Query 023088
Match_columns 287
No_of_seqs 239 out of 1803
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 16:09:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g91_A MTH0212, exodeoxyribonu 100.0 5.1E-33 1.7E-37 246.9 19.3 195 41-286 3-200 (265)
2 2j63_A AP-endonuclease; base e 100.0 3.4E-31 1.2E-35 254.7 19.9 206 39-285 147-407 (467)
3 1hd7_A DNA-(apurinic or apyrim 100.0 8.9E-30 3E-34 232.8 19.8 197 38-285 58-259 (318)
4 2voa_A AF_EXO, XTHA, exodeoxyr 100.0 4.7E-29 1.6E-33 219.2 21.9 191 42-285 2-194 (257)
5 2o3h_A DNA-(apurinic or apyrim 100.0 8.9E-29 3E-33 221.3 23.4 197 38-285 25-226 (285)
6 2jc5_A Exodeoxyribonuclease; h 100.0 9E-29 3.1E-33 217.1 19.8 194 42-285 2-198 (259)
7 2jc4_A Exodeoxyribonuclease II 100.0 2.8E-28 9.7E-33 213.5 22.3 192 42-285 1-194 (256)
8 1vyb_A ORF2 contains A reverse 100.0 1.9E-27 6.5E-32 205.8 19.4 179 38-285 4-187 (238)
9 1ako_A Exonuclease III; AP-end 99.9 8.3E-27 2.8E-31 205.5 18.8 199 42-285 1-205 (268)
10 2ei9_A Non-LTR retrotransposon 99.9 6.3E-24 2.2E-28 187.3 12.4 162 41-284 7-170 (240)
11 1wdu_A TRAS1 ORF2P; four-layer 99.9 1.8E-20 6.2E-25 164.1 18.3 140 39-227 17-160 (245)
12 4gew_A 5'-tyrosyl-DNA phosphod 99.9 6.5E-21 2.2E-25 177.7 15.3 161 30-228 108-278 (362)
13 4fva_A 5'-tyrosyl-DNA phosphod 99.8 1.3E-19 4.5E-24 157.4 15.3 154 38-229 10-173 (256)
14 3teb_A Endonuclease/exonucleas 99.8 8E-19 2.7E-23 154.1 14.8 170 40-226 2-181 (266)
15 4f1h_A Tyrosyl-DNA phosphodies 99.8 1.4E-18 4.8E-23 148.6 11.4 152 40-229 2-160 (250)
16 4gz1_A Tyrosyl-DNA phosphodies 99.8 2.3E-18 8E-23 149.2 10.5 152 38-228 6-165 (256)
17 3l1w_A Uncharacterized protein 99.7 1.6E-17 5.5E-22 145.7 13.1 148 42-226 1-171 (257)
18 3g6s_A Putative endonuclease/e 99.7 2.6E-16 8.8E-21 138.9 14.5 152 40-226 2-177 (267)
19 1zwx_A SMCL, sphingomyelinase- 99.7 3E-16 1E-20 140.6 13.4 165 38-228 7-202 (301)
20 2ddr_A Sphingomyelin phosphodi 99.7 1.1E-15 3.9E-20 137.0 14.5 170 38-230 6-204 (306)
21 3mpr_A Putative endonuclease/e 99.6 4.2E-15 1.4E-19 133.9 14.4 153 39-226 4-183 (298)
22 3i41_A Beta-hemolysin; beta to 99.6 5E-15 1.7E-19 135.0 13.6 165 38-228 26-221 (317)
23 2f1n_A CDT B, cytolethal diste 99.5 5.6E-14 1.9E-18 123.6 12.7 163 39-229 13-193 (262)
24 1sr4_B CDT B, cytolethal diste 99.5 1.2E-13 4.1E-18 122.4 14.5 168 40-228 3-184 (261)
25 3ngq_A CCR4-NOT transcription 99.4 7E-13 2.4E-17 124.8 13.9 45 39-83 29-87 (398)
26 2a40_B Deoxyribonuclease-1; WA 99.3 4.2E-11 1.4E-15 105.5 17.1 156 42-227 1-174 (260)
27 4b8c_D Glucose-repressible alc 99.0 1E-10 3.4E-15 118.0 2.2 43 40-82 393-449 (727)
28 1i9z_A Synaptojanin, phosphati 98.8 4.8E-08 1.7E-12 90.2 14.6 163 40-226 25-212 (347)
29 2imq_X Salivary nitrophorin; f 98.8 2.9E-09 9.8E-14 95.6 4.1 156 40-227 7-177 (282)
30 2xsw_A 72 kDa inositol polypho 98.8 2.6E-08 8.8E-13 92.3 10.1 152 40-228 26-211 (357)
31 3mtc_A Type II inositol-1,4,5- 98.6 6.2E-07 2.1E-11 81.4 15.1 163 41-229 9-198 (313)
32 4a9c_A Phosphatidylinositol-3, 98.1 9.3E-06 3.2E-10 73.7 9.4 153 41-227 9-197 (316)
33 3p8k_A Hydrolase, carbon-nitro 40.4 19 0.00065 31.0 3.3 50 35-84 14-66 (281)
34 3hkx_A Amidase; alpha-beta-BET 30.0 29 0.00098 29.9 2.7 49 36-84 15-66 (283)
35 2la2_A Cecropin, papiliocin; a 20.4 7.9 0.00027 23.1 -1.9 6 4-9 4-9 (38)
No 1
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=100.00 E-value=5.1e-33 Score=246.90 Aligned_cols=195 Identities=26% Similarity=0.478 Sum_probs=155.2
Q ss_pred CcEEEEEecCccchhhhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCC
Q 023088 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120 (287)
Q Consensus 41 ~lkIiTwNv~gl~~~~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~~~~ 120 (287)
+|||+||||+|++.+.++ .+.++|++++|||||||||+.....++ ..+. ..
T Consensus 3 ~l~i~s~Nv~g~~~~~~~---~l~~~i~~~~~DIv~LQEt~~~~~~~~------------------------~~~~--~~ 53 (265)
T 3g91_A 3 VLKIISWNVNGLRAVHRK---GFLKWFMEEKPDILCLQEIKAAPEQLP------------------------RKLR--HV 53 (265)
T ss_dssp EEEEEEEECSCHHHHHHH---THHHHHHHHCCSEEEEECCCSCGGGSC------------------------HHHH--CC
T ss_pred ccEEEEEEcCCchhhhhh---hHHHHHHhcCCCEEEEEeccccccccC------------------------hhhh--cc
Confidence 599999999999887652 599999999999999999998764332 0111 12
Q ss_pred CCceEEEEcc-CCCceeEEEEEecCCCcceEeecCcccccccCCCCCEEEEEeCCEEEEEEeeCCCCCCCchhhHHHHHH
Q 023088 121 KNYQIWWSLA-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 199 (287)
Q Consensus 121 ~gy~~~~~~~-~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l~~~~~~~~linvY~P~~~~~~~~~~~~~r~~ 199 (287)
.||..++... .++++|||||+|.+ +..+..+++. ...+.+||++.+++..+.|+|+|+|++... ..++.+|.+
T Consensus 54 ~gy~~~~~~~~~~~~~Gvail~k~~--~~~~~~~~~~--~~~d~~gr~i~~~~~~~~i~~vy~p~~~~~--~~~~~~r~~ 127 (265)
T 3g91_A 54 EGYRSFFTPAERKGYSGVAMYTKVP--PSSLREGFGV--ERFDTEGRIQIADFDDFLLYNIYFPNGAMS--EERLKYKLE 127 (265)
T ss_dssp TTCEEEEECBSSTTSCCEEEEESSC--CSEEECCCSC--HHHHSBSCEEEEECSSCEEEEEECCCCTTC--HHHHHHHHH
T ss_pred cCCcEEEccCCCCCcCEEEEEEecC--hHHhccCCCC--cccCCcCCEEEEEeCCEEEEEEEecCCCCC--chhHHHHHH
Confidence 6998777654 34578999999986 4455554431 235679999999999999999999998863 357778899
Q ss_pred HHHHHHHHHHhC--CCCCEEEEecCCCCCCCccccCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeee
Q 023088 200 WDKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFL 277 (287)
Q Consensus 200 f~~~L~~~l~~~--~~~pvIl~GDFN~~~~~~D~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~er~~l~~l~~~g~lvD 277 (287)
|++.|.+++.+. .+.++|||||||+.+.++|..++.. +.+.+++++.+|.+|+.+++.| |+|
T Consensus 128 ~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~g-l~D 191 (265)
T 3g91_A 128 FYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKE---------------NSNVSGFLPVERAWIDKFIENG-YVD 191 (265)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSCTGG---------------GTTSTTSCHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHHcCCCCEEEECccccCCchhhccCHhh---------------cCCCCccCHHHHHHHHHHHhcC-cEE
Confidence 999999988764 3689999999999999999987641 2367899999999999999656 999
Q ss_pred eeeccccCC
Q 023088 278 CFYELAVMK 286 (287)
Q Consensus 278 ~~R~~~p~~ 286 (287)
+||.+||..
T Consensus 192 ~~r~~~p~~ 200 (265)
T 3g91_A 192 TFRMFNSDP 200 (265)
T ss_dssp THHHHCCCS
T ss_pred eeHhhCCCC
Confidence 999999864
No 2
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.97 E-value=3.4e-31 Score=254.68 Aligned_cols=206 Identities=24% Similarity=0.330 Sum_probs=149.2
Q ss_pred CCCcEEEEEecCccchhhhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCC
Q 023088 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118 (287)
Q Consensus 39 ~~~lkIiTwNv~gl~~~~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~~ 118 (287)
...|||+||||+|++...++.+..+.++|++++|||||||||+.....++ + ...|+
T Consensus 147 ~~~LKI~TwNVnGl~~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~----------~------------~~~la-- 202 (467)
T 2j63_A 147 SRMYKFITWNVAGLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDEAD----------A------------NATLG-- 202 (467)
T ss_dssp TTEEEEEEEECSCHHHHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHH----------H------------HHTSS--
T ss_pred CCCeEEEEEEcCCCcccccccHHHHHHHHHHcCCCEEEEEecccchhccc----------h------------HHHHh--
Confidence 45799999999999876653235799999999999999999997653211 0 01132
Q ss_pred CCCCceEEEEc--cCCCceeEEEEEecCCC--cc--eEeecCccc---------------ccccCCCCCEEEEEe-----
Q 023088 119 PFKNYQIWWSL--ADSKYAGTALLVKKCFQ--PK--KVSFSLEKT---------------ALKYEPDGRVILAEF----- 172 (287)
Q Consensus 119 ~~~gy~~~~~~--~~~~~~GVAIlsr~~i~--p~--~~~~~l~~~---------------~~~~d~egR~l~~~~----- 172 (287)
...||+++|.. ...+++|||||+|+++. ++ .+..++... ....|.+||+|.+++
T Consensus 203 ~~~GY~~~~~~~~~~~g~~GVAIlsR~pi~~~~l~~~~~~~~~~p~~~~~~~~~gs~~~~~~~~D~egR~I~a~~~~~g~ 282 (467)
T 2j63_A 203 VVDGYSFVDHPCAFKRGYSGTRTYMKNSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAGDEEGRVLTTFLSPDPD 282 (467)
T ss_dssp CCTTEEEEEECCSSSTTSCCEEEEEECCCCCCTSCCEEEESSCCCCC-----------CCCCCCCTTCCEEEEEECSSCC
T ss_pred hcCCceEEEecccCCCCcceEEEEEeCCccccccceeeeeccccccccccccccccccccccccCCCCcEEEEEEEeCCc
Confidence 13689877764 24567899999999742 11 133333210 013567899999988
Q ss_pred -----CCEEEEEEeeCCCCCCCchhhHHHHH-HHHHHHHHHHHhC--------------------CCCCEEEEecCCCCC
Q 023088 173 -----ETFYLLNTYAPNNGWKEEENSFQRRR-KWDKRIQEFVLQC--------------------SGKPLIWCGDLNVSH 226 (287)
Q Consensus 173 -----~~~~linvY~P~~~~~~~~~~~~~r~-~f~~~L~~~l~~~--------------------~~~pvIl~GDFN~~~ 226 (287)
..|+|+|+|+|+++... .++.+|. .|++.|.+++.+. ...|+|||||||+.+
T Consensus 283 ~~~~~~~~~vinvYlP~~~~~~--~r~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~~~~~pvIL~GDFN~~p 360 (467)
T 2j63_A 283 SASSSSRIALVNTYVANSGMGL--TRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAE 360 (467)
T ss_dssp C----CCEEEEEEECCCCCTTS--TTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCC
T ss_pred ccccCceEEEEEEECCCCCcch--HHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhcccccCCcEEEeccccCCC
Confidence 56999999999987532 4566665 3556676666542 257999999999999
Q ss_pred CCccccC---chhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeeeeeeccccC
Q 023088 227 EEIDVSH---PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFYELAVM 285 (287)
Q Consensus 227 ~~~D~~~---~~~~~~~k~~~~~~~~~~~~~~~~~~~~er~~l~~l~~~g~lvD~~R~~~p~ 285 (287)
.++|+.+ +.. +.+.++|+++||.+|.+++...+|+|+||.+||.
T Consensus 361 ~~~D~~~~~~~~~---------------~~~~~gf~~~er~~~~~lL~~~gL~DafR~~~p~ 407 (467)
T 2j63_A 361 RDYDRYYAGTFKS---------------MQECSGFAPEERMSFRETMQRTNSVDIFRQLYPQ 407 (467)
T ss_dssp STTSBCCCSCHHH---------------HTTSTTSCHHHHHHHHHHHHHTTEEEHHHHHCTT
T ss_pred chhhhccccchhh---------------cccccccCHHHHHHHHHHHhhCCCEEehHhhCCC
Confidence 9999887 431 1356889999999999999766699999999984
No 3
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.97 E-value=8.9e-30 Score=232.78 Aligned_cols=197 Identities=33% Similarity=0.611 Sum_probs=144.1
Q ss_pred CCCCcEEEEEecCccchhhhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCC
Q 023088 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSS 117 (287)
Q Consensus 38 ~~~~lkIiTwNv~gl~~~~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~ 117 (287)
....|||+||||+|++...++ .+.++|++++|||||||||+.....+. ..|.
