BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023091
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O78|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (1.3s)
[10-48] Deletion Mutant
Length = 84
Score = 36.6 bits (83), Expect = 0.015, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
+ KEGD +K GQT+ L+ E + + G+V K+L + DAV G LI +
Sbjct: 30 LVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 83
>pdb|1DCZ|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
pdb|1DD2|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
Length = 77
Score = 36.2 bits (82), Expect = 0.020, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
+ KEGD +K GQT+ L+ E + + G+V K+L + DAV G LI +
Sbjct: 23 LVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76
>pdb|1Z6H|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form
pdb|1Z7T|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo-Form
pdb|2B8F|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo Form
(Energy Minimized Mean Structure)
pdb|2B8G|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form (Energy Minimized Mean Structure)
Length = 72
Score = 35.8 bits (81), Expect = 0.025, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI 277
K GD I++GQ + L+ E+P+ +D +G V ++ +GD V GD L+
Sbjct: 16 KAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLL 65
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 220 GKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
G+ P+ GD ++ G + ++ TE+ V + +G+V K+L +GD V GD L+AV
Sbjct: 1176 GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGD-LVAV 1234
Query: 280 L 280
+
Sbjct: 1235 I 1235
>pdb|1A6X|A Chain A, Structure Of The Apo-Biotin Carboxyl Carrier Protein (Apo-
Bccp87) Of Escherichia Coli Acetyl-Coa Carboxylase, Nmr,
49 Structures
Length = 87
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 191 AALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELP 250
AA E SG +V SP VG+F R + K + G + G T+ ++
Sbjct: 5 AAAEISGH----IVRSPMVGTFYRTPSPDAKA---FIEVGQKVNVGDTLCIVEAMKMMNQ 57
Query: 251 VKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
+++D +G V +L + G V F +PL+ +
Sbjct: 58 IEADKSGTVKAILVESGQPVEFDEPLVVI 86
>pdb|3BDO|A Chain A, Solution Structure Of Apo-Biotinyl Domain From Acetyl
Coenzyme A Carboxylase Of Escherichia Coli Determined By
Triple-Resonance Nmr Spectroscopy
Length = 82
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKL 262
+V SP VG+F R + K + G + G T+ ++ +++D +G V +
Sbjct: 8 IVRSPMVGTFYRTPSPDAKA---FIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAI 64
Query: 263 LFDDGDAVGFGDPLIAV 279
L + G V F +PL+ +
Sbjct: 65 LVESGQPVEFDEPLVVI 81
>pdb|1BDO|A Chain A, Structure Of The Biotinyl Domain Of Acetyl-Coenzyme A
Carboxylase Determined By Mad Phasing
pdb|2BDO|A Chain A, Solution Structure Of Holo-Biotinyl Domain From Acetyl
Coenzyme A Carboxylase Of Escherichia Coli Determined By
Triple-Resonance Nmr Spectroscopy
Length = 80
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKL 262
+V SP VG+F R + K + G + G T+ ++ +++D +G V +
Sbjct: 6 IVRSPMVGTFYRTPSPDAKA---FIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAI 62
Query: 263 LFDDGDAVGFGDPLIAV 279
L + G V F +PL+ +
Sbjct: 63 LVESGQPVEFDEPLVVI 79
>pdb|2D5D|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2D5D|B Chain B, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2EVB|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form I
pdb|2EJF|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJG|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 74
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 220 GKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI 277
GK + + GD ++ GQ + L+ E + S G V ++L +G+AV G PLI
Sbjct: 14 GKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLI 71
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From
Thermoplasma Acidophilum
Length = 77
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
KEGD++++ Q + + + + S V G+++K+L+ +G V G L+ +
Sbjct: 24 KEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQI 75
>pdb|2JKU|A Chain A, Crystal Structure Of The N-Terminal Region Of The Biotin
Acceptor Domain Of Human Propionyl-Coa Carboxylase
Length = 94
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI 277
K GD + EGQ I ++ + + + G V + GD VG GD L+
Sbjct: 42 KPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLV 91
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii
Mycobacterium Smegmatis
Length = 489
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 95 PSGFEALMLEV-CDETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNIS 142
P GF A ++EV +ET +AEL+ V FE R+ G +A L I+
Sbjct: 257 PEGFGAKVVEVLVNETGLAELRTAVDSFEAQAARD-GLVEASGALRTIA 304
>pdb|1YX2|A Chain A, Crystal Structure Of The Probable Aminomethyltransferase
From Bacillus Subtilis
pdb|1YX2|B Chain B, Crystal Structure Of The Probable Aminomethyltransferase
From Bacillus Subtilis
Length = 365
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 240 GYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGF 272
GY + G E+ +SD A + K + D GDA G
Sbjct: 191 GYTGEDGYEIYCRSDDAXHIWKKIIDAGDAYGL 223
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,645,254
Number of Sequences: 62578
Number of extensions: 228314
Number of successful extensions: 618
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 17
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)