BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023088
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P43138|APEX1_RAT DNA-(apurinic or apyrimidinic site) lyase OS=Rattus norvegicus
GN=Apex1 PE=1 SV=2
Length = 317
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 133/279 (47%), Gaps = 55/279 (19%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 30 KKTEKEAAGEGPVLYEDPPDQKTSASG-----KSATLKICSWNVDGLRAWIKK---KGLD 81
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ PD++ LQE + P QEL P +Q
Sbjct: 82 WVKEEAPDILCLQETK---CSENKLPAELQEL---------------------PGLTHQY 117
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 184
W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEFE+F L+ Y PN
Sbjct: 118 WSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFESFILVTAYVPN 173
Query: 185 NGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 243
G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 174 AG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPK-------- 223
Query: 244 GYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 224 ----GNKKN---AGFTPQERQGFGEMLQAVPLADSFRHL 255
>sp|P28352|APEX1_MOUSE DNA-(apurinic or apyrimidinic site) lyase OS=Mus musculus GN=Apex1
PE=1 SV=2
Length = 317
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 133/279 (47%), Gaps = 55/279 (19%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 30 KKTEKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLD 81
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ PD++ LQE + P QEL P +Q
Sbjct: 82 WVKEEAPDILCLQETK---CSENKLPAELQEL---------------------PGLTHQY 117
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 184
W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEFE+F L+ Y PN
Sbjct: 118 WSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFESFVLVTAYVPN 173
Query: 185 NGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 243
G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 174 AG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKG------- 224
Query: 244 GYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 225 -----NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 255
>sp|A2T6Y4|APEX1_PANTR DNA-(apurinic or apyrimidinic site) lyase OS=Pan troglodytes
GN=APEX1 PE=3 SV=1
Length = 318
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 134/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>sp|A1YFZ3|APEX1_PANPA DNA-(apurinic or apyrimidinic site) lyase OS=Pan paniscus GN=APEX1
PE=3 SV=1
Length = 318
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 134/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>sp|A2T7I6|APEX1_PONPY DNA-(apurinic or apyrimidinic site) lyase OS=Pongo pygmaeus
GN=APEX1 PE=3 SV=1
Length = 318
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 133/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ + F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>sp|P27695|APEX1_HUMAN DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1
PE=1 SV=2
Length = 318
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 133/276 (48%), Gaps = 55/276 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYEL 282
NK++ GFT ER+ FG +L+ + F L
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHL 256
>sp|A1YES6|APEX1_GORGO DNA-(apurinic or apyrimidinic site) lyase OS=Gorilla gorilla
gorilla GN=APEX1 PE=3 SV=1
Length = 318
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 127/265 (47%), Gaps = 55/265 (20%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +YQ W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSYQYWSA 121