T Consensus 58 ~~~~lrv~t~Nv~g~~~~~~~---~i~~~i~~~~~DIi~LQE~~~~~~~~~------------------------~~l~- 109 (318)
T 1hd7_A 58 KPATLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETKCSENKLP------------------------AELQ- 109 (318)
T ss_dssp CBCCEEEEEEECSSHHHHHHT---THHHHHHHHCCSEEEEECCCCCC---------------------------------
T ss_pred CCCceEEEEEecCcchhhhhh---hHHHHHHhhCCCEEEEEEccCchhhcc------------------------HHHH-
Confidence 346799999999999866542 499999999999999999987653221 0121
Q ss_pred CCCCCc-eEEEEc-c-CCCceeEEEEEecCCCcceEeecCcccccccCCCCCEEEEEeCCEEEEEEeeCCCCCCCchhhH
Q 023088 118 PPFKNY-QIWWSL-A-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSF 194 (287)
Q Consensus 118 ~~~~gy-~~~~~~-~-~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l~~~~~~~~linvY~P~~~~~~~~~~~ 194 (287)
...|| +.++.. . ..+++|||||+|.+ ++.+..+++. ...+.++|++.+++..+.|+|+|+|+.... ..++
T Consensus 110 -~~~gy~~~~~~~~~~~~g~~Gvailsr~~--~~~~~~~~~~--~~~~~~~r~l~~~~~~~~v~~vh~p~~~~~--~~~~ 182 (318)
T 1hd7_A 110 -ELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGD--EEHDQEGRVIVAEFDSFVLVTAYVPNAGRG--LVRL 182 (318)
T ss_dssp ----CCCEEEEECC-----CCCEEEEESSC--CSEEEESCSC--GGGSSSSCEEEEECSSCEEEEEECCCCCGG--GTTH
T ss_pred -hcCCCceEEEecCCCCCccceEEEEEcCC--ceeEEecCCC--cccCCCCcEEEEEcCCEEEEEEEcCCCCCc--cccH
Confidence 12688 666664 2 23467999999996 4445444431 235678999999999999999999987643 2356
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEecCCCCCCCccccCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHc
Q 023088 195 QRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF-GAILKE 272 (287)
Q Consensus 195 ~~r~~f~~~L~~~l~~~-~~~pvIl~GDFN~~~~~~D~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~er~~l-~~l~~~ 272 (287)
+.|.+|++.|..++.+. ...|+|||||||+.+.++|.+++.. +.+..+|++.++.+| ..+++.
T Consensus 183 ~~r~~~~~~l~~~l~~~~~~~pvIl~GDFN~~~~~~D~~~~~~---------------~~~~~g~~~~~~~~~~~~ll~~ 247 (318)
T 1hd7_A 183 EYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------------NKKNAGFTPQERQGFGELLQAV 247 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCEEEEEECSCCCSGGGBSCHHH---------------HTTSTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcccCCCEEEEeeCCCCChhhhccChhh---------------cCCCCCcCHHHHHHHHHHHhhC
Confidence 66778888888887653 2489999999999999999876531 124678999999999 999988
Q ss_pred CCeeeeeeccccC
Q 023088 273 YLIFLCFYELAVM 285 (287)
Q Consensus 273 g~lvD~~R~~~p~ 285 (287)
| |+|+||.+||.
T Consensus 248 ~-l~D~~r~~~p~ 259 (318)
T 1hd7_A 248 P-LADSFRHLYPN 259 (318)
T ss_dssp T-CEEHHHHHCTT
T ss_pred C-CEEeehhhCCC
Confidence 5 99999999884
No 4
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.97 E-value=4.7e-29 Score=219.16 Aligned_cols=191 Identities=23% Similarity=0.381 Sum_probs=143.3
Q ss_pred cEEEEEecCccchhhhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 023088 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (287)
Q Consensus 42 lkIiTwNv~gl~~~~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~~~~~ 121 (287)
|||+||||+|++.+. ..+.++|++++|||||||||+.....++ . ..+. ..
T Consensus 2 lrv~t~Nv~g~~~~~----~~i~~~i~~~~~Dii~lQE~~~~~~~~~----------~-------------~~~~---~~ 51 (257)
T 2voa_A 2 LKIATFNVNSIRSRL----HIVIPWLKENKPDILCMQETKVENRKFP----------E-------------ADFH---RI 51 (257)
T ss_dssp EEEEEEECSCGGGTH----HHHHHHHHHHCCSEEEEECCCCCGGGCC----------H-------------HHHH---TT
T ss_pred eEEEEEecCChHHHH----HHHHHHHhhcCCCEEEEEEeecchhhcC----------H-------------HHhh---hC
Confidence 899999999987665 5799999999999999999987543221 0 0121 26
Q ss_pred CceEEEEccCCCceeEEEEEecCCCcceEeecCcccccccCCCCCEEEEEeCCEEEEEEeeCCCCCCCchhhHHHHHHHH
Q 023088 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 201 (287)
Q Consensus 122 gy~~~~~~~~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l~~~~~~~~linvY~P~~~~~~~~~~~~~r~~f~ 201 (287)
||+.++.. ..+++|||||||.++. .+...++. ...+ ++|++.++++.+.|+|+|+|+..... ..++..|.+|+
T Consensus 52 gy~~~~~~-~~~~~G~ailsr~~~~--~~~~~~~~--~~~~-~~r~l~~~~~~~~v~~~h~p~~~~~~-~~~~~~r~~~~ 124 (257)
T 2voa_A 52 GYHVVFSG-SKGRNGVAIASLEEPE--DVSFGLDS--EPKD-EDRLIRAKIAGIDVINTYVPQGFKID-SEKYQYKLQWL 124 (257)
T ss_dssp TCEEEEEE-ETTEEEEEEEESSCCE--EEEESCSS--SSCC-GGGEEEEEETTEEEEEEECCCCSCTT-SHHHHHHHHHH
T ss_pred CCcEEEcC-CCCccEEEEEEccChH--HheecCCC--Cccc-cCcEEEEEECCEEEEEEEeCCCCCCC-cHHHHHHHHHH
Confidence 89877653 4456799999999532 23334432 1234 78999999999999999999876411 13555677888
Q ss_pred HHHHHHHHhC--CCCCEEEEecCCCCCCCccccCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeeeee
Q 023088 202 KRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCF 279 (287)
Q Consensus 202 ~~L~~~l~~~--~~~pvIl~GDFN~~~~~~D~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~er~~l~~l~~~g~lvD~~ 279 (287)
+.|.+++.+. .+.|+|||||||+.+.+.|..++. .+.+..++++.++.++..+++.| |+|+|
T Consensus 125 ~~l~~~~~~~~~~~~p~Il~GDFN~~~~~~d~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~~-l~D~~ 188 (257)
T 2voa_A 125 ERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPD---------------KLKNHVCFHEDARRAYKKILELG-FVDVL 188 (257)
T ss_dssp HHHHHHHHHHCCTTSCEEEEEECSCCCSGGGBSCGG---------------GCTTSTTTCHHHHHHHHHHHTTT-CEEHH
T ss_pred HHHHHHHHHHhcCCCCEEEEeeCCCCCchhhccChh---------------HhCCCCCCCHHHHHHHHHHHHcC-cEeee
Confidence 8888888753 578999999999999988887653 12356789999999999999655 99999
Q ss_pred eccccC
Q 023088 280 YELAVM 285 (287)
Q Consensus 280 R~~~p~ 285 (287)
|..+|.
T Consensus 189 ~~~~p~ 194 (257)
T 2voa_A 189 RKIHPN 194 (257)
T ss_dssp HHHSTT
T ss_pred hhhCCC
Confidence 999885
No 5
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.97 E-value=8.9e-29 Score=221.31 Aligned_cols=197 Identities=33% Similarity=0.619 Sum_probs=147.7
Q ss_pred CCCCcEEEEEecCccchhhhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCC
Q 023088 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSS 117 (287)
Q Consensus 38 ~~~~lkIiTwNv~gl~~~~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~ 117 (287)
....|||+||||+|++...++ .+.++|++++|||||||||+.....+. . .|.
T Consensus 25 ~~~~l~v~t~Ni~~~~~~~~~---~i~~~i~~~~~DIi~LQE~~~~~~~~~----------~--------------~l~- 76 (285)
T 2o3h_A 25 KPATLKIASWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETKCSENKLP----------A--------------ELQ- 76 (285)
T ss_dssp CBCCEEEEEEECSSHHHHHHT---THHHHHHHHCCSEEEEECCCCCTTSCC----------G--------------GGG-
T ss_pred CccceEEEEEecccChhhhhh---hHHHHHHhcCCCEEEEEEeecchhhcc----------H--------------HHH-
Confidence 456899999999998776542 499999999999999999997754321 0 111
Q ss_pred CCCCCc-eEEEEc-c-CCCceeEEEEEecCCCcceEeecCcccccccCCCCCEEEEEeCCEEEEEEeeCCCCCCCchhhH
Q 023088 118 PPFKNY-QIWWSL-A-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSF 194 (287)
Q Consensus 118 ~~~~gy-~~~~~~-~-~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l~~~~~~~~linvY~P~~~~~~~~~~~ 194 (287)
...|| +.++.. . ..+++|||||+|.+ ++.+...++. ...+.++|++.+++..+.|+|+|+|+.... ..++
T Consensus 77 -~~~gy~~~~~~~~~~~~g~~Gvailsr~~--~~~~~~~~~~--~~~~~~~r~l~~~~~~~~v~~~h~p~~~~~--~~~~ 149 (285)
T 2o3h_A 77 -ELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGD--EEHDQEGRVIVAEFDSFVLVTAYVPNAGRG--LVRL 149 (285)
T ss_dssp -GCGGGCEEEEECBC--CCSCCEEEEESSC--CSEEEESCSC--GGGSSBCCEEEEECSSCEEEEEECCCCCGG--GTTH
T ss_pred -hccCCcEEEEecccCCcccceEEEEEccC--hHHeeeccCC--cccCCCCcEEEEEeCCEEEEEEEcCCCCCc--chhH
Confidence 12688 666664 2 23457999999996 3444444431 234678999999998999999999987643 2356
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEecCCCCCCCccccCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHc
Q 023088 195 QRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF-GAILKE 272 (287)
Q Consensus 195 ~~r~~f~~~L~~~l~~~-~~~pvIl~GDFN~~~~~~D~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~er~~l-~~l~~~ 272 (287)
+.|.+|++.|.+++.+. ...|+|||||||+.+.+.|.+++. .+.+..++++.++.+| ..+++.
T Consensus 150 ~~r~~~~~~l~~~l~~~~~~~p~Il~GDFN~~~~~~D~~~~~---------------~~~~~~g~~~~~~~~~~~~~l~~ 214 (285)
T 2o3h_A 150 EYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK---------------GNKKNAGFTPQERQGFGELLQAV 214 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCEEEEEECSCCCSGGGBSCTT---------------TCTTSTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhccCCCEEEEEECCCCCchhhccChh---------------hcCCCCCcCHHHHHHHHHHHhcC
Confidence 66778888888888753 458999999999999888876653 1234578999999999 999998
Q ss_pred CCeeeeeeccccC
Q 023088 273 YLIFLCFYELAVM 285 (287)
Q Consensus 273 g~lvD~~R~~~p~ 285 (287)
| |+|+||.++|.
T Consensus 215 ~-l~D~~~~~~~~ 226 (285)
T 2o3h_A 215 P-LADSFRHLYPN 226 (285)
T ss_dssp T-CEEHHHHHCTT
T ss_pred C-CEEEEEecCCC
Confidence 5 99999999874
No 6
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.96 E-value=9e-29 Score=217.09 Aligned_cols=194 Identities=20% Similarity=0.362 Sum_probs=145.1
Q ss_pred cEEEEEecCccchhhhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 023088 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (287)
Q Consensus 42 lkIiTwNv~gl~~~~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~~~~~ 121 (287)
|||+||||+|++...++ .+.++|++++|||||||||+.....+. ..+. ...
T Consensus 2 l~v~t~Ni~~~~~~~~~---~i~~~i~~~~~DIi~LQE~~~~~~~~~------------------------~~l~--~~~ 52 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKK---GFYEYIAASGADIVCVQELKAQEADLS------------------------ADMK--NPH 52 (259)
T ss_dssp EEEEEEECSSHHHHHHT---THHHHHHHTTCSEEEEECCCCCGGGCC------------------------HHHH--SGG
T ss_pred cEEEEEeeccHHHHHHh---HHHHHHHhcCCCEEEEEEecchhhccC------------------------hhhc--ccc
Confidence 89999999998766542 499999999999999999987653221 0111 125
Q ss_pred CceEEEEc-cCCCceeEEEEEecCCCcceEeecCcccccccCCCCCEEEEEeCCEEEEEEeeCCCCCCCchhhHHHHHHH
Q 023088 122 NYQIWWSL-ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 200 (287)
Q Consensus 122 gy~~~~~~-~~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l~~~~~~~~linvY~P~~~~~~~~~~~~~r~~f 200 (287)
||.+++.. ...+++|||||+|.++ ..+..+++. ...+.++|++.+++..+.|+|+|+|+.... ..+..+|.+|
T Consensus 53 gy~~~~~~~~~~~~~G~ailsr~~~--~~~~~~~~~--~~~~~~~r~~~~~~~~~~v~~~h~~~~~~~--~~r~~~~~~~ 126 (259)
T 2jc5_A 53 GMHGHWHCAEKRGYSGVAVYSKRKP--DNVQIGMGI--EEFDREGRFVRCDFGRLSVISLYLPSGSSA--EERQQVKYRF 126 (259)
T ss_dssp GCEEEEECCSSTTCCCEEEEESSCC--SEEEESCSC--HHHHTTCCEEEEEETTEEEEEEECCCCTTC--HHHHHHHHHH
T ss_pred CCeEEEeccCCCCcceEEEEEecCc--eeEEeCCCC--CccCCCCeEEEEEcCCEEEEEEeccCCCCC--cHHHHHHHHH
Confidence 89877664 3345679999999963 333333431 124568999999999999999999988653 2455566678
Q ss_pred HHHHHHHHHhC--CCCCEEEEecCCCCCCCccccCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeeee
Q 023088 201 DKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLC 278 (287)
Q Consensus 201 ~~~L~~~l~~~--~~~pvIl~GDFN~~~~~~D~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~er~~l~~l~~~g~lvD~ 278 (287)
++.|.+++.+. .+.|+|||||||+.+.+.|..++. .+.+..++++.++.+|..++...+|+|+
T Consensus 127 ~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~~l~d~ 191 (259)
T 2jc5_A 127 LDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWK---------------GNQKNSGFLPEEREWIGKVIHKLGWTDM 191 (259)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEECCCCCSGGGBSCST---------------TCTTSTTSCHHHHHHHHHHHHTTCCEEH
T ss_pred HHHHHHHHHHHHhcCCCEEEEeeCCCCCchhhccChh---------------hcCCCCCcCHHHHHHHHHHhccCCcEEe
Confidence 88888887653 478999999999999988876542 1235678899999999999966669999
Q ss_pred eeccccC
Q 023088 279 FYELAVM 285 (287)
Q Consensus 279 ~R~~~p~ 285 (287)
||..+|.
