Query 023088
Match_columns 287
No_of_seqs 239 out of 1803
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:21:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023088.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023088hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0708 XthA Exonuclease III [ 100.0 6.5E-44 1.4E-48 315.3 19.6 197 42-286 1-200 (261)
2 PRK13911 exodeoxyribonuclease 100.0 3E-41 6.6E-46 301.4 21.6 191 42-286 1-193 (250)
3 PRK11756 exonuclease III; Prov 100.0 4.7E-33 1E-37 250.9 21.6 199 42-285 1-205 (268)
4 TIGR00195 exoDNase_III exodeox 100.0 3.5E-32 7.7E-37 243.3 21.9 192 42-285 1-194 (254)
5 TIGR00633 xth exodeoxyribonucl 100.0 1.6E-29 3.4E-34 225.2 21.5 194 42-286 1-198 (255)
6 PRK05421 hypothetical protein; 99.7 2.1E-16 4.6E-21 142.4 14.7 147 38-226 40-195 (263)
7 KOG1294 Apurinic/apyrimidinic 99.7 4.6E-16 1E-20 143.1 11.0 205 40-287 62-277 (335)
8 PF03372 Exo_endo_phos: Endonu 99.5 2.2E-13 4.7E-18 117.9 12.7 153 45-230 1-173 (249)
9 TIGR03395 sphingomy sphingomye 99.5 6.1E-13 1.3E-17 121.1 15.3 162 42-229 1-193 (283)
10 PRK15251 cytolethal distending 99.5 3E-12 6.6E-17 114.5 17.0 174 38-229 21-200 (271)
11 COG3568 ElsH Metal-dependent h 99.4 2.9E-12 6.3E-17 113.8 13.0 159 42-231 10-182 (259)
12 PTZ00297 pantothenate kinase; 99.3 3.8E-11 8.1E-16 129.1 17.6 167 38-225 7-207 (1452)
13 PLN03144 Carbon catabolite rep 99.3 5.7E-11 1.2E-15 117.3 15.2 161 38-228 251-470 (606)
14 KOG3873 Sphingomyelinase famil 99.2 2.1E-11 4.6E-16 111.2 7.9 165 38-229 5-186 (422)
15 KOG2756 Predicted Mg2+-depende 99.2 5.3E-10 1.2E-14 98.5 13.6 155 39-227 97-257 (349)
16 KOG2338 Transcriptional effect 99.1 3.1E-09 6.7E-14 100.9 16.5 159 40-228 115-307 (495)
17 smart00476 DNaseIc deoxyribonu 99.1 1.1E-08 2.3E-13 92.7 17.0 160 40-229 16-192 (276)
18 smart00128 IPPc Inositol polyp 98.6 1E-06 2.2E-11 81.4 14.7 165 41-228 4-196 (310)
19 COG3021 Uncharacterized protei 98.5 3.7E-07 8E-12 82.9 6.9 148 38-228 85-237 (309)
20 PF14529 Exo_endo_phos_2: Endo 98.4 1.1E-06 2.3E-11 68.7 7.2 73 175-280 1-73 (119)
21 COG5239 CCR4 mRNA deadenylase, 97.8 7E-05 1.5E-09 69.1 8.1 44 41-84 30-86 (378)
22 KOG0566 Inositol-1,4,5-triphos 97.1 0.0043 9.2E-08 63.7 11.2 164 41-233 538-731 (1080)
23 KOG0620 Glucose-repressible al 93.4 0.062 1.4E-06 50.7 2.9 77 41-144 19-116 (361)
24 PLN03191 Type I inositol-1,4,5 83.6 5.3 0.00011 40.1 8.2 51 174-227 421-483 (621)
25 PTZ00312 inositol-1,4,5-tripho 81.6 4 8.6E-05 37.4 6.0 56 174-229 81-144 (356)
26 PLN03191 Type I inositol-1,4,5 77.8 2.2 4.7E-05 42.8 3.3 38 41-81 109-149 (621)
27 KOG1294 Apurinic/apyrimidinic 53.4 27 0.00058 32.8 5.1 62 161-230 9-72 (335)
28 COG2374 Predicted extracellula 45.3 27 0.00058 36.0 4.1 31 197-227 654-688 (798)
29 PLN02504 nitrilase 34.9 69 0.0015 30.0 4.9 62 14-83 5-69 (346)
30 KOG0620 Glucose-repressible al 33.1 23 0.00051 33.5 1.4 16 213-228 221-236 (361)
31 COG5411 Phosphatidylinositol 5 29.3 79 0.0017 30.7 4.2 49 174-227 166-220 (460)
32 TIGR02855 spore_yabG sporulati 28.5 36 0.00079 30.9 1.8 22 60-81 142-163 (283)
33 KOG1976 Inositol polyphosphate 26.2 77 0.0017 29.4 3.4 58 174-231 170-235 (391)
34 PF04320 DUF469: Protein with 25.4 3.1E+02 0.0068 21.0 6.3 25 255-279 67-100 (101)
35 PF05582 Peptidase_U57: YabG p 24.9 45 0.00098 30.4 1.7 22 60-81 143-164 (287)
36 cd07391 MPP_PF1019 Pyrococcus 23.9 90 0.002 25.7 3.3 26 199-224 28-53 (172)
37 PF00272 Cecropin: Cecropin fa 23.1 12 0.00026 22.1 -1.5 7 4-10 2-8 (30)
38 COG5239 CCR4 mRNA deadenylase, 22.2 1.1E+02 0.0023 29.0 3.7 56 174-230 191-259 (378)
No 1
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.5e-44 Score=315.27 Aligned_cols=197 Identities=29% Similarity=0.504 Sum_probs=168.2
Q ss_pred cEEEEEecCccchhhhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 023088 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (287)
Q Consensus 42 lkIiTwNv~gl~~~~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~~~~~ 121 (287)
|||+||||||++.+.+ .+.+||.+++|||||||||+.....+|.. .+ ...
T Consensus 1 mkI~SwNVNgiRar~~----~~~~~l~~~~pDVlclQEtK~~~~~fp~~-----------------------~~---~~~ 50 (261)
T COG0708 1 MKIASWNVNGLRARLK----KLLDWLEEEQPDVLCLQETKAQDEQFPRE-----------------------EL---EAL 50 (261)
T ss_pred CeeEEEehhhHHHHHH----HHHHHHHHhCCCEEEEEecccCcccCCHh-----------------------HH---hhC
Confidence 7999999999999984 59999999999999999999999887631 12 137
Q ss_pred CceEEEEccCCCceeEEEEEecCCCcceEeecCcccccccCCCCCEEEEEeCCEEEEEEeeCCCCCCCchhhHHHHHHHH
Q 023088 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 201 (287)
Q Consensus 122 gy~~~~~~~~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l~~~~~~~~linvY~P~~~~~~~~~~~~~r~~f~ 201 (287)
||+.++.++.++++||||+||.+ |..+..++++ ....|.+||+|.++++.++|+|+|+|+++.. ..+++.+|++|+
T Consensus 51 GY~~~~~~gqKgysGVailsr~~--~~~v~~g~~~-~~~~d~e~R~I~a~~~~~~v~~~Y~PnG~~~-~~~k~~yKl~f~ 126 (261)
T COG0708 51 GYHHVFNHGQKGYSGVAILSKKP--PDDVRRGFPG-EEEDDEEGRVIEAEFDGFRVINLYFPNGSSI-GLEKFDYKLRFL 126 (261)
T ss_pred CceEEEecCcCCcceEEEEEccC--chhhhcCCCC-CccccccCcEEEEEECCEEEEEEEcCCCCCC-CCcchHHHHHHH
Confidence 99666666778899999999986 5577778764 1236789999999999999999999999872 236799999999
Q ss_pred HHHHHHHHhC--CCCCEEEEecCCCCCCCccccCc-hhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeeee
Q 023088 202 KRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHP-EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLC 278 (287)
Q Consensus 202 ~~L~~~l~~~--~~~pvIl~GDFN~~~~~~D~~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~er~~l~~l~~~g~lvD~ 278 (287)
+.|.+++.++ .+.|+|+|||||++|.++|+++| +.+. +.+.++|+++||+||++|++.| ++|+
T Consensus 127 ~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~~~-------------n~~~~~f~~eeR~~~~~ll~~G-~~D~ 192 (261)
T COG0708 127 DALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWL-------------NEGNSGFLPEERAWFRRLLNAG-FVDT 192 (261)
T ss_pred HHHHHHHHHHhhcCCCEEEecccccCCchhcccCchhhhh-------------cCCCCCCCHHHHHHHHHHHHcc-hhhh
Confidence 9999999874 57999999999999999999998 4332 3578999999999999999999 8999
Q ss_pred eeccccCC
Q 023088 279 FYELAVMK 286 (287)
Q Consensus 279 ~R~~~p~~ 286 (287)
+|.+||..
T Consensus 193 ~R~~~p~~ 200 (261)
T COG0708 193 FRLFHPEP 200 (261)
T ss_pred hHhhCCCC
Confidence 99999974
No 2
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=100.00 E-value=3e-41 Score=301.36 Aligned_cols=191 Identities=34% Similarity=0.627 Sum_probs=161.3
Q ss_pred cEEEEEecCccchhhhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 023088 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (287)
Q Consensus 42 lkIiTwNv~gl~~~~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~~~~~ 121 (287)
|||+||||||++++.+ ..+.+||++++|||||||||+.....++ + ...
T Consensus 1 mki~swNVNgir~~~~---~~~~~~l~~~~~DIiclQEtK~~~~~~~--------------------------~---~~~ 48 (250)
T PRK13911 1 MKLISWNVNGLRACMT---KGFMDFFNSVDADVFCIQESKMQQEQNT--------------------------F---EFK 48 (250)
T ss_pred CEEEEEEeCChhHhhh---hhHHHHHHhcCCCEEEEEeecccccccc--------------------------c---ccC
Confidence 7999999999998875 3699999999999999999999876321 1 137
Q ss_pred CceEEEEcc-CCCceeEEEEEecCCCcceEeecCcccccccCCCCCEEEEEeCCEEEEEEeeCCCCCCCchhhHHHHHHH
Q 023088 122 NYQIWWSLA-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 200 (287)
Q Consensus 122 gy~~~~~~~-~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l~~~~~~~~linvY~P~~~~~~~~~~~~~r~~f 200 (287)
||+.++..+ .++++||||++|.+ |+.+.++++. ...|.+||+|+++++.++|+|+|+|+++... .++++|.+|
T Consensus 49 gY~~~~~~~~~kgy~GVAi~~k~~--~~~v~~~~~~--~~~d~eGR~I~~~~~~~~l~nvY~Pn~~~~~--~r~~~K~~~ 122 (250)
T PRK13911 49 GYFDFWNCAIKKGYSGVVTFTKKE--PLSVSYGINI--EEHDKEGRVITCEFESFYLVNVYTPNSQQAL--SRLSYRMSW 122 (250)
T ss_pred CceEEEEecccCccceEEEEEcCC--chheEEcCCC--CcccccCCEEEEEECCEEEEEEEecCCCCCC--cchHHHHHH
Confidence 998777543 56789999999985 6677777752 3568899999999999999999999988643 588899999
Q ss_pred HHHHHHHHHhC-CCCCEEEEecCCCCCCCccccCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeeeee
Q 023088 201 DKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCF 279 (287)
Q Consensus 201 ~~~L~~~l~~~-~~~pvIl~GDFN~~~~~~D~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~er~~l~~l~~~g~lvD~~ 279 (287)
++.|.+++.+. .+.++|+|||||++|.++|+++|.. +.+.+||+++||++|+++++.| |+|+|
T Consensus 123 ~~~~~~~l~~l~~~~~~Ii~GD~Nva~~~~D~~~~~~---------------~~~~~gf~~~er~~f~~~l~~g-l~D~~ 186 (250)
T PRK13911 123 EVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKT---------------NRKNAGFSDEERGKFSELLNAG-FIDTF 186 (250)
T ss_pred HHHHHHHHHhcccCCCEEEEccccCCCChhhccChhh---------------cCCCCCcCHHHHHHHHHHHhcC-Ceehh
Confidence 99999999865 4579999999999999999998752 2367899999999999999986 99999
Q ss_pred eccccCC
Q 023088 280 YELAVMK 286 (287)
Q Consensus 280 R~~~p~~ 286 (287)
|.+||.+
T Consensus 187 R~~~p~~ 193 (250)
T PRK13911 187 RYFYPNK 193 (250)
T ss_pred hhhCCCC
Confidence 9999973
No 3
>PRK11756 exonuclease III; Provisional
Probab=100.00 E-value=4.7e-33 Score=250.91 Aligned_cols=199 Identities=24% Similarity=0.373 Sum_probs=148.5
Q ss_pred cEEEEEecCccchhhhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 023088 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (287)
Q Consensus 42 lkIiTwNv~gl~~~~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~~~~~ 121 (287)
|||+||||+|++.+. ..+.++|++++|||||||||+.....++. ..+. ..
