Query 023089
Match_columns 287
No_of_seqs 420 out of 1844
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:21:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 5.1E-29 1.1E-33 235.7 8.3 187 20-216 279-474 (493)
2 PTZ00102 disulphide isomerase; 99.9 4.9E-24 1.1E-28 205.7 14.3 188 20-217 271-467 (477)
3 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.7E-22 3.8E-27 158.5 13.1 103 106-211 8-113 (113)
4 KOG0910 Thioredoxin-like prote 99.9 1E-22 2.2E-27 164.1 11.9 104 109-215 44-148 (150)
5 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 5.4E-22 1.2E-26 152.9 12.8 101 108-211 2-104 (104)
6 TIGR01130 ER_PDI_fam protein d 99.9 1.7E-22 3.7E-27 193.6 12.0 179 20-219 259-458 (462)
7 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 5.9E-22 1.3E-26 152.1 12.5 98 108-210 2-100 (101)
8 PF00085 Thioredoxin: Thioredo 99.9 1.7E-21 3.6E-26 148.9 14.5 101 110-214 2-103 (103)
9 cd02999 PDI_a_ERp44_like PDIa 99.9 8.2E-22 1.8E-26 151.5 11.6 93 116-211 7-100 (100)
10 cd02954 DIM1 Dim1 family; Dim1 99.9 1.9E-21 4.1E-26 151.9 11.7 98 115-214 2-110 (114)
11 cd02985 TRX_CDSP32 TRX family, 99.9 7.2E-21 1.6E-25 146.9 14.3 98 114-214 2-102 (103)
12 KOG0907 Thioredoxin [Posttrans 99.9 5.6E-21 1.2E-25 147.9 13.4 92 120-214 14-105 (106)
13 cd02996 PDI_a_ERp44 PDIa famil 99.9 3.7E-21 8E-26 149.5 12.5 100 108-211 2-108 (108)
14 PHA02278 thioredoxin-like prot 99.9 5.4E-21 1.2E-25 147.6 13.0 94 113-210 2-100 (103)
15 cd02956 ybbN ybbN protein fami 99.9 1E-20 2.3E-25 143.5 12.2 94 117-212 2-96 (96)
16 PLN00410 U5 snRNP protein, DIM 99.8 1.8E-20 4E-25 151.8 13.7 106 109-215 5-120 (142)
17 cd02948 TRX_NDPK TRX domain, T 99.8 7.8E-20 1.7E-24 140.8 14.2 97 111-213 3-101 (102)
18 cd02994 PDI_a_TMX PDIa family, 99.8 5.5E-20 1.2E-24 140.9 13.1 98 108-213 2-101 (101)
19 cd03065 PDI_b_Calsequestrin_N 99.8 3.9E-20 8.4E-25 146.4 12.4 102 108-214 10-118 (120)
20 cd02963 TRX_DnaJ TRX domain, D 99.8 4.6E-20 9.9E-25 144.4 12.4 98 114-213 10-110 (111)
21 cd03002 PDI_a_MPD1_like PDI fa 99.8 4.8E-20 1E-24 142.9 12.3 100 109-211 2-108 (109)
22 cd02989 Phd_like_TxnDC9 Phosdu 99.8 1E-19 2.2E-24 143.0 13.4 83 107-191 4-86 (113)
23 COG3118 Thioredoxin domain-con 99.8 3.4E-20 7.4E-25 164.3 11.6 107 108-217 24-132 (304)
24 cd02986 DLP Dim1 family, Dim1- 99.8 1.1E-19 2.4E-24 141.1 12.1 99 115-213 2-109 (114)
25 cd03001 PDI_a_P5 PDIa family, 99.8 1.7E-19 3.7E-24 138.2 13.1 100 109-211 2-102 (103)
26 cd02993 PDI_a_APS_reductase PD 99.8 1.1E-19 2.3E-24 141.7 12.0 102 109-211 3-109 (109)
27 PRK09381 trxA thioredoxin; Pro 99.8 3.3E-19 7.1E-24 138.6 14.6 105 107-215 3-108 (109)
28 cd03005 PDI_a_ERp46 PDIa famil 99.8 1.4E-19 3.1E-24 138.4 12.3 97 109-211 2-102 (102)
29 PTZ00443 Thioredoxin domain-co 99.8 3.2E-19 7E-24 155.6 15.6 108 107-217 30-141 (224)
30 KOG0908 Thioredoxin-like prote 99.8 1.5E-19 3.2E-24 155.6 12.6 110 107-219 1-110 (288)
31 cd02957 Phd_like Phosducin (Ph 99.8 3.5E-19 7.7E-24 139.7 13.5 83 107-191 4-87 (113)
32 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 4.7E-19 1E-23 135.7 11.6 100 108-211 1-104 (104)
33 cd03007 PDI_a_ERp29_N PDIa fam 99.8 3.2E-19 6.8E-24 139.8 10.7 99 109-214 3-115 (116)
34 KOG0190 Protein disulfide isom 99.8 1.9E-19 4E-24 170.9 10.5 107 105-216 23-133 (493)
35 cd02962 TMX2 TMX2 family; comp 99.8 1.2E-18 2.6E-23 143.5 13.8 90 107-198 28-125 (152)
36 PTZ00051 thioredoxin; Provisio 99.8 1.7E-18 3.7E-23 131.7 13.3 95 109-208 2-96 (98)
37 PRK10996 thioredoxin 2; Provis 99.8 3E-18 6.4E-23 139.4 15.2 102 108-214 36-138 (139)
38 TIGR01126 pdi_dom protein disu 99.8 1.4E-18 3E-23 132.4 12.3 97 114-214 2-101 (102)
39 cd02987 Phd_like_Phd Phosducin 99.8 1.7E-18 3.6E-23 146.2 13.7 108 106-214 61-174 (175)
40 cd02984 TRX_PICOT TRX domain, 99.8 2.5E-18 5.4E-23 130.5 13.1 95 114-211 1-96 (97)
41 cd02997 PDI_a_PDIR PDIa family 99.8 2E-18 4.4E-23 132.3 12.6 98 109-211 2-104 (104)
42 cd02998 PDI_a_ERp38 PDIa famil 99.8 2.4E-18 5.2E-23 131.8 10.9 100 109-211 2-105 (105)
43 cd02953 DsbDgamma DsbD gamma f 99.8 1.7E-18 3.7E-23 133.5 9.5 94 116-212 2-104 (104)
44 cd03000 PDI_a_TMX3 PDIa family 99.8 5.3E-18 1.2E-22 130.8 11.4 93 116-214 7-103 (104)
45 TIGR00424 APS_reduc 5'-adenyly 99.8 5.5E-18 1.2E-22 161.5 13.9 107 106-213 350-461 (463)
46 PLN02309 5'-adenylylsulfate re 99.8 6.3E-18 1.4E-22 161.0 14.3 108 106-214 344-456 (457)
47 KOG4277 Uncharacterized conser 99.8 1.4E-18 3E-23 153.3 9.0 89 125-216 41-133 (468)
48 TIGR01068 thioredoxin thioredo 99.8 1.5E-17 3.2E-22 126.3 13.4 98 114-214 2-100 (101)
49 cd02965 HyaE HyaE family; HyaE 99.8 1E-17 2.3E-22 130.0 11.7 91 114-208 16-109 (111)
50 cd02950 TxlA TRX-like protein 99.7 2.3E-17 5E-22 134.7 13.2 100 116-218 11-113 (142)
51 cd02961 PDI_a_family Protein D 99.7 1.4E-17 3E-22 125.7 10.9 95 114-211 4-101 (101)
52 cd02975 PfPDO_like_N Pyrococcu 99.7 4.5E-17 9.8E-22 127.9 12.6 94 118-214 15-109 (113)
53 cd02949 TRX_NTR TRX domain, no 99.7 6E-17 1.3E-21 123.4 12.9 91 119-212 6-97 (97)
54 cd02992 PDI_a_QSOX PDIa family 99.7 4.1E-17 8.8E-22 128.3 11.7 101 108-210 2-111 (114)
55 KOG0191 Thioredoxin/protein di 99.7 2.4E-17 5.3E-22 155.4 10.2 178 20-217 71-254 (383)
56 TIGR02187 GlrX_arch Glutaredox 99.7 1.2E-16 2.6E-21 139.2 13.6 164 20-213 46-214 (215)
57 cd02988 Phd_like_VIAF Phosduci 99.7 2.7E-16 5.9E-21 134.5 14.0 105 106-214 81-191 (192)
58 TIGR01295 PedC_BrcD bacterioci 99.7 4.9E-16 1.1E-20 123.6 12.9 98 110-212 9-121 (122)
59 cd02947 TRX_family TRX family; 99.7 4.8E-16 1.1E-20 114.9 11.6 91 117-211 2-92 (93)
60 TIGR01130 ER_PDI_fam protein d 99.7 4.2E-16 9.1E-21 149.4 13.9 104 109-216 3-110 (462)
61 PTZ00102 disulphide isomerase; 99.7 5.5E-16 1.2E-20 149.7 14.4 103 108-216 33-139 (477)
62 cd02951 SoxW SoxW family; SoxW 99.7 7.7E-16 1.7E-20 122.6 11.9 99 116-216 4-120 (125)
63 cd02952 TRP14_like Human TRX-r 99.7 6.3E-16 1.4E-20 122.0 10.9 98 111-211 5-118 (119)
64 cd02982 PDI_b'_family Protein 99.6 6.9E-15 1.5E-19 112.6 10.7 88 127-214 12-102 (103)
65 PTZ00062 glutaredoxin; Provisi 99.6 1.2E-14 2.5E-19 125.2 12.9 92 113-216 4-95 (204)
66 KOG0912 Thiol-disulfide isomer 99.6 4.2E-15 9.1E-20 131.5 8.9 99 116-217 4-108 (375)
67 TIGR00411 redox_disulf_1 small 99.6 5.3E-14 1.1E-18 103.2 10.9 79 130-214 2-81 (82)
68 TIGR02187 GlrX_arch Glutaredox 99.5 5.2E-14 1.1E-18 122.7 11.9 88 126-215 18-111 (215)
69 KOG0191 Thioredoxin/protein di 99.5 5.7E-14 1.2E-18 132.5 10.1 100 116-218 37-137 (383)
70 cd02959 ERp19 Endoplasmic reti 99.5 2.7E-14 5.8E-19 112.8 6.5 89 125-214 17-112 (117)
71 PRK00293 dipZ thiol:disulfide 99.5 1.4E-13 3.1E-18 135.8 13.1 106 108-214 453-569 (571)
72 PHA02125 thioredoxin-like prot 99.5 1.6E-13 3.4E-18 99.7 9.9 72 131-211 2-73 (75)
73 TIGR02740 TraF-like TraF-like 99.4 1.9E-12 4.1E-17 116.5 13.6 90 126-216 165-265 (271)
74 TIGR02738 TrbB type-F conjugat 99.4 2.3E-12 4.9E-17 106.4 11.9 88 126-214 49-152 (153)
75 TIGR00412 redox_disulf_2 small 99.4 1.6E-12 3.6E-17 94.7 9.8 72 131-211 2-75 (76)
76 cd02973 TRX_GRX_like Thioredox 99.4 1.2E-12 2.7E-17 92.5 7.6 56 131-186 3-58 (67)
77 cd02955 SSP411 TRX domain, SSP 99.4 3.1E-12 6.7E-17 101.9 10.7 79 115-196 5-95 (124)
78 KOG1731 FAD-dependent sulfhydr 99.4 1.7E-13 3.8E-18 130.4 4.0 82 107-190 39-126 (606)
79 PF13098 Thioredoxin_2: Thiore 99.4 1.6E-12 3.5E-17 101.0 8.8 86 125-211 3-112 (112)
80 PRK14018 trifunctional thiored 99.4 5.3E-12 1.1E-16 122.2 12.4 89 125-214 54-172 (521)
81 PRK15412 thiol:disulfide inter 99.4 1.2E-11 2.5E-16 105.4 12.5 87 126-215 67-176 (185)
82 TIGR00385 dsbE periplasmic pro 99.3 1.6E-11 3.5E-16 103.3 11.6 87 126-215 62-171 (173)
83 cd03010 TlpA_like_DsbE TlpA-li 99.3 1.6E-11 3.4E-16 97.7 10.8 80 126-207 24-126 (127)
84 cd03008 TryX_like_RdCVF Trypar 99.3 1.1E-11 2.3E-16 101.4 9.4 72 126-198 24-129 (146)
85 cd02964 TryX_like_family Trypa 99.3 1.3E-11 2.8E-16 99.2 8.6 72 126-198 16-116 (132)
86 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 6.2E-11 1.3E-15 89.0 11.2 77 126-208 11-87 (89)
87 cd03009 TryX_like_TryX_NRX Try 99.3 2.1E-11 4.6E-16 97.5 9.3 72 126-198 17-116 (131)
88 PRK03147 thiol-disulfide oxido 99.3 5.8E-11 1.3E-15 99.2 12.0 88 126-214 60-171 (173)
89 PF13905 Thioredoxin_8: Thiore 99.3 3.7E-11 8.1E-16 90.6 9.7 63 127-189 1-91 (95)
90 cd02966 TlpA_like_family TlpA- 99.2 1.5E-10 3.3E-15 88.5 9.9 71 126-197 18-113 (116)
91 cd03011 TlpA_like_ScsD_MtbDsbE 99.2 1.7E-10 3.7E-15 91.0 9.9 82 126-210 19-121 (123)
92 COG4232 Thiol:disulfide interc 99.2 1.3E-10 2.7E-15 112.2 9.7 103 111-214 458-567 (569)
93 PLN02919 haloacid dehalogenase 99.1 2.9E-10 6.3E-15 119.5 12.5 90 126-216 419-537 (1057)
94 cd02958 UAS UAS family; UAS is 99.1 7.7E-10 1.7E-14 86.6 12.0 91 125-215 15-111 (114)
95 PRK13728 conjugal transfer pro 99.1 8.3E-10 1.8E-14 93.1 11.8 84 131-216 73-172 (181)
96 PRK11509 hydrogenase-1 operon 99.1 1.8E-09 3.8E-14 86.5 12.5 98 116-217 25-126 (132)
97 cd03012 TlpA_like_DipZ_like Tl 99.0 1.8E-09 4E-14 85.8 10.3 74 126-200 22-124 (126)
98 PF02114 Phosducin: Phosducin; 99.0 7.4E-10 1.6E-14 99.2 8.4 110 107-217 125-240 (265)
99 cd02967 mauD Methylamine utili 99.0 5.1E-10 1.1E-14 87.1 6.4 63 126-188 20-103 (114)
100 PF13848 Thioredoxin_6: Thiore 99.0 6.5E-09 1.4E-13 87.3 12.2 165 20-213 14-184 (184)
101 KOG1672 ATP binding protein [P 99.0 1.9E-09 4.1E-14 90.3 8.6 95 101-197 60-156 (211)
102 PF08534 Redoxin: Redoxin; In 99.0 4.2E-09 9.2E-14 85.6 10.6 77 126-203 27-136 (146)
103 PF13899 Thioredoxin_7: Thiore 99.0 1.2E-09 2.6E-14 80.5 6.7 63 125-188 15-81 (82)
104 PTZ00056 glutathione peroxidas 99.0 3.5E-09 7.7E-14 91.2 10.1 90 126-216 38-179 (199)
105 TIGR02661 MauD methylamine deh 99.0 7.7E-09 1.7E-13 88.4 11.7 86 126-214 73-178 (189)
106 COG0526 TrxA Thiol-disulfide i 98.9 5.2E-09 1.1E-13 79.3 8.3 82 127-210 32-119 (127)
107 KOG0913 Thiol-disulfide isomer 98.9 3.1E-10 6.7E-15 97.6 1.5 98 109-214 26-125 (248)
108 cd02960 AGR Anterior Gradient 98.9 4.2E-09 9.1E-14 84.2 7.6 64 124-189 20-88 (130)
109 TIGR01626 ytfJ_HI0045 conserve 98.9 1.4E-08 3.1E-13 86.0 10.3 85 126-212 58-177 (184)
110 PLN02399 phospholipid hydroper 98.9 1.9E-08 4.1E-13 88.7 11.4 89 126-215 98-234 (236)
111 smart00594 UAS UAS domain. 98.9 3.6E-08 7.7E-13 78.3 11.6 87 125-211 25-121 (122)
112 KOG0914 Thioredoxin-like prote 98.8 5.4E-09 1.2E-13 89.0 6.0 84 108-191 125-216 (265)
113 PLN02412 probable glutathione 98.8 4.2E-08 9.2E-13 82.1 10.8 90 126-216 28-165 (167)
114 TIGR02196 GlrX_YruB Glutaredox 98.8 2.8E-08 6.1E-13 70.4 8.3 69 131-212 2-74 (74)
115 cd02969 PRX_like1 Peroxiredoxi 98.8 7E-08 1.5E-12 80.8 12.0 91 126-217 24-154 (171)
116 cd01659 TRX_superfamily Thiore 98.8 2.7E-08 5.8E-13 67.0 7.7 60 131-190 1-63 (69)
117 PF13728 TraF: F plasmid trans 98.8 9.1E-08 2E-12 83.4 12.3 86 125-211 118-214 (215)
118 cd00340 GSH_Peroxidase Glutath 98.8 5E-08 1.1E-12 80.2 9.2 41 126-167 21-63 (152)
119 TIGR02540 gpx7 putative glutat 98.7 9.4E-08 2E-12 78.6 10.7 88 126-214 21-152 (153)
120 TIGR02200 GlrX_actino Glutared 98.7 8.2E-08 1.8E-12 69.0 8.3 70 131-212 2-76 (77)
121 PF14595 Thioredoxin_9: Thiore 98.7 1.8E-07 3.8E-12 75.1 9.5 92 118-212 32-126 (129)
122 KOG3414 Component of the U4/U6 98.6 3.9E-07 8.5E-12 71.2 10.4 105 110-214 6-119 (142)
123 cd03072 PDI_b'_ERp44 PDIb' fam 98.6 7E-09 1.5E-13 81.1 -0.7 62 20-85 38-104 (111)
124 KOG0911 Glutaredoxin-related p 98.6 9.7E-08 2.1E-12 82.0 5.7 100 108-214 2-101 (227)
125 PRK00522 tpx lipid hydroperoxi 98.5 1.2E-06 2.5E-11 73.4 11.5 86 126-212 43-166 (167)
126 TIGR02739 TraF type-F conjugat 98.5 1.5E-06 3.3E-11 77.3 12.1 89 126-215 149-248 (256)
127 cd03073 PDI_b'_ERp72_ERp57 PDI 98.5 1.4E-08 3.1E-13 79.3 -0.8 60 20-85 42-107 (111)
128 PF13192 Thioredoxin_3: Thiore 98.5 1.5E-06 3.2E-11 63.1 9.7 73 132-212 3-76 (76)
129 cd02983 P5_C P5 family, C-term 98.5 2.9E-08 6.4E-13 79.7 0.0 69 20-105 48-119 (130)
130 COG2143 Thioredoxin-related pr 98.5 2.8E-06 6E-11 69.1 11.0 89 125-214 40-148 (182)
131 PF00578 AhpC-TSA: AhpC/TSA fa 98.4 1.4E-06 3.1E-11 68.2 9.3 69 126-195 24-122 (124)
132 PF06110 DUF953: Eukaryotic pr 98.4 1.5E-06 3.3E-11 68.4 8.9 77 114-190 4-99 (119)
133 TIGR02180 GRX_euk Glutaredoxin 98.4 6.2E-07 1.3E-11 65.6 6.3 71 131-212 1-76 (84)
134 PTZ00256 glutathione peroxidas 98.4 1.8E-06 4E-11 73.2 9.9 89 126-215 39-181 (183)
135 KOG2501 Thioredoxin, nucleored 98.4 8.1E-07 1.7E-11 72.7 7.2 70 126-196 32-130 (157)
136 cd03014 PRX_Atyp2cys Peroxired 98.4 2E-06 4.3E-11 69.6 9.6 72 126-198 25-126 (143)
137 cd03017 PRX_BCP Peroxiredoxin 98.4 1.7E-06 3.7E-11 69.5 9.2 84 126-210 22-138 (140)
138 cd03015 PRX_Typ2cys Peroxiredo 98.4 3.8E-06 8.2E-11 70.5 10.6 88 126-214 28-156 (173)
139 PF03190 Thioredox_DsbH: Prote 98.4 1.6E-06 3.5E-11 71.8 7.9 95 99-196 10-117 (163)
140 PRK11200 grxA glutaredoxin 1; 98.4 2E-06 4.4E-11 63.6 7.7 76 130-215 2-83 (85)
141 cd02991 UAS_ETEA UAS family, E 98.3 1.2E-05 2.5E-10 63.3 11.8 90 124-215 14-113 (116)
142 TIGR03137 AhpC peroxiredoxin. 98.3 5.5E-06 1.2E-10 70.6 10.7 88 126-214 30-155 (187)
143 PRK13703 conjugal pilus assemb 98.3 6.3E-06 1.4E-10 73.0 10.9 90 126-215 142-241 (248)
144 TIGR03143 AhpF_homolog putativ 98.3 1.1E-05 2.4E-10 79.9 13.2 152 27-211 396-554 (555)
145 PF02966 DIM1: Mitosis protein 98.3 1.3E-05 2.9E-10 63.4 10.7 103 110-213 3-115 (133)
146 cd02976 NrdH NrdH-redoxin (Nrd 98.2 9E-06 1.9E-10 57.2 8.4 67 131-210 2-72 (73)
147 PRK10606 btuE putative glutath 98.2 1.1E-05 2.5E-10 68.5 9.6 41 126-167 24-66 (183)
148 cd03018 PRX_AhpE_like Peroxire 98.2 1.6E-05 3.4E-10 64.6 10.1 84 127-211 28-147 (149)
149 cd02970 PRX_like2 Peroxiredoxi 98.2 1.6E-05 3.5E-10 64.2 9.9 43 127-169 24-68 (149)
150 cd02981 PDI_b_family Protein D 98.2 2.8E-05 6.2E-10 58.4 10.5 94 110-213 2-96 (97)
151 PRK09437 bcp thioredoxin-depen 98.1 2.3E-05 5.1E-10 64.2 10.2 82 126-208 29-146 (154)
152 PRK10382 alkyl hydroperoxide r 98.1 3.9E-05 8.4E-10 65.5 11.5 88 126-214 30-155 (187)
153 KOG3425 Uncharacterized conser 98.1 2E-05 4.4E-10 61.3 7.9 75 115-189 12-104 (128)
154 PRK13190 putative peroxiredoxi 98.1 3.7E-05 7.9E-10 66.4 10.5 88 127-215 27-154 (202)
155 TIGR02183 GRXA Glutaredoxin, G 98.1 3E-05 6.4E-10 57.6 8.6 74 131-214 2-81 (86)
156 cd02983 P5_C P5 family, C-term 98.1 0.00019 4.2E-09 57.6 13.8 110 107-219 2-119 (130)
157 PRK15317 alkyl hydroperoxide r 98.0 4.7E-05 1E-09 74.8 12.1 90 119-214 108-197 (517)
158 PRK10877 protein disulfide iso 98.0 2.3E-05 4.9E-10 69.2 8.8 82 125-214 105-230 (232)
159 KOG3171 Conserved phosducin-li 98.0 1.3E-05 2.9E-10 68.3 6.8 107 108-215 139-251 (273)
160 cd02968 SCO SCO (an acronym fo 98.0 2.8E-05 6E-10 62.5 8.5 42 126-167 21-68 (142)
161 PRK15000 peroxidase; Provision 97.9 0.00011 2.3E-09 63.4 10.9 88 126-214 33-161 (200)
162 PF01216 Calsequestrin: Calseq 97.9 0.0001 2.3E-09 67.3 10.3 107 105-217 32-146 (383)
163 cd03020 DsbA_DsbC_DsbG DsbA fa 97.9 3.4E-05 7.4E-10 66.1 6.9 77 126-211 76-197 (197)
164 cd03419 GRX_GRXh_1_2_like Glut 97.9 4.8E-05 1E-09 55.3 6.5 55 131-190 2-61 (82)
165 cd02971 PRX_family Peroxiredox 97.9 0.00017 3.6E-09 57.7 10.1 42 126-167 21-65 (140)
166 cd03016 PRX_1cys Peroxiredoxin 97.8 0.00015 3.2E-09 62.6 10.2 85 129-214 28-153 (203)
167 PTZ00137 2-Cys peroxiredoxin; 97.8 0.00024 5.2E-09 63.6 11.7 88 126-214 97-224 (261)
168 cd02982 PDI_b'_family Protein 97.8 2.6E-06 5.6E-11 64.7 -1.2 62 20-85 36-99 (103)
169 PF11009 DUF2847: Protein of u 97.8 0.00036 7.8E-09 53.6 10.6 96 110-207 2-104 (105)
170 PRK13189 peroxiredoxin; Provis 97.8 0.00031 6.7E-09 61.6 11.2 88 126-214 34-162 (222)
171 PF00462 Glutaredoxin: Glutare 97.8 0.00013 2.9E-09 50.0 6.9 51 131-186 1-55 (60)
172 PRK11657 dsbG disulfide isomer 97.7 0.00029 6.4E-09 62.8 10.8 84 126-212 116-249 (251)
173 TIGR03140 AhpF alkyl hydropero 97.7 0.00033 7.2E-09 68.8 12.1 90 119-214 109-198 (515)
174 PF07912 ERp29_N: ERp29, N-ter 97.7 0.0014 3.1E-08 51.4 12.9 102 109-216 6-120 (126)
175 KOG3170 Conserved phosducin-li 97.7 0.002 4.4E-08 54.7 14.3 108 105-216 89-202 (240)
176 PRK13599 putative peroxiredoxi 97.7 0.0005 1.1E-08 60.0 11.1 87 127-214 28-155 (215)
177 PRK13191 putative peroxiredoxi 97.6 0.00062 1.3E-08 59.4 11.1 87 127-214 33-160 (215)
178 PTZ00253 tryparedoxin peroxida 97.6 0.00067 1.4E-08 58.3 11.1 88 126-214 35-163 (199)
179 cd02066 GRX_family Glutaredoxi 97.6 0.0002 4.4E-09 49.8 6.3 50 131-185 2-55 (72)
180 TIGR02194 GlrX_NrdH Glutaredox 97.6 0.00048 1E-08 49.1 7.8 66 132-209 2-70 (72)
181 PRK10329 glutaredoxin-like pro 97.6 0.00091 2E-08 49.1 9.3 71 131-214 3-76 (81)
182 PTZ00062 glutaredoxin; Provisi 97.6 0.00027 5.9E-09 61.0 7.5 125 20-186 41-174 (204)
183 PF13462 Thioredoxin_4: Thiore 97.5 0.0016 3.5E-08 53.2 11.4 82 125-213 10-162 (162)
184 TIGR02190 GlrX-dom Glutaredoxi 97.5 0.00042 9E-09 50.4 6.6 55 127-186 6-63 (79)
185 PF05768 DUF836: Glutaredoxin- 97.5 0.00042 9.1E-09 50.8 6.3 76 131-212 2-81 (81)
186 TIGR03143 AhpF_homolog putativ 97.5 0.0023 5E-08 63.5 13.5 115 118-236 357-472 (555)
187 PF13848 Thioredoxin_6: Thiore 97.4 3.7E-05 8E-10 64.3 -0.3 62 20-85 119-182 (184)
188 PHA03050 glutaredoxin; Provisi 97.3 0.00062 1.3E-08 52.8 6.2 55 131-185 15-74 (108)
189 TIGR02181 GRX_bact Glutaredoxi 97.3 0.00055 1.2E-08 49.5 5.5 49 131-184 1-53 (79)
190 cd03418 GRX_GRXb_1_3_like Glut 97.3 0.0013 2.8E-08 46.8 6.8 50 131-185 2-56 (75)
191 cd03027 GRX_DEP Glutaredoxin ( 97.3 0.0014 3E-08 46.7 6.9 50 131-185 3-56 (73)
192 cd02972 DsbA_family DsbA famil 97.2 0.0011 2.5E-08 48.6 6.7 58 131-188 1-91 (98)
193 KOG2603 Oligosaccharyltransfer 97.2 0.0044 9.4E-08 56.1 10.6 112 104-217 37-168 (331)
194 cd03023 DsbA_Com1_like DsbA fa 97.2 0.0011 2.4E-08 53.4 6.4 41 126-166 4-44 (154)
195 cd03072 PDI_b'_ERp44 PDIb' fam 97.2 0.0054 1.2E-07 47.7 9.8 97 115-215 6-108 (111)
196 TIGR02189 GlrX-like_plant Glut 97.1 0.0011 2.5E-08 50.5 5.8 53 131-190 10-69 (99)
197 PF07449 HyaE: Hydrogenase-1 e 97.0 0.004 8.6E-08 48.1 7.6 90 110-205 12-105 (107)
198 cd03029 GRX_hybridPRX5 Glutare 97.0 0.0033 7.1E-08 44.6 6.4 66 131-211 3-71 (72)
199 TIGR00365 monothiol glutaredox 96.9 0.0063 1.4E-07 46.2 8.0 54 127-185 11-72 (97)
200 cd03073 PDI_b'_ERp72_ERp57 PDI 96.7 0.018 3.9E-07 44.8 9.4 75 138-214 29-110 (111)
201 cd03066 PDI_b_Calsequestrin_mi 96.7 0.04 8.7E-07 41.9 11.0 97 109-214 2-100 (102)
202 cd03028 GRX_PICOT_like Glutare 96.6 0.0059 1.3E-07 45.5 6.1 53 127-184 7-67 (90)
203 COG0695 GrxC Glutaredoxin and 96.6 0.0072 1.6E-07 44.2 6.1 67 131-209 3-75 (80)
204 cd03069 PDI_b_ERp57 PDIb famil 96.5 0.048 1E-06 41.7 10.5 95 109-214 2-103 (104)
205 PRK10638 glutaredoxin 3; Provi 96.5 0.011 2.3E-07 43.3 6.4 50 131-185 4-57 (83)
206 cd03067 PDI_b_PDIR_N PDIb fami 96.3 0.051 1.1E-06 41.3 8.9 99 110-213 4-110 (112)
207 PRK10824 glutaredoxin-4; Provi 96.1 0.024 5.3E-07 44.4 6.9 55 127-186 14-76 (115)
208 PF01216 Calsequestrin: Calseq 95.8 0.19 4.1E-06 46.5 12.3 154 29-216 91-248 (383)
209 cd03019 DsbA_DsbA DsbA family, 95.6 0.023 4.9E-07 47.2 5.1 41 126-166 14-55 (178)
210 COG1331 Highly conserved prote 95.5 0.038 8.3E-07 55.1 7.0 79 114-195 32-122 (667)
211 PF13743 Thioredoxin_5: Thiore 95.4 0.081 1.7E-06 44.6 7.9 26 133-158 2-27 (176)
212 PRK12759 bifunctional gluaredo 95.4 0.038 8.3E-07 52.8 6.5 51 131-186 4-66 (410)
213 PF00837 T4_deiodinase: Iodoth 95.0 0.36 7.7E-06 42.5 10.8 57 106-164 81-140 (237)
214 cd03068 PDI_b_ERp72 PDIb famil 94.7 0.9 2E-05 34.9 11.2 97 109-214 2-107 (107)
215 KOG2640 Thioredoxin [Function 94.3 0.019 4.1E-07 52.1 1.1 94 120-216 69-163 (319)
216 cd02974 AhpF_NTD_N Alkyl hydro 94.2 1.3 2.8E-05 33.4 10.9 75 126-213 18-92 (94)
217 PRK10954 periplasmic protein d 94.1 0.071 1.5E-06 46.0 4.3 40 127-166 37-80 (207)
218 PF01323 DSBA: DSBA-like thior 93.9 0.87 1.9E-05 38.0 10.7 30 130-159 1-30 (193)
219 cd03001 PDI_a_P5 PDIa family, 93.8 0.016 3.4E-07 43.5 -0.3 59 20-85 42-102 (103)
220 cd03004 PDI_a_ERdj5_C PDIa fam 93.6 0.018 3.9E-07 43.5 -0.2 58 20-84 43-103 (104)
221 KOG1752 Glutaredoxin and relat 93.5 0.33 7.2E-06 37.3 6.6 53 131-186 16-73 (104)
222 cd03013 PRX5_like Peroxiredoxi 93.2 0.19 4.1E-06 41.3 5.3 52 127-178 29-88 (155)
223 KOG4277 Uncharacterized conser 93.1 0.65 1.4E-05 42.2 8.8 147 31-214 81-230 (468)
224 PRK15317 alkyl hydroperoxide r 93.1 1.4 3.1E-05 43.3 12.2 95 127-236 18-112 (517)
225 KOG0912 Thiol-disulfide isomer 92.6 0.33 7.2E-06 44.2 6.2 151 27-214 49-207 (375)
226 cd03003 PDI_a_ERdj5_N PDIa fam 92.5 0.037 8E-07 41.6 0.0 57 20-84 42-100 (101)
227 TIGR03140 AhpF alkyl hydropero 91.7 3 6.6E-05 41.0 12.5 96 127-236 18-113 (515)
228 cd03040 GST_N_mPGES2 GST_N fam 91.2 1.3 2.7E-05 31.3 7.0 75 131-215 2-76 (77)
229 cd02954 DIM1 Dim1 family; Dim1 90.9 0.19 4.2E-06 39.3 2.5 58 20-85 38-97 (114)
230 cd03065 PDI_b_Calsequestrin_N 90.8 0.053 1.2E-06 42.8 -0.7 57 20-85 55-115 (120)
231 COG1225 Bcp Peroxiredoxin [Pos 90.8 0.7 1.5E-05 38.2 5.9 42 126-167 29-73 (157)
232 cd02978 KaiB_like KaiB-like fa 90.0 1.4 3.1E-05 31.5 6.1 58 130-187 3-62 (72)
233 cd03031 GRX_GRX_like Glutaredo 90.0 1.2 2.6E-05 36.4 6.6 51 131-186 2-66 (147)
234 cd03006 PDI_a_EFP1_N PDIa fami 89.9 0.11 2.4E-06 40.5 0.4 56 20-84 53-112 (113)
235 cd03060 GST_N_Omega_like GST_N 89.7 1.3 2.8E-05 30.8 5.9 52 132-186 2-54 (71)
236 KOG0910 Thioredoxin-like prote 88.8 0.25 5.4E-06 40.4 1.7 37 20-60 85-123 (150)
237 PHA03075 glutaredoxin-like pro 88.5 0.8 1.7E-05 35.7 4.2 30 128-157 2-31 (123)
238 PF00085 Thioredoxin: Thioredo 88.3 0.073 1.6E-06 39.5 -1.6 57 20-85 41-100 (103)
239 COG3634 AhpF Alkyl hydroperoxi 87.7 3.3 7.1E-05 38.9 8.3 92 116-213 105-196 (520)
240 cd02965 HyaE HyaE family; HyaE 87.1 0.31 6.7E-06 38.0 1.2 37 20-60 53-91 (111)
241 cd02956 ybbN ybbN protein fami 87.0 0.18 3.9E-06 37.3 -0.1 37 20-60 36-74 (96)
242 cd03005 PDI_a_ERp46 PDIa famil 86.5 0.2 4.3E-06 37.3 -0.1 57 20-84 40-101 (102)
243 cd03002 PDI_a_MPD1_like PDI fa 86.0 0.2 4.3E-06 37.9 -0.4 59 20-85 42-108 (109)
244 PRK09381 trxA thioredoxin; Pro 85.7 0.26 5.6E-06 37.4 0.1 58 20-85 45-104 (109)
245 TIGR02654 circ_KaiB circadian 85.2 3.3 7.2E-05 30.7 5.8 60 128-187 3-64 (87)
246 cd02977 ArsC_family Arsenate R 85.2 1.1 2.3E-05 34.1 3.4 77 132-214 2-86 (105)
247 cd02993 PDI_a_APS_reductase PD 85.0 0.32 7E-06 37.1 0.4 59 20-85 45-109 (109)
248 PRK09301 circadian clock prote 85.0 3.3 7.1E-05 31.7 5.8 62 126-187 4-67 (103)
249 cd03074 PDI_b'_Calsequestrin_C 84.5 17 0.00036 28.2 11.3 100 115-214 8-119 (120)
250 cd02996 PDI_a_ERp44 PDIa famil 84.5 0.48 1E-05 35.9 1.1 49 27-84 55-107 (108)
251 cd02999 PDI_a_ERp44_like PDIa 84.5 0.23 5.1E-06 37.5 -0.6 55 20-84 42-99 (100)
252 cd00570 GST_N_family Glutathio 84.4 1.4 3E-05 29.4 3.4 51 133-186 3-55 (71)
253 cd02995 PDI_a_PDI_a'_C PDIa fa 84.4 0.43 9.3E-06 35.4 0.9 58 20-84 42-103 (104)
254 TIGR01126 pdi_dom protein disu 84.3 0.24 5.1E-06 36.7 -0.6 58 20-85 37-98 (102)
255 cd02961 PDI_a_family Protein D 83.7 0.4 8.6E-06 34.9 0.4 39 20-62 39-81 (101)
256 PTZ00443 Thioredoxin domain-co 83.2 0.32 6.9E-06 42.7 -0.4 58 20-85 76-135 (224)
257 cd03051 GST_N_GTT2_like GST_N 83.1 3.1 6.8E-05 28.5 4.9 52 132-186 2-57 (74)
258 cd02998 PDI_a_ERp38 PDIa famil 83.0 0.48 1E-05 35.2 0.6 58 20-84 42-104 (105)
259 cd03041 GST_N_2GST_N GST_N fam 82.8 8.9 0.00019 27.0 7.2 70 132-214 3-76 (77)
260 COG3019 Predicted metal-bindin 82.1 15 0.00032 29.8 8.7 74 129-214 26-103 (149)
261 TIGR01617 arsC_related transcr 81.8 2.8 6.1E-05 32.5 4.6 34 132-170 2-35 (117)
262 cd02986 DLP Dim1 family, Dim1- 81.5 1 2.2E-05 35.2 2.0 45 20-68 38-84 (114)
263 COG1651 DsbG Protein-disulfide 81.1 2.5 5.3E-05 37.0 4.5 39 169-214 204-242 (244)
264 PRK10996 thioredoxin 2; Provis 80.5 0.46 9.9E-06 38.2 -0.3 58 20-85 76-135 (139)
265 cd03037 GST_N_GRX2 GST_N famil 80.4 3.9 8.5E-05 28.2 4.5 50 133-185 3-52 (71)
266 cd03045 GST_N_Delta_Epsilon GS 80.3 5.2 0.00011 27.6 5.2 51 132-185 2-56 (74)
267 PF13417 GST_N_3: Glutathione 80.1 13 0.00028 26.0 7.3 70 134-216 2-72 (75)
268 TIGR02742 TrbC_Ftype type-F co 79.8 8.7 0.00019 30.7 6.8 48 167-215 58-115 (130)
269 cd02963 TRX_DnaJ TRX domain, D 79.8 0.38 8.2E-06 37.0 -1.0 58 20-85 48-108 (111)
270 PF06053 DUF929: Domain of unk 79.7 7.9 0.00017 34.5 7.1 59 125-189 56-114 (249)
271 PRK11509 hydrogenase-1 operon 79.6 0.79 1.7E-05 36.8 0.8 37 20-60 60-99 (132)
272 TIGR01068 thioredoxin thioredo 79.5 0.53 1.2E-05 34.5 -0.2 37 20-60 38-76 (101)
273 cd03036 ArsC_like Arsenate Red 79.4 2.9 6.3E-05 32.2 3.9 77 132-214 2-87 (111)
274 cd03035 ArsC_Yffb Arsenate Red 79.0 2.7 5.8E-05 32.2 3.5 32 132-168 2-33 (105)
275 PF09673 TrbC_Ftype: Type-F co 78.5 20 0.00043 27.8 8.4 42 144-189 36-80 (113)
276 PRK01655 spxA transcriptional 78.1 3.9 8.4E-05 32.6 4.3 35 131-170 2-36 (131)
277 cd02949 TRX_NTR TRX domain, no 77.9 0.58 1.3E-05 34.8 -0.5 42 20-66 37-80 (97)
278 KOG2792 Putative cytochrome C 77.1 13 0.00027 33.3 7.5 90 126-215 138-275 (280)
279 cd03059 GST_N_SspA GST_N famil 74.5 6.1 0.00013 27.2 4.1 51 132-185 2-53 (73)
280 COG2761 FrnE Predicted dithiol 74.1 8.1 0.00017 33.9 5.5 43 171-219 175-217 (225)
281 cd02994 PDI_a_TMX PDIa family, 73.8 1.2 2.6E-05 33.1 0.3 57 20-85 40-99 (101)
282 COG1651 DsbG Protein-disulfide 71.6 7 0.00015 34.1 4.8 38 126-163 83-120 (244)
283 cd03032 ArsC_Spx Arsenate Redu 70.0 9.6 0.00021 29.4 4.7 34 131-169 2-35 (115)
284 PRK12559 transcriptional regul 69.9 7.6 0.00016 31.0 4.2 33 131-168 2-34 (131)
285 KOG2507 Ubiquitin regulatory p 69.7 35 0.00075 32.7 8.9 89 125-214 16-110 (506)
286 cd03007 PDI_a_ERp29_N PDIa fam 69.7 0.99 2.1E-05 35.4 -1.0 51 28-85 51-112 (116)
287 cd02953 DsbDgamma DsbD gamma f 69.2 0.94 2E-05 34.0 -1.2 38 20-61 38-81 (104)
288 cd03023 DsbA_Com1_like DsbA fa 69.2 5.6 0.00012 31.4 3.3 36 169-211 118-153 (154)
289 cd03055 GST_N_Omega GST_N fami 69.1 18 0.00039 26.3 5.8 53 131-186 19-72 (89)
290 COG3531 Predicted protein-disu 68.9 8.2 0.00018 33.1 4.2 46 170-215 164-209 (212)
291 cd03000 PDI_a_TMX3 PDIa family 68.5 1.2 2.6E-05 33.5 -0.8 57 20-85 39-100 (104)
292 PF07689 KaiB: KaiB domain; I 68.1 2.2 4.8E-05 31.3 0.7 52 134-185 3-56 (82)
293 cd02989 Phd_like_TxnDC9 Phosdu 66.7 2.9 6.3E-05 32.3 1.1 36 20-60 46-83 (113)
294 cd02950 TxlA TRX-like protein 66.7 2 4.3E-05 34.7 0.2 43 20-66 44-90 (142)
295 COG4545 Glutaredoxin-related p 66.4 13 0.00028 26.9 4.2 54 132-191 5-74 (85)
296 cd02997 PDI_a_PDIR PDIa family 66.2 2.1 4.5E-05 31.7 0.2 37 20-60 41-83 (104)
297 KOG0907 Thioredoxin [Posttrans 63.0 3.9 8.4E-05 31.4 1.2 36 20-60 45-82 (106)
298 TIGR00424 APS_reduc 5'-adenyly 63.0 2.3 4.9E-05 41.4 -0.2 58 20-85 395-459 (463)
299 cd02984 TRX_PICOT TRX domain, 60.5 5.2 0.00011 29.2 1.4 37 20-60 38-76 (97)
300 COG3118 Thioredoxin domain-con 60.4 3.6 7.8E-05 37.5 0.6 36 20-59 67-104 (304)
301 cd03071 PDI_b'_NRX PDIb' famil 60.3 2.4 5.3E-05 32.6 -0.4 53 28-85 57-111 (116)
302 PLN00410 U5 snRNP protein, DIM 59.9 5.1 0.00011 32.5 1.4 34 20-57 47-82 (142)
303 PF02630 SCO1-SenC: SCO1/SenC; 59.9 48 0.001 27.5 7.4 42 126-167 51-97 (174)
304 cd03056 GST_N_4 GST_N family, 59.7 32 0.0007 23.2 5.4 51 133-186 3-57 (73)
305 PF04134 DUF393: Protein of un 58.9 16 0.00035 27.8 4.0 56 134-190 2-60 (114)
306 cd03025 DsbA_FrnE_like DsbA fa 58.3 13 0.00028 30.9 3.7 27 131-157 3-29 (193)
307 PF04592 SelP_N: Selenoprotein 58.0 25 0.00055 31.0 5.4 46 122-167 21-71 (238)
308 cd03024 DsbA_FrnE DsbA family, 56.0 15 0.00032 30.8 3.6 38 168-211 163-200 (201)
309 PRK13344 spxA transcriptional 55.6 20 0.00044 28.5 4.2 33 131-168 2-34 (132)
310 PRK10954 periplasmic protein d 53.7 18 0.00039 30.9 3.9 20 170-191 157-176 (207)
311 cd02957 Phd_like Phosducin (Ph 53.6 7.4 0.00016 29.7 1.3 36 20-60 48-84 (113)
312 PLN02309 5'-adenylylsulfate re 52.3 4.3 9.3E-05 39.5 -0.3 58 20-85 389-453 (457)
313 PF09822 ABC_transp_aux: ABC-t 51.4 1.7E+02 0.0038 25.8 12.3 91 126-216 23-143 (271)
314 cd03022 DsbA_HCCA_Iso DsbA fam 50.3 19 0.00041 29.8 3.4 36 169-211 156-191 (192)
315 TIGR00411 redox_disulf_1 small 48.5 6.5 0.00014 27.6 0.3 35 20-58 23-59 (82)
316 cd02967 mauD Methylamine utili 47.7 28 0.00061 26.0 3.7 7 116-122 65-71 (114)
317 PF06491 Disulph_isomer: Disul 47.4 43 0.00093 26.8 4.7 103 106-213 15-130 (136)
318 KOG1731 FAD-dependent sulfhydr 47.4 87 0.0019 31.3 7.7 170 23-214 87-268 (606)
319 cd02948 TRX_NDPK TRX domain, T 47.3 10 0.00023 28.3 1.2 37 20-60 41-79 (102)
320 cd02985 TRX_CDSP32 TRX family, 46.3 9.6 0.00021 28.5 0.9 36 20-60 39-79 (103)
321 PRK13730 conjugal transfer pil 46.0 54 0.0012 28.4 5.4 44 168-214 150-193 (212)
322 PF06953 ArsD: Arsenical resis 45.1 1.5E+02 0.0031 23.5 7.4 64 144-214 28-101 (123)
323 PHA02278 thioredoxin-like prot 44.4 8.1 0.00017 29.4 0.2 37 20-60 38-80 (103)
324 cd03052 GST_N_GDAP1 GST_N fami 43.9 73 0.0016 22.1 5.2 51 132-185 2-56 (73)
325 cd02962 TMX2 TMX2 family; comp 42.1 13 0.00028 30.5 1.1 41 20-60 71-116 (152)
326 cd02987 Phd_like_Phd Phosducin 41.1 18 0.00038 30.3 1.8 36 20-60 107-143 (175)
327 PF08806 Sep15_SelM: Sep15/Sel 40.8 39 0.00085 24.4 3.3 36 180-215 41-76 (78)
328 COG1999 Uncharacterized protei 40.6 1.5E+02 0.0032 25.5 7.5 53 126-178 66-127 (207)
329 cd03019 DsbA_DsbA DsbA family, 39.0 32 0.00068 28.0 3.0 18 169-186 132-149 (178)
330 KOG1422 Intracellular Cl- chan 38.5 2E+02 0.0043 25.1 7.7 68 138-217 20-87 (221)
331 cd03021 DsbA_GSTK DsbA family, 38.0 43 0.00092 28.5 3.8 39 171-211 170-208 (209)
332 cd02975 PfPDO_like_N Pyrococcu 37.1 16 0.00034 28.0 0.8 36 20-60 46-83 (113)
333 cd03033 ArsC_15kD Arsenate Red 36.6 46 0.00099 25.7 3.4 32 131-167 2-33 (113)
334 cd02990 UAS_FAF1 UAS family, F 35.8 2.3E+02 0.005 22.7 11.9 88 125-214 19-132 (136)
335 cd03025 DsbA_FrnE_like DsbA fa 35.2 26 0.00057 29.0 2.0 22 169-190 158-179 (193)
336 cd03053 GST_N_Phi GST_N family 35.1 1.4E+02 0.003 20.3 5.5 52 131-185 2-57 (76)
337 PF00403 HMA: Heavy-metal-asso 32.6 1E+02 0.0022 20.3 4.3 32 135-169 5-36 (62)
338 cd02952 TRP14_like Human TRX-r 32.1 33 0.00071 26.9 1.9 38 20-60 52-98 (119)
339 COG0278 Glutaredoxin-related p 31.3 1.9E+02 0.004 22.2 5.7 52 136-191 27-80 (105)
340 COG3411 Ferredoxin [Energy pro 30.0 1.1E+02 0.0023 21.4 3.9 31 181-217 17-47 (64)
341 cd03010 TlpA_like_DsbE TlpA-li 29.3 51 0.0011 25.2 2.6 36 29-68 81-116 (127)
342 cd02988 Phd_like_VIAF Phosduci 29.1 26 0.00056 29.8 0.9 36 20-61 126-161 (192)
343 PF11287 DUF3088: Protein of u 28.7 80 0.0017 24.5 3.4 75 139-214 24-106 (112)
344 KOG2868 Decapping enzyme compl 25.4 1.8E+02 0.004 26.9 5.7 67 143-213 21-88 (335)
345 TIGR00014 arsC arsenate reduct 25.2 94 0.002 23.8 3.4 32 132-168 2-33 (114)
346 KOG1672 ATP binding protein [P 23.8 62 0.0013 27.8 2.2 43 20-67 108-152 (211)
347 PF00255 GSHPx: Glutathione pe 22.8 2.5E+02 0.0053 21.6 5.3 42 126-168 20-63 (108)
348 COG1393 ArsC Arsenate reductas 22.3 1.1E+02 0.0024 23.9 3.2 22 131-152 3-24 (117)
349 cd03058 GST_N_Tau GST_N family 22.1 2.5E+02 0.0055 18.9 4.9 68 133-213 3-72 (74)
350 cd03049 GST_N_3 GST_N family, 20.5 1.6E+02 0.0034 19.9 3.5 53 133-186 3-56 (73)
351 COG5429 Uncharacterized secret 20.3 4.9E+02 0.011 23.2 7.0 84 128-217 42-143 (261)
352 cd03034 ArsC_ArsC Arsenate Red 20.2 1.1E+02 0.0023 23.4 2.8 31 132-167 2-32 (112)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.1e-29 Score=235.66 Aligned_cols=187 Identities=17% Similarity=0.232 Sum_probs=144.3
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCceeeeeehhhhhhhHH
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFSINAQASICVSRA 97 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~ 97 (287)
.+|++|||+++|+.+|.. ++++++|||.. ...|..++...+.+.||.++ ..+.+.++|..|+.+-..+ ++.+.
T Consensus 279 ~vAk~f~~~l~Fi~~d~e~~~~~~~~~Gl~~--~~~~~~~v~~~~~~~Ky~~~--~e~~~~~~ie~f~~~~l~G-k~~p~ 353 (493)
T KOG0190|consen 279 EVAKKFKGKLRFILIDPESFARVLEFFGLEE--EQLPIRAVILNEDGSKYPLE--EEELDQENIESFVKDFLDG-KVKPH 353 (493)
T ss_pred HHHHhcccceEEEEEChHHhhHHHHhcCccc--ccCCeeEEeeccccccccCc--cccccHHHHHHHHHHHhcC-ccccc
Confidence 899999999999999888 77999999997 55663334444678899987 3557777899888322222 11100
Q ss_pred H---HHHhhhCCCCeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC---CeEEEEEEccCcHH
Q 023089 98 M---RWWEKTLKPNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP---NAIFLKVNYEELKT 171 (287)
Q Consensus 98 ~---~~~~~~~~~~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~---~v~~~~vd~~~~~~ 171 (287)
. ...+.....+|+.+. .++|++++ .+.+|.|||+|||||||||+++.|+|++||+.|. ++.|++||++.|+-
T Consensus 354 ~kSqpiPe~~~~~pVkvvV-gknfd~iv-~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~ 431 (493)
T KOG0190|consen 354 LKSQPIPEDNDRSPVKVVV-GKNFDDIV-LDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV 431 (493)
T ss_pred cccCCCCcccccCCeEEEe-ecCHHHHh-hccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC
Confidence 0 111122224566674 57787665 5689999999999999999999999999999975 49999999999963
Q ss_pred HHHhCCCCcccEEEEEECCC-ceEEEEecCCCCHHHHHHHHHHhcC
Q 023089 172 MCHSLHIHVLPFFKFYRGSE-GHLCSFSCTNATIKKFKDALAKHGT 216 (287)
Q Consensus 172 l~~~~~V~~~PTi~~f~~g~-g~~~~~~~g~~~~~~l~~~i~~~~~ 216 (287)
....+.++|||++|+.|. .+++.|. |.|++++|..||++++.
T Consensus 432 --~~~~~~~fPTI~~~pag~k~~pv~y~-g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 432 --PSLKVDGFPTILFFPAGHKSNPVIYN-GDRTLEDLKKFIKKSAT 474 (493)
T ss_pred --ccccccccceEEEecCCCCCCCcccC-CCcchHHHHhhhccCCC
Confidence 456788899999999886 4588898 99999999999999876
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=99.91 E-value=4.9e-24 Score=205.71 Aligned_cols=188 Identities=19% Similarity=0.237 Sum_probs=141.4
Q ss_pred cccCCCCCeeeeeeecCC--Cc-cccccccccccccCCceeeeccCCeeeecCCCcc-ccccccCCceeeeeehhhhhhh
Q 023089 20 FPSSKDKSIVGFCSSRAP--PS-QVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSL-TLWHVKAPNKFSINAQASICVS 95 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~-~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~-~~~~~~~i~~f~~~~~~~~~~~ 95 (287)
.+|++||++++|+++|++ +. ..+.||+. .+|++++.+.. .+|.++... ...+.++|.+|+.+-..+. +.