Query: 129 -LADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PXXKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ + F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILK 271
NK++ GFT ER+ FG +L+
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQ 245
>sp|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase OS=Dictyostelium
discoideum GN=apeA PE=2 SV=2
Length = 361
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 51/235 (21%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
+ +K ++WN + F+ ++ +PDV+ LQE ++ N +K
Sbjct: 103 NQMKIISWNVAGFKSVLSKG---FTEYVEKENPDVLCLQETKI----------NPSNIKK 149
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
D K Y+ + AD K + GT +L KK +P ++F +
Sbjct: 150 DQMP-----------------KGYEYHFIEADQKGHHGTGVLTKK--KPNAITFGI--GI 188
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLI 217
K++ +GRVI E++ FY++NTY PN G + + R ++WD Q ++ + + KP+I
Sbjct: 189 AKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPII 248
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
WCGDLNV+H EID+ +P+ NK+ GFTI ER F L++
Sbjct: 249 WCGDLNVAHTEIDLKNPK------------TNKK---SAGFTIEERTSFSNFLEK 288
>sp|P23196|APEX1_BOVIN DNA-(apurinic or apyrimidinic site) lyase OS=Bos taurus GN=APEX1
PE=1 SV=2
Length = 318
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 130/265 (49%), Gaps = 55/265 (20%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAVGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + + ++ LS ++Q W +
Sbjct: 86 EEAPDILCLQE---------------------TKCSENKLPVELQELSG---LSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AE++ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEYDAFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK----------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILK 271
NK++ GFT ER+ FG +L+
Sbjct: 225 -GNKKN---AGFTPQERQGFGELLQ 245
>sp|P45951|ARP_ARATH Apurinic endonuclease-redox protein OS=Arabidopsis thaliana GN=ARP
PE=2 SV=2
Length = 536
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 115/239 (48%), Gaps = 61/239 (25%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K +TWN N L LL+ ++ + NF D++ LQE ++ KD + +
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSALQLAQRENF------DILCLQETKLQV---KDVEEIKK 326
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFS 153
L D S +WS + SK Y+GTA++ + +P V +
Sbjct: 327 TLIDGYDHS---------------------FWSCSVSKLGYSGTAIISR--IKPLSVRYG 363
Query: 154 LEKTALK-YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
T L ++ +GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + +
Sbjct: 364 ---TGLSGHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELE 419
Query: 213 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GDLN +HEEID+ +P NK GFTI ER+ FGA L
Sbjct: 420 KSKPVVLTGDLNCAHEEIDIFNP------------AGNKR---SAGFTIEERQSFGANL 463
>sp|A0MTA1|APEX1_DANRE DNA-(apurinic or apyrimidinic site) lyase OS=Danio rerio GN=apex1
PE=1 SV=1
Length = 310
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 114/243 (46%), Gaps = 42/243 (17%)
Query: 30 ETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKD 89
E + ++ + +K +WN + L VK N +++ DPD++ LQE
Sbjct: 43 EKLTSKDGRAANMKITSWNVDGLRAWVKKNG---LDWVRKEDPDILCLQE---------- 89
Query: 90 APKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQP 147
TK + + + + P K +W+ ++ K Y+G A+L K +P
Sbjct: 90 -----------TKCAEKALPADITGMPEYPHK----YWAGSEDKEGYSGVAMLCKT--EP 132
Query: 148 KKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF 207
V++ + K +++ +GRVI AEF F+L+ Y PN R+ WD + +
Sbjct: 133 LNVTYGIGKE--EHDKEGRVITAEFPDFFLVTAYVPNA--SRGLVRLDYRKTWDVDFRAY 188