T Consensus 1 mri~T~Nv~g~~~~~----~~i~~~i~~~~pDIi~LQE~~~~~~~~~~-----------------------~~~~---~~ 50 (268)
T PRK11756 1 MKFVSFNINGLRARP----HQLEAIIEKHQPDVIGLQETKVHDEMFPL-----------------------EEVE---AL 50 (268)
T ss_pred CEEEEEEcCCHHHHH----HHHHHHHHhcCCCEEEEEecccccccCCH-----------------------HHHH---hc
Confidence 799999999987765 56999999999999999999876543221 0111 26
Q ss_pred CceEEEEccCCCceeEEEEEecCCCcceEeecCcccccccCCCCCEEEEEeC----CEEEEEEeeCCCCCCCchhhHHHH
Q 023088 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE----TFYLLNTYAPNNGWKEEENSFQRR 197 (287)
Q Consensus 122 gy~~~~~~~~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l~~~~~----~~~linvY~P~~~~~~~~~~~~~r 197 (287)
||++++. +..+++|||||||.+ +..+...++. ...+.++|+|.+.+. .++++|+|+|++....+..+++.|
T Consensus 51 gy~~~~~-~~~~~~GvailSr~p--~~~~~~~~~~--~~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r 125 (268)
T PRK11756 51 GYHVFYH-GQKGHYGVALLSKQT--PIAVRKGFPT--DDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAK 125 (268)
T ss_pred CCEEEEe-CCCCCCEEEEEECCC--hHHeEECCCC--ccccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHH
Confidence 8987765 455788999999996 3344444432 123457899988773 599999999998654333456678
Q ss_pred HHHHHHHHHHHHhC--CCCCEEEEecCCCCCCCccccCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHcCCe
Q 023088 198 RKWDKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275 (287)
Q Consensus 198 ~~f~~~L~~~l~~~--~~~pvIl~GDFN~~~~~~D~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~er~~l~~l~~~g~l 275 (287)
.+|+..|..++.+. .+.|+|||||||+++.++|++++.. +.+.+ ...+.++|+++||++++.+++.| |
T Consensus 126 ~~~~~~l~~~l~~~~~~~~pvIl~GDfN~~~~~~D~~~~~~--~~~~~-------~~~~~~~~~~~er~~~~~l~~~~-l 195 (268)
T PRK11756 126 RQFYQDLQNYLETELSPDNPLLIMGDMNISPTDLDIGIGEE--NRKRW-------LRTGKCSFLPEEREWLDRLMDWG-L 195 (268)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeecccCCChhhcCCccc--ChHHh-------cccCCccCCHHHHHHHHHHHhCC-c
Confidence 88999999888763 5679999999999999999975431 11100 12356789999999999998866 9
Q ss_pred eeeeeccccC
Q 023088 276 FLCFYELAVM 285 (287)
Q Consensus 276 vD~~R~~~p~ 285 (287)
+|+||.+||.
T Consensus 196 ~D~~R~~~p~ 205 (268)
T PRK11756 196 VDTFRQLNPD 205 (268)
T ss_pred EeehhhhCCC
Confidence 9999999996
No 4
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=100.00 E-value=3.5e-32 Score=243.26 Aligned_cols=192 Identities=26% Similarity=0.505 Sum_probs=151.1
Q ss_pred cEEEEEecCccchhhhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 023088 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (287)
Q Consensus 42 lkIiTwNv~gl~~~~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~~~~~ 121 (287)
|||+||||+|++.+. ..+.++|+.++|||||||||+.....++. .+. ...
T Consensus 1 mri~t~Ni~g~~~~~----~~~~~~l~~~~~DIi~LQE~~~~~~~~~~------------------------~~~--~~~ 50 (254)
T TIGR00195 1 MKIISWNVNGLRARL----HKGLAWLKENQPDVLCLQETKVQDEQFPL------------------------EPF--HKE 50 (254)
T ss_pred CEEEEEEcCcHHHhH----HHHHHHHHhcCCCEEEEEecccchhhCCH------------------------HHh--hcC
Confidence 799999999998765 45899999999999999999876532210 111 126
Q ss_pred CceEEEEccCCCceeEEEEEecCCCcceEeecCcccccccCCCCCEEEEEeCCEEEEEEeeCCCCCCCchhhHHHHHHHH
Q 023088 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 201 (287)
Q Consensus 122 gy~~~~~~~~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l~~~~~~~~linvY~P~~~~~~~~~~~~~r~~f~ 201 (287)
||..+++.+ ++++||||++|.+ |+.+..+++. ...+.+||++.+++.++.|+|+|+|+++.. ..+++..|.+|+
T Consensus 51 g~~~~~~~~-~g~~Gvailsr~~--~~~~~~~~~~--~~~~~~~r~i~~~~~~~~l~~~~~p~~~~~-~~~~~~~r~~~~ 124 (254)
T TIGR00195 51 GYHVFFSGQ-KGYSGVAIFSKEE--PLSVRRGFGV--EEEDAEGRIIMAEFDSFLVINGYFPNGSRD-DSEKLPYKLQWL 124 (254)
T ss_pred CcEEEEecC-CCcceEEEEEcCC--cceEEECCCC--cccccCCCEEEEEECCEEEEEEEccCCCCC-CCccHHHHHHHH
Confidence 888777644 5778999999964 6655554432 235679999999999999999999996532 234677788999
Q ss_pred HHHHHHHHhC--CCCCEEEEecCCCCCCCccccCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeeeee
Q 023088 202 KRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCF 279 (287)
Q Consensus 202 ~~L~~~l~~~--~~~pvIl~GDFN~~~~~~D~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~er~~l~~l~~~g~lvD~~ 279 (287)
+.|.+++.+. .+.|+|+|||||+.+.++|++++.. ..+.++|++.||++|+++++.| |+|+|
T Consensus 125 ~~l~~~~~~~~~~~~pvIi~GDfN~~~~~~d~~~~~~---------------~~~~~~~~~~e~~~~~~l~~~~-l~D~~ 188 (254)
T TIGR00195 125 EALQNYLEKLVDKDKPVLICGDMNIAPTEIDLHSPDE---------------NRNHTGFLPEEREWLDRLLEAG-LVDTF 188 (254)
T ss_pred HHHHHHHHHHHhcCCcEEEEeecccCCChhhccChhh---------------cCCCcCcChHHHHHHHHHHHcC-CEeee
Confidence 9999998764 4689999999999999999987642 2346789999999999999876 99999
Q ss_pred eccccC
Q 023088 280 YELAVM 285 (287)
Q Consensus 280 R~~~p~ 285 (287)
|.+||.
T Consensus 189 r~~~~~ 194 (254)
T TIGR00195 189 RKFNPD 194 (254)
T ss_pred cccCCC
Confidence 999986
No 5
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.6e-29 Score=225.21 Aligned_cols=194 Identities=30% Similarity=0.545 Sum_probs=145.9
Q ss_pred cEEEEEecCccchhhhcCchhH-HHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCC
Q 023088 42 LKFVTWNANSLLLRVKNNWPEF-SNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120 (287)
Q Consensus 42 lkIiTwNv~gl~~~~~~~~~~l-~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~~~~ 120 (287)
|||+||||+|++.+.+ .+ .++|++++|||||||||+.....+. + .+. ..
T Consensus 1 lri~t~Nv~g~~~~~~----~~~~~~l~~~~~DIv~LQE~~~~~~~~~----------~--------------~~~--~~ 50 (255)
T TIGR00633 1 MKIISWNVNGLRARLH----KLFLDWLKEEQPDVLCLQETKVADEQFP----------A--------------ELF--EE 50 (255)
T ss_pred CEEEEEecccHHHHhh----ccHHHHHHhcCCCEEEEEeccCchhhCC----------H--------------hHh--cc
Confidence 7999999999987664 45 9999999999999999997643221 0 011 12
Q ss_pred CCceEEEEccC-CCceeEEEEEecCCCcceEeecCcccccccCCCCCEEEEEeCCEEEEEEeeCCCCCCCchhhHHHHHH
Q 023088 121 KNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 199 (287)
Q Consensus 121 ~gy~~~~~~~~-~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l~~~~~~~~linvY~P~~~~~~~~~~~~~r~~ 199 (287)
.||..++.... .+++|+|||+|.++ ..+..+++. ...+.++|+|.+++.+++|+++|+|+++... .+++..|..
T Consensus 51 ~g~~~~~~~~~~~~~~G~ailsr~~~--~~~~~~~~~--~~~~~~~r~l~~~~~~~~i~~vy~p~~~~~~-~~~~~~r~~ 125 (255)
T TIGR00633 51 LGYHVFFHGAKSKGYSGVAILSKVEP--LDVRYGFGG--EEHDEEGRVITAEFDGFTVVNVYVPNGGSRG-LERLEYKLQ 125 (255)
T ss_pred CCceEEEeecccCCcceEEEEEcCCc--ceEEECCCC--CcccCCCcEEEEEECCEEEEEEEccCCCCCC-chhHHHHHH
Confidence 68877665433 36789999999863 233343332 2456789999998889999999999976321 234566788
Q ss_pred HHHHHHHHHHh--CCCCCEEEEecCCCCCCCccccCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeee
Q 023088 200 WDKRIQEFVLQ--CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFL 277 (287)
Q Consensus 200 f~~~L~~~l~~--~~~~pvIl~GDFN~~~~~~D~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~er~~l~~l~~~g~lvD 277 (287)
|++.+...+.+ ..+.|+|+|||||+.+..+|+.++. .+.+.+++++.++.+|+.+++.| |+|
T Consensus 126 ~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~-l~D 189 (255)
T TIGR00633 126 FWDALFQYYEKELDAGKPVIICGDMNVAHTEIDLGNPK---------------ENKGNAGFTPEEREWFDELLEAG-LVD 189 (255)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeecccCCChHHccChh---------------hcCCCCCcCHHHHHHHHHHHHcC-CEe
Confidence 88888776643 2567999999999999999987653 12356788999999999999966 999
Q ss_pred eeeccccCC
Q 023088 278 CFYELAVMK 286 (287)
Q Consensus 278 ~~R~~~p~~ 286 (287)
+||..||..