T Consensus 271 ~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi~----~~P~~~i~~~~--~~y~~~~~~~~~~~~~~l~~Fv~~~~~gk-~~ 343 (477)
T PTZ00102 271 KVARKLREKYAFVWLDTEQFGSHAKEHLLIE----EFPGLAYQSPA--GRYLLPPAKESFDSVEALIEFFKDVEAGK-VE 343 (477)
T ss_pred HHHHhccCceEEEEEechhcchhHHHhcCcc----cCceEEEEcCC--cccCCCccccccCCHHHHHHHHHHHhCCC-CC
Confidence 799999999999999999 43 67799996 49999987632 366554211 1256888888873322220 01
Q ss_pred HHHH--HHhhhCCCCeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC---CeEEEEEEccCcH
Q 023089 96 RAMR--WWEKTLKPNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP---NAIFLKVNYEELK 170 (287)
Q Consensus 96 ~~~~--~~~~~~~~~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~---~v~~~~vd~~~~~ 170 (287)
.... -.......++..+ +.++|.+.+. ++++++||+||||||++|+.+.|.|+++++.+. .+.++++|++.++
T Consensus 344 ~~~~se~~p~~~~~~v~~l-~~~~f~~~v~-~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~ 421 (477)
T PTZ00102 344 KSIKSEPIPEEQDGPVKVV-VGNTFEEIVF-KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANE 421 (477)
T ss_pred cccccCCCCCCCCCCeEEe-cccchHHHHh-cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCc
Confidence 0000 0001112345666 4578887754 478999999999999999999999999998875 3899999999999
Q ss_pred HHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHHHHhcCC
Q 023089 171 TMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKHGTD 217 (287)
Q Consensus 171 ~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~~~ 217 (287)
..+++|+|+++||+++|++|+..+..|. |.++.+.|.+||+++...
T Consensus 422 ~~~~~~~v~~~Pt~~~~~~~~~~~~~~~-G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 422 TPLEEFSWSAFPTILFVKAGERTPIPYE-GERTVEGFKEFVNKHATN 467 (477)
T ss_pred cchhcCCCcccCeEEEEECCCcceeEec-CcCCHHHHHHHHHHcCCC
Confidence 9999999999999999998754456777 899999999999999765
No 3
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.89 E-value=1.7e-22 Score=158.45 Aligned_cols=103 Identities=13% Similarity=0.219 Sum_probs=89.3
Q ss_pred CCCeEEeCCHhHHHHHH-HcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHH-HhCCCCccc
Q 023089 106 KPNMIEIQSAQELVDAL-RNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMC-HSLHIHVLP 182 (287)
Q Consensus 106 ~~~v~~i~s~~~f~~~i-~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~-~~~~V~~~P 182 (287)
.+.|.++ +.++|.+.+ ..++++++||+||||||+||+.+.|.|+++++.+.+ +.|++|||++++.+| ++|+|.++|
T Consensus 8 ~~~v~~l-~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~P 86 (113)
T cd03006 8 RSPVLDF-YKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFP 86 (113)
T ss_pred CCCeEEe-chhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccC
Confidence 3567888 457787763 235889999999999999999999999999999876 899999999999999 589999999
Q ss_pred EEEEEECCCceEEEEecCCCCHHHHHHHH
Q 023089 183 FFKFYRGSEGHLCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 183 Ti~~f~~g~g~~~~~~~g~~~~~~l~~~i 211 (287)
|+++|++|+ .+..|. |.++.+.|..|+
T Consensus 87 Tl~lf~~g~-~~~~y~-G~~~~~~i~~~~ 113 (113)
T cd03006 87 VIHLYYRSR-GPIEYK-GPMRAPYMEKFV 113 (113)
T ss_pred EEEEEECCc-cceEEe-CCCCHHHHHhhC
Confidence 999999876 577888 999999998763
No 4
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1e-22 Score=164.07 Aligned_cols=104 Identities=23% Similarity=0.391 Sum_probs=92.6
Q ss_pred eEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHHHhCCCCcccEEEEE
Q 023089 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMCHSLHIHVLPFFKFY 187 (287)
Q Consensus 109 v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~~~~~V~~~PTi~~f 187 (287)
...+.+..+|++.+.+ ++.||+|+|||+||+||+.+.|.+++++.+|.| +++++||.|++++++.+|+|..+||+++|
T Consensus 44 ~~~~~s~~~~~~~Vi~-S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVIN-SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred cccccCHHHHHHHHHc-cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 3445578899888775 899999999999999999999999999999877 99999999999999999999999999999
Q ss_pred ECCCceEEEEecCCCCHHHHHHHHHHhc
Q 023089 188 RGSEGHLCSFSCTNATIKKFKDALAKHG 215 (287)
Q Consensus 188 ~~g~g~~~~~~~g~~~~~~l~~~i~~~~ 215 (287)
++|+ +...+. |..+.+.|.++|++..
T Consensus 123 knGe-~~d~~v-G~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 123 KNGE-KVDRFV-GAVPKEQLRSLIKKFL 148 (150)
T ss_pred ECCE-Eeeeec-ccCCHHHHHHHHHHHh
Confidence 9965 344554 9999999999999874
No 5
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.88 E-value=5.4e-22 Score=152.90 Aligned_cols=101 Identities=19% Similarity=0.462 Sum_probs=88.0
Q ss_pred CeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHHHhCCCCcccEEEE
Q 023089 108 NMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMCHSLHIHVLPFFKF 186 (287)
Q Consensus 108 ~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~~~~~V~~~PTi~~ 186 (287)
+++++ +.++|.+.+.. ++++++|+|||+||++|+++.|.|+++++++.+ +.|++||++++++++++|+|+++||+++
T Consensus 2 ~v~~l-~~~~f~~~i~~-~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITL-TPEDFPELVLN-RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEc-CHHHHHHHHhc-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 45667 56889887654 677999999999999999999999999999864 8999999999999999999999999999
Q ss_pred EECCCceEEEEecCCCC-HHHHHHHH
Q 023089 187 YRGSEGHLCSFSCTNAT-IKKFKDAL 211 (287)
Q Consensus 187 f~~g~g~~~~~~~g~~~-~~~l~~~i 211 (287)
|++|...+..|. |.++ .++|.+||
T Consensus 80 ~~~g~~~~~~~~-G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGNASKYHSYN-GWHRDADSILEFI 104 (104)
T ss_pred EcCCCCCceEcc-CCCCCHHHHHhhC
Confidence 998744677777 7776 99998875
No 6
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.88 E-value=1.7e-22 Score=193.56 Aligned_cols=179 Identities=18% Similarity=0.301 Sum_probs=144.6
Q ss_pred cccCCCCC-eeeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCceeeeeehhhhhhhH
Q 023089 20 FPSSKDKS-IVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFSINAQASICVSR 96 (287)
Q Consensus 20 ~~a~~~k~-~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~~~~~~~~~~~~ 96 (287)
.+|++|+| .+.|+++|.. .++++.||+.. ...|.+++.+..+..+|.+.+ ++++.++|.+|+.
T Consensus 259 ~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~--~~~P~~vi~~~~~~~~y~~~~--~~~~~~~i~~fi~---------- 324 (462)
T TIGR01130 259 EAAKKFRGKFVNFAVADEEDFGRELEYFGLKA--EKFPAVAIQDLEGNKKYPMDQ--EEFSSENLEAFVK---------- 324 (462)
T ss_pred HHHHHCCCCeEEEEEecHHHhHHHHHHcCCCc--cCCceEEEEeCCcccccCCCc--CCCCHHHHHHHHH----------
Confidence 68999997 9999999998 66888999986 679999988755556888763 2678889999983
Q ss_pred HHHHHhhhCC-------------CCeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC----Ce
Q 023089 97 AMRWWEKTLK-------------PNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP----NA 159 (287)
Q Consensus 97 ~~~~~~~~~~-------------~~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~----~v 159 (287)
+++.++.+ ..+..+ +.++|.+.+. +.++++||+||||||++|+.+.|.++++++.+. ++
T Consensus 325 --~~~~g~~~~~~~se~~p~~~~~~v~~l-~~~~f~~~v~-~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i 400 (462)
T TIGR01130 325 --DFLDGKLKPYLKSEPIPEDDEGPVKVL-VGKNFDEIVL-DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDV 400 (462)
T ss_pred --HHhcCCCCeeeccCCCCccCCCccEEe-eCcCHHHHhc-cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcE
Confidence 33433332 245555 4577877764 478999999999999999999999999999975 48
Q ss_pred EEEEEEccCcHHHHHhCCCCcccEEEEEECCCc-eEEEEecCCCCHHHHHHHHHHhcCCCC
Q 023089 160 IFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEG-HLCSFSCTNATIKKFKDALAKHGTDRC 219 (287)
Q Consensus 160 ~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g-~~~~~~~g~~~~~~l~~~i~~~~~~~~ 219 (287)
.|+++|++.+. +.. ++|.++||+++|++|+. .+..+. |.++.+.|.+||+++++.+.
T Consensus 401 ~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 401 VIAKMDATAND-VPP-FEVEGFPTIKFVPAGKKSEPVPYD-GDRTLEDFSKFIAKHATFPL 458 (462)
T ss_pred EEEEEECCCCc-cCC-CCccccCEEEEEeCCCCcCceEec-CcCCHHHHHHHHHhcCCCCC
Confidence 99999999885 334 99999999999998763 457787 89999999999999976543
No 7
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.88 E-value=5.9e-22 Score=152.06 Aligned_cols=98 Identities=15% Similarity=0.340 Sum_probs=86.8
Q ss_pred CeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHHHhCCCCcccEEEE
Q 023089 108 NMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMCHSLHIHVLPFFKF 186 (287)
Q Consensus 108 ~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~~~~~V~~~PTi~~ 186 (287)
.++++ +.++|.+.+ ..+++++|+||||||++|+++.|.|+++++++++ +.|++|||++++.++++|+|+++||+++
T Consensus 2 ~~~~l-~~~~f~~~v--~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTL-DRGDFDAAV--NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEc-CHhhHHHHh--cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 46677 568898877 4569999999999999999999999999999875 8999999999999999999999999999
Q ss_pred EECCCceEEEEecCCCCHHHHHHH
Q 023089 187 YRGSEGHLCSFSCTNATIKKFKDA 210 (287)
Q Consensus 187 f~~g~g~~~~~~~g~~~~~~l~~~ 210 (287)
|++|+ .+..|. |.++.+.|.+|
T Consensus 79 ~~~g~-~~~~~~-G~~~~~~l~~f 100 (101)
T cd03003 79 FPSGM-NPEKYY-GDRSKESLVKF 100 (101)
T ss_pred EcCCC-CcccCC-CCCCHHHHHhh
Confidence 99875 456676 89999998876
No 8
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.88 E-value=1.7e-21 Score=148.86 Aligned_cols=101 Identities=23% Similarity=0.513 Sum_probs=90.7
Q ss_pred EEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC-CeEEEEEEccCcHHHHHhCCCCcccEEEEEE
Q 023089 110 IEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP-NAIFLKVNYEELKTMCHSLHIHVLPFFKFYR 188 (287)
Q Consensus 110 ~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~-~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~ 188 (287)
+.+ +.++|.+.+.. ++++++|+||++||++|+.+.|.|+++++.++ ++.|+.||+++++.++++|+|.++||+++|+
T Consensus 2 ~~l-t~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 2 IVL-TDENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp EEE-STTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred EEC-CHHHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEE
Confidence 445 56889888743 58999999999999999999999999999998 7999999999999999999999999999999
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHHh
Q 023089 189 GSEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 189 ~g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
+|+ ....+. |.++.+.|.+||++|
T Consensus 80 ~g~-~~~~~~-g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 80 NGK-EVKRYN-GPRNAESLIEFIEKH 103 (103)
T ss_dssp TTE-EEEEEE-SSSSHHHHHHHHHHH
T ss_pred CCc-EEEEEE-CCCCHHHHHHHHHcC
Confidence 975 455676 889999999999986
No 9
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.87 E-value=8.2e-22 Score=151.51 Aligned_cols=93 Identities=12% Similarity=0.213 Sum_probs=84.1
Q ss_pred hHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEcc-CcHHHHHhCCCCcccEEEEEECCCceE
Q 023089 116 QELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYE-ELKTMCHSLHIHVLPFFKFYRGSEGHL 194 (287)
Q Consensus 116 ~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~-~~~~l~~~~~V~~~PTi~~f~~g~g~~ 194 (287)
+.+.+.+...++++++|+||||||++|+.+.|.|+++++.++++.+++||++ +++.++++|+|.++||+++|++| .+
T Consensus 7 ~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~~ 84 (100)
T cd02999 7 NIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--PR 84 (100)
T ss_pred hHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--ce
Confidence 4556666667899999999999999999999999999999999999999999 89999999999999999999875 56
Q ss_pred EEEecCCCCHHHHHHHH
Q 023089 195 CSFSCTNATIKKFKDAL 211 (287)
Q Consensus 195 ~~~~~g~~~~~~l~~~i 211 (287)
..+. |.++.+.|.+||
T Consensus 85 ~~~~-G~~~~~~l~~f~ 100 (100)
T cd02999 85 VRYN-GTRTLDSLAAFY 100 (100)
T ss_pred eEec-CCCCHHHHHhhC
Confidence 7787 889999999885
No 10
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.87 E-value=1.9e-21 Score=151.89 Aligned_cols=98 Identities=14% Similarity=0.199 Sum_probs=81.9
Q ss_pred HhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHHHhCCCCcccEEEEEECCCce
Q 023089 115 AQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGH 193 (287)
Q Consensus 115 ~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~ 193 (287)
.++|.+.+..+.+++++|+|||+||+||+.|.|.++++++++++ +.|++||++++++++++|+|.++||+++|++|+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~-- 79 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK-- 79 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE--
Confidence 57788888655789999999999999999999999999999987 789999999999999999999999999999965
Q ss_pred EEEEecC----------CCCHHHHHHHHHHh
Q 023089 194 LCSFSCT----------NATIKKFKDALAKH 214 (287)
Q Consensus 194 ~~~~~~g----------~~~~~~l~~~i~~~ 214 (287)
.+....| ..+.+.|++.++..
T Consensus 80 ~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 80 HMKIDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred EEEEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 3333223 23566666666554
No 11
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.86 E-value=7.2e-21 Score=146.93 Aligned_cols=98 Identities=26% Similarity=0.412 Sum_probs=84.1
Q ss_pred CHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcH---HHHHhCCCCcccEEEEEECC
Q 023089 114 SAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK---TMCHSLHIHVLPFFKFYRGS 190 (287)
Q Consensus 114 s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~---~l~~~~~V~~~PTi~~f~~g 190 (287)
+.++|.+.+....++++||+|||+||++|+.+.|.+++++++++++.|++||+++++ +++++|+|.++||++||++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G 81 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG 81 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC
Confidence 578898888765689999999999999999999999999999988999999999874 79999999999999999986
Q ss_pred CceEEEEecCCCCHHHHHHHHHHh
Q 023089 191 EGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 191 ~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
+ .+..+. | ...++|.+.+..+
T Consensus 82 ~-~v~~~~-G-~~~~~l~~~~~~~ 102 (103)
T cd02985 82 E-KIHEEE-G-IGPDELIGDVLYY 102 (103)
T ss_pred e-EEEEEe-C-CCHHHHHHHHHhc
Confidence 4 344444 4 6678888877654
No 12
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.6e-21 Score=147.93 Aligned_cols=92 Identities=36% Similarity=0.737 Sum_probs=79.1
Q ss_pred HHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceEEEEec
Q 023089 120 DALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLCSFSC 199 (287)
Q Consensus 120 ~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~ 199 (287)
......++++++|+|||+|||||+.+.|.+++|+.+|+++.|++||++++.+++++++|.+.||++||++|+ +...+.
T Consensus 14 ~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~-~~~~~v- 91 (106)
T KOG0907|consen 14 LSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGE-EVDEVV- 91 (106)
T ss_pred HHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCE-EEEEEe-
Confidence 333445679999999999999999999999999999999999999999999999999999999999999975 455554
Q ss_pred CCCCHHHHHHHHHHh
Q 023089 200 TNATIKKFKDALAKH 214 (287)
Q Consensus 200 g~~~~~~l~~~i~~~ 214 (287)
+.+.+++.+.|.++
T Consensus 92 -Ga~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 92 -GANKAELEKKIAKH 105 (106)
T ss_pred -cCCHHHHHHHHHhc
Confidence 45566888887754
No 13
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.86 E-value=3.7e-21 Score=149.47 Aligned_cols=100 Identities=18% Similarity=0.383 Sum_probs=86.2
Q ss_pred CeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhC----C---CeEEEEEEccCcHHHHHhCCCCc
Q 023089 108 NMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELN----P---NAIFLKVNYEELKTMCHSLHIHV 180 (287)
Q Consensus 108 ~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~----~---~v~~~~vd~~~~~~l~~~~~V~~ 180 (287)
.++++ +.++|.+.+ ..+++++|+||||||++|+++.|.|+++++.+ + ++.+++|||+++++++++|+|++
T Consensus 2 ~v~~l-~~~~f~~~i--~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~ 78 (108)
T cd02996 2 EIVSL-TSGNIDDIL--QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINK 78 (108)
T ss_pred ceEEc-CHhhHHHHH--hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCc
Confidence 35667 568898876 46789999999999999999999999998763 2 38999999999999999999999
Q ss_pred ccEEEEEECCCceEEEEecCCCCHHHHHHHH
Q 023089 181 LPFFKFYRGSEGHLCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 181 ~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i 211 (287)
+||+++|++|+.....|. |.++.+.|.+||
T Consensus 79 ~Ptl~~~~~g~~~~~~~~-g~~~~~~l~~fi 108 (108)
T cd02996 79 YPTLKLFRNGMMMKREYR-GQRSVEALAEFV 108 (108)
T ss_pred CCEEEEEeCCcCcceecC-CCCCHHHHHhhC
Confidence 999999998763346676 899999999885
No 14
>PHA02278 thioredoxin-like protein
Probab=99.86 E-value=5.4e-21 Score=147.61 Aligned_cols=94 Identities=19% Similarity=0.262 Sum_probs=79.8
Q ss_pred CCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC-CeEEEEEEccCc----HHHHHhCCCCcccEEEEE
Q 023089 113 QSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP-NAIFLKVNYEEL----KTMCHSLHIHVLPFFKFY 187 (287)
Q Consensus 113 ~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~-~v~~~~vd~~~~----~~l~~~~~V~~~PTi~~f 187 (287)
++.++|.+.+ ..+++++|+|||||||||+.+.|.++++++++. ++.|++||++.+ ++++++|+|.++||+++|
T Consensus 2 ~~~~~~~~~i--~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f 79 (103)
T PHA02278 2 NSLVDLNTAI--RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY 79 (103)
T ss_pred CCHHHHHHHH--hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence 4678898888 578999999999999999999999999998853 478999999986 689999999999999999
Q ss_pred ECCCceEEEEecCCCCHHHHHHH
Q 023089 188 RGSEGHLCSFSCTNATIKKFKDA 210 (287)
Q Consensus 188 ~~g~g~~~~~~~g~~~~~~l~~~ 210 (287)
++|+ .+....|..+.+.|.++
T Consensus 80 k~G~--~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 80 KDGQ--LVKKYEDQVTPMQLQEL 100 (103)
T ss_pred ECCE--EEEEEeCCCCHHHHHhh
Confidence 9964 44444487888887664
No 15
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.85 E-value=1e-20 Score=143.52 Aligned_cols=94 Identities=19% Similarity=0.363 Sum_probs=81.9
Q ss_pred HHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceEE
Q 023089 117 ELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLC 195 (287)
Q Consensus 117 ~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~ 195 (287)
+|.+.+..+.++++||+||||||++|+++.|.++++++.+++ +.+++||+++++.++++|+|.++||+++|++|+ ...
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~-~~~ 80 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQ-PVD 80 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCE-Eee
Confidence 466777655688999999999999999999999999999875 889999999999999999999999999998753 334
Q ss_pred EEecCCCCHHHHHHHHH
Q 023089 196 SFSCTNATIKKFKDALA 212 (287)
Q Consensus 196 ~~~~g~~~~~~l~~~i~ 212 (287)
.+. |..+.++|.++|+
T Consensus 81 ~~~-g~~~~~~l~~~l~ 96 (96)
T cd02956 81 GFQ-GAQPEEQLRQMLD 96 (96)
T ss_pred eec-CCCCHHHHHHHhC
Confidence 455 8899999999874
No 16
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.85 E-value=1.8e-20 Score=151.75 Aligned_cols=106 Identities=16% Similarity=0.190 Sum_probs=91.3
Q ss_pred eEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHHHhCCCCcccEEE-E
Q 023089 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMCHSLHIHVLPFFK-F 186 (287)
Q Consensus 109 v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~~~~~V~~~PTi~-~ 186 (287)
+.++.+.++|++.+....+++|||+|||+||+||+.+.|.++++++++++ +.|++||+|++++++++|+|++.||++ |
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~f 84 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFF 84 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEE
Confidence 45678899999999766789999999999999999999999999999988 888999999999999999999777666 8
Q ss_pred EECCCceEEEEecC--------CCCHHHHHHHHHHhc
Q 023089 187 YRGSEGHLCSFSCT--------NATIKKFKDALAKHG 215 (287)
Q Consensus 187 f~~g~g~~~~~~~g--------~~~~~~l~~~i~~~~ 215 (287)
|++|+. .+.+..| ..+.++|++.++...
T Consensus 85 fk~g~~-~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 85 FRNKHI-MIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred EECCeE-EEEEecccccccccccCCHHHHHHHHHHHH
Confidence 898753 5555446 578889999888763
No 17
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.84 E-value=7.8e-20 Score=140.85 Aligned_cols=97 Identities=19% Similarity=0.320 Sum_probs=83.7
Q ss_pred EeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC--eEEEEEEccCcHHHHHhCCCCcccEEEEEE
Q 023089 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN--AIFLKVNYEELKTMCHSLHIHVLPFFKFYR 188 (287)
Q Consensus 111 ~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~--v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~ 188 (287)
.+.+.++|.+.+ +++++++|+|||+||++|+.+.|.++++++.+++ +.|+.+|++ +++++++|+|+++||+++|+
T Consensus 3 ~i~~~~~~~~~i--~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~ 79 (102)
T cd02948 3 EINNQEEWEELL--SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYK 79 (102)
T ss_pred EccCHHHHHHHH--ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEE
Confidence 467888998876 4789999999999999999999999999999863 889999999 77899999999999999999
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHH
Q 023089 189 GSEGHLCSFSCTNATIKKFKDALAK 213 (287)
Q Consensus 189 ~g~g~~~~~~~g~~~~~~l~~~i~~ 213 (287)
+| +.+....| .+.+.+.++|++
T Consensus 80 ~g--~~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 80 NG--ELVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred CC--EEEEEEec-CChHHHHHHHhh
Confidence 85 45555434 588999998875
No 18
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.84 E-value=5.5e-20 Score=140.89 Aligned_cols=98 Identities=15% Similarity=0.348 Sum_probs=84.5
Q ss_pred CeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccCcHHHHHhCCCCcccEEE
Q 023089 108 NMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEELKTMCHSLHIHVLPFFK 185 (287)
Q Consensus 108 ~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~~~~l~~~~~V~~~PTi~ 185 (287)
.|+++ +.++|.+.+ . +. ++|+||||||++|+.+.|.|+++++.+. ++.++++|+++++.++++|+|.++||++
T Consensus 2 ~v~~l-~~~~f~~~~-~--~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 2 NVVEL-TDSNWTLVL-E--GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIY 76 (101)
T ss_pred ceEEc-ChhhHHHHh-C--CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEE
Confidence 35677 568898765 2 33 7899999999999999999999998865 4899999999999999999999999999
Q ss_pred EEECCCceEEEEecCCCCHHHHHHHHHH
Q 023089 186 FYRGSEGHLCSFSCTNATIKKFKDALAK 213 (287)
Q Consensus 186 ~f~~g~g~~~~~~~g~~~~~~l~~~i~~ 213 (287)
+|++|+ +..+. |.++.++|.+||++
T Consensus 77 ~~~~g~--~~~~~-G~~~~~~l~~~i~~ 101 (101)
T cd02994 77 HAKDGV--FRRYQ-GPRDKEDLISFIEE 101 (101)
T ss_pred EeCCCC--EEEec-CCCCHHHHHHHHhC
Confidence 998864 56676 89999999999874
No 19
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.84 E-value=3.9e-20 Score=146.35 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=89.3
Q ss_pred CeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChh--HH--HHHHHHHHHHHhC--C-CeEEEEEEccCcHHHHHhCCCCc
Q 023089 108 NMIEIQSAQELVDALRNGGDRLVILDFYSPGCGG--CK--SLHPKICQLAELN--P-NAIFLKVNYEELKTMCHSLHIHV 180 (287)
Q Consensus 108 ~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~--Ck--~l~p~~~~la~~~--~-~v~~~~vd~~~~~~l~~~~~V~~ 180 (287)
.+..+ +.++|.+.+.. ++.++|++||++||++ |+ .+.|.+++++.++ . ++.|++||++++++++++|+|++
T Consensus 10 ~v~~l-t~~nF~~~v~~-~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 10 RVIDL-NEKNYKQVLKK-YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred ceeeC-ChhhHHHHHHh-CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence 56677 45889888754 7789999999999987 99 8999999999987 4 59999999999999999999999
Q ss_pred ccEEEEEECCCceEEEEecCCCCHHHHHHHHHHh
Q 023089 181 LPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 181 ~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
+||+++|++|+ ++.|. |.++.+.|.+||++.
T Consensus 88 iPTl~lfk~G~--~v~~~-G~~~~~~l~~~l~~~ 118 (120)
T cd03065 88 EDSIYVFKDDE--VIEYD-GEFAADTLVEFLLDL 118 (120)
T ss_pred ccEEEEEECCE--EEEee-CCCCHHHHHHHHHHH
Confidence 99999999864 66676 999999999999864
No 20
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.83 E-value=4.6e-20 Score=144.37 Aligned_cols=98 Identities=12% Similarity=0.132 Sum_probs=85.3
Q ss_pred CHhHHHHHHH-cCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccCcHHHHHhCCCCcccEEEEEECC
Q 023089 114 SAQELVDALR-NGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGS 190 (287)
Q Consensus 114 s~~~f~~~i~-~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g 190 (287)
+.++|.+.+. ...+++++|+||||||++|+.+.|.|++++++++ ++.+++||+++++.++++++|+++||+++|++|
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence 5677776554 3468999999999999999999999999999986 589999999999999999999999999999985
Q ss_pred CceEEEEecCCCCHHHHHHHHHH
Q 023089 191 EGHLCSFSCTNATIKKFKDALAK 213 (287)
Q Consensus 191 ~g~~~~~~~g~~~~~~l~~~i~~ 213 (287)
+.+.+..|..+.+.|.+||++
T Consensus 90 --~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 90 --QVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred --EEEEEecCCCCHHHHHHHHhc
Confidence 455555588999999999985
No 21
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.83 E-value=4.8e-20 Score=142.87 Aligned_cols=100 Identities=20% Similarity=0.451 Sum_probs=86.9
Q ss_pred eEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccC--cHHHHHhCCCCcccEEE
Q 023089 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEE--LKTMCHSLHIHVLPFFK 185 (287)
Q Consensus 109 v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~--~~~l~~~~~V~~~PTi~ 185 (287)
+.++ +.++|.+.+. +.+++++|+|||+||++|+++.|.|+++++.+.+ +.++.+|++. ++.++++|+|.++||++
T Consensus 2 v~~l-~~~~~~~~i~-~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYEL-TPKNFDKVVH-NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEc-chhhHHHHHh-cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 4566 4578887775 4678899999999999999999999999999865 8999999998 88999999999999999
Q ss_pred EEECCC----ceEEEEecCCCCHHHHHHHH
Q 023089 186 FYRGSE----GHLCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 186 ~f~~g~----g~~~~~~~g~~~~~~l~~~i 211 (287)
+|++|+ .....|. |.++.+.|.+||
T Consensus 80 ~~~~~~~~~~~~~~~~~-G~~~~~~l~~fi 108 (109)
T cd03002 80 VFRPPKKASKHAVEDYN-GERSAKAIVDFV 108 (109)
T ss_pred EEeCCCccccccccccc-CccCHHHHHHHh
Confidence 998875 2356676 899999999997
No 22
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.83 E-value=1e-19 Score=142.97 Aligned_cols=83 Identities=24% Similarity=0.423 Sum_probs=77.6
Q ss_pred CCeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEE
Q 023089 107 PNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKF 186 (287)
Q Consensus 107 ~~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~ 186 (287)
..+.+|.+.++|.+.+ .++++++|+||+|||++|+.+.|.+++++++++++.|++||++++++++++|+|.++||+++
T Consensus 4 g~v~~i~~~~~~~~~i--~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~ 81 (113)
T cd02989 4 GKYREVSDEKEFFEIV--KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVIL 81 (113)
T ss_pred CCeEEeCCHHHHHHHH--hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEE
Confidence 4678898889999988 45789999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCC
Q 023089 187 YRGSE 191 (287)
Q Consensus 187 f~~g~ 191 (287)
|++|+
T Consensus 82 fk~G~ 86 (113)
T cd02989 82 FKNGK 86 (113)
T ss_pred EECCE
Confidence 99975
No 23
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.4e-20 Score=164.28 Aligned_cols=107 Identities=17% Similarity=0.297 Sum_probs=93.4
Q ss_pred CeEEeCCHhHHHHHHHcC-CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHHHhCCCCcccEEE
Q 023089 108 NMIEIQSAQELVDALRNG-GDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMCHSLHIHVLPFFK 185 (287)
Q Consensus 108 ~v~~i~s~~~f~~~i~~~-~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~~~~~V~~~PTi~ 185 (287)
.++++ |..+|.+.+... ..+||||+||||||++|+.+.|.+++++..|.+ +.+++||||+++.++.+|+|+++||++
T Consensus 24 ~I~dv-T~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 24 GIKDV-TEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred cceec-hHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 36777 458888887744 455999999999999999999999999999987 999999999999999999999999999
Q ss_pred EEECCCceEEEEecCCCCHHHHHHHHHHhcCC
Q 023089 186 FYRGSEGHLCSFSCTNATIKKFKDALAKHGTD 217 (287)
Q Consensus 186 ~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~~~ 217 (287)
.|++| +++.-..|....+.+++||++++..
T Consensus 103 af~dG--qpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 103 AFKDG--QPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EeeCC--cCccccCCCCcHHHHHHHHHHhcCh
Confidence 99995 4554334999999999999998654
No 24
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.82 E-value=1.1e-19 Score=141.10 Aligned_cols=99 Identities=14% Similarity=0.241 Sum_probs=83.5
Q ss_pred HhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHHHhCCCCcccEEEEEECCCce
Q 023089 115 AQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGH 193 (287)
Q Consensus 115 ~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~ 193 (287)
.++|++.+....+++|+|+|+|+||++|+.|.|.++++++++++ +.|++||+++++++++.|+|.+.||++||++|+.-
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 46788888766799999999999999999999999999999999 99999999999999999999999999999997633
Q ss_pred EEEEecC--------CCCHHHHHHHHHH
Q 023089 194 LCSFSCT--------NATIKKFKDALAK 213 (287)
Q Consensus 194 ~~~~~~g--------~~~~~~l~~~i~~ 213 (287)
.+.+..| ..+.++|++.++.
T Consensus 82 ~~d~gt~~~~k~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 82 KVDYGSPDHTKFVGSFKTKQDFIDLIEV 109 (114)
T ss_pred EEecCCCCCcEEEEEcCchhHHHHHHHH
Confidence 3443222 2356777777664
No 25
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.82 E-value=1.7e-19 Score=138.17 Aligned_cols=100 Identities=19% Similarity=0.374 Sum_probs=87.8
Q ss_pred eEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHHHhCCCCcccEEEEE
Q 023089 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMCHSLHIHVLPFFKFY 187 (287)
Q Consensus 109 v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~~~~~V~~~PTi~~f 187 (287)
|.++ +.++|.+.+.. .+++++|.||++||++|+++.|.|.++++++++ +.++.+|++++++++++|+|+++||+++|
T Consensus 2 v~~l-~~~~~~~~i~~-~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVEL-TDSNFDKKVLN-SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEc-CHHhHHHHHhc-CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 4556 56788887754 567899999999999999999999999999764 89999999999999999999999999999
Q ss_pred ECCCceEEEEecCCCCHHHHHHHH
Q 023089 188 RGSEGHLCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 188 ~~g~g~~~~~~~g~~~~~~l~~~i 211 (287)
++|+.....|. |.++.++|.+|+
T Consensus 80 ~~~~~~~~~~~-g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKNSPQDYQ-GGRTAKAIVSAA 102 (103)
T ss_pred CCCCcceeecC-CCCCHHHHHHHh
Confidence 98755677888 889999999986
No 26
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.82 E-value=1.1e-19 Score=141.69 Aligned_cols=102 Identities=15% Similarity=0.311 Sum_probs=85.9
Q ss_pred eEEeCCHhHHHHHHH-cCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccC-cHHHHH-hCCCCcccE
Q 023089 109 MIEIQSAQELVDALR-NGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEE-LKTMCH-SLHIHVLPF 183 (287)
Q Consensus 109 v~~i~s~~~f~~~i~-~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~-~~~l~~-~~~V~~~PT 183 (287)
|+++ +.++|...+. .+++++++|.||||||+||+++.|.|+++++.+. ++.++.||++. +..++. .|+|+++||
T Consensus 3 v~~~-~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 3 VVTL-SRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred ceec-cHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 5666 5678877764 3467999999999999999999999999999886 49999999997 577886 499999999
Q ss_pred EEEEECCCceEEEEecCCCCHHHHHHHH
Q 023089 184 FKFYRGSEGHLCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 184 i~~f~~g~g~~~~~~~g~~~~~~l~~~i 211 (287)
+++|++|...+..|.++.++.+.|..||
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999887667888983358999998885
No 27
>PRK09381 trxA thioredoxin; Provisional
Probab=99.82 E-value=3.3e-19 Score=138.56 Aligned_cols=105 Identities=15% Similarity=0.325 Sum_probs=89.9
Q ss_pred CCeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHHHhCCCCcccEEE
Q 023089 107 PNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMCHSLHIHVLPFFK 185 (287)
Q Consensus 107 ~~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~~~~~V~~~PTi~ 185 (287)
..|+++ +.++|.+.+. +.+++++|+||+|||++|+.+.|.|+++++.+++ +.++.+|++.++.++++|+|+++||++
T Consensus 3 ~~v~~~-~~~~~~~~v~-~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 80 (109)
T PRK09381 3 DKIIHL-TDDSFDTDVL-KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 80 (109)
T ss_pred Ccceee-ChhhHHHHHh-cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEE
Confidence 346777 4578887765 4688999999999999999999999999999865 899999999999999999999999999
Q ss_pred EEECCCceEEEEecCCCCHHHHHHHHHHhc
Q 023089 186 FYRGSEGHLCSFSCTNATIKKFKDALAKHG 215 (287)
Q Consensus 186 ~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~ 215 (287)
+|++| +++....|..+.++|.++|++++
T Consensus 81 ~~~~G--~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 81 LFKNG--EVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEeCC--eEEEEecCCCCHHHHHHHHHHhc
Confidence 99875 44443348889999999999864
No 28
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.82 E-value=1.4e-19 Score=138.37 Aligned_cols=97 Identities=19% Similarity=0.452 Sum_probs=83.5
Q ss_pred eEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC----CeEEEEEEccCcHHHHHhCCCCcccEE
Q 023089 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP----NAIFLKVNYEELKTMCHSLHIHVLPFF 184 (287)
Q Consensus 109 v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~----~v~~~~vd~~~~~~l~~~~~V~~~PTi 184 (287)
++++ +.++|.+.+. .+ .++|+|||+||++|+.+.|.++++++++. ++.+++||+++++.++++|+|.++||+
T Consensus 2 ~~~l-~~~~f~~~~~--~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 77 (102)
T cd03005 2 VLEL-TEDNFDHHIA--EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTL 77 (102)
T ss_pred eeEC-CHHHHHHHhh--cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEE
Confidence 4556 5678988873 33 59999999999999999999999999874 499999999999999999999999999
Q ss_pred EEEECCCceEEEEecCCCCHHHHHHHH
Q 023089 185 KFYRGSEGHLCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 185 ~~f~~g~g~~~~~~~g~~~~~~l~~~i 211 (287)
++|++|+ .+..+. |.++.++|.+||
T Consensus 78 ~~~~~g~-~~~~~~-G~~~~~~l~~~i 102 (102)
T cd03005 78 LLFKDGE-KVDKYK-GTRDLDSLKEFV 102 (102)
T ss_pred EEEeCCC-eeeEee-CCCCHHHHHhhC
Confidence 9998875 556677 899999998875
No 29
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.82 E-value=3.2e-19 Score=155.62 Aligned_cols=108 Identities=10% Similarity=0.231 Sum_probs=93.9
Q ss_pred CCeEEeCCHhHHHHHHHcC---CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHHHhCCCCccc
Q 023089 107 PNMIEIQSAQELVDALRNG---GDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMCHSLHIHVLP 182 (287)
Q Consensus 107 ~~v~~i~s~~~f~~~i~~~---~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~~~~~V~~~P 182 (287)
..++++ +.++|++.+... .+++++|+||||||++|+++.|.|+++++++++ +.++++|++++++++++|+|+++|
T Consensus 30 ~~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 30 NALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 456777 578898876432 358999999999999999999999999999876 899999999999999999999999
Q ss_pred EEEEEECCCceEEEEecCCCCHHHHHHHHHHhcCC
Q 023089 183 FFKFYRGSEGHLCSFSCTNATIKKFKDALAKHGTD 217 (287)
Q Consensus 183 Ti~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~~~ 217 (287)
|+++|++| +++.+..|.++.++|.+|+.++...
T Consensus 109 Tl~~f~~G--~~v~~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 109 TLLLFDKG--KMYQYEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred EEEEEECC--EEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 99999974 5777776889999999999988543
No 30
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.5e-19 Score=155.63 Aligned_cols=110 Identities=26% Similarity=0.516 Sum_probs=100.0
Q ss_pred CCeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEE
Q 023089 107 PNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKF 186 (287)
Q Consensus 107 ~~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~ 186 (287)
++|+.|.+..+|+..+.....+.++|+|||.|||||+++.|.|+.|+.+|++..|++||+++....+..+||...||+++
T Consensus 1 m~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFif 80 (288)
T KOG0908|consen 1 MPVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIF 80 (288)
T ss_pred CCeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEE
Confidence 46889999999999998878899999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCceEEEEecCCCCHHHHHHHHHHhcCCCC
Q 023089 187 YRGSEGHLCSFSCTNATIKKFKDALAKHGTDRC 219 (287)
Q Consensus 187 f~~g~g~~~~~~~g~~~~~~l~~~i~~~~~~~~ 219 (287)
|++|. ++..+. +.+...|++.+.++.....
T Consensus 81 f~ng~-kid~~q--GAd~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 81 FRNGV-KIDQIQ--GADASGLEEKVAKYASTSA 110 (288)
T ss_pred EecCe-Eeeeec--CCCHHHHHHHHHHHhccCc
Confidence 99975 666664 6889999999999966543
No 31
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.81 E-value=3.5e-19 Score=139.69 Aligned_cols=83 Identities=31% Similarity=0.572 Sum_probs=74.3
Q ss_pred CCeEEeCCHhHHHHHHHcCC-CCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEE
Q 023089 107 PNMIEIQSAQELVDALRNGG-DRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185 (287)
Q Consensus 107 ~~v~~i~s~~~f~~~i~~~~-~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~ 185 (287)
..+.++++ ++|.+.+...+ +++++|+||+|||++|+.+.|.+++++++++++.|++||++++ .++++|+|.++||++
T Consensus 4 g~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 35678866 89988885422 4899999999999999999999999999999999999999999 999999999999999
Q ss_pred EEECCC
Q 023089 186 FYRGSE 191 (287)
Q Consensus 186 ~f~~g~ 191 (287)
+|++|+
T Consensus 82 ~f~~G~ 87 (113)
T cd02957 82 VYKNGE 87 (113)
T ss_pred EEECCE
Confidence 999964
No 32
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.80 E-value=4.7e-19 Score=135.70 Aligned_cols=100 Identities=18% Similarity=0.400 Sum_probs=85.5
Q ss_pred CeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC---eEEEEEEccCcHHHHHhCCCCcccEE
Q 023089 108 NMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN---AIFLKVNYEELKTMCHSLHIHVLPFF 184 (287)
Q Consensus 108 ~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~---v~~~~vd~~~~~~l~~~~~V~~~PTi 184 (287)
+|.++ +.++|.+.+.. .+++++|+||+|||++|+.+.|.|+++++.+.+ +.++++|++++ +++..+++.++||+
T Consensus 1 ~v~~l-~~~~f~~~i~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~ 77 (104)
T cd02995 1 PVKVV-VGKNFDEVVLD-SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTI 77 (104)
T ss_pred CeEEE-chhhhHHHHhC-CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEE
Confidence 35667 46788777654 568999999999999999999999999998754 99999999998 57888999999999
Q ss_pred EEEECCC-ceEEEEecCCCCHHHHHHHH
Q 023089 185 KFYRGSE-GHLCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 185 ~~f~~g~-g~~~~~~~g~~~~~~l~~~i 211 (287)
++|++|+ .+...|. |.++.++|.+||
T Consensus 78 ~~~~~~~~~~~~~~~-g~~~~~~l~~fi 104 (104)
T cd02995 78 LFFPAGDKSNPIKYE-GDRTLEDLIKFI 104 (104)
T ss_pred EEEcCCCcCCceEcc-CCcCHHHHHhhC
Confidence 9998875 4567777 899999999885
No 33
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.80 E-value=3.2e-19 Score=139.81 Aligned_cols=99 Identities=9% Similarity=0.198 Sum_probs=85.2
Q ss_pred eEEeCCHhHHHHHHHcCCCCeEEEEEEC--CCCh---hHHHHHHHHHHHHHhCCCeEEEEEEc-----cCcHHHHHhCCC
Q 023089 109 MIEIQSAQELVDALRNGGDRLVILDFYS--PGCG---GCKSLHPKICQLAELNPNAIFLKVNY-----EELKTMCHSLHI 178 (287)
Q Consensus 109 v~~i~s~~~f~~~i~~~~~k~vlV~Fya--pWC~---~Ck~l~p~~~~la~~~~~v~~~~vd~-----~~~~~l~~~~~V 178 (287)
++.+ +..+|++.+ .+++.+||.||| |||+ ||++++|.+.+.+.. +.+++||| +++.+||++|+|
T Consensus 3 ~v~L-~~~nF~~~v--~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~---v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 3 CVDL-DTVTFYKVI--PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD---LLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred eeEC-ChhhHHHHH--hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc---eEEEEEecccccchhhHHHHHHhCC
Confidence 4556 568899987 568999999999 9999 999999988777653 89999999 568899999999
Q ss_pred C--cccEEEEEECCC-ceEEEEecCC-CCHHHHHHHHHHh
Q 023089 179 H--VLPFFKFYRGSE-GHLCSFSCTN-ATIKKFKDALAKH 214 (287)
Q Consensus 179 ~--~~PTi~~f~~g~-g~~~~~~~g~-~~~~~l~~~i~~~ 214 (287)
+ +|||+++|++|+ .+++.|. |. |+.+.|.+||.++
T Consensus 77 ~~~gyPTl~lF~~g~~~~~~~Y~-G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 77 DKESYPVIYLFHGGDFENPVPYS-GADVTVDALQRFLKGN 115 (116)
T ss_pred CcCCCCEEEEEeCCCcCCCccCC-CCcccHHHHHHHHHhc
Confidence 9 999999999874 3578898 65 9999999999876
No 34
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.9e-19 Score=170.88 Aligned_cols=107 Identities=19% Similarity=0.401 Sum_probs=94.8
Q ss_pred CCCCeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhC----CCeEEEEEEccCcHHHHHhCCCCc
Q 023089 105 LKPNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELN----PNAIFLKVNYEELKTMCHSLHIHV 180 (287)
Q Consensus 105 ~~~~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~----~~v~~~~vd~~~~~~l~~~~~V~~ 180 (287)
....|.++ +.++|.+.| ..+..++|.||||||+||+++.|.|++.|+.. +.+.+++|||+++.++|.+|+|++
T Consensus 23 ~~~~Vl~L-t~dnf~~~i--~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~g 99 (493)
T KOG0190|consen 23 AEEDVLVL-TKDNFKETI--NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRG 99 (493)
T ss_pred cccceEEE-ecccHHHHh--ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCC
Confidence 34566777 458898888 67899999999999999999999999999875 359999999999999999999999
Q ss_pred ccEEEEEECCCceEEEEecCCCCHHHHHHHHHHhcC
Q 023089 181 LPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKHGT 216 (287)
Q Consensus 181 ~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~~ 216 (287)
|||+.+|++|. .+..|. |+|+.+.+..|+.++..
T Consensus 100 yPTlkiFrnG~-~~~~Y~-G~r~adgIv~wl~kq~g 133 (493)
T KOG0190|consen 100 YPTLKIFRNGR-SAQDYN-GPREADGIVKWLKKQSG 133 (493)
T ss_pred CCeEEEEecCC-cceecc-CcccHHHHHHHHHhccC
Confidence 99999999975 368898 99999999999999844
No 35
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.80 E-value=1.2e-18 Score=143.46 Aligned_cols=90 Identities=13% Similarity=0.312 Sum_probs=76.6
Q ss_pred CCeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccCcHHHHHhCCCCc----
Q 023089 107 PNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEELKTMCHSLHIHV---- 180 (287)
Q Consensus 107 ~~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~~~~l~~~~~V~~---- 180 (287)
..++++ +.++|.+.+..+.+++++|+||||||++|+++.|.|+++++++. ++.|++||++++++++++|+|.+
T Consensus 28 ~~v~~l-~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v 106 (152)
T cd02962 28 EHIKYF-TPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLS 106 (152)
T ss_pred CccEEc-CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCc
Confidence 355666 56889888765567899999999999999999999999999985 49999999999999999999988
Q ss_pred --ccEEEEEECCCceEEEEe
Q 023089 181 --LPFFKFYRGSEGHLCSFS 198 (287)
Q Consensus 181 --~PTi~~f~~g~g~~~~~~ 198 (287)
+||+++|++|+ .+.++.
T Consensus 107 ~~~PT~ilf~~Gk-~v~r~~ 125 (152)
T cd02962 107 KQLPTIILFQGGK-EVARRP 125 (152)
T ss_pred CCCCEEEEEECCE-EEEEEe
Confidence 99999999865 333443
No 36
>PTZ00051 thioredoxin; Provisional
Probab=99.79 E-value=1.7e-18 Score=131.70 Aligned_cols=95 Identities=26% Similarity=0.480 Sum_probs=82.0
Q ss_pred eEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEE
Q 023089 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYR 188 (287)
Q Consensus 109 v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~ 188 (287)
+.++++.++|.+.+ +.+++++|+||++||++|+.+.|.++++++.++++.++.+|++++..++++|+|.++||+++|+
T Consensus 2 v~~i~~~~~~~~~~--~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 2 VHIVTSQAEFESTL--SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred eEEecCHHHHHHHH--hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence 57888888888876 4689999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceEEEEecCCCCHHHHH
Q 023089 189 GSEGHLCSFSCTNATIKKFK 208 (287)
Q Consensus 189 ~g~g~~~~~~~g~~~~~~l~ 208 (287)
+|+ ....+. | ...++|.
T Consensus 80 ~g~-~~~~~~-G-~~~~~~~ 96 (98)
T PTZ00051 80 NGS-VVDTLL-G-ANDEALK 96 (98)
T ss_pred CCe-EEEEEe-C-CCHHHhh
Confidence 864 333444 4 4566654
No 37
>PRK10996 thioredoxin 2; Provisional
Probab=99.79 E-value=3e-18 Score=139.44 Aligned_cols=102 Identities=22% Similarity=0.436 Sum_probs=88.1
Q ss_pred CeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC-CeEEEEEEccCcHHHHHhCCCCcccEEEE
Q 023089 108 NMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP-NAIFLKVNYEELKTMCHSLHIHVLPFFKF 186 (287)
Q Consensus 108 ~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~-~v~~~~vd~~~~~~l~~~~~V~~~PTi~~ 186 (287)
.+.++ +.++|.+.+ +++++++|+|||+||++|+.+.|.++++++++. ++.++++|++++++++++|+|.++||+++
T Consensus 36 ~~i~~-~~~~~~~~i--~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii 112 (139)
T PRK10996 36 EVINA-TGETLDKLL--QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMI 112 (139)
T ss_pred CCEEc-CHHHHHHHH--hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEE
Confidence 34555 567888776 468999999999999999999999999999875 59999999999999999999999999999
Q ss_pred EECCCceEEEEecCCCCHHHHHHHHHHh
Q 023089 187 YRGSEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 187 f~~g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
|++| +.+....|..+.+.|.+||+++
T Consensus 113 ~~~G--~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 113 FKNG--QVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EECC--EEEEEEcCCCCHHHHHHHHHHh
Confidence 9875 4554444889999999999875
No 38
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.79 E-value=1.4e-18 Score=132.45 Aligned_cols=97 Identities=21% Similarity=0.442 Sum_probs=87.1
Q ss_pred CHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC---CeEEEEEEccCcHHHHHhCCCCcccEEEEEECC
Q 023089 114 SAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP---NAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGS 190 (287)
Q Consensus 114 s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~---~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g 190 (287)
+.++|.+.+ .++++++|.||++||++|+.+.|.|+++++.+. ++.++.+|+++++.++++|+|.++||+++|++|
T Consensus 2 ~~~~~~~~~--~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 2 TASNFDDIV--LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred chhhHHHHh--ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 457787776 378999999999999999999999999999876 499999999999999999999999999999887
Q ss_pred CceEEEEecCCCCHHHHHHHHHHh
Q 023089 191 EGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 191 ~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
+ .+..|. |..+.++|..||+++
T Consensus 80 ~-~~~~~~-g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 K-KPVDYE-GGRDLEAIVEFVNEK 101 (102)
T ss_pred C-cceeec-CCCCHHHHHHHHHhc
Confidence 5 477787 889999999999875
No 39
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.79 E-value=1.7e-18 Score=146.18 Aligned_cols=108 Identities=22% Similarity=0.435 Sum_probs=88.6
Q ss_pred CCCeEEeCCHhHHHHHHHcC-CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEE
Q 023089 106 KPNMIEIQSAQELVDALRNG-GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFF 184 (287)
Q Consensus 106 ~~~v~~i~s~~~f~~~i~~~-~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi 184 (287)
-..+.+|++.++|.+.+... .+.+|||+||+|||++|+.|.|.+++|+++|++++|++||++++ .++.+|+|.++||+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTl 139 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPAL 139 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEE
Confidence 35678997779999887542 23599999999999999999999999999999999999999988 89999999999999
Q ss_pred EEEECCC--ceEEEEe---cCCCCHHHHHHHHHHh
Q 023089 185 KFYRGSE--GHLCSFS---CTNATIKKFKDALAKH 214 (287)
Q Consensus 185 ~~f~~g~--g~~~~~~---~g~~~~~~l~~~i~~~ 214 (287)
++|++|+ ++++.+. +...+.+.|..+|.++
T Consensus 140 llyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 140 LVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred EEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 9999975 2222222 1356678888887764
No 40
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.79 E-value=2.5e-18 Score=130.45 Aligned_cols=95 Identities=25% Similarity=0.522 Sum_probs=80.8
Q ss_pred CHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHh-CCCeEEEEEEccCcHHHHHhCCCCcccEEEEEECCCc
Q 023089 114 SAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAEL-NPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEG 192 (287)
Q Consensus 114 s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~-~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g 192 (287)
|.++|.+.+....+++++|+||++||++|+++.|.+++++++ ++++.++++|++++++++++|+|.++||+++|++|
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g-- 78 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNG-- 78 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECC--
Confidence 356788887654469999999999999999999999999999 66799999999999999999999999999999875
Q ss_pred eEEEEecCCCCHHHHHHHH
Q 023089 193 HLCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 193 ~~~~~~~g~~~~~~l~~~i 211 (287)
+.+... .+.+.++|.+.|
T Consensus 79 ~~~~~~-~g~~~~~l~~~~ 96 (97)
T cd02984 79 TIVDRV-SGADPKELAKKV 96 (97)
T ss_pred EEEEEE-eCCCHHHHHHhh
Confidence 455554 346778887765
No 41
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.79 E-value=2e-18 Score=132.28 Aligned_cols=98 Identities=16% Similarity=0.454 Sum_probs=83.8
Q ss_pred eEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC---CeEEEEEEccC--cHHHHHhCCCCcccE
Q 023089 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP---NAIFLKVNYEE--LKTMCHSLHIHVLPF 183 (287)
Q Consensus 109 v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~---~v~~~~vd~~~--~~~l~~~~~V~~~PT 183 (287)
+.++ +..+|.+.+ ..+++++|.|||+||++|+++.|.++++++.+. .+.++.+|++. ++.++++|+|+++||
T Consensus 2 ~~~l-~~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt 78 (104)
T cd02997 2 VVHL-TDEDFRKFL--KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPT 78 (104)
T ss_pred eEEe-chHhHHHHH--hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccE
Confidence 4566 456787776 356799999999999999999999999998875 38999999998 999999999999999
Q ss_pred EEEEECCCceEEEEecCCCCHHHHHHHH
Q 023089 184 FKFYRGSEGHLCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 184 i~~f~~g~g~~~~~~~g~~~~~~l~~~i 211 (287)
+++|++|+ .+..+. |..+.+.+.+||
T Consensus 79 ~~~~~~g~-~~~~~~-g~~~~~~l~~~l 104 (104)
T cd02997 79 FKYFENGK-FVEKYE-GERTAEDIIEFM 104 (104)
T ss_pred EEEEeCCC-eeEEeC-CCCCHHHHHhhC
Confidence 99999865 456666 889999998875
No 42
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.77 E-value=2.4e-18 Score=131.84 Aligned_cols=100 Identities=20% Similarity=0.475 Sum_probs=85.4
Q ss_pred eEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC---CeEEEEEEccC-cHHHHHhCCCCcccEE
Q 023089 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP---NAIFLKVNYEE-LKTMCHSLHIHVLPFF 184 (287)
Q Consensus 109 v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~---~v~~~~vd~~~-~~~l~~~~~V~~~PTi 184 (287)
+.++ +.++|.+.+ .+.+++++|+||++||++|+++.|.|+++++.+. ++.++.+|++. ++.++++|+|.++||+
T Consensus 2 ~~~l-~~~~~~~~~-~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~ 79 (105)
T cd02998 2 VVEL-TDSNFDKVV-GDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTL 79 (105)
T ss_pred eEEc-chhcHHHHh-cCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEE
Confidence 3556 457787765 4456799999999999999999999999999975 49999999999 9999999999999999
Q ss_pred EEEECCCceEEEEecCCCCHHHHHHHH
Q 023089 185 KFYRGSEGHLCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 185 ~~f~~g~g~~~~~~~g~~~~~~l~~~i 211 (287)
++|++|......+. |.++.++|.+||
T Consensus 80 ~~~~~~~~~~~~~~-g~~~~~~l~~~i 105 (105)
T cd02998 80 KFFPKGSTEPVKYE-GGRDLEDLVKFV 105 (105)
T ss_pred EEEeCCCCCccccC-CccCHHHHHhhC
Confidence 99988754566676 889999998875
No 43
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.77 E-value=1.7e-18 Score=133.49 Aligned_cols=94 Identities=18% Similarity=0.326 Sum_probs=78.6
Q ss_pred hHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHH---HHHHHhCC-CeEEEEEEccC----cHHHHHhCCCCcccEEEEE
Q 023089 116 QELVDALRNGGDRLVILDFYSPGCGGCKSLHPKI---CQLAELNP-NAIFLKVNYEE----LKTMCHSLHIHVLPFFKFY 187 (287)
Q Consensus 116 ~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~---~~la~~~~-~v~~~~vd~~~----~~~l~~~~~V~~~PTi~~f 187 (287)
++|.+.+ .++++++|+|||+||++|+.+.|.+ +++++.+. ++.++.||+++ ++.++++|+|.++||+++|
T Consensus 2 ~~~~~~~--~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 2 AALAQAL--AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHHH--HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 4566766 5689999999999999999999988 67888776 69999999987 6789999999999999999
Q ss_pred ECCCce-EEEEecCCCCHHHHHHHHH
Q 023089 188 RGSEGH-LCSFSCTNATIKKFKDALA 212 (287)
Q Consensus 188 ~~g~g~-~~~~~~g~~~~~~l~~~i~ 212 (287)
++|+|+ +..+. |..+.++|.++|+
T Consensus 80 ~~~~g~~~~~~~-G~~~~~~l~~~l~ 104 (104)
T cd02953 80 GPGGEPEPLRLP-GFLTADEFLEALE 104 (104)
T ss_pred CCCCCCCCcccc-cccCHHHHHHHhC
Confidence 853344 44555 8999999998873
No 44
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.76 E-value=5.3e-18 Score=130.83 Aligned_cols=93 Identities=17% Similarity=0.350 Sum_probs=80.3
Q ss_pred hHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC----CeEEEEEEccCcHHHHHhCCCCcccEEEEEECCC
Q 023089 116 QELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP----NAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSE 191 (287)
Q Consensus 116 ~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~----~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~ 191 (287)
++|.+ + ..+++++|.|||+||++|+.+.|.|+++++.+. ++.++.+|+++++.++++|+|.++||+++|++|
T Consensus 7 ~~~~~-~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~- 82 (104)
T cd03000 7 DSFKD-V--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD- 82 (104)
T ss_pred hhhhh-h--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-
Confidence 55655 3 347899999999999999999999999999863 389999999999999999999999999999764
Q ss_pred ceEEEEecCCCCHHHHHHHHHHh
Q 023089 192 GHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 192 g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
....+. |.++.+.|.+|+++.
