BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023089
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 109 MIEIQSAQELVDALRNGGD--RLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNY 166
+I + QE + NG D +LVI+DF + CG C+ + P + A+ P AIFLKV+
Sbjct: 8 VIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDV 67
Query: 167 EELKTMCHSLHIHVLPFFKFYRGSE 191
+ELK + + ++ +P F F + E
Sbjct: 68 DELKDVAEAYNVEAMPTFLFIKDGE 92
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK 170
+++SA E AL +G D+LV++DF++ CG CK + P I + AE +A F K++ +E+
Sbjct: 11 QLKSASEYDSALASG-DKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVS 69
Query: 171 TMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKK 206
+ + +P FY+G + A IK+
Sbjct: 70 DVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQ 105
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE 168
+ +++SA E AL +G D+LV++DF++ CG CK + P I + AE +A F K++ +E
Sbjct: 2 VTQLKSASEYDSALASG-DKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDE 60
Query: 169 LKTMCHSLHIHVLPFFKFYRG 189
+ + + +P FY+G
Sbjct: 61 VSDVAQKAEVSSMPTLIFYKG 81
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 124 NGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPF 183
N +LV++DF + CG C+ + P LA+ PNA+FLKV+ +ELK + + +P
Sbjct: 31 NTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPT 90
Query: 184 FKFYR 188
F F +
Sbjct: 91 FLFMK 95
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%)
Query: 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK 170
+++ ++ L G++LV++DFY+ CG CK + PK+ +L++ + +FLKV+ +E +
Sbjct: 4 QVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECE 63
Query: 171 TMCHSLHIHVLPFFKFYRGSE 191
+ I +P F F + +
Sbjct: 64 DIAQDNQIACMPTFLFMKNGQ 84
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK 170
+I+S +AL GD+LV++DF + CG CK + P L+E N IFL+V+ ++ +
Sbjct: 4 QIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQ 63
Query: 171 TMCHSLHIHVLPFFKFYRGSEGHLCSFSCTN 201
+ + P F+F++ + + FS N
Sbjct: 64 DVASEAEVKATPTFQFFKKGQ-KVGEFSGAN 93
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK 170
+I+S +AL GD+LV++DF + CG CK + P L+E N IFL+V+ ++ +
Sbjct: 4 QIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQ 63
Query: 171 TMCHSLHIHVLPFFKFYR 188
+ + +P F+F++
Sbjct: 64 DVASEXEVKCMPTFQFFK 81
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK 170
+I+S +AL GD+LV++DF + CG CK + P L+E N IFL+V+ ++ +
Sbjct: 4 QIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQ 63
Query: 171 TMCHSLHIHVLPFFKFYR 188
+ + +P F+F++
Sbjct: 64 DVASECEVKCMPTFQFFK 81
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK 170
+I+S +AL GD+LV++DF + CG CK + P L+E N IFL+V+ ++ +
Sbjct: 4 QIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQ 63
Query: 171 TMCHSLHIHVLPFFKFYR 188
+ + +P F+F++
Sbjct: 64 DVASECEVKSMPTFQFFK 81
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK 170
+I+S +AL GD+LV++DF + CG CK + P L+E N IFL+V+ ++ +
Sbjct: 4 QIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQ 63
Query: 171 TMCHSLHIHVLPFFKFYR 188
+ + +P F+F++
Sbjct: 64 DVASESEVKSMPTFQFFK 81
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK 170
+I+S +AL GD+LV++DF + CG CK + P L+E N IFL+V+ + +
Sbjct: 4 QIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVNDCQ 63
Query: 171 TMCHSLHIHVLPFFKFYR 188
+ + +P F+F++
Sbjct: 64 DVASECEVKCMPTFQFFK 81
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE 168
+ +++SA E AL +G D+LV++DF++ CG K + P I + AE +A F K++ +E
Sbjct: 2 VTQLKSASEYDSALASG-DKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDE 60
Query: 169 LKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKK 206
+ + + +P FY+G + A IK+
Sbjct: 61 VSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQ 98
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK 170
+++SA E AL +G D+LV++DF++ CG K + P I + AE +A F K++ +E+
Sbjct: 12 QLKSASEYDSALASG-DKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVS 70
Query: 171 TMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKK 206
+ + +P FY+G + A IK+
Sbjct: 71 DVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQ 106
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK 170
+I+S +AL GD+LV++DF + CG CK + P L+E N IFL+V+ ++ +
Sbjct: 4 QIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQ 63
Query: 171 TMCHSLHIHVLPFFKFYR 188
+ + P F+F++
Sbjct: 64 DVASECEVKCTPTFQFFK 81
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 124 NGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPF 183
N LV++DF + CG C+ + P LA+ PN +FLKV+ +ELK++ I +P
Sbjct: 35 NESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPT 94
Query: 184 FKFYRGSEGHLCSFSCTNATIKKFKDALAKH 214
F F + EG + A + + +AKH
Sbjct: 95 FMFLK--EGKILD-KVVGAKKDELQSTIAKH 122
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK 170
+I+S +AL GD+LV++DF + CG K + P L+E N IFL+V+ ++ +