T Consensus 192 ~~~~~~~ 198 (259)
T 2jc5_A 192 WRTLYPD 198 (259)
T ss_dssp HHHHCTT
T ss_pred eHhhCCC
Confidence 9998884
No 7
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.96 E-value=2.8e-28 Score=213.53 Aligned_cols=192 Identities=26% Similarity=0.430 Sum_probs=144.4
Q ss_pred cEEEEEecCccchhhhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 023088 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (287)
Q Consensus 42 lkIiTwNv~gl~~~~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~~~~~ 121 (287)
|||+||||+|++.+. ..+.++|++++|||||||||+.....+. . ..+. ..
T Consensus 1 lrv~t~Nv~~~~~~~----~~i~~~i~~~~~DIv~LQE~~~~~~~~~----------~-------------~~~~---~~ 50 (256)
T 2jc4_A 1 MKITTWNVNSLNVRL----PQVQNLLADNPPDILVLQELKLDQDKFP----------A-------------AALQ---MM 50 (256)
T ss_dssp CEEEEEECSCHHHHH----HHHHHHHHSSCCSEEEEECCCSCGGGSC----------H-------------HHHH---TT
T ss_pred CEEEEEEcCCcHHHH----HHHHHHHHhcCCCEEEEEeeccchhcCC----------H-------------hHHh---hc
Confidence 799999999997765 5799999999999999999987653211 0 1121 26
Q ss_pred CceEEEEccCCCceeEEEEEecCCCcceEeecCcccccccCCCCCEEEEEeCCEEEEEEeeCCCCCCCchhhHHHHHHHH
Q 023088 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 201 (287)
Q Consensus 122 gy~~~~~~~~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l~~~~~~~~linvY~P~~~~~~~~~~~~~r~~f~ 201 (287)
||++++.. ..+++|||||+|.++ ..+...++. ...+.++|++.++++.+.|+|+|+|+..... ..++..|.+|+
T Consensus 51 gy~~~~~~-~~~~~G~ailsr~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~-~~~~~~r~~~~ 124 (256)
T 2jc4_A 51 GWHCVWSG-QKTYNGVAIVSRSVP--QDVHFGLPA--LPDDPQRRVIAATVSGVRVINVYCVNGEALD-SPKFKYKEQWF 124 (256)
T ss_dssp TCEEEEEC-CSSSCCEEEEESSCC--EEEEESCTT--STTCCSCCEEEEEETTEEEEEEECCCCCSTT-SHHHHHHHHHH
T ss_pred CCeEEECC-CCcceEEEEEECCCh--HHheecCCC--CccCCcCcEEEEEeCCEEEEEEEecCCCCCC-cHhHHHHHHHH
Confidence 89877653 445689999999953 223334442 1245688999999999999999999876421 13455677888
Q ss_pred HHHHHHHHhC--CCCCEEEEecCCCCCCCccccCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeeeee
Q 023088 202 KRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCF 279 (287)
Q Consensus 202 ~~L~~~l~~~--~~~pvIl~GDFN~~~~~~D~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~er~~l~~l~~~g~lvD~~ 279 (287)
+.|.+++.+. ...|+|||||||+.+.+.|..++.. ..+..++++.++++++.+++.| |+|+|
T Consensus 125 ~~l~~~~~~~~~~~~~~il~GDFN~~~~~~d~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~~-l~D~~ 188 (256)
T 2jc4_A 125 AALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEK---------------WHEKIHCSSVERQWFQNLLDLG-LTDSL 188 (256)
T ss_dssp HHHHHHHHHHHTTCSSEEEEEECCCCCSGGGBSSGGG---------------GTTCTTSCHHHHHHHHHHHTTT-CEEHH
T ss_pred HHHHHHHHHHhcCCCCEEEEeECCCCCchhhccChhH---------------hCCCCCcCHHHHHHHHHHHhcC-cEEhh
Confidence 8888888753 5789999999999998888776531 2356788999999999998766 99999
Q ss_pred eccccC
Q 023088 280 YELAVM 285 (287)
Q Consensus 280 R~~~p~ 285 (287)
|.++|.
T Consensus 189 ~~~~~~ 194 (256)
T 2jc4_A 189 RQVHPE 194 (256)
T ss_dssp HHHCCS
T ss_pred hhhCCC
Confidence 999875
No 8
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.95 E-value=1.9e-27 Score=205.82 Aligned_cols=179 Identities=21% Similarity=0.304 Sum_probs=130.5
Q ss_pred CCCCcEEEEEecCccchhhhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCC
Q 023088 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSS 117 (287)
Q Consensus 38 ~~~~lkIiTwNv~gl~~~~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~ 117 (287)
..++|||+||||+|++...++ ..+.++|++++|||||||||+.....+ ..+.
T Consensus 4 ~~~~lri~t~Nv~g~~~~~~~--~~~~~~i~~~~~DIv~LQE~~~~~~~~-------------------------~~l~- 55 (238)
T 1vyb_A 4 SNSHITILTLNINGLNSAIKR--HRLASWIKSQDPSVCCIQETHLTCRDT-------------------------HRLK- 55 (238)
T ss_dssp CCCCEEEEEEECSCCCSHHHH--HHHHHHHHHHCCSEEEEECCCCCTTSG-------------------------GGCC-
T ss_pred CCCcceEEEEecccCCchhhH--HHHHHHHHHcCCCEEEEecccCCCCCc-------------------------hhHh-
Confidence 456899999999999876543 579999999999999999998664321 1121
Q ss_pred CCCCCceE-EEEccCCCceeEEEEEecCCCcceEeecCcccccccCCCCCEEEEEe--C--CEEEEEEeeCCCCCCCchh
Q 023088 118 PPFKNYQI-WWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF--E--TFYLLNTYAPNNGWKEEEN 192 (287)
Q Consensus 118 ~~~~gy~~-~~~~~~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l~~~~--~--~~~linvY~P~~~~~~~~~ 192 (287)
..||.. ++..+..+++|||||+|.++ |+.+.. . ..+.++|++.+++ . .+.|+|+|+|+...
T Consensus 56 --~~~y~~~~~~~~~~~~~Gvail~r~~~-~~~~~~-~-----~~~~~~r~i~~~~~~~~~~~~v~~~y~p~~~~----- 121 (238)
T 1vyb_A 56 --IKGWRKIYQANGKQKKAGVAILVSDKT-DFKPTK-I-----KRDKEGHYIMVKGSIQQEELTILNIYAPNTGA----- 121 (238)
T ss_dssp --CTTCCEEEEECCSSSSCCEEEEECTTC-CCEEEE-E-----EECTTSSEEEEEEEETTEEEEEEEEECCSSSH-----
T ss_pred --hCCCCeEEEccCCCCCceEEEEEeCCC-Cccccc-e-----eEcCCCcEEEEEEEeCCCcEEEEEEecCCCCc-----
Confidence 258865 44444445679999999864 333322 1 2356899888766 2 69999999998752
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCCCccccCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHc
Q 023088 193 SFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272 (287)
Q Consensus 193 ~~~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~~~~D~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~er~~l~~l~~~ 272 (287)
.+|++.+.+.+.+..+.|+|||||||+.+.+.|..+ .++.+.++.+|.++++.
T Consensus 122 -----~~~~~~l~~~l~~~~~~~~Il~GDFN~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~ 174 (238)
T 1vyb_A 122 -----PRFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRST----------------------RQKVNKDTQELNSALHQ 174 (238)
T ss_dssp -----HHHHHHHHHHTTTTCCTTEEEEEECSSCSSGGGBTT----------------------CCCCCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhccCCCEEEEccCCCCCCccccCC----------------------CCCCcHHHHHHHHHHhh
Confidence 135566666666545789999999999887666532 23556778899999977
Q ss_pred CCeeeeeeccccC
Q 023088 273 YLIFLCFYELAVM 285 (287)
Q Consensus 273 g~lvD~~R~~~p~ 285 (287)
.+|+|+||..+|.
T Consensus 175 ~~l~d~~~~~~~~ 187 (238)
T 1vyb_A 175 ADLIDIYRTLHPK 187 (238)
T ss_dssp TTEEEHHHHHCTT
T ss_pred CCCEEhhHhhCCC
Confidence 6799999998875
No 9
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.95 E-value=8.3e-27 Score=205.51 Aligned_cols=199 Identities=23% Similarity=0.338 Sum_probs=140.3
Q ss_pred cEEEEEecCccchhhhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 023088 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (287)
Q Consensus 42 lkIiTwNv~gl~~~~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~~~~~ 121 (287)
|||+||||+|++.+. ..+.++|++++|||||||||+.....+. . ..+. ..
T Consensus 1 lrv~t~Nv~~~~~~~----~~i~~~i~~~~~Dii~LQE~~~~~~~~~----------~-------------~~l~---~~ 50 (268)
T 1ako_A 1 MKFVSFNINGLRARP----HQLEAIVEKHQPDVIGLQETKVHDDMFP----------L-------------EEVA---KL 50 (268)
T ss_dssp CEEEEEECSCGGGCH----HHHHHHHHHHCCSEEEEECCCCCGGGCC----------H-------------HHHH---HT
T ss_pred CEEEEEehhHHHHHH----HHHHHHHHHcCCCEEEEEeccCChhhCC----------H-------------hHhc---cC
Confidence 799999999987644 5799999999999999999987643211 0 0111 15
Q ss_pred CceEEEEccCCCceeEEEEEecCCCcceEeecCcccccccCCCCCEEEEEeC----CEEEEEEeeCCCCCCCchhhHHHH
Q 023088 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE----TFYLLNTYAPNNGWKEEENSFQRR 197 (287)
Q Consensus 122 gy~~~~~~~~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l~~~~~----~~~linvY~P~~~~~~~~~~~~~r 197 (287)
||.+++.. ..+++|||||+|.+ +..+...++. ...+..++++.+++. .+.|+|+|+|+.....+..++..|
T Consensus 51 gy~~~~~~-~~~~~G~ailsr~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r 125 (268)
T 1ako_A 51 GYNVFYHG-QKGHYGVALLTKET--PIAVRRGFPG--DDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAK 125 (268)
T ss_dssp TCEEEEEE-ETTEEEEEEEESSC--CSEEEESSTT--CCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHH
T ss_pred CCcEEEeC-CCCcceEEEEEecC--cceeeeCCCC--cccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHH
Confidence 89876653 44678999999996 3344444431 112345778877763 699999999987643222345567
Q ss_pred HHHHHHHHHHHHhC--CCCCEEEEecCCCCCCCccccCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHcCCe
Q 023088 198 RKWDKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLI 275 (287)
Q Consensus 198 ~~f~~~L~~~l~~~--~~~pvIl~GDFN~~~~~~D~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~er~~l~~l~~~g~l 275 (287)
..|++.|.+++.+. .+.|+|||||||+.+.+.|...... +.+.| ...+..+|++.++.+++.+.+.| |
T Consensus 126 ~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~~~~~~~~--~~~~w-------~~~~~~~~~~~~~~~~~~l~~~g-l 195 (268)
T 1ako_A 126 AQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEE--NRKRW-------LRTGKCSFLPEEREWMDRLMSWG-L 195 (268)
T ss_dssp HHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHH--HHHHH-------HHHTBTTSCHHHHHHHHHHHHTT-E
T ss_pred HHHHHHHHHHHHHhhhCCCCEEEEeECCCCCchhcccCccc--Chhhh-------ccCCCcCcCHHHHHHHHHHhcCC-C
Confidence 78888898888753 5789999999999998888764310 00000 00135678999999999988766 9
Q ss_pred eeeeeccccC
Q 023088 276 FLCFYELAVM 285 (287)
Q Consensus 276 vD~~R~~~p~ 285 (287)
+|+||..+|.
T Consensus 196 ~D~~~~~~~~ 205 (268)
T 1ako_A 196 VDTFRHANPQ 205 (268)
T ss_dssp EEHHHHHSTT
T ss_pred EEeEhhhCCC
Confidence 9999999885
No 10
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.90 E-value=6.3e-24 Score=187.33 Aligned_cols=162 Identities=12% Similarity=0.021 Sum_probs=112.3
Q ss_pred CcEEEEEecCccchhhhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCC
Q 023088 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120 (287)
Q Consensus 41 ~lkIiTwNv~gl~~~~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~~~~ 120 (287)
.|||+||||||++.+. ..+.++|++++|||||||||+..