T Consensus 83 -~~~~~~-G~~~~~~l~~~~~~~ 103 (104)
T cd03000 83 -LAYNYR-GPRTKDDIVEFANRV 103 (104)
T ss_pred -Cceeec-CCCCHHHHHHHHHhh
Confidence 456676 889999999999864
No 45
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.76 E-value=5.5e-18 Score=161.52 Aligned_cols=107 Identities=13% Similarity=0.276 Sum_probs=91.5
Q ss_pred CCCeEEeCCHhHHHHHHH-cCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC--eEEEEEEccCcH-HHH-HhCCCCc
Q 023089 106 KPNMIEIQSAQELVDALR-NGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN--AIFLKVNYEELK-TMC-HSLHIHV 180 (287)
Q Consensus 106 ~~~v~~i~s~~~f~~~i~-~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~--v~~~~vd~~~~~-~l~-~~~~V~~ 180 (287)
.+.|+++ +.++|++.+. .+.++++||+||||||++|+.|.|.|+++++++.+ +.|++||++.+. .++ ++|+|++
T Consensus 350 ~~~Vv~L-~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 350 SNNVVSL-SRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCeEEC-CHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc
Confidence 3467777 5678988874 45789999999999999999999999999999864 899999999753 444 7899999
Q ss_pred ccEEEEEECCCceEEEEecCCCCHHHHHHHHHH
Q 023089 181 LPFFKFYRGSEGHLCSFSCTNATIKKFKDALAK 213 (287)
Q Consensus 181 ~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~ 213 (287)
+||++||++|+.+++.|.+|.|+.+.|..||+.
T Consensus 429 ~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 429 FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred cceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999999999876778897568999999999985
No 46
>PLN02309 5'-adenylylsulfate reductase
Probab=99.76 E-value=6.3e-18 Score=161.03 Aligned_cols=108 Identities=13% Similarity=0.279 Sum_probs=94.0
Q ss_pred CCCeEEeCCHhHHHHHHH-cCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEcc-CcHHHHH-hCCCCc
Q 023089 106 KPNMIEIQSAQELVDALR-NGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYE-ELKTMCH-SLHIHV 180 (287)
Q Consensus 106 ~~~v~~i~s~~~f~~~i~-~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~-~~~~l~~-~~~V~~ 180 (287)
...|+++ +.++|.+.+. .+.++++||+||||||++|+.|.|.|+++++++. ++.|+++|++ .+..++. +|+|++
T Consensus 344 ~~~Vv~L-t~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 344 SQNVVAL-SRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCcEEC-CHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce
Confidence 4567777 5678887764 4578999999999999999999999999999985 4999999999 7788886 699999
Q ss_pred ccEEEEEECCCceEEEEecCCCCHHHHHHHHHHh
Q 023089 181 LPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 181 ~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
+||++||++|..+++.|.++.|+.+.|..||+..
T Consensus 423 ~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999999998777888985689999999999864
No 47
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.76 E-value=1.4e-18 Score=153.33 Aligned_cols=89 Identities=19% Similarity=0.393 Sum_probs=81.6
Q ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC----eEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceEEEEecC
Q 023089 125 GGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN----AIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCT 200 (287)
Q Consensus 125 ~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~----v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g 200 (287)
..+..|+|+||||||+||+++.|+|.++.....+ +++.++||+..+.++.+|+|+|||||.||++ +..+.|. |
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kg--d~a~dYR-G 117 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKG--DHAIDYR-G 117 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecC--CeeeecC-C
Confidence 4678999999999999999999999999987653 8999999999999999999999999999987 4689999 9
Q ss_pred CCCHHHHHHHHHHhcC
Q 023089 201 NATIKKFKDALAKHGT 216 (287)
Q Consensus 201 ~~~~~~l~~~i~~~~~ 216 (287)
+|+.+.+++|-.+...
T Consensus 118 ~R~Kd~iieFAhR~a~ 133 (468)
T KOG4277|consen 118 GREKDAIIEFAHRCAA 133 (468)
T ss_pred CccHHHHHHHHHhccc
Confidence 9999999999987744
No 48
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.76 E-value=1.5e-17 Score=126.26 Aligned_cols=98 Identities=20% Similarity=0.431 Sum_probs=84.5
Q ss_pred CHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC-CeEEEEEEccCcHHHHHhCCCCcccEEEEEECCCc
Q 023089 114 SAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP-NAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEG 192 (287)
Q Consensus 114 s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~-~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g 192 (287)
+.++|.+.+. ..+++++|+||++||++|+.+.|.++++++.++ ++.|+.+|+++++.++++|+|.++||+++|++|+
T Consensus 2 ~~~~~~~~~~-~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~- 79 (101)
T TIGR01068 2 TDANFDETIA-SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK- 79 (101)
T ss_pred CHHHHHHHHh-hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc-
Confidence 4567777764 356799999999999999999999999998887 4999999999999999999999999999998754
Q ss_pred eEEEEecCCCCHHHHHHHHHHh
Q 023089 193 HLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 193 ~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
....+. |..+.+.+.++|+++
T Consensus 80 ~~~~~~-g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 80 EVDRSV-GALPKAALKQLINKN 100 (101)
T ss_pred Eeeeec-CCCCHHHHHHHHHhh
Confidence 333444 888999999999865
No 49
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.76 E-value=1e-17 Score=130.03 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=79.7
Q ss_pred CHhHHHHHHHcCCCCeEEEEEECCC--ChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHHHhCCCCcccEEEEEECC
Q 023089 114 SAQELVDALRNGGDRLVILDFYSPG--CGGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMCHSLHIHVLPFFKFYRGS 190 (287)
Q Consensus 114 s~~~f~~~i~~~~~k~vlV~FyapW--C~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g 190 (287)
+..+|++.+ ..+..++|.|||+| |++|+.+.|.+++++++|++ +.|++||++++++++.+|+|+++||+++|++|
T Consensus 16 ~~~~~~~~~--~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdG 93 (111)
T cd02965 16 DAATLDDWL--AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDG 93 (111)
T ss_pred ccccHHHHH--hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECC
Confidence 567787766 57899999999997 99999999999999999987 88999999999999999999999999999986
Q ss_pred CceEEEEecCCCCHHHHH
Q 023089 191 EGHLCSFSCTNATIKKFK 208 (287)
Q Consensus 191 ~g~~~~~~~g~~~~~~l~ 208 (287)
+.+....|..+.+++.
T Consensus 94 --k~v~~~~G~~~~~e~~ 109 (111)
T cd02965 94 --RYVGVLAGIRDWDEYV 109 (111)
T ss_pred --EEEEEEeCccCHHHHh
Confidence 4554444888887764
No 50
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.75 E-value=2.3e-17 Score=134.67 Aligned_cols=100 Identities=17% Similarity=0.280 Sum_probs=81.8
Q ss_pred hHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCc--HHHHHhCCCCcccEEEEEECCCc
Q 023089 116 QELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEEL--KTMCHSLHIHVLPFFKFYRGSEG 192 (287)
Q Consensus 116 ~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~--~~l~~~~~V~~~PTi~~f~~g~g 192 (287)
.+|.+.+ ..++++||+|||+||++|+.+.|.++++++.+.+ +.|+.||++.. ..++++|+|.++||++||.. +|
T Consensus 11 ~~~~~a~--~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~-~G 87 (142)
T cd02950 11 TPPEVAL--SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDR-EG 87 (142)
T ss_pred CCHHHHH--hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECC-CC
Confidence 3455555 5689999999999999999999999999999864 77888887754 57899999999999999953 24
Q ss_pred eEEEEecCCCCHHHHHHHHHHhcCCC
Q 023089 193 HLCSFSCTNATIKKFKDALAKHGTDR 218 (287)
Q Consensus 193 ~~~~~~~g~~~~~~l~~~i~~~~~~~ 218 (287)
+++....|..+.++|.++|++.....
T Consensus 88 ~~v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 88 NEEGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 56655558889999999999986543
No 51
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.75 E-value=1.4e-17 Score=125.73 Aligned_cols=95 Identities=19% Similarity=0.440 Sum_probs=82.7
Q ss_pred CHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhC---CCeEEEEEEccCcHHHHHhCCCCcccEEEEEECC
Q 023089 114 SAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELN---PNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGS 190 (287)
Q Consensus 114 s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~---~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g 190 (287)
+.++|.+.+ .++++++|.||++||++|+.+.|.|+++++.+ .++.++.+|+++++.++++|+|.++||+++|+++
T Consensus 4 ~~~~~~~~i--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 4 TDDNFDELV--KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cHHHHHHHH--hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 457888877 34569999999999999999999999999988 4599999999999999999999999999999876
Q ss_pred CceEEEEecCCCCHHHHHHHH
Q 023089 191 EGHLCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 191 ~g~~~~~~~g~~~~~~l~~~i 211 (287)
......+. |..+.+++.+|+
T Consensus 82 ~~~~~~~~-g~~~~~~i~~~~ 101 (101)
T cd02961 82 SKEPVKYE-GPRTLESLVEFI 101 (101)
T ss_pred CcccccCC-CCcCHHHHHhhC
Confidence 33666777 778999988774
No 52
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.73 E-value=4.5e-17 Score=127.85 Aligned_cols=94 Identities=12% Similarity=0.154 Sum_probs=81.2
Q ss_pred HHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEECCC-ceEEE
Q 023089 118 LVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSE-GHLCS 196 (287)
Q Consensus 118 f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~-g~~~~ 196 (287)
|.+.+ ..++.++|+|||+||++|+.+.|.++++++.++.+.+..+|++++++++++|+|.++||+++|++|+ ...+.
T Consensus 15 ~~~~l--~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 15 FFKEM--KNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred HHHHh--CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 55655 4577899999999999999999999999999888999999999999999999999999999998764 12235
Q ss_pred EecCCCCHHHHHHHHHHh
Q 023089 197 FSCTNATIKKFKDALAKH 214 (287)
Q Consensus 197 ~~~g~~~~~~l~~~i~~~ 214 (287)
+. |..+.++|.++|+..
T Consensus 93 ~~-G~~~~~el~~~i~~i 109 (113)
T cd02975 93 YY-GLPAGYEFASLIEDI 109 (113)
T ss_pred EE-ecCchHHHHHHHHHH
Confidence 66 788889999998865
No 53
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.73 E-value=6e-17 Score=123.41 Aligned_cols=91 Identities=18% Similarity=0.408 Sum_probs=78.6
Q ss_pred HHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC-CeEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceEEEE
Q 023089 119 VDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP-NAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLCSF 197 (287)
Q Consensus 119 ~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~-~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~ 197 (287)
...+. +.+++++|.||++||++|+.+.|.+++++++++ ++.++.+|++++++++++++|.++||+++|++| +.+..
T Consensus 6 ~~~~~-~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g--~~v~~ 82 (97)
T cd02949 6 RKLYH-ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDK--ELVKE 82 (97)
T ss_pred HHHHH-hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECC--eEEEE
Confidence 34444 478999999999999999999999999999986 499999999999999999999999999999875 44444
Q ss_pred ecCCCCHHHHHHHHH
Q 023089 198 SCTNATIKKFKDALA 212 (287)
Q Consensus 198 ~~g~~~~~~l~~~i~ 212 (287)
..|..+.++|.++|+
T Consensus 83 ~~g~~~~~~~~~~l~ 97 (97)
T cd02949 83 ISGVKMKSEYREFIE 97 (97)
T ss_pred EeCCccHHHHHHhhC
Confidence 448899999998874
No 54
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.73 E-value=4.1e-17 Score=128.31 Aligned_cols=101 Identities=17% Similarity=0.343 Sum_probs=79.2
Q ss_pred CeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC---C-eEEEEEEcc--CcHHHHHhCCCCcc
Q 023089 108 NMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP---N-AIFLKVNYE--ELKTMCHSLHIHVL 181 (287)
Q Consensus 108 ~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~---~-v~~~~vd~~--~~~~l~~~~~V~~~ 181 (287)
+++++ +.++|.+.+.. .+++++|+|||+||++|+.+.|.|+++++.+. + +.++.+||+ .+++++++|+|+++
T Consensus 2 ~v~~l-~~~~f~~~i~~-~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~ 79 (114)
T cd02992 2 PVIVL-DAASFNSALLG-SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGY 79 (114)
T ss_pred CeEEC-CHHhHHHHHhc-CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCC
Confidence 45667 56889888754 45899999999999999999999999999763 3 899999985 47789999999999
Q ss_pred cEEEEEECCCceE---EEEecCCCCHHHHHHH
Q 023089 182 PFFKFYRGSEGHL---CSFSCTNATIKKFKDA 210 (287)
Q Consensus 182 PTi~~f~~g~g~~---~~~~~g~~~~~~l~~~ 210 (287)
||+++|++|..+. ..+.++.+..+.+++.
T Consensus 80 Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (114)
T cd02992 80 PTLRYFPPFSKEATDGLKQEGPERDVNELREA 111 (114)
T ss_pred CEEEEECCCCccCCCCCcccCCccCHHHHHHH
Confidence 9999998875211 3455444666665443
No 55
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.4e-17 Score=155.43 Aligned_cols=178 Identities=17% Similarity=0.230 Sum_probs=137.3
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCceeeeeehhhhhhhHH
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFSINAQASICVSRA 97 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~ 97 (287)
++|+.+++++.++.||.+ ..+.+.+++.+ +|++.+.... ...+.+. +..+.+.+.+|+.....
T Consensus 71 ~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~g----fPtl~~f~~~-~~~~~~~---~~~~~~~~~~~~~~~~~------- 135 (383)
T KOG0191|consen 71 KLAKALKGKVKIGAVDCDEHKDLCEKYGIQG----FPTLKVFRPG-KKPIDYS---GPRNAESLAEFLIKELE------- 135 (383)
T ss_pred HHHHHhcCceEEEEeCchhhHHHHHhcCCcc----CcEEEEEcCC-Cceeecc---CcccHHHHHHHHHHhhc-------
Confidence 688999999999999999 56778999964 9999977633 2222332 35577778877732221
Q ss_pred HHHHhhhCCCC-eEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC---CeEEEEEEccCcHHHH
Q 023089 98 MRWWEKTLKPN-MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP---NAIFLKVNYEELKTMC 173 (287)
Q Consensus 98 ~~~~~~~~~~~-v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~---~v~~~~vd~~~~~~l~ 173 (287)
.......+. +..+. ..+|...+. +.+.+++|.||+|||+||+.+.|.|++++..+. ++.++.+|++.+..++
T Consensus 136 --~~~~~~~~~~v~~l~-~~~~~~~~~-~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~ 211 (383)
T KOG0191|consen 136 --PSVKKLVEGEVFELT-KDNFDETVK-DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLA 211 (383)
T ss_pred --cccccccCCceEEcc-ccchhhhhh-ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHh
Confidence 122223334 66664 456655543 578899999999999999999999999999863 4999999999999999
Q ss_pred HhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHHHHhcCC
Q 023089 174 HSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKHGTD 217 (287)
Q Consensus 174 ~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~~~ 217 (287)
.+++|.++||+++|++|.. ...+..+.|+.+.+..|+++....
T Consensus 212 ~~~~v~~~Pt~~~f~~~~~-~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 212 SRLEVRGYPTLKLFPPGEE-DIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred hhhcccCCceEEEecCCCc-ccccccccccHHHHHHHHHhhcCC
Confidence 9999999999999998763 344445999999999999988655
No 56
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.71 E-value=1.2e-16 Score=139.24 Aligned_cols=164 Identities=12% Similarity=0.085 Sum_probs=112.9
Q ss_pred cccCCCCC-eeeeeeecCC--CccccccccccccccCCceeeeccCCee--eecCCCccccccccCCceeeeeehhhhhh
Q 023089 20 FPSSKDKS-IVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSL--AVSDHKSLTLWHVKAPNKFSINAQASICV 94 (287)
Q Consensus 20 ~~a~~~k~-~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~--ky~~~~~~~~~~~~~i~~f~~~~~~~~~~ 94 (287)
.+|++|.+ ++.++.+|++ ...++.+|+. ..|++.+..++... +|. +..+.+.+.+|+
T Consensus 46 ~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~----~~Pt~~~f~~g~~~~~~~~-----G~~~~~~l~~~i--------- 107 (215)
T TIGR02187 46 ELSEVSPKLKLEIYDFDTPEDKEEAEKYGVE----RVPTTIILEEGKDGGIRYT-----GIPAGYEFAALI--------- 107 (215)
T ss_pred HHHhhCCCceEEEEecCCcccHHHHHHcCCC----ccCEEEEEeCCeeeEEEEe-----ecCCHHHHHHHH---------
Confidence 57778843 3667888865 6678889986 49999976533322 332 222334455555
Q ss_pred hHHHHHHhhhCCCCeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHH
Q 023089 95 SRAMRWWEKTLKPNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCH 174 (287)
Q Consensus 95 ~~~~~~~~~~~~~~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~ 174 (287)
. ..+. ..+.-..+ +.+.. +.+....+..+++.||++||++|+.+.|.+++++..++++.+..+|.++++++++
T Consensus 108 ~---~~~~--~~~~~~~L-~~~~~-~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~ 180 (215)
T TIGR02187 108 E---DIVR--VSQGEPGL-SEKTV-ELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAE 180 (215)
T ss_pred H---HHHH--hcCCCCCC-CHHHH-HHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHH
Confidence 1 1111 11111233 32322 3333223344555599999999999999999999998889999999999999999
Q ss_pred hCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHHHH
Q 023089 175 SLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAK 213 (287)
Q Consensus 175 ~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~ 213 (287)
+|+|.++||++++++| +. +. |..+.++|.++|.+
T Consensus 181 ~~~V~~vPtl~i~~~~--~~--~~-G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 181 KYGVMSVPKIVINKGV--EE--FV-GAYPEEQFLEYILS 214 (215)
T ss_pred HhCCccCCEEEEecCC--EE--EE-CCCCHHHHHHHHHh
Confidence 9999999999999764 32 55 88899999999874
No 57
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.70 E-value=2.7e-16 Score=134.49 Aligned_cols=105 Identities=21% Similarity=0.346 Sum_probs=83.9
Q ss_pred CCCeEEeCCHhHHHHHHHcCC-CCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEE
Q 023089 106 KPNMIEIQSAQELVDALRNGG-DRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFF 184 (287)
Q Consensus 106 ~~~v~~i~s~~~f~~~i~~~~-~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi 184 (287)
-..+.+| +.++|...+...+ +.+|||+||++||++|+.|.|.|++||++|++++|++||++.. +.+|+|.++||+
T Consensus 81 ~G~v~ei-s~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPTl 156 (192)
T cd02988 81 FGEVYEI-SKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPTI 156 (192)
T ss_pred CCeEEEe-CHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCEE
Confidence 3567888 5688887776433 4699999999999999999999999999999999999999864 578999999999
Q ss_pred EEEECCC--ceEEEE---ecCCCCHHHHHHHHHHh
Q 023089 185 KFYRGSE--GHLCSF---SCTNATIKKFKDALAKH 214 (287)
Q Consensus 185 ~~f~~g~--g~~~~~---~~g~~~~~~l~~~i~~~ 214 (287)
++|++|+ ++++++ .+...+.++|..+|.++
T Consensus 157 liyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 157 LVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 9999975 222222 11256788888887754
No 58
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.69 E-value=4.9e-16 Score=123.63 Aligned_cols=98 Identities=11% Similarity=0.143 Sum_probs=76.1
Q ss_pred EEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcH-----------HHHHhCC-
Q 023089 110 IEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK-----------TMCHSLH- 177 (287)
Q Consensus 110 ~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~-----------~l~~~~~- 177 (287)
.++ +.+++.+.+ .+++.++|+||++|||+|+.+.|.+++++++ .++.++.||++.++ ++.++|+
T Consensus 9 ~~i-t~~~~~~~i--~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 9 EVT-TVVRALEAL--DKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred eec-CHHHHHHHH--HcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 344 567888888 4688899999999999999999999999998 45778888887542 4556665
Q ss_pred ---CCcccEEEEEECCCceEEEEecCCCCHHHHHHHHH
Q 023089 178 ---IHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALA 212 (287)
Q Consensus 178 ---V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~ 212 (287)
|.++||+++|++|+ .+-...++..+.++|.+|+.
T Consensus 85 ~~~i~~~PT~v~~k~Gk-~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 85 PTSFMGTPTFVHITDGK-QVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cccCCCCCEEEEEeCCe-EEEEEeCCCCCHHHHHHHhh
Confidence 55699999999965 34444423667999999874
No 59
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.68 E-value=4.8e-16 Score=114.93 Aligned_cols=91 Identities=24% Similarity=0.558 Sum_probs=78.7
Q ss_pred HHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceEEE
Q 023089 117 ELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLCS 196 (287)
Q Consensus 117 ~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~ 196 (287)
+|...+. .+++++|.||++||++|+.+.|.++++++..+++.++.+|++.++.++++|++.++||+++|++|+ .+..
T Consensus 2 ~~~~~~~--~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~-~~~~ 78 (93)
T cd02947 2 EFEELIK--SAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK-EVDR 78 (93)
T ss_pred chHHHHh--cCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCE-EEEE
Confidence 4555553 459999999999999999999999999999888999999999999999999999999999998864 3444
Q ss_pred EecCCCCHHHHHHHH
Q 023089 197 FSCTNATIKKFKDAL 211 (287)
Q Consensus 197 ~~~g~~~~~~l~~~i 211 (287)
+. |..+.+.|.++|
T Consensus 79 ~~-g~~~~~~l~~~i 92 (93)
T cd02947 79 VV-GADPKEELEEFL 92 (93)
T ss_pred Ee-cCCCHHHHHHHh
Confidence 55 788889998887
No 60
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.68 E-value=4.2e-16 Score=149.36 Aligned_cols=104 Identities=22% Similarity=0.443 Sum_probs=90.1
Q ss_pred eEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhC----CCeEEEEEEccCcHHHHHhCCCCcccEE
Q 023089 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELN----PNAIFLKVNYEELKTMCHSLHIHVLPFF 184 (287)
Q Consensus 109 v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~----~~v~~~~vd~~~~~~l~~~~~V~~~PTi 184 (287)
+..+ +.++|.+.+ ..+++++|.||||||++|+++.|.|.++++.+ +++.|++|||++++++|++|+|.++||+
T Consensus 3 v~~l-~~~~~~~~i--~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 79 (462)
T TIGR01130 3 VLVL-TKDNFDDFI--KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTL 79 (462)
T ss_pred ceEC-CHHHHHHHH--hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEE
Confidence 4556 568888877 46789999999999999999999999988874 3499999999999999999999999999
Q ss_pred EEEECCCceEEEEecCCCCHHHHHHHHHHhcC
Q 023089 185 KFYRGSEGHLCSFSCTNATIKKFKDALAKHGT 216 (287)
Q Consensus 185 ~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~~ 216 (287)
++|++|+..+..|. |.++.+.|.+|+.+...
T Consensus 80 ~~~~~g~~~~~~~~-g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 80 KIFRNGEDSVSDYN-GPRDADGIVKYMKKQSG 110 (462)
T ss_pred EEEeCCccceeEec-CCCCHHHHHHHHHHhcC
Confidence 99998752257787 89999999999998754
No 61
>PTZ00102 disulphide isomerase; Provisional
Probab=99.68 E-value=5.5e-16 Score=149.70 Aligned_cols=103 Identities=18% Similarity=0.382 Sum_probs=89.9
Q ss_pred CeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhC----CCeEEEEEEccCcHHHHHhCCCCcccE
Q 023089 108 NMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELN----PNAIFLKVNYEELKTMCHSLHIHVLPF 183 (287)
Q Consensus 108 ~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~----~~v~~~~vd~~~~~~l~~~~~V~~~PT 183 (287)
.+..+ +.++|.+.+ .+++.++|+||||||++|+++.|.|+++++.+ +++.+++|||+++..+|++|+|.++||
T Consensus 33 ~v~~l-~~~~f~~~i--~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt 109 (477)
T PTZ00102 33 HVTVL-TDSTFDKFI--TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPT 109 (477)
T ss_pred CcEEc-chhhHHHHH--hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccE
Confidence 45666 567888877 45789999999999999999999999988664 359999999999999999999999999
Q ss_pred EEEEECCCceEEEEecCCCCHHHHHHHHHHhcC
Q 023089 184 FKFYRGSEGHLCSFSCTNATIKKFKDALAKHGT 216 (287)
Q Consensus 184 i~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~~ 216 (287)
+++|++|+ .+.|. |.++.+.|.+|++++..
T Consensus 110 ~~~~~~g~--~~~y~-g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 110 IKFFNKGN--PVNYS-GGRTADGIVSWIKKLTG 139 (477)
T ss_pred EEEEECCc--eEEec-CCCCHHHHHHHHHHhhC
Confidence 99999864 34777 89999999999999854
No 62
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.67 E-value=7.7e-16 Score=122.58 Aligned_cols=99 Identities=16% Similarity=0.244 Sum_probs=78.6
Q ss_pred hHHHHHHHcCCC-CeEEEEEECCCChhHHHHHHHHH---HHHHhCC-CeEEEEEEccCc-------------HHHHHhCC
Q 023089 116 QELVDALRNGGD-RLVILDFYSPGCGGCKSLHPKIC---QLAELNP-NAIFLKVNYEEL-------------KTMCHSLH 177 (287)
Q Consensus 116 ~~f~~~i~~~~~-k~vlV~FyapWC~~Ck~l~p~~~---~la~~~~-~v~~~~vd~~~~-------------~~l~~~~~ 177 (287)
+++.+.. .++ ++++|+|||+||++|+++.|.+. .+.+.+. ++.++.||++.. ..++.+|+
T Consensus 4 ~~~~~a~--~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~ 81 (125)
T cd02951 4 EDLAEAA--ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR 81 (125)
T ss_pred HHHHHHH--HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence 4555555 467 99999999999999999999884 5555553 588999999864 68899999
Q ss_pred CCcccEEEEEECCCceEEEEecCCCCHHHHHHHHHHhcC
Q 023089 178 IHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKHGT 216 (287)
Q Consensus 178 V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~~ 216 (287)
|.++||++||.++.|+++....|..+.+++.++|+....
T Consensus 82 v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 82 VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 999999999976424565555588899999999987643
No 63
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.66 E-value=6.3e-16 Score=122.01 Aligned_cols=98 Identities=12% Similarity=0.320 Sum_probs=79.3
Q ss_pred EeCCHhHHHHHHHcCCCCeEEEEEEC-------CCChhHHHHHHHHHHHHHhCC-CeEEEEEEccC-------cHHHHHh
Q 023089 111 EIQSAQELVDALRNGGDRLVILDFYS-------PGCGGCKSLHPKICQLAELNP-NAIFLKVNYEE-------LKTMCHS 175 (287)
Q Consensus 111 ~i~s~~~f~~~i~~~~~k~vlV~Fya-------pWC~~Ck~l~p~~~~la~~~~-~v~~~~vd~~~-------~~~l~~~ 175 (287)
.+.+.++|.+.+....+++++|+||| +||++|+.+.|.+++++++++ ++.|++||+++ +.++..+
T Consensus 5 ~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 5 AVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred cccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhc
Confidence 45577889888865557899999999 999999999999999999998 69999999976 4588999
Q ss_pred CCCC-cccEEEEEECCCceEEEEecCCCCHHHHHHHH
Q 023089 176 LHIH-VLPFFKFYRGSEGHLCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 176 ~~V~-~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i 211 (287)
|+|. ++||+++|++|+ +++.... .+.+.+..|+
T Consensus 85 ~~I~~~iPT~~~~~~~~-~l~~~~c--~~~~~~~~~~ 118 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQ-RLVEDEC--LQADLVEMFF 118 (119)
T ss_pred cCcccCCCEEEEEcCCc-eecchhh--cCHHHHHHhh
Confidence 9999 999999997753 5555432 3444554443
No 64
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.61 E-value=6.9e-15 Score=112.64 Aligned_cols=88 Identities=13% Similarity=0.233 Sum_probs=77.5
Q ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHHHhCCCC--cccEEEEEECCCceEEEEecCCCC
Q 023089 127 DRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMCHSLHIH--VLPFFKFYRGSEGHLCSFSCTNAT 203 (287)
Q Consensus 127 ~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~~~~~V~--~~PTi~~f~~g~g~~~~~~~g~~~ 203 (287)
++++++.||++||++|+.+.|.++++|+++.+ +.|+.||+++++.+++.|+|. ++||++++++.+++...+..+..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 68999999999999999999999999999965 999999999999999999999 999999998844444445534558
Q ss_pred HHHHHHHHHHh
Q 023089 204 IKKFKDALAKH 214 (287)
Q Consensus 204 ~~~l~~~i~~~ 214 (287)
.+.|.+||++.
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 99999999864
No 65
>PTZ00062 glutaredoxin; Provisional
Probab=99.60 E-value=1.2e-14 Score=125.16 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=78.6
Q ss_pred CCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEECCCc
Q 023089 113 QSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEG 192 (287)
Q Consensus 113 ~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g 192 (287)
.+.+++.+.+.. +.+.++++|||+||++|+.|.|.+++|+++|+++.|++||.+ |+|.++||++||++|+
T Consensus 4 ~~~ee~~~~i~~-~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~- 73 (204)
T PTZ00062 4 IKKEEKDKLIES-NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQ- 73 (204)
T ss_pred CCHHHHHHHHhc-CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCE-
Confidence 367888887732 347899999999999999999999999999999999999987 9999999999999864
Q ss_pred eEEEEecCCCCHHHHHHHHHHhcC
Q 023089 193 HLCSFSCTNATIKKFKDALAKHGT 216 (287)
Q Consensus 193 ~~~~~~~g~~~~~~l~~~i~~~~~ 216 (287)
.+... .+.++.++..++.++..
T Consensus 74 -~i~r~-~G~~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 74 -LINSL-EGCNTSTLVSFIRGWAQ 95 (204)
T ss_pred -EEeee-eCCCHHHHHHHHHHHcC
Confidence 44444 46679999999998855
No 66
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.59 E-value=4.2e-15 Score=131.52 Aligned_cols=99 Identities=20% Similarity=0.380 Sum_probs=85.8
Q ss_pred hHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHh----CCC--eEEEEEEccCcHHHHHhCCCCcccEEEEEEC
Q 023089 116 QELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAEL----NPN--AIFLKVNYEELKTMCHSLHIHVLPFFKFYRG 189 (287)
Q Consensus 116 ~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~----~~~--v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~ 189 (287)
++++..+ ++...|+|.|||+||+..+.+.|.|++.|+. +|+ +.+++|||+++..++.+|.|..|||+.+|++
T Consensus 4 ~N~~~il--~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrn 81 (375)
T KOG0912|consen 4 ENIDSIL--DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRN 81 (375)
T ss_pred ccHHHhh--ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeec
Confidence 4566666 5689999999999999999999999998866 563 9999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCHHHHHHHHHHhcCC
Q 023089 190 SEGHLCSFSCTNATIKKFKDALAKHGTD 217 (287)
Q Consensus 190 g~g~~~~~~~g~~~~~~l~~~i~~~~~~ 217 (287)
|.----.|. |.|+.+.|.+||++....
T Consensus 82 G~~~~rEYR-g~RsVeaL~efi~kq~s~ 108 (375)
T KOG0912|consen 82 GEMMKREYR-GQRSVEALIEFIEKQLSD 108 (375)
T ss_pred cchhhhhhc-cchhHHHHHHHHHHHhcc
Confidence 762223577 999999999999998653
No 67
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.55 E-value=5.3e-14 Score=103.19 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=68.8
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHHhCC-CeEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHH
Q 023089 130 VILDFYSPGCGGCKSLHPKICQLAELNP-NAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFK 208 (287)
Q Consensus 130 vlV~FyapWC~~Ck~l~p~~~~la~~~~-~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~ 208 (287)
.+..||++||++|+.+.|.++++++.++ ++.++.||++++++++++|++.++||+++ +| + ..+. |..+.++|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g--~-~~~~-G~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NG--D-VEFI-GAPTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CC--E-EEEe-cCCCHHHHH
Confidence 3678999999999999999999999875 48999999999999999999999999986 54 3 3555 888999999
Q ss_pred HHHHHh
Q 023089 209 DALAKH 214 (287)
Q Consensus 209 ~~i~~~ 214 (287)
++|++.
T Consensus 76 ~~l~~~ 81 (82)
T TIGR00411 76 EAIKKR 81 (82)
T ss_pred HHHHhh
Confidence 998764
No 68
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.54 E-value=5.2e-14 Score=122.65 Aligned_cols=88 Identities=15% Similarity=0.208 Sum_probs=74.4
Q ss_pred CCCeEEEEEEC---CCChhHHHHHHHHHHHHHhCCCe--EEEEEEccCcHHHHHhCCCCcccEEEEEECCCceE-EEEec
Q 023089 126 GDRLVILDFYS---PGCGGCKSLHPKICQLAELNPNA--IFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHL-CSFSC 199 (287)
Q Consensus 126 ~~k~vlV~Fya---pWC~~Ck~l~p~~~~la~~~~~v--~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~-~~~~~ 199 (287)
.+...++.|++ +||++|+.+.|.++++++.++++ .++++|.+++++++++|+|.++||+++|++|+ .. ..+.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~-~~~~~~~- 95 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK-DGGIRYT- 95 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCe-eeEEEEe-
Confidence 34555667888 99999999999999999999764 56777777999999999999999999999875 33 4666
Q ss_pred CCCCHHHHHHHHHHhc
Q 023089 200 TNATIKKFKDALAKHG 215 (287)
Q Consensus 200 g~~~~~~l~~~i~~~~ 215 (287)
|..+.+++.+||+...
T Consensus 96 G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 96 GIPAGYEFAALIEDIV 111 (215)
T ss_pred ecCCHHHHHHHHHHHH
Confidence 8888899999999874
No 69
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=5.7e-14 Score=132.53 Aligned_cols=100 Identities=25% Similarity=0.420 Sum_probs=88.4
Q ss_pred hHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceE
Q 023089 116 QELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHL 194 (287)
Q Consensus 116 ~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~ 194 (287)
..|...+. ..+++++|+||+|||+||+.+.|.|++++..+.+ +.++.|||+++.++|++|+|+++||+.+|.+| .++
T Consensus 37 ~~~~~~~~-~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~-~~~ 114 (383)
T KOG0191|consen 37 DSFFDFLL-KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG-KKP 114 (383)
T ss_pred cccHHHhh-ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC-Cce
Confidence 44444444 4789999999999999999999999999999887 99999999999999999999999999999987 578
Q ss_pred EEEecCCCCHHHHHHHHHHhcCCC
Q 023089 195 CSFSCTNATIKKFKDALAKHGTDR 218 (287)
Q Consensus 195 ~~~~~g~~~~~~l~~~i~~~~~~~ 218 (287)
+.+. |.++.+.+.+|+.......
T Consensus 115 ~~~~-~~~~~~~~~~~~~~~~~~~ 137 (383)
T KOG0191|consen 115 IDYS-GPRNAESLAEFLIKELEPS 137 (383)
T ss_pred eecc-CcccHHHHHHHHHHhhccc
Confidence 9998 8999999999998875543
No 70
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.51 E-value=2.7e-14 Score=112.79 Aligned_cols=89 Identities=21% Similarity=0.335 Sum_probs=65.0
Q ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHHHhC-CCeEEEEEEccCcH-HHHHhCCCCc--ccEEEEEE-CCC--ceEEEE
Q 023089 125 GGDRLVILDFYSPGCGGCKSLHPKICQLAELN-PNAIFLKVNYEELK-TMCHSLHIHV--LPFFKFYR-GSE--GHLCSF 197 (287)
Q Consensus 125 ~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~-~~v~~~~vd~~~~~-~l~~~~~V~~--~PTi~~f~-~g~--g~~~~~ 197 (287)
.+++++||+|||+||++|+.+.|.+.+..+.. .+..|+.||++.++ ....+|++.+ +||++||. +|+ ++.+..
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~~ 96 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIINK 96 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhccC
Confidence 57899999999999999999999999876653 23455666666543 3457899987 99999995 654 223344
Q ss_pred ecCCCCHHHHHHHHHHh
Q 023089 198 SCTNATIKKFKDALAKH 214 (287)
Q Consensus 198 ~~g~~~~~~l~~~i~~~ 214 (287)
. |..+.+.+..+|...
T Consensus 97 ~-~~~~~~~f~~~~~~~ 112 (117)
T cd02959 97 K-GNPNYKYFYSSAAQV 112 (117)
T ss_pred C-CCccccccCCCHHHH
Confidence 4 777777777666653
No 71
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.51 E-value=1.4e-13 Score=135.75 Aligned_cols=106 Identities=20% Similarity=0.315 Sum_probs=85.8
Q ss_pred CeEEeCCHhHHHHHHH--cCCCCeEEEEEECCCChhHHHHHHHH---HHHHHhCCCeEEEEEEccC----cHHHHHhCCC
Q 023089 108 NMIEIQSAQELVDALR--NGGDRLVILDFYSPGCGGCKSLHPKI---CQLAELNPNAIFLKVNYEE----LKTMCHSLHI 178 (287)
Q Consensus 108 ~v~~i~s~~~f~~~i~--~~~~k~vlV~FyapWC~~Ck~l~p~~---~~la~~~~~v~~~~vd~~~----~~~l~~~~~V 178 (287)
...++.+.+++++.+. ..++|+|+|+|||+||++|+.++|.. +++.+.++++.++++|+++ +.+++++|+|
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v 532 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV 532 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC
Confidence 3467778888888774 24579999999999999999999975 7788888889999999985 3678899999
Q ss_pred CcccEEEEEE-CCCce-EEEEecCCCCHHHHHHHHHHh
Q 023089 179 HVLPFFKFYR-GSEGH-LCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 179 ~~~PTi~~f~-~g~g~-~~~~~~g~~~~~~l~~~i~~~ 214 (287)
.++||+++|+ +|+.. ..++. |..+.+++.+++++.
T Consensus 533 ~g~Pt~~~~~~~G~~i~~~r~~-G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 533 LGLPTILFFDAQGQEIPDARVT-GFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCEEEEECCCCCCccccccc-CCCCHHHHHHHHHHh
Confidence 9999999996 44311 13344 889999999999875
No 72
>PHA02125 thioredoxin-like protein
Probab=99.51 E-value=1.6e-13 Score=99.75 Aligned_cols=72 Identities=22% Similarity=0.420 Sum_probs=57.3
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHH
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDA 210 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~ 210 (287)
++.|||+||++|+.+.|.++++. +.+++||++++++++++|+|.++||++ +|+ .+-.+.+..++..+|++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~-~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTS-TLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCE-EEEEEeCCCCcHHHHHHH
Confidence 78999999999999999998764 468999999999999999999999987 432 333555334566777665
Q ss_pred H
Q 023089 211 L 211 (287)
Q Consensus 211 i 211 (287)
|
T Consensus 73 ~ 73 (75)
T PHA02125 73 L 73 (75)
T ss_pred h
Confidence 4
No 73
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.43 E-value=1.9e-12 Score=116.54 Aligned_cols=90 Identities=11% Similarity=0.186 Sum_probs=73.9
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccC-----------cHHHHHhCCCCcccEEEEEECCCceE
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE-----------LKTMCHSLHIHVLPFFKFYRGSEGHL 194 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~-----------~~~l~~~~~V~~~PTi~~f~~g~g~~ 194 (287)
.++++||+|||+||++|+.+.|.+++++++|. +.++.|+++. +..++++|+|.++||+++++++.+++
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 57899999999999999999999999999985 6666666654 35688999999999999998633455
Q ss_pred EEEecCCCCHHHHHHHHHHhcC
Q 023089 195 CSFSCTNATIKKFKDALAKHGT 216 (287)
Q Consensus 195 ~~~~~g~~~~~~l~~~i~~~~~ 216 (287)
.....|..+.++|.+.|.....
T Consensus 244 ~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 244 TPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEeCCCCHHHHHHHHHHHhc
Confidence 5444488999999999887644
No 74
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.42 E-value=2.3e-12 Score=106.39 Aligned_cols=88 Identities=9% Similarity=0.128 Sum_probs=65.9
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCc------------HHHH-HhC---CCCcccEEEEEEC
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEEL------------KTMC-HSL---HIHVLPFFKFYRG 189 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~------------~~l~-~~~---~V~~~PTi~~f~~ 189 (287)
.++..+|+|||+||++|++..|.++++++++ ++.++.|+.+.. .... ..| +|.++||.+++..
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 4567799999999999999999999999998 456666665532 2333 345 8899999999965
Q ss_pred CCceEEEEecCCCCHHHHHHHHHHh
Q 023089 190 SEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 190 g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
..+.+.....|..+.+++.+.|++.
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHHh
Confidence 3233443334899999999888764
No 75
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.42 E-value=1.6e-12 Score=94.66 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=57.2
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceEEEEecCC-CCHHHHH
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTN-ATIKKFK 208 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~-~~~~~l~ 208 (287)
-|.||++||++|+.+.|.+++++++++. +.+++|| + .+.+.+|++.++||+++ +| +.+ +. |. .+.+++.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~-~~~a~~~~v~~vPti~i--~G--~~~-~~-G~~~~~~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--D-MNEILEAGVTATPGVAV--DG--ELV-IM-GKIPSKEEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C-HHHHHHcCCCcCCEEEE--CC--EEE-EE-eccCCHHHHH
Confidence 3889999999999999999999999865 7888777 2 33478899999999999 64 444 54 53 4557777
Q ss_pred HHH
Q 023089 209 DAL 211 (287)
Q Consensus 209 ~~i 211 (287)
+++
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 765
No 76
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.39 E-value=1.2e-12 Score=92.52 Aligned_cols=56 Identities=23% Similarity=0.355 Sum_probs=53.1
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEE
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKF 186 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~ 186 (287)
++.||++||++|+++.+.++++++.++++.+..+|++++++++++|++.++||+++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 67899999999999999999999988889999999999999999999999999865
No 77
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.39 E-value=3.1e-12 Score=101.88 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=60.7
Q ss_pred HhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHH-H--HHHHHh-CCCeEEEEEEccCcHHHHHh--------CCCCccc
Q 023089 115 AQELVDALRNGGDRLVILDFYSPGCGGCKSLHPK-I--CQLAEL-NPNAIFLKVNYEELKTMCHS--------LHIHVLP 182 (287)
Q Consensus 115 ~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~-~--~~la~~-~~~v~~~~vd~~~~~~l~~~--------~~V~~~P 182 (287)
.+.+.... .++|++||+|||+||++|+.|.+. + .++++. +.++.++++|.+++++++++ |++.++|
T Consensus 5 ~eal~~Ak--~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 5 EEAFEKAR--REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred HHHHHHHH--HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 34555544 579999999999999999999874 3 356555 45789999999998877653 5899999
Q ss_pred EEEEEECCCceEEE
Q 023089 183 FFKFYRGSEGHLCS 196 (287)
Q Consensus 183 Ti~~f~~g~g~~~~ 196 (287)
|++|+.. +|+++.
T Consensus 83 t~vfl~~-~G~~~~ 95 (124)
T cd02955 83 LNVFLTP-DLKPFF 95 (124)
T ss_pred EEEEECC-CCCEEe
Confidence 9999955 355553
No 78
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=1.7e-13 Score=130.44 Aligned_cols=82 Identities=17% Similarity=0.431 Sum_probs=71.0
Q ss_pred CCeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC---C-eEEEEEEcc--CcHHHHHhCCCCc
Q 023089 107 PNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP---N-AIFLKVNYE--ELKTMCHSLHIHV 180 (287)
Q Consensus 107 ~~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~---~-v~~~~vd~~--~~~~l~~~~~V~~ 180 (287)
.++.++ +.++|...+.. +.+..+|+||++|||||++++|+|+++++... . +.++.|||. .|..+|++|+|.+
T Consensus 39 D~ii~L-d~~tf~~~v~~-~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 39 DPIIEL-DVDTFNAAVFG-SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred CCeEEe-ehhhhHHHhcc-cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 566777 57889888754 45789999999999999999999999998853 3 899999995 5889999999999
Q ss_pred ccEEEEEECC
Q 023089 181 LPFFKFYRGS 190 (287)
Q Consensus 181 ~PTi~~f~~g 190 (287)
|||+.+|+.+
T Consensus 117 ~Ptlryf~~~ 126 (606)
T KOG1731|consen 117 YPTLRYFPPD 126 (606)
T ss_pred CceeeecCCc
Confidence 9999999765
No 79
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.39 E-value=1.6e-12 Score=100.98 Aligned_cols=86 Identities=17% Similarity=0.285 Sum_probs=62.0
Q ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHH---HHhCC-CeEEEEEEccCc--------------------HHHHHhCCCCc
Q 023089 125 GGDRLVILDFYSPGCGGCKSLHPKICQL---AELNP-NAIFLKVNYEEL--------------------KTMCHSLHIHV 180 (287)
Q Consensus 125 ~~~k~vlV~FyapWC~~Ck~l~p~~~~l---a~~~~-~v~~~~vd~~~~--------------------~~l~~~~~V~~ 180 (287)
.++++++|.||+|||++|+++.+.+.+. ...+. ++.++.++++.. .+++++|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 4689999999999999999999999864 33332 578888887643 35889999999
Q ss_pred ccEEEEEECCCceEEEEecCCCCHHHHHHHH
Q 023089 181 LPFFKFYRGSEGHLCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 181 ~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i 211 (287)
+||++++. ++|+++....|..+.++|.++|
T Consensus 83 tPt~~~~d-~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLD-KDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECT-TTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEc-CCCCEEEEecCCCCHHHHHhhC
Confidence 99999994 3456554344999999998875
No 80
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.36 E-value=5.3e-12 Score=122.21 Aligned_cols=89 Identities=17% Similarity=0.215 Sum_probs=73.0
Q ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEE----------------------------EccCcHHHHH
Q 023089 125 GGDRLVILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKV----------------------------NYEELKTMCH 174 (287)
Q Consensus 125 ~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~v----------------------------d~~~~~~l~~ 174 (287)
+.+++|||+|||+||++|+.+.|.++++++++. ++.++.| +++.+..+++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 368999999999999999999999999999875 5666544 3345667889
Q ss_pred hCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHHHHh
Q 023089 175 SLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 175 ~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
.|+|.++||++++.. +|+++....|..+.++|.++|+.-
T Consensus 134 ~fgV~giPTt~IIDk-dGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 134 SLNISVYPSWAIIGK-DGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred HcCCCCcCeEEEEcC-CCeEEEEEeCCCCHHHHHHHHHHh
Confidence 999999999987743 356776666999999999999843
No 81
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.35 E-value=1.2e-11 Score=105.37 Aligned_cols=87 Identities=15% Similarity=0.247 Sum_probs=69.3
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcH-----------------------HHHHhCCCCccc
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK-----------------------TMCHSLHIHVLP 182 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~-----------------------~l~~~~~V~~~P 182 (287)
.+++++|+|||+||++|++..|.+.++.++ ++.++.|+.++.+ .++..|+|.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 589999999999999999999999999764 6778888764432 244578999999
Q ss_pred EEEEEECCCceEEEEecCCCCHHHHHHHHHHhc
Q 023089 183 FFKFYRGSEGHLCSFSCTNATIKKFKDALAKHG 215 (287)
Q Consensus 183 Ti~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~ 215 (287)
+.+++.. +|++.....|..+.+++.+.|+...
T Consensus 145 ~t~vid~-~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 145 ETFLIDG-NGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred eEEEECC-CceEEEEEecCCCHHHHHHHHHHHH
Confidence 8888843 3667666668899999988888764
No 82
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.32 E-value=1.6e-11 Score=103.30 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=68.3
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEc-----------------------cCcHHHHHhCCCCccc
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNY-----------------------EELKTMCHSLHIHVLP 182 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~-----------------------~~~~~l~~~~~V~~~P 182 (287)
.+++++|+||++||++|+++.|.++++.++ ++.++.|+. +.+..+.+.|++.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 579999999999999999999999999875 456666654 2333567789999999
Q ss_pred EEEEEECCCceEEEEecCCCCHHHHHHHHHHhc
Q 023089 183 FFKFYRGSEGHLCSFSCTNATIKKFKDALAKHG 215 (287)
Q Consensus 183 Ti~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~ 215 (287)
+.+++.. +|+++....|..+.+++.++|+++.