Sbjct: 4 QIESKTAFQEALDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDDAQ 63
Query: 171 TMCHSLHIHVLPFFKFYRGSEGHLCSFSCTN 201
+ + P F+F++ + + FS N
Sbjct: 64 DVASEAEVKATPTFQFFKKGQ-KVGEFSGAN 93
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 124 NGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPF 183
N +LV++DF + CG + + P LA+ PNA+FLKV+ +ELK + + +P
Sbjct: 34 NTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPT 93
Query: 184 FKFYR 188
F F +
Sbjct: 94 FLFMK 98
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Query: 124 NGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPF 183
G +L+++DF + C CK + P +LA+ PN FLKV+ +ELK + ++ +P
Sbjct: 23 KGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPT 82
Query: 184 FKFYRGSEGHLCSFSCTNATIKKFKDAL----AKHGT 216
F F + +G L + T+ KD L AKH T
Sbjct: 83 FIFLK--DGKL-----VDKTVGADKDGLPTLVAKHAT 112
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 122 LRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVN-YEELKTMCHSLHIHV 180
++ GD+ V+LD ++ CG CK++ PK +LAE + IFLK++ +E KT+ L I V
Sbjct: 20 VKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRV 79
Query: 181 LPFFKFYR 188
+P FK +
Sbjct: 80 VPTFKILK 87
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 122 LRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVN-YEELKTMCHSLHIHV 180
++ GD+ V+LD ++ CG CK++ PK +LAE + IFLK++ +E KT+ L I V
Sbjct: 32 VKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRV 91
Query: 181 LPFFKFYR 188
+P FK +
Sbjct: 92 VPTFKILK 99
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK 170
+I+S +AL GD+LV++DF + CG K + P L+E N IFL+V+ ++ +
Sbjct: 4 QIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDSQ 63
Query: 171 TMCHSLHIHVLPFFKFYRGSEGHLCSFSCTN 201
+ + +P F+F++ + + FS N
Sbjct: 64 DVASESEVKSMPTFQFFKKGQ-KVGEFSGAN 93
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK 170
+I+S +AL GD+LV++DF + CG K + P L+E N IFL+V+ ++ +
Sbjct: 15 QIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQ 74
Query: 171 TMCHSLHIHVLPFFKFYR 188
+ + +P F+F++
Sbjct: 75 DVASECEVKSMPTFQFFK 92
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK 170
+I+S +AL GD+LV++DF + CG K + P L+E N IFL+V+ ++ +
Sbjct: 4 QIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQ 63
Query: 171 TMCHSLHIHVLPFFKFYR 188
+ + +P F+F++
Sbjct: 64 DVASECEVKRMPTFQFFK 81
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 128 RLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFY 187
++VI+DF + CG C+ + P + A+ P A+FLKV+ +ELK + ++ +P F F
Sbjct: 37 KVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFI 96
Query: 188 R-GSEG 192
+ G+E
Sbjct: 97 KDGAEA 102
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK 170
+I+S +AL GD+LV++DF + CG CK + P L+E N IFL+V+ ++ +
Sbjct: 4 QIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQ 63
Query: 171 TMCHSLHIHVLPFFKFYRGSEGHLCSF-SCTNATIKKFKDA 210
+ I +P ++ E + + +K+F DA
Sbjct: 64 DVAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDA 104
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 122 LRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVN-YEELKTMCHSLHIHV 180
++ GD+ V+LD ++ CG K++ PK +LAE + IFLK++ +E KT+ L I V
Sbjct: 19 VKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRV 78
Query: 181 LPFFKFYR 188
+P FK +
Sbjct: 79 VPTFKILK 86
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 108 NMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYE 167
+IE++ +L L ++LV++DF++ CG CK++ P +L+E +AIF+KV+ +
Sbjct: 14 ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE-KYDAIFVKVDVD 72
Query: 168 ELKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAK 213
+L+ +I +P F + E A+I K +D + K
Sbjct: 73 KLEETARKYNISAMPTFIAIKNGEK---VGDVVGASIAKVEDMIKK 115
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE 168
+IE++ +L L ++LV++DF++ CG CK++ P +L+E +AIF+KV+ ++
Sbjct: 6 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE-KYDAIFVKVDVDK 64
Query: 169 LKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAK 213
L+ +I +P F + E A+I K +D + K
Sbjct: 65 LEETARKYNISAMPTFIAIKNGEK---VGDVVGASIAKVEDMIKK 106
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK 170
+I+S +AL GD+LV++DF + CG CK + P L+E N IFL+V+ ++ +
Sbjct: 4 QIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDXQ 63
Query: 171 TMCHSLHIHVLPFFKFYR 188
+ + +P F+F++
Sbjct: 64 DVASEXEVKCMPTFQFFK 81
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 112 IQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKT 171
+ +A +L + RL+++DF++ CG C+++ PK+ LA+ P F KV+ ++ +
Sbjct: 4 LATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEE 63
Query: 172 MCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKH 214
+ +P F F + + + FS N T K ++ + +H
Sbjct: 64 AAAKYSVTAMPTFVFIKDGK-EVDRFSGANET--KLRETITRH 103
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEEL 169
+++ +L L +LV+LDF++ CG CK + PK+ +L+ + N + LKV+ +E