T Consensus 190 ~~~~~~~~~ 198 (255)
T TIGR00633 190 TFRHFNPDT 198 (255)
T ss_pred cchhhCCCC
Confidence 999999964
No 6
>PRK05421 hypothetical protein; Provisional
Probab=99.71 E-value=2.1e-16 Score=142.38 Aligned_cols=147 Identities=16% Similarity=0.155 Sum_probs=86.9
Q ss_pred CCCCcEEEEEecCccchhhhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCC
Q 023088 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSS 117 (287)
Q Consensus 38 ~~~~lkIiTwNv~gl~~~~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~ 117 (287)
..++|||+||||++...... ....+.+ ..+||||||||+...... . .+.
T Consensus 40 ~~~~lri~t~NI~~~~~~~~---~~~l~~l-~~~~DiI~LQEv~~~~~~--------~------------------~~~- 88 (263)
T PRK05421 40 TEERLRLLVWNIYKQQRAGW---LSVLKNL-GKDADLVLLQEAQTTPEL--------V------------------QFA- 88 (263)
T ss_pred cCCceeEEEEEccccccccH---HHHHHHh-ccCCCEEEEEecccCcch--------H------------------HHh-
Confidence 45689999999998875422 3445555 899999999999865320 0 010
Q ss_pred CCCCCceEEE--Ec-cCCCceeEEEEEecCCCcceEeecCcccccccCCCCC-EEEEEe--C---CEEEEEEeeCCCCCC
Q 023088 118 PPFKNYQIWW--SL-ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAEF--E---TFYLLNTYAPNNGWK 188 (287)
Q Consensus 118 ~~~~gy~~~~--~~-~~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR-~l~~~~--~---~~~linvY~P~~~~~ 188 (287)
...||+..+ +. ...+++|+|||||.++. .. ..+... ...-..+| ++.+++ + .+.++|+|+++....
T Consensus 89 -~~~~~~~~~~~~~~~~~~~~GvaiLSR~pi~--~~-~~~~~~-~~~~~~~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~ 163 (263)
T PRK05421 89 -TANYLAADQAPAFVLPQHPSGVMTLSKAHPV--YC-CPLRER-EPWLRLPKSALITEYPLPNGRTLLVVNIHAINFSLG 163 (263)
T ss_pred -hcccchHHhccccccCCCccceeEeeecccc--ee-eccCCC-CccccCcceeEEEEEEeCCCCEEEEEEECccccCcC
Confidence 013333222 11 13457899999999632 21 222210 00111334 334443 2 499999999754321
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCC
Q 023088 189 EEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSH 226 (287)
Q Consensus 189 ~~~~~~~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~ 226 (287)
...+..++..|.+++.+. ..|+|+|||||+..
T Consensus 164 -----~~~r~~q~~~l~~~~~~~-~~p~Il~GDFN~~~ 195 (263)
T PRK05421 164 -----VDVYSKQLEPIGDQIAHH-SGPVILAGDFNTWS 195 (263)
T ss_pred -----hHHHHHHHHHHHHHHHhC-CCCEEEEcccccCc
Confidence 122445667777777653 57999999999743
No 7
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=99.66 E-value=4.6e-16 Score=143.15 Aligned_cols=205 Identities=34% Similarity=0.456 Sum_probs=150.6
Q ss_pred CCcEEEEEecCccchhhhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCC
Q 023088 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPP 119 (287)
Q Consensus 40 ~~lkIiTwNv~gl~~~~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~~~ 119 (287)
-.+.|..|||.+++...+. .-..++.....|++|+|||+..-...+. . . ..
T Consensus 62 ~~~~i~~~~i~~~~~~~~~---~~~~~~~~~l~d~~~~~~t~~~i~~~~~------~------------------~--~~ 112 (335)
T KOG1294|consen 62 KVLNICPWDIAGLEACEKF---SGDPEISSELRDLQCLLETKCTIDSGPC------S------------------H--PT 112 (335)
T ss_pred eEeecCchhhhhhhhhhcc---ccchhccccchhhhhhhhccceeccCcc------e------------------e--cc
Confidence 3468999999999876653 3667778889999999999986432221 0 0 12
Q ss_pred CCCc-eEEEEccC--CCceeEEEEEecCCCcceEeecCcccccccCCCCCEEEEEeCCEEEEEEeeCCCCCCCchhhHHH
Q 023088 120 FKNY-QIWWSLAD--SKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR 196 (287)
Q Consensus 120 ~~gy-~~~~~~~~--~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l~~~~~~~~linvY~P~~~~~~~~~~~~~ 196 (287)
..|| +.+|..+. .+++|++.+++.. |..+.+++......+++.|++|.++++.+.+++.|+|+...... ..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~--p~~v~~~~~~~~s~h~~~g~~i~~e~e~~~l~~~y~p~~~~~~~--~~~~ 188 (335)
T KOG1294|consen 113 EKGYTHSLLSCASKKDGYSGEIDYSKFK--PLKVHYGFGAMGSDHRPVGRVIIAEFEIFILINTYVPNIGGGLV--NLVY 188 (335)
T ss_pred cCCcccceeecccccCCccceeeeeecc--cceeeecccccCCccCccceEEEEeecceeeccccCcccccccc--hhhh
Confidence 3688 56776543 3578999999874 88888776521246889999999999999999999999876542 3333
Q ss_pred H--HHHHHHHHHHHHhCC-----CCCEEEEecCCCCCCCccccCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHH-HH
Q 023088 197 R--RKWDKRIQEFVLQCS-----GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF-GA 268 (287)
Q Consensus 197 r--~~f~~~L~~~l~~~~-----~~pvIl~GDFN~~~~~~D~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~er~~l-~~ 268 (287)
+ .+|...+...+.+.. ..++++|||.|+.|..+|.+++- +.+......+++|++++|.++ ..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~gd~nvs~~~i~~~~~~----------~~~~~~~~~~~~~t~e~R~~~~~~ 258 (335)
T KOG1294|consen 189 RILDRWDKEIEEKRKKQSSSKNLKAPVVICGDLNVSHEEIDPSKPL----------VSPAGNTLSNAGFTPEERDSFFAE 258 (335)
T ss_pred hhhhhhHHHHHHHhhhccccccccCcceeccccccchhhccccccc----------cccccCCcCCCCCCHHHhhhHHHh
Confidence 4 555566666665532 34799999999999999964331 111222347899999999999 79
Q ss_pred HHHcCCeeeeeeccccCCC
Q 023088 269 ILKEYLIFLCFYELAVMKP 287 (287)
Q Consensus 269 l~~~g~lvD~~R~~~p~~~ 287 (287)
+++.|.++|+||.+||+.+
T Consensus 259 ~~~~~~~iDt~r~~~~~~~ 277 (335)
T KOG1294|consen 259 LLEKGPLIDTYRELHKDQK 277 (335)
T ss_pred hccCCcceeehhhhcCCcc
Confidence 9999999999999999864
No 8
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.51 E-value=2.2e-13 Score=117.87 Aligned_cols=153 Identities=26% Similarity=0.409 Sum_probs=77.3
Q ss_pred EEEecCccchhhh--cCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCCC
Q 023088 45 VTWNANSLLLRVK--NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122 (287)
Q Consensus 45 iTwNv~gl~~~~~--~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~~~~~g 122 (287)
+||||++...+.. .....+.++|..++||||||||+...... . .+...+. ...+
T Consensus 1 ~T~Nv~~~~~~~~~~~~~~~i~~~i~~~~~Dii~LQEv~~~~~~---------~-------------~~~~~~~--~~~~ 56 (249)
T PF03372_consen 1 MTWNVRGWNYRSDNDRKRREIAQWIAELDPDIIALQEVRNDDLS---------E-------------LLEEQLR--GYLG 56 (249)
T ss_dssp EEEEESTHHHHHHHHHHHHHHHHHHHHHT-SEEEEEEEESHHHH---------H-------------HHHHHHH--TCTT
T ss_pred CeEEeCcCcccccchhHHHHHHHHHHhcCCCEEEEecchhhhhh---------h-------------hhhhhcc--cccc
Confidence 7999999532221 01146999999999999999999853110 0 0011222 1133
Q ss_pred ce-EEEEccCC----CceeEEEEEecCCCcceEeecCcccccccCCCCCEEE-----------EE--eCCEEEEEEeeCC
Q 023088 123 YQ-IWWSLADS----KYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVIL-----------AE--FETFYLLNTYAPN 184 (287)
Q Consensus 123 y~-~~~~~~~~----~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l~-----------~~--~~~~~linvY~P~ 184 (287)
+. ..+..... +..|+||++|.++... ....+. .....+..+. +. ...+.|+++|+|+
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~H~~~ 131 (249)
T PF03372_consen 57 YYGSFWPGNSPPSDAGGYGVAILSRSPIFSS-VSYVFS----LFSKPGIRIFRRSSKSKGIVPVSINGKPITVVNVHLPS 131 (249)
T ss_dssp HEEEEEETSSSTTCSSSEEEEEEESSCCCEE-EEEEEE----EESSSTTCEEEEEEEEEEEEEEEEETEEEEEEEEETTS
T ss_pred cccceeccccccccccCceEEEEEccccccc-cccccc----cccccccccccccccccccccccccceEEEeeeccccc
Confidence 23 33332222 2479999999964211 111111 0111121110 11 1258899999987
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCCCcc
Q 023088 185 NGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEID 230 (287)
Q Consensus 185 ~~~~~~~~~~~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~~~~D 230 (287)
... .+.....++++.+..........|+|||||||+.+...+
T Consensus 132 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~~~ 173 (249)
T PF03372_consen 132 SND----ERQEQWRELLARIQKIYADNPNEPVIVMGDFNSRPDSRD 173 (249)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHTSSCCEEEEEEE-SS-BSSGG
T ss_pred cch----hhhhhhhhhhhhhhhcccccccceEEEEeecccCCccch
Confidence 432 111112234444444433223347999999999876543
No 9
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.50 E-value=6.1e-13 Score=121.12 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=88.7
Q ss_pred cEEEEEecCccchh------hhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhh
Q 023088 42 LKFVTWNANSLLLR------VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRAL 115 (287)
Q Consensus 42 lkIiTwNv~gl~~~------~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L 115 (287)
||||||||+.+... ...+...+...+...+||||||||+...... ..+ .+.|
T Consensus 1 lkVmtyNv~~l~~~~~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~~~~~--------~~l--------------~~~L 58 (283)
T TIGR03395 1 IKILSHNVYMLSTNLYPNWGQMERADLIASADYIKNQDVVILNEAFDTSAS--------KRL--------------LDNL 58 (283)
T ss_pred CeEEEEEeeeecccccCCccHhHHHHHHHHhhcccCCCEEEEecccchHHH--------HHH--------------HHHH
Confidence 68999999853211 1111256677777889999999999643210 001 1223
Q ss_pred CCCCCCCceEEEE---------------ccCCCceeEEEEEecCCCcceEeecCcccccccC-C-CCCEEEEEeC----C
Q 023088 116 SSPPFKNYQIWWS---------------LADSKYAGTALLVKKCFQPKKVSFSLEKTALKYE-P-DGRVILAEFE----T 174 (287)
Q Consensus 116 ~~~~~~gy~~~~~---------------~~~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d-~-egR~l~~~~~----~ 174 (287)
+ ...+|+..+. ......+|++||||.|+... ....++... ..+ . ...++.+++. .