T Consensus 7 ~mki~s~Nvn~~r~~~----~~l~~~l~~~~~DIl~LQEt~~~------------------------------------- 45 (240)
T 2ei9_A 7 RLRIGQINLGGAEDAT----RELPSIARDLGLDIVLVQEQYSM------------------------------------- 45 (240)
T ss_dssp EEEEEEEECTTCHHHH----HTHHHHHHHHTCSEEEEESCCTT-------------------------------------
T ss_pred cceEEEEecCccHHHH----HHHHHHHHHcCCCEEEeecceEc-------------------------------------
Confidence 5899999999998876 45999999999999999999721
Q ss_pred CCceEEEEccCCCceeEEEEEecCCCcceEeecCcccccccCCCCCEEEEEeCCEEEEEEeeCCCCCCCchhhHHHHHHH
Q 023088 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 200 (287)
Q Consensus 121 ~gy~~~~~~~~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l~~~~~~~~linvY~P~~~~~~~~~~~~~r~~f 200 (287)
.||+ |.. .+++||||+++.+..|+.+...+ .+..++++.+++..++|+|+|+|++... ..+.+|
T Consensus 46 ~gy~--~~~--~~~~gvail~~~~~~~~~~~~~~------~~~~~~~i~i~~~~i~i~svY~P~~~~~------~~~~~~ 109 (240)
T 2ei9_A 46 VGFL--AQC--GAHPKAGVYIRNRVLPCAVLHHL------SSTHITVVHIGGWDLYMVSAYFQYSDPI------DPYLHR 109 (240)
T ss_dssp SSSE--ECC--SSSCSEEEEESSTTSCEEECGGG------CCSSEEEEEETTTTEEEEEEECCTTSCS------HHHHHH
T ss_pred CCce--Eec--cCCCCEEEEEecCCcceeeeccc------CCCCEEEEEEeeccEEEEEEEcCCCCch------hHHHHH
Confidence 3676 322 24689999999753354332221 2345567777777899999999998642 235566
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCCCCCCccccCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeeeeee
Q 023088 201 DKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEYLIFLCFY 280 (287)
Q Consensus 201 ~~~L~~~l~~~~~~pvIl~GDFN~~~~~~D~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~er~~l~~l~~~g~lvD~~R 280 (287)
++.|...+ .+.++|||||||+++.. +++.. ...++++.||.+..+.+. + ++|++|
T Consensus 110 l~~l~~~~---~~~~~Ii~GDfN~~~~~---w~~~~-----------------~~~~~~~~~r~~~~~~l~-~-~~d~~~ 164 (240)
T 2ei9_A 110 LGNILDRL---RGARVVICADTNAHSPL---WHSLP-----------------RHYVGRGQEVADRRAKME-D-FIGARR 164 (240)
T ss_dssp HHHHHHHT---TTSCEEEEEECCCCCGG---GTCCH-----------------HHHSSSCHHHHHHHHHHH-H-HHHHTT
T ss_pred HHHHHHhc---CCCcEEEEEeccccccc---ccCCC-----------------CCCCCcchhhHHHHHHHH-H-HHHhcC
Confidence 66664433 35799999999998742 22211 111566677766666664 3 788888
Q ss_pred --cccc
Q 023088 281 --ELAV 284 (287)
Q Consensus 281 --~~~p 284 (287)
.+||
T Consensus 165 l~~~~~ 170 (240)
T 2ei9_A 165 LVVHNA 170 (240)
T ss_dssp CEECCC
T ss_pred CEecCC
Confidence 4576
No 11
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.86 E-value=1.8e-20 Score=164.14 Aligned_cols=140 Identities=18% Similarity=0.173 Sum_probs=91.9
Q ss_pred CCCcEEEEEecCccchhhhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCC
Q 023088 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118 (287)
Q Consensus 39 ~~~lkIiTwNv~gl~~~~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~~ 118 (287)
.+.|||+||||+|++... ..+.++|++++|||||||||+...... +.
T Consensus 17 ~~~lri~s~Nv~~~~~~~----~~l~~~i~~~~~DIv~lQE~~~~~~~~---------------------------~~-- 63 (245)
T 1wdu_A 17 GPPYRVLQANLQRKKLAT----AELAIEAATRKAAIALIQEPYVGGAKS---------------------------MK-- 63 (245)
T ss_dssp -CCEEEEEEECTTCHHHH----HHHHHHHHHHTCSEEEEESCCC---------------------------------C--
T ss_pred CcceeeeeeeccccHHHH----HHHHHHHhhcCCCEEEEEcccccCCcc---------------------------cc--
Confidence 457999999999987654 579999999999999999999764321 10
Q ss_pred CCCCceEEEEcc-CCCceeEEEEEecCCCcceEeecCcccccccCCCCC-EEEEEeC--CEEEEEEeeCCCCCCCchhhH
Q 023088 119 PFKNYQIWWSLA-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAEFE--TFYLLNTYAPNNGWKEEENSF 194 (287)
Q Consensus 119 ~~~gy~~~~~~~-~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR-~l~~~~~--~~~linvY~P~~~~~~~~~~~ 194 (287)
...||.+++... ..+++|||||++.. ++.+. .++ ..+..+. ++.+..+ .++|+|+|+|++...
T Consensus 64 ~~~gy~~~~~~~~~~~~~GvaIl~~~~--~~~~~-~~~----~~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~~------ 130 (245)
T 1wdu_A 64 GFRGVRVFQSTAQGDGTVKAAIAVFDH--DLDVI-QYP----QLTTNNIVVVGIRTRAWEITLVSYYFEPDKPI------ 130 (245)
T ss_dssp CCSSCEEEECCCCTTCCCCEEEEECCS--SCEEE-ECT----TTCCSSEEEEEEECSSCEEEEEEEECCTTSCS------
T ss_pred CCCcceEeccccccCCCCCeEEEEECC--CcceE-Eec----ccccCCEEEEEEEcCCCcEEEEEEEeCCCCCH------
Confidence 125887665432 23467999999752 33221 222 1222232 2334433 699999999987631
Q ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCC
Q 023088 195 QRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHE 227 (287)
Q Consensus 195 ~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~~ 227 (287)
..|++.|..++......++|||||||+.+.
T Consensus 131 ---~~~~~~l~~~~~~~~~~~~Ii~GDfN~~~~ 160 (245)
T 1wdu_A 131 ---ESYLEQIKRVERKMGPKRLIFGGDANAKST 160 (245)
T ss_dssp ---HHHHHHHHHHHHTTCSSSEEEEEECCCCCG
T ss_pred ---HHHHHHHHHHHHHhCCCcEEEEeccccCcc
Confidence 245666766666545689999999999764
No 12
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.85 E-value=6.5e-21 Score=177.70 Aligned_cols=161 Identities=24% Similarity=0.254 Sum_probs=96.0
Q ss_pred cCCCccCCCCCCcEEEEEecCccchhhh-cCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHH
Q 023088 30 ETSSEENSKKDPLKFVTWNANSLLLRVK-NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEK 108 (287)
Q Consensus 30 ~~~~~~~~~~~~lkIiTwNv~gl~~~~~-~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~ 108 (287)
.....+...+..|||+||||+|+..... .+...|+++|++++||||||||+..... ..
T Consensus 108 ~~~~~~~~~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~~~---------~~------------ 166 (362)
T 4gew_A 108 AVMTAEDLKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDL---------AP------------ 166 (362)
T ss_dssp -----CTTTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTC---------HH------------
T ss_pred CCCCCCCCCCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEcCChhHh---------HH------------
Confidence 3334445567889999999999854221 1125799999999999999999964321 01
Q ss_pred HHHHHhhCCCCCCCceEEEEccCCCceeEEEEEecCCCcceEeecCcccccccCCCCC-EEEEE--eC--CEEEEEEeeC
Q 023088 109 LILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAE--FE--TFYLLNTYAP 183 (287)
Q Consensus 109 ~~~~~~L~~~~~~gy~~~~~~~~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR-~l~~~--~~--~~~linvY~P 183 (287)
+..+ ..+|..++. +..+++|+|||+|+++ +......++. .....+| ++.+. ++ .+.|+|+|++
T Consensus 167 ---l~~~----~~~y~~~~~-~~~~~~G~aIlsk~~i-~~~~~~~~~~---~~~~~~r~~l~~~i~~~g~~l~v~ntHL~ 234 (362)
T 4gew_A 167 ---IDKL----QSLYKIYYS-NKGCQYYTAILVSKMF-DVEKHDVIHF---QNSGMYRTLQILEGSIGGLKVFLLNTHLE 234 (362)
T ss_dssp ---HHGG----GGTEEEEES-STTSSSEEEEEEETTE-EEEEEEEEEC---TTCSSCCEEEEEEEEETTEEEEEEEEECC
T ss_pred ---HHHh----cCCceEEeC-CCCCCceEEEEEeccC-ccccccccCC---CCCcccceEEEEEEEECCEEEEEEEecCC
Confidence 1222 156766553 4456789999999854 2111111110 1122333 44333 33 5999999998
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHH----hCCCCCEEEEecCCCCCCC
Q 023088 184 NNGWKEEENSFQRRRKWDKRIQEFVL----QCSGKPLIWCGDLNVSHEE 228 (287)
Q Consensus 184 ~~~~~~~~~~~~~r~~f~~~L~~~l~----~~~~~pvIl~GDFN~~~~~ 228 (287)
+.... ...|..++..+..++. ...+.|+|||||||..+.+
T Consensus 235 s~~~~-----~~~R~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~ 278 (362)
T 4gew_A 235 STREH-----RPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEE 278 (362)
T ss_dssp CSGGG-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGG
T ss_pred ccccc-----hhHHHHHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcc
Confidence 86532 2233344444444333 2367899999999987654
No 13
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.82 E-value=1.3e-19 Score=157.35 Aligned_cols=154 Identities=21% Similarity=0.229 Sum_probs=91.6
Q ss_pred CCCCcEEEEEecCccchhhh-cCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhC
Q 023088 38 KKDPLKFVTWNANSLLLRVK-NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALS 116 (287)
Q Consensus 38 ~~~~lkIiTwNv~gl~~~~~-~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~ 116 (287)
++++|||+||||+|+..... .+...+.++|++++||||||||+..... .. +..+
T Consensus 10 ~~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~---------~~---------------l~~~- 64 (256)
T 4fva_A 10 KGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDL---------AP---------------IDKL- 64 (256)
T ss_dssp TTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTC---------HH---------------HHGG-
T ss_pred CCCEEEEEEEecCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEecChhHh---------HH---------------HHHh-
Confidence 57899999999999754221 1125799999999999999999964321 01 1222
Q ss_pred CCCCCCceEEEEccCCCceeEEEEEecCCCcceEeecCcccccccCCCCC-EEEEE--eC--CEEEEEEeeCCCCCCCch
Q 023088 117 SPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAE--FE--TFYLLNTYAPNNGWKEEE 191 (287)
Q Consensus 117 ~~~~~gy~~~~~~~~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR-~l~~~--~~--~~~linvY~P~~~~~~~~ 191 (287)
.+|..++.....+.+|+||++++++ +......++. .....++ ++.+. +. .+.|+|+|+++....
T Consensus 65 ----~~~~~~~~~~~~~~~g~~il~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~--- 133 (256)
T 4fva_A 65 ----QSLYKIYYSNKGCQYYTAILVSKMF-DVEKHDVIHF---QNSGMYRTLQILEGSIGGLKVFLLNTHLESTREH--- 133 (256)
T ss_dssp ----GGTEEEEESSTTSSSEEEEEEETTC-EEEEEEEEEC---TTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG---
T ss_pred ----cCCceEeecCCCCCcceEEEEeecc-cceecccccC---CCCcccceeEEEEEEeCCeEEEEEEecCCCCCcc---
Confidence 2343343444556789999999864 2222222210 0112233 33333 33 599999999876532
Q ss_pred hhHHHHHHHHHHHHH----HHHhCCCCCEEEEecCCCCCCCc
Q 023088 192 NSFQRRRKWDKRIQE----FVLQCSGKPLIWCGDLNVSHEEI 229 (287)
Q Consensus 192 ~~~~~r~~f~~~L~~----~l~~~~~~pvIl~GDFN~~~~~~ 229 (287)
...+..++..+.. ......+.|+|+|||||..+...
T Consensus 134 --~~~~~~q~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~~ 173 (256)
T 4fva_A 134 --RPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEV 173 (256)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECCCCGGGC
T ss_pred --hHHHHHHHHHHHHHhhhhhhccCCCcEEEeccCCCCcchh
Confidence 1112222333332 23334678999999999866443
No 14
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.80 E-value=8e-19 Score=154.06 Aligned_cols=170 Identities=18% Similarity=0.205 Sum_probs=92.6
Q ss_pred CCcEEEEEecCccchhhh-cCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCC
Q 023088 40 DPLKFVTWNANSLLLRVK-NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118 (287)
Q Consensus 40 ~~lkIiTwNv~gl~~~~~-~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~~ 118 (287)
.+|||+||||+++..... .....+.++|++++||||||||+........ ....+..|.+. ..+...|...
T Consensus 2 ~~l~v~t~Ni~~~~~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~----~~~~~~~d~~~-----~~~~~~l~~~ 72 (266)
T 3teb_A 2 NAMKILTVNVHAWLEENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKI----IFDDIREENYA-----WVLLETLQKY 72 (266)
T ss_dssp -CEEEEEEECCTTCSTTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCE----EETTEETTCHH-----HHHHHHHTTT
T ss_pred CceEEEEEecccccCcchhHHHHHHHHHHHhcCCCEEEEEEccccccccc----cccccccccHH-----HHHHHHHHHh
Confidence 579999999987643211 1126789999999999999999975432100 00000011000 0012334311
Q ss_pred CCCCceEEEEc---c-CCCceeEEEEEecCCCcceEeecCcccccccCCCCC-EEEEEe--C--CEEEEEEeeCCCCCCC
Q 023088 119 PFKNYQIWWSL---A-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAEF--E--TFYLLNTYAPNNGWKE 189 (287)
Q Consensus 119 ~~~gy~~~~~~---~-~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR-~l~~~~--~--~~~linvY~P~~~~~~ 189 (287)
...+|..++.. + ..+..|+|||+|.++.. .....++........+.| ++.+.+ . .+.++|+|++......
T Consensus 73 ~~~~y~~~~~~~~~~~~~~~~g~ailsr~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~ 151 (266)
T 3teb_A 73 TDTDYYLHWSNSHIGFGKYNEGVAVITRHKIKA-EDEFYCTFAQSVRTISARRIVSITINYEGQDIEFYSCHMNLPNCET 151 (266)
T ss_dssp CCSCCEEEEEEEEECSTTEEEEEEEEESSCCSE-EEEEECSSCCCTTCTTCCEEEEEEEEETTEEEEEEEEECCCTTCTT
T ss_pred CCCCeEEEEeccccCccccCCeEEEEECceecC-ceeEEeCCCCCCCCcccceEEEEEEEeCCeEEEEEEecCCCccCCh
Confidence 11247765432 2 23356999999986311 112223210001111234 555555 2 6999999998764221
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCC
Q 023088 190 EENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSH 226 (287)
Q Consensus 190 ~~~~~~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~ 226 (287)
+ .|..++..|.+++.+ ..|+|||||||+.+
T Consensus 152 ~-----~r~~q~~~l~~~~~~--~~~~il~GDfN~~~ 181 (266)
T 3teb_A 152 E-----DMGKNIQTILNRTQN--SNLKILMGDFNTDA 181 (266)
T ss_dssp C-----CHHHHHHHHHTSSCS--CCEEEEEEECCCCT
T ss_pred H-----HHHHHHHHHHHHHhc--CCcEEEEeECCCCC
Confidence 1 134455556555543 78999999999864
No 15
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.77 E-value=1.4e-18 Score=148.57 Aligned_cols=152 Identities=18% Similarity=0.249 Sum_probs=92.3
Q ss_pred CCcEEEEEecCccchhh-hcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCC
Q 023088 40 DPLKFVTWNANSLLLRV-KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118 (287)
Q Consensus 40 ~~lkIiTwNv~gl~~~~-~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~~ 118 (287)
.+|||+||||+|+.... ..+...+.++|++++||||||||+.... + ..+...