Sbjct: 9 QVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDEC 68
Query: 170 KTMCHSLHIHVLPFFKFYR 188
+ + +I +P F F +
Sbjct: 69 EDIAMEYNISSMPTFVFLK 87
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE 168
+ + ++A E A+ D+LV++DFY+ CG CK + P I + +E P A F K++ +E
Sbjct: 2 VTQFKTASEFDSAIAQ--DKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDE 59
Query: 169 LKTMCHSLHIHVLP-FFKFYRGSE 191
L + + +P F G E
Sbjct: 60 LGDVAQKNEVSAMPTLLLFKNGKE 83
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE 168
+ + ++A E A+ D+LV++DFY+ CG CK + P I + +E P A F K++ +E
Sbjct: 8 VTQFKTASEFDSAIAQ--DKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDE 65
Query: 169 LKTMCHSLHIHVLP-FFKFYRGSE 191
L + + +P F G E
Sbjct: 66 LGDVAQKNEVSAMPTLLLFKNGKE 89
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEEL 169
+++ +L L +LV+LDF++ CG CK + PK+ +L+ + N + LKV+ +E
Sbjct: 4 QVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDEC 63
Query: 170 KTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDAL 211
+ + +I +P F F + + F+ NA K+ +D +
Sbjct: 64 EDIAMEYNISSMPTFVFLKNG-VKVEEFAGANA--KRLEDVI 102
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK 170
+I+S +AL GD+LV++DF + G K + P L+E N IFL+V+ ++ +
Sbjct: 4 QIESKTAFQEALDAAGDKLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQ 63
Query: 171 TMCHSLHIHVLPFFKFYR 188
+ + +P F+F++
Sbjct: 64 DVASECEVKCMPTFQFFK 81
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE 168
M++I ++Q D++ + + LVI+DF++ CG CK + P + ++ +F+KV+ +E
Sbjct: 9 MVKIVTSQAEFDSIISQNE-LVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDE 67
Query: 169 LKTMCHSLHIHVLPFFKFYRG 189
+ + +I +P FK Y+
Sbjct: 68 VSEVTEKENITSMPTFKVYKN 88
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 116 QELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHS 175
Q+L +A R+G ++V+ +F + CG CK + P +L+E P+ +FL ++ +EL S
Sbjct: 37 QKLSEASRDG--KIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSAS 94
Query: 176 LHIHVLPFFKFYRGSE 191
I P F F R +
Sbjct: 95 WEIKATPTFFFLRDGQ 110
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 124 NGGDRLVILDFYSPGCGGCKSLHPKICQLAEL--NPNAIFLKVNYEELKTMCHSLHIHVL 181
GGD++V++DF++ CG CK + P ++++ F KV+ +E + + I +
Sbjct: 30 TGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAM 89
Query: 182 PFFKFYRGSE 191
P F F++ +
Sbjct: 90 PTFVFFKNGQ 99
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE 168
+ + ++A E A+ D+LV++DFY+ CG K + P I + +E P A F K++ +E
Sbjct: 8 VTQFKTASEFDSAIAQ--DKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDE 65
Query: 169 LKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKK 206
L + + +P ++ + A IK+
Sbjct: 66 LGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQ 103
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 122 LRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVL 181
L G RL ++ F GCG C + P ++ P A+FL+V+ + + + +I
Sbjct: 16 LSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISAT 75
Query: 182 PFFKFYR 188
P F+F+R
Sbjct: 76 PTFQFFR 82
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKF 186
D+LVI DFY+ CG CK + P + +L + P+ F+K + +E + + +P F
Sbjct: 31 DKLVI-DFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMP--TF 87
Query: 187 YRGSEGHL 194
G +G L
Sbjct: 88 VLGKDGQL 95
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 116 QELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHS 175
Q+L +A R+G ++V+ +F + CG + + P +L+E P+ +FL ++ +EL S
Sbjct: 37 QKLSEASRDG--KIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSAS 94
Query: 176 LHIHVLPFFKFYRGSE 191
I P F F R +
Sbjct: 95 WEIKATPTFFFLRDGQ 110
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKF 186
+++V++DF++ C C L P I +LA P F K+N EE + + I LP F
Sbjct: 23 NKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQDIAMRYGIMSLPTIMF 82
Query: 187 YRGSE 191
++ E
Sbjct: 83 FKNGE 87
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 112 IQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAI-FLKVNYEELK 170
I + E +D L D ++DF++P CG C+S P + A + F+KVN E
Sbjct: 41 INATAETLDKLLQD-DLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEP 99
Query: 171 TMCHSLHIHVLPFFKFYR 188
+ I +P YR
Sbjct: 100 ALSTRFRIRSIPTIXLYR 117
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 117 ELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAE---LNPNAIFLKVN 165
E D + N ++ V+++FY+P CG CK+L PK +L E +PN + K++
Sbjct: 360 ENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMD 411
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 117 ELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAE---LNPNAIFLKVN 165
E D + N ++ V+++FY+P CG CK+L PK +L E +PN + K++
Sbjct: 35 ENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMD 86
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 130 VILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYR 188