T Consensus 59 ~--~~yp~~~~~~g~~~~g~~~~~g~~~~~~~~~~G~~iLSr~Pi~~~-~~~~f~~~~-~~d~~~~kg~l~a~i~~~g~~ 134 (283)
T TIGR03395 59 R--EEYPYQTDVIGRSKKGWDKTLGNYSSSALEDGGVAIVSKWPIEEK-IQYIFNKGC-GADNLSNKGFAYVKINKNGKK 134 (283)
T ss_pred H--hhCCceEeecccccccchhccccccccCccCCEEEEEECCCcccc-EEEEccCCC-CCccccCCceEEEEEecCCeE
Confidence 2 1122322111 01123579999999965322 111221000 011 1 1225555553 5
Q ss_pred EEEEEEeeCCCCCCCch-hhHHHHHHHHHHHHHHHHhC---CCCCEEEEecCCCCCCCc
Q 023088 175 FYLLNTYAPNNGWKEEE-NSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEI 229 (287)
Q Consensus 175 ~~linvY~P~~~~~~~~-~~~~~r~~f~~~L~~~l~~~---~~~pvIl~GDFN~~~~~~ 229 (287)
+.|+++|+-........ .....|..++..|.+++.+. .+.|+|||||||+.+.+.
T Consensus 135 ~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~~~~~~pvIl~GDfN~~~~s~ 193 (283)
T TIGR03395 135 FHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKNIPKDETVLIGGDLNVNKGSN 193 (283)
T ss_pred EEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhccCCCCceEEEEeeCCCCCCCH
Confidence 99999999654321000 01234677788888888642 356899999999987653
No 10
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.47 E-value=3e-12 Score=114.47 Aligned_cols=174 Identities=13% Similarity=0.159 Sum_probs=101.8
Q ss_pred CCCCcEEEEEecCccchhhhcCch-hHHHHHhhc-CCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhh
Q 023088 38 KKDPLKFVTWNANSLLLRVKNNWP-EFSNFITTF-DPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRAL 115 (287)
Q Consensus 38 ~~~~lkIiTwNv~gl~~~~~~~~~-~l~~~l~~~-~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L 115 (287)
.-...+++|||+.|......-+|. .+..++... ++||+++||+..-+............. ...+ --+|+++ .|
T Consensus 21 ~~~~~~~~twn~qg~s~~~~~kw~~~v~~l~~~~~~~DIla~QEags~p~~a~~~~~~~~~~-g~~~-~v~ey~w---~l 95 (271)
T PRK15251 21 NLEDYKVATWNLQGSSASTESKWNVNVRQLLSGENPADILMVQEAGSLPSSAVPTGRHVQPG-GVGI-PIDEYTW---NL 95 (271)
T ss_pred ccccceEEEeecCCCCCCChhhhhhhHHHHhcCCCCCCEEEEEecCCCcccccccccccccc-cccc-CcccEEE---Ec
Confidence 345789999999997544333354 688888875 699999999976543200000000000 0000 0001111 12
Q ss_pred CCCCCCCceEEEEcc---CCCceeEEEEEecCCCcceEeecCcccccccCCCCCEEEEEeCCEEEEEEeeCCCCCCCchh
Q 023088 116 SSPPFKNYQIWWSLA---DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEEN 192 (287)
Q Consensus 116 ~~~~~~gy~~~~~~~---~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l~~~~~~~~linvY~P~~~~~~~~~ 192 (287)
......++.++|..+ ..+..|+||+||.+ +.+ .+.++. .......++.++++++.++++|+...+..+
T Consensus 96 ~~~srpgm~YiY~~aiD~~ggr~glAIlSr~~--a~~-~~~l~~---p~~~~Rpilgi~i~~~~ffstH~~a~~~~d--- 166 (271)
T PRK15251 96 GTRSRPNQVYIYYSRVDVGANRVNLAIVSRRR--ADE-VIVLRP---PTVASRPIIGIRIGNDVFFSIHALANGGTD--- 166 (271)
T ss_pred cCccCCCceEEEEecccCCCCceeEEEEeccc--ccc-eEEecC---CCCcccceEEEEecCeEEEEeeecCCCCcc---
Confidence 111124555444433 23567999999995 333 233331 122334478889989999999998874321
Q ss_pred hHHHHHHHHHHHHHHHH-hCCCCCEEEEecCCCCCCCc
Q 023088 193 SFQRRRKWDKRIQEFVL-QCSGKPLIWCGDLNVSHEEI 229 (287)
Q Consensus 193 ~~~~r~~f~~~L~~~l~-~~~~~pvIl~GDFN~~~~~~ 229 (287)
+.+.++.+.++.. .....|++||||||..|++.
T Consensus 167 ----a~aiV~~I~~~f~~~~~~~pw~I~GDFNr~P~sl 200 (271)
T PRK15251 167 ----AGAIVRAVHNFFRPNMRHINWMIAGDFNRSPDRL 200 (271)
T ss_pred ----HHHHHHHHHHHHhhccCCCCEEEeccCCCCCcch
Confidence 3456677777765 33457999999999888765
No 11
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.41 E-value=2.9e-12 Score=113.78 Aligned_cols=159 Identities=19% Similarity=0.261 Sum_probs=91.1
Q ss_pred cEEEEEecCccchh-hhc-CchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCC
Q 023088 42 LKFVTWNANSLLLR-VKN-NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPP 119 (287)
Q Consensus 42 lkIiTwNv~gl~~~-~~~-~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~~~ 119 (287)
++|+||||+.+... .++ ..+.+.+.+.+..+|||||||+........ ..+.++... ....
T Consensus 10 ~~v~TyNih~~~~~~d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r------~~~~~~~~~--------~~~~---- 71 (259)
T COG3568 10 FKVLTYNIHKGFGAFDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHR------DGLLDLPHL--------LGRL---- 71 (259)
T ss_pred eEEEEEEEEEccCccCceecHHHHHHHHHhhccCeeeeecccccccccc------cccchhHHH--------HHHh----
Confidence 89999999865544 221 247899999999999999999986432111 111111110 1111
Q ss_pred CCCceEEEEc------cCCCceeEEEEEecCCCcceEeecCcccccccCCCCC-EEEEEe-----CCEEEEEEeeCCCCC
Q 023088 120 FKNYQIWWSL------ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAEF-----ETFYLLNTYAPNNGW 187 (287)
Q Consensus 120 ~~gy~~~~~~------~~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR-~l~~~~-----~~~~linvY~P~~~~ 187 (287)
.+.++.|+. ...+..|+||||+.++.-+ ....++. ....+.| ++.+++ +++.|+|+|+-...
T Consensus 72 -~~~~~~~~~~~~~a~~~~~~~GnaiLS~~pi~~v-~~~~lp~---~~~~~~Rgal~a~~~~~~g~~l~V~~~HL~l~~- 145 (259)
T COG3568 72 -GLAPYWWSGAAFGAVYGEGQHGNAILSRLPIRDV-ENLALPD---PTGLEPRGALLAEIELPGGKPLRVINAHLGLSE- 145 (259)
T ss_pred -cCCccccchhhhhhhcccceeeeEEEecCcccch-hhccCCC---CCCCCCceeEEEEEEcCCCCEEEEEEEeccccH-
Confidence 122222211 2345789999998753111 1112321 1233566 444443 26999999996332
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCCCccc
Q 023088 188 KEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDV 231 (287)
Q Consensus 188 ~~~~~~~~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~~~~D~ 231 (287)
..|.++++.|...+.-....|+|+|||||+.+.+-++
T Consensus 146 -------~~R~~Q~~~L~~~~~l~~~~p~vl~GDFN~~p~s~~y 182 (259)
T COG3568 146 -------ESRLRQAAALLALAGLPALNPTVLMGDFNNEPGSAEY 182 (259)
T ss_pred -------HHHHHHHHHHHhhccCcccCceEEEccCCCCCCCccc
Confidence 1245566666552211234599999999988877665
No 12
>PTZ00297 pantothenate kinase; Provisional
Probab=99.33 E-value=3.8e-11 Score=129.07 Aligned_cols=167 Identities=14% Similarity=0.165 Sum_probs=87.8
Q ss_pred CCCCcEEEEEecCccchhhh-cCchhHHHHHhh-cCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhh
Q 023088 38 KKDPLKFVTWNANSLLLRVK-NNWPEFSNFITT-FDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRAL 115 (287)
Q Consensus 38 ~~~~lkIiTwNv~gl~~~~~-~~~~~l~~~l~~-~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L 115 (287)
...+|||+||||+.+..... ....++..+|+. .+||||||||+..... ++.- ...+.. + ++. +.+.+
T Consensus 7 ~~~~l~VlTyNv~~~~~~~~~~~~~ri~~~i~~l~~~DIv~lQEvf~~~~-~~~~--~~~~~~----~-~~~---~~~~l 75 (1452)
T PTZ00297 7 GCAQARVLSYNFNILPRGCGGFQHERIETFLASVDAYDVVLLQEVYAASV-LPYF--LQKQLC----F-QKM---LVDEL 75 (1452)
T ss_pred CCCceEEEEEEccccCCCcccccHHHHHHHHHhccCCCEEEEeccccccc-cccc--ccccch----h-hHH---HHHHH
Confidence 44589999999985431111 112678899998 4889999999986531 1100 001100 0 000 01223
Q ss_pred CCCCCCCceEEEE-ccC---C-------CceeEEEEEecCCCcceEeecCcccccccCCCCC-EEE--EEeC-------C
Q 023088 116 SSPPFKNYQIWWS-LAD---S-------KYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VIL--AEFE-------T 174 (287)
Q Consensus 116 ~~~~~~gy~~~~~-~~~---~-------~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR-~l~--~~~~-------~ 174 (287)
+ ..||..+.. ... . ..+|+|||||+||.-. ....++......+.+.| ++. ++++ .
T Consensus 76 ~---~~g~~~~~~~~~~~~~~~~~~~~~~~~G~AILSR~PI~~~-~~~~l~~~~~~~~~~~RG~L~a~I~vp~~~g~~~~ 151 (1452)
T PTZ00297 76 K---ARGFHHYVISKQPSYLTMLRYNVCSDNGLIIASRFPIWQR-GSYTFRNHERGEQSVRRGCLFAEVEVPLAEGGSQR 151 (1452)
T ss_pred H---hcCCceeEeecCccccccccCccccCCEEEEEECCChhhc-eeeecCcccccccccccceEEEEEEccccCCCCce
Confidence 2 147754332 111 1 4579999999965221 12223210000011233 333 3332 4
Q ss_pred EEEEEEeeCCCCCCCchhhHHHHHHHHHHHHHHHHh-----------CCCCCEEEEecCCCC
Q 023088 175 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-----------CSGKPLIWCGDLNVS 225 (287)
Q Consensus 175 ~~linvY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~-----------~~~~pvIl~GDFN~~ 225 (287)
+.++++|+-...... .|.++..++.+++.. ....|+|||||||+.