T Consensus 2 ~~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~------------~-----------~~l~~~---- 54 (250)
T 4f1h_A 2 SKLSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIPAY------------V-----------QYLKKR---- 54 (250)
T ss_dssp CCEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECHHH------------H-----------HHHHHH----
T ss_pred CeEEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH------------H-----------HHHHHh----
Confidence 57999999999875421 1112579999999999999999995321 1 011111
Q ss_pred CCCCceEEEEccCCCceeEEEEEecCCCcceEeecCcccccccCCCCC-EEEEEe--C--CEEEEEEeeCCCCCCCchhh
Q 023088 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAEF--E--TFYLLNTYAPNNGWKEEENS 193 (287)
Q Consensus 119 ~~~gy~~~~~~~~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR-~l~~~~--~--~~~linvY~P~~~~~~~~~~ 193 (287)
.++..++.....+.+|++++++..+ ++.....+.. .....++ ++.+.+ . .+.++++|+++... .
T Consensus 55 --~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~hl~~~~~-----~ 123 (250)
T 4f1h_A 55 --AVSYLFFEGSDDGYFTGIMLRKSRV-KFLESEIICF---PTTQMMRNLLIAQVTFSGQKLYLMTSHLESCKN-----Q 123 (250)
T ss_dssp --CTTEEEEESCSSSSEEEEEEETTTC-EEEEEEEEEC---TTCSSCCEEEEEEEEETTEEEEEEECBCCCSGG-----G
T ss_pred --ccCceeecccccccCceeEEeeccc-cceecccccc---cCccccceEEEEEEecCCcEEEEeccccccccc-----c
Confidence 3344444444445667777777654 3221111110 1123344 333333 3 58999999987653 2
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCEEEEecCCCCCCCc
Q 023088 194 FQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEI 229 (287)
Q Consensus 194 ~~~r~~f~~~L~~~l~~~-~~~pvIl~GDFN~~~~~~ 229 (287)
...+..++..+.+++++. ...|+|||||||+.+.+.
T Consensus 124 ~~~r~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~ 160 (250)
T 4f1h_A 124 SQERTKQLRVVLQKIKEAPEDAIVIFAGDTNLRDAEV 160 (250)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTEEEEEEEECCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCcch
Confidence 234556677777777764 567999999999865443
No 16
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.76 E-value=2.3e-18 Score=149.18 Aligned_cols=152 Identities=22% Similarity=0.267 Sum_probs=88.1
Q ss_pred CCCCcEEEEEecCccchhh-hcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhC
Q 023088 38 KKDPLKFVTWNANSLLLRV-KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALS 116 (287)
Q Consensus 38 ~~~~lkIiTwNv~gl~~~~-~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~ 116 (287)
...+|||+||||+|+.... ..+...+.++|++++||||||||+.... + +.+...+
T Consensus 6 ~~~~l~v~swNi~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~------------~-----------~~l~~~~- 61 (256)
T 4gz1_A 6 DSSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPY------------C-----------AYLKKRA- 61 (256)
T ss_dssp GGGEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECHHH------------H-----------HHHHHHC-
T ss_pred CCCcEEEEEEEcCCCcCcCHHHHHHHHHHHHHHcCCCEEEEEcCCHHH------------H-----------HHHHhhc-
Confidence 4568999999999985421 1112579999999999999999985211 1 0111211
Q ss_pred CCCCCCceEEEEccCCCceeEEEEEecCCCcceE-eecCcccccccCCCCC-EEEEE--eC--CEEEEEEeeCCCCCCCc
Q 023088 117 SPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKV-SFSLEKTALKYEPDGR-VILAE--FE--TFYLLNTYAPNNGWKEE 190 (287)
Q Consensus 117 ~~~~~gy~~~~~~~~~~~~GVAIlsr~~i~p~~~-~~~l~~~~~~~d~egR-~l~~~--~~--~~~linvY~P~~~~~~~ 190 (287)
.+|..+ .... +..|.+++++.+ +... ...... ......++ ++.+. .. .+.|+|+|+++....
T Consensus 62 ----~~~~~~-~~~~-~~~~~~~l~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~-- 129 (256)
T 4gz1_A 62 ----ASYTII-TGNE-EGYFTAILLKKG--RVKFKSQEIIP--FPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREH-- 129 (256)
T ss_dssp ----TTEEEE-ESCS-SSSEEEEEEETT--TEEEEEEEEEE--CTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG--
T ss_pred ----ccccee-eccc-cCCceEEEEEec--cccceeccccc--CCcccccceEEEEEEEeCCEEEEEEeecccccccc--
Confidence 334333 2233 334555666554 2221 111110 01112233 33333 33 599999999876532
Q ss_pred hhhHHHHHHHHHHHHHHHHhC-CCCCEEEEecCCCCCCC
Q 023088 191 ENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEE 228 (287)
Q Consensus 191 ~~~~~~r~~f~~~L~~~l~~~-~~~pvIl~GDFN~~~~~ 228 (287)
...+.+++..+.+.+++. .+.|+|||||||+.+.+
T Consensus 130 ---~~~~~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~ 165 (256)
T 4gz1_A 130 ---SAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQE 165 (256)
T ss_dssp ---HHHHHHHHHHHHHHHHHSCTTSEEEEEEECCCCHHH
T ss_pred ---hhhhhHHHHHHhhhhhhccCcceEEEeCccCCCcch
Confidence 223455666777777654 56799999999986543
No 17
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.74 E-value=1.6e-17 Score=145.66 Aligned_cols=148 Identities=19% Similarity=0.164 Sum_probs=89.6
Q ss_pred cEEEEEecCccchhhh-----cCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhC
Q 023088 42 LKFVTWNANSLLLRVK-----NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALS 116 (287)
Q Consensus 42 lkIiTwNv~gl~~~~~-----~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~ 116 (287)
|||+||||++...... .+...+.++|+.++||||||||+.... + . .+ ...
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~------------~-~----------~l-~~~- 55 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQ------------V-R----------DL-KAY- 55 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHH------------H-H----------HH-HHH-
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHHHcCCCEEEEeCCCHHH------------H-H----------HH-Hhc-
Confidence 7999999998765421 112579999999999999999997321 1 0 01 111
Q ss_pred CCCCCCceEEEEccC--CCceeEEEEEecC-CCcceEe--ecCccccccc-----CCCCCEE-EEEe------CCEEEEE
Q 023088 117 SPPFKNYQIWWSLAD--SKYAGTALLVKKC-FQPKKVS--FSLEKTALKY-----EPDGRVI-LAEF------ETFYLLN 179 (287)
Q Consensus 117 ~~~~~gy~~~~~~~~--~~~~GVAIlsr~~-i~p~~~~--~~l~~~~~~~-----d~egR~l-~~~~------~~~~lin 179 (287)
.||.++..... .+..|+||++|.. + |+... ..++..+... ....|.+ .+.+ ..+.++|
T Consensus 56 ----l~y~~~~~~~~~~~~~~g~ail~r~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~v~~ 130 (257)
T 3l1w_A 56 ----TTFTCLSAEREGDGQGEGLAILYNEQKV-QAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKETTQNTPFLVIN 130 (257)
T ss_dssp ----SSSEEEEEESSSSSCSCEEEEEECTTTE-EEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTCSSCEEEEE
T ss_pred ----CCCcEEEecccCCCCCceEEEEEEcceE-EEEecCeEECcCCCCcccccccccccceeEEEEEEEcCCCCEEEEEE
Confidence 48876654332 3467999999954 2 22111 1121100000 1345643 3443 2699999
Q ss_pred EeeCCCCCCCchhhHHHHHHHHHHHHHHHHh-CCCCCEEEEecCCCCC
Q 023088 180 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSH 226 (287)
Q Consensus 180 vY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~-~~~~pvIl~GDFN~~~ 226 (287)
+|+++.+. ..|..++..|.+++.+ ....|+|||||||+.+
T Consensus 131 ~Hl~~~~~-------~~r~~q~~~l~~~i~~~~~~~pvil~GDfN~~~ 171 (257)
T 3l1w_A 131 VHLDHISA-------HARLAGMTVILEELHDKIAQYPTLLMGDFNAES 171 (257)
T ss_dssp EECCSSCH-------HHHHHHHHHHHHHTHHHHHHSCEEEEEECCCCT
T ss_pred eCCCCCCH-------HHHHHHHHHHHHHHHHHcCCCCEEEEeeCCCCC
Confidence 99987542 2355666777777662 2223999999999854
No 18
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.69 E-value=2.6e-16 Score=138.89 Aligned_cols=152 Identities=21% Similarity=0.181 Sum_probs=90.7
Q ss_pred CCcEEEEEecCccchhh-----hcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHh
Q 023088 40 DPLKFVTWNANSLLLRV-----KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRA 114 (287)
Q Consensus 40 ~~lkIiTwNv~gl~~~~-----~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~ 114 (287)
.+|||+||||++..... ..+...+.++|++.+||||||||+.... + ..+...
T Consensus 2 ~~l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~------------~-----------~~l~~~ 58 (267)
T 3g6s_A 2 TDVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQ------------F-----------QDLRAG 58 (267)
T ss_dssp EEEEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHH------------H-----------HHHHHH
T ss_pred CcEEEEEEEeccCCCCccccCHHHHHHHHHHHHHHcCCCEEEEecCCHHH------------H-----------HHHHHh
Confidence 36999999999876421 1123679999999999999999997321 1 011222
Q ss_pred hCCCCCCCceEEEEccCC---CceeEEEEEecCCCcceEe--ecCcccccc------cCCCCCE-EEEEeC------CEE
Q 023088 115 LSSPPFKNYQIWWSLADS---KYAGTALLVKKCFQPKKVS--FSLEKTALK------YEPDGRV-ILAEFE------TFY 176 (287)
Q Consensus 115 L~~~~~~gy~~~~~~~~~---~~~GVAIlsr~~i~p~~~~--~~l~~~~~~------~d~egR~-l~~~~~------~~~ 176 (287)
| .+|.++...... ...|+|||+|.+--|+... ..++..... .....|. +.+.+. .+.