T Consensus 140 ~~~~id~-~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 140 ETFLVDG-NGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred eEEEEcC-CceEEEEEeccCCHHHHHHHHHHHh
Confidence 8777743 3566655558899999999998874
No 83
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.32 E-value=1.6e-11 Score=97.71 Aligned_cols=80 Identities=18% Similarity=0.282 Sum_probs=61.8
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEc-----------------------cCcHHHHHhCCCCccc
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNY-----------------------EELKTMCHSLHIHVLP 182 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~-----------------------~~~~~l~~~~~V~~~P 182 (287)
.+++++|+||++||++|+.+.|.++++.+++ ++.++.|+. +.+..+++.|++.++|
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence 4789999999999999999999999999887 466666653 4455678889999999
Q ss_pred EEEEEECCCceEEEEecCCCCHHHH
Q 023089 183 FFKFYRGSEGHLCSFSCTNATIKKF 207 (287)
Q Consensus 183 Ti~~f~~g~g~~~~~~~g~~~~~~l 207 (287)
+.+++.. +|+++....|..+.+.|
T Consensus 103 ~~~~ld~-~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 103 ETFLIDG-DGIIRYKHVGPLTPEVW 126 (127)
T ss_pred eEEEECC-CceEEEEEeccCChHhc
Confidence 7777732 35666544477776644
No 84
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.31 E-value=1.1e-11 Score=101.44 Aligned_cols=72 Identities=14% Similarity=0.260 Sum_probs=57.9
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhC---------CCeEEEEEEccCc-------------------------HH
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELN---------PNAIFLKVNYEEL-------------------------KT 171 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~---------~~v~~~~vd~~~~-------------------------~~ 171 (287)
.+++++|+|||+||++|+++.|.+.++.+++ .++.++.|+.+++ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 5799999999999999999999999987643 2478888876632 14
Q ss_pred HHHhCCCCcccEEEEEECCCceEEEEe
Q 023089 172 MCHSLHIHVLPFFKFYRGSEGHLCSFS 198 (287)
Q Consensus 172 l~~~~~V~~~PTi~~f~~g~g~~~~~~ 198 (287)
++++|+|.++||++++.. +|+++...
T Consensus 104 l~~~y~v~~iPt~vlId~-~G~Vv~~~ 129 (146)
T cd03008 104 LEAQFSVEELPTVVVLKP-DGDVLAAN 129 (146)
T ss_pred HHHHcCCCCCCEEEEECC-CCcEEeeC
Confidence 677899999999999954 57787664
No 85
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.29 E-value=1.3e-11 Score=99.19 Aligned_cols=72 Identities=17% Similarity=0.317 Sum_probs=57.2
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCC----CeEEEEEEccCc-------------------------HHHHHhC
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNP----NAIFLKVNYEEL-------------------------KTMCHSL 176 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~----~v~~~~vd~~~~-------------------------~~l~~~~ 176 (287)
.++.+||+||++||++|+.+.|.++++++++. ++.++.|+++.. ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 57999999999999999999999999887753 477777776543 2456679
Q ss_pred CCCcccEEEEEECCCceEEEEe
Q 023089 177 HIHVLPFFKFYRGSEGHLCSFS 198 (287)
Q Consensus 177 ~V~~~PTi~~f~~g~g~~~~~~ 198 (287)
+|.++||++++.. +|+++...
T Consensus 96 ~v~~iPt~~lid~-~G~iv~~~ 116 (132)
T cd02964 96 KVEGIPTLVVLKP-DGDVVTTN 116 (132)
T ss_pred CCCCCCEEEEECC-CCCEEchh
Confidence 9999999999954 35666544
No 86
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.28 E-value=6.2e-11 Score=89.01 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=65.3
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHH
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIK 205 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~ 205 (287)
.+..-+..|+++||++|..+.+.++++++.++++.+..+|.++.++++.+|+|.++||+++ +| +.+. . |..+.+
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG--~~~~-~-G~~~~~ 84 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NG--ELFG-F-GRMTLE 84 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CC--EEEE-e-CCCCHH
Confidence 4566788899999999999999999999999999999999999999999999999999964 64 4433 3 666666
Q ss_pred HHH
Q 023089 206 KFK 208 (287)
Q Consensus 206 ~l~ 208 (287)
++.
T Consensus 85 e~~ 87 (89)
T cd03026 85 EIL 87 (89)
T ss_pred HHh
Confidence 654
No 87
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.28 E-value=2.1e-11 Score=97.54 Aligned_cols=72 Identities=17% Similarity=0.346 Sum_probs=56.9
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCC----CeEEEEEEccCc------------------------HHHHHhCC
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNP----NAIFLKVNYEEL------------------------KTMCHSLH 177 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~----~v~~~~vd~~~~------------------------~~l~~~~~ 177 (287)
.++++||+||++||++|+.+.|.+.++.+++. ++.++.|+++.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 47899999999999999999999998887752 566776666533 35778899
Q ss_pred CCcccEEEEEECCCceEEEEe
Q 023089 178 IHVLPFFKFYRGSEGHLCSFS 198 (287)
Q Consensus 178 V~~~PTi~~f~~g~g~~~~~~ 198 (287)
|.++||++++.. +|+++...
T Consensus 97 v~~~P~~~lid~-~G~i~~~~ 116 (131)
T cd03009 97 IEGIPTLIILDA-DGEVVTTD 116 (131)
T ss_pred CCCCCEEEEECC-CCCEEccc
Confidence 999999999953 35665543
No 88
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.27 E-value=5.8e-11 Score=99.24 Aligned_cols=88 Identities=18% Similarity=0.284 Sum_probs=73.7
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC--eEEEEEEccC----------------------cHHHHHhCCCCcc
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPN--AIFLKVNYEE----------------------LKTMCHSLHIHVL 181 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~--v~~~~vd~~~----------------------~~~l~~~~~V~~~ 181 (287)
.+++++|+||++||++|+...|.+.++++++++ +.++.|+++. +..+++.|+|.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 468999999999999999999999999999864 8888888753 4567899999999
Q ss_pred cEEEEEECCCceEEEEecCCCCHHHHHHHHHHh
Q 023089 182 PFFKFYRGSEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 182 PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
|+++++.. +|+++....|..+.+++.+++++.
T Consensus 140 P~~~lid~-~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDK-DGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECC-CCcEEEEEeCCCCHHHHHHHHHHh
Confidence 99999954 356765545899999999998854
No 89
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.27 E-value=3.7e-11 Score=90.57 Aligned_cols=63 Identities=22% Similarity=0.367 Sum_probs=52.8
Q ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHhCC---CeEEEEEEccCc-------------------------HHHHHhCCC
Q 023089 127 DRLVILDFYSPGCGGCKSLHPKICQLAELNP---NAIFLKVNYEEL-------------------------KTMCHSLHI 178 (287)
Q Consensus 127 ~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~---~v~~~~vd~~~~-------------------------~~l~~~~~V 178 (287)
+|+++|+|||+||++|+...|.+.++.++++ ++.++.|..++. ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5899999999999999999999999999998 588888887643 247788999
Q ss_pred CcccEEEEEEC
Q 023089 179 HVLPFFKFYRG 189 (287)
Q Consensus 179 ~~~PTi~~f~~ 189 (287)
.++|+++++..
T Consensus 81 ~~iP~~~lld~ 91 (95)
T PF13905_consen 81 NGIPTLVLLDP 91 (95)
T ss_dssp TSSSEEEEEET
T ss_pred CcCCEEEEECC
Confidence 99999999965
No 90
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.19 E-value=1.5e-10 Score=88.53 Aligned_cols=71 Identities=17% Similarity=0.349 Sum_probs=61.8
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhC--CCeEEEEEEccCc-----------------------HHHHHhCCCCc
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELN--PNAIFLKVNYEEL-----------------------KTMCHSLHIHV 180 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~--~~v~~~~vd~~~~-----------------------~~l~~~~~V~~ 180 (287)
.+++++|.||++||++|+...+.+.++.+++ +++.++.|+++.+ ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 3789999999999999999999999999998 5799999999885 67889999999
Q ss_pred ccEEEEEECCCceEEEE
Q 023089 181 LPFFKFYRGSEGHLCSF 197 (287)
Q Consensus 181 ~PTi~~f~~g~g~~~~~ 197 (287)
+|+++++.. +|+++..
T Consensus 98 ~P~~~l~d~-~g~v~~~ 113 (116)
T cd02966 98 LPTTFLIDR-DGRIRAR 113 (116)
T ss_pred cceEEEECC-CCcEEEE
Confidence 999999953 3555543
No 91
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.18 E-value=1.7e-10 Score=90.99 Aligned_cols=82 Identities=15% Similarity=0.236 Sum_probs=62.4
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEE---------------------ccCcHHHHHhCCCCcccEE
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVN---------------------YEELKTMCHSLHIHVLPFF 184 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd---------------------~~~~~~l~~~~~V~~~PTi 184 (287)
.+++++|.||++||++|+.+.|.+.++++++. +..+.+| .+.+..++++|+|.++||+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~ 97 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAI 97 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEE
Confidence 45899999999999999999999999998853 2222222 1345578999999999999
Q ss_pred EEEECCCceEEEEecCCCCHHHHHHH
Q 023089 185 KFYRGSEGHLCSFSCTNATIKKFKDA 210 (287)
Q Consensus 185 ~~f~~g~g~~~~~~~g~~~~~~l~~~ 210 (287)
+++.++ | +.....|..+.+.|.+-
T Consensus 98 ~vid~~-g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 98 VIVDPG-G-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEcCC-C-eEEEEeccCCHHHHHhh
Confidence 999765 4 44333388888888653
No 92
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.16 E-value=1.3e-10 Score=112.16 Aligned_cols=103 Identities=20% Similarity=0.312 Sum_probs=82.8
Q ss_pred EeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHH---HHHHHhCCCeEEEEEEccCc----HHHHHhCCCCcccE
Q 023089 111 EIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKI---CQLAELNPNAIFLKVNYEEL----KTMCHSLHIHVLPF 183 (287)
Q Consensus 111 ~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~---~~la~~~~~v~~~~vd~~~~----~~l~~~~~V~~~PT 183 (287)
.+.+..++++.+.++.+|+|+|+|||+||-.||.+++.. .+.+.+.++++..++|.++| .++-++|++-+.|+
T Consensus 458 ~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~ 537 (569)
T COG4232 458 PISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPT 537 (569)
T ss_pred ccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCE
Confidence 444555888888776677999999999999999999876 45666678999999999875 35668999999999
Q ss_pred EEEEECCCceEEEEecCCCCHHHHHHHHHHh
Q 023089 184 FKFYRGSEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 184 i~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
+++|..+..++.... |..+.+.+.+++++.
T Consensus 538 ~~ff~~~g~e~~~l~-gf~~a~~~~~~l~~~ 567 (569)
T COG4232 538 YLFFGPQGSEPEILT-GFLTADAFLEHLERA 567 (569)
T ss_pred EEEECCCCCcCcCCc-ceecHHHHHHHHHHh
Confidence 999974333444444 889999999999875
No 93
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.15 E-value=2.9e-10 Score=119.46 Aligned_cols=90 Identities=19% Similarity=0.278 Sum_probs=72.6
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC--eEEEEEEc---------------------------cCcHHHHHhC
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPN--AIFLKVNY---------------------------EELKTMCHSL 176 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~--v~~~~vd~---------------------------~~~~~l~~~~ 176 (287)
.++++||+|||+||++|+...|.++++.++|++ +.++.|.. +.+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 589999999999999999999999999999864 77777742 2234577889
Q ss_pred CCCcccEEEEEECCCceEEEEecCCCCHHHHHHHHHHhcC
Q 023089 177 HIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKHGT 216 (287)
Q Consensus 177 ~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~~ 216 (287)
+|.++||++++.. +|+++....|....+++.++|+....
T Consensus 499 ~V~~iPt~ilid~-~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSWPTFAVVSP-NGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccceEEEECC-CCeEEEEEecccCHHHHHHHHHHHHH
Confidence 9999999999942 35666555588889999999887643
No 94
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.14 E-value=7.7e-10 Score=86.63 Aligned_cols=91 Identities=14% Similarity=0.155 Sum_probs=72.0
Q ss_pred CCCCeEEEEEECCCChhHHHHHHH-H--HHHHHhCC-CeEEEEEEcc--CcHHHHHhCCCCcccEEEEEECCCceEEEEe
Q 023089 125 GGDRLVILDFYSPGCGGCKSLHPK-I--CQLAELNP-NAIFLKVNYE--ELKTMCHSLHIHVLPFFKFYRGSEGHLCSFS 198 (287)
Q Consensus 125 ~~~k~vlV~FyapWC~~Ck~l~p~-~--~~la~~~~-~v~~~~vd~~--~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~ 198 (287)
.++|+++|+|+++||++|+.|... | +++.+... +..+.++|++ +...+++.|++.++|+++++...+|+++...
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~ 94 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVW 94 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEE
Confidence 578999999999999999999764 3 34444432 5788888887 4667899999999999999965235666665
Q ss_pred cCCCCHHHHHHHHHHhc
Q 023089 199 CTNATIKKFKDALAKHG 215 (287)
Q Consensus 199 ~g~~~~~~l~~~i~~~~ 215 (287)
.|..++++|...|++..
T Consensus 95 ~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 95 SGNITPEDLLSQLIEFL 111 (114)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 69999999999998763
No 95
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.12 E-value=8.3e-10 Score=93.11 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=65.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCc-------------HHHHHhCCC--CcccEEEEEECCCceEE
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEEL-------------KTMCHSLHI--HVLPFFKFYRGSEGHLC 195 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~-------------~~l~~~~~V--~~~PTi~~f~~g~g~~~ 195 (287)
+|.||++||++|++..|.+++++++| ++.++.|+.+.. ..+...|++ .++||.+++.. +|++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~-~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNV-NTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeC-CCcEE
Confidence 77899999999999999999999998 567766766532 235668885 69999999954 35553
Q ss_pred -EEecCCCCHHHHHHHHHHhcC
Q 023089 196 -SFSCTNATIKKFKDALAKHGT 216 (287)
Q Consensus 196 -~~~~g~~~~~~l~~~i~~~~~ 216 (287)
....|..+.+++.+.|++...
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHh
Confidence 333399999999998888754
No 96
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.11 E-value=1.8e-09 Score=86.49 Aligned_cols=98 Identities=10% Similarity=-0.007 Sum_probs=79.2
Q ss_pred hHHHHHHHcCCCCeEEEEEECC--CChhHHHHHHHHHHHHHhCC-C-eEEEEEEccCcHHHHHhCCCCcccEEEEEECCC
Q 023089 116 QELVDALRNGGDRLVILDFYSP--GCGGCKSLHPKICQLAELNP-N-AIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSE 191 (287)
Q Consensus 116 ~~f~~~i~~~~~k~vlV~Fyap--WC~~Ck~l~p~~~~la~~~~-~-v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~ 191 (287)
.++.+.+ ...+..+|.|-.+ -++-+-...-++++++++|+ + +++++||++++++++.+|+|.++||++||++|
T Consensus 25 ~~~~~~~--~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdG- 101 (132)
T PRK11509 25 SRLDDWL--TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGG- 101 (132)
T ss_pred ccHHHHH--hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECC-
Confidence 4555555 3445555555543 56778888899999999998 3 99999999999999999999999999999995
Q ss_pred ceEEEEecCCCCHHHHHHHHHHhcCC
Q 023089 192 GHLCSFSCTNATIKKFKDALAKHGTD 217 (287)
Q Consensus 192 g~~~~~~~g~~~~~~l~~~i~~~~~~ 217 (287)
+.+....|.++.+++.++|+++...
T Consensus 102 -k~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 102 -NYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred -EEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 4555555899999999999998654
No 97
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.04 E-value=1.8e-09 Score=85.85 Aligned_cols=74 Identities=15% Similarity=0.256 Sum_probs=58.0
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEcc---------------------------CcHHHHHhC
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYE---------------------------ELKTMCHSL 176 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~---------------------------~~~~l~~~~ 176 (287)
.+++++|+||++||++|++..|.++++.+++. ++.++.|+.+ ....+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 46899999999999999999999999999986 4777777541 122466779
Q ss_pred CCCcccEEEEEECCCceEEEEecC
Q 023089 177 HIHVLPFFKFYRGSEGHLCSFSCT 200 (287)
Q Consensus 177 ~V~~~PTi~~f~~g~g~~~~~~~g 200 (287)
++.++|+.+++.. +|+++....|
T Consensus 102 ~v~~~P~~~vid~-~G~v~~~~~G 124 (126)
T cd03012 102 GNQYWPALYLIDP-TGNVRHVHFG 124 (126)
T ss_pred CCCcCCeEEEECC-CCcEEEEEec
Confidence 9999999999943 3566654434
No 98
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.03 E-value=7.4e-10 Score=99.18 Aligned_cols=110 Identities=20% Similarity=0.374 Sum_probs=81.5
Q ss_pred CCeEEeCCHhHHHHHHHc-CCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEE
Q 023089 107 PNMIEIQSAQELVDALRN-GGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185 (287)
Q Consensus 107 ~~v~~i~s~~~f~~~i~~-~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~ 185 (287)
..|.+|.+.++|.+.+.. ..+..|||+||-+.++.|+.|...|..||.+|+.++|++|..+..+ +..+|.+..+||++
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtll 203 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTLL 203 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEEE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEEE
Confidence 467899888889888742 2346899999999999999999999999999999999999998876 67899999999999
Q ss_pred EEECCC--ceEEEE---ecCCCCHHHHHHHHHHhcCC
Q 023089 186 FYRGSE--GHLCSF---SCTNATIKKFKDALAKHGTD 217 (287)
Q Consensus 186 ~f~~g~--g~~~~~---~~g~~~~~~l~~~i~~~~~~ 217 (287)
+|++|+ ++++.+ .+...+..+|..||.+++..
T Consensus 204 vYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~l 240 (265)
T PF02114_consen 204 VYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGVL 240 (265)
T ss_dssp EEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTSS
T ss_pred EEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCCC
Confidence 999875 222222 12356788999999988653
No 99
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.03 E-value=5.1e-10 Score=87.05 Aligned_cols=63 Identities=24% Similarity=0.353 Sum_probs=45.5
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCC-CeEEEEEE---ccCcH-----------------HHHHhCCCCcccEE
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNP-NAIFLKVN---YEELK-----------------TMCHSLHIHVLPFF 184 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~-~v~~~~vd---~~~~~-----------------~l~~~~~V~~~PTi 184 (287)
.+++++|+||++||++|+.+.|.++++++.+. ++.++.+. .++.. ++.+.|++.++|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 37899999999999999999999999988874 46555552 11222 34455666667777
Q ss_pred EEEE
Q 023089 185 KFYR 188 (287)
Q Consensus 185 ~~f~ 188 (287)
+++.
T Consensus 100 ~vid 103 (114)
T cd02967 100 VLLD 103 (114)
T ss_pred EEEC
Confidence 6663
No 100
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.99 E-value=6.5e-09 Score=87.32 Aligned_cols=165 Identities=13% Similarity=0.161 Sum_probs=121.7
Q ss_pred cccCCCCCeeeeeeecCCCccccccccccccccCCceeeeccCCe--eeecCCCccccccccCCceeeeeehhhhhhhHH
Q 023089 20 FPSSKDKSIVGFCSSRAPPSQVRVLTSKSISKILPAFSIHFKGQS--LAVSDHKSLTLWHVKAPNKFSINAQASICVSRA 97 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~~~~~~~l~l~~~~~~~p~l~~~~~~~~--~ky~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~ 97 (287)
.+|+++++.+.|+.++.. ..++.+|++ .|++.+....+. ..|... .++.+.|.+|+
T Consensus 14 ~~A~~~~~~~~F~~~~~~-~~~~~~~~~-----~p~i~~~k~~~~~~~~y~~~----~~~~~~l~~fI------------ 71 (184)
T PF13848_consen 14 EAAEKLKGDYQFGVTFNE-ELAKKYGIK-----EPTIVVYKKFDEKPVVYDGD----KFTPEELKKFI------------ 71 (184)
T ss_dssp HHHHHHTTTSEEEEEE-H-HHHHHCTCS-----SSEEEEEECTTTSEEEESSS----TTSHHHHHHHH------------
T ss_pred HHHHhCcCCcEEEEEcHH-HHHHHhCCC-----CCcEEEeccCCCCceecccc----cCCHHHHHHHH------------
Confidence 789999999999999643 345567764 399986653222 344321 24555555554
Q ss_pred HHHHhhhCCCCeEEeCCHhHHHHHHHcCCCCe-EEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHHHh
Q 023089 98 MRWWEKTLKPNMIEIQSAQELVDALRNGGDRL-VILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMCHS 175 (287)
Q Consensus 98 ~~~~~~~~~~~v~~i~s~~~f~~~i~~~~~k~-vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~~~ 175 (287)
....-|.+.+++ .+++.... ..+++ +++.|+.........+...++++++++.+ +.|+.+|++..+.+++.
T Consensus 72 ----~~~~~P~v~~~t-~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~ 144 (184)
T PF13848_consen 72 ----KKNSFPLVPELT-PENFEKLF--SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKY 144 (184)
T ss_dssp ----HHHSSTSCEEES-TTHHHHHH--STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHH
T ss_pred ----HHhccccccccc-hhhHHHHh--cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHH
Confidence 566677888995 56776665 45555 88888877888999999999999999877 99999999999999999
Q ss_pred CCCC--cccEEEEEECCCceEEEEecCCCCHHHHHHHHHH
Q 023089 176 LHIH--VLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAK 213 (287)
Q Consensus 176 ~~V~--~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~ 213 (287)
+++. .+|+++++....++...+..+..+.+.+.+|+++
T Consensus 145 ~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 145 FGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred cCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 9998 9999999984344432212488999999999974
No 101
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.99 E-value=1.9e-09 Score=90.26 Aligned_cols=95 Identities=23% Similarity=0.424 Sum_probs=84.7
Q ss_pred HhhhCCCCeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCc
Q 023089 101 WEKTLKPNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHV 180 (287)
Q Consensus 101 ~~~~~~~~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~ 180 (287)
|.....+.+.+|.+..+|.+.+ .....|+++||-|.-..|+-|...++.||+.+.+.+|++||++..|-++.+++|+.
T Consensus 60 ~~~~GhG~y~ev~~Ekdf~~~~--~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkV 137 (211)
T KOG1672|consen 60 WLSKGHGEYEEVASEKDFFEEV--KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKV 137 (211)
T ss_pred HHHcCCceEEEeccHHHHHHHh--hcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeE
Confidence 5556677889999999999987 45788999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEECCC--ceEEEE
Q 023089 181 LPFFKFYRGSE--GHLCSF 197 (287)
Q Consensus 181 ~PTi~~f~~g~--g~~~~~ 197 (287)
+||+.+|++|. .++++|
T Consensus 138 LP~v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 138 LPTVALFKNGKTVDYVVGF 156 (211)
T ss_pred eeeEEEEEcCEEEEEEeeH
Confidence 99999999975 234444
No 102
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.99 E-value=4.2e-09 Score=85.60 Aligned_cols=77 Identities=14% Similarity=0.273 Sum_probs=61.4
Q ss_pred CCCeEEEEEECC-CChhHHHHHHHHHHHHHhC--CCeEEEEEEccCc---------------------HHHHHhCCCC--
Q 023089 126 GDRLVILDFYSP-GCGGCKSLHPKICQLAELN--PNAIFLKVNYEEL---------------------KTMCHSLHIH-- 179 (287)
Q Consensus 126 ~~k~vlV~Fyap-WC~~Ck~l~p~~~~la~~~--~~v~~~~vd~~~~---------------------~~l~~~~~V~-- 179 (287)
.+++++|.||++ ||++|+...|.+.++.+.| .++.++.|..+.. ..+.++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 589999999999 9999999999999998884 3477777765432 3578889988
Q ss_pred -------cccEEEEEECCCceEEEEecCCCC
Q 023089 180 -------VLPFFKFYRGSEGHLCSFSCTNAT 203 (287)
Q Consensus 180 -------~~PTi~~f~~g~g~~~~~~~g~~~ 203 (287)
++|+++++.. +|+++....|..+
T Consensus 107 ~~~~~~~~~P~~~lId~-~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDK-DGKVVYRHVGPDP 136 (146)
T ss_dssp CCTTTTSSSSEEEEEET-TSBEEEEEESSBT
T ss_pred cccccCCeecEEEEEEC-CCEEEEEEeCCCC
Confidence 9999999965 4677766556555
No 103
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.99 E-value=1.2e-09 Score=80.47 Aligned_cols=63 Identities=25% Similarity=0.451 Sum_probs=48.8
Q ss_pred CCCCeEEEEEECCCChhHHHHHHHH---HHHHH-hCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEE
Q 023089 125 GGDRLVILDFYSPGCGGCKSLHPKI---CQLAE-LNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYR 188 (287)
Q Consensus 125 ~~~k~vlV~FyapWC~~Ck~l~p~~---~~la~-~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~ 188 (287)
.++|+++|+|+|+||++|+.|...+ .++.+ ...++.++++|.+....... +...++|+++|+.
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ld 81 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLD 81 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHH-HHHCSSSEEEEEE
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHH-hCCccCCEEEEeC
Confidence 4799999999999999999999776 44444 23568999999987655332 2227799999985
No 104
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.98 E-value=3.5e-09 Score=91.19 Aligned_cols=90 Identities=9% Similarity=0.132 Sum_probs=66.1
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEcc-------C----cHHHHHhCCC--------------
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYE-------E----LKTMCHSLHI-------------- 178 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~-------~----~~~l~~~~~V-------------- 178 (287)
.++++||.|||+||++|++..|.++++.++|. ++.++.|+++ . ...+++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 47899999999999999999999999999985 4889999863 1 2233444443
Q ss_pred ----------------------Cccc---EEEEEECCCceEEEEecCCCCHHHHHHHHHHhcC
Q 023089 179 ----------------------HVLP---FFKFYRGSEGHLCSFSCTNATIKKFKDALAKHGT 216 (287)
Q Consensus 179 ----------------------~~~P---Ti~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~~ 216 (287)
..+| +.+++ +.+|+++.+..|..+.+++.+.|++.+.
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflI-D~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLV-NKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEE-CCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1122 44455 4457888777688888899888887643
No 105
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.96 E-value=7.7e-09 Score=88.35 Aligned_cols=86 Identities=16% Similarity=0.302 Sum_probs=62.5
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEcc--------------------CcHHHHHhCCCCcccEEE
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYE--------------------ELKTMCHSLHIHVLPFFK 185 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~--------------------~~~~l~~~~~V~~~PTi~ 185 (287)
.+++++|+||++||++|++..|.+.++.+++ ++.++.|..+ ...++++.|++.++|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 5789999999999999999999999998765 3333333311 134677889999999998
Q ss_pred EEECCCceEEEEecCCCCHHHHHHHHHHh
Q 023089 186 FYRGSEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 186 ~f~~g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
++.. +|++.. .+.....+++.+.++..
T Consensus 152 lID~-~G~I~~-~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 152 LLDQ-DGKIRA-KGLTNTREHLESLLEAD 178 (189)
T ss_pred EECC-CCeEEE-ccCCCCHHHHHHHHHHH
Confidence 8843 456654 32345667788887754
No 106
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.93 E-value=5.2e-09 Score=79.33 Aligned_cols=82 Identities=20% Similarity=0.382 Sum_probs=67.1
Q ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEcc-CcHHHHHhCC--CCcccEEEEEECCCceEEEEecC--
Q 023089 127 DRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYE-ELKTMCHSLH--IHVLPFFKFYRGSEGHLCSFSCT-- 200 (287)
Q Consensus 127 ~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~-~~~~l~~~~~--V~~~PTi~~f~~g~g~~~~~~~g-- 200 (287)
++++++.||++||++|+.+.|.+.++++.+.+ +.+..+|.. .++.+...|+ +..+|++.++.++.. ...+. +
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~-~~~ 109 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE-VDRLV-GGK 109 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch-hhhhh-hcc
Confidence 78999999999999999999999999999984 999999997 7888999999 999999999988653 33333 3
Q ss_pred CCCHHHHHHH
Q 023089 201 NATIKKFKDA 210 (287)
Q Consensus 201 ~~~~~~l~~~ 210 (287)
......+...
T Consensus 110 ~~~~~~~~~~ 119 (127)
T COG0526 110 VLPKEALIDA 119 (127)
T ss_pred cCCHHHHHHH
Confidence 3444444443
No 107
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.92 E-value=3.1e-10 Score=97.58 Aligned_cols=98 Identities=15% Similarity=0.281 Sum_probs=85.0
Q ss_pred eEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC--eEEEEEEccCcHHHHHhCCCCcccEEEE
Q 023089 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN--AIFLKVNYEELKTMCHSLHIHVLPFFKF 186 (287)
Q Consensus 109 v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~--v~~~~vd~~~~~~l~~~~~V~~~PTi~~ 186 (287)
++.+ +.+++.+.+ ..-++++|+||||+.|+.+.|+|+.++.--.+ |.+++||++.|+.|.-+|-|...|||.-
T Consensus 26 ~~~~-~eenw~~~l----~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYH 100 (248)
T KOG0913|consen 26 LTRI-DEENWKELL----TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYH 100 (248)
T ss_pred eEEe-cccchhhhh----chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEE
Confidence 4445 567787765 46789999999999999999999999977544 9999999999999999999999999999
Q ss_pred EECCCceEEEEecCCCCHHHHHHHHHHh
Q 023089 187 YRGSEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 187 f~~g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
.++| ..-+|. |.|+.++++.|+...
T Consensus 101 vkDG--eFrrys-gaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 101 VKDG--EFRRYS-GARDKNDFISFEEHR 125 (248)
T ss_pred eecc--cccccc-CcccchhHHHHHHhh
Confidence 9985 466787 999999999999865
No 108
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.91 E-value=4.2e-09 Score=84.21 Aligned_cols=64 Identities=13% Similarity=0.212 Sum_probs=43.8
Q ss_pred cCCCCeEEEEEECCCChhHHHHHHHH---HHHHHhC-CCeEEEEEEccCcH-HHHHhCCCCcccEEEEEEC
Q 023089 124 NGGDRLVILDFYSPGCGGCKSLHPKI---CQLAELN-PNAIFLKVNYEELK-TMCHSLHIHVLPFFKFYRG 189 (287)
Q Consensus 124 ~~~~k~vlV~FyapWC~~Ck~l~p~~---~~la~~~-~~v~~~~vd~~~~~-~l~~~~~V~~~PTi~~f~~ 189 (287)
..++|+++|+||++||++|+.|...+ .++++.. .++..+.++.+... .+ ...+ .++||++|+..
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~-~~~g-~~vPtivFld~ 88 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNL-SPDG-QYVPRIMFVDP 88 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCc-CccC-cccCeEEEECC
Confidence 35799999999999999999999764 2333332 24666677765221 11 1234 78999999944
No 109
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.88 E-value=1.4e-08 Score=86.02 Aligned_cols=85 Identities=4% Similarity=-0.027 Sum_probs=63.3
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEE------EEEEcc-----------------------------CcH
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIF------LKVNYE-----------------------------ELK 170 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~------~~vd~~-----------------------------~~~ 170 (287)
.+|..+|+|||.||++|+...|.+++++++. +.+ .-||.+ .+.
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~--~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g 135 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAK--FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG 135 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcC--CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc
Confidence 4899999999999999999999999997651 222 333332 222
Q ss_pred HHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHHH
Q 023089 171 TMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALA 212 (287)
Q Consensus 171 ~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~ 212 (287)
.+...|++.++|+..|+-|.+|++.....|..+.+++.+.+.
T Consensus 136 ~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~ 177 (184)
T TIGR01626 136 AVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVIS 177 (184)
T ss_pred hHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 456789999999885444667888877778888888776443
No 110
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.88 E-value=1.9e-08 Score=88.66 Aligned_cols=89 Identities=11% Similarity=0.057 Sum_probs=66.6
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccC--------c---HHHH-HhCC--------------
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEE--------L---KTMC-HSLH-------------- 177 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~--------~---~~l~-~~~~-------------- 177 (287)
.++++||.|||+||++|+...|.+.++.++|. ++.++.|+++. . ..++ ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 46899999999999999999999999999985 48888888731 1 1222 2221
Q ss_pred --------------------CCcccEEEEEECCCceEEEEecCCCCHHHHHHHHHHhc
Q 023089 178 --------------------IHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKHG 215 (287)
Q Consensus 178 --------------------V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~ 215 (287)
|...||.+++. .+|+++....|..+.++|.+.|++.+
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLID-k~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVD-KNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEEC-CCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 12357888874 35777766668889999999998764
No 111
>smart00594 UAS UAS domain.
Probab=98.87 E-value=3.6e-08 Score=78.28 Aligned_cols=87 Identities=14% Similarity=0.197 Sum_probs=65.7
Q ss_pred CCCCeEEEEEECCCChhHHHHHHHH---HHHHHhCC-CeEEEEEEccC--cHHHHHhCCCCcccEEEEEECCCc----eE
Q 023089 125 GGDRLVILDFYSPGCGGCKSLHPKI---CQLAELNP-NAIFLKVNYEE--LKTMCHSLHIHVLPFFKFYRGSEG----HL 194 (287)
Q Consensus 125 ~~~k~vlV~FyapWC~~Ck~l~p~~---~~la~~~~-~v~~~~vd~~~--~~~l~~~~~V~~~PTi~~f~~g~g----~~ 194 (287)
..+|+++|+|+++||+.|+.+.... .++.+... ++.+..+|++. ...++.+|++.++|++.++....| .+
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~ 104 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEW 104 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEE
Confidence 5789999999999999999988643 23333322 57888888764 557899999999999999954322 24
Q ss_pred EEEecCCCCHHHHHHHH
Q 023089 195 CSFSCTNATIKKFKDAL 211 (287)
Q Consensus 195 ~~~~~g~~~~~~l~~~i 211 (287)
+....|..+.++|..+|
T Consensus 105 ~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 105 VGVVEGEISPEELMTFL 121 (122)
T ss_pred eccccCCCCHHHHHHhh
Confidence 44445899999998876
No 112
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=5.4e-09 Score=88.99 Aligned_cols=84 Identities=14% Similarity=0.240 Sum_probs=74.8
Q ss_pred CeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccCcHHHHHhCCCC------
Q 023089 108 NMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEELKTMCHSLHIH------ 179 (287)
Q Consensus 108 ~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~~~~l~~~~~V~------ 179 (287)
.++..++.+.+++.+..+..+.|+|.|||.|.+.|++..|.+.+|..+|. +++|.+||+...++.+.+|+|.
T Consensus 125 ~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~sr 204 (265)
T KOG0914|consen 125 TIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSR 204 (265)
T ss_pred heeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccc
Confidence 35567677888888877888999999999999999999999999999985 4999999999999999999875
Q ss_pred cccEEEEEECCC
Q 023089 180 VLPFFKFYRGSE 191 (287)
Q Consensus 180 ~~PTi~~f~~g~ 191 (287)
..||+++|.+|+
T Consensus 205 QLPT~ilFq~gk 216 (265)
T KOG0914|consen 205 QLPTYILFQKGK 216 (265)
T ss_pred cCCeEEEEccch
Confidence 699999999876
No 113
>PLN02412 probable glutathione peroxidase
Probab=98.81 E-value=4.2e-08 Score=82.11 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=66.8
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEcc--------CcHHH----HHhCC--------------
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYE--------ELKTM----CHSLH-------------- 177 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~--------~~~~l----~~~~~-------------- 177 (287)
.++++||.||++||++|++..|.+.++.++|. ++.++.|+++ ...++ +++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 46999999999999999999999999999986 4888888763 21121 12211
Q ss_pred --------------------CCcccEEEEEECCCceEEEEecCCCCHHHHHHHHHHhcC
Q 023089 178 --------------------IHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKHGT 216 (287)
Q Consensus 178 --------------------V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~~ 216 (287)
|.+.||.+++.. +|+++....|..+.+++...|++.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~-~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSK-EGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECC-CCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 334578777743 46777766699999999999887643
No 114
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.81 E-value=2.8e-08 Score=70.44 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=53.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHH----HHHhCCCCcccEEEEEECCCceEEEEecCCCCHHH
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKT----MCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKK 206 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~----l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~ 206 (287)
+..||++||++|+++.+.+++ .++.+..+|+++++. +.+.+++.++|++++. | +. .. | .+.+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~--~~--~~-g-~~~~~ 68 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--H--KI--IV-G-FDPEK 68 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--C--EE--Ee-e-CCHHH
Confidence 567999999999999998876 368889999987654 4567999999999874 2 33 22 3 57788
Q ss_pred HHHHHH
Q 023089 207 FKDALA 212 (287)
Q Consensus 207 l~~~i~ 212 (287)
|.++|+
T Consensus 69 i~~~i~ 74 (74)
T TIGR02196 69 LDQLLE 74 (74)
T ss_pred HHHHhC
Confidence 888763
No 115
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.81 E-value=7e-08 Score=80.80 Aligned_cols=91 Identities=14% Similarity=0.227 Sum_probs=69.5
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccC-----------------------------cHHHHH
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEE-----------------------------LKTMCH 174 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~-----------------------------~~~l~~ 174 (287)
.++++||+||++||+.|....|.+.++.++++ ++.++.|..+. ...+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 57899999999999999999999999999986 58888887653 124567
Q ss_pred hCCCCcccEEEEEECCCceEEEEe---------cCCCCHHHHHHHHHHhcCC
Q 023089 175 SLHIHVLPFFKFYRGSEGHLCSFS---------CTNATIKKFKDALAKHGTD 217 (287)
Q Consensus 175 ~~~V~~~PTi~~f~~g~g~~~~~~---------~g~~~~~~l~~~i~~~~~~ 217 (287)
.|+|...|+++++.. +|+++... .+..+.+++.+.|+..+..
T Consensus 104 ~~~v~~~P~~~lid~-~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 104 AYGAACTPDFFLFDP-DGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HcCCCcCCcEEEECC-CCeEEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence 889999999999953 35655331 0224567888888877543
No 116
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.80 E-value=2.7e-08 Score=67.04 Aligned_cols=60 Identities=25% Similarity=0.456 Sum_probs=52.1
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHH---hCCCCcccEEEEEECC
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCH---SLHIHVLPFFKFYRGS 190 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~---~~~V~~~PTi~~f~~g 190 (287)
++.||++||++|+++.+.+.++....+++.+..+|++....... .+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 57899999999999999999995556679999999998776554 7899999999999764
No 117
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.79 E-value=9.1e-08 Score=83.37 Aligned_cols=86 Identities=15% Similarity=0.244 Sum_probs=71.4
Q ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEcc-----------CcHHHHHhCCCCcccEEEEEECCCce
Q 023089 125 GGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYE-----------ELKTMCHSLHIHVLPFFKFYRGSEGH 193 (287)
Q Consensus 125 ~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~-----------~~~~l~~~~~V~~~PTi~~f~~g~g~ 193 (287)
..++.-|+.||.+.|+.|+.+.|++..++++| ++.+..|++| .+..++++++|..+|++++...+.++
T Consensus 118 la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 118 LAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred HhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 35788899999999999999999999999999 6666666665 35778999999999999999776555
Q ss_pred EEEEecCCCCHHHHHHHH
Q 023089 194 LCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 194 ~~~~~~g~~~~~~l~~~i 211 (287)
......|..+.++|.+-|
T Consensus 197 ~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEeeecCCHHHHHHhh
Confidence 555555899999998744
No 118
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.75 E-value=5e-08 Score=80.20 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=36.4
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEcc
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYE 167 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~ 167 (287)
.+++++|.|||+||+ |+...|.++++.++|. ++.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 479999999999999 9999999999999985 4888888753
No 119
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.75 E-value=9.4e-08 Score=78.63 Aligned_cols=88 Identities=9% Similarity=0.143 Sum_probs=63.3
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEcc--------C---cHHHHHh-CCC-------------
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYE--------E---LKTMCHS-LHI------------- 178 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~--------~---~~~l~~~-~~V------------- 178 (287)
.+|++||.|||+||++|+...|.+.++.++|. ++.++.|++. . ....+++ +++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 47889999999999999999999999999985 5889988861 1 1222322 221
Q ss_pred -------------CcccE----EEEEECCCceEEEEecCCCCHHHHHHHHHHh
Q 023089 179 -------------HVLPF----FKFYRGSEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 179 -------------~~~PT----i~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
.++|+ .+++ +.+|+++....|..+.+++...|++.
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflI-D~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLV-NPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEE-cCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 13675 5555 33467777666888898888888753
No 120
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.72 E-value=8.2e-08 Score=69.03 Aligned_cols=70 Identities=21% Similarity=0.266 Sum_probs=50.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHh-----CCCCcccEEEEEECCCceEEEEecCCCCHH
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHS-----LHIHVLPFFKFYRGSEGHLCSFSCTNATIK 205 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~-----~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~ 205 (287)
++.||++||++|+++.+.++++. +.+-.+|+++++..... +++.++|++ ++.+| +++ ...+..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-----~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g--~~l----~~~~~~ 69 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-----AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADG--SFL----TNPSAA 69 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-----CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCC--eEe----cCCCHH
Confidence 57899999999999999987764 44567888877665555 389999997 46554 332 244566
Q ss_pred HHHHHHH
Q 023089 206 KFKDALA 212 (287)
Q Consensus 206 ~l~~~i~ 212 (287)
++.+.|+
T Consensus 70 ~~~~~l~ 76 (77)
T TIGR02200 70 QVKAKLQ 76 (77)
T ss_pred HHHHHhh
Confidence 7766654
No 121
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.66 E-value=1.8e-07 Score=75.08 Aligned_cols=92 Identities=21% Similarity=0.287 Sum_probs=58.2
Q ss_pred HHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhC---CCCcccEEEEEECCCceE
Q 023089 118 LVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSL---HIHVLPFFKFYRGSEGHL 194 (287)
Q Consensus 118 f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~---~V~~~PTi~~f~~g~g~~ 194 (287)
..+.+.....+.-++-|..+|||.|++..|.+.++++..|++.+--+..++++++.++| +...+||++++.++ ++.
T Consensus 32 ~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~-~~~ 110 (129)
T PF14595_consen 32 QIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD-GKE 110 (129)
T ss_dssp HHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT---E
T ss_pred HHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC-CCE
Confidence 33455544667889999999999999999999999999999888888888888877655 68899999999654 566
Q ss_pred EEEecCCCCHHHHHHHHH
Q 023089 195 CSFSCTNATIKKFKDALA 212 (287)
Q Consensus 195 ~~~~~g~~~~~~l~~~i~ 212 (287)
+... |.|. +.+.+++.
T Consensus 111 lg~w-gerP-~~~~~~~~ 126 (129)
T PF14595_consen 111 LGRW-GERP-KEVQELVD 126 (129)
T ss_dssp EEEE-ESS--HHHH----
T ss_pred eEEE-cCCC-HHHhhccc
Confidence 6655 5554 44444443
No 122
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=3.9e-07 Score=71.19 Aligned_cols=105 Identities=17% Similarity=0.233 Sum_probs=87.2
Q ss_pred EEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHHHhCCCCcccEEEEEE
Q 023089 110 IEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMCHSLHIHVLPFFKFYR 188 (287)
Q Consensus 110 ~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~ 188 (287)
.+++|..+.++.+.....+.++|.|.-.|-+.|.+|...+.++++...+ +.++-+|+++.+++.+.|++...||++||-
T Consensus 6 p~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFf 85 (142)
T KOG3414|consen 6 PTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFF 85 (142)
T ss_pred cccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEE
Confidence 4677888999999888899999999999999999999999999999888 788999999999999999999999999887
Q ss_pred CCCceEEEEec--------CCCCHHHHHHHHHHh
Q 023089 189 GSEGHLCSFSC--------TNATIKKFKDALAKH 214 (287)
Q Consensus 189 ~g~g~~~~~~~--------g~~~~~~l~~~i~~~ 214 (287)
+++.-.+.+.. ...+.+++++.++-.
T Consensus 86 n~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~i 119 (142)
T KOG3414|consen 86 NNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETI 119 (142)
T ss_pred cCceEEEeeCCCCCceEEEEeccHHHHHHHHHHH
Confidence 75422333322 234678888877754
No 123
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.58 E-value=7e-09 Score=81.06 Aligned_cols=62 Identities=13% Similarity=0.158 Sum_probs=54.4
Q ss_pred cccCC---CCCeeeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCceee
Q 023089 20 FPSSK---DKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFS 85 (287)
Q Consensus 20 ~~a~~---~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~ 85 (287)
++|++ |||+++|+++|++ ..++++||+++ .++|++++++.++..||+.. .++++.++|.+|+
T Consensus 38 ~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~--~~~P~i~i~~~~~~~Ky~~~--~~~~t~~~i~~Fv 104 (111)
T cd03072 38 AVARQLISEKGAINFLTADGDKFRHPLLHLGKTP--ADLPVIAIDSFRHMYLFPDF--EDVYVPGKLKQFV 104 (111)
T ss_pred HHHHHHHhcCceEEEEEEechHhhhHHHHcCCCH--hHCCEEEEEcchhcCcCCCC--ccccCHHHHHHHH
Confidence 89999 9999999999999 56899999997 68999999987666899832 3678899999998
No 124
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=9.7e-08 Score=81.97 Aligned_cols=100 Identities=22% Similarity=0.280 Sum_probs=79.2
Q ss_pred CeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEE
Q 023089 108 NMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFY 187 (287)
Q Consensus 108 ~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f 187 (287)
.++.+...++| +. ...+..+++|||+||.+|++|...++.+++..+++.+++++.++.++++..+.+...|++.++
T Consensus 2 ~v~~i~~~~~f---~~-~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~ 77 (227)
T KOG0911|consen 2 TVQFIVFQEQF---LD-QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFF 77 (227)
T ss_pred CceeehhHHHH---HH-hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeee
Confidence 35667677777 22 378999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCceEEEEecCCCCHHHHHHHHHHh
Q 023089 188 RGSEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 188 ~~g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
..|+ .+... .+.....+..-++..
T Consensus 78 ~~~~--~v~~l-~~~~~~~~~~~~~~~ 101 (227)
T KOG0911|consen 78 FLGE--KVDRL-SGADPPFLVSKVEKL 101 (227)
T ss_pred ecch--hhhhh-hccCcHHHHHHHHHh
Confidence 8754 33333 233344444444443
No 125
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.54 E-value=1.2e-06 Score=73.36 Aligned_cols=86 Identities=12% Similarity=0.105 Sum_probs=61.8
Q ss_pred CCCeEEEEEECCC-ChhHHHHHHHHHHHHHhCCCeEEEEEEccC-----------------------cHHHHHhCCCCcc
Q 023089 126 GDRLVILDFYSPG-CGGCKSLHPKICQLAELNPNAIFLKVNYEE-----------------------LKTMCHSLHIHVL 181 (287)
Q Consensus 126 ~~k~vlV~FyapW-C~~Ck~l~p~~~~la~~~~~v~~~~vd~~~-----------------------~~~l~~~~~V~~~ 181 (287)
.+++++|.||+.| |++|....|.+.++++++.++.++.|..+. ...+++.|++...
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~ 122 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIA 122 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeec
Confidence 4789999999999 999999999999999998788888887652 1256778888777
Q ss_pred c---------EEEEEECCCceEEEEec-----CCCCHHHHHHHHH
Q 023089 182 P---------FFKFYRGSEGHLCSFSC-----TNATIKKFKDALA 212 (287)
Q Consensus 182 P---------Ti~~f~~g~g~~~~~~~-----g~~~~~~l~~~i~ 212 (287)
| +.+++. .+|++..... ...+.+++.++|+
T Consensus 123 ~~~~~g~~~r~tfvId-~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 123 EGPLKGLLARAVFVLD-ENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred ccccCCceeeEEEEEC-CCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 7 777774 3455544321 2235666666553
No 126
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.51 E-value=1.5e-06 Score=77.31 Aligned_cols=89 Identities=9% Similarity=0.140 Sum_probs=72.0
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCc-----------HHHHHhCCCCcccEEEEEECCCceE
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEEL-----------KTMCHSLHIHVLPFFKFYRGSEGHL 194 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~-----------~~l~~~~~V~~~PTi~~f~~g~g~~ 194 (287)
.++.-|+.||.+-|+.|+++.|++..++++| ++.+..|++|.. ..++++++|..+|++++.....++.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 4668899999999999999999999999999 466666665533 4578899999999999997765555
Q ss_pred EEEecCCCCHHHHHHHHHHhc
Q 023089 195 CSFSCTNATIKKFKDALAKHG 215 (287)
Q Consensus 195 ~~~~~g~~~~~~l~~~i~~~~ 215 (287)
.....|..+.++|.+-|....
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVL 248 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHH
Confidence 444449999999998876654
No 127
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.51 E-value=1.4e-08 Score=79.31 Aligned_cols=60 Identities=10% Similarity=0.023 Sum_probs=52.1
Q ss_pred cccCCCC-CeeeeeeecCC--Ccccccccccccccc--CCceeeeccCCeeeecCCCccccc-cccCCceee
Q 023089 20 FPSSKDK-SIVGFCSSRAP--PSQVRVLTSKSISKI--LPAFSIHFKGQSLAVSDHKSLTLW-HVKAPNKFS 85 (287)
Q Consensus 20 ~~a~~~k-~~~~f~~id~~--~~~~~~l~l~~~~~~--~p~l~~~~~~~~~ky~~~~~~~~~-~~~~i~~f~ 85 (287)
++|++|| |+++|+++|++ .+++++|||++ .. +|++++++.++ .||++. +++ +.++|.+|+
T Consensus 42 ~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~--~~~~~P~~~i~~~~~-~KY~~~---~~~~t~e~i~~F~ 107 (111)
T cd03073 42 KVAKDFPDRKLNFAVADKEDFSHELEEFGLDF--SGGEKPVVAIRTAKG-KKYVME---EEFSDVDALEEFL 107 (111)
T ss_pred HHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCc--ccCCCCEEEEEeCCC-CccCCC---cccCCHHHHHHHH
Confidence 8999999 79999999999 56899999997 56 99999988644 899864 567 889999987
No 128
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.50 E-value=1.5e-06 Score=63.11 Aligned_cols=73 Identities=18% Similarity=0.335 Sum_probs=57.1
Q ss_pred EEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceEEEEecC-CCCHHHHHHH
Q 023089 132 LDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCT-NATIKKFKDA 210 (287)
Q Consensus 132 V~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g-~~~~~~l~~~ 210 (287)
|.+++++|+.|..+...+++++..++ +.+--+|....+++ .+|+|.++|++++ || + +.+. | ..+.++|.++
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng--~-~~~~-G~~p~~~el~~~ 74 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGVMSVPALVI--NG--K-VVFV-GRVPSKEELKEL 74 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT-SSSSEEEE--TT--E-EEEE-SS--HHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCCCCCCEEEE--CC--E-EEEE-ecCCCHHHHHHH
Confidence 44579999999999999999999994 87777788777777 9999999999944 53 3 4455 6 7888999988
Q ss_pred HH
Q 023089 211 LA 212 (287)
Q Consensus 211 i~ 212 (287)
|+
T Consensus 75 l~ 76 (76)
T PF13192_consen 75 LE 76 (76)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 129
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.47 E-value=2.9e-08 Score=79.73 Aligned_cols=69 Identities=13% Similarity=-0.079 Sum_probs=58.1
Q ss_pred cccCCCCCe-eeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCceeeeeehhhhhhhH
Q 023089 20 FPSSKDKSI-VGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFSINAQASICVSR 96 (287)
Q Consensus 20 ~~a~~~k~~-~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~~~~~~~~~~~~ 96 (287)
++|++|||+ +.|+|+|++ ..++++||+++ ..+|++++.+..++ ||... .++++.++|.+|+ .
T Consensus 48 ~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~--~~~P~v~i~~~~~~-KY~~~--~~~~t~e~i~~Fv---------~- 112 (130)
T cd02983 48 SVAEKFKKKPWGWLWTEAGAQLDLEEALNIGG--FGYPAMVAINFRKM-KFATL--KGSFSEDGINEFL---------R- 112 (130)
T ss_pred HHHHHhcCCcEEEEEEeCcccHHHHHHcCCCc--cCCCEEEEEecccC-ccccc--cCccCHHHHHHHH---------H-
Confidence 899999999 999999999 45889999987 68999998886555 99843 3789999999998 4
Q ss_pred HHHHHhhhC
Q 023089 97 AMRWWEKTL 105 (287)
Q Consensus 97 ~~~~~~~~~ 105 (287)
++.+|+.
T Consensus 113 --~~l~Gkl 119 (130)
T cd02983 113 --ELSYGRG 119 (130)
T ss_pred --HHHcCCc
Confidence 6666664
No 130
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.8e-06 Score=69.11 Aligned_cols=89 Identities=18% Similarity=0.268 Sum_probs=69.8
Q ss_pred CCCCeEEEEEECCCChhHHHHHHHH---HHHHHhCC-CeEEEEEEccC----------------cHHHHHhCCCCcccEE
Q 023089 125 GGDRLVILDFYSPGCGGCKSLHPKI---CQLAELNP-NAIFLKVNYEE----------------LKTMCHSLHIHVLPFF 184 (287)
Q Consensus 125 ~~~k~vlV~FyapWC~~Ck~l~p~~---~~la~~~~-~v~~~~vd~~~----------------~~~l~~~~~V~~~PTi 184 (287)
..++..++.|-++.|..|.++...+ +++.+.+. ++.++.++++. ..+|++.|+|+++||+
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 5789999999999999999998776 44554443 37777777642 3489999999999999
Q ss_pred EEEECCCceEEEEecCCCCHHHHHHHHHHh
Q 023089 185 KFYRGSEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 185 ~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
+||. ++|+.+.+..|..+++++...++-.