T Consensus 152 v~v~~tHL~~~~~~~------~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~ 207 (1452)
T PTZ00297 152 IVFFNVHLRQEDSLP------STSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNIN 207 (1452)
T ss_pred EEEEEeCCCCCCCcc------hHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCc
Confidence 999999987553321 133445555555542 145699999999983
No 13
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.29 E-value=5.7e-11 Score=117.32 Aligned_cols=161 Identities=18% Similarity=0.210 Sum_probs=88.1
Q ss_pred CCCCcEEEEEecCccc---h-----------hhhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhh
Q 023088 38 KKDPLKFVTWNANSLL---L-----------RVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKA 103 (287)
Q Consensus 38 ~~~~lkIiTwNv~gl~---~-----------~~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~ 103 (287)
....++||||||..-. . .+..++..|.+.|..++||||||||+....- ++.
T Consensus 251 ~~~~frVmSYNILAd~ya~~dly~ycp~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~~~~~-------------~d~-- 315 (606)
T PLN03144 251 SAGTFTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQNLLREIVGYRADILCLQEVQSDHF-------------EEF-- 315 (606)
T ss_pred CCCCEEEEEeeeccccccCcccccCCCccccCHHHHHHHHHHHHHhcCCCEEEEeecCHHHH-------------HHH--
Confidence 4568999999997421 0 0111126899999999999999999954311 000
Q ss_pred hHHHHHHHHHhhCCCCCCCceEEEEccC--------CCceeEEEEEecC-CCcceE-eecCcc-----ccc------ccC
Q 023088 104 SREEKLILMRALSSPPFKNYQIWWSLAD--------SKYAGTALLVKKC-FQPKKV-SFSLEK-----TAL------KYE 162 (287)
Q Consensus 104 ~~~~~~~~~~~L~~~~~~gy~~~~~~~~--------~~~~GVAIlsr~~-i~p~~~-~~~l~~-----~~~------~~d 162 (287)
+...|. ..||..++.... .+..|+||++|.. |+.+.. ...+.. ... ..+
T Consensus 316 -------~~p~L~---~~GY~Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s~~~~~ 385 (606)
T PLN03144 316 -------FAPELD---KHGYQALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKA 385 (606)
T ss_pred -------HHhhhh---hcCceEEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCccccccccchh
Confidence 012342 268876654321 1245999999886 333221 000100 000 001
Q ss_pred CCCC--------EEEEEeC-------------CEEEEEEeeCCCCCCCchhhHHHHHHHHHHHHHHHHhC---CCCCEEE
Q 023088 163 PDGR--------VILAEFE-------------TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIW 218 (287)
Q Consensus 163 ~egR--------~l~~~~~-------------~~~linvY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~~---~~~pvIl 218 (287)
.-.| ++.++.. .|.|+|+|+-...... ..|..+...|.+.+++. .+.|+|+
T Consensus 386 ~l~Rl~kdNVAliv~Le~k~~~~~~~~~~~~~~l~VaNTHL~~~p~~~-----dvRl~Q~~~Ll~~l~~~~~~~~~PvIl 460 (606)
T PLN03144 386 ALNRLLKDNVALIVVLEAKFGNQGADNGGKRQLLCVANTHIHANQELK-----DVKLWQVHTLLKGLEKIAASADIPMLV 460 (606)
T ss_pred hhhhhccCcEEEEEEEEEecccccccCCCCccEEEEEEeeeccCCccc-----hhHHHHHHHHHHHHHHHhhcCCCceEE
Confidence 1112 1222221 2789999984332211 12444445555555542 4679999
Q ss_pred EecCCCCCCC
Q 023088 219 CGDLNVSHEE 228 (287)
Q Consensus 219 ~GDFN~~~~~ 228 (287)
|||||+.+.+
T Consensus 461 cGDFNS~P~S 470 (606)
T PLN03144 461 CGDFNSVPGS 470 (606)
T ss_pred eccCCCCCCC
Confidence 9999998865
No 14
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.23 E-value=2.1e-11 Score=111.17 Aligned_cols=165 Identities=17% Similarity=0.164 Sum_probs=89.8
Q ss_pred CCCCcEEEEEecCccchhhh--c-CchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHh
Q 023088 38 KKDPLKFVTWNANSLLLRVK--N-NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRA 114 (287)
Q Consensus 38 ~~~~lkIiTwNv~gl~~~~~--~-~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~ 114 (287)
..-.|||+|.|++|+.-..+ + +...+.+++.+...||+.|||++...+ + +.+...
T Consensus 5 ~a~~lriltlN~Wgip~~Sk~R~~Rm~~~g~~l~~E~yDiv~LQEvWs~eD-~---------------------~~L~~~ 62 (422)
T KOG3873|consen 5 LALELRILTLNIWGIPYVSKDRRHRMDAIGDELASEKYDIVSLQEVWSQED-F---------------------EYLQSG 62 (422)
T ss_pred hhheeeeeEeeccccccccchhHHHHHHHhHHHhhcccchhhHHHHHHHHH-H---------------------HHHHHh
Confidence 45689999999999752111 1 125688899999999999999986542 1 112222
Q ss_pred hCCCCCCCceEEEEccCCCceeEEEEEecCCCcc-eEeecCccccc---ccC-CCCCEE---EEEeCC--EEEEEEee--
Q 023088 115 LSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK-KVSFSLEKTAL---KYE-PDGRVI---LAEFET--FYLLNTYA-- 182 (287)
Q Consensus 115 L~~~~~~gy~~~~~~~~~~~~GVAIlsr~~i~p~-~~~~~l~~~~~---~~d-~egR~l---~~~~~~--~~linvY~-- 182 (287)
+. ....|..||.++-- ++|++++||.||... --.+.+++.+. -.| -.|..| .+..++ +.+.|+|+
T Consensus 63 ~s--s~yPysh~FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl~~l~~~g~~v~~yntHLHA 139 (422)
T KOG3873|consen 63 CS--SVYPYSHYFHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGLTVLLVGGRMVNLYNTHLHA 139 (422)
T ss_pred cc--ccCchHHhhhcccc-cCceEEeecCchhhhhhhccccCCccceeeeccccccceeEEEEEeeCCEEeeeeehhccc
Confidence 22 12345434443333 589999999975211 11223332110 001 123333 223344 44444443
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHh--CCCCCEEEEecCCCCCCCc
Q 023088 183 PNNGWKEEENSFQRRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHEEI 229 (287)
Q Consensus 183 P~~~~~~~~~~~~~r~~f~~~L~~~l~~--~~~~pvIl~GDFN~~~~~~ 229 (287)
|-+...+ .=...|..+.=++..+++. ..+.-||+|||||+.|.++
T Consensus 140 eY~rq~D--~YL~HR~~QAwdlaqfi~~t~q~~~vVI~~GDLN~~P~dl 186 (422)
T KOG3873|consen 140 EYDRQND--EYLCHRVAQAWDLAQFIRATRQNADVVILAGDLNMQPQDL 186 (422)
T ss_pred cccccCc--hhhhHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCcccc
Confidence 3333222 1122343333345566654 2577899999999977654
No 15
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.18 E-value=5.3e-10 Score=98.52 Aligned_cols=155 Identities=20% Similarity=0.296 Sum_probs=89.8
Q ss_pred CCCcEEEEEecCccchhh-hcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCC
Q 023088 39 KDPLKFVTWNANSLLLRV-KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSS 117 (287)
Q Consensus 39 ~~~lkIiTwNv~gl~~~~-~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~ 117 (287)
+..+.+++||+.|+..+. ..+..++.++++-++||||||||+-...-. .++++.
T Consensus 97 g~~~S~~~WnidgLdln~l~~RMrAv~H~i~l~sPdiiflQEV~p~~y~------------------------~~~K~~- 151 (349)
T KOG2756|consen 97 GSMFSLITWNIDGLDLNNLSERMRAVCHYLALYSPDVIFLQEVIPPYYS------------------------YLKKRS- 151 (349)
T ss_pred ccEEEEEEeeccccccchHHHHHHHHHHHHHhcCCCEEEEeecCchhhH------------------------HHHHhh-
Confidence 455789999999986431 111268999999999999999999754210 123331
Q ss_pred CCCCCceEEEEccCCCceeEEEEEecCCCcceEeecCcccccccCCCCCEE-EE--EeC--CEEEEEEeeCCCCCCCchh
Q 023088 118 PPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVI-LA--EFE--TFYLLNTYAPNNGWKEEEN 192 (287)
Q Consensus 118 ~~~~gy~~~~~~~~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l-~~--~~~--~~~linvY~P~~~~~~~~~ 192 (287)
..|..++. ....++|.+++.+..+... ....++ ......+|-+ ++ .++ ++.+.+.|+-....+. +.
T Consensus 152 ---s~y~i~~~-~~~~~~~~~~l~~s~~~Vk-s~~~i~---F~NS~M~R~L~I~Ev~v~G~Kl~l~tsHLEStr~h~-P~ 222 (349)
T KOG2756|consen 152 ---SNYEIITG-HEEGYFTAIMLKKSRVKVK-SQEIIP---FPNSKMMRNLLIVEVNVSGNKLCLMTSHLESTRGHA-PE 222 (349)
T ss_pred ---hheeEEEe-ccceeeeeeeeehhhcCcc-ccceec---cCcchhhheeEEEEEeecCceEEEEeccccCCCCCC-hH
Confidence 23444433 3445778888876653211 111111 1123456643 33 343 5888888986654432 11
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCC
Q 023088 193 SFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHE 227 (287)
Q Consensus 193 ~~~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~~ 227 (287)
+-++=..-++...+.|+.+++..||++||.|-...
T Consensus 223 r~~qF~~~~~k~~EaIe~lPnA~ViFGGD~NlrD~ 257 (349)
T KOG2756|consen 223 RMNQFKMVLKKMQEAIESLPNATVIFGGDTNLRDR 257 (349)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEEcCcccchhh
Confidence 11111112344556666678999999999997543
No 16
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=99.11 E-value=3.1e-09 Score=100.93 Aligned_cols=159 Identities=21% Similarity=0.210 Sum_probs=90.6
Q ss_pred CCcEEEEEecCccch--------------h--hhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhh
Q 023088 40 DPLKFVTWNANSLLL--------------R--VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKA 103 (287)
Q Consensus 40 ~~lkIiTwNv~gl~~--------------~--~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~ 103 (287)
-.++||||||-.-.. . +.++...|...|...+|||+||||+...... ..
