDLN +HEEID+ +P NK GFT ERK F
Sbjct: 398 TGDLNCAHEEIDIYNP------------AGNKR---SAGFTDEERKSFA 431
>gi|307353485|ref|YP_003894536.1| exodeoxyribonuclease III [Methanoplanus petrolearius DSM 11571]
gi|307156718|gb|ADN36098.1| exodeoxyribonuclease III [Methanoplanus petrolearius DSM 11571]
Length = 254
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 54/215 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L K F +F+ + PD++ +QE T
Sbjct: 1 MKLVSWNVNGLRAVEKKG---FLDFVNEYQPDILCVQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA ++ L ++ P K Y ++S A+ K Y+GTAL + F+P+ +S+ L
Sbjct: 37 KAHEDQ---LSSSIRHP--KGYFSYFSSAERKGYSGTALYSR--FEPESISYGFGVPEL- 88
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--------- 211
+ +GR+I+AE+ F L + Y PN +E F+ +F +C
Sbjct: 89 -DSEGRIIIAEYSDFNLYDIYFPNGKMSKERLQFK---------MDFYEECLRHAVSDLD 138
Query: 212 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
SGK +I CGD+N +H+EID++ P+ +K++G++
Sbjct: 139 SGKNVIICGDVNTAHKEIDLARPK--ENSKVSGFL 171
>gi|322389122|ref|ZP_08062685.1| exodeoxyribonuclease [Streptococcus parasanguinis ATCC 903]
gi|321144164|gb|EFX39579.1| exodeoxyribonuclease [Streptococcus parasanguinis ATCC 903]
Length = 282
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 109/243 (44%), Gaps = 48/243 (19%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAP 91
K + +K ++WN +SL + ++ E + D D+IA+QE ++ A G
Sbjct: 4 KGNTMKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAEDADIIAIQETKLSAKG---PT 60
Query: 92 KNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK---YAGTALLVKKCFQPK 148
K H E+ E+L P ++N W S +S YAGT L KK P
Sbjct: 61 KKHLEIL--------EELF-------PQYEN--TWRSSQESARKGYAGTMFLYKKELSPI 103
Query: 149 KVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV 208
V+F + +GR+I EF+ F++ Y PN G + R+ WD + E++
Sbjct: 104 -VTFPEIGAPSTMDLEGRIITLEFDGFFVTQVYTPNAG--DGLKRLAERQVWDVKYAEYL 160
Query: 209 LQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
KP++ GD NV+H+EID+++P N+ PGFT ER+ F
Sbjct: 161 ADLDKEKPVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEEREGFT 205
Query: 268 AIL 270
+L
Sbjct: 206 NLL 208
>gi|55823454|ref|YP_141895.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus CNRZ1066]
gi|55739439|gb|AAV63080.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus CNRZ1066]
Length = 275
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 108/240 (45%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + + T + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGDSARAQLSRAVIDTLVTENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ +D F +Y I W A YAGT L KK P ++
Sbjct: 58 QILEDY------------------FPDYVITWRSSVEPARKGYAGTMFLYKKELTPV-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+TF++ Y PN G + R+ WD++ +++ +
Sbjct: 99 YPEIGAPSTMDCEGRIITLEFDTFFVTQVYTPNAG--DGLKRLLERQIWDEKYADYLAEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER F +L
Sbjct: 157 DAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SPGFTDEERAGFTNLL 201
>gi|255578467|ref|XP_002530098.1| ap endonuclease, putative [Ricinus communis]
gi|223530409|gb|EEF32297.1| ap endonuclease, putative [Ricinus communis]
Length = 486
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 58/228 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K + DV+ QE ++ A G +++
Sbjct: 237 VKLMSWNVNGLRALLKLEGFSAVELAQRENFDVLCFQETKLQAKGYENS----------- 285
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ + SK Y+GTA++ + +P VS+ L
Sbjct: 286 ------------------------FWTCSHSKLGYSGTAIVSR--VKPLSVSYGL--GIA 317
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
++ +GR++ AEF++FYLLN Y PN+G + S+ R +WD + ++ + KP+I
Sbjct: 318 DHDSEGRLVTAEFDSFYLLNAYVPNSGDGLKRLSY-RVSQWDLSLSNYMKELEKSKPVIL 376
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
GDLN +H+EID+ +P A + N GFT ER+ F
Sbjct: 377 NGDLNCAHQEIDIYNP---AGNRRNA------------GFTDEERQSF 409
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,752,570,659
Number of Sequences: 23463169
Number of extensions: 201803846
Number of successful extensions: 513821
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 1978
Number of HSP's that attempted gapping in prelim test: 508614
Number of HSP's gapped (non-prelim): 3453
length of query: 287
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 146
effective length of database: 9,050,888,538
effective search space: 1321429726548
effective search space used: 1321429726548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)