T Consensus 120 vFfd-k~Gk~Il~lPGY~ppe~Fl~vlkYV 148 (182)
T COG2143 120 VFFD-KTGKTILELPGYMPPEQFLAVLKYV 148 (182)
T ss_pred EEEc-CCCCEEEecCCCCCHHHHHHHHHHH
Confidence 9994 4567777777999999998876543
No 131
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.45 E-value=1.4e-06 Score=68.24 Aligned_cols=69 Identities=16% Similarity=0.330 Sum_probs=57.2
Q ss_pred CCCeEEEEEECC-CChhHHHHHHHHHHHHHhCC--CeEEEEEEccCc---------------------HHHHHhCCCC--
Q 023089 126 GDRLVILDFYSP-GCGGCKSLHPKICQLAELNP--NAIFLKVNYEEL---------------------KTMCHSLHIH-- 179 (287)
Q Consensus 126 ~~k~vlV~Fyap-WC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~~---------------------~~l~~~~~V~-- 179 (287)
.+++++|.||+. ||++|+...+.+.++.++++ ++.++.|..+.. ..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 469999999999 99999999999999998875 689988887532 3577889998
Q ss_pred ----cccEEEEEECCCceEE
Q 023089 180 ----VLPFFKFYRGSEGHLC 195 (287)
Q Consensus 180 ----~~PTi~~f~~g~g~~~ 195 (287)
.+|+++++.. +|+++
T Consensus 104 ~~~~~~p~~~lid~-~g~I~ 122 (124)
T PF00578_consen 104 KDTLALPAVFLIDP-DGKIR 122 (124)
T ss_dssp TTSEESEEEEEEET-TSBEE
T ss_pred cCCceEeEEEEECC-CCEEE
Confidence 9999999966 34543
No 132
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.43 E-value=1.5e-06 Score=68.45 Aligned_cols=77 Identities=16% Similarity=0.275 Sum_probs=53.1
Q ss_pred CHhHHHHHHHc--CCCCeEEEEEECC-------CChhHHHHHHHHHHHHHhCC-CeEEEEEEccC-------cHHHHH--
Q 023089 114 SAQELVDALRN--GGDRLVILDFYSP-------GCGGCKSLHPKICQLAELNP-NAIFLKVNYEE-------LKTMCH-- 174 (287)
Q Consensus 114 s~~~f~~~i~~--~~~k~vlV~Fyap-------WC~~Ck~l~p~~~~la~~~~-~v~~~~vd~~~-------~~~l~~-- 174 (287)
.-++|.+.+.. +++++++|.|+++ |||.|.+..|.+++.-...+ +..++.+.+.. +..+-.
T Consensus 4 gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p 83 (119)
T PF06110_consen 4 GYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDP 83 (119)
T ss_dssp CHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--
T ss_pred CHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcc
Confidence 45677777653 5678999999965 99999999999999887765 58888887742 112333
Q ss_pred hCCCCcccEEEEEECC
Q 023089 175 SLHIHVLPFFKFYRGS 190 (287)
Q Consensus 175 ~~~V~~~PTi~~f~~g 190 (287)
++++.++||++-+..+
T Consensus 84 ~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETG 99 (119)
T ss_dssp CC---SSSEEEECTSS
T ss_pred eeeeeecceEEEECCC
Confidence 5999999999999765
No 133
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.43 E-value=6.2e-07 Score=65.59 Aligned_cols=71 Identities=10% Similarity=0.084 Sum_probs=50.3
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcH-----HHHHhCCCCcccEEEEEECCCceEEEEecCCCCHH
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK-----TMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIK 205 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~-----~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~ 205 (287)
++.|+++||++|+++.+.++++.-. +.+.++.+|.+.+. .+.+.+++.++|+++ -+| +.+ +| .+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g--~~i---gg---~~ 69 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--ING--KFI---GG---CS 69 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECC--EEE---cC---HH
Confidence 4789999999999999999998722 23678888876543 366678999999983 353 332 13 35
Q ss_pred HHHHHHH
Q 023089 206 KFKDALA 212 (287)
Q Consensus 206 ~l~~~i~ 212 (287)
++.+..+
T Consensus 70 ~~~~~~~ 76 (84)
T TIGR02180 70 DLLALYK 76 (84)
T ss_pred HHHHHHH
Confidence 6666554
No 134
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.42 E-value=1.8e-06 Score=73.24 Aligned_cols=89 Identities=9% Similarity=0.126 Sum_probs=62.1
Q ss_pred CCCe-EEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccC-------c-H---HH-HHhC--------------
Q 023089 126 GDRL-VILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEE-------L-K---TM-CHSL-------------- 176 (287)
Q Consensus 126 ~~k~-vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~-------~-~---~l-~~~~-------------- 176 (287)
.+++ +++.+||+||++|+...|.++++.++|. ++.++.|+++. . . .. .+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 3564 4566699999999999999999999985 48888887631 0 1 01 1111
Q ss_pred ----------------------CCCcccE---EEEEECCCceEEEEecCCCCHHHHHHHHHHhc
Q 023089 177 ----------------------HIHVLPF---FKFYRGSEGHLCSFSCTNATIKKFKDALAKHG 215 (287)
Q Consensus 177 ----------------------~V~~~PT---i~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~ 215 (287)
++.++|+ .+++ +.+|+++....|..+.+.+.+.|.+.+
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflI-D~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLI-DGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEE-CCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 3446785 3444 556788877668888888888887654
No 135
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.42 E-value=8.1e-07 Score=72.73 Aligned_cols=70 Identities=14% Similarity=0.284 Sum_probs=52.0
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHh----CCCeEEEEEEccCc-------------------------HHHHHhC
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAEL----NPNAIFLKVNYEEL-------------------------KTMCHSL 176 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~----~~~v~~~~vd~~~~-------------------------~~l~~~~ 176 (287)
.+|.|.++|.|.||++|+.+-|.+.++.++ ...+.++-|+.|.. .+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 579999999999999999999988777665 33455555554321 3577899
Q ss_pred CCCcccEEEEEECCCceEEE
Q 023089 177 HIHVLPFFKFYRGSEGHLCS 196 (287)
Q Consensus 177 ~V~~~PTi~~f~~g~g~~~~ 196 (287)
+|.++|++++.+. +|..+.
T Consensus 112 ~v~~iP~l~i~~~-dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKP-DGTVVT 130 (157)
T ss_pred ccCcCceeEEecC-CCCEeh
Confidence 9999999998855 244444
No 136
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.42 E-value=2e-06 Score=69.62 Aligned_cols=72 Identities=7% Similarity=0.134 Sum_probs=54.5
Q ss_pred CCCeEEEEEECCC-ChhHHHHHHHHHHHHHhCCCeEEEEEEccCc-----------------------HHHHHhCCCCc-
Q 023089 126 GDRLVILDFYSPG-CGGCKSLHPKICQLAELNPNAIFLKVNYEEL-----------------------KTMCHSLHIHV- 180 (287)
Q Consensus 126 ~~k~vlV~FyapW-C~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~-----------------------~~l~~~~~V~~- 180 (287)
.+|+++|.||+.| |++|+...|.+.++.++++++.++.|+.+.. ..+++.|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 104 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIK 104 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeec
Confidence 4689999999999 6999999999999999998888888887521 24556677653
Q ss_pred -----ccEEEEEECCCceEEEEe
Q 023089 181 -----LPFFKFYRGSEGHLCSFS 198 (287)
Q Consensus 181 -----~PTi~~f~~g~g~~~~~~ 198 (287)
.|+.+++.. +|++....
T Consensus 105 ~~~~~~~~~~iid~-~G~I~~~~ 126 (143)
T cd03014 105 DLGLLARAVFVIDE-NGKVIYVE 126 (143)
T ss_pred cCCccceEEEEEcC-CCeEEEEE
Confidence 578777742 45555443
No 137
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.42 E-value=1.7e-06 Score=69.46 Aligned_cols=84 Identities=13% Similarity=0.125 Sum_probs=61.4
Q ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccC---------------------cHHHHHhCCCCcc
Q 023089 126 GDRLVILDFY-SPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEE---------------------LKTMCHSLHIHVL 181 (287)
Q Consensus 126 ~~k~vlV~Fy-apWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~---------------------~~~l~~~~~V~~~ 181 (287)
.+++++|.|| +.||+.|....|.+.++.+++. ++.++.|..+. ...+++.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 3789999999 5899999999999999988764 57777776542 2357778898888
Q ss_pred ---------cEEEEEECCCceEEEEecCCCCHHHHHHH
Q 023089 182 ---------PFFKFYRGSEGHLCSFSCTNATIKKFKDA 210 (287)
Q Consensus 182 ---------PTi~~f~~g~g~~~~~~~g~~~~~~l~~~ 210 (287)
|+++++.. +|++.....|....+.+.+-
T Consensus 102 ~~~~~~~~~p~~~lid~-~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 102 KKKKYMGIERSTFLIDP-DGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred cccccCCcceeEEEECC-CCEEEEEEecCCccchHHHH
Confidence 89888853 45665544466655555543
No 138
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.37 E-value=3.8e-06 Score=70.51 Aligned_cols=88 Identities=17% Similarity=0.086 Sum_probs=63.8
Q ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccC----------------------------cHHHHH
Q 023089 126 GDRLVILDFY-SPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEE----------------------------LKTMCH 174 (287)
Q Consensus 126 ~~k~vlV~Fy-apWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~----------------------------~~~l~~ 174 (287)
.++.+||.|| +.||++|....|.+.++++++. ++.++.|..+. ...+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 3689999999 8999999999999999998874 46666666542 123556
Q ss_pred hCCCC------cccEEEEEECCCceEEEEe----cCCCCHHHHHHHHHHh
Q 023089 175 SLHIH------VLPFFKFYRGSEGHLCSFS----CTNATIKKFKDALAKH 214 (287)
Q Consensus 175 ~~~V~------~~PTi~~f~~g~g~~~~~~----~g~~~~~~l~~~i~~~ 214 (287)
.|++. ..|+.+++.. +|++.... ...++.+++.+.|+..
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDP-EGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78876 5788888853 45554433 2345778888888764
No 139
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.36 E-value=1.6e-06 Score=71.84 Aligned_cols=95 Identities=17% Similarity=0.137 Sum_probs=56.9
Q ss_pred HHHhhhCCCCeEEeCC-HhHHHHHHHcCCCCeEEEEEECCCChhHHHHHH-HH--HHHHHhC-CCeEEEEEEccCcHHHH
Q 023089 99 RWWEKTLKPNMIEIQS-AQELVDALRNGGDRLVILDFYSPGCGGCKSLHP-KI--CQLAELN-PNAIFLKVNYEELKTMC 173 (287)
Q Consensus 99 ~~~~~~~~~~v~~i~s-~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p-~~--~~la~~~-~~v~~~~vd~~~~~~l~ 173 (287)
.|+......+|.=..- .+.|...- .++|+++|.++++||+.|+.|.. .| .++++.. .++.-++||.++.|++.
T Consensus 10 pyl~~ha~~~V~W~~w~~ea~~~Ak--~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid 87 (163)
T PF03190_consen 10 PYLRQHAHNPVNWQPWGEEALEKAK--KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDID 87 (163)
T ss_dssp HHHHTTTTSSS--B-SSHHHHHHHH--HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHH
T ss_pred HHHHHhccCCCCcccCCHHHHHHHH--hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHH
Confidence 3444555555554333 35555543 57899999999999999999985 33 3344433 24778899999999998
Q ss_pred HhC--------CCCcccEEEEEECCCceEEE
Q 023089 174 HSL--------HIHVLPFFKFYRGSEGHLCS 196 (287)
Q Consensus 174 ~~~--------~V~~~PTi~~f~~g~g~~~~ 196 (287)
..| +..|+|+.+|... +|+++.
T Consensus 88 ~~y~~~~~~~~~~gGwPl~vfltP-dg~p~~ 117 (163)
T PF03190_consen 88 KIYMNAVQAMSGSGGWPLTVFLTP-DGKPFF 117 (163)
T ss_dssp HHHHHHHHHHHS---SSEEEEE-T-TS-EEE
T ss_pred HHHHHHHHHhcCCCCCCceEEECC-CCCeee
Confidence 887 7899999999955 456654
No 140
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.36 E-value=2e-06 Score=63.57 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=57.9
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcH----HHHHhCC--CCcccEEEEEECCCceEEEEecCCCC
Q 023089 130 VILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK----TMCHSLH--IHVLPFFKFYRGSEGHLCSFSCTNAT 203 (287)
Q Consensus 130 vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~----~l~~~~~--V~~~PTi~~f~~g~g~~~~~~~g~~~ 203 (287)
-++.|+.+||++|++....++++..++.++.+..+|+++++ ++....+ +..+|+++ .+| +.+. |
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g--~~ig---g--- 71 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQ--KHIG---G--- 71 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECC--EEEc---C---
Confidence 36789999999999999999999988878999999998642 4554444 58999975 364 3322 2
Q ss_pred HHHHHHHHHHhc
Q 023089 204 IKKFKDALAKHG 215 (287)
Q Consensus 204 ~~~l~~~i~~~~ 215 (287)
.++|.++++++.
T Consensus 72 ~~~~~~~~~~~~ 83 (85)
T PRK11200 72 CTDFEAYVKENL 83 (85)
T ss_pred HHHHHHHHHHhc
Confidence 468888887764
No 141
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.33 E-value=1.2e-05 Score=63.33 Aligned_cols=90 Identities=9% Similarity=0.098 Sum_probs=69.1
Q ss_pred cCCCCeEEEEEECC----CChhHHHHH--HHHHHHHHhCCCeEEEEEEccC--cHHHHHhCCCCcccEEEEEE--CCCce
Q 023089 124 NGGDRLVILDFYSP----GCGGCKSLH--PKICQLAELNPNAIFLKVNYEE--LKTMCHSLHIHVLPFFKFYR--GSEGH 193 (287)
Q Consensus 124 ~~~~k~vlV~Fyap----WC~~Ck~l~--p~~~~la~~~~~v~~~~vd~~~--~~~l~~~~~V~~~PTi~~f~--~g~g~ 193 (287)
+++.|.++|++|+| ||..|+... |.+.++.+. ++.+...|++. ..+++..+++.++|++.++. +++..
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~ 91 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMT 91 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceE
Confidence 35789999999999 999998664 455555443 58888899874 45688999999999999983 33344
Q ss_pred EEEEecCCCCHHHHHHHHHHhc
Q 023089 194 LCSFSCTNATIKKFKDALAKHG 215 (287)
Q Consensus 194 ~~~~~~g~~~~~~l~~~i~~~~ 215 (287)
++....|..++++|...|+...
T Consensus 92 vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 92 IVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred EEEEEeCCCCHHHHHHHHHHHH
Confidence 5555559999999999988753
No 142
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.33 E-value=5.5e-06 Score=70.59 Aligned_cols=88 Identities=7% Similarity=-0.001 Sum_probs=63.5
Q ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccC-------------------------cHHHHHhCC
Q 023089 126 GDRLVILDFY-SPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEE-------------------------LKTMCHSLH 177 (287)
Q Consensus 126 ~~k~vlV~Fy-apWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~-------------------------~~~l~~~~~ 177 (287)
.++++||.|| +.||++|....|.+.++.+++. ++.++.|.++. ...+++.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 4689999999 9999999999999999888763 56666666542 235677888
Q ss_pred CC------cccEEEEEECCCceEEEEe----cCCCCHHHHHHHHHHh
Q 023089 178 IH------VLPFFKFYRGSEGHLCSFS----CTNATIKKFKDALAKH 214 (287)
Q Consensus 178 V~------~~PTi~~f~~g~g~~~~~~----~g~~~~~~l~~~i~~~ 214 (287)
|. ..|+.+++.. +|++.... ...++.+++.+.|+..
T Consensus 110 v~~~~~g~~~p~tfiID~-~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDP-EGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CcccCCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 86 4698888843 34554322 1346888888887654
No 143
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.31 E-value=6.3e-06 Score=73.04 Aligned_cols=90 Identities=12% Similarity=0.084 Sum_probs=69.4
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCC-CeEEEEEEccC---------cHHHHHhCCCCcccEEEEEECCCceEE
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNP-NAIFLKVNYEE---------LKTMCHSLHIHVLPFFKFYRGSEGHLC 195 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~-~v~~~~vd~~~---------~~~l~~~~~V~~~PTi~~f~~g~g~~~ 195 (287)
.++.-|++||.+-|++|+++.|++..++++|+ .|.-+.+|..- +...+++++|..+|++++.....++..
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~ 221 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVR 221 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEE
Confidence 35688999999999999999999999999984 24444554422 234567899999999999977655554
Q ss_pred EEecCCCCHHHHHHHHHHhc
Q 023089 196 SFSCTNATIKKFKDALAKHG 215 (287)
Q Consensus 196 ~~~~g~~~~~~l~~~i~~~~ 215 (287)
....|..+.++|.+-|....
T Consensus 222 pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 222 PLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EEeeccCCHHHHHHHHHHHH
Confidence 44448999999998877653
No 144
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.28 E-value=1.1e-05 Score=79.87 Aligned_cols=152 Identities=14% Similarity=0.172 Sum_probs=100.6
Q ss_pred CeeeeeeecCC--CccccccccccccccCCceeeec-cC--Ceeee-cCCCccccccccCCceeeeeehhhhhhhHHHHH
Q 023089 27 SIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHF-KG--QSLAV-SDHKSLTLWHVKAPNKFSINAQASICVSRAMRW 100 (287)
Q Consensus 27 ~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~-~~--~~~ky-~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~ 100 (287)
+|+.+...|.. ...++.+|+. ..|++.+.+ .. .+.+| ..+- -..+..|+ . ..
T Consensus 396 ~~i~~~~~~~~~~~~~~~~~~v~----~~P~~~i~~~~~~~~~i~f~g~P~------G~Ef~s~i---------~---~i 453 (555)
T TIGR03143 396 EKLNSEAVNRGEEPESETLPKIT----KLPTVALLDDDGNYTGLKFHGVPS------GHELNSFI---------L---AL 453 (555)
T ss_pred CcEEEEEeccccchhhHhhcCCC----cCCEEEEEeCCCcccceEEEecCc------cHhHHHHH---------H---HH
Confidence 56766666654 4566777764 479998763 21 23555 3331 12233443 1 22
Q ss_pred HhhhCCCCeEEeCCHhHHHHHHHcCCCCeEEE-EEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCC
Q 023089 101 WEKTLKPNMIEIQSAQELVDALRNGGDRLVIL-DFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIH 179 (287)
Q Consensus 101 ~~~~~~~~v~~i~s~~~f~~~i~~~~~k~vlV-~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~ 179 (287)
+.-...+ ..+ + ++..+.+.. =++++-| .|.++||++|......+++++..+|++..-.+|++..++++++|+|.
T Consensus 454 ~~~~~~~--~~l-~-~~~~~~i~~-~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~ 528 (555)
T TIGR03143 454 YNAAGPG--QPL-G-EELLEKIKK-ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIM 528 (555)
T ss_pred HHhcCCC--CCC-C-HHHHHHHHh-cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCce
Confidence 2111111 123 3 333344432 3456544 55799999999999999999999999999999999999999999999
Q ss_pred cccEEEEEECCCceEEEEecCCCCHHHHHHHH
Q 023089 180 VLPFFKFYRGSEGHLCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 180 ~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i 211 (287)
++|++++ || +.+ +. |..+.+++.++|
T Consensus 529 ~vP~~~i--~~--~~~-~~-G~~~~~~~~~~~ 554 (555)
T TIGR03143 529 SVPAIVV--DD--QQV-YF-GKKTIEEMLELI 554 (555)
T ss_pred ecCEEEE--CC--EEE-Ee-eCCCHHHHHHhh
Confidence 9999887 43 333 44 777999998876
No 145
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.27 E-value=1.3e-05 Score=63.43 Aligned_cols=103 Identities=17% Similarity=0.265 Sum_probs=78.7
Q ss_pred EEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHHHhCCCCcccE-EEEE
Q 023089 110 IEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMCHSLHIHVLPF-FKFY 187 (287)
Q Consensus 110 ~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~~~~~V~~~PT-i~~f 187 (287)
.++++..+.++++....++.++|.|..+|-+.|.++...+.+++++..+ ..++-+|+++.|++.+.|.+. -|. ++||
T Consensus 3 ~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF 81 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFF 81 (133)
T ss_dssp EEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEE
T ss_pred cccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEE
Confidence 4677889999999888899999999999999999999999999999877 789999999999999999999 675 5555
Q ss_pred ECCCceEEEEecC--------CCCHHHHHHHHHH
Q 023089 188 RGSEGHLCSFSCT--------NATIKKFKDALAK 213 (287)
Q Consensus 188 ~~g~g~~~~~~~g--------~~~~~~l~~~i~~ 213 (287)
-+++.-.+.+..| ..+.++|++.++.
T Consensus 82 ~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 82 FRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp ETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred ecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence 4543222333222 2357788777764
No 146
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.23 E-value=9e-06 Score=57.23 Aligned_cols=67 Identities=16% Similarity=0.272 Sum_probs=47.0
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhC----CCCcccEEEEEECCCceEEEEecCCCCHHH
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSL----HIHVLPFFKFYRGSEGHLCSFSCTNATIKK 206 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~----~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~ 206 (287)
++.|+++||++|+++.+.+++. ++.+..+|++.++...+.+ ++.++|++++ +| +. . ++.+.++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~--~~--i--~g~~~~~ 68 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD--EH--L--SGFRPDK 68 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC--EE--E--ecCCHHH
Confidence 5789999999999999888763 5677778887665444433 6899999976 32 22 1 3455667
Q ss_pred HHHH
Q 023089 207 FKDA 210 (287)
Q Consensus 207 l~~~ 210 (287)
|.++
T Consensus 69 l~~~ 72 (73)
T cd02976 69 LRAL 72 (73)
T ss_pred HHhh
Confidence 7665
No 147
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.19 E-value=1.1e-05 Score=68.47 Aligned_cols=41 Identities=7% Similarity=0.153 Sum_probs=36.1
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEcc
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYE 167 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~ 167 (287)
.+|++||.|||+||++|++ .|.++++.++|. ++.++.+.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 4799999999999999975 789999999985 5899999884
No 148
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.19 E-value=1.6e-05 Score=64.57 Aligned_cols=84 Identities=13% Similarity=0.140 Sum_probs=56.0
Q ss_pred CCeEEEEEE-CCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccC---------------------c--HHHHHhCCCCc
Q 023089 127 DRLVILDFY-SPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEE---------------------L--KTMCHSLHIHV 180 (287)
Q Consensus 127 ~k~vlV~Fy-apWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~---------------------~--~~l~~~~~V~~ 180 (287)
+++++|.|| ++||+.|....|.+.++.+++. ++.++.|..+. . ..+++.|++..
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~ 107 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFD 107 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCcc
Confidence 378888887 9999999999999999998875 57777776532 2 35667777763
Q ss_pred ----cc--EEEEEECCCceEEEEecC----CCCHHHHHHHH
Q 023089 181 ----LP--FFKFYRGSEGHLCSFSCT----NATIKKFKDAL 211 (287)
Q Consensus 181 ----~P--Ti~~f~~g~g~~~~~~~g----~~~~~~l~~~i 211 (287)
+| +.+++.. +|++.....| .++..++.+.|
T Consensus 108 ~~~~~~~~~~~lid~-~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 108 EDLGVAERAVFVIDR-DGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred ccCCCccceEEEECC-CCEEEEEEecCCcccccchhHHHHh
Confidence 33 6777743 3555443323 34455555444
No 149
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.18 E-value=1.6e-05 Score=64.20 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=34.3
Q ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHhC--CCeEEEEEEccCc
Q 023089 127 DRLVILDFYSPGCGGCKSLHPKICQLAELN--PNAIFLKVNYEEL 169 (287)
Q Consensus 127 ~k~vlV~FyapWC~~Ck~l~p~~~~la~~~--~~v~~~~vd~~~~ 169 (287)
+..+|+.|+++||++|+...|.+.++.+++ .++.++.|..+..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 344555556999999999999999999987 4688888887654
No 150
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.17 E-value=2.8e-05 Score=58.44 Aligned_cols=94 Identities=16% Similarity=0.178 Sum_probs=73.3
Q ss_pred EEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCC-CeEEEEEEccCcHHHHHhCCCCcccEEEEEE
Q 023089 110 IEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNP-NAIFLKVNYEELKTMCHSLHIHVLPFFKFYR 188 (287)
Q Consensus 110 ~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~-~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~ 188 (287)
..+.+.+++.+.+ ..++.++|-|+.++|+ .....|.++|+.+. ++.|+.+. +..+++++++.. |++++|+
T Consensus 2 ~~i~s~~~l~~~~--~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~ 72 (97)
T cd02981 2 KELTSKEELEKFL--DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFK 72 (97)
T ss_pred eecCCHHHHHHHh--ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeC
Confidence 4667777777765 5788999999999998 46778899999886 58887665 556777787754 9999997
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHH
Q 023089 189 GSEGHLCSFSCTNATIKKFKDALAK 213 (287)
Q Consensus 189 ~g~g~~~~~~~g~~~~~~l~~~i~~ 213 (287)
+.......|. |..+.+.|.+||..
T Consensus 73 ~~~~~~~~y~-g~~~~~~l~~fi~~ 96 (97)
T cd02981 73 PFEEEPVEYD-GEFTEESLVEFIKD 96 (97)
T ss_pred CcccCCccCC-CCCCHHHHHHHHHh
Confidence 7544567787 77889999999975
No 151
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.14 E-value=2.3e-05 Score=64.18 Aligned_cols=82 Identities=10% Similarity=0.103 Sum_probs=56.0
Q ss_pred CCCeEEEEEECC-CChhHHHHHHHHHHHHHhCC--CeEEEEEEccC---------------------cHHHHHhCCCCcc
Q 023089 126 GDRLVILDFYSP-GCGGCKSLHPKICQLAELNP--NAIFLKVNYEE---------------------LKTMCHSLHIHVL 181 (287)
Q Consensus 126 ~~k~vlV~Fyap-WC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~---------------------~~~l~~~~~V~~~ 181 (287)
.++++||.||+. ||+.|....+.+.++.+++. ++.++.|..+. ...+++.|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 468999999976 68889999999998888863 57787777643 2346677887654
Q ss_pred ------------cEEEEEECCCceEEEEecCCCCHHHHH
Q 023089 182 ------------PFFKFYRGSEGHLCSFSCTNATIKKFK 208 (287)
Q Consensus 182 ------------PTi~~f~~g~g~~~~~~~g~~~~~~l~ 208 (287)
|+.+++. .+|+++....|....+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~lid-~~G~i~~~~~g~~~~~~~~ 146 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLID-ADGKIEHVFDKFKTSNHHD 146 (154)
T ss_pred cccccccccCcceEEEEEC-CCCEEEEEEcCCCcchhHH
Confidence 5666663 3466665544544444433
No 152
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.12 E-value=3.9e-05 Score=65.45 Aligned_cols=88 Identities=9% Similarity=0.032 Sum_probs=65.7
Q ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccC-------------------------cHHHHHhCC
Q 023089 126 GDRLVILDFY-SPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEE-------------------------LKTMCHSLH 177 (287)
Q Consensus 126 ~~k~vlV~Fy-apWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~-------------------------~~~l~~~~~ 177 (287)
.+++++|.|| +.||+.|....+.+.++.+++. ++.++.|..+. +..+++.|+
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 4679999999 9999999999999999998874 46666666542 346778899
Q ss_pred C----Ccc--cEEEEEECCCceEEEEe----cCCCCHHHHHHHHHHh
Q 023089 178 I----HVL--PFFKFYRGSEGHLCSFS----CTNATIKKFKDALAKH 214 (287)
Q Consensus 178 V----~~~--PTi~~f~~g~g~~~~~~----~g~~~~~~l~~~i~~~ 214 (287)
+ .++ |+.+++.. +|++.... ..+++.+++.+.|+..
T Consensus 110 v~~~~~g~~~r~tfIID~-~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 8 356 99999843 34544322 2457899999988755
No 153
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=2e-05 Score=61.27 Aligned_cols=75 Identities=16% Similarity=0.335 Sum_probs=56.7
Q ss_pred HhHHHHHHHc-CCCCeEEEEEECC--------CChhHHHHHHHHHHHHHhCC-CeEEEEEEccC-------cHHHHHhCC
Q 023089 115 AQELVDALRN-GGDRLVILDFYSP--------GCGGCKSLHPKICQLAELNP-NAIFLKVNYEE-------LKTMCHSLH 177 (287)
Q Consensus 115 ~~~f~~~i~~-~~~k~vlV~Fyap--------WC~~Ck~l~p~~~~la~~~~-~v~~~~vd~~~-------~~~l~~~~~ 177 (287)
.++|++.+.. .+++-++|.|+++ |||.|.+..|.+.+.-+..+ ++.|+.+++.+ +..+....+
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCC
Confidence 4566666542 2455699999974 99999999999999888766 49999999854 223444556
Q ss_pred C-CcccEEEEEEC
Q 023089 178 I-HVLPFFKFYRG 189 (287)
Q Consensus 178 V-~~~PTi~~f~~ 189 (287)
+ .++||++-|++
T Consensus 92 ~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 92 ILTAVPTLLRWKR 104 (128)
T ss_pred ceeecceeeEEcC
Confidence 6 89999999974
No 154
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.07 E-value=3.7e-05 Score=66.38 Aligned_cols=88 Identities=8% Similarity=-0.021 Sum_probs=63.6
Q ss_pred CCeEEE-EEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccC---------------------------cHHHHHhC
Q 023089 127 DRLVIL-DFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEE---------------------------LKTMCHSL 176 (287)
Q Consensus 127 ~k~vlV-~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~---------------------------~~~l~~~~ 176 (287)
++.++| .||++||+.|....+.+.++.+++. ++.++.|.++. +..+++.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 565555 6899999999999999998888764 46666665542 23567788
Q ss_pred CCC------cccEEEEEECCCceEEEEe----cCCCCHHHHHHHHHHhc
Q 023089 177 HIH------VLPFFKFYRGSEGHLCSFS----CTNATIKKFKDALAKHG 215 (287)
Q Consensus 177 ~V~------~~PTi~~f~~g~g~~~~~~----~g~~~~~~l~~~i~~~~ 215 (287)
++. .+|+.+++.. +|++.... .++++.+++...|+...
T Consensus 107 gv~~~~~g~~~p~~fiId~-~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDP-NQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred CCccccCCcEEeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 884 5899999954 34544322 35789999999998763
No 155
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.07 E-value=3e-05 Score=57.59 Aligned_cols=74 Identities=14% Similarity=0.218 Sum_probs=55.6
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCc----HHHHHhCC--CCcccEEEEEECCCceEEEEecCCCCH
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEEL----KTMCHSLH--IHVLPFFKFYRGSEGHLCSFSCTNATI 204 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~----~~l~~~~~--V~~~PTi~~f~~g~g~~~~~~~g~~~~ 204 (287)
++.|..+||++|+++...++++...++++.+..+|++.. .++...++ +.++|++++ +| +. .+| .
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g--~~---igG---~ 71 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DE--KH---VGG---C 71 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CC--EE---ecC---H
Confidence 678999999999999999999988877888888888743 24555666 379999843 53 33 223 4
Q ss_pred HHHHHHHHHh
Q 023089 205 KKFKDALAKH 214 (287)
Q Consensus 205 ~~l~~~i~~~ 214 (287)
++|.++++++
T Consensus 72 ~dl~~~~~~~ 81 (86)
T TIGR02183 72 TDFEQLVKEN 81 (86)
T ss_pred HHHHHHHHhc
Confidence 6888888775
No 156
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.06 E-value=0.00019 Score=57.56 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=82.6
Q ss_pred CCeEEeCCHhHHHHHHHcCCCCeEEEEEECC--CChh-H-HHHHHHHHHHHHhCCC--eEEEEEEccCcHHHHHhCCCC-
Q 023089 107 PNMIEIQSAQELVDALRNGGDRLVILDFYSP--GCGG-C-KSLHPKICQLAELNPN--AIFLKVNYEELKTMCHSLHIH- 179 (287)
Q Consensus 107 ~~v~~i~s~~~f~~~i~~~~~k~vlV~Fyap--WC~~-C-k~l~p~~~~la~~~~~--v~~~~vd~~~~~~l~~~~~V~- 179 (287)
+.++++++.+.+.+.. .+++..+|-|.-. -|.. + ..+...+.++|++|.+ +.|+.+|.++.+.+.+.|+|.
T Consensus 2 ~~~~~l~~~~~~~~~C--~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~ 79 (130)
T cd02983 2 PEIIELTSEDVFEETC--EEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGG 79 (130)
T ss_pred CceEEecCHHHHHhhc--cCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCc
Confidence 5678998877777666 3457778777532 1322 3 4677889999999864 899999999998899999995
Q ss_pred -cccEEEEEECCCceEEEEecCCCCHHHHHHHHHHhcCCCC
Q 023089 180 -VLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKHGTDRC 219 (287)
Q Consensus 180 -~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~~~~~ 219 (287)
++|+++++...+++...+. |..+.+.+.+|+++......
T Consensus 80 ~~~P~v~i~~~~~~KY~~~~-~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 80 FGYPAMVAINFRKMKFATLK-GSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred cCCCEEEEEecccCcccccc-CccCHHHHHHHHHHHHcCCc
Confidence 4999999976433322244 88899999999999866544
No 157
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.05 E-value=4.7e-05 Score=74.82 Aligned_cols=90 Identities=14% Similarity=0.215 Sum_probs=73.9
Q ss_pred HHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceEEEEe
Q 023089 119 VDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLCSFS 198 (287)
Q Consensus 119 ~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~ 198 (287)
.+.+..-.+..-+-.|++++|++|......+++++..+|++.+-.||...+++++++|+|.++|++++ +|+ . .+.
T Consensus 108 ~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~--~-~~~ 182 (517)
T PRK15317 108 IEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGE--E-FGQ 182 (517)
T ss_pred HHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCc--E-EEe
Confidence 34443223445588999999999999999999999999999999999999999999999999999965 533 2 244
Q ss_pred cCCCCHHHHHHHHHHh
Q 023089 199 CTNATIKKFKDALAKH 214 (287)
Q Consensus 199 ~g~~~~~~l~~~i~~~ 214 (287)
|..+.++|.+.+.+.
T Consensus 183 -g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 183 -GRMTLEEILAKLDTG 197 (517)
T ss_pred -cCCCHHHHHHHHhcc
Confidence 888899999988764
No 158
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.04 E-value=2.3e-05 Score=69.16 Aligned_cols=82 Identities=20% Similarity=0.267 Sum_probs=61.4
Q ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEE------------------------------------------
Q 023089 125 GGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFL------------------------------------------ 162 (287)
Q Consensus 125 ~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~------------------------------------------ 162 (287)
.+++.+++.|.-|.||+|+++.+.+.++.+. ++.+.
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 3578889999999999999999999887542 12111
Q ss_pred --EEEccCcHHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHHHHh
Q 023089 163 --KVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 163 --~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
..+++++..+++++||+++||++ |.+| +.+ .|..+.++|.++|++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G--~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNG--TLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCC--eEe---eCCCCHHHHHHHHHHc
Confidence 11223456788999999999999 5564 443 3888999999999865
No 159
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.03 E-value=1.3e-05 Score=68.33 Aligned_cols=107 Identities=21% Similarity=0.420 Sum_probs=86.7
Q ss_pred CeEEeCCHhHHHHHHHcC-CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEE
Q 023089 108 NMIEIQSAQELVDALRNG-GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKF 186 (287)
Q Consensus 108 ~v~~i~s~~~f~~~i~~~-~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~ 186 (287)
.|.++.+..+|.+.|... +.-.++|+.|-|.-.-|..+...+.-||..||-++|+++-.+.- ...++|...++||+++
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~-gas~~F~~n~lP~Lli 217 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNT-GASDRFSLNVLPTLLI 217 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccc-cchhhhcccCCceEEE
Confidence 588999999999998643 45678899999999999999999999999999999999987654 4568899999999999
Q ss_pred EECCC--ceEEE---EecCCCCHHHHHHHHHHhc
Q 023089 187 YRGSE--GHLCS---FSCTNATIKKFKDALAKHG 215 (287)
Q Consensus 187 f~~g~--g~~~~---~~~g~~~~~~l~~~i~~~~ 215 (287)
|++|+ |..+. ..+......++..||++++
T Consensus 218 YkgGeLIgNFv~va~qlgedffa~dle~FL~e~g 251 (273)
T KOG3171|consen 218 YKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYG 251 (273)
T ss_pred eeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence 99976 22211 1123456778899999874
No 160
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.03 E-value=2.8e-05 Score=62.51 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=36.4
Q ss_pred CCCeEEEEEECCCChh-HHHHHHHHHHHHHhCC-----CeEEEEEEcc
Q 023089 126 GDRLVILDFYSPGCGG-CKSLHPKICQLAELNP-----NAIFLKVNYE 167 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~-Ck~l~p~~~~la~~~~-----~v~~~~vd~~ 167 (287)
.+++++|.||++||++ |.+..+.+.++.+++. ++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4789999999999998 9999999999998874 3888888764
No 161
>PRK15000 peroxidase; Provisional
Probab=97.94 E-value=0.00011 Score=63.45 Aligned_cols=88 Identities=11% Similarity=0.036 Sum_probs=65.6
Q ss_pred CCCeEEEEEEC-CCChhHHHHHHHHHHHHHhCC--CeEEEEEEccC----------------------------cHHHHH
Q 023089 126 GDRLVILDFYS-PGCGGCKSLHPKICQLAELNP--NAIFLKVNYEE----------------------------LKTMCH 174 (287)
Q Consensus 126 ~~k~vlV~Fya-pWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~----------------------------~~~l~~ 174 (287)
.++.++|.||+ .||+.|....+.+.++.+++. ++.++.|.++. ...+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 47899999999 599999999999999998874 47777776652 124667
Q ss_pred hCCCC------cccEEEEEECCCceEEEEe----cCCCCHHHHHHHHHHh
Q 023089 175 SLHIH------VLPFFKFYRGSEGHLCSFS----CTNATIKKFKDALAKH 214 (287)
Q Consensus 175 ~~~V~------~~PTi~~f~~g~g~~~~~~----~g~~~~~~l~~~i~~~ 214 (287)
.|++. .+|+.+++.. +|++.... ..+|+.+++.+.|+..
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~-~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDA-NGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78887 7899999953 34544322 2457899999888754
No 162
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.89 E-value=0.0001 Score=67.31 Aligned_cols=107 Identities=14% Similarity=0.189 Sum_probs=73.9
Q ss_pred CCCCeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHH-----HHHHHHHHHHh---CCCeEEEEEEccCcHHHHHhC
Q 023089 105 LKPNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKS-----LHPKICQLAEL---NPNAIFLKVNYEELKTMCHSL 176 (287)
Q Consensus 105 ~~~~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~-----l~p~~~~la~~---~~~v~~~~vd~~~~~~l~~~~ 176 (287)
-+..|+.+ +..+|.+.+. ..+..+|+||.|--..=-. |...+-+|+.+ ..++.|+.||..+...+++++
T Consensus 32 GkDRVi~L-neKNfk~~lK--kyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKL 108 (383)
T PF01216_consen 32 GKDRVIDL-NEKNFKRALK--KYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKL 108 (383)
T ss_dssp SS--CEEE--TTTHHHHHH--H-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHH
T ss_pred CccceEEc-chhHHHHHHH--hhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhc
Confidence 34557788 5688988773 4778889999886432221 22323344444 356999999999999999999
Q ss_pred CCCcccEEEEEECCCceEEEEecCCCCHHHHHHHHHHhcCC
Q 023089 177 HIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKHGTD 217 (287)
Q Consensus 177 ~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~~~ 217 (287)
|+...+++.+|++ ++++.|. |.++++.|.+||-.....
T Consensus 109 gv~E~~SiyVfkd--~~~IEyd-G~~saDtLVeFl~dl~ed 146 (383)
T PF01216_consen 109 GVEEEGSIYVFKD--GEVIEYD-GERSADTLVEFLLDLLED 146 (383)
T ss_dssp T--STTEEEEEET--TEEEEE--S--SHHHHHHHHHHHHSS
T ss_pred CccccCcEEEEEC--CcEEEec-CccCHHHHHHHHHHhccc
Confidence 9999999999998 5799999 999999999999887553
No 163
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.89 E-value=3.4e-05 Score=66.11 Aligned_cols=77 Identities=12% Similarity=0.185 Sum_probs=54.9
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeE---------------------------------------------
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAI--------------------------------------------- 160 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~--------------------------------------------- 160 (287)
+.+..++.|+.|.|++|+++.+.+.+. ..++.
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~---~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPN---ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhc---cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 468999999999999999999988751 11111
Q ss_pred EEEEEccCcHHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHH
Q 023089 161 FLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 161 ~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i 211 (287)
....+++++..++++++|+++||++ |.+|. .+ . |..+.++|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~--~~--~-G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGR--VV--P-GAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCe--Ee--c-CCCCHHHHHhhC
Confidence 1222333456788999999999997 66643 32 3 777788887764
No 164
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.87 E-value=4.8e-05 Score=55.27 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=41.6
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcH-----HHHHhCCCCcccEEEEEECC
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK-----TMCHSLHIHVLPFFKFYRGS 190 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~-----~l~~~~~V~~~PTi~~f~~g 190 (287)
++.|+++|||+|+.+.+.++++... ..++.++.+.+. .+.+..++.++|++ |-+|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g 61 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK---PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGG 61 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC---cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECC
Confidence 5789999999999999999998764 466777766542 34456788999996 4453
No 165
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.86 E-value=0.00017 Score=57.68 Aligned_cols=42 Identities=26% Similarity=0.214 Sum_probs=35.5
Q ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHhC--CCeEEEEEEcc
Q 023089 126 GDRLVILDFY-SPGCGGCKSLHPKICQLAELN--PNAIFLKVNYE 167 (287)
Q Consensus 126 ~~k~vlV~Fy-apWC~~Ck~l~p~~~~la~~~--~~v~~~~vd~~ 167 (287)
.+++++|.|| +.||+.|....|.+.++.+++ .++.++.|..+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d 65 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD 65 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999 789999999999999999886 45777777664
No 166
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.84 E-value=0.00015 Score=62.59 Aligned_cols=85 Identities=7% Similarity=0.013 Sum_probs=60.4
Q ss_pred eEEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccC---------------------------cHHHHHhCCCC
Q 023089 129 LVILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEE---------------------------LKTMCHSLHIH 179 (287)
Q Consensus 129 ~vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~---------------------------~~~l~~~~~V~ 179 (287)
.+|+.|+++||+.|....+.+.++.+++. ++.++.|.++. ...+++.|++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 45668999999999999999999998874 57777776653 23567788875
Q ss_pred ----cc----cEEEEEECCCceEEEEec----CCCCHHHHHHHHHHh
Q 023089 180 ----VL----PFFKFYRGSEGHLCSFSC----TNATIKKFKDALAKH 214 (287)
Q Consensus 180 ----~~----PTi~~f~~g~g~~~~~~~----g~~~~~~l~~~i~~~ 214 (287)
+. |+.+++. .+|++..... .+++.+++.+.|+..
T Consensus 108 ~~~~~~~~~~r~~fiID-~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 108 DPDAGSTLTVRAVFIID-PDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cccCCCCceeeEEEEEC-CCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 23 4567763 3455543321 267889999988765
No 167
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.84 E-value=0.00024 Score=63.64 Aligned_cols=88 Identities=11% Similarity=0.021 Sum_probs=64.3
Q ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccC----------------------------cHHHHH
Q 023089 126 GDRLVILDFY-SPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEE----------------------------LKTMCH 174 (287)
Q Consensus 126 ~~k~vlV~Fy-apWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~----------------------------~~~l~~ 174 (287)
.++.+++.|| +.||+.|....|.|.++.+++. ++.++.|.++. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4577888888 8999999999999999988873 46666665542 235778
Q ss_pred hCCCC-----cccEEEEEECCCceEEEEe----cCCCCHHHHHHHHHHh
Q 023089 175 SLHIH-----VLPFFKFYRGSEGHLCSFS----CTNATIKKFKDALAKH 214 (287)
Q Consensus 175 ~~~V~-----~~PTi~~f~~g~g~~~~~~----~g~~~~~~l~~~i~~~ 214 (287)
.||+. ..|+.+++.. +|++.... ..+++.+++.+.|+..
T Consensus 177 ayGv~~~~g~a~R~tFIID~-dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDK-AGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 89985 5899999953 34443321 3568999999888754
No 168
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.81 E-value=2.6e-06 Score=64.74 Aligned_cols=62 Identities=15% Similarity=0.042 Sum_probs=50.0
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCceee
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFS 85 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~ 85 (287)
++|++|+|++.|+++|++ +++++.||+.+ ..+|++++.+..++.+|.... +..+.++|.+|+
T Consensus 36 ~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~--~~~P~~~~~~~~~~~k~~~~~--~~~~~~~l~~fi 99 (103)
T cd02982 36 EVAKKFKGKLLFVVVDADDFGRHLEYFGLKE--EDLPVIAIINLSDGKKYLMPE--EELTAESLEEFV 99 (103)
T ss_pred HHHHHhCCeEEEEEEchHhhHHHHHHcCCCh--hhCCEEEEEecccccccCCCc--cccCHHHHHHHH
Confidence 799999999999999999 67899999985 579999988755466787652 334777777776
No 169
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.81 E-value=0.00036 Score=53.64 Aligned_cols=96 Identities=11% Similarity=0.155 Sum_probs=65.7
Q ss_pred EEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccCcH----HHHHhCCCC-cccE
Q 023089 110 IEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEELK----TMCHSLHIH-VLPF 183 (287)
Q Consensus 110 ~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~----~l~~~~~V~-~~PT 183 (287)
..|++.+++++.+....+++++|+=.++.||-.......|++.....++ +.++.+|+-++. .++.+|||. .-|-
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 4678899999988776789999999999999999999999999999876 999999998765 467789986 6899
Q ss_pred EEEEECCCceEEEE-ecCCCCHHHH
Q 023089 184 FKFYRGSEGHLCSF-SCTNATIKKF 207 (287)
Q Consensus 184 i~~f~~g~g~~~~~-~~g~~~~~~l 207 (287)
++++++|+ ++.. .-...+.+.|
T Consensus 82 ~ili~~g~--~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 82 VILIKNGK--VVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEETTE--EEEEEEGGG-SHHHH
T ss_pred EEEEECCE--EEEECccccCCHHhc
Confidence 99999964 4432 2144555544
No 170
>PRK13189 peroxiredoxin; Provisional
Probab=97.77 E-value=0.00031 Score=61.55 Aligned_cols=88 Identities=6% Similarity=0.046 Sum_probs=62.1
Q ss_pred CCC-eEEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccC---------------------------cHHHHHh
Q 023089 126 GDR-LVILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEE---------------------------LKTMCHS 175 (287)
Q Consensus 126 ~~k-~vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~---------------------------~~~l~~~ 175 (287)
.++ .+|+.|+++||+.|....+.+.++++++. ++.++.|.++. ...+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 356 45567789999999999999999988873 56777666542 2346677
Q ss_pred CCCC-------cccEEEEEECCCceEEEEe----cCCCCHHHHHHHHHHh
Q 023089 176 LHIH-------VLPFFKFYRGSEGHLCSFS----CTNATIKKFKDALAKH 214 (287)
Q Consensus 176 ~~V~-------~~PTi~~f~~g~g~~~~~~----~g~~~~~~l~~~i~~~ 214 (287)
|++. .+|+.+++.. +|++.... ..+++.+++...|+..
T Consensus 114 ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDP-KGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8875 4688888853 34553322 1567899999888765
No 171
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.76 E-value=0.00013 Score=49.99 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=40.2
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHH----HHhCCCCcccEEEE
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTM----CHSLHIHVLPFFKF 186 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l----~~~~~V~~~PTi~~ 186 (287)
++.|+.+||++|++....|++. ++.+-.+|++..++. .+..+..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5789999999999999888544 478888888876543 33349999999886
No 172
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.75 E-value=0.00029 Score=62.84 Aligned_cols=84 Identities=11% Similarity=0.227 Sum_probs=59.8
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEE----------------------------------------
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVN---------------------------------------- 165 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd---------------------------------------- 165 (287)
+.+.+++.|.-|.|++|+++.+.+.++.+. .++.+..+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 567889999999999999999988776543 122221111
Q ss_pred ------c----cCcHHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHHH
Q 023089 166 ------Y----EELKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALA 212 (287)
Q Consensus 166 ------~----~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~ 212 (287)
| ++|..+++++||+++||+++- +|+|++.... |..+.++|.+.|.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~-d~~G~~~~v~-G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYM-DKDGTLQQVV-GLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEE-CCCCCEEEec-CCCCHHHHHHHhC
Confidence 0 113347788999999999887 5556655555 8888999988775
No 173
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.74 E-value=0.00033 Score=68.82 Aligned_cols=90 Identities=19% Similarity=0.288 Sum_probs=73.3
Q ss_pred HHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceEEEEe
Q 023089 119 VDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLCSFS 198 (287)
Q Consensus 119 ~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~ 198 (287)
.+.+..-.+..-+-.|+++.|++|......+.+++..+|++..-.+|...+++++++|+|.++|++++ +|+ .+ +.
T Consensus 109 ~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~--~~-~~ 183 (515)
T TIGR03140 109 IDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGE--EF-HN 183 (515)
T ss_pred HHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCc--EE-Ee
Confidence 34443223455588899999999999999999999999999999999999999999999999999976 433 22 44
Q ss_pred cCCCCHHHHHHHHHHh
Q 023089 199 CTNATIKKFKDALAKH 214 (287)
Q Consensus 199 ~g~~~~~~l~~~i~~~ 214 (287)
|..+.+++.+.+.+.
T Consensus 184 -g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 184 -GRMDLAELLEKLEET 198 (515)
T ss_pred -cCCCHHHHHHHHhhc
Confidence 888888888887665
No 174
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.73 E-value=0.0014 Score=51.42 Aligned_cols=102 Identities=12% Similarity=0.201 Sum_probs=73.6
Q ss_pred eEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHH-Hh---CCCeEEEEEEcc-----CcHHHHHhCCC-
Q 023089 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLA-EL---NPNAIFLKVNYE-----ELKTMCHSLHI- 178 (287)
Q Consensus 109 v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la-~~---~~~v~~~~vd~~-----~~~~l~~~~~V- 178 (287)
.+.+ +.-+|+..+ ...+.+||.|=... |--.-...|.++| +. .+++.++.|-+. +|.+|+++|+|
T Consensus 6 ~v~L-D~~tFdKvi--~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ 80 (126)
T PF07912_consen 6 CVPL-DELTFDKVI--PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID 80 (126)
T ss_dssp SEEE-STTHHHHHG--GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S
T ss_pred eeec-cceehhhee--ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC
Confidence 3556 346788877 45799999997543 2333445677777 33 456999999885 58899999999
Q ss_pred -CcccEEEEEECCCceEEEE--ecCCCCHHHHHHHHHHhcC
Q 023089 179 -HVLPFFKFYRGSEGHLCSF--SCTNATIKKFKDALAKHGT 216 (287)
Q Consensus 179 -~~~PTi~~f~~g~g~~~~~--~~g~~~~~~l~~~i~~~~~ 216 (287)
..+|.+++|..+...++.| . |..+.+.|..|+.++..
T Consensus 81 ke~fPv~~LF~~~~~~pv~~p~~-~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 81 KEDFPVIYLFVGDKEEPVRYPFD-GDVTADNLQRFVKSNTG 120 (126)
T ss_dssp CCC-SEEEEEESSTTSEEEE-TC-S-S-HHHHHHHHHHTSS
T ss_pred cccCCEEEEecCCCCCCccCCcc-CCccHHHHHHHHHhCCC
Confidence 6799999999666789988 6 88999999999999854
No 175
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.70 E-value=0.002 Score=54.70 Aligned_cols=108 Identities=19% Similarity=0.278 Sum_probs=84.3
Q ss_pred CCCCeEEeCCHhHHHHHHHc-CCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccE
Q 023089 105 LKPNMIEIQSAQELVDALRN-GGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPF 183 (287)
Q Consensus 105 ~~~~v~~i~s~~~f~~~i~~-~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PT 183 (287)
.=..|.+| |..++...+.. ..+-.|+|+.|...-+.|+-+...++.+|.+||.++|+++-.+..- ..|.=...||
T Consensus 89 kfG~V~~I-Sg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cI---pNYPe~nlPT 164 (240)
T KOG3170|consen 89 KFGEVFPI-SGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCI---PNYPESNLPT 164 (240)
T ss_pred cccceeec-cchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEeccccccc---CCCcccCCCe
Confidence 34568888 56777776653 4566888999999999999999999999999999999999877653 3577789999
Q ss_pred EEEEECCC--ceEEE---EecCCCCHHHHHHHHHHhcC
Q 023089 184 FKFYRGSE--GHLCS---FSCTNATIKKFKDALAKHGT 216 (287)
Q Consensus 184 i~~f~~g~--g~~~~---~~~g~~~~~~l~~~i~~~~~ 216 (287)
+++|..|. ++.+. +.+-..+.+++..++-+.+.
T Consensus 165 l~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qaga 202 (240)
T KOG3170|consen 165 LLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAGA 202 (240)
T ss_pred EEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhccc
Confidence 99998875 33333 33235678999999887754
No 176
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.69 E-value=0.0005 Score=59.95 Aligned_cols=87 Identities=10% Similarity=0.119 Sum_probs=63.5
Q ss_pred CCe-EEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccC---------------------------cHHHHHhC
Q 023089 127 DRL-VILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEE---------------------------LKTMCHSL 176 (287)
Q Consensus 127 ~k~-vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~---------------------------~~~l~~~~ 176 (287)
++. +|+.|+++||+.|....+.+.++.++|. ++.++.|.++. +..+++.|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y 107 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL 107 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence 455 5689999999999999999999998873 57777777653 12466778
Q ss_pred CCC-------cccEEEEEECCCceEEEE----ecCCCCHHHHHHHHHHh
Q 023089 177 HIH-------VLPFFKFYRGSEGHLCSF----SCTNATIKKFKDALAKH 214 (287)
Q Consensus 177 ~V~-------~~PTi~~f~~g~g~~~~~----~~g~~~~~~l~~~i~~~ 214 (287)
++. .+|+++++.. +|++... ...+++.+++.+.|+..