T Consensus 115 f~ftvmSYNILAQ~l~~~~~r~~~~~s~~~L~W~~R~~~Ll~EL~~~dpDIlCLQEVq~d~~~--------~~------- 179 (495)
T KOG2338|consen 115 FDFTVMSYNILAQDLLRDIRRLYFPESGPALKWLRRSQNLLNELKHYDPDVLCLQEVQEDHYP--------EF------- 179 (495)
T ss_pred cceEEEEehHhHHHHHHHhHHhhccCChhhcchhHHhHHHHHHHhhcCCCeeeehhhhhhhhH--------HH-------
Confidence 489999999953111 0 1112367888999999999999999876431 01
Q ss_pred hHHHHHHHHHhhCCCCCCCceEEEEccC-CCceeEEEEEecC-CCcce---EeecCcc-cccccCCCCCEEEEEe----C
Q 023088 104 SREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKC-FQPKK---VSFSLEK-TALKYEPDGRVILAEF----E 173 (287)
Q Consensus 104 ~~~~~~~~~~~L~~~~~~gy~~~~~~~~-~~~~GVAIlsr~~-i~p~~---~~~~l~~-~~~~~d~egR~l~~~~----~ 173 (287)
.+ ..+ ...||..++-... .+..||||+++.. |+-+. +.+-... .....+.-|-+|.+++ +
T Consensus 180 ----~~---~~~---~~lGy~~~~~r~t~~KthG~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~ 249 (495)
T KOG2338|consen 180 ----WQ---PLL---GKLGYTGFFKRRTGTKTHGVAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDE 249 (495)
T ss_pred ----HH---HHH---hhcCceEEEEeccCCCCceEEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCc
Confidence 11 112 1268986654333 4578999999875 21110 0000000 0011122344555555 1
Q ss_pred ---CEEEEEEeeCCCCCCCchhhHHHHHHHHHHHHHHHHh----C-CCCCEEEEecCCCCCCC
Q 023088 174 ---TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ----C-SGKPLIWCGDLNVSHEE 228 (287)
Q Consensus 174 ---~~~linvY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~----~-~~~pvIl~GDFN~~~~~ 228 (287)
++.|.|+|+=...... ..|.++...|.+.+++ . ..-|+++|||||+.+.+
T Consensus 250 ~sq~ilVanTHLl~np~~~-----~vrL~Q~~iiL~~~~~~~~~~~~~~pi~l~GDfNt~p~~ 307 (495)
T KOG2338|consen 250 SSQGILVANTHLLFNPSRS-----DVRLAQVYIILAELEKMSKSSKSHWPIFLCGDFNTEPDS 307 (495)
T ss_pred ccCceEEEeeeeeecCccc-----chhhHHHHHHHHHHHHHHhhcccCCCeEEecCCCCCCCC
Confidence 6889999874433211 1244444445444443 1 25699999999998865
No 17
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.06 E-value=1.1e-08 Score=92.72 Aligned_cols=160 Identities=15% Similarity=0.134 Sum_probs=81.9
Q ss_pred CCcEEEEEecCccchhhhcCc----hhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhh
Q 023088 40 DPLKFVTWNANSLLLRVKNNW----PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRAL 115 (287)
Q Consensus 40 ~~lkIiTwNv~gl~~~~~~~~----~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L 115 (287)
..|+|+||||+..... +..| ..+.+.|+ +||||+|||+...... .+. .++..|
T Consensus 16 ~~l~I~SfNIr~fgd~-k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~---------~l~-----------~ll~~L 72 (276)
T smart00476 16 ASLRICAFNIQSFGDS-KMSNATLMSIIVKILS--RYDIALVQEVRDSDLS---------AVP-----------KLMDQL 72 (276)
T ss_pred CcEEEEEEECcccCCc-cccHHHHHHHHHHHhc--cCCEEEEEEeecchhH---------HHH-----------HHHHHH
Confidence 4799999999865422 1122 34555555 8999999999864320 111 112233
Q ss_pred CCCCCCCceEEEEccCC--C-ceeEEEEEecC-CCcceEeecCccccc-ccCCCCC-EEEEEe--C-----CEEEEEEee
Q 023088 116 SSPPFKNYQIWWSLADS--K-YAGTALLVKKC-FQPKKVSFSLEKTAL-KYEPDGR-VILAEF--E-----TFYLLNTYA 182 (287)
Q Consensus 116 ~~~~~~gy~~~~~~~~~--~-~~GVAIlsr~~-i~p~~~~~~l~~~~~-~~d~egR-~l~~~~--~-----~~~linvY~ 182 (287)
......+|.++.+.... + .--.|++.|.. ++++. ...++.... ..+.-.| ...+.| . .|.++++|+
T Consensus 73 n~~~~~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~-~~~f~d~~~~~~~~F~ReP~~~~F~~~~~~~~~F~li~~H~ 151 (276)
T smart00476 73 NSDSPNTYSYVSSEPLGRNSYKEQYLFLYRSDLVSVLD-SYLYDDGCECGNDVFSREPFVVKFSSPSTAVKEFVIVPLHT 151 (276)
T ss_pred hhcCCCCceEEecCCCCCCCCCEEEEEEEecceEEEcc-cceecCCCCCccccccccceEEEEEeCCCCCccEEEEEecC
Confidence 21111368766554221 1 23478888875 11111 111210000 0111123 122333 2 599999998
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCCCc
Q 023088 183 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEI 229 (287)
Q Consensus 183 P~~~~~~~~~~~~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~~~~ 229 (287)
-+... .++-...++-+.+..++....++|++||||+..+..
T Consensus 152 ~p~~~------~~e~~aL~~v~~~~~~~~~~~~villGDFNa~~~y~ 192 (276)
T smart00476 152 TPEAA------VAEIDALYDVYLDVRQKWGTEDVIFMGDFNAGCSYV 192 (276)
T ss_pred ChHHH------HHHHHHHHHHHHHHHHhhccCCEEEEccCCCCCCcc
Confidence 66432 111112223233333333678999999999986544
No 18
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.63 E-value=1e-06 Score=81.42 Aligned_cols=165 Identities=17% Similarity=0.183 Sum_probs=87.5
Q ss_pred CcEEEEEecCccc-hhhhcCchhHHHHHhh-------cCCCE--EEEeee-cCCCCCCCCCCccccccchhhhhhHHHHH
Q 023088 41 PLKFVTWNANSLL-LRVKNNWPEFSNFITT-------FDPDV--IALQEV-RMPAAGSKDAPKNHQELKDDTKASREEKL 109 (287)
Q Consensus 41 ~lkIiTwNv~gl~-~~~~~~~~~l~~~l~~-------~~pDI--v~LQEt-~~~~~~~~~~~~~~~~l~d~~~~~~~~~~ 109 (287)
.+-++||||+|.. .+. ..+..||.. ..||| |+|||. ........... ... ...| .+
T Consensus 4 ~v~v~TwNv~~~~~~p~----~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~~~---~~~-~~~W-----~~ 70 (310)
T smart00128 4 KVLVGTWNVGGLKADPK----VDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLETI---AGK-ERLW-----SK 70 (310)
T ss_pred EEEEEEEECCCccCCCh----hhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhhcc---chh-HHHH-----HH
Confidence 4678999999964 222 457777765 67999 669999 32221110000 000 0000 11
Q ss_pred HHHHhhCCCCCCCceEEEEccCCCceeEEEEEecCCCc-ce------EeecCcccccccCCCCCEEEEEeC--CEEEEEE
Q 023088 110 ILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQP-KK------VSFSLEKTALKYEPDGRVILAEFE--TFYLLNT 180 (287)
Q Consensus 110 ~~~~~L~~~~~~gy~~~~~~~~~~~~GVAIlsr~~i~p-~~------~~~~l~~~~~~~d~egR~l~~~~~--~~~linv 180 (287)
.+...|. ....|....+. .-+.-++.|++|..+.+ +. +..++.+ ......+..+.+.+. .+.++++
T Consensus 71 ~i~~~l~--~~~~Y~~v~~~-~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~--~~~nKG~v~i~~~~~~~~~~fv~~ 145 (310)
T smart00128 71 LIESSLN--GDGQYNVLAKV-RLVGILVLVFVKANHLVYIKDVETFTVKTGMGG--LWGNKGAVAVRFKLSDTSFCFVNS 145 (310)
T ss_pred HHHHhcC--CCCceEEEeee-eecceEEEEEEehhhcCccceeEeeeeeccccc--eeecCceEEEEEEEcCcEEEEEee
Confidence 1112331 11345544331 22334678888876421 11 2223321 112344555666665 4999999
Q ss_pred eeCCCCCCCchhhHHHHHHHHHHHHHHHHh--------CCCCCEEEEecCCCCCCC
Q 023088 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQ--------CSGKPLIWCGDLNVSHEE 228 (287)
Q Consensus 181 Y~P~~~~~~~~~~~~~r~~f~~~L~~~l~~--------~~~~pvIl~GDFN~~~~~ 228 (287)
|++++.. ..+.|...+..+...+.- .....+|++||||...+.
T Consensus 146 HL~a~~~-----~~~~R~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~~ 196 (310)
T smart00128 146 HLAAGAS-----NVEQRNQDYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLDS 196 (310)
T ss_pred ccccccc-----hhhhhHHHHHHHHHhcCCCCCccccccccceEEEecCcceeecC
Confidence 9999764 234455555555433310 135789999999987653
No 19
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.46 E-value=3.7e-07 Score=82.91 Aligned_cols=148 Identities=16% Similarity=0.075 Sum_probs=89.1
Q ss_pred CCCCcEEEEEecCccchhhhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCC
Q 023088 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSS 117 (287)
Q Consensus 38 ~~~~lkIiTwNv~gl~~~~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~ 117 (287)
....+++++.|+..-+... ..+...+...++|+|.+||+....... ...++
T Consensus 85 ~~~~~~~l~~N~r~~n~~~----~k~Lsl~~~~~~D~v~~~E~~~~~~~~------------------------~~~l~- 135 (309)
T COG3021 85 DQRLLWNLQKNVRFDNASV----AKLLSLIQQLDADAVTTPEGVQLWTAK------------------------VGALA- 135 (309)
T ss_pred cchhhhhhhhhccccCcCH----HHHHHHHhhhCcchhhhHHHHHHhHhH------------------------HHHHH-
Confidence 4557899999987765544 458888888889999999997654311 01222
Q ss_pred CCCCCceEEEEccCC-CceeEEEEEecCCCcceEeecCcccccccCCCCCEEEEEe----CCEEEEEEeeCCCCCCCchh
Q 023088 118 PPFKNYQIWWSLADS-KYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF----ETFYLLNTYAPNNGWKEEEN 192 (287)
Q Consensus 118 ~~~~gy~~~~~~~~~-~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l~~~~----~~~~linvY~P~~~~~~~~~ 192 (287)
..|..+...... +..|+++++|.+..|.. ..-+ -...+.++.+.+.. ..+.++++|.-+.....
T Consensus 136 ---~~yP~~~~~~~~~~~~~~a~~sr~~~~~~~--~~e~---~~~~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~--- 204 (309)
T COG3021 136 ---AQYPAFILCQHPTGVFTLAILSRRPCCPLT--EAEP---WLRLPKSALATAYPLPDGTELTVVALHAVNFPVGT--- 204 (309)
T ss_pred ---HhCCceeecCCCCCeeeeeecccccccccc--ccCc---cccCCccceeEEEEcCCCCEEEEEeeccccccCCc---
Confidence 345433332222 56799999998511211 1111 11234455554433 25888888876443321
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCCC
Q 023088 193 SFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEE 228 (287)
Q Consensus 193 ~~~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~~~ 228 (287)
..++ +++.+|...+.. ..+|+|++||||+++-+
T Consensus 205 -~~~~-~ql~~l~~~i~~-~~gpvIlaGDfNa~pWS 237 (309)
T COG3021 205 -DPQR-AQLLELGDQIAG-HSGPVILAGDFNAPPWS 237 (309)
T ss_pred -cHHH-HHHHHHHHHHHc-CCCCeEEeecCCCcchh
Confidence 2234 455666666654 46999999999997643
No 20
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=98.39 E-value=1.1e-06 Score=68.75 Aligned_cols=73 Identities=18% Similarity=0.268 Sum_probs=42.9
Q ss_pred EEEEEEeeCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCCCccccCchhhhhhhcCCCCCCCCCCCC
Q 023088 175 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWG 254 (287)
Q Consensus 175 ~~linvY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~~~~D~~~~~~~~~~k~~~~~~~~~~~~~ 254 (287)
++|+|+|.|+... +..|++.|.+++......++||+||||+.+...+.....