V++DF++P CG CK + P I +LA E + K+N +E + +I +P F++
Sbjct: 20 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 79
Query: 189 GSE 191
E
Sbjct: 80 NGE 82
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 130 VILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYR 188
V++DF++P CG CK + P I +LA E + K+N +E + +I +P F++
Sbjct: 21 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 80
Query: 189 GSE 191
E
Sbjct: 81 NGE 83
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFL-KVNYEELKTMCHSLHIHVLPFF 184
GD+ V++DF++ CG C+ + P + + AE + + + + K+N +E I +P
Sbjct: 16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 185 KFYRGSE 191
++G E
Sbjct: 76 ILFKGGE 82
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 126 GDRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLP 182
GD+ I+DFY+ CG CK + P + +LA E + + KV+ E+ + + + I +P
Sbjct: 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIP 94
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%)
Query: 114 SAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMC 173
SA + + LR L+++ F++P C ++ + +LA+ P F+K+ E + +
Sbjct: 19 SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVS 78
Query: 174 HSLHIHVLPFFKFYRGSE 191
I +P F F++ S+
Sbjct: 79 EKYEISSVPTFLFFKNSQ 96
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%)
Query: 114 SAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMC 173
SA + + LR L+++ F++P C ++ + +LA+ P F+K+ E + +
Sbjct: 25 SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVS 84
Query: 174 HSLHIHVLPFFKFYRGSE 191
I +P F F++ S+
Sbjct: 85 EKYEISSVPTFLFFKNSQ 102
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFL-KVNYEELKTMCHSLHIHVLPFF 184
GD+ I+DFY+ CG CK + P + +L++ I++ KVN ++ + I +P
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTI 109
Query: 185 KF 186
F
Sbjct: 110 WF 111
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFL-KVNYEELKTMCHSLHIHVLPFF 184
GD V++DF++ CG C+ + P + + AE + + + + K+N +E I +P
Sbjct: 16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 185 KFYRGSE 191
++G E
Sbjct: 76 ILFKGGE 82
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 120 DALRNGGDRLVILDFYSPGCGGCKSLHPKICQL-AELNPNAIFLKVNYEELKTMCHSLHI 178
D L+N D+ V++DF++ CG C+ + P + + AE +K+N +E +
Sbjct: 18 DVLKN--DKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGV 75
Query: 179 HVLPFFKFYRGSE 191
+P Y+G E
Sbjct: 76 MSIPTLNVYQGGE 88
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFL-KVNYEELKTMCHSLHIHVLPFF 184
GD+ V++DF++ CG C+ + P + + AE + + + + K+N +E I +P
Sbjct: 16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 185 KFYRG 189
++G
Sbjct: 76 ILFKG 80
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFL-KVNYEELKTMCHSLHIHVLPFF 184
GD+ I+DFY+ CG CK + P + +L++ I++ KVN ++ + I +P
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTI 109
Query: 185 KF 186
F
Sbjct: 110 WF 111
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 129 LVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLP--FFKF 186
LV++DF++ CG C+ L + +AE N + F+KV+ ++ + + +P FF
Sbjct: 25 LVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVK 84
Query: 187 YRGSE-GHLCSF-----SCTNATIKKFK 208
G+E L F S A I+KFK
Sbjct: 85 KEGNEIKTLDQFVGADVSRIKADIEKFK 112
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 129 LVILDFYSPGCGGCKSLHPKICQLAE--LNPNAIFLKVNYEELKTMCHSLHIHVLPFFKF 186
LV+ +F++P CG CK++ P+ + AE + N +++ E + +C +I P K
Sbjct: 33 LVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKI 92
Query: 187 YRGSE 191
++ S+
Sbjct: 93 FKNSD 97
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 120 DALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNA 159
D + N + V++ +Y+P CG CK L P +LA+ NA
Sbjct: 369 DEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANA 408
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 130 VILDFYSPGCGGCKSLHPKICQLAEL---NPNAIFLKVNYEELKTMCHSLHIHVLPFFKF 186
V ++FY+P CG CK L P +L E + N + K++ ++ +H P KF
Sbjct: 270 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMD--STANEVEAVKVHSFPTLKF 327
Query: 187 YRGSEGHLCSFSCTNATIKKFKDALAKHGTD 217
+ S T+ FK L G D
Sbjct: 328 FPASADRTVIDYNGERTLDGFKKFLESGGQD 358
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 130 VILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYR 188
V++DF++P CG K + P I +LA E + K+N +E + +I +P F++
Sbjct: 21 VMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 80
Query: 189 GSE 191
E
Sbjct: 81 NGE 83
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 116 QELVDALRNGGDRLVILDFYSPGCGGCKSLHPKI----CQLAELNPNAIFLKVNYEELKT 171
++ D + N D +++++FY+P CG CK L P+ +L++ +P KV+ E
Sbjct: 14 KDNFDDVVNNAD-IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTD 72
Query: 172 MCHSLHIHVLPFFKFYR 188
+ + P K +R
Sbjct: 73 LAKRFDVSGYPTLKIFR 89
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 130 VILDFYSPGCGGCKSLHPKICQLAELNPNAIFL-KVNYEELKTMCHSL--HIHVLPFFKF 186