T Consensus 108 g~~~~~~~~~~~R~tfIID~-dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 108 GMIHPGKGTNTVRAVFIVDD-KGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred CCCccCCCCceeeEEEEECC-CCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 873 6899999953 3444321 12457899999988764
No 177
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.65 E-value=0.00062 Score=59.37 Aligned_cols=87 Identities=9% Similarity=0.051 Sum_probs=61.9
Q ss_pred CCeEE-EEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccCc---------------------------HHHHHhC
Q 023089 127 DRLVI-LDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEEL---------------------------KTMCHSL 176 (287)
Q Consensus 127 ~k~vl-V~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~~---------------------------~~l~~~~ 176 (287)
++.++ +.|+++||+.|....+.+.++++++. ++.++.|.++.. ..+++.|
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~y 112 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRL 112 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHc
Confidence 45555 58889999999999999999998873 577777776532 2456677
Q ss_pred CCC-------cccEEEEEECCCceEEEEe----cCCCCHHHHHHHHHHh
Q 023089 177 HIH-------VLPFFKFYRGSEGHLCSFS----CTNATIKKFKDALAKH 214 (287)
Q Consensus 177 ~V~-------~~PTi~~f~~g~g~~~~~~----~g~~~~~~l~~~i~~~ 214 (287)
++. ..|+.+++.. +|++.... ..+|+.+++.+.|+..
T Consensus 113 gv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 113 GMIHAESSTATVRAVFIVDD-KGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred CCcccccCCceeEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 763 3688888843 34443321 2467999999988765
No 178
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.65 E-value=0.00067 Score=58.30 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=63.6
Q ss_pred CCCeEEEEEEC-CCChhHHHHHHHHHHHHHhCC--CeEEEEEEccC----------------------------cHHHHH
Q 023089 126 GDRLVILDFYS-PGCGGCKSLHPKICQLAELNP--NAIFLKVNYEE----------------------------LKTMCH 174 (287)
Q Consensus 126 ~~k~vlV~Fya-pWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~----------------------------~~~l~~ 174 (287)
.++.++|.||+ .||++|....+.+.++++++. ++.++.|+++. ..++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 36789999995 889999999999999988875 57777777652 124677
Q ss_pred hCCCC------cccEEEEEECCCceEEEEe----cCCCCHHHHHHHHHHh
Q 023089 175 SLHIH------VLPFFKFYRGSEGHLCSFS----CTNATIKKFKDALAKH 214 (287)
Q Consensus 175 ~~~V~------~~PTi~~f~~g~g~~~~~~----~g~~~~~~l~~~i~~~ 214 (287)
.|++. .+|+.+++.+ +|++.... ..+++.+++.+.|+..
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~-~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDP-KGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HcCCcccCCCceEEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 88885 4788888854 35544322 2457888888887654
No 179
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.62 E-value=0.0002 Score=49.85 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=38.6
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHH----HHhCCCCcccEEE
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTM----CHSLHIHVLPFFK 185 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l----~~~~~V~~~PTi~ 185 (287)
++.|+++||++|+++...+.+.. +.+..+|++.+++. .+..+...+|+++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~ 55 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQIF 55 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 56799999999999999988775 67778888776543 3345777888773
No 180
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.58 E-value=0.00048 Score=49.10 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=47.3
Q ss_pred EEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhC---CCCcccEEEEEECCCceEEEEecCCCCHHHHH
Q 023089 132 LDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSL---HIHVLPFFKFYRGSEGHLCSFSCTNATIKKFK 208 (287)
Q Consensus 132 V~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~---~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~ 208 (287)
..|..+||++|++....|++. ++.+-.+|+++++.....+ +..++|++++ +|+ . .. ++.+.+.|.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~-~---~~-~G~~~~~~~ 69 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD-L---SW-SGFRPDKLK 69 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC-c---EE-eccCHHHHH
Confidence 467889999999999988753 6778888988877655544 8889999754 433 1 22 456667665
Q ss_pred H
Q 023089 209 D 209 (287)
Q Consensus 209 ~ 209 (287)
+
T Consensus 70 ~ 70 (72)
T TIGR02194 70 A 70 (72)
T ss_pred h
Confidence 4
No 181
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.56 E-value=0.00091 Score=49.06 Aligned_cols=71 Identities=11% Similarity=0.126 Sum_probs=52.7
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHH---HhCCCCcccEEEEEECCCceEEEEecCCCCHHHH
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMC---HSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKF 207 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~---~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l 207 (287)
+..|..+||++|++....|++ .++.|-.+|++++++.. +..+...+|++++ ++ ..+ .+.+.+.|
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~-~~~-----~Gf~~~~l 69 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD-LSW-----SGFRPDMI 69 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC-EEE-----ecCCHHHH
Confidence 567889999999999988865 36888889998876533 3457789999854 32 122 45668999
Q ss_pred HHHHHHh
Q 023089 208 KDALAKH 214 (287)
Q Consensus 208 ~~~i~~~ 214 (287)
.+.+..+
T Consensus 70 ~~~~~~~ 76 (81)
T PRK10329 70 NRLHPAP 76 (81)
T ss_pred HHHHHhh
Confidence 9888765
No 182
>PTZ00062 glutaredoxin; Provisional
Probab=97.56 E-value=0.00027 Score=61.00 Aligned_cols=125 Identities=10% Similarity=0.078 Sum_probs=69.6
Q ss_pred cccCCCCCeeeeeeecCCCccccccccccccccCCceeeeccCCee-eecCCCccccccccCCceeeeeehhhhhhhHHH
Q 023089 20 FPSSKDKSIVGFCSSRAPPSQVRVLTSKSISKILPAFSIHFKGQSL-AVSDHKSLTLWHVKAPNKFSINAQASICVSRAM 98 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~~~~~~~l~l~~~~~~~p~l~~~~~~~~~-ky~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 98 (287)
.+|++|.. +.|+.||++ +++. ..|++.+..++... ++. ..+...+..++
T Consensus 41 ~l~~~~~~-~~F~~V~~d------~~V~----~vPtfv~~~~g~~i~r~~------G~~~~~~~~~~------------- 90 (204)
T PTZ00062 41 ALVEDFPS-LEFYVVNLA------DANN----EYGVFEFYQNSQLINSLE------GCNTSTLVSFI------------- 90 (204)
T ss_pred HHHHHCCC-cEEEEEccc------cCcc----cceEEEEEECCEEEeeee------CCCHHHHHHHH-------------
Confidence 67888855 999999987 7774 59999865422221 221 11233333332
Q ss_pred HHHhhhCCCCeEEeCCHhHHHHHHHcCCCCeEEEEEE----CCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHH
Q 023089 99 RWWEKTLKPNMIEIQSAQELVDALRNGGDRLVILDFY----SPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCH 174 (287)
Q Consensus 99 ~~~~~~~~~~v~~i~s~~~f~~~i~~~~~k~vlV~Fy----apWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~ 174 (287)
..|.+..... . ..+-..+.+ . + ++|+|.=. +|||+.|+++...|++. ++.+..+|+++++++.+
T Consensus 91 ~~~~~~~~~~--~--~~~~v~~li-~-~-~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~ 158 (204)
T PTZ00062 91 RGWAQKGSSE--D--TVEKIERLI-R-N-HKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLRE 158 (204)
T ss_pred HHHcCCCCHH--H--HHHHHHHHH-h-c-CCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHH
Confidence 2222211100 0 112233433 2 3 44444333 47999999999888765 46677788877665433
Q ss_pred ----hCCCCcccEEEE
Q 023089 175 ----SLHIHVLPFFKF 186 (287)
Q Consensus 175 ----~~~V~~~PTi~~ 186 (287)
.-+...+|.+++
T Consensus 159 ~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 159 ELKVYSNWPTYPQLYV 174 (204)
T ss_pred HHHHHhCCCCCCeEEE
Confidence 335567776553
No 183
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.53 E-value=0.0016 Score=53.22 Aligned_cols=82 Identities=18% Similarity=0.323 Sum_probs=60.6
Q ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHHHhC--CC-eEEEEEEccC--c------------------------------
Q 023089 125 GGDRLVILDFYSPGCGGCKSLHPKICQLAELN--PN-AIFLKVNYEE--L------------------------------ 169 (287)
Q Consensus 125 ~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~--~~-v~~~~vd~~~--~------------------------------ 169 (287)
...+.+|+.|+.+-|++|+++.+.+.++.+++ ++ +.+.-.+.-. .
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ 89 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 35688999999999999999999999998887 43 6666664310 0
Q ss_pred ------------------------------------HHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHHHH
Q 023089 170 ------------------------------------KTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAK 213 (287)
Q Consensus 170 ------------------------------------~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~ 213 (287)
...+++++|.++||+++ +|+ .+ . +..+.+++.+.|++
T Consensus 90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~--~~--~-~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGK--YV--V-GPYTIEELKELIDK 162 (162)
T ss_dssp HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTC--EE--E-TTTSHHHHHHHHHH
T ss_pred hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCE--Ee--C-CCCCHHHHHHHHcC
Confidence 02445679999999988 654 32 3 88999999999975
No 184
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.48 E-value=0.00042 Score=50.42 Aligned_cols=55 Identities=13% Similarity=0.210 Sum_probs=41.2
Q ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCc---HHHHHhCCCCcccEEEE
Q 023089 127 DRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEEL---KTMCHSLHIHVLPFFKF 186 (287)
Q Consensus 127 ~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~---~~l~~~~~V~~~PTi~~ 186 (287)
++.-++.|+.+||++|++....|++. ++.+-.+|++++ ..+....+...+|.+++
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 34457789999999999999988754 566667777655 34555568899999853
No 185
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.45 E-value=0.00042 Score=50.77 Aligned_cols=76 Identities=13% Similarity=0.163 Sum_probs=59.0
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEECCC--c--eEEEEecCCCCHHH
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSE--G--HLCSFSCTNATIKK 206 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~--g--~~~~~~~g~~~~~~ 206 (287)
++.|..|.|+-|..+...++++....+ +.+-.||+++++.+..+|+. .+|.+.+ +|. . .... . +..+.+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~-~IPVl~~--~~~~~~~~~~~~-~-~~~d~~~ 75 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY-RIPVLHI--DGIRQFKEQEEL-K-WRFDEEQ 75 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT-STSEEEE--TT-GGGCTSEEE-E-SSB-HHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC-CCCEEEE--cCccccccccee-C-CCCCHHH
Confidence 678999999999999999999876654 89999999999999999996 7997554 431 0 2222 2 6889999
Q ss_pred HHHHHH
Q 023089 207 FKDALA 212 (287)
Q Consensus 207 l~~~i~ 212 (287)
|.++|+
T Consensus 76 L~~~L~ 81 (81)
T PF05768_consen 76 LRAWLE 81 (81)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999885
No 186
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.45 E-value=0.0023 Score=63.50 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=86.3
Q ss_pred HHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEE-CCCceEEE
Q 023089 118 LVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYR-GSEGHLCS 196 (287)
Q Consensus 118 f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~-~g~g~~~~ 196 (287)
+.+.+..-.+...++.|+.+.|..|..+...++++++..+.+.+...|..++.+++++|+|...|++.++. +|+..-++
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~ 436 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLK 436 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceE
Confidence 44444433455577888899999999999999999988888999889998899999999999999999995 44323478
Q ss_pred EecCCCCHHHHHHHHHHhcCCCCCCCCCCCCChHHHHHhh
Q 023089 197 FSCTNATIKKFKDALAKHGTDRCSLGPAKGLDESELLKLA 236 (287)
Q Consensus 197 ~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~e~~~~~ 236 (287)
|. |-..-.+|..||....... ++...++.....++.
T Consensus 437 f~-g~P~G~Ef~s~i~~i~~~~---~~~~~l~~~~~~~i~ 472 (555)
T TIGR03143 437 FH-GVPSGHELNSFILALYNAA---GPGQPLGEELLEKIK 472 (555)
T ss_pred EE-ecCccHhHHHHHHHHHHhc---CCCCCCCHHHHHHHH
Confidence 88 8888888999888764332 233344554444444
No 187
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.37 E-value=3.7e-05 Score=64.35 Aligned_cols=62 Identities=18% Similarity=0.064 Sum_probs=50.2
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCceee
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFS 85 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~ 85 (287)
.+|+++++++.|+++|++ ++.++.||+++ ..+|++++.+...+.+|... .++++.++|.+|+
T Consensus 119 ~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~--~~~P~~vi~~~~~~~~~~~~--~~~~~~~~i~~Fl 182 (184)
T PF13848_consen 119 DIAKKFKGKINFVYVDADDFPRLLKYFGIDE--DDLPALVIFDSNKGKYYYLP--EGEITPESIEKFL 182 (184)
T ss_dssp HHHHCTTTTSEEEEEETTTTHHHHHHTTTTT--SSSSEEEEEETTTSEEEE----SSCGCHHHHHHHH
T ss_pred HHHHhcCCeEEEEEeehHHhHHHHHHcCCCC--ccCCEEEEEECCCCcEEcCC--CCCCCHHHHHHHh
Confidence 789999999999999999 67889999997 79999998875554443333 3678889888886
No 188
>PHA03050 glutaredoxin; Provisional
Probab=97.33 E-value=0.00062 Score=52.82 Aligned_cols=55 Identities=7% Similarity=-0.004 Sum_probs=39.3
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccC-c----HHHHHhCCCCcccEEE
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE-L----KTMCHSLHIHVLPFFK 185 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~-~----~~l~~~~~V~~~PTi~ 185 (287)
++.|..+|||+|++....|++..-.++.+..+.+|-.. . ..+.+.-|...+|+++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If 74 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIF 74 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE
Confidence 67799999999999999998886555445555554311 2 3455566888999983
No 189
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.31 E-value=0.00055 Score=49.49 Aligned_cols=49 Identities=10% Similarity=0.219 Sum_probs=36.7
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHH----HhCCCCcccEE
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMC----HSLHIHVLPFF 184 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~----~~~~V~~~PTi 184 (287)
++.|+.+||++|++....+++. ++.+-.+|++.+++.. +..+..++|++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI 53 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE
Confidence 3568899999999999999864 4566667777665443 34578899997
No 190
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.25 E-value=0.0013 Score=46.79 Aligned_cols=50 Identities=8% Similarity=0.141 Sum_probs=37.6
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHH----HhCCCC-cccEEE
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMC----HSLHIH-VLPFFK 185 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~----~~~~V~-~~PTi~ 185 (287)
++.|..+||++|++....+++. ++.+-.+|++.+++.. +..+.. ++|+++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 5678899999999999888763 5777778887765443 335666 899773
No 191
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.25 E-value=0.0014 Score=46.72 Aligned_cols=50 Identities=12% Similarity=0.276 Sum_probs=38.9
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHH----HHHhCCCCcccEEE
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKT----MCHSLHIHVLPFFK 185 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~----l~~~~~V~~~PTi~ 185 (287)
++.|+.+||++|++....+++. ++.+-.+|++++++ +.+..+-..+|+++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~ 56 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQIF 56 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 5678999999999999888863 57777888887654 44555778899873
No 192
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.25 E-value=0.0011 Score=48.64 Aligned_cols=58 Identities=17% Similarity=0.331 Sum_probs=42.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCC-CeEEEEEEc--cCc------------------------------HHHHHhCC
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNP-NAIFLKVNY--EEL------------------------------KTMCHSLH 177 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~-~v~~~~vd~--~~~------------------------------~~l~~~~~ 177 (287)
++.|+.++|++|..+.+.++++....+ ++.+....+ ... ..++.++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 468999999999999999999975544 354444432 221 23567789
Q ss_pred CCcccEEEEEE
Q 023089 178 IHVLPFFKFYR 188 (287)
Q Consensus 178 V~~~PTi~~f~ 188 (287)
+.++||+++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999863
No 193
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0044 Score=56.11 Aligned_cols=112 Identities=15% Similarity=0.266 Sum_probs=84.8
Q ss_pred hCCCCeEEeCCHhHHHHHHHc-CCCCeEEEEEECC----CChhHHHHHHHHHHHHHhC----C-----CeEEEEEEccCc
Q 023089 104 TLKPNMIEIQSAQELVDALRN-GGDRLVILDFYSP----GCGGCKSLHPKICQLAELN----P-----NAIFLKVNYEEL 169 (287)
Q Consensus 104 ~~~~~v~~i~s~~~f~~~i~~-~~~k~vlV~Fyap----WC~~Ck~l~p~~~~la~~~----~-----~v~~~~vd~~~~ 169 (287)
+.+..|+.++ .+.|...+.. ..+-.++|.|.|. .|.-|+.....+.-++..+ + .+-|..||.++.
T Consensus 37 ts~~~VI~~n-~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~ 115 (331)
T KOG2603|consen 37 TSESGVIRMN-DDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES 115 (331)
T ss_pred cCCCCeEEec-CcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc
Confidence 5567788885 4777776642 2344677888875 6999999999999998773 1 278999999999
Q ss_pred HHHHHhCCCCcccEEEEEECCCceEE------EEecCCCCHHHHHHHHHHhcCC
Q 023089 170 KTMCHSLHIHVLPFFKFYRGSEGHLC------SFSCTNATIKKFKDALAKHGTD 217 (287)
Q Consensus 170 ~~l~~~~~V~~~PTi~~f~~g~g~~~------~~~~g~~~~~~l~~~i~~~~~~ 217 (287)
+++.+.+++...|++++|+..++++. .+. -+..+|++.+|+++..+-
T Consensus 116 p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~-~g~~Ae~iaqfv~~~tkv 168 (331)
T KOG2603|consen 116 PQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQD-LGFEAEQIAQFVADRTKV 168 (331)
T ss_pred HHHHHHhcccCCCeEEEeCCCccccccCccchhhh-cchhHHHHHHHHHHhhhh
Confidence 99999999999999999965443322 222 234599999999988553
No 194
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.16 E-value=0.0011 Score=53.42 Aligned_cols=41 Identities=24% Similarity=0.621 Sum_probs=35.1
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEc
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNY 166 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~ 166 (287)
..+.+++.|+.++||+|+++.|.+.++..+++++.+...+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 46789999999999999999999999988888766665554
No 195
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.15 E-value=0.0054 Score=47.73 Aligned_cols=97 Identities=12% Similarity=-0.021 Sum_probs=69.8
Q ss_pred HhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHh---CCC-eEEEEEEccCcHHHHHhCCCCc--ccEEEEEE
Q 023089 115 AQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAEL---NPN-AIFLKVNYEELKTMCHSLHIHV--LPFFKFYR 188 (287)
Q Consensus 115 ~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~---~~~-v~~~~vd~~~~~~l~~~~~V~~--~PTi~~f~ 188 (287)
.++..... .++.+..+.|+ .-..-..+.+.+.++|++ +.+ +.|+.+|.+......+.||+.. +|.+.+..
T Consensus 6 ~e~~~~~~--~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~ 81 (111)
T cd03072 6 FENAEELT--EEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDS 81 (111)
T ss_pred cccHHHHh--cCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEc
Confidence 34444433 35555555666 223347788999999999 876 9999999998877889999997 99999986
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHHhc
Q 023089 189 GSEGHLCSFSCTNATIKKFKDALAKHG 215 (287)
Q Consensus 189 ~g~g~~~~~~~g~~~~~~l~~~i~~~~ 215 (287)
...+....+..+..+.+.|.+|+++..
T Consensus 82 ~~~~~Ky~~~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 82 FRHMYLFPDFEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred chhcCcCCCCccccCHHHHHHHHHHHh
Confidence 532222221236788999999999874
No 196
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.14 E-value=0.0011 Score=50.48 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=36.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHH-------HHHhCCCCcccEEEEEECC
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKT-------MCHSLHIHVLPFFKFYRGS 190 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~-------l~~~~~V~~~PTi~~f~~g 190 (287)
++.|..||||+|++....+.++. +.+..+|+++.++ +.+..+...+|.+ |-+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g 69 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG-----VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGG 69 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECC
Confidence 66799999999999999887663 4445566654432 3333467899987 3454
No 197
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.00 E-value=0.004 Score=48.12 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=60.9
Q ss_pred EEeCCHhHHHHHHHcCCCCeEEEEEECCCC---hhHHHHHHHHHHHHHhCCC-eEEEEEEccCcHHHHHhCCCCcccEEE
Q 023089 110 IEIQSAQELVDALRNGGDRLVILDFYSPGC---GGCKSLHPKICQLAELNPN-AIFLKVNYEELKTMCHSLHIHVLPFFK 185 (287)
Q Consensus 110 ~~i~s~~~f~~~i~~~~~k~vlV~FyapWC---~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~~~~l~~~~~V~~~PTi~ 185 (287)
..+ +.+++++.+. .....++ |.+.-| +-|....-++-+|.+.+++ +..+-++-+....+..+|++..+|+++
T Consensus 12 ~~v-d~~~ld~~l~--~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLv 87 (107)
T PF07449_consen 12 PRV-DADTLDAFLA--APGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALV 87 (107)
T ss_dssp EEE--CCCHHHHHH--CCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEE
T ss_pred eee-chhhHHHHHh--CCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEE
Confidence 344 3455666663 3455444 444444 4455556688899999987 677777777788899999999999999
Q ss_pred EEECCCceEEEEecCCCCHH
Q 023089 186 FYRGSEGHLCSFSCTNATIK 205 (287)
Q Consensus 186 ~f~~g~g~~~~~~~g~~~~~ 205 (287)
||++| +.+....|.++-+
T Consensus 88 f~R~g--~~lG~i~gi~dW~ 105 (107)
T PF07449_consen 88 FFRDG--RYLGAIEGIRDWA 105 (107)
T ss_dssp EEETT--EEEEEEESSSTHH
T ss_pred EEECC--EEEEEecCeeccc
Confidence 99984 5666555666543
No 198
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.95 E-value=0.0033 Score=44.58 Aligned_cols=66 Identities=12% Similarity=0.192 Sum_probs=45.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHH---HHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHH
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKT---MCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKF 207 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~---l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l 207 (287)
++.|..+||+.|.+....+++. ++.+..+|+++++. +....+...+|.+ |-+| +.+ +| .+++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g--~~i---gg---~~~l 67 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDG--ELI---GG---SDDL 67 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECC--EEE---eC---HHHH
Confidence 5779999999999998888753 56677777776542 3334588999987 3353 332 23 5667
Q ss_pred HHHH
Q 023089 208 KDAL 211 (287)
Q Consensus 208 ~~~i 211 (287)
.+|+
T Consensus 68 ~~~l 71 (72)
T cd03029 68 EKYF 71 (72)
T ss_pred HHHh
Confidence 6665
No 199
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.91 E-value=0.0063 Score=46.17 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=37.8
Q ss_pred CCeEEEEEE----CCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHH----HHhCCCCcccEEE
Q 023089 127 DRLVILDFY----SPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTM----CHSLHIHVLPFFK 185 (287)
Q Consensus 127 ~k~vlV~Fy----apWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l----~~~~~V~~~PTi~ 185 (287)
.+.|+|+-. +||||+|++....|.+. ++.+..+|+++++++ .+..+...+|.++
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf 72 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY 72 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 345555544 39999999999988775 456777888766543 3445677889874
No 200
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.71 E-value=0.018 Score=44.80 Aligned_cols=75 Identities=9% Similarity=0.163 Sum_probs=58.0
Q ss_pred CChhHHHHHHHHHHHHHhCC--CeEEEEEEccCcHHHHHhCCCCc----ccEEEEEECCCceEEEEecCCC-CHHHHHHH
Q 023089 138 GCGGCKSLHPKICQLAELNP--NAIFLKVNYEELKTMCHSLHIHV----LPFFKFYRGSEGHLCSFSCTNA-TIKKFKDA 210 (287)
Q Consensus 138 WC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~~~~l~~~~~V~~----~PTi~~f~~g~g~~~~~~~g~~-~~~~l~~~ 210 (287)
.-..-..+...+.++|+.++ .+.|+.+|.++.....+.||+.. +|++.++...+.+. ... +.. +.+.|.+|
T Consensus 29 ~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY-~~~-~~~~t~e~i~~F 106 (111)
T cd03073 29 NPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKY-VME-EEFSDVDALEEF 106 (111)
T ss_pred ChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCcc-CCC-cccCCHHHHHHH
Confidence 33445678899999999998 49999999998877889999985 99999986422121 122 566 88999999
Q ss_pred HHHh
Q 023089 211 LAKH 214 (287)
Q Consensus 211 i~~~ 214 (287)
+++.
T Consensus 107 ~~~f 110 (111)
T cd03073 107 LEDF 110 (111)
T ss_pred HHHh
Confidence 9864
No 201
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.67 E-value=0.04 Score=41.90 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=68.0
Q ss_pred eEEeCCHhHHHHHHHcC-CCCeEEEEEECCCChhHHHHHHHHHHHHHhC-CCeEEEEEEccCcHHHHHhCCCCcccEEEE
Q 023089 109 MIEIQSAQELVDALRNG-GDRLVILDFYSPGCGGCKSLHPKICQLAELN-PNAIFLKVNYEELKTMCHSLHIHVLPFFKF 186 (287)
Q Consensus 109 v~~i~s~~~f~~~i~~~-~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~-~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~ 186 (287)
+..|.+.+++.+.+ . .+..++|-|+..--+ .....|.++|+.+ .++.|+.. .++.+...+++. .|++++
T Consensus 2 v~~i~~~~~~e~~~--~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~~-~~~i~l 72 (102)
T cd03066 2 VEIINSERELQAFE--NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFAT---FDSKVAKKLGLK-MNEVDF 72 (102)
T ss_pred ceEcCCHHHHHHHh--cccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEE---CcHHHHHHcCCC-CCcEEE
Confidence 56787888887777 4 466667766665433 3556788888888 56777543 344666778775 799999
Q ss_pred EECCCceEEEEecCCCCHHHHHHHHHHh
Q 023089 187 YRGSEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 187 f~~g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
|++.......|..|..+.+.|.+||..+
T Consensus 73 ~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 73 YEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred eCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 9763324456733788999999999865
No 202
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.65 E-value=0.0059 Score=45.52 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=37.3
Q ss_pred CCeEEEEEEC----CCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHH----HHhCCCCcccEE
Q 023089 127 DRLVILDFYS----PGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTM----CHSLHIHVLPFF 184 (287)
Q Consensus 127 ~k~vlV~Fya----pWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l----~~~~~V~~~PTi 184 (287)
+++|+|+-.. |||++|++....+++.. +.+..+|+++++++ .+..+-..+|++
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~-----i~y~~idv~~~~~~~~~l~~~~g~~tvP~v 67 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG-----VDFGTFDILEDEEVRQGLKEYSNWPTFPQL 67 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC-----CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE
Confidence 3455555442 79999999998887764 56777777666543 344577899997
No 203
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0072 Score=44.17 Aligned_cols=67 Identities=12% Similarity=0.243 Sum_probs=44.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcH-----HHHHhC-CCCcccEEEEEECCCceEEEEecCCCCH
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK-----TMCHSL-HIHVLPFFKFYRGSEGHLCSFSCTNATI 204 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~-----~l~~~~-~V~~~PTi~~f~~g~g~~~~~~~g~~~~ 204 (287)
++.|..+|||+|++....+.+. ++.+..+|++.++ +..++. |.+.+|.+++ +| + ..+|..++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~--~---~igg~~d~ 70 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GG--K---HVGGCDDL 70 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CC--E---EEeCcccH
Confidence 5678899999999999888743 4666666666544 334444 7899998765 42 2 22255566
Q ss_pred HHHHH
Q 023089 205 KKFKD 209 (287)
Q Consensus 205 ~~l~~ 209 (287)
+.+..
T Consensus 71 ~~~~~ 75 (80)
T COG0695 71 DALEA 75 (80)
T ss_pred HHHHh
Confidence 66543
No 204
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.51 E-value=0.048 Score=41.70 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=66.0
Q ss_pred eEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhC-CCeEEEEEEccCcHHHHHhCCCCcccEEEEE
Q 023089 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELN-PNAIFLKVNYEELKTMCHSLHIHVLPFFKFY 187 (287)
Q Consensus 109 v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~-~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f 187 (287)
+.++.+.+++.+.+ ..++.++|-|+..--. .....|.++|+.+ .++.|+... +..+...+++ .|++++|
T Consensus 2 ~~~i~s~~~l~~f~--~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~ 71 (104)
T cd03069 2 SVELRTEAEFEKFL--SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLF 71 (104)
T ss_pred ccccCCHHHHHHHh--ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEE
Confidence 45677778887766 3567777777765433 4667888899888 468886543 4466788888 6889888
Q ss_pred EC------CCceEEEEecCCCCHHHHHHHHHHh
Q 023089 188 RG------SEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 188 ~~------g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
++ -+.....|. |..+.+.|.+||..+
T Consensus 72 ~p~~~~~k~de~~~~y~-g~~~~~~l~~fi~~~ 103 (104)
T cd03069 72 RPPRLSNKFEDSSVKFD-GDLDSSKIKKFIREN 103 (104)
T ss_pred echhhhcccCccccccc-CcCCHHHHHHHHHhh
Confidence 43 112334576 777899999999864
No 205
>PRK10638 glutaredoxin 3; Provisional
Probab=96.48 E-value=0.011 Score=43.29 Aligned_cols=50 Identities=10% Similarity=0.129 Sum_probs=37.3
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHH----HHHhCCCCcccEEE
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKT----MCHSLHIHVLPFFK 185 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~----l~~~~~V~~~PTi~ 185 (287)
++.|..+||++|++....+++. ++.+..+|++.+++ +.+..+...+|+++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~ 57 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF 57 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 5677889999999999888764 46667778876653 34455788899773
No 206
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.27 E-value=0.051 Score=41.32 Aligned_cols=99 Identities=12% Similarity=0.235 Sum_probs=71.4
Q ss_pred EEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEccC--cHHHHHhCCCC----ccc
Q 023089 110 IEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNYEE--LKTMCHSLHIH----VLP 182 (287)
Q Consensus 110 ~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~~~--~~~l~~~~~V~----~~P 182 (287)
..|.+..+|...+ .....|||.|..+--..-.. ...+.++|+...+ -.++.|||.. ...||+++.|. --|
T Consensus 4 e~i~d~KdfKKLL--RTr~NVLvLy~ks~k~a~~~-Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~ 80 (112)
T cd03067 4 EDISDHKDFKKLL--RTRNNVLVLYSKSAKSAEAL-LKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKP 80 (112)
T ss_pred ccccchHHHHHHH--hhcCcEEEEEecchhhHHHH-HHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCc
Confidence 4566778898877 45678888877665444333 3477888888766 7889999976 67899999998 555
Q ss_pred E-EEEEECCCceEEEEecCCCCHHHHHHHHHH
Q 023089 183 F-FKFYRGSEGHLCSFSCTNATIKKFKDALAK 213 (287)
Q Consensus 183 T-i~~f~~g~g~~~~~~~g~~~~~~l~~~i~~ 213 (287)
. +.-|++|+ --..|. ...+...+..|++.
T Consensus 81 ~~LkHYKdG~-fHkdYd-R~~t~kSmv~FlrD 110 (112)
T cd03067 81 VELKHYKDGD-FHTEYN-RQLTFKSMVAFLRD 110 (112)
T ss_pred chhhcccCCC-cccccc-chhhHHHHHHHhhC
Confidence 3 56778875 334565 67788889999864
No 207
>PRK10824 glutaredoxin-4; Provisional
Probab=96.10 E-value=0.024 Score=44.40 Aligned_cols=55 Identities=13% Similarity=0.173 Sum_probs=33.9
Q ss_pred CCeEEEEEEC----CCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHH----hCCCCcccEEEE
Q 023089 127 DRLVILDFYS----PGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCH----SLHIHVLPFFKF 186 (287)
Q Consensus 127 ~k~vlV~Fya----pWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~----~~~V~~~PTi~~ 186 (287)
..+|+|+-.. ||||+|++....|.++. +.+..+|++.++++.. .-+...+|.+++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-----i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACG-----ERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcC-----CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 3454444333 69999999999888774 4444566666554433 235566675543
No 208
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=95.84 E-value=0.19 Score=46.45 Aligned_cols=154 Identities=14% Similarity=0.150 Sum_probs=96.8
Q ss_pred eeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCceeeeeehhhhhhhHHHHHHhhhCC
Q 023089 29 VGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFSINAQASICVSRAMRWWEKTLK 106 (287)
Q Consensus 29 ~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~ 106 (287)
+.|..||+. ...++.||+.+ -+++-++-......|. +.++++.+.+|+ -.-+.
T Consensus 91 igfg~VD~~Kd~klAKKLgv~E----~~SiyVfkd~~~IEyd-----G~~saDtLVeFl----------------~dl~e 145 (383)
T PF01216_consen 91 IGFGMVDSKKDAKLAKKLGVEE----EGSIYVFKDGEVIEYD-----GERSADTLVEFL----------------LDLLE 145 (383)
T ss_dssp EEEEEEETTTTHHHHHHHT--S----TTEEEEEETTEEEEE------S--SHHHHHHHH----------------HHHHS
T ss_pred cceEEeccHHHHHHHHhcCccc----cCcEEEEECCcEEEec-----CccCHHHHHHHH----------------HHhcc
Confidence 999999999 56789999975 6677665323344554 556777777776 23334
Q ss_pred CCeEEeCCHhHHHHHHHcCCCCeEEEEEECCC-ChhHHHHHHHHHHHHHhCC-CeEEEEEEccCcHHHHHhCCCCcccEE
Q 023089 107 PNMIEIQSAQELVDALRNGGDRLVILDFYSPG-CGGCKSLHPKICQLAELNP-NAIFLKVNYEELKTMCHSLHIHVLPFF 184 (287)
Q Consensus 107 ~~v~~i~s~~~f~~~i~~~~~k~vlV~FyapW-C~~Ck~l~p~~~~la~~~~-~v~~~~vd~~~~~~l~~~~~V~~~PTi 184 (287)
.+|..|++..++...-.- .+..-||=|+-+- ..|-+ .|++.|+.|. -+.|..+ -++.+|++++.+ .=.+
T Consensus 146 dPVeiIn~~~e~~~Fe~i-ed~~klIGyFk~~~s~~yk----~FeeAAe~F~p~IkFfAt---fd~~vAk~L~lK-~nev 216 (383)
T PF01216_consen 146 DPVEIINNKHELKAFERI-EDDIKLIGYFKSEDSEHYK----EFEEAAEHFQPYIKFFAT---FDKKVAKKLGLK-LNEV 216 (383)
T ss_dssp SSEEEE-SHHHHHHHHH---SS-EEEEE-SSTTSHHHH----HHHHHHHHCTTTSEEEEE----SHHHHHHHT-S-TT-E
T ss_pred cchhhhcChhhhhhhhhc-ccceeEEEEeCCCCcHHHH----HHHHHHHhhcCceeEEEE---ecchhhhhcCcc-ccce
Confidence 668888887766433321 3356677766664 44433 5677888874 4888763 477889999997 7788
Q ss_pred EEEECCCceEEEEecCCCCHHHHHHHHHHhcC
Q 023089 185 KFYRGSEGHLCSFSCTNATIKKFKDALAKHGT 216 (287)
Q Consensus 185 ~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~~ 216 (287)
-||..=...++...+...+.++|.+||++|..
T Consensus 217 ~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~r 248 (383)
T PF01216_consen 217 DFYEPFMDEPITIPGKPYTEEELVEFIEEHKR 248 (383)
T ss_dssp EEE-TTSSSEEEESSSS--HHHHHHHHHHT-S
T ss_pred eeeccccCCCccCCCCCCCHHHHHHHHHHhch
Confidence 89976545788887667889999999999854
No 209
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=95.57 E-value=0.023 Score=47.15 Aligned_cols=41 Identities=24% Similarity=0.508 Sum_probs=34.1
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEEEc
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKVNY 166 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~vd~ 166 (287)
..++.+++|+.+.||+|+.+.+.+.++.+++++ +.+..+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence 578999999999999999999999999998864 55544443
No 210
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.038 Score=55.13 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=56.9
Q ss_pred CHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHH-H--HHHHHh-CCCeEEEEEEccCcHHHHHhCC--------CCcc
Q 023089 114 SAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPK-I--CQLAEL-NPNAIFLKVNYEELKTMCHSLH--------IHVL 181 (287)
Q Consensus 114 s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~-~--~~la~~-~~~v~~~~vd~~~~~~l~~~~~--------V~~~ 181 (287)
+.+.|...- ..+||+||-...+||..|+.|... | .++|+. +.+++-+|||-++-|++-+.|. --|+
T Consensus 32 ~~eAf~~A~--~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGW 109 (667)
T COG1331 32 GEEAFAKAK--EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGW 109 (667)
T ss_pred CHHHHHHHH--HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCC
Confidence 466776654 579999999999999999999742 2 334443 2348889999999887766553 5689
Q ss_pred cEEEEEECCCceEE
Q 023089 182 PFFKFYRGSEGHLC 195 (287)
Q Consensus 182 PTi~~f~~g~g~~~ 195 (287)
|-.+|.-. +++++
T Consensus 110 PLtVfLTP-d~kPF 122 (667)
T COG1331 110 PLTVFLTP-DGKPF 122 (667)
T ss_pred ceeEEECC-CCcee
Confidence 98777743 23443
No 211
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.41 E-value=0.081 Score=44.56 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=21.6
Q ss_pred EEECCCChhHHHHHHHHHHHHHhCCC
Q 023089 133 DFYSPGCGGCKSLHPKICQLAELNPN 158 (287)
Q Consensus 133 ~FyapWC~~Ck~l~p~~~~la~~~~~ 158 (287)
.|.-|+|+.|-.+.|.|.++..++++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 58999999999999999999999875
No 212
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=95.39 E-value=0.038 Score=52.84 Aligned_cols=51 Identities=12% Similarity=0.200 Sum_probs=38.9
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHH---HHHh---------CCCCcccEEEE
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKT---MCHS---------LHIHVLPFFKF 186 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~---l~~~---------~~V~~~PTi~~ 186 (287)
++.|..||||+|++....+.+. ++.+-.+|+++.+. +.++ .|.+++|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6789999999999999888774 57778888887663 2222 36789999855
No 213
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.00 E-value=0.36 Score=42.52 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=42.8
Q ss_pred CCCeEEeCCHh--HHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEEEE
Q 023089 106 KPNMIEIQSAQ--ELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFLKV 164 (287)
Q Consensus 106 ~~~v~~i~s~~--~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~~v 164 (287)
+.+|+.+.... .+.+.. +.++|++|.|.+-.||+-..-.+.+++++++|.+ +.|+-|
T Consensus 81 ns~vv~l~g~~~~~ildf~--~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~V 140 (237)
T PF00837_consen 81 NSPVVTLDGQRSCRILDFA--KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIV 140 (237)
T ss_pred CCceEeeCCCcceeHHHhc--cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehh
Confidence 34577775433 244444 5799999999999999999999999999999876 344433
No 214
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=94.65 E-value=0.9 Score=34.90 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=62.6
Q ss_pred eEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhC-CCeEEEEEEccCcHHHHHhCCCCcccEEEEE
Q 023089 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELN-PNAIFLKVNYEELKTMCHSLHIHVLPFFKFY 187 (287)
Q Consensus 109 v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~-~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f 187 (287)
+..|.+.+++...+.. .++.++|-|+..--+ .....+.++|+.+ .++.|+... +..+..++++. .|.+++|
T Consensus 2 v~~i~s~~ele~f~~~-~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~ 73 (107)
T cd03068 2 SKQLQTLKQVQEFLRD-GDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVF 73 (107)
T ss_pred ceEcCCHHHHHHHHhc-CCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEE
Confidence 5678888888777632 326666666665433 4566788899888 558885433 44667788876 5778888
Q ss_pred ECC------CceEEEEecCC-CCHHH-HHHHHHHh
Q 023089 188 RGS------EGHLCSFSCTN-ATIKK-FKDALAKH 214 (287)
Q Consensus 188 ~~g------~g~~~~~~~g~-~~~~~-l~~~i~~~ 214 (287)
++. +.....|. |. .+.++ |.+||+++
T Consensus 74 rp~~~~~k~e~~~~~~~-~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 74 QPEKFQSKYEPKSHVLN-KKDSTSEDELKDFFKEH 107 (107)
T ss_pred CcHHHhhhcCcceeeee-ccccchHHHHHHHHhcC
Confidence 432 12345565 44 35544 99999864
No 215
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=94.26 E-value=0.019 Score=52.06 Aligned_cols=94 Identities=17% Similarity=0.221 Sum_probs=73.1
Q ss_pred HHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEc-cCcHHHHHhCCCCcccEEEEEECCCceEEEEe
Q 023089 120 DALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNY-EELKTMCHSLHIHVLPFFKFYRGSEGHLCSFS 198 (287)
Q Consensus 120 ~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~-~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~ 198 (287)
+.+-.+...++=+.||+.||+.-+..+|.+.-....|+.+....++- ..-+....+|++.+.|++.+... .-+..|.
T Consensus 69 ~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~--t~~~~~~ 146 (319)
T KOG2640|consen 69 DAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQ--TCPASYR 146 (319)
T ss_pred HhhccccCCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeecc--ccchhhc
Confidence 33323446788899999999999999999988888887655444332 23456778999999999999864 3566777
Q ss_pred cCCCCHHHHHHHHHHhcC
Q 023089 199 CTNATIKKFKDALAKHGT 216 (287)
Q Consensus 199 ~g~~~~~~l~~~i~~~~~ 216 (287)
|.++...|++|..+...
T Consensus 147 -~~r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 147 -GERDLASLVNFYTEITP 163 (319)
T ss_pred -ccccHHHHHHHHHhhcc
Confidence 89999999999998764
No 216
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=94.23 E-value=1.3 Score=33.39 Aligned_cols=75 Identities=15% Similarity=0.141 Sum_probs=53.6
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHH
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIK 205 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~ 205 (287)
.+...++.|..+. ..|+.+...++++++..+.+.+-..+..+ ..|++.+..+|+..-++|. |-..-.
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~-GiP~Gh 84 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFA-GIPMGH 84 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcccEEEE-ecCCch
Confidence 4455555666655 99999999999999988876664433211 4799999877642347887 777788
Q ss_pred HHHHHHHH
Q 023089 206 KFKDALAK 213 (287)
Q Consensus 206 ~l~~~i~~ 213 (287)
+|..||..
T Consensus 85 Ef~Slila 92 (94)
T cd02974 85 EFTSLVLA 92 (94)
T ss_pred hHHHHHHH
Confidence 88888753
No 217
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=94.07 E-value=0.071 Score=45.98 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=33.1
Q ss_pred CCeEEEEEECCCChhHHHHHHHH---HHHHHhCC-CeEEEEEEc
Q 023089 127 DRLVILDFYSPGCGGCKSLHPKI---CQLAELNP-NAIFLKVNY 166 (287)
Q Consensus 127 ~k~vlV~FyapWC~~Ck~l~p~~---~~la~~~~-~v~~~~vd~ 166 (287)
+++.+|+|+.-.|+||.++.|.+ +.+.+.++ ++.+.++.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 46779999999999999999976 78888887 477776655
No 218
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=93.92 E-value=0.87 Score=38.02 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=26.1
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHHhCCCe
Q 023089 130 VILDFYSPGCGGCKSLHPKICQLAELNPNA 159 (287)
Q Consensus 130 vlV~FyapWC~~Ck~l~p~~~~la~~~~~v 159 (287)
.|.+||..-||+|-...+.+.++.+.++++
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~ 30 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDV 30 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCC
Confidence 367899999999999999999999988653
No 219
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=93.76 E-value=0.016 Score=43.49 Aligned_cols=59 Identities=15% Similarity=0.034 Sum_probs=42.7
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCceee
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFS 85 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~ 85 (287)
.+|+++++++.|+.+|.+ ...++.||+. .+|++.+.+.+....+.+. +..+.+.+.+|+
T Consensus 42 ~~~~~~~~~~~~~~id~~~~~~~~~~~~i~----~~P~~~~~~~~~~~~~~~~---g~~~~~~l~~~~ 102 (103)
T cd03001 42 KAAKALKGIVKVGAVDADVHQSLAQQYGVR----GFPTIKVFGAGKNSPQDYQ---GGRTAKAIVSAA 102 (103)
T ss_pred HHHHHhcCCceEEEEECcchHHHHHHCCCC----ccCEEEEECCCCcceeecC---CCCCHHHHHHHh
Confidence 578889999999999999 5567888885 5999987764433444443 456777776664
No 220
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=93.62 E-value=0.018 Score=43.52 Aligned_cols=58 Identities=14% Similarity=0.001 Sum_probs=39.5
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCcccccc-ccCCcee
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWH-VKAPNKF 84 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~-~~~i~~f 84 (287)
.+|+++++.+.|+.+|.+ ...++.+|+. .+|++.+...++...+.+. +..+ .+.+.+|
T Consensus 43 ~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~----~~Pt~~~~~~g~~~~~~~~---G~~~~~~~l~~~ 103 (104)
T cd03004 43 KAARALKGKVKVGSVDCQKYESLCQQANIR----AYPTIRLYPGNASKYHSYN---GWHRDADSILEF 103 (104)
T ss_pred HHHHHhcCCcEEEEEECCchHHHHHHcCCC----cccEEEEEcCCCCCceEcc---CCCCCHHHHHhh
Confidence 678889999999999999 5567788885 5999987754323333332 3333 5555555
No 221
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.33 Score=37.31 Aligned_cols=53 Identities=13% Similarity=0.215 Sum_probs=35.2
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcH-HH----HHhCCCCcccEEEE
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK-TM----CHSLHIHVLPFFKF 186 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~-~l----~~~~~V~~~PTi~~ 186 (287)
+|.|..+||+.|+++...|.++ -.+..++.+|-..+. ++ .+--+.+.+|.+++
T Consensus 16 VVifSKs~C~~c~~~k~ll~~~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSDL---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred EEEEECCcCchHHHHHHHHHhC---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 5669999999999988888772 234567777766543 32 22234568887654
No 222
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=93.25 E-value=0.19 Score=41.32 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=36.4
Q ss_pred CCeEEEEEE-CCCChhHHHH-HHHHHHHHHhCC--Ce-EEEEEEccC---cHHHHHhCCC
Q 023089 127 DRLVILDFY-SPGCGGCKSL-HPKICQLAELNP--NA-IFLKVNYEE---LKTMCHSLHI 178 (287)
Q Consensus 127 ~k~vlV~Fy-apWC~~Ck~l-~p~~~~la~~~~--~v-~~~~vd~~~---~~~l~~~~~V 178 (287)
+++++|.|| +.||+.|... .+.|.+..+++. ++ .++.|..+. +...++++++
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 445555555 8899999998 999988888864 56 577777764 3345555555
No 223
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=93.15 E-value=0.65 Score=42.24 Aligned_cols=147 Identities=11% Similarity=0.049 Sum_probs=81.0
Q ss_pred eeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCceeeeeehhhhhhhHHHHHHhhhCCCC
Q 023089 31 FCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFSINAQASICVSRAMRWWEKTLKPN 108 (287)
Q Consensus 31 f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~ 108 (287)
.-.+|+. +.++..||+.+ +|++.... +...|.+. +..+.+.|.+|...+. .+-
T Consensus 81 VGKlDaT~f~aiAnefgiqG----YPTIk~~k--gd~a~dYR---G~R~Kd~iieFAhR~a----------------~ai 135 (468)
T KOG4277|consen 81 VGKLDATRFPAIANEFGIQG----YPTIKFFK--GDHAIDYR---GGREKDAIIEFAHRCA----------------AAI 135 (468)
T ss_pred ecccccccchhhHhhhccCC----CceEEEec--CCeeeecC---CCccHHHHHHHHHhcc----------------cce
Confidence 3345666 66788899975 99998663 44444433 4557788888863222 222
Q ss_pred eEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHH-HhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEE
Q 023089 109 MIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLA-ELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFY 187 (287)
Q Consensus 109 v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la-~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f 187 (287)
+..|++.+.-...+ ...+++.+|+|.+.--|- ...+...| +++.-..|....-+-.| ..-..+..|.+.+|
T Consensus 136 I~pi~enQ~~fehl-q~Rhq~ffVf~Gtge~PL----~d~fidAASe~~~~a~FfSaseeVaP---e~~~~kempaV~VF 207 (468)
T KOG4277|consen 136 IEPINENQIEFEHL-QARHQPFFVFFGTGEGPL----FDAFIDAASEKFSVARFFSASEEVAP---EENDAKEMPAVAVF 207 (468)
T ss_pred eeecChhHHHHHHH-hhccCceEEEEeCCCCcH----HHHHHHHhhhheeeeeeeccccccCC---cccchhhccceEEE
Confidence 34454322222333 357889999998654331 12222222 22322334332211122 12345678999999
Q ss_pred ECCCceEEEEecCCCCHHHHHHHHHHh
Q 023089 188 RGSEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 188 ~~g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
++.. -.+.. ..+.++|.+||++.
T Consensus 208 KDet-f~i~d---e~dd~dLseWinRE 230 (468)
T KOG4277|consen 208 KDET-FEIED---EGDDEDLSEWINRE 230 (468)
T ss_pred ccce-eEEEe---cCchhHHHHHHhHh
Confidence 8732 33333 34578899999864
No 224
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.11 E-value=1.4 Score=43.25 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=65.3
Q ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHH
Q 023089 127 DRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKK 206 (287)
Q Consensus 127 ~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~ 206 (287)
.++|-+.++.+-|..|..+...++++++..+.+.+-..+.. ...|++.+..+|+..-++|. |-..-.+
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~-g~P~g~E 85 (517)
T PRK15317 18 ERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGEDTGVRFA-GIPMGHE 85 (517)
T ss_pred CCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCccceEEEE-ecCccHH
Confidence 45665666666899999999999999999887776442211 34799999877654458888 8888889
Q ss_pred HHHHHHHhcCCCCCCCCCCCCChHHHHHhh
Q 023089 207 FKDALAKHGTDRCSLGPAKGLDESELLKLA 236 (287)
Q Consensus 207 l~~~i~~~~~~~~~~~~~~~~~~~e~~~~~ 236 (287)
|..||...... .++...+++.....+.
T Consensus 86 f~s~i~~i~~~---~~~~~~l~~~~~~~i~ 112 (517)
T PRK15317 86 FTSLVLALLQV---GGHPPKLDQEVIEQIK 112 (517)
T ss_pred HHHHHHHHHHh---cCCCCCCCHHHHHHHH
Confidence 99988876432 2233444554444444
No 225
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=92.63 E-value=0.33 Score=44.18 Aligned_cols=151 Identities=16% Similarity=0.135 Sum_probs=90.7
Q ss_pred CeeeeeeecCC--CccccccccccccccCCceeeeccCC--eeeecCCCccccccccCCceeeeeehhhhhhhHHHHHHh
Q 023089 27 SIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQ--SLAVSDHKSLTLWHVKAPNKFSINAQASICVSRAMRWWE 102 (287)
Q Consensus 27 ~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~--~~ky~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~ 102 (287)
|++++..||.+ ..++..+.+. .+|++.+..++. .+-|+. ...++++.+|+ +
T Consensus 49 ~kvvwg~VDcd~e~~ia~ky~I~----KyPTlKvfrnG~~~~rEYRg-----~RsVeaL~efi----------------~ 103 (375)
T KOG0912|consen 49 GKVVWGKVDCDKEDDIADKYHIN----KYPTLKVFRNGEMMKREYRG-----QRSVEALIEFI----------------E 103 (375)
T ss_pred cceEEEEcccchhhHHhhhhccc----cCceeeeeeccchhhhhhcc-----chhHHHHHHHH----------------H
Confidence 89999999999 5577788774 699999666443 335653 34677777666 3
Q ss_pred hhCCCCeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCC-eEEE-EE-EccCcHHHHHhCCCC
Q 023089 103 KTLKPNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPN-AIFL-KV-NYEELKTMCHSLHIH 179 (287)
Q Consensus 103 ~~~~~~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~-v~~~-~v-d~~~~~~l~~~~~V~ 179 (287)
.-+..++.+..+.++++.... .+.+.++.+|-....+.-..+ .++|..+.+ ..|. .+ |.. ....-.
T Consensus 104 kq~s~~i~Ef~sl~~l~n~~~-p~K~~vIgyF~~kdspey~~~----~kva~~lr~dc~f~V~~gD~~------~~~~~~ 172 (375)
T KOG0912|consen 104 KQLSDPINEFESLDQLQNLDI-PSKRTVIGYFPSKDSPEYDNL----RKVASLLRDDCVFLVGFGDLL------KPHEPP 172 (375)
T ss_pred HHhccHHHHHHhHHHHHhhhc-cccceEEEEeccCCCchHHHH----HHHHHHHhhccEEEeeccccc------cCCCCC
Confidence 334455667777777776653 256677777776666554443 444444433 3332 22 221 111122
Q ss_pred cccEEEEEECCCceE-EEEecCCCCHHHHHHHHHHh
Q 023089 180 VLPFFKFYRGSEGHL-CSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 180 ~~PTi~~f~~g~g~~-~~~~~g~~~~~~l~~~i~~~ 214 (287)
+.+ +++|+.+...+ ..|.+...+.+.+..||.+.