T Consensus 1 i~i~~vY~pp~~~---------~~~~~~~l~~~~~~~~~~~~Ii~GDFN~~~~~w~~~~~~------------------- 52 (119)
T PF14529_consen 1 ITIISVYAPPSSE---------REEFFDQLRQLLKNLPPAPIIIGGDFNAHHPNWDSSNTN------------------- 52 (119)
T ss_dssp EEEEEEE--TTS----------CHHHHHHHHHHHHCCTTSSEEEEEE-----GGGT-SCHH-------------------
T ss_pred CEEEEEECCCCcc---------HHHHHHHHHHHHHhCCCCCEEEEeECCCCchhhhhcccc-------------------
Confidence 5799999999861 236788888888765444999999999965443332110
Q ss_pred CCCCCHHHHHHHHHHHHcCCeeeeee
Q 023088 255 QPGFTIAERKRFGAILKEYLIFLCFY 280 (287)
Q Consensus 255 ~~~~~~~er~~l~~l~~~g~lvD~~R 280 (287)
....+.|.++++..+|+|+.+
T Consensus 53 -----~~~~~~l~~~~~~~~l~~~~~ 73 (119)
T PF14529_consen 53 -----SRRGEQLLDWLDSHNLVDLNP 73 (119)
T ss_dssp -----HHHHHHHHHHHHHCTEEE---
T ss_pred -----chhHHHHHHHhhhceeeeeec
Confidence 033456888888888998855
No 21
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=97.82 E-value=7e-05 Score=69.07 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=32.0
Q ss_pred CcEEEEEecCccch----------h---hhcCchhHHHHHhhcCCCEEEEeeecCCC
Q 023088 41 PLKFVTWNANSLLL----------R---VKNNWPEFSNFITTFDPDVIALQEVRMPA 84 (287)
Q Consensus 41 ~lkIiTwNv~gl~~----------~---~~~~~~~l~~~l~~~~pDIv~LQEt~~~~ 84 (287)
.++||||||-.-.- . +..+...|.+.|..++|||+||||+....
T Consensus 30 ~ftimTYN~Laq~y~~r~~y~~s~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~ 86 (378)
T COG5239 30 DFTIMTYNVLAQTYATRKMYPYSGWALKWSYRSRLLLQELLYYNADILCLQEVDAED 86 (378)
T ss_pred eeEEEehhhhhhhhccccccCCchhhhhhHHHHHHHHHHHhccCCceeeeehhhhhH
Confidence 79999999954211 0 11122568888889999999999998754
No 22
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.0043 Score=63.66 Aligned_cols=164 Identities=20% Similarity=0.281 Sum_probs=80.2
Q ss_pred CcEEEEEecCccchhhhcCchhHHHHHhhc-------CCCEEE--EeeecC-CCCCCCCCCccccccchhhhhhHH-HHH
Q 023088 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTF-------DPDVIA--LQEVRM-PAAGSKDAPKNHQELKDDTKASRE-EKL 109 (287)
Q Consensus 41 ~lkIiTwNv~gl~~~~~~~~~~l~~~l~~~-------~pDIv~--LQEt~~-~~~~~~~~~~~~~~l~d~~~~~~~-~~~ 109 (287)
.+-+.||||||. +...+ ..|.+||--. -+||++ +||+-- ...++-. .|+...+- |..
T Consensus 538 ~IfvgTfNvNG~-s~~~k--~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv~---------As~tk~~~Wee~ 605 (1080)
T KOG0566|consen 538 SIFVGTFNVNGR-SAAFK--DDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIVS---------ASTTKRRFWEEK 605 (1080)
T ss_pred EEEEEeeeccCc-cccch--hhHHhhccccccCCcCCcCcEEEEeehhhhhcCccceec---------cChHHHHHHHHH
Confidence 456779999993 32222 5677776544 488765 588742 2222211 11111110 111
Q ss_pred HHHHhhCCCCCCCceEEEEccCCCceeEEEE--EecCCCcc----e---EeecCcccccccCCCCCEEEEEe--C--CEE
Q 023088 110 ILMRALSSPPFKNYQIWWSLADSKYAGTALL--VKKCFQPK----K---VSFSLEKTALKYEPDGRVILAEF--E--TFY 176 (287)
Q Consensus 110 ~~~~~L~~~~~~gy~~~~~~~~~~~~GVAIl--sr~~i~p~----~---~~~~l~~~~~~~d~egR~l~~~~--~--~~~ 176 (287)
+ ..-|.+ .-.+|-..++ .--.||.++ +|....|. + +..|+++ .....| .+.+++ . .|.
T Consensus 606 i-~~~Ln~-~~~kYvlL~s---~QlvGv~L~iF~r~~~~p~Ik~V~~~tkKTGfGG---~tgNKG-AVAIrf~~~~TsfC 676 (1080)
T KOG0566|consen 606 I-LKTLNR-YKNKYVLLRS---EQLVGVCLLLFIRPDHAPYIKDVAGDTKKTGFGG---ATGNKG-AVAIRFVYHATSFC 676 (1080)
T ss_pred H-HHHhcC-CCCceEEEeh---hhhheeeEEEEEcccccchhhhcccceeeccccc---ccCCCc-eEEEEEEeccccEE
Confidence 1 122311 1134444433 123577765 45431111 1 2234443 112233 444554 2 688
Q ss_pred EEEEeeCCCCCCCchhhHHHHHHHHHHHHHHHHh------CCCCCEEEEecCCCCCCCccccC
Q 023088 177 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ------CSGKPLIWCGDLNVSHEEIDVSH 233 (287)
Q Consensus 177 linvY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~------~~~~pvIl~GDFN~~~~~~D~~~ 233 (287)
+++-|+-++.+. .++|..=+..+..-|.= .....++||||||.. ||..+
T Consensus 677 Fv~SHlAAG~sn-----v~ERn~DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYR---I~l~n 731 (1080)
T KOG0566|consen 677 FVCSHLAAGQSN-----VEERNEDYKTIARKLRFPRGRMIFSHDYIFWLGDFNYR---IDLSN 731 (1080)
T ss_pred EEecccccccch-----HhhhhhhHHHHHHhccccCCccccCCceEEEeccccee---ecCCH
Confidence 999999887653 33343333444333321 145789999999974 45554
No 23
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=93.38 E-value=0.062 Score=50.69 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=47.3
Q ss_pred CcEEEEEecCccchh--------------hhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHH
Q 023088 41 PLKFVTWNANSLLLR--------------VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASRE 106 (287)
Q Consensus 41 ~lkIiTwNv~gl~~~--------------~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~ 106 (287)
.++|+|||+....-. ...++..+.+.+...+|||+||||+..-. .+..
T Consensus 19 ~~~v~s~n~l~~~~~~~~~~~~~~~~~~~w~~r~~~~~~ei~~~~ad~icLqev~~~~-~~~~----------------- 80 (361)
T KOG0620|consen 19 TFTVLSYNILSQLYATSKLYMYCPSWALSWEYRRQLLLEEILNYNADILCLQEVDRYH-DFFS----------------- 80 (361)
T ss_pred eEEeechhhhhhhhcccCCCcccchhhccHHHHHHHHHHHHhCCCcceeecchhhHHH-HHcc-----------------
Confidence 889999999653211 00011456777777899999999982111 1110
Q ss_pred HHHHHHHhhCCCCCCCceEEEEcc-------CCCceeEEEEEecC
Q 023088 107 EKLILMRALSSPPFKNYQIWWSLA-------DSKYAGTALLVKKC 144 (287)
Q Consensus 107 ~~~~~~~~L~~~~~~gy~~~~~~~-------~~~~~GVAIlsr~~ 144 (287)
..|. ..||...|..- .++-.|+||+.|.+
T Consensus 81 ------p~l~---~~gY~g~~~~k~~~~~~~~~~~dGcaiffk~s 116 (361)
T KOG0620|consen 81 ------PELE---ASGYSGIFIEKTRMGEVELEKIDGCAIFFKPS 116 (361)
T ss_pred ------chhh---hcCCcceeecccccchhhcccCceeeeeecch
Confidence 1121 25898776641 33467999998875
No 24
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=83.63 E-value=5.3 Score=40.14 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=29.5
Q ss_pred CEEEEEEeeCCCCCCCchhhHHHHHHHHHHHHHHHH--h----------CCCCCEEEEecCCCCCC
Q 023088 174 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL--Q----------CSGKPLIWCGDLNVSHE 227 (287)
Q Consensus 174 ~~~linvY~P~~~~~~~~~~~~~r~~f~~~L~~~l~--~----------~~~~pvIl~GDFN~~~~ 227 (287)
.|.++|.|+.++... .....|.+-+..+...+. . .....+|++||||...+
T Consensus 421 s~cFVn~HLAAg~~~---~~~~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYRId 483 (621)
T PLN03191 421 RLCFVCSHLTSGHKD---GAEQRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYRLN 483 (621)
T ss_pred EEEEEEecccccccc---chHHHHHHHHHHHHhccccCcccccCCCccccccceEEEecCcccccc
Confidence 699999999987532 112233332333322110 0 02468999999998764
No 25
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=81.65 E-value=4 Score=37.44 Aligned_cols=56 Identities=18% Similarity=0.086 Sum_probs=32.4
Q ss_pred CEEEEEEeeCCCCCCCch------hhHHHHHHHHHHHHHHHHh--CCCCCEEEEecCCCCCCCc
Q 023088 174 TFYLLNTYAPNNGWKEEE------NSFQRRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHEEI 229 (287)
Q Consensus 174 ~~~linvY~P~~~~~~~~------~~~~~r~~f~~~L~~~l~~--~~~~pvIl~GDFN~~~~~~ 229 (287)
.|.++|+|+=++.+..+. ..-..|.+-+....+.+.. ....++++.||||...+..