V+++FY+P CG CK+L PK +L L + F +V ++ + + I P K
Sbjct: 28 VLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIKL 87
Query: 187 Y-RGSEGHLCSFSCTNATIKKFKDALAKHGTDRCS 220
Y G++G ++S + T++ +A++G + +
Sbjct: 88 YPAGAKGQPVTYSGSR-TVEDLIKFIAENGKYKAA 121
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFL-KVNYEELKTMCHSLHIHVLPFF 184
GD V++DF++ CG C+ + P + + AE + + + + K+N +E I +P
Sbjct: 16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 185 KFYRG 189
++G
Sbjct: 76 ILFKG 80
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 128 RLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKF 186
+ V++ FYSP C CK+ P + A E +A+F ++N + P FKF
Sbjct: 25 KPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKF 84
Query: 187 Y 187
+
Sbjct: 85 F 85
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 128 RLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFY 187
+ ++DF++ C C L P I +LAE P F K+N +E + + LP F+
Sbjct: 17 EIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFF 76
Query: 188 RGSE 191
+ E
Sbjct: 77 KDGE 80
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 107 PNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKI----CQLAELNPNAIFL 162
P + + +E D + N D +++++FY+P CG CK L P+ +L++ +P
Sbjct: 128 PPEVTLVLTKENFDEVVNDAD-IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLA 186
Query: 163 KVNYEELKTMCHSLHIHVLPFFKFYR 188
KV+ + + P K +R
Sbjct: 187 KVDATAETDLAKRFDVSGYPTLKIFR 212
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 130 VILDFYSPGCGGCKSLHPKICQLAEL 155
V+L+FY+P CG CK P+ ++A +
Sbjct: 35 VLLEFYAPWCGHCKQFAPEYEKIANI 60
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 128 RLVILDFYSPGCGGCKSLHPKICQLA---ELNPNAIFL-KVNYEELKTMCHSLHIHVLPF 183
+ ++++FY+P CG CK+L P+ + A + + I L KV+ E + + P
Sbjct: 25 KYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPT 84
Query: 184 FKFYRGSE 191
KF+R +
Sbjct: 85 IKFFRNGD 92
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 103 KTLKPNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAI-F 161
KT P ++E A E A G L ++DF++P CG C+ + P + +LA + +
Sbjct: 29 KTPLPWVVE---ADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKV 85
Query: 162 LKVNYEELKTMCHSLHIHVLPFFKFYR 188
+KVN +E + + +P +R
Sbjct: 86 VKVNVDEHPGLAARYGVRSVPTLVLFR 112
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFL-KVNYEELKTMCHSLHIHVLPFFKFYR 188
++DFY+P CG C++ P+ LA + + KV+ + C I P K Y+
Sbjct: 25 VVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQ 83
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 130 VILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYR 188
V++DF++P CG C+ + P + ++A E +K+N +E + I +P ++
Sbjct: 22 VLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFK 81
Query: 189 GSE 191
G +
Sbjct: 82 GGK 84
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 120 DALRNGGDRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHI 178
D L+ G LV++DF++ CG CK + P + ++ E KVN ++ ++ +
Sbjct: 15 DVLKASG--LVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQV 72
Query: 179 HVLPFFKFYR 188
+P R
Sbjct: 73 RSIPTLMLVR 82
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 130 VILDFYSPGCGGCKSLHPKICQLAEL---NPNAIFLKVNYEELKTMCHSLHIHVLPFFKF 186
V ++FY+P CG CK L P +L E + N + K++ ++ +H P KF
Sbjct: 28 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMD--STANEVEAVKVHSFPTLKF 85
Query: 187 YRGSEGHLCSFSCTNATIKKFKDAL 211
+ S T+ FK L
Sbjct: 86 FPASADRTVIDYNGERTLDGFKKFL 110
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLA 153
D+ V++DF++P CG C+ + P I +LA
Sbjct: 19 DKPVLVDFWAPWCGPCRMIAPIIEELA 45
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185
D +++DF++ CG CK + P + ++A E K+N ++ I +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 186 FYRGSEGHLCSF-SCTNATIKKFKDA 210
++ E C + + +K+F DA
Sbjct: 80 LFKNGEVAACKVGALSKGQLKEFLDA 105
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKI-CQLAELNPNAIFLKVNYEELKTMCHSLHIHVLP-FF 184
D +++DF++P CG C+ + P+ A L K++ + + I +P F
Sbjct: 64 DLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFI 123
Query: 185 KFYRGSE 191
F++G E
Sbjct: 124 LFHKGRE 130
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 107 PNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAE 154
P +I ++ + DA N G+ L ++FYSPGC C L P + A+
Sbjct: 97 PEIITLERRE--FDAAVNSGE-LWFVNFYSPGCSHCHDLAPTWREFAK 141
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 124 NGGDRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLP 182
G L++++F++P CG CK L P+ A L KV+ C+ + P
Sbjct: 18 TGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYP 77
Query: 183 FFKFYRGSE 191
K +R E
Sbjct: 78 TLKIFRDGE 86
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 129 LVILDFYSPGCGGCKSLHPKICQL-AELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFY 187
+V+ DF++P CG CK + P + +L E+ +K++ +E + + +P