T Consensus 173 ~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dK 207 (375)
T KOG0912|consen 173 GKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDK 207 (375)
T ss_pred CCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhc
Confidence 333 45554433222 25886678899999999876
No 226
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=92.45 E-value=0.037 Score=41.63 Aligned_cols=57 Identities=7% Similarity=-0.074 Sum_probs=38.7
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCcee
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKF 84 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f 84 (287)
.+|+++++.+.|+.+|.+ +..++.+++. .+|++.+... +.....+. +..+.+.+.+|
T Consensus 42 ~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~----~~Pt~~~~~~-g~~~~~~~---G~~~~~~l~~f 100 (101)
T cd03003 42 EFAKEMDGVIRIGAVNCGDDRMLCRSQGVN----SYPSLYVFPS-GMNPEKYY---GDRSKESLVKF 100 (101)
T ss_pred HHHHHhcCceEEEEEeCCccHHHHHHcCCC----ccCEEEEEcC-CCCcccCC---CCCCHHHHHhh
Confidence 588999999999999999 5567788885 5999986642 22222221 44455555544
No 227
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.74 E-value=3 Score=40.98 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=64.5
Q ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHH
Q 023089 127 DRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKK 206 (287)
Q Consensus 127 ~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~ 206 (287)
.++|-+.++.+-|..|..+...++++++..+.+.+...+.+ ....|++.++.+|+..-++|. |-..-.+
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~----------~~~~p~~~~~~~~~~~~i~f~-g~P~g~E 86 (515)
T TIGR03140 18 ENPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTAD----------TLRKPSFTILRDGADTGIRFA-GIPGGHE 86 (515)
T ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCC----------cCCCCeEEEecCCcccceEEE-ecCCcHH
Confidence 44555555544799999999999999999888776443322 135699999877653457888 8888889
Q ss_pred HHHHHHHhcCCCCCCCCCCCCChHHHHHhh
Q 023089 207 FKDALAKHGTDRCSLGPAKGLDESELLKLA 236 (287)
Q Consensus 207 l~~~i~~~~~~~~~~~~~~~~~~~e~~~~~ 236 (287)
|..||....... ++...+++.....+.
T Consensus 87 f~s~i~~i~~~~---~~~~~l~~~~~~~~~ 113 (515)
T TIGR03140 87 FTSLVLAILQVG---GHGPKLDEGIIDRIR 113 (515)
T ss_pred HHHHHHHHHHhc---CCCCCCCHHHHHHHH
Confidence 999888763322 233445555444444
No 228
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=91.20 E-value=1.3 Score=31.31 Aligned_cols=75 Identities=13% Similarity=0.089 Sum_probs=43.2
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHH
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDA 210 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~ 210 (287)
+..|+.++|+.|++..-.+....-. ..+..+|....+++ +.-+-..+|++..=..|++.++. .-..+.++
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~---y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~------eS~~I~~y 71 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP---YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLV------DSSVIIST 71 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc---eEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEE------cHHHHHHH
Confidence 3467889999999998666555322 23333343333333 33456789988653222233322 24677788
Q ss_pred HHHhc
Q 023089 211 LAKHG 215 (287)
Q Consensus 211 i~~~~ 215 (287)
|++++
T Consensus 72 L~~~~ 76 (77)
T cd03040 72 LKTYL 76 (77)
T ss_pred HHHHc
Confidence 87653
No 229
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=90.91 E-value=0.19 Score=39.29 Aligned_cols=58 Identities=9% Similarity=-0.090 Sum_probs=40.1
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCceee
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFS 85 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~ 85 (287)
.+|.+|++.+.|+.||++ +..++.+|+. ..|++.+.. .+....... +..+...|..+.
T Consensus 38 ~la~~~~~~v~f~kVDvD~~~~la~~~~V~----~iPTf~~fk-~G~~v~~~~---G~~~~~~~~~~~ 97 (114)
T cd02954 38 KIAEDVSNFAVIYLVDIDEVPDFNKMYELY----DPPTVMFFF-RNKHMKIDL---GTGNNNKINWVF 97 (114)
T ss_pred HHHHHccCceEEEEEECCCCHHHHHHcCCC----CCCEEEEEE-CCEEEEEEc---CCCCCceEEEec
Confidence 588999999999999999 6688899996 499998664 233322221 333445555554
No 230
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=90.82 E-value=0.053 Score=42.81 Aligned_cols=57 Identities=7% Similarity=0.035 Sum_probs=40.0
Q ss_pred cccCCC--CCeeeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCceee
Q 023089 20 FPSSKD--KSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFS 85 (287)
Q Consensus 20 ~~a~~~--k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~ 85 (287)
.+|.++ .+++.|+.||++ ...++.+|+.+ +|++.++.++....|. +..+.+.+.+|+
T Consensus 55 ~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~----iPTl~lfk~G~~v~~~-----G~~~~~~l~~~l 115 (120)
T cd03065 55 ELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE----EDSIYVFKDDEVIEYD-----GEFAADTLVEFL 115 (120)
T ss_pred HHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc----ccEEEEEECCEEEEee-----CCCCHHHHHHHH
Confidence 566677 778999999999 66788999964 9999866533222332 344566666665
No 231
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=90.77 E-value=0.7 Score=38.20 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=33.2
Q ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHhCC--CeEEEEEEcc
Q 023089 126 GDRLVILDFY-SPGCGGCKSLHPKICQLAELNP--NAIFLKVNYE 167 (287)
Q Consensus 126 ~~k~vlV~Fy-apWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~ 167 (287)
.++.||++|| ..|++-|-...-.|++...++. ++.++.|..|
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~D 73 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPD 73 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5679999999 7899999988888888777764 4777777654
No 232
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=90.02 E-value=1.4 Score=31.46 Aligned_cols=58 Identities=7% Similarity=-0.048 Sum_probs=46.8
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccCcHHHHHhCCCCcccEEEEE
Q 023089 130 VILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEELKTMCHSLHIHVLPFFKFY 187 (287)
Q Consensus 130 vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f 187 (287)
.+..|-+..-+..++....+.++.+.+. .+.+=-||+.++|++++.++|-.+||++=.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 3455556666888888888888888763 388888999999999999999999997644
No 233
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=89.95 E-value=1.2 Score=36.42 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=35.6
Q ss_pred EEEEECC------CChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHH----HHHhCCC----CcccEEEE
Q 023089 131 ILDFYSP------GCGGCKSLHPKICQLAELNPNAIFLKVNYEELKT----MCHSLHI----HVLPFFKF 186 (287)
Q Consensus 131 lV~Fyap------WC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~----l~~~~~V----~~~PTi~~ 186 (287)
+|.|.++ +|++|+++...|+.+ +|.+-.+|++.+++ |.+..+- ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4556666 899999999888765 47788888876654 3333443 57786554
No 234
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=89.92 E-value=0.11 Score=40.53 Aligned_cols=56 Identities=11% Similarity=0.075 Sum_probs=37.8
Q ss_pred cccCCCCCeeeeeeecCC--Cccc-cccccccccccCCceeeeccC-CeeeecCCCccccccccCCcee
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQV-RVLTSKSISKILPAFSIHFKG-QSLAVSDHKSLTLWHVKAPNKF 84 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~-~~l~l~~~~~~~p~l~~~~~~-~~~ky~~~~~~~~~~~~~i~~f 84 (287)
.+|+++++.+.|+.||.+ ...+ +.+++. .+|++.+...+ ...+|. +..+.+.|..|
T Consensus 53 ~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~----~~PTl~lf~~g~~~~~y~-----G~~~~~~i~~~ 112 (113)
T cd03006 53 QVAQKLSDQVLFVAINCWWPQGKCRKQKHFF----YFPVIHLYYRSRGPIEYK-----GPMRAPYMEKF 112 (113)
T ss_pred HHHHHhcCCeEEEEEECCCChHHHHHhcCCc----ccCEEEEEECCccceEEe-----CCCCHHHHHhh
Confidence 688999999999999999 3455 478885 59999866422 234554 33344544443
No 235
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=89.72 E-value=1.3 Score=30.81 Aligned_cols=52 Identities=8% Similarity=0.027 Sum_probs=35.0
Q ss_pred EEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccC-cHHHHHhCCCCcccEEEE
Q 023089 132 LDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE-LKTMCHSLHIHVLPFFKF 186 (287)
Q Consensus 132 V~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~-~~~l~~~~~V~~~PTi~~ 186 (287)
+.|+.+||+.|++..-.+++..-. +.+..+|... .+++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~---~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT---VELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC---cEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 357899999999988766655433 4555666543 345655567789998853
No 236
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.80 E-value=0.25 Score=40.39 Aligned_cols=37 Identities=8% Similarity=-0.003 Sum_probs=32.7
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeec
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHF 60 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~ 60 (287)
+++.+|.|++.|+.+|+| .+.++.++++ .+|++++..
T Consensus 85 ~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~----avPtvlvfk 123 (150)
T KOG0910|consen 85 ELVSEYAGKFKLYKVDTDEHPELAEDYEIS----AVPTVLVFK 123 (150)
T ss_pred HHHHhhcCeEEEEEEccccccchHhhccee----eeeEEEEEE
Confidence 678899999999999999 7788999996 599998665
No 237
>PHA03075 glutaredoxin-like protein; Provisional
Probab=88.50 E-value=0.8 Score=35.68 Aligned_cols=30 Identities=20% Similarity=0.414 Sum_probs=27.2
Q ss_pred CeEEEEEECCCChhHHHHHHHHHHHHHhCC
Q 023089 128 RLVILDFYSPGCGGCKSLHPKICQLAELNP 157 (287)
Q Consensus 128 k~vlV~FyapWC~~Ck~l~p~~~~la~~~~ 157 (287)
|.++|.|.-|.|+-|+.....+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 578999999999999999999999988874
No 238
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=88.34 E-value=0.073 Score=39.50 Aligned_cols=57 Identities=12% Similarity=0.080 Sum_probs=41.3
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeeccCC-eeeecCCCccccccccCCceee
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQ-SLAVSDHKSLTLWHVKAPNKFS 85 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~-~~ky~~~~~~~~~~~~~i~~f~ 85 (287)
.+|+++++.+.|+.+|.+ ...++.+++. .+|++.+...+. ..+|. +..+.+.|.+|+
T Consensus 41 ~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~----~~Pt~~~~~~g~~~~~~~-----g~~~~~~l~~~i 100 (103)
T PF00085_consen 41 KLAKEYKDNVKFAKVDCDENKELCKKYGVK----SVPTIIFFKNGKEVKRYN-----GPRNAESLIEFI 100 (103)
T ss_dssp HHHHHTTTTSEEEEEETTTSHHHHHHTTCS----SSSEEEEEETTEEEEEEE-----SSSSHHHHHHHH
T ss_pred ccccccccccccchhhhhccchhhhccCCC----CCCEEEEEECCcEEEEEE-----CCCCHHHHHHHH
Confidence 578888889999999999 4578899985 599998665332 22443 345667777665
No 239
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.66 E-value=3.3 Score=38.86 Aligned_cols=92 Identities=13% Similarity=0.281 Sum_probs=70.8
Q ss_pred hHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceEE
Q 023089 116 QELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLC 195 (287)
Q Consensus 116 ~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~ 195 (287)
++.-+.+..-.+..-+=-|++-.|..|-..-..+.-++-.+|++....||..-..+-.+.-+|.++||+++ +|+ .
T Consensus 105 q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe--~- 179 (520)
T COG3634 105 QDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGE--E- 179 (520)
T ss_pred HHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEE--cch--h-
Confidence 44445554445667777888999999999999999888889999999999876655567779999999765 544 2
Q ss_pred EEecCCCCHHHHHHHHHH
Q 023089 196 SFSCTNATIKKFKDALAK 213 (287)
Q Consensus 196 ~~~~g~~~~~~l~~~i~~ 213 (287)
|..|..+++++..-|..
T Consensus 180 -fg~GRmtleeilaki~~ 196 (520)
T COG3634 180 -FGQGRMTLEEILAKIDT 196 (520)
T ss_pred -hcccceeHHHHHHHhcC
Confidence 33478888888887765
No 240
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=87.06 E-value=0.31 Score=37.96 Aligned_cols=37 Identities=5% Similarity=-0.186 Sum_probs=31.9
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeec
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHF 60 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~ 60 (287)
.+|++|.+++.|+.+|.+ +..+..||+.+ +|+|++..
T Consensus 53 ela~e~~~~v~f~kVdid~~~~la~~f~V~s----IPTli~fk 91 (111)
T cd02965 53 ELLKAFPGRFRAAVVGRADEQALAARFGVLR----TPALLFFR 91 (111)
T ss_pred HHHHHCCCcEEEEEEECCCCHHHHHHcCCCc----CCEEEEEE
Confidence 689999999999999999 66788999964 99998664
No 241
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=87.00 E-value=0.18 Score=37.26 Aligned_cols=37 Identities=8% Similarity=0.093 Sum_probs=30.7
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeec
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHF 60 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~ 60 (287)
.+++.+++.+.|+.+|.+ +..++.|++. .+|++.+..
T Consensus 36 ~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~----~~Pt~~~~~ 74 (96)
T cd02956 36 RLAEEYQGQFVLAKVNCDAQPQIAQQFGVQ----ALPTVYLFA 74 (96)
T ss_pred HHHHHhCCcEEEEEEeccCCHHHHHHcCCC----CCCEEEEEe
Confidence 577888888999999999 5567788885 599999775
No 242
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=86.53 E-value=0.2 Score=37.27 Aligned_cols=57 Identities=9% Similarity=0.045 Sum_probs=36.9
Q ss_pred cccCCCCC---eeeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCcee
Q 023089 20 FPSSKDKS---IVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKF 84 (287)
Q Consensus 20 ~~a~~~k~---~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f 84 (287)
.+|+++++ ++.|+.+|.+ ...++.+++. .+|++.+...+ .....+. +..+.+.+.+|
T Consensus 40 ~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~----~~Pt~~~~~~g-~~~~~~~---G~~~~~~l~~~ 101 (102)
T cd03005 40 QLAKKFNNENPSVKIAKVDCTQHRELCSEFQVR----GYPTLLLFKDG-EKVDKYK---GTRDLDSLKEF 101 (102)
T ss_pred HHHHHHhccCCcEEEEEEECCCChhhHhhcCCC----cCCEEEEEeCC-CeeeEee---CCCCHHHHHhh
Confidence 46777876 7999999998 4567788885 59999866533 2322221 33455555544
No 243
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=86.02 E-value=0.2 Score=37.89 Aligned_cols=59 Identities=8% Similarity=0.008 Sum_probs=38.9
Q ss_pred cccCCCCCeeeeeeecCCC----ccccccccccccccCCceeeeccCC----eeeecCCCccccccccCCceee
Q 023089 20 FPSSKDKSIVGFCSSRAPP----SQVRVLTSKSISKILPAFSIHFKGQ----SLAVSDHKSLTLWHVKAPNKFS 85 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~~----~~~~~l~l~~~~~~~p~l~~~~~~~----~~ky~~~~~~~~~~~~~i~~f~ 85 (287)
.+|+++++.+.|+.+|.+. ..++.|++. .+|++.+...++ ...+.+. +..+.+.+.+|+
T Consensus 42 ~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~----~~Pt~~~~~~~~~~~~~~~~~~~---G~~~~~~l~~fi 108 (109)
T cd03002 42 KAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQ----GFPTLKVFRPPKKASKHAVEDYN---GERSAKAIVDFV 108 (109)
T ss_pred HHHHHhcCCceEEEEecCccccHHHHHHcCCC----cCCEEEEEeCCCccccccccccc---CccCHHHHHHHh
Confidence 5788888889999999882 356678885 599999776333 1222222 445666666664
No 244
>PRK09381 trxA thioredoxin; Provisional
Probab=85.66 E-value=0.26 Score=37.44 Aligned_cols=58 Identities=7% Similarity=0.030 Sum_probs=39.1
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCceee
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFS 85 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~ 85 (287)
.+|+++++++.|+.+|.+ ...++.|++. .+|++.+.. .+...+... +..+.+.+.+|+
T Consensus 45 ~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~----~~Pt~~~~~-~G~~~~~~~---G~~~~~~l~~~i 104 (109)
T PRK09381 45 EIADEYQGKLTVAKLNIDQNPGTAPKYGIR----GIPTLLLFK-NGEVAATKV---GALSKGQLKEFL 104 (109)
T ss_pred HHHHHhCCCcEEEEEECCCChhHHHhCCCC----cCCEEEEEe-CCeEEEEec---CCCCHHHHHHHH
Confidence 577889999999999999 5566788885 599998775 444444332 333444444443
No 245
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=85.19 E-value=3.3 Score=30.71 Aligned_cols=60 Identities=7% Similarity=0.011 Sum_probs=49.4
Q ss_pred CeEEEEEECCCChhHHHHHHHHHHHHHhC-CC-eEEEEEEccCcHHHHHhCCCCcccEEEEE
Q 023089 128 RLVILDFYSPGCGGCKSLHPKICQLAELN-PN-AIFLKVNYEELKTMCHSLHIHVLPFFKFY 187 (287)
Q Consensus 128 k~vlV~FyapWC~~Ck~l~p~~~~la~~~-~~-v~~~~vd~~~~~~l~~~~~V~~~PTi~~f 187 (287)
..++=.|.|..-+..++....+.++.+.+ ++ +.+=-||+.++|++++.++|-.+||++=-
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~ 64 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKI 64 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhc
Confidence 45566677888888898888888888764 33 78888999999999999999999997644
No 246
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=85.16 E-value=1.1 Score=34.11 Aligned_cols=77 Identities=10% Similarity=0.109 Sum_probs=42.2
Q ss_pred EEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCc----HHHHHhCCCCcccEEEEEECCCceEEEE---e-cCCCC
Q 023089 132 LDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEEL----KTMCHSLHIHVLPFFKFYRGSEGHLCSF---S-CTNAT 203 (287)
Q Consensus 132 V~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~----~~l~~~~~V~~~PTi~~f~~g~g~~~~~---~-~g~~~ 203 (287)
..|+.|+|+.|++....+++. ++.+-.+|+.++ .++.+-.+-.+.+.--+++.. +....- . ....+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~-~~~~~~l~~~~~~~ls 75 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTR-GTPYRKLGLADKDELS 75 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcC-CchHHHcCCccccCCC
Confidence 568899999999998777664 455666666542 223322232333333333221 111110 0 13566
Q ss_pred HHHHHHHHHHh
Q 023089 204 IKKFKDALAKH 214 (287)
Q Consensus 204 ~~~l~~~i~~~ 214 (287)
.+++.++|.++
T Consensus 76 ~~e~~~~l~~~ 86 (105)
T cd02977 76 DEEALELMAEH 86 (105)
T ss_pred HHHHHHHHHhC
Confidence 78888888776
No 247
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=84.97 E-value=0.32 Score=37.14 Aligned_cols=59 Identities=15% Similarity=0.035 Sum_probs=37.3
Q ss_pred cccCCCCCe-eeeeeecCCC---cccc-ccccccccccCCceeeeccCCeeeecCCCccc-cccccCCceee
Q 023089 20 FPSSKDKSI-VGFCSSRAPP---SQVR-VLTSKSISKILPAFSIHFKGQSLAVSDHKSLT-LWHVKAPNKFS 85 (287)
Q Consensus 20 ~~a~~~k~~-~~f~~id~~~---~~~~-~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~-~~~~~~i~~f~ 85 (287)
.+|+++++. +.|+.+|.+. ..+. .+++. .+|++.+....+...+.++ + ..+.+++..|+
T Consensus 45 ~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~----~~Pti~~f~~~~~~~~~y~---g~~~~~~~l~~f~ 109 (109)
T cd02993 45 ELAEKLAGSNVKVAKFNADGEQREFAKEELQLK----SFPTILFFPKNSRQPIKYP---SEQRDVDSLLMFV 109 (109)
T ss_pred HHHHHhccCCeEEEEEECCccchhhHHhhcCCC----cCCEEEEEcCCCCCceecc---CCCCCHHHHHhhC
Confidence 578888875 9999999883 2333 57775 5999986654333333332 2 24666666663
No 248
>PRK09301 circadian clock protein KaiB; Provisional
Probab=84.95 E-value=3.3 Score=31.70 Aligned_cols=62 Identities=5% Similarity=0.001 Sum_probs=51.5
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhC-CC-eEEEEEEccCcHHHHHhCCCCcccEEEEE
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELN-PN-AIFLKVNYEELKTMCHSLHIHVLPFFKFY 187 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~-~~-v~~~~vd~~~~~~l~~~~~V~~~PTi~~f 187 (287)
....+|=.|.|..-+..++....+.++.+.+ ++ +.+=-||+.++|++++.++|-.+||++=-
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~ 67 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKI 67 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhc
Confidence 3466777788888889999888898888764 33 77888999999999999999999997644
No 249
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=84.51 E-value=17 Score=28.17 Aligned_cols=100 Identities=10% Similarity=0.151 Sum_probs=70.4
Q ss_pred HhHHHHHHHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHhC---CCeEEEEEEccCcHHHHH----hCCCC-cccEEEE
Q 023089 115 AQELVDALRNGGDRLVILDFYSPGCGGCKSLHPKICQLAELN---PNAIFLKVNYEELKTMCH----SLHIH-VLPFFKF 186 (287)
Q Consensus 115 ~~~f~~~i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~---~~v~~~~vd~~~~~~l~~----~~~V~-~~PTi~~ 186 (287)
.++..+.-..+-++..++-|--+--+.-.++.+.++++|+.+ +++.|+-||-++.|-+.. .|+|. .-|.|-+
T Consensus 8 ~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGV 87 (120)
T cd03074 8 PENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGV 87 (120)
T ss_pred HHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceee
Confidence 344444443445678889999999999999999999999986 459999999999886654 34543 2488877
Q ss_pred EECCCceEEEEec----CCCCHHHHHHHHHHh
Q 023089 187 YRGSEGHLCSFSC----TNATIKKFKDALAKH 214 (287)
Q Consensus 187 f~~g~g~~~~~~~----g~~~~~~l~~~i~~~ 214 (287)
..-....-+.+.. ...+.++|.+||+..
T Consensus 88 V~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 88 VNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred EecccccceeEecccccccCcHHHHHHHHHhh
Confidence 7433323333322 236789999999853
No 250
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=84.46 E-value=0.48 Score=35.94 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=32.7
Q ss_pred CeeeeeeecCC--CccccccccccccccCCceeeeccCC--eeeecCCCccccccccCCcee
Q 023089 27 SIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQ--SLAVSDHKSLTLWHVKAPNKF 84 (287)
Q Consensus 27 ~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~--~~ky~~~~~~~~~~~~~i~~f 84 (287)
+.+.|+.+|.+ ...++.||+. .+|++.+...+. ..+|. +..+.+.|.+|
T Consensus 55 ~~~~~~~vd~d~~~~l~~~~~v~----~~Ptl~~~~~g~~~~~~~~-----g~~~~~~l~~f 107 (108)
T cd02996 55 GKVVWGKVDCDKESDIADRYRIN----KYPTLKLFRNGMMMKREYR-----GQRSVEALAEF 107 (108)
T ss_pred CcEEEEEEECCCCHHHHHhCCCC----cCCEEEEEeCCcCcceecC-----CCCCHHHHHhh
Confidence 46999999999 5567788885 599998665332 23333 34455666655
No 251
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=84.45 E-value=0.23 Score=37.50 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=37.0
Q ss_pred cccCCCCCeeeeeeecCC---CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCcee
Q 023089 20 FPSSKDKSIVGFCSSRAP---PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKF 84 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~---~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f 84 (287)
.+|++|++ +.|+.+|.+ ...++.+++. .+|++.+.+.+...+|. +..+.+.+.+|
T Consensus 42 ~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~----~~PT~~lf~~g~~~~~~-----G~~~~~~l~~f 99 (100)
T cd02999 42 ALSSMFPQ-IRHLAIEESSIKPSLLSRYGVV----GFPTILLFNSTPRVRYN-----GTRTLDSLAAF 99 (100)
T ss_pred HHHHHhcc-CceEEEECCCCCHHHHHhcCCe----ecCEEEEEcCCceeEec-----CCCCHHHHHhh
Confidence 56778876 789999987 4467788885 59999977633222333 44566666665
No 252
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=84.45 E-value=1.4 Score=29.36 Aligned_cols=51 Identities=12% Similarity=0.097 Sum_probs=32.4
Q ss_pred EEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcH--HHHHhCCCCcccEEEE
Q 023089 133 DFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK--TMCHSLHIHVLPFFKF 186 (287)
Q Consensus 133 ~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~--~l~~~~~V~~~PTi~~ 186 (287)
.|+.++|+.|++..-.++...-. +....++..... ++.+..+-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 57889999999988777666433 334444443322 2444567778997754
No 253
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=84.44 E-value=0.43 Score=35.42 Aligned_cols=58 Identities=16% Similarity=0.021 Sum_probs=36.9
Q ss_pred cccCCCCC--eeeeeeecCC-CccccccccccccccCCceeeeccCC-eeeecCCCccccccccCCcee
Q 023089 20 FPSSKDKS--IVGFCSSRAP-PSQVRVLTSKSISKILPAFSIHFKGQ-SLAVSDHKSLTLWHVKAPNKF 84 (287)
Q Consensus 20 ~~a~~~k~--~~~f~~id~~-~~~~~~l~l~~~~~~~p~l~~~~~~~-~~ky~~~~~~~~~~~~~i~~f 84 (287)
.+|+.+++ .+.|+.+|.+ ......+++. .+|++.+...+. ...+.+. ++.+.+.+.+|
T Consensus 42 ~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~----~~Pt~~~~~~~~~~~~~~~~---g~~~~~~l~~f 103 (104)
T cd02995 42 ELAEKLKGDDNVVIAKMDATANDVPSEFVVD----GFPTILFFPAGDKSNPIKYE---GDRTLEDLIKF 103 (104)
T ss_pred HHHHHhcCCCCEEEEEEeCcchhhhhhccCC----CCCEEEEEcCCCcCCceEcc---CCcCHHHHHhh
Confidence 56777776 6999999998 4455667663 699998665332 1222222 45566666655
No 254
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=84.32 E-value=0.24 Score=36.67 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=38.0
Q ss_pred cccCCCCC--eeeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCceee
Q 023089 20 FPSSKDKS--IVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFS 85 (287)
Q Consensus 20 ~~a~~~k~--~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~ 85 (287)
.+|..+++ .+.|+.+|.+ ....+.||+. .+|++.+...++. .+.+. +..+.+.+..|+
T Consensus 37 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~----~~P~~~~~~~~~~-~~~~~---g~~~~~~l~~~i 98 (102)
T TIGR01126 37 KLAKELKGDPDIVLAKVDATAEKDLASRFGVS----GFPTIKFFPKGKK-PVDYE---GGRDLEAIVEFV 98 (102)
T ss_pred HHHHHhccCCceEEEEEEccchHHHHHhCCCC----cCCEEEEecCCCc-ceeec---CCCCHHHHHHHH
Confidence 45667777 7999999998 4566788885 5999986653332 33322 344555555554
No 255
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=83.69 E-value=0.4 Score=34.89 Aligned_cols=39 Identities=8% Similarity=-0.003 Sum_probs=30.2
Q ss_pred cccCCC--CCeeeeeeecCC--CccccccccccccccCCceeeeccC
Q 023089 20 FPSSKD--KSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKG 62 (287)
Q Consensus 20 ~~a~~~--k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~ 62 (287)
.+|+.+ ++.+.|+.+|.+ ....+.+|+. .+|++.+...+
T Consensus 39 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~----~~Pt~~~~~~~ 81 (101)
T cd02961 39 KLAKELKGDGKVVVAKVDCTANNDLCSEYGVR----GYPTIKLFPNG 81 (101)
T ss_pred HHHHHhccCCceEEEEeeccchHHHHHhCCCC----CCCEEEEEcCC
Confidence 456667 688999999998 5677889885 59999877533
No 256
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=83.25 E-value=0.32 Score=42.69 Aligned_cols=58 Identities=14% Similarity=0.032 Sum_probs=43.0
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCceee
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFS 85 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~ 85 (287)
.+|+++++.+.|+.+|.+ +..++.+++. .+|++.+.+.+...+| . .+..+.+.+.+|+
T Consensus 76 ~la~~~~~~v~~~~VD~~~~~~l~~~~~I~----~~PTl~~f~~G~~v~~--~--~G~~s~e~L~~fi 135 (224)
T PTZ00443 76 RLAKALKGQVNVADLDATRALNLAKRFAIK----GYPTLLLFDKGKMYQY--E--GGDRSTEKLAAFA 135 (224)
T ss_pred HHHHHcCCCeEEEEecCcccHHHHHHcCCC----cCCEEEEEECCEEEEe--e--CCCCCHHHHHHHH
Confidence 578899999999999998 4567788885 5999997763333333 2 2456778888887
No 257
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=83.07 E-value=3.1 Score=28.54 Aligned_cols=52 Identities=8% Similarity=0.047 Sum_probs=34.0
Q ss_pred EEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEcc----CcHHHHHhCCCCcccEEEE
Q 023089 132 LDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYE----ELKTMCHSLHIHVLPFFKF 186 (287)
Q Consensus 132 V~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~----~~~~l~~~~~V~~~PTi~~ 186 (287)
..|+.++|+.|+++.-.++...-.| ....++.. ..+++.+...-..+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~---~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDV---PLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCc---eEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 3577899999999988776664333 33445432 2344555556678999865
No 258
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=82.98 E-value=0.48 Score=35.18 Aligned_cols=58 Identities=14% Similarity=0.020 Sum_probs=37.7
Q ss_pred cccCCCC--CeeeeeeecCCC---ccccccccccccccCCceeeeccCCeeeecCCCccccccccCCcee
Q 023089 20 FPSSKDK--SIVGFCSSRAPP---SQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKF 84 (287)
Q Consensus 20 ~~a~~~k--~~~~f~~id~~~---~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f 84 (287)
.++++++ +.+.|+.+|.+. ..++.|++. .+|++.+...++...+.+. +..+.+.+.+|
T Consensus 42 ~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~----~~P~~~~~~~~~~~~~~~~---g~~~~~~l~~~ 104 (105)
T cd02998 42 KLAAVFANEDDVVIAKVDADEANKDLAKKYGVS----GFPTLKFFPKGSTEPVKYE---GGRDLEDLVKF 104 (105)
T ss_pred HHHHHhCCCCCEEEEEEECCCcchhhHHhCCCC----CcCEEEEEeCCCCCccccC---CccCHHHHHhh
Confidence 4566665 569999999884 457788885 5999987653333343332 44566666655
No 259
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=82.78 E-value=8.9 Score=27.02 Aligned_cols=70 Identities=11% Similarity=0.058 Sum_probs=40.7
Q ss_pred EEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCc----HHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHH
Q 023089 132 LDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEEL----KTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKF 207 (287)
Q Consensus 132 V~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~----~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l 207 (287)
..++.++|+.|++..-.+++.. +.+-.+++... +++.+.-+-..+|+++. .+| +. .-+. -..|
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~g-----i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~-~~-~l~e-----s~~I 69 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELE-----LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNT-GV-QMFE-----SADI 69 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcC-----CcEEEEECCCChHHHHHHHHhCCCCcccEEEe-CCC-Ce-EEEc-----HHHH
Confidence 4577789999999887666653 33333444332 34433345578998753 222 22 2222 5677
Q ss_pred HHHHHHh
Q 023089 208 KDALAKH 214 (287)
Q Consensus 208 ~~~i~~~ 214 (287)
.++|++.
T Consensus 70 ~~yL~~~ 76 (77)
T cd03041 70 VKYLFKT 76 (77)
T ss_pred HHHHHHh
Confidence 7777653
No 260
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=82.13 E-value=15 Score=29.78 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=51.5
Q ss_pred eEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCC----cccEEEEEECCCceEEEEecCCCCH
Q 023089 129 LVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIH----VLPFFKFYRGSEGHLCSFSCTNATI 204 (287)
Q Consensus 129 ~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~----~~PTi~~f~~g~g~~~~~~~g~~~~ 204 (287)
.-++.|++|.||-|......++. .++.+-.+..++-..+-++++|. +-=|.++ + |..++ |-..+
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~--Gy~vE---GHVPa 93 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--N--GYYVE---GHVPA 93 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--c--CEEEe---ccCCH
Confidence 34788999999999987776662 25676667777777777777764 2233333 3 34433 77889
Q ss_pred HHHHHHHHHh
Q 023089 205 KKFKDALAKH 214 (287)
Q Consensus 205 ~~l~~~i~~~ 214 (287)
+.+..++++.
T Consensus 94 ~aI~~ll~~~ 103 (149)
T COG3019 94 EAIARLLAEK 103 (149)
T ss_pred HHHHHHHhCC
Confidence 9999999865
No 261
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=81.75 E-value=2.8 Score=32.54 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=25.7
Q ss_pred EEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcH
Q 023089 132 LDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK 170 (287)
Q Consensus 132 V~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~ 170 (287)
..|+.++|+.|++....+++- ++.+-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-----GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCceEEEecCCCh
Confidence 358899999999998777662 5667777776543
No 262
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=81.53 E-value=1 Score=35.16 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=36.2
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeeccCCeeeec
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVS 68 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~ 68 (287)
++|++|++.+.|+.+|.+ +..++.+++. ..|++....++.+.+.-
T Consensus 38 ela~~~~~~~~f~kVDVDev~dva~~y~I~----amPtfvffkngkh~~~d 84 (114)
T cd02986 38 KTSHDLSKMASIYLVDVDKVPVYTQYFDIS----YIPSTIFFFNGQHMKVD 84 (114)
T ss_pred HHHHHccCceEEEEEeccccHHHHHhcCce----eCcEEEEEECCcEEEEe
Confidence 688999888999999999 7788999995 48999866555665543
No 263
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=81.10 E-value=2.5 Score=37.02 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=29.4
Q ss_pred cHHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHHHHh
Q 023089 169 LKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 169 ~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
+..++++++|.++||+++- + . .+. |..+.+++.+.|...
T Consensus 204 ~~~~a~~~gv~gTPt~~v~-~---~--~~~-g~~~~~~l~~~i~~~ 242 (244)
T COG1651 204 NYKLAQQLGVNGTPTFIVN-G---K--LVP-GLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHHhcCCCcCCeEEEC-C---e--eec-CCCCHHHHHHHHHHh
Confidence 4467788999999999885 2 2 343 777799999988765
No 264
>PRK10996 thioredoxin 2; Provisional
Probab=80.53 E-value=0.46 Score=38.23 Aligned_cols=58 Identities=7% Similarity=-0.015 Sum_probs=38.5
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCceee
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFS 85 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~ 85 (287)
.+++++++.+.|+.+|.+ +..++.+|+. .+|++.+.. .+....... +..+.+.+.+|+
T Consensus 76 ~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~----~~Ptlii~~-~G~~v~~~~---G~~~~e~l~~~l 135 (139)
T PRK10996 76 DVAAERSGKVRFVKVNTEAERELSARFRIR----SIPTIMIFK-NGQVVDMLN---GAVPKAPFDSWL 135 (139)
T ss_pred HHHHHhCCCeEEEEEeCCCCHHHHHhcCCC----ccCEEEEEE-CCEEEEEEc---CCCCHHHHHHHH
Confidence 477788888999999999 5677889885 599998764 333332221 333444455444
No 265
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=80.39 E-value=3.9 Score=28.22 Aligned_cols=50 Identities=8% Similarity=0.018 Sum_probs=29.4
Q ss_pred EEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEE
Q 023089 133 DFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFK 185 (287)
Q Consensus 133 ~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~ 185 (287)
.++.++|++|++..-.+....-.| ....++........+..+-..+|++.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~~---~~~~~~~~~~~~~~~~~~~~~vP~L~ 52 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIPV---EQIILQNDDEATPIRMIGAKQVPILE 52 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCCe---EEEECCCCchHHHHHhcCCCccCEEE
Confidence 477899999999887665553322 33334433322223344456788874
No 266
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=80.30 E-value=5.2 Score=27.63 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=34.3
Q ss_pred EEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccC----cHHHHHhCCCCcccEEE
Q 023089 132 LDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE----LKTMCHSLHIHVLPFFK 185 (287)
Q Consensus 132 V~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~----~~~l~~~~~V~~~PTi~ 185 (287)
..|+.++|+.|++..-.++...-. +....+|..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 358899999999888777665433 3444555422 35565555677899985
No 267
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=80.14 E-value=13 Score=25.95 Aligned_cols=70 Identities=10% Similarity=0.050 Sum_probs=47.3
Q ss_pred EECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccC-cHHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHHH
Q 023089 134 FYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE-LKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALA 212 (287)
Q Consensus 134 FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~-~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~ 212 (287)
++.++|+.|++..=.++...- .+.+..++..+ .+.+.+...-..+|++. .+| .++. +-..|.++|+
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g--~~l~------dS~~I~~yL~ 68 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDG--EVLT------DSAAIIEYLE 68 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETT--EEEE------SHHHHHHHHH
T ss_pred CCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE--ECC--EEEe------CHHHHHHHHH
Confidence 788999999998866554432 24555666554 35566667788999997 453 3332 3578889998
Q ss_pred HhcC
Q 023089 213 KHGT 216 (287)
Q Consensus 213 ~~~~ 216 (287)
++..
T Consensus 69 ~~~~ 72 (75)
T PF13417_consen 69 ERYP 72 (75)
T ss_dssp HHST
T ss_pred HHcC
Confidence 8743
No 268
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=79.83 E-value=8.7 Score=30.74 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=35.5
Q ss_pred cCcHHHHHhCCCCcccEEEEEECCC----------ceEEEEecCCCCHHHHHHHHHHhc
Q 023089 167 EELKTMCHSLHIHVLPFFKFYRGSE----------GHLCSFSCTNATIKKFKDALAKHG 215 (287)
Q Consensus 167 ~~~~~l~~~~~V~~~PTi~~f~~g~----------g~~~~~~~g~~~~~~l~~~i~~~~ 215 (287)
.-+|.+.++|+|+.+|++++.+++. ....... |..+++.-.+.+.+.+
T Consensus 58 ~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~-Gdvsl~~ALe~ia~~g 115 (130)
T TIGR02742 58 QIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVY-GNVSLKGALEKMAQDG 115 (130)
T ss_pred EEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEE-ecccHHHHHHHHHHhC
Confidence 3478899999999999999997652 0122333 8888888888887654
No 269
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=79.81 E-value=0.38 Score=37.00 Aligned_cols=58 Identities=14% Similarity=0.061 Sum_probs=38.4
Q ss_pred cccCCCCC-eeeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCceee
Q 023089 20 FPSSKDKS-IVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFS 85 (287)
Q Consensus 20 ~~a~~~k~-~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~ 85 (287)
.+++++++ ++.|+.+|.+ +..++.+|+. .+|++.+.. .+...... .+..+.+.+.+|+
T Consensus 48 ~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~----~~Pt~~i~~-~g~~~~~~---~G~~~~~~l~~~i 108 (111)
T cd02963 48 EVIQELEPLGVGIATVNAGHERRLARKLGAH----SVPAIVGII-NGQVTFYH---DSSFTKQHVVDFV 108 (111)
T ss_pred HHHHHHHhcCceEEEEeccccHHHHHHcCCc----cCCEEEEEE-CCEEEEEe---cCCCCHHHHHHHH
Confidence 67788876 4999999988 5677888885 599998665 33332221 1344555566554
No 270
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=79.65 E-value=7.9 Score=34.50 Aligned_cols=59 Identities=10% Similarity=-0.040 Sum_probs=40.8
Q ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEEC
Q 023089 125 GGDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRG 189 (287)
Q Consensus 125 ~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~ 189 (287)
..+|+.+++..+.||+.|...+=.+--...+|.++.+...-.+.. -.--.+||+.|...
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~~------d~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDPY------DNYPNTPTLIFNNY 114 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCcc------cCCCCCCeEEEecC
Confidence 478999999999999999988766666667777764333222221 11247899888744
No 271
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=79.58 E-value=0.79 Score=36.80 Aligned_cols=37 Identities=5% Similarity=-0.201 Sum_probs=31.2
Q ss_pred cccCCCC-CeeeeeeecCC--CccccccccccccccCCceeeec
Q 023089 20 FPSSKDK-SIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHF 60 (287)
Q Consensus 20 ~~a~~~k-~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~ 60 (287)
++|++|. +++.|+.+|.+ ...+..||+.+ +|+|++..
T Consensus 60 ELa~e~~~~~v~~akVDiD~~~~LA~~fgV~s----iPTLl~Fk 99 (132)
T PRK11509 60 ELLREFPDYTWQVAIADLEQSEAIGDRFGVFR----FPATLVFT 99 (132)
T ss_pred HHHHHhcCCceEEEEEECCCCHHHHHHcCCcc----CCEEEEEE
Confidence 7899998 45999999999 66788999964 99998664
No 272
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=79.52 E-value=0.53 Score=34.51 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=29.4
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeec
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHF 60 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~ 60 (287)
.+++++.+++.|+.+|.+ ....+.||+. .+|++.+..
T Consensus 38 ~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~----~~P~~~~~~ 76 (101)
T TIGR01068 38 ELAKEYEGKVKFVKLNVDENPDIAAKYGIR----SIPTLLLFK 76 (101)
T ss_pred HHHHHhcCCeEEEEEECCCCHHHHHHcCCC----cCCEEEEEe
Confidence 466678888999999999 4456788885 599998775
No 273
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=79.41 E-value=2.9 Score=32.20 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=42.2
Q ss_pred EEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcH----HHHHhCCCCcccEEEEEECCCceEEE---Ee--cCCC
Q 023089 132 LDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK----TMCHSLHIHVLPFFKFYRGSEGHLCS---FS--CTNA 202 (287)
Q Consensus 132 V~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~----~l~~~~~V~~~PTi~~f~~g~g~~~~---~~--~g~~ 202 (287)
..|+.|+|+.|++....+++- ++.|-.+|+.+++ ++.+-.+..+.|..-+++... .... .. ....
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~-~~~~~l~~~~~~~~~ 75 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSG-KSYRELGLKDKLPSL 75 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCC-chHHhCCcccccccC
Confidence 468899999999988777653 5666667765433 222222333445444553321 1111 10 0123
Q ss_pred CHHHHHHHHHHh
Q 023089 203 TIKKFKDALAKH 214 (287)
Q Consensus 203 ~~~~l~~~i~~~ 214 (287)
+.+++.+.|.++
T Consensus 76 s~~e~~~~l~~~ 87 (111)
T cd03036 76 SEEEALELLSSD 87 (111)
T ss_pred CHHHHHHHHHhC
Confidence 556777777665
No 274
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=78.99 E-value=2.7 Score=32.18 Aligned_cols=32 Identities=9% Similarity=0.107 Sum_probs=22.7
Q ss_pred EEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccC
Q 023089 132 LDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE 168 (287)
Q Consensus 132 V~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~ 168 (287)
..|+.|||+.|++....+++- ++.+-.+|..+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~ 33 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRK 33 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEeccc
Confidence 568899999999988766554 45555555543
No 275
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=78.48 E-value=20 Score=27.77 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHh---CCCeEEEEEEccCcHHHHHhCCCCcccEEEEEEC
Q 023089 144 SLHPKICQLAEL---NPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRG 189 (287)
Q Consensus 144 ~l~p~~~~la~~---~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~ 189 (287)
.+.+....+.+- .+.. .++.-+|.+.++|+|+.+||+++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 555555554444 3322 33344688899999999999999876
No 276
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=78.07 E-value=3.9 Score=32.61 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=25.1
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcH
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELK 170 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~ 170 (287)
+..|+.|||+.|++....+++- ++.+-.+|+.+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCCh
Confidence 4568899999999988666544 5666667765543
No 277
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=77.87 E-value=0.58 Score=34.80 Aligned_cols=42 Identities=10% Similarity=-0.034 Sum_probs=32.1
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeeccCCeee
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLA 66 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~k 66 (287)
++++++++++.|+.+|.+ +..++.+|+. .+|++.+.. .+...
T Consensus 37 ~l~~~~~~~v~~~~id~d~~~~l~~~~~v~----~vPt~~i~~-~g~~v 80 (97)
T cd02949 37 KVIDEFDGAVHFVEIDIDEDQEIAEAAGIM----GTPTVQFFK-DKELV 80 (97)
T ss_pred HHHHHhCCceEEEEEECCCCHHHHHHCCCe----eccEEEEEE-CCeEE
Confidence 577888888999999998 4567788885 599999775 34443
No 278
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=77.07 E-value=13 Score=33.34 Aligned_cols=90 Identities=16% Similarity=0.272 Sum_probs=59.1
Q ss_pred CCCeEEEEEECCCChh-HHHH----HHHHHHHHHhCCC---eEEEEEEccC--------------------------cHH
Q 023089 126 GDRLVILDFYSPGCGG-CKSL----HPKICQLAELNPN---AIFLKVNYEE--------------------------LKT 171 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~-Ck~l----~p~~~~la~~~~~---v~~~~vd~~~--------------------------~~~ 171 (287)
.++.+|++|.-+.||. |=.. ...++++..+..- =.|+.+|-+. ...
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 4899999999999974 5433 3333333333221 1577777521 235
Q ss_pred HHHhCCCCccc-------------EEEEE-ECCCceEEEEecCCCCHHHHHHHHHHhc
Q 023089 172 MCHSLHIHVLP-------------FFKFY-RGSEGHLCSFSCTNATIKKFKDALAKHG 215 (287)
Q Consensus 172 l~~~~~V~~~P-------------Ti~~f-~~g~g~~~~~~~g~~~~~~l~~~i~~~~ 215 (287)
+|++|.|.--+ |+++| -+-+|+.+.|.+-.++.+++.+-|.++.
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v 275 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHV 275 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHH
Confidence 77777765333 45555 4556889999877899999999988774
No 279
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=74.52 E-value=6.1 Score=27.15 Aligned_cols=51 Identities=6% Similarity=0.008 Sum_probs=32.3
Q ss_pred EEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccC-cHHHHHhCCCCcccEEE
Q 023089 132 LDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE-LKTMCHSLHIHVLPFFK 185 (287)
Q Consensus 132 V~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~-~~~l~~~~~V~~~PTi~ 185 (287)
..|+.++|+.|++..-.++...-.| ....+|... .+++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~---~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSV---EIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCcc---EEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 4578899999999887765554333 334455433 23454545667899764
No 280
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.09 E-value=8.1 Score=33.88 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=32.7
Q ss_pred HHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHHHHhcCCCC
Q 023089 171 TMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKHGTDRC 219 (287)
Q Consensus 171 ~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~~~~~ 219 (287)
..+++.||+++||++| +++ . ... |..+.+.|...|++..+...
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~-~--~V~-Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGK-Y--AVS-GAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHCCCccCceEEE--cCc-E--eec-CCCCHHHHHHHHHHHHhccc
Confidence 3567899999999999 432 2 233 89999999999998865543
No 281
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=73.85 E-value=1.2 Score=33.09 Aligned_cols=57 Identities=9% Similarity=-0.056 Sum_probs=35.9
Q ss_pred cccCCCCC-eeeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCceee
Q 023089 20 FPSSKDKS-IVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFS 85 (287)
Q Consensus 20 ~~a~~~k~-~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~ 85 (287)
.+|+.+++ .+.|+.+|.+ +..++.+++. .+|++.+...+...+|. +..+.+.+.+|+
T Consensus 40 ~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~----~~Pt~~~~~~g~~~~~~-----G~~~~~~l~~~i 99 (101)
T cd02994 40 EFADWSDDLGINVAKVDVTQEPGLSGRFFVT----ALPTIYHAKDGVFRRYQ-----GPRDKEDLISFI 99 (101)
T ss_pred HHHHhhccCCeEEEEEEccCCHhHHHHcCCc----ccCEEEEeCCCCEEEec-----CCCCHHHHHHHH
Confidence 35566664 5999999998 4566788885 59999865422222332 344556665554
No 282
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=71.65 E-value=7 Score=34.11 Aligned_cols=38 Identities=13% Similarity=0.284 Sum_probs=30.0
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEE
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLK 163 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~ 163 (287)
..+..++.|+..-|++|+...|.+++.....+++++..
T Consensus 83 ~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~ 120 (244)
T COG1651 83 YAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVL 120 (244)
T ss_pred CCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEE
Confidence 34789999999999999999999988666666543333
No 283
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=70.04 E-value=9.6 Score=29.43 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=24.3
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCc
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEEL 169 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~ 169 (287)
+..|+.++|+.|++....+++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCC
Confidence 3467889999999988777663 455666666543
No 284
>PRK12559 transcriptional regulator Spx; Provisional
Probab=69.94 E-value=7.6 Score=30.98 Aligned_cols=33 Identities=9% Similarity=0.289 Sum_probs=23.2
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccC
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE 168 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~ 168 (287)
+..|+.|+|+.|++....+++- ++.+-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeC
Confidence 4578899999999987666543 45555556544
No 285
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=69.71 E-value=35 Score=32.74 Aligned_cols=89 Identities=10% Similarity=0.041 Sum_probs=61.8
Q ss_pred CCCCeEEEEEECCCChhHHHHH-HHHH-HHHHh-C-CCeEEEEEEccC--cHHHHHhCCCCcccEEEEEECCCceEEEEe
Q 023089 125 GGDRLVILDFYSPGCGGCKSLH-PKIC-QLAEL-N-PNAIFLKVNYEE--LKTMCHSLHIHVLPFFKFYRGSEGHLCSFS 198 (287)
Q Consensus 125 ~~~k~vlV~FyapWC~~Ck~l~-p~~~-~la~~-~-~~v~~~~vd~~~--~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~ 198 (287)
..++.+||-|-+.--....+|. -.|. ..-.. . ..+..++|+... ...+..-|.+-.+|+++|+.. .|.++...
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~-sGtpLevi 94 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGF-SGTPLEVI 94 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecC-CCceeEEe
Confidence 4577888888888877777776 2332 22222 2 236677777653 345667789999999999854 46777766
Q ss_pred cCCCCHHHHHHHHHHh
Q 023089 199 CTNATIKKFKDALAKH 214 (287)
Q Consensus 199 ~g~~~~~~l~~~i~~~ 214 (287)
.|....++|..-|++.
T Consensus 95 tg~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 95 TGFVTADELASSIEKV 110 (506)
T ss_pred eccccHHHHHHHHHHH
Confidence 6888899998888764
No 286
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=69.66 E-value=0.99 Score=35.40 Aligned_cols=51 Identities=12% Similarity=0.029 Sum_probs=36.1
Q ss_pred eeeeeeecCC-------CccccccccccccccCCceeeeccCC---eeeecCCCccc-cccccCCceee
Q 023089 28 IVGFCSSRAP-------PSQVRVLTSKSISKILPAFSIHFKGQ---SLAVSDHKSLT-LWHVKAPNKFS 85 (287)
Q Consensus 28 ~~~f~~id~~-------~~~~~~l~l~~~~~~~p~l~~~~~~~---~~ky~~~~~~~-~~~~~~i~~f~ 85 (287)
.+.++.||++ ..+++.+|++. ..+|+|.++.++. ...|. + +.+.+.|.+|+
T Consensus 51 ~v~lakVd~~d~~~~~~~~L~~~y~I~~--~gyPTl~lF~~g~~~~~~~Y~-----G~~r~~~~lv~~v 112 (116)
T cd03007 51 DLLVAEVGIKDYGEKLNMELGERYKLDK--ESYPVIYLFHGGDFENPVPYS-----GADVTVDALQRFL 112 (116)
T ss_pred ceEEEEEecccccchhhHHHHHHhCCCc--CCCCEEEEEeCCCcCCCccCC-----CCcccHHHHHHHH
Confidence 4999999994 34678889974 3699998765332 23454 4 37888888887
No 287
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=69.24 E-value=0.94 Score=34.00 Aligned_cols=38 Identities=8% Similarity=-0.133 Sum_probs=28.3
Q ss_pred cccCCCCCeeeeeeecCC------CccccccccccccccCCceeeecc
Q 023089 20 FPSSKDKSIVGFCSSRAP------PSQVRVLTSKSISKILPAFSIHFK 61 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~------~~~~~~l~l~~~~~~~p~l~~~~~ 61 (287)
.+++.+++.+.|+.+|.+ ...++.+|+. .+|++.+.+.
T Consensus 38 ~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~----~~Pti~~~~~ 81 (104)
T cd02953 38 EVQAALKKDVVLLRADWTKNDPEITALLKRFGVF----GPPTYLFYGP 81 (104)
T ss_pred HHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCC----CCCEEEEECC
Confidence 466777778999999976 2345678875 5999997763
No 288
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=69.23 E-value=5.6 Score=31.40 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=26.9
Q ss_pred cHHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHH
Q 023089 169 LKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 169 ~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i 211 (287)
+..++.+++|.++||+++ +| +. +. |..+.+.|.+.|
T Consensus 118 ~~~~~~~~gi~gtPt~~v--~g--~~--~~-G~~~~~~l~~~i 153 (154)
T cd03023 118 NRQLARALGITGTPAFII--GD--TV--IP-GAVPADTLKEAI 153 (154)
T ss_pred HHHHHHHcCCCcCCeEEE--CC--EE--ec-CCCCHHHHHHHh
Confidence 346678899999999776 43 32 33 888888888776
No 289
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=69.06 E-value=18 Score=26.32 Aligned_cols=53 Identities=8% Similarity=0.009 Sum_probs=33.9
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCc-HHHHHhCCCCcccEEEE
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEEL-KTMCHSLHIHVLPFFKF 186 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~-~~l~~~~~V~~~PTi~~ 186 (287)
+..|+.+.|+.|++..-.++...-. +.+..++.... +++.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~---~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIP---HEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 4557788899999887666554333 34455555433 33555556778998864
No 290
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=68.90 E-value=8.2 Score=33.12 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=33.1
Q ss_pred HHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHHHHhc
Q 023089 170 KTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKHG 215 (287)
Q Consensus 170 ~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~ 215 (287)
..+++++++.+|||+++-.+|+-.++.-..-..+.+.+..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 4578899999999999999865333332111567788888887764
No 291
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=68.47 E-value=1.2 Score=33.53 Aligned_cols=57 Identities=12% Similarity=-0.028 Sum_probs=37.1
Q ss_pred cccCCCCC---eeeeeeecCC--CccccccccccccccCCceeeeccCCeeeecCCCccccccccCCceee
Q 023089 20 FPSSKDKS---IVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFS 85 (287)
Q Consensus 20 ~~a~~~k~---~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~ 85 (287)
.+|+++++ .+.++.+|.+ +..++.+++. .+|++.+..++...+|. +..+.+.+.+|+
T Consensus 39 ~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~----~~Pt~~l~~~~~~~~~~-----G~~~~~~l~~~~ 100 (104)
T cd03000 39 EVGAELKSSGSPVRVGKLDATAYSSIASEFGVR----GYPTIKLLKGDLAYNYR-----GPRTKDDIVEFA 100 (104)
T ss_pred HHHHHHHhcCCcEEEEEEECccCHhHHhhcCCc----cccEEEEEcCCCceeec-----CCCCHHHHHHHH
Confidence 46666643 4889999987 5567788886 49999877533223332 345666666665
No 292
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=68.14 E-value=2.2 Score=31.27 Aligned_cols=52 Identities=10% Similarity=0.037 Sum_probs=41.7
Q ss_pred EECCCChhHHHHHHHHHHHHHhC-C-CeEEEEEEccCcHHHHHhCCCCcccEEE
Q 023089 134 FYSPGCGGCKSLHPKICQLAELN-P-NAIFLKVNYEELKTMCHSLHIHVLPFFK 185 (287)
Q Consensus 134 FyapWC~~Ck~l~p~~~~la~~~-~-~v~~~~vd~~~~~~l~~~~~V~~~PTi~ 185 (287)
|-+..-+..++....+..+.+.+ + .+.+--||+.++|++++.++|-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 33444556677788888888874 3 3888899999999999999999999975
No 293
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=66.67 E-value=2.9 Score=32.27 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=29.3
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeec
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHF 60 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~ 60 (287)
.+|++|.+ +.|+.||++ +..++.|++. ..|++++..