T Consensus 59 l-----~~y~~~~~~~~~~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~ 133 (267)
T 3g6s_A 59 L-----PEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFM 133 (267)
T ss_dssp C-----TTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEEETTTCCEEE
T ss_pred c-----cCCcEEEecCCCCCcCCceeEEEEEccceEEEecccEecCCCCCccccccccccCcceEEEEEEEEcCCCCEEE
Confidence 2 578765433221 2345999965431132211 112210000 0123453 334332 599
Q ss_pred EEEEeeCCCCCCCchhhHHHHHHHHHHHHHHHHhC-CCCCEEEEecCCCCC
Q 023088 177 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSH 226 (287)
Q Consensus 177 linvY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~~-~~~pvIl~GDFN~~~ 226 (287)
|+|+|++..+. ..|..+...|.+++.+. .+.|+|||||||+.+
T Consensus 134 v~~~Hl~~~~~-------~~R~~q~~~l~~~l~~~~~~~pvIl~GDfN~~~ 177 (267)
T 3g6s_A 134 AVNTHFDHVGE-------EARRQSALLIIRKIKEIVGERPAVVTGDFNVTD 177 (267)
T ss_dssp EEEEECCSSCH-------HHHHHHHHHHHHHHHHHTTTSCEEEEEECSSCT
T ss_pred EEEeCCCCCCH-------HHHHHHHHHHHHHHHHhcCCCCEEEEeECCCCC
Confidence 99999986542 23556666777777653 478999999999854
No 19
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.68 E-value=3e-16 Score=140.62 Aligned_cols=165 Identities=14% Similarity=0.093 Sum_probs=93.0
Q ss_pred CCCCcEEEEEecCccchhh------hcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHH
Q 023088 38 KKDPLKFVTWNANSLLLRV------KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111 (287)
Q Consensus 38 ~~~~lkIiTwNv~gl~~~~------~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~ 111 (287)
...+|||+||||+++.... ..+...+...+...+||||||||+...... .. +
T Consensus 7 ~~~~lrv~t~Ni~~~~~~~~~~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~--------~~--------------l 64 (301)
T 1zwx_A 7 YPGNFKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSAS--------HR--------------L 64 (301)
T ss_dssp CCCSCEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHH--------HH--------------H
T ss_pred CCCceEEEEEECccCCccccCCCCHHHHHHHHHHhhccCCCCEEEEeccccHHHH--------HH--------------H
Confidence 4458999999999873211 000134555667899999999999743210 00 0
Q ss_pred HHhhCCCCCCCceE------------EEEc---cCCCceeEEEEEecCCCcceE-eecCcccccccCCCCC-EEEEEe--
Q 023088 112 MRALSSPPFKNYQI------------WWSL---ADSKYAGTALLVKKCFQPKKV-SFSLEKTALKYEPDGR-VILAEF-- 172 (287)
Q Consensus 112 ~~~L~~~~~~gy~~------------~~~~---~~~~~~GVAIlsr~~i~p~~~-~~~l~~~~~~~d~egR-~l~~~~-- 172 (287)
...|. ...+|++ .+.. ...+.+|+|||||.++. .. ...++..........| ++.+++
T Consensus 65 ~~~l~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~G~ailSr~pi~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (301)
T 1zwx_A 65 LNNLR--EMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIV--EKSQHIFQRGGGADRLSNKGFAYVKIMK 140 (301)
T ss_dssp HHHTT--TTCCEECCCTTSCSTTCSEEEC-----CCBCCCCEEEESSCEE--EEEEEECSCCCGGGGGBCCEEEEEEEEE
T ss_pred HHHHh--hcCCccccccCCccccccccccccccccccCCCEEEEecCCcc--cceEEEecCCCCcccccCCCeEEEEEEE
Confidence 12232 1122321 1110 01235799999999531 11 1122210000011234 555555
Q ss_pred C--CEEEEEEeeCCCCCCCc-hhhHHHHHHHHHHHHHHHHhC---CCCCEEEEecCCCCCCC
Q 023088 173 E--TFYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEE 228 (287)
Q Consensus 173 ~--~~~linvY~P~~~~~~~-~~~~~~r~~f~~~L~~~l~~~---~~~pvIl~GDFN~~~~~ 228 (287)
+ .+.|+|+|+++...... ......|..+++.|.+++.+. .+.|+|||||||+.+.+
T Consensus 141 ~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~ 202 (301)
T 1zwx_A 141 NGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGT 202 (301)
T ss_dssp TTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTS
T ss_pred CCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCc
Confidence 2 59999999987643100 023445777888888888752 45799999999998765
No 20
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.66 E-value=1.1e-15 Score=137.01 Aligned_cols=170 Identities=17% Similarity=0.168 Sum_probs=92.8
Q ss_pred CCCCcEEEEEecCccchhh------hcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHH
Q 023088 38 KKDPLKFVTWNANSLLLRV------KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111 (287)
Q Consensus 38 ~~~~lkIiTwNv~gl~~~~------~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~ 111 (287)
...+|||+||||++++... ..+...+...+...+||||||||+...... .. +
T Consensus 6 ~~~~lrv~t~Ni~~~~~~~~~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~--------~~--------------l 63 (306)
T 2ddr_A 6 QNDTLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSAS--------DR--------------L 63 (306)
T ss_dssp -CCEEEEEEEEEEECCTTTCTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHH--------HH--------------H
T ss_pred CCCEEEEEEEECccCcccccCCCCHHHHHHHHHHHhhccCCCEEEEEeecCHHHH--------HH--------------H
Confidence 3457999999999875210 000134555677889999999999643210 00 0
Q ss_pred HHhhCCC-----------CCCCceEEEEc---cCCCceeEEEEEecCCCcceEeecCcccccccCCCCC-EEEEEe--C-
Q 023088 112 MRALSSP-----------PFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAEF--E- 173 (287)
Q Consensus 112 ~~~L~~~-----------~~~gy~~~~~~---~~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR-~l~~~~--~- 173 (287)
...|... ...||+..+.. ...+.+|+|||||.++... ....++........+.| ++.+++ +
T Consensus 64 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ailSr~pi~~~-~~~~~~~~~~~~~~~~r~~~~~~i~~~g 142 (306)
T 2ddr_A 64 LGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEK-IQYVFAKGCGPDNLSNKGFVYTKIKKND 142 (306)
T ss_dssp HHHHTTTCCEECCCTTSCCSTTSSEEEESCCTTCSSCCCCEEEESSCEEEE-EEEECSCCC----CCCCEEEEEEEEETT
T ss_pred HHHHhhhCCceeeccCcccccccccccccccccCccCCeEEEEECCCcccc-cEEEcCCCCCcchhcCCCeEEEEEEeCC
Confidence 1112100 00133322211 1234579999999853211 11122210000012345 455554 3
Q ss_pred -CEEEEEEeeCCCCCCCc-hhhHHHHHHHHHHHHHHHHhC---CCCCEEEEecCCCCCCCcc
Q 023088 174 -TFYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEID 230 (287)
Q Consensus 174 -~~~linvY~P~~~~~~~-~~~~~~r~~f~~~L~~~l~~~---~~~pvIl~GDFN~~~~~~D 230 (287)
.+.|+|+|+++...... ......|..+++.|.+++.+. .+.|+|||||||+.+...|
T Consensus 143 ~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~~~d 204 (306)
T 2ddr_A 143 RFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAE 204 (306)
T ss_dssp EEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTS
T ss_pred EEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCccccc
Confidence 59999999987642100 013345677788888888753 3579999999999886544
No 21
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=4.2e-15 Score=133.89 Aligned_cols=153 Identities=20% Similarity=0.166 Sum_probs=89.2
Q ss_pred CCCcEEEEEecCccchhhh-------cCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHH
Q 023088 39 KDPLKFVTWNANSLLLRVK-------NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111 (287)
Q Consensus 39 ~~~lkIiTwNv~gl~~~~~-------~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~ 111 (287)
+.+|||+||||+....... .+...+.++|++.+||||||||+.... + + .+
T Consensus 4 ~~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~------------~-~----------~l 60 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLHQ------------L-K----------DM 60 (298)
T ss_dssp CEEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHHH------------H-H----------HH
T ss_pred CCcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHHH------------H-H----------HH
Confidence 4579999999986543211 112679999999999999999996321 1 0 11
Q ss_pred HHhhCCCCCCCceEEEEccCC---CceeEEEEEecCCCcceEee--cCccccccc-----CCCCCE-EEEEeC------C
Q 023088 112 MRALSSPPFKNYQIWWSLADS---KYAGTALLVKKCFQPKKVSF--SLEKTALKY-----EPDGRV-ILAEFE------T 174 (287)
Q Consensus 112 ~~~L~~~~~~gy~~~~~~~~~---~~~GVAIlsr~~i~p~~~~~--~l~~~~~~~-----d~egR~-l~~~~~------~ 174 (287)
.+.| .+|.++...... ...|+|||.+.+--|+.... .++..+... ....|. +.+.+. .
T Consensus 61 ~~~l-----~~y~~~~~~~~~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~~~~~R~~~~~~~~~~~~g~~ 135 (298)
T 3mpr_A 61 KEAL-----PGYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAVLPRICSWGHFKCKDTGFE 135 (298)
T ss_dssp HHHS-----TTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTTCCE
T ss_pred HHhC-----CCCcEEEEecCCCCCCCceeEEEEecCceEEEeccEEEccCCCCccCcccccccCceeEEEEEEEcCCCCE
Confidence 2223 567755332221 23359999443311322111 121100000 013453 334431 5
Q ss_pred EEEEEEeeCCCCCCCchhhHHHHHHHHHHHHHHHHhC---CCCCEEEEecCCCCC
Q 023088 175 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSH 226 (287)
Q Consensus 175 ~~linvY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~~---~~~pvIl~GDFN~~~ 226 (287)
+.|+|+|+++.+. ..|..+...|.+++.+. .+.|+|||||||+.+
T Consensus 136 ~~v~~~Hl~~~~~-------~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~ 183 (298)
T 3mpr_A 136 FLFFNLHMDHIGK-------KARVESAFLVQEKMKELGRGKNLPAILTGDFNVDQ 183 (298)
T ss_dssp EEEEEEECCSSCH-------HHHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSCT
T ss_pred EEEEEecCCCCCH-------HHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Confidence 9999999985431 23556667777777764 468999999999864
No 22
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.61 E-value=5e-15 Score=134.99 Aligned_cols=165 Identities=17% Similarity=0.158 Sum_probs=92.6
Q ss_pred CCCCcEEEEEecCccchh------hhcCchhHHHHHhhcCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHH
Q 023088 38 KKDPLKFVTWNANSLLLR------VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111 (287)
Q Consensus 38 ~~~~lkIiTwNv~gl~~~------~~~~~~~l~~~l~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~ 111 (287)
....|||+||||+++... ...+...+...+...+||||||||+...... .. +
T Consensus 26 ~~~~lrV~T~Ni~~~~~~~~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~--------~~--------------l 83 (317)
T 3i41_A 26 DDTDLKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGAS--------DK--------------L 83 (317)
T ss_dssp --CCCCEEEEEEEECCTTTSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHH--------HH--------------H
T ss_pred CCCceEEEEEecccCccccCCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHH--------HH--------------H
Confidence 457899999999986421 1100134566667789999999999643210 00 1
Q ss_pred HHhhCCCCCCCceEEEEcc-CC--------------CceeEEEEEecCCCcceEeecCcccccccC-CCCC-EEEEEe--
Q 023088 112 MRALSSPPFKNYQIWWSLA-DS--------------KYAGTALLVKKCFQPKKVSFSLEKTALKYE-PDGR-VILAEF-- 172 (287)
Q Consensus 112 ~~~L~~~~~~gy~~~~~~~-~~--------------~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d-~egR-~l~~~~-- 172 (287)
.+.|. ...+|.+.+... .. -.+|++||||.++.... ...++.. ...| ...| ++.+++
T Consensus 84 ~~~L~--~~~py~~~~~g~~~~~~~~~~~~y~~~~~~~~G~~ilSr~Pi~~~~-~~~~~~~-~~~d~~~~r~~~~~~i~~ 159 (317)
T 3i41_A 84 LSNVK--KEYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKI-QHVFKSG-CGFDNDSNKGFVYTKIEK 159 (317)
T ss_dssp HHHTT--TTCCEECCCTTSCSTTCSEEEESCCSSCSBCCCCEEEESSCEEEEE-EEECSCC-CSSGGGBCCEEEEEEEEE
T ss_pred HHHHH--HhCCcccccCCccccCccCcccccccccccCCccEEEeCCCCccce-eEECCCC-CCcccccCcceEEEEEEE
Confidence 23343 112333211110 00 01599999999642211 1122210 0011 1333 344443
Q ss_pred C--CEEEEEEeeCCCCCCCc-hhhHHHHHHHHHHHHHHHHhC---CCCCEEEEecCCCCCCC
Q 023088 173 E--TFYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEE 228 (287)
Q Consensus 173 ~--~~~linvY~P~~~~~~~-~~~~~~r~~f~~~L~~~l~~~---~~~pvIl~GDFN~~~~~ 228 (287)
+ .+.|+|+|+++...... ......|..++..|.+++++. .+.|+|||||||+.+.+
T Consensus 160 ~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s 221 (317)
T 3i41_A 160 NGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGT 221 (317)
T ss_dssp TTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTS
T ss_pred CCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCeEEEEeECCCCCCC
Confidence 3 59999999987542100 123456777888888888763 47899999999998754
No 23
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.54 E-value=5.6e-14 Score=123.58 Aligned_cols=163 Identities=15% Similarity=0.186 Sum_probs=97.8
Q ss_pred CCCcEEEEEecCccchhhhcCc-hhHHHHHhhcC-CCEEEEeeecCCCC-----CC---CCCCccccccchhhhhhHHHH
Q 023088 39 KDPLKFVTWNANSLLLRVKNNW-PEFSNFITTFD-PDVIALQEVRMPAA-----GS---KDAPKNHQELKDDTKASREEK 108 (287)
Q Consensus 39 ~~~lkIiTwNv~gl~~~~~~~~-~~l~~~l~~~~-pDIv~LQEt~~~~~-----~~---~~~~~~~~~l~d~~~~~~~~~ 108 (287)
...+||+|||++|........| ..+.++|...+ +|||+|||+..-+. .. +. .....++.
T Consensus 13 ~~~~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~-g~~v~E~~---------- 81 (262)
T 2f1n_A 13 LTDFRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSP-GIPVRELI---------- 81 (262)
T ss_dssp GGGCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCS-SCCCEEEE----------
T ss_pred cceeEEEEEEcCCCCCCCcccccccHHHHHccCCCCCEEEEeecCCcCcccccccccccCC-CcCHHHHH----------
Confidence 4578999999999654221112 35888999988 99999999985421 11 00 00011110
Q ss_pred HHHHHhhCCCCCCCceEEEEcc---CCCceeEEEEEecCCCcceEeecCcccccccCCCCCEEEEEeCCEEEEEEeeCCC
Q 023088 109 LILMRALSSPPFKNYQIWWSLA---DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 185 (287)
Q Consensus 109 ~~~~~~L~~~~~~gy~~~~~~~---~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR~l~~~~~~~~linvY~P~~ 185 (287)
..|......++.++|... ..+..|+||+||.++ ...+-++. .. .....+|-++++.+.++++|+-..
T Consensus 82 ----w~lGt~srp~~~yiY~~~~D~~~~r~nlAIlSr~~a---dev~vLp~--~~-~~~Rp~lgiri~~~~ff~tHa~a~ 151 (262)
T 2f1n_A 82 ----WNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRA---DEVFVLSP--VR-QGGRPLLGIRIGNDAFFTAHAIAM 151 (262)
T ss_dssp ----EECCSSSSSCEEEEEEECSCSSSCSSCEEEEESSCC---SEEEEECC--SS-TTCCCEEEEEETTEEEEEEECCSS
T ss_pred ----HHhCCCCCCceEEEEEeeccCCCCceeeEEEEcccc---cceEECCC--CC-CCCCceEEEEECCEEEEEEEecCC
Confidence 111100012365433322 235779999999853 22333442 11 223447888999999999998776
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhCCC-----CCEEEEecCCCCCCCc
Q 023088 186 GWKEEENSFQRRRKWDKRIQEFVLQCSG-----KPLIWCGDLNVSHEEI 229 (287)
Q Consensus 186 ~~~~~~~~~~~r~~f~~~L~~~l~~~~~-----~pvIl~GDFN~~~~~~ 229 (287)
+.. + +.+....+.+++..... .|+||+||||..+.+.