Query: 208 VLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTIAER 263
+ KPL+ CGDLNV+H+EID+ +P+ K G+ P +E + Q GFT + R
Sbjct: 189 LCGLDARKPLVLCGDLNVAHQEIDLKNPK--GNRKNAGFTPEEREGFTQLLEAGFTDSFR 246
Query: 264 KRF 266
+ +
Sbjct: 247 ELY 249
>sp|P37454|EXOA_BACSU Exodeoxyribonuclease OS=Bacillus subtilis (strain 168) GN=exoA PE=1
SV=1
Length = 252
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 107/232 (46%), Gaps = 54/232 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P++
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPED-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P +V + + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGI--GVEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENVFVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GDLNV+H+EID+ +P K + GF+ ER+ F L+
Sbjct: 144 GDLNVAHQEIDLKNP---------------KANRNNAGFSDQEREAFTRFLE 180
>sp|P27864|RRP1_DROME Recombination repair protein 1 OS=Drosophila melanogaster GN=Rrp1
PE=1 SV=2
Length = 679
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 97/230 (42%), Gaps = 51/230 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN L +K + I +PD+ LQE + N Q ++ T
Sbjct: 427 LKICSWNVAGLRAWLKKDG---LQLIDLEEPDIFCLQETKC---------ANDQLPEEVT 474
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y +W YAG A+ K P V + + ++
Sbjct: 475 R-----------------LPGYHPYWLCMPGGYAGVAIYSK--IMPIHVEYGIGNE--EF 513
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ GR+I AE+E FYL+N Y PN+G K + + R +W+K Q +V + KP++ CG
Sbjct: 514 DDVGRMITAEYEKFYLINVYVPNSGRK--LVNLEPRMRWEKLFQAYVKKLDALKPVVICG 571
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
D+NVSH ID+ +P K + GFT ER + +L
Sbjct: 572 DMNVSHMPIDLENP---------------KNNTKNAGFTQEERDKMTELL 606
>sp|P0A2X4|EXOA_STRR6 Exodeoxyribonuclease OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=exoA PE=3 SV=1
Length = 275
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ E + + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPT---KKHV 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ ++ F Y+ W A YAGT L KK P +S
Sbjct: 58 EILEEL------------------FPGYENTWRSSQEPARKGYAGTMFLYKKELTPT-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+ F++ Y PN G + + R+ WD + E++ +
Sbjct: 99 FPEIGAPSTMDLEGRIITLEFDAFFVTQVYTPNAG--DGLKRLEERQVWDAKYAEYLAEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID+++P N+ PGFT ER F +L
Sbjct: 157 DKEKPVLATGDYNVAHNEIDLANP------------ASNRR---SPGFTDEERAGFTNLL 201
>sp|P0A2X3|EXOA_STRPN Exodeoxyribonuclease OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=exoA PE=3 SV=1
Length = 275
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 50/240 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ E + + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPT---KKHV 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ ++ F Y+ W A YAGT L KK P +S
Sbjct: 58 EILEEL------------------FPGYENTWRSSQEPARKGYAGTMFLYKKELTPT-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+ F++ Y PN G + + R+ WD + E++ +
Sbjct: 99 FPEIGAPSTMDLEGRIITLEFDAFFVTQVYTPNAG--DGLKRLEERQVWDAKYAEYLAEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID+++P N+ PGFT ER F +L
Sbjct: 157 DKEKPVLATGDYNVAHNEIDLANP------------ASNRR---SPGFTDEERAGFTNLL 201
>sp|P44318|EX3_HAEIN Exodeoxyribonuclease III OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=xthA PE=3 SV=1
Length = 267
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 81/197 (41%), Gaps = 41/197 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF+++N N L R + I + PDVI LQE+++