Sbjct: 19 VVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVL 78
Query: 188 RGSE 191
+ E
Sbjct: 79 KDGE 82
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFL-KVNYEELKTMCHSLHIHVLPFFK 185
D L +++FY+P CG C+ L P+ + A + + + VN ++ +++ + P K
Sbjct: 35 DGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIK 94
Query: 186 FY 187
+
Sbjct: 95 IF 96
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 107 PNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKV-- 164
P+++++ S ++ + + D L + F + CG CK++ + ++A P F KV
Sbjct: 19 PSVVDVYSVEQFRNIMSE--DILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDA 76
Query: 165 -NYEELKTMCHSLHIHVLPFFKFYRGSE--GHL 194
N E+ + C L LP F R + GH+
Sbjct: 77 DNNSEIVSKCRVLQ---LPTFIIARSGKMLGHV 106
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 130 VILDFYSPGCGGCKSLHPKICQLA----ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185
V+L+FY+P CG CK P+ ++A + +P K++ + + P K
Sbjct: 37 VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIK 96
Query: 186 FYR 188
+
Sbjct: 97 ILK 99
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 125 GGDRLVILDFYSPGCGGCKSLHPKICQLAEL--NPNAIFLKVNYEELKTMCHSLHIHVLP 182
GD+L++L F++ CK+L ++ N N FL ++ +E + I +P
Sbjct: 19 AGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVP 78
Query: 183 FF 184
+F
Sbjct: 79 YF 80
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKV 164
+L F++P C C + P + Q+A NP F+ +
Sbjct: 28 VLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGI 61
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 112 IQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQL-AELNPNAIFLKVNYEELK 170
IQ + D + N + V++DF++ CG CK L P++ ++ A+ + + KV+ ++
Sbjct: 17 IQDGPDFQDRVVNS-ETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHT 75
Query: 171 TMCHSLHIHVLP 182
+ + +P
Sbjct: 76 DLAIEYEVSAVP 87
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFL-KVNYEELKTMCHSLHIHVLPFFK 185
D +++DF++ CG CK + P + ++AE + + K+N ++ I +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 186 FYRGSEGHLCSF-SCTNATIKKFKDA 210
++ E + + +K+F DA
Sbjct: 80 LFKNGEVAATKVGALSKGQLKEFLDA 105
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185
D +++DF++ CG CK + P + ++A E K+N ++ I +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRSIPTLL 79
Query: 186 FYRGSEGHLCSF-SCTNATIKKFKDA 210
++ E + + +K+F DA
Sbjct: 80 LFKNGEVAATKVGALSKGQLKEFLDA 105
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 9/116 (7%)
Query: 120 DALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAEL---NPNAIFLKVNYEELKTMCHSL 176
DA+ + V+++FY+P CG CK L P L + + + K++
Sbjct: 18 DAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQY 77
Query: 177 HIHVLPFFKFY-RGSEGHLCSFSCTNATIKKFKDALAKHGTDRCSL-----GPAKG 226
+ P F G + + F N ++ + +H T R GP+ G
Sbjct: 78 KVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRTKEELSGPSSG 133
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 131 ILDFYSPGCGGCKSLHPKICQL-AELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRG 189
++DF++ CG CK + P + +L A+ A LK++ +E + + +P ++
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 190 SE 191
+
Sbjct: 83 GQ 84
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185
D +++DF++ CG CK + P + ++A E K+N ++ I +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 186 FYRGSEGHLCSF-SCTNATIKKFKDA 210
++ E + + +K+F DA
Sbjct: 80 LFKNGEVAATKVGALSKGQLKEFLDA 105
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185
D +++DF++ CG CK + P + ++A E K+N ++ I +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 186 FYRGSEGHLCSF-SCTNATIKKFKDA 210
++ E + + +K+F DA
Sbjct: 80 LFKNGEVAATKVGALSKGQLKEFLDA 105
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185
D +++DF++ CG CK + P + ++A E K+N ++ I +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 186 FYRGSEGHLCSF-SCTNATIKKFKDA 210
++ E + + +K+F DA
Sbjct: 80 LFKNGEVAATKVGALSKGQLKEFLDA 105
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185
D +++DF++ CG CK + P + ++A E K+N ++ I +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 186 FYRGSEGHLCSF-SCTNATIKKFKDA 210
++ E + + +K+F DA
Sbjct: 80 LFKNGEVAATKVGALSKGQLKEFLDA 105
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185
D +++DF++ CG CK + P + ++A E K+N ++ I +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 186 FYRGSEGHLCSF-SCTNATIKKFKDA 210
++ E + + +K+F DA
Sbjct: 80 LFKNGEVAATKVGALSKGQLKEFLDA 105
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185
D +++DF++ CG CK + P + ++A E K+N ++ I +P
Sbjct: 30 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 89
Query: 186 FYRGSEGHLCSF-SCTNATIKKFKDA 210
++ E + + +K+F DA
Sbjct: 90 LFKNGEVAATKVGALSKGQLKEFLDA 115
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 129 LVILDFYSPGCGGCKSLHPKICQLAELN-PNAIFLK---VNYEELKTMCHSLHIHVLPFF 184
+ + FY+P CG CK+L P +L++ P +K V+ + +C + P
Sbjct: 25 ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 84