T Consensus 46 ~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~----~vPt~l~fk 83 (113)
T cd02989 46 ILAKKHLE-TKFIKVNAEKAPFLVEKLNIK----VLPTVILFK 83 (113)
T ss_pred HHHHHcCC-CEEEEEEcccCHHHHHHCCCc----cCCEEEEEE
Confidence 57788876 899999999 5578889985 599998665
No 294
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=66.67 E-value=2 Score=34.67 Aligned_cols=43 Identities=12% Similarity=0.046 Sum_probs=30.7
Q ss_pred cccCCCCCeeeeeeecCCC----ccccccccccccccCCceeeeccCCeee
Q 023089 20 FPSSKDKSIVGFCSSRAPP----SQVRVLTSKSISKILPAFSIHFKGQSLA 66 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~~----~~~~~l~l~~~~~~~p~l~~~~~~~~~k 66 (287)
.++++|++++.|+.||.+. ..++.|++. .+|++.+.+..+...
T Consensus 44 ~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~----~iPt~v~~~~~G~~v 90 (142)
T cd02950 44 KLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVD----GIPHFVFLDREGNEE 90 (142)
T ss_pred HHHHHhccCeeEEEEEcCCcccHHHHHHcCCC----CCCEEEEECCCCCEE
Confidence 4677888888888888772 356788885 599999775334333
No 295
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.43 E-value=13 Score=26.85 Aligned_cols=54 Identities=17% Similarity=0.072 Sum_probs=35.0
Q ss_pred EEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccC--------------cHHH--HHhCCCCcccEEEEEECCC
Q 023089 132 LDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE--------------LKTM--CHSLHIHVLPFFKFYRGSE 191 (287)
Q Consensus 132 V~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~--------------~~~l--~~~~~V~~~PTi~~f~~g~ 191 (287)
+.|+|--||.|..+...++++. +.+-.|+++. .+++ ++..+--|+|.+++= +|+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~-----v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~-d~~ 74 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN-----VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTD-DGK 74 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC-----CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeC-CCc
Confidence 6799999999988777777664 3333444432 2221 355677799998764 543
No 296
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=66.23 E-value=2.1 Score=31.68 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=25.8
Q ss_pred cccCCCC--CeeeeeeecCCC----ccccccccccccccCCceeeec
Q 023089 20 FPSSKDK--SIVGFCSSRAPP----SQVRVLTSKSISKILPAFSIHF 60 (287)
Q Consensus 20 ~~a~~~k--~~~~f~~id~~~----~~~~~l~l~~~~~~~p~l~~~~ 60 (287)
.++++++ +.+.|+.+|.+. ...+.+|+. .+|++.+..
T Consensus 41 ~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~----~~Pt~~~~~ 83 (104)
T cd02997 41 KAATELKEDGKGVLAAVDCTKPEHDALKEEYNVK----GFPTFKYFE 83 (104)
T ss_pred HHHHHHhhCCceEEEEEECCCCccHHHHHhCCCc----cccEEEEEe
Confidence 4455665 668899999883 345677775 599988665
No 297
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=63.05 E-value=3.9 Score=31.44 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=30.9
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeec
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHF 60 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~ 60 (287)
++|.+|.+ +.|+.+|.| ...++.+++. ..|+|.+..
T Consensus 45 ~La~~y~~-v~Flkvdvde~~~~~~~~~V~----~~PTf~f~k 82 (106)
T KOG0907|consen 45 KLAEKYPD-VVFLKVDVDELEEVAKEFNVK----AMPTFVFYK 82 (106)
T ss_pred HHHHHCCC-CEEEEEecccCHhHHHhcCce----EeeEEEEEE
Confidence 78999999 999999999 6678888886 499998653
No 298
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=63.03 E-value=2.3 Score=41.40 Aligned_cols=58 Identities=16% Similarity=0.047 Sum_probs=39.5
Q ss_pred cccCCCCCe-eeeeeecCCC---ccc-cccccccccccCCceeeeccCC--eeeecCCCccccccccCCceee
Q 023089 20 FPSSKDKSI-VGFCSSRAPP---SQV-RVLTSKSISKILPAFSIHFKGQ--SLAVSDHKSLTLWHVKAPNKFS 85 (287)
Q Consensus 20 ~~a~~~k~~-~~f~~id~~~---~~~-~~l~l~~~~~~~p~l~~~~~~~--~~ky~~~~~~~~~~~~~i~~f~ 85 (287)
.+|++|+++ +.|+.||.+. ..+ +.+++. .+|++.++.++. ..+|.. +..+.+++..|+
T Consensus 395 elA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~----~~PTii~Fk~g~~~~~~Y~~----g~R~~e~L~~Fv 459 (463)
T TIGR00424 395 ELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG----SFPTILFFPKHSSRPIKYPS----EKRDVDSLMSFV 459 (463)
T ss_pred HHHHHhccCCcEEEEEECCCCccHHHHHHcCCC----ccceEEEEECCCCCceeCCC----CCCCHHHHHHHH
Confidence 578888876 8899898882 233 468885 599998665433 235542 346778888876
No 299
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=60.46 E-value=5.2 Score=29.15 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=29.2
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeec
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHF 60 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~ 60 (287)
.+++++.+.+.|+.+|.+ +..++.+|+. .+|++.+..
T Consensus 38 ~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~----~~Pt~~~~~ 76 (97)
T cd02984 38 ELAKEAFPSVLFLSIEAEELPEISEKFEIT----AVPTFVFFR 76 (97)
T ss_pred HHHHHhCCceEEEEEccccCHHHHHhcCCc----cccEEEEEE
Confidence 466676678999999999 4567889885 599998775
No 300
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.37 E-value=3.6 Score=37.48 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=31.8
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeee
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIH 59 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~ 59 (287)
+++.+|+|++.++.||.| +.++..||+.. +|++.-+
T Consensus 67 kla~~~~G~f~LakvN~D~~p~vAaqfgiqs----IPtV~af 104 (304)
T COG3118 67 KLAAEYKGKFKLAKVNCDAEPMVAAQFGVQS----IPTVYAF 104 (304)
T ss_pred HHHHHhCCceEEEEecCCcchhHHHHhCcCc----CCeEEEe
Confidence 789999999999999999 77899999975 9999633
No 301
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=60.32 E-value=2.4 Score=32.61 Aligned_cols=53 Identities=8% Similarity=0.012 Sum_probs=42.0
Q ss_pred eeeeeeecCC-Cccc-cccccccccccCCceeeeccCCeeeecCCCccccccccCCceee
Q 023089 28 IVGFCSSRAP-PSQV-RVLTSKSISKILPAFSIHFKGQSLAVSDHKSLTLWHVKAPNKFS 85 (287)
Q Consensus 28 ~~~f~~id~~-~~~~-~~l~l~~~~~~~p~l~~~~~~~~~ky~~~~~~~~~~~~~i~~f~ 85 (287)
.+.|+..|.+ ...+ .+.||.+ .-|.|.+.++.+..+|.++ ..+++.+++.+|+
T Consensus 57 ~~f~~a~ede~tdsLRDf~nL~d---~~P~LviLDip~r~~~v~~--~eeIT~e~~~~fv 111 (116)
T cd03071 57 LLFFVAGEDDMTDSLRDYTNLPE---AAPLLTILDMSARAKYVMD--VEEITPAIVEAFV 111 (116)
T ss_pred eeeeeeccchHHHHHHHhcCCCc---cCceEEEEeccccceEeCc--hHhcCHHHHHHHH
Confidence 3667777777 3344 4778874 7999999999999999988 4789999999998
No 302
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=59.95 E-value=5.1 Score=32.54 Aligned_cols=34 Identities=6% Similarity=-0.133 Sum_probs=28.2
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCcee
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFS 57 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~ 57 (287)
++|+++++.+.|+.||.| +..+..+++.+ .|+++
T Consensus 47 ~la~~~~~~~~~~kVDVDe~~dla~~y~I~~----~~t~~ 82 (142)
T PLN00410 47 SVAETIKNFAVIYLVDITEVPDFNTMYELYD----PCTVM 82 (142)
T ss_pred HHHHHcCCceEEEEEECCCCHHHHHHcCccC----CCcEE
Confidence 688999999999999999 67888999964 55554
No 303
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=59.87 E-value=48 Score=27.50 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=30.2
Q ss_pred CCCeEEEEEECCCC-hhHHHHHHHHHHHHHh----CCCeEEEEEEcc
Q 023089 126 GDRLVILDFYSPGC-GGCKSLHPKICQLAEL----NPNAIFLKVNYE 167 (287)
Q Consensus 126 ~~k~vlV~FyapWC-~~Ck~l~p~~~~la~~----~~~v~~~~vd~~ 167 (287)
.+|+++|.|.-+.| ..|-.+...+.++.+. ..++.++.|.+|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 58999999999999 6788777666666554 235777777776
No 304
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=59.72 E-value=32 Score=23.23 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=32.3
Q ss_pred EEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEcc----CcHHHHHhCCCCcccEEEE
Q 023089 133 DFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYE----ELKTMCHSLHIHVLPFFKF 186 (287)
Q Consensus 133 ~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~----~~~~l~~~~~V~~~PTi~~ 186 (287)
.|+.++|+.|++..-.++...-. .....+|.. ..+++.+...-..+|++..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIP---YEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 57889999999987776665433 344455542 2244444445668998864
No 305
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=58.88 E-value=16 Score=27.76 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=35.2
Q ss_pred EECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCC--cccEEEEE-ECC
Q 023089 134 FYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIH--VLPFFKFY-RGS 190 (287)
Q Consensus 134 FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~--~~PTi~~f-~~g 190 (287)
||-.+|+-|......+.+.. ....+.|+.+.-....++...+++. ..-+.+.. .+|
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 60 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD-RGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDG 60 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC-CCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCC
Confidence 78999999999998887772 2334777666433444444556654 34444444 443
No 306
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=58.30 E-value=13 Score=30.88 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=24.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCC
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNP 157 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~ 157 (287)
+.+|+-+.|+.|-...+.++++.+.++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 668899999999999999999999984
No 307
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=57.96 E-value=25 Score=30.96 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=38.0
Q ss_pred HHcCCCCeEEEEEECCCChhHHHHHHHHHHHHHh-----CCCeEEEEEEcc
Q 023089 122 LRNGGDRLVILDFYSPGCGGCKSLHPKICQLAEL-----NPNAIFLKVNYE 167 (287)
Q Consensus 122 i~~~~~k~vlV~FyapWC~~Ck~l~p~~~~la~~-----~~~v~~~~vd~~ 167 (287)
+....++.+||-+-..+|..|..-...++.|..+ +++|.|+-||-.
T Consensus 21 m~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 21 MLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred hhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 3445789999999999999999988888887754 568999999964
No 308
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=55.96 E-value=15 Score=30.82 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=27.4
Q ss_pred CcHHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHH
Q 023089 168 ELKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 168 ~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i 211 (287)
++...+.+.||.++||+++ +| +.. .. |..+.+.|.+.|
T Consensus 163 ~~~~~a~~~gv~G~Pt~vv--~g--~~~-~~-G~~~~~~~~~~i 200 (201)
T cd03024 163 ADEARARQLGISGVPFFVF--NG--KYA-VS-GAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHHCCCCcCCEEEE--CC--eEe-ec-CCCCHHHHHHHh
Confidence 3445677899999999988 43 222 23 888888888765
No 309
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=55.58 E-value=20 Score=28.55 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=22.9
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccC
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE 168 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~ 168 (287)
+..|+.|+|+.|++....+++- ++.+-.+|..+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECCC
Confidence 3467889999999977655442 46666666654
No 310
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=53.68 E-value=18 Score=30.94 Aligned_cols=20 Identities=10% Similarity=0.228 Sum_probs=16.2
Q ss_pred HHHHHhCCCCcccEEEEEECCC
Q 023089 170 KTMCHSLHIHVLPFFKFYRGSE 191 (287)
Q Consensus 170 ~~l~~~~~V~~~PTi~~f~~g~ 191 (287)
...+++++|+++||+++ +|+
T Consensus 157 ~~~a~~~gI~gtPtfiI--nGk 176 (207)
T PRK10954 157 EKAAADLQLRGVPAMFV--NGK 176 (207)
T ss_pred HHHHHHcCCCCCCEEEE--CCE
Confidence 45678899999999988 654
No 311
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=53.59 E-value=7.4 Score=29.69 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=28.6
Q ss_pred cccCCCCCeeeeeeecCCC-ccccccccccccccCCceeeec
Q 023089 20 FPSSKDKSIVGFCSSRAPP-SQVRVLTSKSISKILPAFSIHF 60 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~~-~~~~~l~l~~~~~~~p~l~~~~ 60 (287)
.+|++|.+ +.|+.+|++. ..++.+++. .+|++.+..
T Consensus 48 ~la~~~~~-v~f~~vd~~~~~l~~~~~i~----~~Pt~~~f~ 84 (113)
T cd02957 48 ELAAKYPE-TKFVKINAEKAFLVNYLDIK----VLPTLLVYK 84 (113)
T ss_pred HHHHHCCC-cEEEEEEchhhHHHHhcCCC----cCCEEEEEE
Confidence 57888875 8899999994 567788885 599998665
No 312
>PLN02309 5'-adenylylsulfate reductase
Probab=52.34 E-value=4.3 Score=39.47 Aligned_cols=58 Identities=16% Similarity=0.075 Sum_probs=39.8
Q ss_pred cccCCCCCe-eeeeeecCC-C--cccc-ccccccccccCCceeeeccCC--eeeecCCCccccccccCCceee
Q 023089 20 FPSSKDKSI-VGFCSSRAP-P--SQVR-VLTSKSISKILPAFSIHFKGQ--SLAVSDHKSLTLWHVKAPNKFS 85 (287)
Q Consensus 20 ~~a~~~k~~-~~f~~id~~-~--~~~~-~l~l~~~~~~~p~l~~~~~~~--~~ky~~~~~~~~~~~~~i~~f~ 85 (287)
.+|++|++. +.|+.+|++ . ..+. .|++. .+|++.++..+. ..+|.. +..+.+++..|+
T Consensus 389 ~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~----~~PTil~f~~g~~~~v~Y~~----~~R~~~~L~~fv 453 (457)
T PLN02309 389 ELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG----SFPTILLFPKNSSRPIKYPS----EKRDVDSLLSFV 453 (457)
T ss_pred HHHHHhccCCeEEEEEECCCcchHHHHhhCCCc----eeeEEEEEeCCCCCeeecCC----CCcCHHHHHHHH
Confidence 578888765 999999998 2 3343 58885 599998765332 335542 245778888886
No 313
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=51.41 E-value=1.7e+02 Score=25.81 Aligned_cols=91 Identities=12% Similarity=0.051 Sum_probs=54.9
Q ss_pred CCCeEEEEEECCC------ChhHHHHHHHHHHHHHhCC-CeEEEEEEccCcHHHHHh----CCCCc--------------
Q 023089 126 GDRLVILDFYSPG------CGGCKSLHPKICQLAELNP-NAIFLKVNYEELKTMCHS----LHIHV-------------- 180 (287)
Q Consensus 126 ~~k~vlV~FyapW------C~~Ck~l~p~~~~la~~~~-~v~~~~vd~~~~~~l~~~----~~V~~-------------- 180 (287)
=+++|-|.+|.+- -..=+.+...++++++..+ ++.+-.||.+.+++.+++ +||..
T Consensus 23 L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~ 102 (271)
T PF09822_consen 23 LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQIEIVDNGKASIV 102 (271)
T ss_pred CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccceeecccccccce
Confidence 4567777777654 3444555556666666667 699999999877766665 88776
Q ss_pred --ccEEEEEECCCceEEEEec---CCCCHHHHHHHHHHhcC
Q 023089 181 --LPFFKFYRGSEGHLCSFSC---TNATIKKFKDALAKHGT 216 (287)
Q Consensus 181 --~PTi~~f~~g~g~~~~~~~---g~~~~~~l~~~i~~~~~ 216 (287)
++.+++-..++.+.+.+.. ...-..+|...|.+...
T Consensus 103 ~~~~~~~v~~~~~~~~i~~~~~~~~~~~E~~lt~aI~~v~~ 143 (271)
T PF09822_consen 103 TVYGGIVVEYGDREEVIPFLDSMSEFNLEYELTSAIRRVTS 143 (271)
T ss_pred eecCeEEEEECCeEEEeecccccccccHHHHHHHHHHHHhc
Confidence 5665554333333444331 12335566667766543
No 314
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=50.26 E-value=19 Score=29.75 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=25.3
Q ss_pred cHHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHH
Q 023089 169 LKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 169 ~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i 211 (287)
+...+.++||.++||+++ +| + .+. |...++.+.+.|
T Consensus 156 ~~~~a~~~gi~gvPtfvv--~g--~--~~~-G~~~l~~~~~~l 191 (192)
T cd03022 156 NTEEAIARGVFGVPTFVV--DG--E--MFW-GQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHHcCCCcCCeEEE--CC--e--eec-ccccHHHHHHHh
Confidence 345667899999999988 43 3 233 777777776654
No 315
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=48.52 E-value=6.5 Score=27.60 Aligned_cols=35 Identities=14% Similarity=0.029 Sum_probs=27.3
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceee
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSI 58 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~ 58 (287)
.+|+++++.+.++.||.+ ...++.+|+. ..|++.+
T Consensus 23 ~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~----~vPt~~~ 59 (82)
T TIGR00411 23 EVAKEMGDAVEVEYINVMENPQKAMEYGIM----AVPAIVI 59 (82)
T ss_pred HHHHHhcCceEEEEEeCccCHHHHHHcCCc----cCCEEEE
Confidence 456778888999999987 5566788885 4899976
No 316
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=47.66 E-value=28 Score=25.99 Aligned_cols=7 Identities=29% Similarity=0.069 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 023089 116 QELVDAL 122 (287)
Q Consensus 116 ~~f~~~i 122 (287)
++..+.+
T Consensus 65 ~~~~~~~ 71 (114)
T cd02967 65 AEHQRFL 71 (114)
T ss_pred HHHHHHH
Confidence 3333333
No 317
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=47.43 E-value=43 Score=26.81 Aligned_cols=103 Identities=16% Similarity=0.320 Sum_probs=54.5
Q ss_pred CCCeEEeCCHhHHHHHHHcCCCCeEEEEEECCCChhHH-HHHHHHHHHHHh--CCC---eEEEEEEccCcHHHHHhCC--
Q 023089 106 KPNMIEIQSAQELVDALRNGGDRLVILDFYSPGCGGCK-SLHPKICQLAEL--NPN---AIFLKVNYEELKTMCHSLH-- 177 (287)
Q Consensus 106 ~~~v~~i~s~~~f~~~i~~~~~k~vlV~FyapWC~~Ck-~l~p~~~~la~~--~~~---v~~~~vd~~~~~~l~~~~~-- 177 (287)
.....++.+.++.++.+.. ..+.+||.. .+-||--- ..+|-....... -|+ ..|+..|-+.-.. ++.|=
T Consensus 15 ~~Gf~eL~T~e~Vd~~~~~-~~GTtlVvV-NSVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~-aR~yf~~ 91 (136)
T PF06491_consen 15 RAGFEELTTAEEVDEALKN-KEGTTLVVV-NSVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAK-AREYFEP 91 (136)
T ss_dssp TTT-EE--SHHHHHHHHHH---SEEEEEE-E-SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHH-HHHTSTT
T ss_pred HcCccccCCHHHHHHHHhC-CCCcEEEEE-eccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHH-HHHhcCC
Confidence 3456889999999998863 344444443 45687332 345655444332 344 3455555444433 34442
Q ss_pred -CCcccEEEEEECCCceEEEE----ecCCCCHHHHHHHHHH
Q 023089 178 -IHVLPFFKFYRGSEGHLCSF----SCTNATIKKFKDALAK 213 (287)
Q Consensus 178 -V~~~PTi~~f~~g~g~~~~~----~~g~~~~~~l~~~i~~ 213 (287)
--+-|++.+|++| +++.+ .+-+++.+.|.+-|..
T Consensus 92 ~pPSSPS~ALfKdG--elvh~ieRh~IEGr~a~~Ia~~L~~ 130 (136)
T PF06491_consen 92 YPPSSPSIALFKDG--ELVHFIERHHIEGRPAEEIAENLQD 130 (136)
T ss_dssp S---SSEEEEEETT--EEEEEE-GGGTTTS-HHHHHHHHHH
T ss_pred CCCCCchheeeeCC--EEEEEeehhhcCCCCHHHHHHHHHH
Confidence 2367899999995 45544 3457888888776654
No 318
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=47.35 E-value=87 Score=31.32 Aligned_cols=170 Identities=11% Similarity=0.028 Sum_probs=87.6
Q ss_pred CCCCCeeeeeeecCC----CccccccccccccccCCceeeeccC-CeeeecCCCccccccccCCceeeeeehhhhhhhHH
Q 023089 23 SKDKSIVGFCSSRAP----PSQVRVLTSKSISKILPAFSIHFKG-QSLAVSDHKSLTLWHVKAPNKFSINAQASICVSRA 97 (287)
Q Consensus 23 ~~~k~~~~f~~id~~----~~~~~~l~l~~~~~~~p~l~~~~~~-~~~ky~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~ 97 (287)
++++.-+..+.||.- ....+.|++. .+|++.+.--. .+..+...- .+......|.+++....+..
T Consensus 87 ~~W~~vv~vaaVdCA~~~N~~lCRef~V~----~~Ptlryf~~~~~~~~~G~~~-~~~~~~~ei~~~l~~~la~~----- 156 (606)
T KOG1731|consen 87 EKWRPVVRVAAVDCADEENVKLCREFSVS----GYPTLRYFPPDSQNKTDGSDV-SGPVIPSEIRDQLIRTLAEE----- 156 (606)
T ss_pred hcccceeEEEEeeccchhhhhhHhhcCCC----CCceeeecCCccccCcCCCcc-cCCcchhhHHHHHHHHHHHH-----
Confidence 567788899999976 4567899995 59999866411 111121110 01122344444442222211
Q ss_pred HHHHh-hhCCC---CeEEeCCHhHHHHHHHcCCCCeEEEEE-ECCCChhHHHHHHHHHHHHHhC--CCeEEEEEEccCcH
Q 023089 98 MRWWE-KTLKP---NMIEIQSAQELVDALRNGGDRLVILDF-YSPGCGGCKSLHPKICQLAELN--PNAIFLKVNYEELK 170 (287)
Q Consensus 98 ~~~~~-~~~~~---~v~~i~s~~~f~~~i~~~~~k~vlV~F-yapWC~~Ck~l~p~~~~la~~~--~~v~~~~vd~~~~~ 170 (287)
+... ...-| ++.+-++.+++.+.+.. ....+-|-| -.+. .-.++.+.... +++.+..+-.+++-
T Consensus 157 -~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~-~~~yvAiv~e~~~s-------~lg~~~~l~~l~~~~v~vr~~~d~q~~ 227 (606)
T KOG1731|consen 157 -DAQNRYPSWPNFDPLKDTTTLEELDEGIST-TANYVAIVFETEPS-------DLGWANLLNDLPSKQVGVRARLDTQNF 227 (606)
T ss_pred -HhhhcCCCCCCCCCCCCcchHHHHhccccc-ccceeEEEEecCCc-------ccHHHHHHhhccCCCcceEEEecchhc
Confidence 1111 11233 34444455555555432 222333334 3433 12455555554 45555444445544
Q ss_pred HHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHHHHh
Q 023089 171 TMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 171 ~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
.+.+ +++...|+.++|++|+.+.+... ..+-+...+.|.+.
T Consensus 228 ~~~~-l~~~~~~~~llfrnG~~q~l~~~--~~s~~~y~~~I~~~ 268 (606)
T KOG1731|consen 228 PLFG-LKPDNFPLALLFRNGEQQPLWPS--SSSRSAYVKKIDDL 268 (606)
T ss_pred cccc-cCCCCchhhhhhcCCcccccccc--cccHHHHHHHHHHH
Confidence 4555 89999999999999885555433 33333444444443
No 319
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=47.30 E-value=10 Score=28.27 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=28.5
Q ss_pred cccCCCCCe-eeeeeecCC-CccccccccccccccCCceeeec
Q 023089 20 FPSSKDKSI-VGFCSSRAP-PSQVRVLTSKSISKILPAFSIHF 60 (287)
Q Consensus 20 ~~a~~~k~~-~~f~~id~~-~~~~~~l~l~~~~~~~p~l~~~~ 60 (287)
.+++++++. +.|+.+|.+ ...++.+++. .+|++.+..
T Consensus 41 ~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~----~~Pt~~~~~ 79 (102)
T cd02948 41 KIKNELGDDLLHFATAEADTIDTLKRYRGK----CEPTFLFYK 79 (102)
T ss_pred HHHHHcCCCcEEEEEEeCCCHHHHHHcCCC----cCcEEEEEE
Confidence 466778754 789999998 6677889885 499998664
No 320
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=46.31 E-value=9.6 Score=28.55 Aligned_cols=36 Identities=17% Similarity=-0.058 Sum_probs=27.3
Q ss_pred cccCCCCCeeeeeeecCCC-----ccccccccccccccCCceeeec
Q 023089 20 FPSSKDKSIVGFCSSRAPP-----SQVRVLTSKSISKILPAFSIHF 60 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~~-----~~~~~l~l~~~~~~~p~l~~~~ 60 (287)
.+|++| +.+.|+.||.+. ..++.+++. .+|++.+..
T Consensus 39 ~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~----~~Pt~~~~~ 79 (103)
T cd02985 39 KLSRTC-NDVVFLLVNGDENDSTMELCRREKII----EVPHFLFYK 79 (103)
T ss_pred HHHHHC-CCCEEEEEECCCChHHHHHHHHcCCC----cCCEEEEEe
Confidence 567888 668999999982 456778885 599988663
No 321
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=45.99 E-value=54 Score=28.36 Aligned_cols=44 Identities=11% Similarity=0.085 Sum_probs=31.7
Q ss_pred CcHHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHHHHh
Q 023089 168 ELKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 168 ~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
-+|.+.++|+|+.+|++++.... ...... |..++.+-.+.+.+.
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~~--~yD~I~-GNIsl~~ALe~iA~~ 193 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCSQ--GYDIIR-GNLRVGQALEKVAAT 193 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcCC--CCCEEE-ecccHHHHHHHHHhc
Confidence 36888999999999999998542 222233 788887777766653
No 322
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=45.14 E-value=1.5e+02 Score=23.49 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEEEccCcHH----------HHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHHHH
Q 023089 144 SLHPKICQLAELNPNAIFLKVNYEELKT----------MCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAK 213 (287)
Q Consensus 144 ~l~p~~~~la~~~~~v~~~~vd~~~~~~----------l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~ 213 (287)
++...++.|.+ .++.+.+.|...+|. +.+.-|...+|-+++ + |+++... ...+.++|.+|+.-
T Consensus 28 ~~a~~~~~Lk~--~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--d--Geiv~~G-~YPt~eEl~~~~~i 100 (123)
T PF06953_consen 28 RFAADLDWLKE--QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--D--GEIVKTG-RYPTNEELAEWLGI 100 (123)
T ss_dssp HHHHHHHHHHH--TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--T--TEEEEES-S---HHHHHHHHT-
T ss_pred HHHHHHHHHHh--CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--C--CEEEEec-CCCCHHHHHHHhCC
Confidence 34444455543 379999999987653 334568899996554 5 4676654 77889999999864
Q ss_pred h
Q 023089 214 H 214 (287)
Q Consensus 214 ~ 214 (287)
.
T Consensus 101 ~ 101 (123)
T PF06953_consen 101 S 101 (123)
T ss_dssp -
T ss_pred C
Confidence 4
No 323
>PHA02278 thioredoxin-like protein
Probab=44.43 E-value=8.1 Score=29.38 Aligned_cols=37 Identities=5% Similarity=-0.081 Sum_probs=25.6
Q ss_pred cccCCCCCeeeeeeecCCC------ccccccccccccccCCceeeec
Q 023089 20 FPSSKDKSIVGFCSSRAPP------SQVRVLTSKSISKILPAFSIHF 60 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~~------~~~~~l~l~~~~~~~p~l~~~~ 60 (287)
.+|+++.+++.|+.+|.+. ..++.|++. ..|++++..
T Consensus 38 ~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~----~iPT~i~fk 80 (103)
T PHA02278 38 MFQESGDIKKPILTLNLDAEDVDREKAVKLFDIM----STPVLIGYK 80 (103)
T ss_pred HHHhhhcCCceEEEEECCccccccHHHHHHCCCc----cccEEEEEE
Confidence 3566655556677777772 467788886 499998665
No 324
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=43.92 E-value=73 Score=22.10 Aligned_cols=51 Identities=6% Similarity=-0.100 Sum_probs=33.2
Q ss_pred EEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEcc----CcHHHHHhCCCCcccEEE
Q 023089 132 LDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYE----ELKTMCHSLHIHVLPFFK 185 (287)
Q Consensus 132 V~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~----~~~~l~~~~~V~~~PTi~ 185 (287)
..||.+.|+.|++..-.+++..-. +.+..+|.. ..+++.+--.-..+|++.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~---~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~ 56 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLR---CEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI 56 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCC---CEEEEecCCcCccCCHHHHHhCcCCCCCEEE
Confidence 467888999998887655555433 455566653 234455555667899885
No 325
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=42.08 E-value=13 Score=30.52 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=30.4
Q ss_pred cccCCCCC-eeeeeeecCC--Ccccccccccc--ccccCCceeeec
Q 023089 20 FPSSKDKS-IVGFCSSRAP--PSQVRVLTSKS--ISKILPAFSIHF 60 (287)
Q Consensus 20 ~~a~~~k~-~~~f~~id~~--~~~~~~l~l~~--~~~~~p~l~~~~ 60 (287)
.+|+++.+ .+.|+.||.+ +..++.|++.. .+.++|++.+..
T Consensus 71 ~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~ 116 (152)
T cd02962 71 ELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQ 116 (152)
T ss_pred HHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEE
Confidence 57778875 5999999998 56778888853 123499998665
No 326
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=41.12 E-value=18 Score=30.31 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=28.6
Q ss_pred cccCCCCCeeeeeeecCC-CccccccccccccccCCceeeec
Q 023089 20 FPSSKDKSIVGFCSSRAP-PSQVRVLTSKSISKILPAFSIHF 60 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~-~~~~~~l~l~~~~~~~p~l~~~~ 60 (287)
.+|++|. .+.|+.||++ ...+..|++. .+|+|++..
T Consensus 107 ~LA~~~~-~vkF~kVd~d~~~l~~~f~v~----~vPTlllyk 143 (175)
T cd02987 107 CLAAEYP-AVKFCKIRASATGASDEFDTD----ALPALLVYK 143 (175)
T ss_pred HHHHHCC-CeEEEEEeccchhhHHhCCCC----CCCEEEEEE
Confidence 5888896 4999999999 3456778875 599999765
No 327
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=40.83 E-value=39 Score=24.39 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=21.9
Q ss_pred cccEEEEEECCCceEEEEecCCCCHHHHHHHHHHhc
Q 023089 180 VLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKHG 215 (287)
Q Consensus 180 ~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~ 215 (287)
.-|++++|...............+.+++.+||.+++
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 458999996422223445556789999999999875
No 328
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=40.55 E-value=1.5e+02 Score=25.46 Aligned_cols=53 Identities=8% Similarity=0.096 Sum_probs=36.5
Q ss_pred CCCeEEEEEECCCCh-hHHHHHHHHHHHHHhCC-----CeEEEEEEcc---CcHHHHHhCCC
Q 023089 126 GDRLVILDFYSPGCG-GCKSLHPKICQLAELNP-----NAIFLKVNYE---ELKTMCHSLHI 178 (287)
Q Consensus 126 ~~k~vlV~FyapWC~-~Ck~l~p~~~~la~~~~-----~v~~~~vd~~---~~~~l~~~~~V 178 (287)
.+++++|.|.=+.|+ -|-.+...+.++.++.. +++++.|-+| +.++..++|..
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 689999999988885 68888887777776643 3555555444 23556666665
No 329
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=39.03 E-value=32 Score=27.96 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=15.1
Q ss_pred cHHHHHhCCCCcccEEEE
Q 023089 169 LKTMCHSLHIHVLPFFKF 186 (287)
Q Consensus 169 ~~~l~~~~~V~~~PTi~~ 186 (287)
+...+.+++|.++||+++
T Consensus 132 ~~~~~~~~gi~gTPt~iI 149 (178)
T cd03019 132 AEKLAKKYKITGVPAFVV 149 (178)
T ss_pred HHHHHHHcCCCCCCeEEE
Confidence 345678899999999988
No 330
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=38.50 E-value=2e+02 Score=25.05 Aligned_cols=68 Identities=10% Similarity=0.027 Sum_probs=44.4
Q ss_pred CChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHHHHhcCC
Q 023089 138 GCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKHGTD 217 (287)
Q Consensus 138 WC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~~~ 217 (287)
.|+.|+++.-.+. .+.....+-.||...-++-....-=.+=|=++.| +++ ...+-+.++++|++....
T Consensus 20 dcpf~qr~~m~L~---~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~-d~~--------~~tDs~~Ie~~Lee~l~~ 87 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKF-DEK--------WVTDSDKIEEFLEEKLPP 87 (221)
T ss_pred CChhHHHHHHHHH---HcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEe-CCc--------eeccHHHHHHHHHHhcCC
Confidence 4888888776665 3433577888999877765554444444445555 322 345578999999987543
No 331
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=37.96 E-value=43 Score=28.53 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=24.7
Q ss_pred HHHHhCCCCcccEEEEEECCCceEEEEecCCCCHHHHHHHH
Q 023089 171 TMCHSLHIHVLPFFKFYRGSEGHLCSFSCTNATIKKFKDAL 211 (287)
Q Consensus 171 ~l~~~~~V~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i 211 (287)
.-+.+.||.|+||+++= +++|....|. |.--++.+.++|
T Consensus 170 ~~A~~~Gv~GVP~fvv~-~~~~~~e~fw-G~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVT-NDKGKTEMFF-GSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEE-cCCCCcccee-cCCcHHHHHHHh
Confidence 44567899999999884 3223223455 666666666654
No 332
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=37.13 E-value=16 Score=28.02 Aligned_cols=36 Identities=6% Similarity=-0.138 Sum_probs=27.8
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeec
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHF 60 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~ 60 (287)
.+|.++ +++.|..+|.+ +..++.+|+. ..|++.+..
T Consensus 46 ~la~~~-~~i~~~~vd~d~~~~l~~~~~v~----~vPt~~i~~ 83 (113)
T cd02975 46 ELSELS-DKLKLEIYDFDEDKEKAEKYGVE----RVPTTIFLQ 83 (113)
T ss_pred HHHHhc-CceEEEEEeCCcCHHHHHHcCCC----cCCEEEEEe
Confidence 456666 67889999988 5567788885 599999775
No 333
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=36.55 E-value=46 Score=25.72 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=21.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEcc
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYE 167 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~ 167 (287)
+..|+.|.|+.|++....+++- ++.+-.+|.-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehh
Confidence 3568899999999877665543 3444555543
No 334
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=35.82 E-value=2.3e+02 Score=22.74 Aligned_cols=88 Identities=14% Similarity=0.134 Sum_probs=58.1
Q ss_pred CCCCeEEEEEECCCCh----hHHHHH--HHHHHHHHhCCCeEEEEEEccCcH------------------HHHHhCCCCc
Q 023089 125 GGDRLVILDFYSPGCG----GCKSLH--PKICQLAELNPNAIFLKVNYEELK------------------TMCHSLHIHV 180 (287)
Q Consensus 125 ~~~k~vlV~FyapWC~----~Ck~l~--p~~~~la~~~~~v~~~~vd~~~~~------------------~l~~~~~V~~ 180 (287)
+..|+.+|+.+.|--. .|+... +.+-++-+ .++.+-.-|++... ..++.++...
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~ 96 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS--QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQ 96 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH--cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCC
Confidence 4689999999998764 444432 33333333 35777777776532 2345678999
Q ss_pred ccEEEEEECCC--ceEEEEecCCCCHHHHHHHHHHh
Q 023089 181 LPFFKFYRGSE--GHLCSFSCTNATIKKFKDALAKH 214 (287)
Q Consensus 181 ~PTi~~f~~g~--g~~~~~~~g~~~~~~l~~~i~~~ 214 (287)
+|.+.+.-... -.++....|..+++++.+-|...
T Consensus 97 fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ 132 (136)
T cd02990 97 LPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEA 132 (136)
T ss_pred CCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHH
Confidence 99998884322 24555555999999999887653
No 335
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=35.20 E-value=26 Score=28.96 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=17.8
Q ss_pred cHHHHHhCCCCcccEEEEEECC
Q 023089 169 LKTMCHSLHIHVLPFFKFYRGS 190 (287)
Q Consensus 169 ~~~l~~~~~V~~~PTi~~f~~g 190 (287)
+...+.++||.++||+++..++
T Consensus 158 ~~~~a~~~gv~g~Ptfvv~~~~ 179 (193)
T cd03025 158 DQKLARELGINGFPTLVLEDDN 179 (193)
T ss_pred HHHHHHHcCCCccCEEEEEeCC
Confidence 3456778999999999999664
No 336
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=35.06 E-value=1.4e+02 Score=20.33 Aligned_cols=52 Identities=4% Similarity=-0.076 Sum_probs=32.2
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEcc----CcHHHHHhCCCCcccEEE
Q 023089 131 ILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYE----ELKTMCHSLHIHVLPFFK 185 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~----~~~~l~~~~~V~~~PTi~ 185 (287)
+-.|+.+.|+.|++..-.++...-. +....++.. ..+.+.+......+|++.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~ 57 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALE 57 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEE
Confidence 3445577799999988766665433 344444442 134555556677899874
No 337
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=32.60 E-value=1e+02 Score=20.30 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=23.2
Q ss_pred ECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCc
Q 023089 135 YSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEEL 169 (287)
Q Consensus 135 yapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~ 169 (287)
..=+|++|.+ .+++.....+++.-+.+|...+
T Consensus 5 ~~m~C~~C~~---~v~~~l~~~~GV~~v~vd~~~~ 36 (62)
T PF00403_consen 5 PGMTCEGCAK---KVEKALSKLPGVKSVKVDLETK 36 (62)
T ss_dssp ESTTSHHHHH---HHHHHHHTSTTEEEEEEETTTT
T ss_pred CCcccHHHHH---HHHHHHhcCCCCcEEEEECCCC
Confidence 3457888876 5666677778888888887654
No 338
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=32.13 E-value=33 Score=26.89 Aligned_cols=38 Identities=5% Similarity=-0.213 Sum_probs=28.3
Q ss_pred cccCCCCCeeeeeeecCCC---------ccccccccccccccCCceeeec
Q 023089 20 FPSSKDKSIVGFCSSRAPP---------SQVRVLTSKSISKILPAFSIHF 60 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~~---------~~~~~l~l~~~~~~~p~l~~~~ 60 (287)
.++.++++.+.|+.||.+. .....+++. +.+|++++..
T Consensus 52 ~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~---~~iPT~~~~~ 98 (119)
T cd02952 52 EALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLT---TGVPTLLRWK 98 (119)
T ss_pred HHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcc---cCCCEEEEEc
Confidence 4778888789999999862 455677775 2599998773
No 339
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.31 E-value=1.9e+02 Score=22.20 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=36.5
Q ss_pred CCCChhHHHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCC-CCcccEE-EEEECCC
Q 023089 136 SPGCGGCKSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLH-IHVLPFF-KFYRGSE 191 (287)
Q Consensus 136 apWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~-V~~~PTi-~~f~~g~ 191 (287)
.|-||...+....+..+.. +.|..+|+=+++++.+... ...+||+ -+|-+|+
T Consensus 27 ~P~CGFS~~~vqiL~~~g~----v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GE 80 (105)
T COG0278 27 FPQCGFSAQAVQILSACGV----VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGE 80 (105)
T ss_pred CCCCCccHHHHHHHHHcCC----cceeEEeeccCHHHHhccHhhcCCCCCceeeECCE
Confidence 5678888877766655532 7899999988888865443 3467887 5676754
No 340
>COG3411 Ferredoxin [Energy production and conversion]
Probab=30.02 E-value=1.1e+02 Score=21.39 Aligned_cols=31 Identities=13% Similarity=0.167 Sum_probs=24.9
Q ss_pred ccEEEEEECCCceEEEEecCCCCHHHHHHHHHHhcCC
Q 023089 181 LPFFKFYRGSEGHLCSFSCTNATIKKFKDALAKHGTD 217 (287)
Q Consensus 181 ~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~i~~~~~~ 217 (287)
=|++++|++| +.| +..+.+...+++++|...
T Consensus 17 gPvl~vYpeg----vWY--~~V~p~~a~rIv~~hl~~ 47 (64)
T COG3411 17 GPVLVVYPEG----VWY--TRVDPEDARRIVQSHLLG 47 (64)
T ss_pred CCEEEEecCC----eeE--eccCHHHHHHHHHHHHhC
Confidence 3999999875 556 578999999999998653
No 341
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=29.31 E-value=51 Score=25.20 Aligned_cols=36 Identities=6% Similarity=-0.225 Sum_probs=22.2
Q ss_pred eeeeeecCCCccccccccccccccCCceeeeccCCeeeec
Q 023089 29 VGFCSSRAPPSQVRVLTSKSISKILPAFSIHFKGQSLAVS 68 (287)
Q Consensus 29 ~~f~~id~~~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky~ 68 (287)
...+.+|..+..++.+|+. .+|+..+.+.++..++.
T Consensus 81 ~~~~~~D~~~~~~~~~~v~----~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 81 YAAVGFDPDGRVGIDLGVY----GVPETFLIDGDGIIRYK 116 (127)
T ss_pred CceEEECCcchHHHhcCCC----CCCeEEEECCCceEEEE
Confidence 3345566656667778775 48866666545655554
No 342
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=29.14 E-value=26 Score=29.82 Aligned_cols=36 Identities=14% Similarity=0.042 Sum_probs=28.1
Q ss_pred cccCCCCCeeeeeeecCCCccccccccccccccCCceeeecc
Q 023089 20 FPSSKDKSIVGFCSSRAPPSQVRVLTSKSISKILPAFSIHFK 61 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~~~~~~~l~l~~~~~~~p~l~~~~~ 61 (287)
.+|++|.. +.|+.||++. .+..|++. ..|+|++..+
T Consensus 126 ~LA~k~~~-vkFvkI~ad~-~~~~~~i~----~lPTlliyk~ 161 (192)
T cd02988 126 ELARKFPD-TKFVKIISTQ-CIPNYPDK----NLPTILVYRN 161 (192)
T ss_pred HHHHHCCC-CEEEEEEhHH-hHhhCCCC----CCCEEEEEEC
Confidence 68899974 9999999983 25677775 5999997753
No 343
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=28.67 E-value=80 Score=24.55 Aligned_cols=75 Identities=12% Similarity=0.183 Sum_probs=42.5
Q ss_pred ChhHHHHHHHHHHHHHhCCCeEEEEEEccCcH-HHHHhCC--CCcccEEEEEECCCceEE--EEecC---CCCHHHHHHH
Q 023089 139 CGGCKSLHPKICQLAELNPNAIFLKVNYEELK-TMCHSLH--IHVLPFFKFYRGSEGHLC--SFSCT---NATIKKFKDA 210 (287)
Q Consensus 139 C~~Ck~l~p~~~~la~~~~~v~~~~vd~~~~~-~l~~~~~--V~~~PTi~~f~~g~g~~~--~~~~g---~~~~~~l~~~ 210 (287)
|++|..++-.+...-..-..+.+..|+...-. .+....| =++.|++++=. |...+. ...+| -.+.+.|..+
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~-~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD-GAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC-CCCCcccccccCCeEEeCCHHHHHHH
Confidence 99999988766544433344788888876532 2333333 47999988853 321111 11111 1356677776
Q ss_pred HHHh
Q 023089 211 LAKH 214 (287)
Q Consensus 211 i~~~ 214 (287)
|.+.
T Consensus 103 La~r 106 (112)
T PF11287_consen 103 LAER 106 (112)
T ss_pred HHHH
Confidence 6553
No 344
>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification]
Probab=25.35 E-value=1.8e+02 Score=26.89 Aligned_cols=67 Identities=13% Similarity=0.271 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEEccCcHHHHHhCCCCcccEEEEEECCCceEEEEe-cCCCCHHHHHHHHHH
Q 023089 143 KSLHPKICQLAELNPNAIFLKVNYEELKTMCHSLHIHVLPFFKFYRGSEGHLCSFS-CTNATIKKFKDALAK 213 (287)
Q Consensus 143 k~l~p~~~~la~~~~~v~~~~vd~~~~~~l~~~~~V~~~PTi~~f~~g~g~~~~~~-~g~~~~~~l~~~i~~ 213 (287)
++..|.++++...-+.+.++..|...+. ..+.+|.| |+++|+....-.+.|. ....+.+.|.+.|.+
T Consensus 21 ~r~DP~ik~Ild~ashva~Y~fd~~~~e--WnKtdiEG--tffvY~R~~~p~~gf~i~NR~~~~nf~e~lt~ 88 (335)
T KOG2868|consen 21 QRIDPYIKSILDVASHVALYTFDFGANE--WNKTDIEG--TFFVYKRDASPRHGFLIVNRLSPDNFVEPLTK 88 (335)
T ss_pred hhhCHHHHHHHhhccceeEEEeccccch--hhhcccee--EEEEEEccCCCccceEeecCCChhhhhhhcCC
Confidence 4456777777777777777877777654 34556665 5666643221112221 134455666655543
No 345
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=25.24 E-value=94 Score=23.84 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=22.9
Q ss_pred EEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccC
Q 023089 132 LDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE 168 (287)
Q Consensus 132 V~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~ 168 (287)
..|+.|.|.-|++....+++- ++.+..+|..+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~ 33 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLK 33 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccC
Confidence 468899999999988776653 45555566543
No 346
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=23.75 E-value=62 Score=27.83 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=32.8
Q ss_pred cccCCCCCeeeeeeecCC--CccccccccccccccCCceeeeccCCeeee
Q 023089 20 FPSSKDKSIVGFCSSRAP--PSQVRVLTSKSISKILPAFSIHFKGQSLAV 67 (287)
Q Consensus 20 ~~a~~~k~~~~f~~id~~--~~~~~~l~l~~~~~~~p~l~~~~~~~~~ky 67 (287)
.+|++|=+ ..|+.|||. +=.+.-|+|+- +|++++.-++....|
T Consensus 108 ~LAk~h~e-TrFikvnae~~PFlv~kL~IkV----LP~v~l~k~g~~~D~ 152 (211)
T KOG1672|consen 108 ILAKRHVE-TRFIKVNAEKAPFLVTKLNIKV----LPTVALFKNGKTVDY 152 (211)
T ss_pred HHHHhccc-ceEEEEecccCceeeeeeeeeE----eeeEEEEEcCEEEEE
Confidence 57888887 899999999 44567999975 999997764544444
No 347
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=22.80 E-value=2.5e+02 Score=21.56 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=35.0
Q ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHhCC--CeEEEEEEccC
Q 023089 126 GDRLVILDFYSPGCGGCKSLHPKICQLAELNP--NAIFLKVNYEE 168 (287)
Q Consensus 126 ~~k~vlV~FyapWC~~Ck~l~p~~~~la~~~~--~v~~~~vd~~~ 168 (287)
.++++||.=-|+-|+.-. --..+++|.++|. ++.++..-|.+
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 689999999999999888 5568888998885 58888888753
No 348
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=22.27 E-value=1.1e+02 Score=23.85 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=17.4
Q ss_pred EEEEECCCChhHHHHHHHHHHH
Q 023089 131 ILDFYSPGCGGCKSLHPKICQL 152 (287)
Q Consensus 131 lV~FyapWC~~Ck~l~p~~~~l 152 (287)
+..|+.|.|+.|+.....+++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4568899999999988766554
No 349
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=22.14 E-value=2.5e+02 Score=18.90 Aligned_cols=68 Identities=4% Similarity=-0.038 Sum_probs=38.0
Q ss_pred EEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccC-cHHHHHhCCC-CcccEEEEEECCCceEEEEecCCCCHHHHHHH
Q 023089 133 DFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE-LKTMCHSLHI-HVLPFFKFYRGSEGHLCSFSCTNATIKKFKDA 210 (287)
Q Consensus 133 ~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~-~~~l~~~~~V-~~~PTi~~f~~g~g~~~~~~~g~~~~~~l~~~ 210 (287)
.|+.+.|+.|.+..=.++...-.| ....+|... .+++.+.... ..+|++.. + +..+. .-..+.++
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~~---~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~--~~~l~------eS~aI~~y 69 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVPY---EYVEEDLGNKSELLLASNPVHKKIPVLLH--N--GKPIC------ESLIIVEY 69 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCCC---EEEEeCcccCCHHHHHhCCCCCCCCEEEE--C--CEEee------hHHHHHHH
Confidence 456788999999887666654333 334455433 2333333333 68998853 3 23322 24566677
Q ss_pred HHH
Q 023089 211 LAK 213 (287)
Q Consensus 211 i~~ 213 (287)
|++
T Consensus 70 L~~ 72 (74)
T cd03058 70 IDE 72 (74)
T ss_pred HHh
Confidence 664
No 350
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=20.46 E-value=1.6e+02 Score=19.90 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=31.0
Q ss_pred EEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEccC-cHHHHHhCCCCcccEEEE
Q 023089 133 DFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYEE-LKTMCHSLHIHVLPFFKF 186 (287)
Q Consensus 133 ~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~~-~~~l~~~~~V~~~PTi~~ 186 (287)
.|+.+.|+.|.+..-.++...... .+....+|... .+++.+......+|++..
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 56 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSDDESLLAVNPLGKIPALVL 56 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccCChHHHHhCCCCCCCEEEE
Confidence 467888999998776555521111 24445555332 344545455678897754
No 351
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=20.35 E-value=4.9e+02 Score=23.19 Aligned_cols=84 Identities=17% Similarity=0.239 Sum_probs=57.0
Q ss_pred CeEEEEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEcc------------------CcHHHHHhCCCCcccEEEEEEC
Q 023089 128 RLVILDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYE------------------ELKTMCHSLHIHVLPFFKFYRG 189 (287)
Q Consensus 128 k~vlV~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~------------------~~~~l~~~~~V~~~PTi~~f~~ 189 (287)
.-|+=.|.+..|..|--....+.+++++ +++.-+...+| ....+.+.|+-++++|=-.+-+
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~-~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvn 120 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADD-PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVN 120 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccC-CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheee
Confidence 3445556678999999999999998877 34444333332 2335677889999988877767
Q ss_pred CCceEEEEecCCCCHHHHHHHHHHhcCC
Q 023089 190 SEGHLCSFSCTNATIKKFKDALAKHGTD 217 (287)
Q Consensus 190 g~g~~~~~~~g~~~~~~l~~~i~~~~~~ 217 (287)
|. ... .+.+..+|.+.|......
T Consensus 121 Gr--~~~---~Gad~~~i~~~i~a~~~~ 143 (261)
T COG5429 121 GR--VHA---NGADPGAIEDAIAAMARR 143 (261)
T ss_pred ch--hhh---cCCCHHHHHHHHHHhhcc
Confidence 53 322 467788888888776543
No 352
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=20.24 E-value=1.1e+02 Score=23.38 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=21.3
Q ss_pred EEEECCCChhHHHHHHHHHHHHHhCCCeEEEEEEcc
Q 023089 132 LDFYSPGCGGCKSLHPKICQLAELNPNAIFLKVNYE 167 (287)
Q Consensus 132 V~FyapWC~~Ck~l~p~~~~la~~~~~v~~~~vd~~ 167 (287)
..|+.|.|.-|++....+++- ++.+-.+|.-
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~ 32 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYL 32 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecc
Confidence 468899999999987655543 4445555553
Done!