T Consensus 152 ~g~-d------a~a~v~~I~~~~~~~~~~~~~~~pwii~GDFNr~P~sl 193 (262)
T 2f1n_A 152 RNN-D------APALVEEVYNFFRDSRDPVHQALNWMILGDFNREPADL 193 (262)
T ss_dssp SSC-S------HHHHHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHHH
T ss_pred CCc-c------HHHHHHHHHHHHhcCcccccCCCcEEEEecCCCCCcch
Confidence 432 1 23456677777765334 5999999999988654
No 24
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.53 E-value=1.2e-13 Score=122.36 Aligned_cols=168 Identities=14% Similarity=0.168 Sum_probs=92.4
Q ss_pred CCcEEEEEecCccchhhhcCc-hhHHHHHhh-cCCCEEEEeeecCCCCCCCCCCccccccchh--hhhhHHHHHHHHHhh
Q 023088 40 DPLKFVTWNANSLLLRVKNNW-PEFSNFITT-FDPDVIALQEVRMPAAGSKDAPKNHQELKDD--TKASREEKLILMRAL 115 (287)
Q Consensus 40 ~~lkIiTwNv~gl~~~~~~~~-~~l~~~l~~-~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~--~~~~~~~~~~~~~~L 115 (287)
..+||+|||++|.......+| ..+.++|+. .+||||+|||+...+...... +++.+. +. .+|. .-.|
T Consensus 3 ~~~kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~----~r~~~~~g~~--v~e~---~w~l 73 (261)
T 1sr4_B 3 SDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRT----SRVIQHGGTP--IEEY---TWNL 73 (261)
T ss_dssp GGSCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEEC----SCCCCCSSSC--CEEE---EEES
T ss_pred cccEEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCEEEEecCCCCCCccccc----hhhhcccCCc--hhhh---hhhc
Confidence 368999999998533221112 359999999 889999999998643210000 000000 00 0000 0001
Q ss_pred CCCCCCCceE-EEEcc--CCCceeEEEEEecCCCcceEeecCcccccccCCCCC-EEEEEeCCEEEEEEeeCCCCCCCch
Q 023088 116 SSPPFKNYQI-WWSLA--DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAEFETFYLLNTYAPNNGWKEEE 191 (287)
Q Consensus 116 ~~~~~~gy~~-~~~~~--~~~~~GVAIlsr~~i~p~~~~~~l~~~~~~~d~egR-~l~~~~~~~~linvY~P~~~~~~~~ 191 (287)
......++.+ |+... ..+..|+||+||.+ +...+.++. .....+.| ++.++++++.++++|+...+..+
T Consensus 74 g~~~r~~~~yiy~~~~d~~~g~~g~AIlSR~~---~~~v~~l~~--~~~~~~~R~~l~i~i~g~~f~s~Hl~~~~~~e-- 146 (261)
T 1sr4_B 74 GTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQ---ADEAFIVHS--DSSVLQSRPAVGIRIGTDVFFTVHALATGGSD-- 146 (261)
T ss_dssp SCSSSCCEEEEEEECCCTTTSCSCEEEEESSC---CSEEEEECC--CCCSSCCCCEEEEEETTEEEEEEECCTTTTTT--
T ss_pred ccccCCCceEEEEEeecCCCCccceEEEEccc---hhceEEcCC--CCCCCcCcceEEEEECCeEEEEeCCCCCCCch--
Confidence 0000013333 33321 12456999999984 322333321 11123455 77788889999999998765221
Q ss_pred hhHHHHHHHHHHHHHHHHhC---CC---CCEEEEecCCCCCCC
Q 023088 192 NSFQRRRKWDKRIQEFVLQC---SG---KPLIWCGDLNVSHEE 228 (287)
Q Consensus 192 ~~~~~r~~f~~~L~~~l~~~---~~---~pvIl~GDFN~~~~~ 228 (287)
+.+....+.+++... .. .++||+||||..+..
T Consensus 147 -----a~~~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN~~p~~ 184 (261)
T 1sr4_B 147 -----AVSLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPAN 184 (261)
T ss_dssp -----HHHHHHHHHHHHHC---CGGGGGCEEEEEEECSSCHHH
T ss_pred -----HHHHHHHHHHHHHhcccCCcccCCcEEEEeeCCCChhH
Confidence 223455566776543 34 699999999987533
No 25
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.45 E-value=7e-13 Score=124.81 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=33.0
Q ss_pred CCCcEEEEEecCccch--------------hhhcCchhHHHHHhhcCCCEEEEeeecCC
Q 023088 39 KDPLKFVTWNANSLLL--------------RVKNNWPEFSNFITTFDPDVIALQEVRMP 83 (287)
Q Consensus 39 ~~~lkIiTwNv~gl~~--------------~~~~~~~~l~~~l~~~~pDIv~LQEt~~~ 83 (287)
...++|+||||..-.- ....+...+.++|..++||||||||+...
T Consensus 29 ~~~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~~ 87 (398)
T 3ngq_A 29 SASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETE 87 (398)
T ss_dssp CEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHH
T ss_pred CCCEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCCCEEEEecccHH
Confidence 4579999999975210 01111267999999999999999999753
No 26
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.34 E-value=4.2e-11 Score=105.49 Aligned_cols=156 Identities=14% Similarity=0.105 Sum_probs=79.2
Q ss_pred cEEEEEecCccchhhhcCchhHHHHHhh--cCCCEEEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCC
Q 023088 42 LKFVTWNANSLLLRVKNNWPEFSNFITT--FDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPP 119 (287)
Q Consensus 42 lkIiTwNv~gl~~~~~~~~~~l~~~l~~--~~pDIv~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~L~~~~ 119 (287)
|||+||||+++.....+ ...+.+.|.+ .+||||||||+..... ..+. .+.+.|....
T Consensus 1 lrv~s~NI~~~g~~~~~-~~~~~~~i~~~~~~~DIv~LQEv~~~~~---------~~~~-----------~l~~~L~~~~ 59 (260)
T 2a40_B 1 LKIAAFNIRTFGETKMS-NATLASYIVRIVRRYDIVLIQEVRDSHL---------VAVG-----------KLLDYLNQDD 59 (260)
T ss_dssp CEEEEEEEEEESHHHHH-SHHHHHHHHHHHTTCSEEEEEEECCTTS---------HHHH-----------HHHHHHTSSS
T ss_pred CEEEEEehhhhCCCccc-hHHHHHHHHHHhccCCEEEEEEEEcCch---------hHHH-----------HHHHHHHhcc
Confidence 69999999875322111 1344455544 3899999999975421 0111 1123453111
Q ss_pred CCCceEEEEccCC---CceeEEEEEecCCCcceEe--ecCcccc-----cccCCCCCEEEEEe-----CCEEEEEEeeCC
Q 023088 120 FKNYQIWWSLADS---KYAGTALLVKKCFQPKKVS--FSLEKTA-----LKYEPDGRVILAEF-----ETFYLLNTYAPN 184 (287)
Q Consensus 120 ~~gy~~~~~~~~~---~~~GVAIlsr~~i~p~~~~--~~l~~~~-----~~~d~egR~l~~~~-----~~~~linvY~P~ 184 (287)
..+|.++...... +..++|+++|.+ .+.+. ..++... .......++..... ..++++++|+++
T Consensus 60 ~~~y~~v~~~~~~~~~~~~~~~~ly~~~--~v~~~~~~~~~~~~~~~~~~~~~R~p~~~~~~~~~~~g~~~~vi~~Hl~~ 137 (260)
T 2a40_B 60 PNTYHYVVSEPLGRNSYKERYLFLFRPN--KVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAP 137 (260)
T ss_dssp TTSCEEEECCCBCSSSCCBEEEEEECTT--TCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCG
T ss_pred CCCcEEEEcccCCCCCCcEEEEEEEcCc--eeEecCceeccCCCcCCCCCceeeCCEEEEEEeCCCCCceEEEEEecCCC
Confidence 1347766543221 234689999986 22221 1122100 00111222333332 259999999986
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHh-CCCCCEEEEecCCCCCC
Q 023088 185 NGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHE 227 (287)
Q Consensus 185 ~~~~~~~~~~~~r~~f~~~L~~~l~~-~~~~pvIl~GDFN~~~~ 227 (287)
.+. .+ ..+.+..+...+.+ ....|+|||||||..+.
T Consensus 138 ~~~------~~-q~~~l~~~~~~~~~~~~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 138 SDA------VA-EINSLYDVYLDVQQKWHLNDVMLMGDFNADCS 174 (260)
T ss_dssp GGH------HH-HHHHHHHHHHHHHHHHCCCCEEEEEECCCSTT
T ss_pred CCc------HH-HHHHHHHHHHHHHHhCCCCCEEEEecCCCCCc
Confidence 432 11 11222222222222 24689999999999766
No 27
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.98 E-value=1e-10 Score=118.02 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=22.4
Q ss_pred CCcEEEEEecCcc--ch------------hhhcCchhHHHHHhhcCCCEEEEeeecC
Q 023088 40 DPLKFVTWNANSL--LL------------RVKNNWPEFSNFITTFDPDVIALQEVRM 82 (287)
Q Consensus 40 ~~lkIiTwNv~gl--~~------------~~~~~~~~l~~~l~~~~pDIv~LQEt~~ 82 (287)
..++++|||+... .. .+..+...+.+.|..++||||||||+..
T Consensus 393 ~~~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~ 449 (727)
T 4b8c_D 393 RTFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVES 449 (727)
T ss_dssp ---------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCH
T ss_pred cceeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCH
Confidence 4689999999751 10 0111125789999999999999999974
No 28
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=98.84 E-value=4.8e-08 Score=90.16 Aligned_cols=163 Identities=15% Similarity=0.168 Sum_probs=85.0
Q ss_pred CCcEEEEEecCccchhhhcCchhHHHHHhh---cCCCE--EEEeeec-CCCCCCCCCCccccccchhhhhhHHHHHHHHH
Q 023088 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITT---FDPDV--IALQEVR-MPAAGSKDAPKNHQELKDDTKASREEKLILMR 113 (287)
Q Consensus 40 ~~lkIiTwNv~gl~~~~~~~~~~l~~~l~~---~~pDI--v~LQEt~-~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~ 113 (287)
-.+.|+||||+|... . ..+..||.. ..||| |||||.- +....+... .....+.| .+.+..
T Consensus 25 ~~i~v~TwNv~g~~~-~----~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~----~~~~~~~w-----~~~i~~ 90 (347)
T 1i9z_A 25 VKIFVASYNLNGCSA-T----TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISA----DPAKRREW-----ESCVKR 90 (347)
T ss_dssp EEEEEEEEECTTCCC-C----SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CC----CHHHHHHH-----HHHHHH
T ss_pred cEEEEEeEecCCCCC-c----hhHHHHhccccCCCCCEEEEEeEEeecCchhhhccc----CchhHHHH-----HHHHHH
Confidence 368999999999764 1 358889884 68999 8999984 333221100 00000000 011122
Q ss_pred hhCCC--CCCCceEEEEccCCCceeEEEEEecCCCcc--eEe-----ecCcccccccCCCCCEEEEE--eC--CEEEEEE
Q 023088 114 ALSSP--PFKNYQIWWSLADSKYAGTALLVKKCFQPK--KVS-----FSLEKTALKYEPDGRVILAE--FE--TFYLLNT 180 (287)
Q Consensus 114 ~L~~~--~~~gy~~~~~~~~~~~~GVAIlsr~~i~p~--~~~-----~~l~~~~~~~d~egR~l~~~--~~--~~~linv 180 (287)
.|... ...+|..+.+. .-..-+++|++|.++.+. .+. .++.+ .....| .+.+. +. .+.++|+
T Consensus 91 ~L~~~~~~~~~Y~~v~s~-~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g---~~gnKG-av~vr~~~~~~~l~fvn~ 165 (347)
T 1i9z_A 91 LLNGKCTSGPGYVQLRSG-QLVGTALMIFCKESCLPSIKNVEGTVKKTGLGG---VSGNKG-AVAIRFDYEDTGLCFITS 165 (347)
T ss_dssp HHHHTCCSSCCEEEEEEE-EETTEEEEEEEEGGGGGGEEEEEEEEEECCCC-------CCE-EEEEEEEETTEEEEEEEE
T ss_pred HHhhcccCCCceeEEEEe-eccceEEEEEEehHhhhhccceeeeeEeccCCC---ccCCCc-eEEEEEEECCeEEEEEEe
Confidence 33100 01345544331 223457888999975432 111 23321 111222 34444 43 6999999
Q ss_pred eeCCCCCCCchhhHHHHHHHHHHHHHHHHh------CCCCCEEEEecCCCCC
Q 023088 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQ------CSGKPLIWCGDLNVSH 226 (287)
Q Consensus 181 Y~P~~~~~~~~~~~~~r~~f~~~L~~~l~~------~~~~pvIl~GDFN~~~ 226 (287)
|+.++... ...|.+.+..+.+.+.- ....++|++||||...
T Consensus 166 HLaa~~~~-----~~~R~~d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNyRi 212 (347)
T 1i9z_A 166 HLAAGYTN-----YDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRI 212 (347)
T ss_dssp ECCCCSSC-----HHHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCB
T ss_pred cCCCCCcc-----HHHHHHHHHHHHHhhccCcccccccCccEEEeccccccc
Confidence 99987642 33455555555443320 1347899999999654
No 29
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=98.78 E-value=2.9e-09 Score=95.57 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=77.1
Q ss_pred CCcEEEEEecCccchhhhcCchhHHHHHh---hcCCCE--EEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHHh
Q 023088 40 DPLKFVTWNANSLLLRVKNNWPEFSNFIT---TFDPDV--IALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRA 114 (287)
Q Consensus 40 ~~lkIiTwNv~gl~~~~~~~~~~l~~~l~---~~~pDI--v~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~ 114 (287)
-.++|+||||++.... ..+..|+. ..+||| |||||......... ....+.+. +.+.