Query: 185 KFYRGSE 191
+RG +
Sbjct: 85 LLFRGGK 91
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 131 ILDFYSPGCGGCKSLHPKICQL-AELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRG 189
++DF++ CG CK + P + +L A+ A LK++ +E + + +P ++
Sbjct: 23 LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 190 SE 191
+
Sbjct: 83 GQ 84
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185
D +++DF++ CG CK + P + ++A E K+N ++ I +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 186 FYRGSEGHLCSF-SCTNATIKKFKDA 210
++ E + + +K+F DA
Sbjct: 80 LFKNGEVAATKVGALSKGQLKEFLDA 105
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 130 VILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYR 188
+++DF + CG CK + P L+ + IFLKV+ + + + + I +P F Y+
Sbjct: 27 IVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYK 86
Query: 189 GSEGHLCSFSCTNATIKKFKDALAKH 214
+ + A+ K K +AKH
Sbjct: 87 DG---VKADDLVGASQDKLKALVAKH 109
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 131 ILDFYSPGCGGCKSLHPKICQL-AELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRG 189
++DF++ CG CK + P + +L A+ A LK++ +E + + +P ++
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 190 SE 191
+
Sbjct: 84 GQ 85
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185
D +++DF++ CG CK + P + ++A E K+N ++ I +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 186 FYRGSEGHLCSF-SCTNATIKKFKDA 210
++ E + + +K+F DA
Sbjct: 80 LFKNGEVAATKVGALSKGQLKEFLDA 105
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185
D +++DF++ CG CK + P + ++A E K+N ++ I +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 186 FYRGSEGHLCSF-SCTNATIKKFKDA 210
++ E + + +K+F DA
Sbjct: 80 LFKNGEVAATKVGALSKGQLKEFLDA 105
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185
D +++DF++ CG CK + P + ++A E K+N ++ I +P
Sbjct: 20 DGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 186 FYRGSEGHLCSF-SCTNATIKKFKDA 210
++ E + + +K+F DA
Sbjct: 80 LFKNGEVAATKVGALSKGQLKEFLDA 105
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 129 LVILDFYSPGCGGCKSLHPKICQLAELN-PNAIFLK---VNYEELKTMCHSLHIHVLPFF 184
+ + FY+P CG CK+L P +L++ P +K V+ + +C + P
Sbjct: 23 ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 82
Query: 185 KFYRGSE 191
+RG +
Sbjct: 83 LLFRGGK 89
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 131 ILDFYSPGCGGCKSLHPKICQL-AELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRG 189
++DF++ CG CK + P + +L A+ A LK++ +E + + +P ++
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 190 SE 191
+
Sbjct: 84 GQ 85
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 129 LVILDFYSPGCGGCKSLHPKICQLAELN-PNAIFLK---VNYEELKTMCHSLHIHVLPFF 184
+ + FY+P CG CK+L P +L++ P +K V+ + +C + P
Sbjct: 18 ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 77
Query: 185 KFYRGSE 191
+RG +
Sbjct: 78 LLFRGGK 84
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185
D +++DF++ CG CK + P + +A E K+N ++ I +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 186 FYRGSEGHLCSF-SCTNATIKKFKDA 210
++ E + + +K+F DA
Sbjct: 80 LFKNGEVAATKVGALSKGQLKEFLDA 105
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 106 KPNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKV 164
K I++ A D L ++ V++DF++ CG CK + P + ++A E + K+
Sbjct: 11 KSATIKVTDASFATDVL--SSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKL 68
Query: 165 NYEELKTMCHSLHIHVLPFFKFYRGSE 191
+ + + + +P ++ +
Sbjct: 69 DVDTNPETARNFQVVSIPTLILFKDGQ 95
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLP-FF 184
D +++DF++ CG CK + P + ++A E K+N ++ I +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 185 KFYRGSEGHLCSFSCTNATIKKFKDA 210
F G + + +K+F DA
Sbjct: 80 LFKNGDVAATKVGALSKGQLKEFLDA 105
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185
D +++DF++ CG CK + P + ++A E K+N ++ I +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 186 FYRGSE 191
++ E
Sbjct: 80 LFKNGE 85
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185
D +++DF++ CG CK + P + ++A E K+N ++ I P
Sbjct: 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGTPTLL 80
Query: 186 FYRGSEGHLCSF-SCTNATIKKFKDA 210
++ E + + +K+F DA
Sbjct: 81 LFKNGEVAATKVGALSKGQLKEFLDA 106
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 131 ILDFYSPGCGGCKSLHPKICQLA 153
+++FY+P CG CK+L P+ A
Sbjct: 29 MVEFYAPWCGHCKNLEPEWAAAA 51
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFL-KVNYEELKTMCHSLHIHVLPFFK 185
D +++DF++ CG CK + P + ++A+ + + K+N ++ I +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 186 FYRGSEGHLCSF-SCTNATIKKFKDA 210
++ E + + +K+F DA
Sbjct: 80 LFKNGEVAATKVGALSKGQLKEFLDA 105
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 108 NMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSL 145
N +I++ EL AL + V+LD Y+ C CK
Sbjct: 12 NFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEF 49