Sbjct: 1 MKFISFNINGLRARPH----QLEAIIEKYQPDVIGLQEIKV------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
A + L F + Q + G ALL K+ +PK +
Sbjct: 38 -ADEAFPYEITENLGYHVFHHGQ-------KGHYGVALLTKQ--EPKVIRRGFPTD--NE 85
Query: 162 EPDGRVILAEFETFY----LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK--P 215
+ R+I+A+ ET + ++N Y P + E F + K+ +Q+++ + K P
Sbjct: 86 DAQKRIIMADLETEFGLLTVINGYFPQGESRAHETKFPAKEKFYADLQQYLEKEHDKSNP 145
Query: 216 LIWCGDLNVSHEEIDVS 232
++ GD+N+S ++D+
Sbjct: 146 ILIMGDMNISPSDLDIG 162
>sp|P87175|APN2_SCHPO DNA-(apurinic or apyrimidinic site) lyase 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=apn2 PE=1 SV=1
Length = 523
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 145 FQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 204
F PK + KTA + +GR IL +F+ F L+ Y P N EN + RR + K +
Sbjct: 118 FFPKDID---RKTANWIDSEGRCILLDFQMFILIGVYCPVNS---GENRLEYRRAFYKAL 171
Query: 205 QEFV---LQCSGKPLIWCGDLNVSHEEIDVS 232
+E + ++ + +I GD+N+ ID +
Sbjct: 172 RERIERLIKEGNRKIILVGDVNILCNPIDTA 202
>sp|A6NJ88|SGE1L_HUMAN Putative SAGE1-like protein OS=Homo sapiens PE=5 SV=4
Length = 616
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 44 FVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
+ T N N +R++NN P+F+N ++T P I + +PA +KDA N
Sbjct: 209 YATINHNVYEVRMENNQPQFNNVLSTVKPGHINMAAAGIPAMSAKDAVVN 258
>sp|P0A1A9|EX3_SALTY Exodeoxyribonuclease III OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=xthA PE=3 SV=1
Length = 268
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 78/198 (39%), Gaps = 43/198 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV++N N L R + + PDVI LQE ++ H E
Sbjct: 1 MKFVSFNINGLRARPH----QLEAIVEKHQPDVIGLQETKV-----------HDE----- 40
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
M L Y +++ Y G ALL K + F +
Sbjct: 41 ----------MFPLEEVAKLGYNVFYHGQKGHY-GVALLTKATPISVRRGFPDDGE---- 85
Query: 162 EPDGRVILAEFET----FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV---LQCSGK 214
E R+I+AE + ++N Y P ++ F + ++ + +Q ++ L+C
Sbjct: 86 EAQRRIIMAEIPSPLGNITVINGYFPQGESRDHPLKFPAKAQFYQNLQNYLETELKCD-N 144
Query: 215 PLIWCGDLNVSHEEIDVS 232
P++ GD+N+S ++D+
Sbjct: 145 PVLIMGDMNISPTDLDIG 162
>sp|P0A1B0|EX3_SALTI Exodeoxyribonuclease III OS=Salmonella typhi GN=xthA PE=3 SV=1
Length = 268
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 78/198 (39%), Gaps = 43/198 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV++N N L R + + PDVI LQE ++ H E
Sbjct: 1 MKFVSFNINGLRARPH----QLEAIVEKHQPDVIGLQETKV-----------HDE----- 40
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
M L Y +++ Y G ALL K + F +
Sbjct: 41 ----------MFPLEEVAKLGYNVFYHGQKGHY-GVALLTKATPISVRRGFPDDGE---- 85
Query: 162 EPDGRVILAEFET----FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV---LQCSGK 214
E R+I+AE + ++N Y P ++ F + ++ + +Q ++ L+C
Sbjct: 86 EAQRRIIMAEIPSPLGNITVINGYFPQGESRDHPLKFPAKAQFYQNLQNYLETELKCD-N 144
Query: 215 PLIWCGDLNVSHEEIDVS 232
P++ GD+N+S ++D+
Sbjct: 145 PVLIMGDMNISPTDLDIG 162
>sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=APN2 PE=1
SV=1
Length = 520
Score = 38.5 bits (88), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 155 EKTALKYEPDGRVILAEFET-FYLLNTYAPNNGWKEEENSFQRRRKWD---KRIQEFVLQ 210
EK+AL+ + +GR ++ E +++ Y P N EE R R +R++ L
Sbjct: 154 EKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGEMFRLRFLKVLLRRVRN--LD 211
Query: 211 CSGKPLIWCGDLNVSHEEID 230
GK ++ GD+NV + ID
Sbjct: 212 KIGKKIVLMGDVNVCRDLID 231
>sp|A7YWI9|TYDP2_BOVIN Tyrosyl-DNA phosphodiesterase 2 OS=Bos taurus GN=TDP2 PE=2 SV=1
Length = 364