T Consensus 81 ~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~~~~~~lF~fGDfNyRld~~ 144 (356)
T PTZ00312 81 VVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFISPSDPLFIFGDFNVRLDGH 144 (356)
T ss_pred EEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhccCCCCcEEEeccceeeeccc
Confidence 488999998766543211 1112233333333322332 2578999999999877643
No 26
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=77.76 E-value=2.2 Score=42.77 Aligned_cols=38 Identities=29% Similarity=0.482 Sum_probs=26.5
Q ss_pred CcEEEEEecCccchhhhcCchhHHHHHhhcCC-CEEE--Eeeec
Q 023088 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDP-DVIA--LQEVR 81 (287)
Q Consensus 41 ~lkIiTwNv~gl~~~~~~~~~~l~~~l~~~~p-DIv~--LQEt~ 81 (287)
.+-|.||||+|...+.. -.+..||....| ||.+ |||+-
T Consensus 109 rv~v~TWNV~g~~p~~~---l~l~~wl~~~~p~DiyviG~QE~v 149 (621)
T PLN03191 109 RVTIGTWNVAGRLPSED---LEIEDWLSTEEPADIYIIGFQEVV 149 (621)
T ss_pred EEEEEEeecCCCCCccc---CCHHHhccCCCCCCEEEEeeEEec
Confidence 45678999999755432 247888876554 8755 69995
No 27
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=53.35 E-value=27 Score=32.77 Aligned_cols=62 Identities=26% Similarity=0.446 Sum_probs=42.0
Q ss_pred cCCCCCEEEEEeCCEEEEEEeeCCCCCCCchhhHHHHHHHHHHHHHHHHhC--CCCCEEEEecCCCCCCCcc
Q 023088 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLIWCGDLNVSHEEID 230 (287)
Q Consensus 161 ~d~egR~l~~~~~~~~linvY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~~--~~~pvIl~GDFN~~~~~~D 230 (287)
.+.+||+++.+...+.+++||.|...... -..+..|+.-|....+.+ .+.++++ |+.+..+|
T Consensus 9 ~~~~~~~~~~~k~~~~~~~v~~~~~~~e~----~~~~~~~~~~l~~r~~~~~~~g~~~~~----~i~~~~i~ 72 (335)
T KOG1294|consen 9 LDSEGRCVIVDKEMFVLINVYCPRNSPEI----SKRRLRFAKVLHYRVEKLLKQGNRKVL----NICPWDIA 72 (335)
T ss_pred hhccCCeeeeecccccccceeccccCCcc----hhhhhhhhhHHHHHHHHHHHhCCeeEe----ecCchhhh
Confidence 46789999988888999999999876532 112566766665555442 5667776 66555543
No 28
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=45.34 E-value=27 Score=36.05 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhC----CCCCEEEEecCCCCCC
Q 023088 197 RRKWDKRIQEFVLQC----SGKPLIWCGDLNVSHE 227 (287)
Q Consensus 197 r~~f~~~L~~~l~~~----~~~pvIl~GDFN~~~~ 227 (287)
|.+...+|..+++.. .+.+++|.||||.-..
T Consensus 654 R~~~AqaL~~~la~~~~~~~d~~~viLGD~N~y~~ 688 (798)
T COG2374 654 RVRAAQALAAFLATNPTGKADADIVILGDFNDYAF 688 (798)
T ss_pred HHHHHHHHHHHHhhCcccccCCCEEEEeccchhhh
Confidence 556678888998853 4789999999997543
No 29
>PLN02504 nitrilase
Probab=34.86 E-value=69 Score=29.96 Aligned_cols=62 Identities=13% Similarity=0.176 Sum_probs=33.3
Q ss_pred ccCCCCCCCCCCCCCccCCCccCCCCCCcEEEEEecCccchhhhcCchhHHHHHh---hcCCCEEEEeeecCC
Q 023088 14 AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT---TFDPDVIALQEVRMP 83 (287)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkIiTwNv~gl~~~~~~~~~~l~~~l~---~~~pDIv~LQEt~~~ 83 (287)
+..|++.|+-. .+++.......+-++.+++.-...... ...+.++++ +..+|+|+++|+...
T Consensus 5 ~~~~~~~~~~~------~~~~~~~~~~kiAlvQ~~~~~~d~~~n--l~~~~~li~eAa~~gadLIVfPE~~lt 69 (346)
T PLN02504 5 ADMPAVEPEVD------MGADASSSTVRATVVQASTVFYDTPAT--LDKAERLIAEAAAYGSQLVVFPEAFIG 69 (346)
T ss_pred CCCccccCCcc------ccccccCCceEEEEEEcCcccCCHHHH--HHHHHHHHHHHHHCCCeEEEeCccccc
Confidence 34566666544 344444343344456666532221111 134444554 567999999998664
No 30
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=33.09 E-value=23 Score=33.49 Aligned_cols=16 Identities=38% Similarity=0.754 Sum_probs=13.6
Q ss_pred CCCEEEEecCCCCCCC
Q 023088 213 GKPLIWCGDLNVSHEE 228 (287)
Q Consensus 213 ~~pvIl~GDFN~~~~~ 228 (287)
.-|+++|||||+.+..
T Consensus 221 ~~p~l~~gdfNs~p~~ 236 (361)
T KOG0620|consen 221 SFPLLLCGDFNSTPLS 236 (361)
T ss_pred ccceeeeccccCCCCc
Confidence 4789999999998665
No 31
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=29.33 E-value=79 Score=30.71 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=29.8
Q ss_pred CEEEEEEeeCCCCCCCchhhHHHHHHHHHHHHHHHHhC------CCCCEEEEecCCCCCC
Q 023088 174 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC------SGKPLIWCGDLNVSHE 227 (287)
Q Consensus 174 ~~~linvY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~~------~~~pvIl~GDFN~~~~ 227 (287)
++.+++.|+-.+.. ++++|..=+..+..-|.-. ....++++||||..-+
T Consensus 166 ~~cFv~shlaag~~-----N~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNyRVt 220 (460)
T COG5411 166 SFCFVNSHLAAGVN-----NIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNYRVT 220 (460)
T ss_pred CcEEEecchhcccc-----cHHHHHHHHHHHHHheecCCCceecccceEEEecccCceee
Confidence 68888888876653 3444443344443333221 3456999999996544
No 32
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=28.47 E-value=36 Score=30.89 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=18.8
Q ss_pred chhHHHHHhhcCCCEEEEeeec
Q 023088 60 WPEFSNFITTFDPDVIALQEVR 81 (287)
Q Consensus 60 ~~~l~~~l~~~~pDIv~LQEt~ 81 (287)
+..+..+|.+++|||++|+=-.
T Consensus 142 p~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 142 PEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred hHHHHHHHHHhCCCEEEEeCch
Confidence 4789999999999999997543
No 33
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=26.18 E-value=77 Score=29.38 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=34.6
Q ss_pred CEEEEEEeeCCCCCCC-----chhhHH-HHHHHHHHHHHHHHh--CCCCCEEEEecCCCCCCCccc
Q 023088 174 TFYLLNTYAPNNGWKE-----EENSFQ-RRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHEEIDV 231 (287)
Q Consensus 174 ~~~linvY~P~~~~~~-----~~~~~~-~r~~f~~~L~~~l~~--~~~~pvIl~GDFN~~~~~~D~ 231 (287)
.+.++|+|+=+..+.. .+..+. .|.+.++.+...|.+ .....+++.||||....+-+.
T Consensus 170 ~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~~~~~~~~fVfGdfNfrLds~s~ 235 (391)
T KOG1976|consen 170 EFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEEGLRNDAIFVFGDFNFRLDSTSL 235 (391)
T ss_pred eeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhhccCceEEEEecccccccchHHH
Confidence 5889999874433211 011111 244556665555543 244578999999998877554
No 34
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=25.40 E-value=3.1e+02 Score=21.01 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHHH---------cCCeeeee
Q 023088 255 QPGFTIAERKRFGAILK---------EYLIFLCF 279 (287)
Q Consensus 255 ~~~~~~~er~~l~~l~~---------~g~lvD~~ 279 (287)
..+.+.+.|..+..+++ .+.|+|+|
T Consensus 67 ~gs~tee~R~~v~~WL~~~~ev~~v~vs~L~D~w 100 (101)
T PF04320_consen 67 YGSCTEEDRAAVEAWLKARPEVSDVEVSELVDAW 100 (101)
T ss_pred CCCCCHHHHHHHHHHHHhCCCcceEEecceeecc
Confidence 45677788888887775 34588887
No 35
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=24.86 E-value=45 Score=30.44 Aligned_cols=22 Identities=9% Similarity=0.342 Sum_probs=18.6
Q ss_pred chhHHHHHhhcCCCEEEEeeec
Q 023088 60 WPEFSNFITTFDPDVIALQEVR 81 (287)
Q Consensus 60 ~~~l~~~l~~~~pDIv~LQEt~ 81 (287)
+..+..+|.+++|||++|+=-.
T Consensus 143 p~~i~~Ll~~~~PDIlViTGHD 164 (287)
T PF05582_consen 143 PEKIYRLLEEYRPDILVITGHD 164 (287)
T ss_pred hHHHHHHHHHcCCCEEEEeCch
Confidence 4679999999999999997543
No 36
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=23.91 E-value=90 Score=25.68 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCCCEEEEecCCC
Q 023088 199 KWDKRIQEFVLQCSGKPLIWCGDLNV 224 (287)
Q Consensus 199 ~f~~~L~~~l~~~~~~pvIl~GDFN~ 224 (287)
+.++.+.+.+.+.....+|++||+=.
T Consensus 28 ~~~~~l~~~~~~~~~d~lii~GDl~~ 53 (172)
T cd07391 28 DTLERLDRLIEEYGPERLIILGDLKH 53 (172)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 44566777776666788999999853
No 37
>PF00272 Cecropin: Cecropin family; InterPro: IPR000875 Cecropins [, , ] are potent antibacterial proteins that constitute a main part of the cell-free immunity of insects. Cecropins are small proteins of about 35 amino acid residues active against both Gram-positive and Gram-negative bacteria. They seem to exert a lytic action on bacterial membranes. Cecropins isolated from insects other than Hyalophora cecropia (Cecropia moth) have been given various names; bactericidin, lepidopteran, sarcotoxin, etc. All of these peptides are structurally related. Cecropin P1, an intestinal antibacterial peptide from Sus scrofa (Pig), also belongs to this family.; GO: 0005576 extracellular region; PDB: 1F0G_A 1D9M_A 1D9J_A 1D9O_A 1D9P_A 1F0F_A 1D9L_A 1F0D_A 1F0E_A 2LA2_A.
Probab=23.07 E-value=12 Score=22.13 Aligned_cols=7 Identities=86% Similarity=1.303 Sum_probs=3.3
Q ss_pred ccccccc
Q 023088 4 FFKPIEK 10 (287)
Q Consensus 4 ~~~~~~~ 10 (287)
|||+||+
T Consensus 2 ~~KkiE~ 8 (30)
T PF00272_consen 2 FFKKIEK 8 (30)
T ss_dssp HHHHCHH
T ss_pred HHHHHHH
Confidence 4555543
No 38
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=22.24 E-value=1.1e+02 Score=29.04 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=31.3
Q ss_pred CEEEEEEeeCCCCCCCchhhHHHHHHHHHHHHHHHHhC-------------CCCCEEEEecCCCCCCCcc
Q 023088 174 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-------------SGKPLIWCGDLNVSHEEID 230 (287)
Q Consensus 174 ~~~linvY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~~-------------~~~pvIl~GDFN~~~~~~D 230 (287)
.+.+.++|.|......+ .+.-+..-.++.+...+.+. ...++.+|||||+.+.+.+
T Consensus 191 ~~~va~Th~~w~~~~~d-vk~iq~s~l~~~~k~~~~e~~~~d~~~~d~k~~~~~~~l~~gd~ns~~~s~v 259 (378)
T COG5239 191 TPYVANTHLPWDPKYRD-VKLIQCSLLYRELKKVLKEELNDDKEEGDIKSYPEVDILITGDFNSLRASLV 259 (378)
T ss_pred ceeEEeccccccCCCCc-hheehhhHHHHHHHHHhhhcCCcchhccccccCcccccccCCCccceeccee
Confidence 58889999987643222 11112222334444443331 1126799999999887653
Done!