T Consensus 7 ~~i~V~T~Nv~~~~~~-----~~l~~wl~~~~~~~pDI~viglQEv~~~~~~~~----~~~~w~~~----------l~~~ 67 (282)
T 2imq_X 7 LSVHTVSWNSGHERAP-----TNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQ----QGPACVKN----------FQSL 67 (282)
T ss_dssp EEEEEEEEEEETCCCC-----SCCHHHHTCTTSCCCSEEEEEEEESCTTTCTTC----CHHHHHHH----------HHHH
T ss_pred cEEEEEEEeCCCCcCc-----hhHHHHhcccccCCCCEEEEEeeeeccccccch----hhHHHHHH----------HHHh
Confidence 4689999999876432 23556665 689996 59999975432100 00011111 1133
Q ss_pred hCCCCCCCceEEEEccCCCceeEE--EEEecCCCcc-e-Ee-ecCcccccccCCCCCEEEEEe--C--CEEEEEEeeCCC
Q 023088 115 LSSPPFKNYQIWWSLADSKYAGTA--LLVKKCFQPK-K-VS-FSLEKTALKYEPDGRVILAEF--E--TFYLLNTYAPNN 185 (287)
Q Consensus 115 L~~~~~~gy~~~~~~~~~~~~GVA--Ilsr~~i~p~-~-~~-~~l~~~~~~~d~egR~l~~~~--~--~~~linvY~P~~ 185 (287)
|. ..+|..+.+. ..+..|++ |++|.++.+. . .. .++.+ .....| .+.+.+ . .+.++|+|+.++
T Consensus 68 L~---~~~Y~~v~~~-~~~~~G~~l~vf~k~~~~~~i~~~~~~~~~g---~~g~kG-av~~r~~~~~~~~~fvn~HL~~~ 139 (282)
T 2imq_X 68 LT---SKGYTKLKNT-ITETMGLTVYCLEKHLDQNTLKNETIIVTVD---DQKKSG-GIVTSFTIYNKRFSFTTSRMSDE 139 (282)
T ss_dssp HH---HTTEEEEEEE-ECSSEEEEEEEEGGGCCTTTCCCEEEEEECS---TTSCSE-EEEEEEEETTEEEEEEEEECCTT
T ss_pred cC---CCceEEEEec-cCceeEEEEEEEEccccCccceeeeeccccc---cccCCc-eEEEEEEECCEEEEEEEECCCCC
Confidence 31 1356554331 12334544 4456653221 1 11 11211 111122 344443 3 599999999987
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHh-CCCCCEEEEecCCCCCC
Q 023088 186 GWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHE 227 (287)
Q Consensus 186 ~~~~~~~~~~~r~~f~~~L~~~l~~-~~~~pvIl~GDFN~~~~ 227 (287)
..... . |.+.+..+.+.+.. ....++|++||||...+
T Consensus 140 ~~~~~-~----R~~~~~~I~~~~~~~~~~~~vi~~GDfN~r~~ 177 (282)
T 2imq_X 140 DVTST-N----TKYAYDTRLDYSKKDDPSDFLFWIGDLNVRVE 177 (282)
T ss_dssp CCCTT-S----SSSSCCGGGCTTSSSSCCSEEEEEEECSCCBC
T ss_pred CchHH-H----HHHHHHHHHHhhhccCccceEEEecccccccC
Confidence 43211 1 11122333332322 24568999999997654
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=98.76 E-value=2.6e-08 Score=92.31 Aligned_cols=152 Identities=19% Similarity=0.229 Sum_probs=84.6
Q ss_pred CCcEEEEEecCccchhhhcCchhHHHHHh----hcCCCE--EEEeeecCCCCCCCCCCccccccchhhhhhHHHHHHHHH
Q 023088 40 DPLKFVTWNANSLLLRVKNNWPEFSNFIT----TFDPDV--IALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMR 113 (287)
Q Consensus 40 ~~lkIiTwNv~gl~~~~~~~~~~l~~~l~----~~~pDI--v~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~ 113 (287)
-.+.|+||||+|..... ..+..|+. ...||| |+|||+..... .+. ..+.+
T Consensus 26 l~i~v~TwNv~g~~~~~----~~L~~~l~~~~~~~~pDI~viGlQEi~~~~~----------~W~----------~~l~~ 81 (357)
T 2xsw_A 26 VALFVATWNMQGQKELP----PSLDEFLLPAEADYAQDLYVIGVQEGCSDRR----------EWE----------TRLQE 81 (357)
T ss_dssp EEEEEEEEECTTCSSCC----SCCHHHHSCTTCCSCCSEEEEEEESCCSCHH----------HHH----------HHHHH
T ss_pred ceEEEEEEecCCCCCCc----ccHHHHhccccccCCCCEEEEEeeeccchHH----------HHH----------HHHHH
Confidence 35889999999864332 34666664 357996 88999964311 111 11224
Q ss_pred hhCCCCCCCceEEEEccCCCceeEEEEEecCCCcc----e---EeecCcccccccCCCCC-EEEEEeC--CEEEEEEeeC
Q 023088 114 ALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK----K---VSFSLEKTALKYEPDGR-VILAEFE--TFYLLNTYAP 183 (287)
Q Consensus 114 ~L~~~~~~gy~~~~~~~~~~~~GVAIlsr~~i~p~----~---~~~~l~~~~~~~d~egR-~l~~~~~--~~~linvY~P 183 (287)
.|. .+|..+.+ ..-+..+++||+|.++.+. . +..++.+ .....|- .+.+.+. .+.++|+|+.
T Consensus 82 ~L~----~~Y~~v~s-~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g---~~gNKGav~vr~~~~~t~~~Fvn~HLa 153 (357)
T 2xsw_A 82 TLG----PHYVLLSS-AAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVS---QIKTKGALGISFTFFGTSFLFITSHFT 153 (357)
T ss_dssp HHC----TTEEEEEE-EEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEE---TTEEEEEEEEEEEETTEEEEEEEEECC
T ss_pred HhC----Ccccchhh-hhhhhEEEEEEEchHHhhcCceeEeccccccccc---ccccccEEEEEEEECCeEEEEEEEccC
Confidence 452 45654433 2224467899999874321 1 1112211 1111222 2233343 6999999999
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHh------------------CCCCCEEEEecCCCCCCC
Q 023088 184 NNGWKEEENSFQRRRKWDKRIQEFVLQ------------------CSGKPLIWCGDLNVSHEE 228 (287)
Q Consensus 184 ~~~~~~~~~~~~~r~~f~~~L~~~l~~------------------~~~~pvIl~GDFN~~~~~ 228 (287)
++... ...|.+.+..+.+.+.- .....+|++||||...+.
T Consensus 154 a~~~~-----~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~ 211 (357)
T 2xsw_A 154 SGDGK-----VAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSG 211 (357)
T ss_dssp CSTTC-----HHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSS
T ss_pred CCCch-----HHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCccccc
Confidence 87642 34455555555444320 023689999999986653
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=98.64 E-value=6.2e-07 Score=81.36 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=86.6
Q ss_pred CcEEEEEecCccchhhhcCchhHHHHHhh--cCCC--EEEEeeecCCCCCCC-CCCccccccchhhhhhHHHHHHHHHhh
Q 023088 41 PLKFVTWNANSLLLRVKNNWPEFSNFITT--FDPD--VIALQEVRMPAAGSK-DAPKNHQELKDDTKASREEKLILMRAL 115 (287)
Q Consensus 41 ~lkIiTwNv~gl~~~~~~~~~~l~~~l~~--~~pD--Iv~LQEt~~~~~~~~-~~~~~~~~l~d~~~~~~~~~~~~~~~L 115 (287)
.+.|+||||||.... ..+..||.. ..|| ||+|||+......+. .++ .. .+.| .+.+...|
T Consensus 9 ~i~v~TwNvng~~~~-----~~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~~~~----~~-~~~W-----~~~i~~~L 73 (313)
T 3mtc_A 9 RFFAGTYNVNGQSPK-----ECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDT----PK-EEEW-----FKAVSEGL 73 (313)
T ss_dssp EEEEEEEECTTCCCC-----SCTHHHHSSSCCCCSEEEEEEECSCCSHHHHTTCCC----HH-HHHH-----HHHHHHHS
T ss_pred EEEEEEEEcCCccCc-----hhHHHHhcccCCCCCeEEEEEEecccchhhhcccCc----ch-HHHH-----HHHHHHhc
Confidence 467899999998542 468889886 7899 789999976432110 000 00 0101 12223455
Q ss_pred CCCCCCCceEEEEccCCCceeEEEEEecCCCcc-e------EeecCcccccccCCCCC-EEEEEeC--CEEEEEEeeCCC
Q 023088 116 SSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK-K------VSFSLEKTALKYEPDGR-VILAEFE--TFYLLNTYAPNN 185 (287)
Q Consensus 116 ~~~~~~gy~~~~~~~~~~~~GVAIlsr~~i~p~-~------~~~~l~~~~~~~d~egR-~l~~~~~--~~~linvY~P~~ 185 (287)
. +..+|....+... ..--+.+++|..+.+. . +..|+.+ .....|- .+.+.+. .+.++|.|++++
T Consensus 74 ~--~~~~Y~~v~s~~l-vGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g---~~GNKGaV~ir~~~~~ts~cFVnsHLaA~ 147 (313)
T 3mtc_A 74 H--PDAKYAKVKLIRL-VGIMLLLYVKQEHAAYISEVEAETVGTGIMG---RMGNKGGVAIRFQFHNTSICVVNSHLAAH 147 (313)
T ss_dssp C--TTSCEEEEEEEEE-TTEEEEEEEEGGGGGGEEEEEEEEEECSGGG---TSTTSEEEEEEEEETTEEEEEEEEECCCS
T ss_pred C--CCCCEEEEEEech-hhhhhhhhhhhhhhhhcceeEeeeecccccc---cccCCceEEEEEEECCcEEEEEeeccCCC
Confidence 3 2235765543211 1123556778764321 1 2223321 1223343 2334443 699999999887
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHh------------CCCCCEEEEecCCCCCCCc
Q 023088 186 GWKEEENSFQRRRKWDKRIQEFVLQ------------CSGKPLIWCGDLNVSHEEI 229 (287)
Q Consensus 186 ~~~~~~~~~~~r~~f~~~L~~~l~~------------~~~~pvIl~GDFN~~~~~~ 229 (287)
.. ..+.|.+-+..+.+.+.- .....++++||||...+.+
T Consensus 148 ~~-----~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~~~ 198 (313)
T 3mtc_A 148 IE-----EYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEEL 198 (313)
T ss_dssp GG-----GHHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBCSS
T ss_pred ch-----HHHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEeccccccccCC
Confidence 53 344555444444433310 0124599999999876543
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.11 E-value=9.3e-06 Score=73.74 Aligned_cols=153 Identities=20% Similarity=0.203 Sum_probs=79.6
Q ss_pred CcEEEEEecCccchhhhcCchhHHHHHhh-------------cCCCEE--EEeeecCCCCCCCCCCccccccchhhhhhH
Q 023088 41 PLKFVTWNANSLLLRVKNNWPEFSNFITT-------------FDPDVI--ALQEVRMPAAGSKDAPKNHQELKDDTKASR 105 (287)
Q Consensus 41 ~lkIiTwNv~gl~~~~~~~~~~l~~~l~~-------------~~pDIv--~LQEt~~~~~~~~~~~~~~~~l~d~~~~~~ 105 (287)
.+-|.||||+|...+ ..|..||.- ..|||+ ++||..... ..+.+.
T Consensus 9 ~i~vgTwNv~g~~p~-----~~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~~----------~~W~~~----- 68 (316)
T 4a9c_A 9 SVFIGTWNMGSVPPP-----KNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGD----------REWLDL----- 68 (316)
T ss_dssp EEEEEEEECTTSCCC-----SCCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSCH----------HHHHHH-----
T ss_pred EEEEEEeEcCCcCCC-----cchhHhhcccccccCcccccccCCCcEEEEeccccccch----------hHHHHH-----
Confidence 577889999985432 357788752 347987 889974321 111111
Q ss_pred HHHHHHHHhhCCCCCCCceEEEEccCCCceeEEEEEecCCCcc-e------EeecCcccccccCCCCC-EEEEEeC--CE
Q 023088 106 EEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK-K------VSFSLEKTALKYEPDGR-VILAEFE--TF 175 (287)
Q Consensus 106 ~~~~~~~~~L~~~~~~gy~~~~~~~~~~~~GVAIlsr~~i~p~-~------~~~~l~~~~~~~d~egR-~l~~~~~--~~ 175 (287)
+.+.|.......|....+. .-..-+++|++|.++.+. . +..++.+ .....|- .+.+.+. .+
T Consensus 69 -----i~~~L~~~~~~~Y~~v~s~-~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g---~~GNKGaV~ir~~~~~ts~ 139 (316)
T 4a9c_A 69 -----LRGGLKELTDLDYRPIAMQ-SLWNIKVAVLVKPEHENRISHVSTSSVKTGIAN---TLGNKGAVGVSFMFNGTSF 139 (316)
T ss_dssp -----HHHHHHHHHSCCCEEEEEE-EETTEEEEEEECGGGGGGEEEEEEEEEEEC---------CEEEEEEEEEETTEEE
T ss_pred -----HHHHhccccCCCEEEEEee-eehheeeeeEEeHHHhhhCcccccceeeeeeeE---ecCCCceEEEEEEECCcEE
Confidence 1122210001357655432 123357888899865331 1 1223321 1122333 2334443 69
Q ss_pred EEEEEeeCCCCCCCchhhHHHHHHHHHHHHHHHHh----C-------CCCCEEEEecCCCCCC
Q 023088 176 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ----C-------SGKPLIWCGDLNVSHE 227 (287)
Q Consensus 176 ~linvY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~----~-------~~~pvIl~GDFN~~~~ 227 (287)
.++|.|+.++.. ...+|.+-+..+.+.+.- . ....+|++||||...+
T Consensus 140 ~FVn~HLaAg~~-----~~~~Rn~d~~~I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLNyRi~ 197 (316)
T 4a9c_A 140 GFVNCHLTSGNE-----KTARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLD 197 (316)
T ss_dssp EEEEEECCCSTT-----CHHHHHHHHHHHHHHCCC-------CCTTTTSSEEEEEEECCCCBS
T ss_pred EEEEeccccCch-----HHHHHHHHHHHHHHhCCCCCCCcCccccCCcCCeEEEcCCccCCcC
Confidence 999999998764 234455444444433210 0 1135899999998653
No 33
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=40.40 E-value=19 Score=31.03 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=28.4
Q ss_pred cCCCCCCcEEEEEecCccchhhhcCchhHHHHHhh---cCCCEEEEeeecCCC
Q 023088 35 ENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITT---FDPDVIALQEVRMPA 84 (287)
Q Consensus 35 ~~~~~~~lkIiTwNv~gl~~~~~~~~~~l~~~l~~---~~pDIv~LQEt~~~~ 84 (287)
+......|||...-.+-.......+.+.+.+++++ .++|+|+++|+....
T Consensus 14 ~~~~~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~g 66 (281)
T 3p8k_A 14 LVPRGSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNG 66 (281)
T ss_dssp CCCTTSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTT
T ss_pred ccccCCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCC
Confidence 33455667777655543211111011345555554 589999999998764
No 34
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=30.03 E-value=29 Score=29.88 Aligned_cols=49 Identities=6% Similarity=-0.000 Sum_probs=26.9
Q ss_pred CCCCCCcEEEEEecCccchhhhcCchhHHHHHh---hcCCCEEEEeeecCCC
Q 023088 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT---TFDPDVIALQEVRMPA 84 (287)
Q Consensus 36 ~~~~~~lkIiTwNv~gl~~~~~~~~~~l~~~l~---~~~pDIv~LQEt~~~~ 84 (287)
......|||...-.+-.......+.+.+.++++ +.++|+|+++|+....
T Consensus 15 ~~~~~~~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~g 66 (283)
T 3hkx_A 15 VIRGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFG 66 (283)
T ss_dssp CCTTEEEEEEEEEBCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTGGGC
T ss_pred eecCCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccC
Confidence 334556777765444321111101133444444 4589999999998763
No 35
>2la2_A Cecropin, papiliocin; antimicrobial peptide, cecropin-like peptide, AN inflammatory activity, antimicrobial protein; NMR {Papilio xuthus}
Probab=20.39 E-value=7.9 Score=23.12 Aligned_cols=6 Identities=67% Similarity=1.010 Sum_probs=2.9
Q ss_pred cccccc
Q 023088 4 FFKPIE 9 (287)
Q Consensus 4 ~~~~~~ 9 (287)
|||+||
T Consensus 4 ~FK~iE 9 (38)
T 2la2_A 4 IFKKIE 9 (38)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
Done!