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 28 TTETSSEENSKKDPLKFVTWN-----ANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM 82
T+E S + F+TWN N+LL R + +++T + PDVI LQEV
Sbjct: 102 TSEDKSVQQEDGSVFSFITWNIDGLDMNNLLERARG----VCSYLTLYSPDVIFLQEVIP 157
Query: 83 P 83
P
Sbjct: 158 P 158
>sp|Q9JIG7|CCD22_MOUSE Coiled-coil domain-containing protein 22 OS=Mus musculus GN=Ccdc22
PE=1 SV=1
Length = 627
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 19/137 (13%)
Query: 46 TWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASR 105
TW A R P+ S F T E ++ AA D P Q L+ DT+A++
Sbjct: 278 TWGA-----RAMTGVPKGSRF--THSEKFTFHLEPQVQAAQVADVPATSQRLEQDTRAAQ 330
Query: 106 EEKLILMR-ALSSPPFKNYQIWWSLADSKYAGTALL-VKKCFQPKKVSFSLEKTALKYE- 162
E++L +R L+S N+ I AD K G L+ V+ + ++S + ++ AL+ +
Sbjct: 331 EQELESLREQLAS---VNHNIEEVEADMKTLGINLVQVETECRQSELSVAEQEQALRLKS 387
Query: 163 ------PDGRVILAEFE 173
PDG LA+ +
Sbjct: 388 RTVELLPDGAANLAKLQ 404
>sp|Q5ZHV8|RMI1_CHICK RecQ-mediated genome instability protein 1 OS=Gallus gallus GN=RMI1
PE=2 SV=1
Length = 627
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 35/153 (22%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
KP+E K A + S DG +T S + NS V+ +S ++ +KN E N
Sbjct: 385 KPVEVTSKQKNLARTVSTGDGTSTGGSLQCNS-------VSQACSSAIVLLKNPHEERRN 437
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASR-----EEKLILMRA------ 114
PD + Q S+ AP + Q KD +S+ +++ IL R
Sbjct: 438 ---DLGPDESSCQ--------SRHAPDSRQLNKDPVSSSKTDPEADQQAILCRPGNACDL 486
Query: 115 -LSSPPFKNYQIWWSLADSKYAGTALLVK-KCF 145
L SPPF + SL +K T LVK KCF
Sbjct: 487 DLDSPPF----TYISLLLAKKPETITLVKVKCF 515
>sp|Q2TL32|UBR4_RAT E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegicus GN=Ubr4 PE=2
SV=2
Length = 5194
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 79/200 (39%), Gaps = 25/200 (12%)
Query: 17 PALSPSK-KDGETTETSSEENSKKDPLK--FVTWNANSL--------LLRVKNNWPEFSN 65
P +SP +GE E SS E + K F+ N SL LLRV N P F
Sbjct: 209 PPISPQALVEGENDEQSSTEQASAVKTKNVFIAQNVASLQELGGSEKLLRVCLNLPYFLR 268
Query: 66 FITTFDPDVIALQEVRMPA-AGSKDAPKN--HQELKDDTKASREEKLILMRALSSPPFKN 122
+I F V+A MPA A +N H + D T A L ++ L+ ++
Sbjct: 269 YINRFQDAVVANSFFIMPATVADATAVRNGFHSLVIDVTMALDTLSLPVLEPLNPSRLQD 328
Query: 123 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE----KTALK---YEPDGRVILAEFETF 175
+ SL+ YAG + V C V + + T+ K YE D I+ +
Sbjct: 329 VTV-LSLS-CLYAGVS--VATCMAILHVGSAQQVRTGSTSSKEEDYESDAATIVQKCLEI 384
Query: 176 YLLNTYAPNNGWKEEENSFQ 195
Y + A ++ + FQ
Sbjct: 385 YDMIGQAISSSRRAGGEHFQ 404
>sp|O95551|TYDP2_HUMAN Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1
Length = 362
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 25 DGETTETSSEENSKKD---PLKFVTWNANSLLLRVKNNWPE----FSNFITTFDPDVIAL 77
D T++ S E+++++ +TWN + L L NN E +++ + PDVI L
Sbjct: 94 DSTTSKISPSEDTQQENGSMFSLITWNIDGLDL---NNLSERARGVCSYLALYSPDVIFL 150
Query: 78 QEVRMP 83
QEV P
Sbjct: 151 QEVIPP 156
>sp|Q28FQ5|TYDP2_XENTR Tyrosyl-DNA phosphodiesterase 2 OS=Xenopus tropicalis GN=tdp2 PE=2
SV=2
Length = 373
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 19 LSPSKKDGETTETSSEENSKKDPLKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIAL 77
L +K + T+ +S+ + + F+TWN + L V +++ + PDV+ L
Sbjct: 102 LVVTKSEATTSNSSTVKQEDESHFSFLTWNIDGLDESNVAERARGVCSYLALYSPDVVFL 161
Query: 78 QEVRMP 83
QEV P
Sbjct: 162 QEVIPP 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,017,574
Number of Sequences: 539616
Number of extensions: 4769620
Number of successful extensions: 12827
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 12782
Number of HSP's gapped (non-prelim): 38
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)