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 108 NMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSL 145
N +I++ EL AL + V+LD Y+ C CK
Sbjct: 9 NFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEF 46
>pdb|3LLX|A Chain A, Crystal Structure Of An Ala Racemase-like Protein (il1761)
From Idiomarina Loihiensis At 1.50 A Resolution
Length = 376
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 162 LKVNYEELKTMCHSLHIHVLPFFKFYRGSE--GHLCSFSCTNATIKKFKDALAKHGTDRC 219
LK N LK SL H+ P R E G+L AT+ +A A
Sbjct: 24 LKSNINYLKQRVESLGSHLRPHLXTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYT 83
Query: 220 SLGPAKGLDESELLKLASINELSINLPL 247
L A G+ ++L ++A++ + INL +
Sbjct: 84 DLLYAVGIAPAKLKRVAALRQQGINLHI 111
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 106 KPNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKV 164
K I++ A D L ++ V++DF++ CG CK + P + ++A E + K+
Sbjct: 6 KSATIKVTDASFATDVL--SSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKL 63
Query: 165 NYEELKTMCHSLHIHVLPFFKFYRGSE 191
+ + + + +P ++ +
Sbjct: 64 DVDTNPETARNFQVVSIPTLILFKDGQ 90
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185
D +++DF++ CG CK + P + ++A E K+N ++ I +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 186 FYRGSE 191
++ E
Sbjct: 80 LFKNGE 85
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185
D +++DF++ CG C+ + P + ++A E K+N ++ I +P
Sbjct: 20 DGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 186 FYRGSEGHLCSF-SCTNATIKKFKDA 210
++ E + + +K+F DA
Sbjct: 80 LFKNGEVAATKVGALSKGQLKEFLDA 105
>pdb|2L5O|A Chain A, Solution Structure Of A Putative Thioredoxin From
Neisseria Meningitidis
Length = 153
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 128 RLVILDFYSPGCGGCKSLHPKICQLAELNPNAIF----LKVNYEELKTMCHSLHIHVLPF 183
++ +++F+ P C GC S PKI + A N F + + ++++ + + LPF
Sbjct: 29 KVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPF 88
Query: 184 FKFY 187
Y
Sbjct: 89 TVMY 92
>pdb|1FX7|A Chain A, Crystal Structure Of The Iron-Dependent Regulator (Ider)
From Mycobacterium Tuberculosis
pdb|1FX7|B Chain B, Crystal Structure Of The Iron-Dependent Regulator (Ider)
From Mycobacterium Tuberculosis
pdb|1FX7|C Chain C, Crystal Structure Of The Iron-Dependent Regulator (Ider)
From Mycobacterium Tuberculosis
pdb|1FX7|D Chain D, Crystal Structure Of The Iron-Dependent Regulator (Ider)
From Mycobacterium Tuberculosis
pdb|1U8R|A Chain A, Crystal Structure Of An Ider-dna Complex Reveals A
Conformational Change In Activated Ider For
Base-specific Interactions
pdb|1U8R|B Chain B, Crystal Structure Of An Ider-dna Complex Reveals A
Conformational Change In Activated Ider For
Base-specific Interactions
pdb|1U8R|C Chain C, Crystal Structure Of An Ider-dna Complex Reveals A
Conformational Change In Activated Ider For
Base-specific Interactions
pdb|1U8R|D Chain D, Crystal Structure Of An Ider-dna Complex Reveals A
Conformational Change In Activated Ider For
Base-specific Interactions
pdb|1U8R|G Chain G, Crystal Structure Of An Ider-dna Complex Reveals A
Conformational Change In Activated Ider For
Base-specific Interactions
pdb|1U8R|H Chain H, Crystal Structure Of An Ider-dna Complex Reveals A
Conformational Change In Activated Ider For
Base-specific Interactions
pdb|1U8R|I Chain I, Crystal Structure Of An Ider-dna Complex Reveals A
Conformational Change In Activated Ider For
Base-specific Interactions
pdb|1U8R|J Chain J, Crystal Structure Of An Ider-dna Complex Reveals A
Conformational Change In Activated Ider For
Base-specific Interactions
Length = 230
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 201 NATIKKFKDALAKHGTDRCSLGPAKGLDESELLKLASINELSINLPLPSAVGEEVEDLVM 260
N T F + + G D +GP G D++ L++L EL P+ V + E +
Sbjct: 122 NPTTSPFGNPIP--GLDELGVGPEPGADDANLVRL---TELPAGSPVAVVVRQLTEHV-- 174
Query: 261 QSSIDLSGILSKAG 274
Q IDL L AG
Sbjct: 175 QGDIDLITRLKDAG 188
>pdb|2LLK|A Chain A, Solution Nmr Structure Of The N-Terminal Myb-Like 1 Domain
Of The Human Cyclin-D-Binding Transcription Factor 1
(Hdmp1), Northeast Structural Genomics Consortium (Nesg)
Target Id Hr8011a
Length = 73
Score = 27.7 bits (60), Expect = 6.8, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 186 FYRGSEGHLCSFSCTNATIKKFKDALAKHGTDRCSLGPAKGLDESEL 232
+++G H+ + T I+K K+ KHG D ++G A G S +
Sbjct: 15 YFQGDRNHVGKY--TPEEIEKLKELRIKHGNDWATIGAALGRSASSV 59
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 127 DRLVILDFYSPGCGGCKSLHPKICQLAE 154
D +++DF++ CG CK + P + ++A+
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIAD 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,110,481
Number of Sequences: 62578
Number of extensions: 318666
Number of successful extensions: 870
Number of sequences better than 100.0: 129
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 133
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)