BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023091
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q06881|BCCP_NOSS1 Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Nostoc
sp. (strain PCC 7120 / UTEX 2576) GN=accB PE=1 SV=2
Length = 182
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 21/186 (11%)
Query: 102 MLEVCDETEIAELKLKVGDFEMHLKRNVGA-----PKAPAPLSNISPTTPPPIPTEPMEV 156
+L +T+IAE+ LK DFE+ +++ VG P APLS + + P
Sbjct: 11 LLTTIAQTDIAEVTLKSDDFELTVRKAVGVNNSVVPVVTAPLSGVVGSGLPS-------- 62
Query: 157 SDPVSPPPPPSP-PKPYSEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRN 215
+ P+ PSP P+P + +AA S G ++ + V SP VG+F R
Sbjct: 63 AIPIVAHAAPSPSPEPGTSRAADHAVTSSGSQPGAKIIDQKLAE----VASPMVGTFYR- 117
Query: 216 RTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDP 275
++ + GD I++GQT+ ++ +++DV+G+V+++L +G+ V + P
Sbjct: 118 --APAPGEAVFVEVGDRIRQGQTVCIIEAMKLMNEIEADVSGQVIEILVQNGEPVEYNQP 175
Query: 276 LIAVLP 281
L+ + P
Sbjct: 176 LMRIKP 181
>sp|Q58628|PYCB_METJA Pyruvate carboxylase subunit B OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=pycB PE=1 SV=1
Length = 567
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
KEGD +K+G I L+ E P++S V G V ++L D+GDAV GD ++ +
Sbjct: 515 KEGDKVKKGDVIVVLEAMKMEHPIESPVEGTVERILIDEGDAVNVGDVIMII 566
>sp|Q9LLC1|BCCP2_ARATH Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2,
chloroplastic OS=Arabidopsis thaliana GN=BCCP2 PE=1 SV=1
Length = 255
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 24/182 (13%)
Query: 102 MLEVCDETEIAELKLKVGDFEMHLKRNVGAPKA--PAPLSNISPTTPPPIPTEPMEVSDP 159
+L++ D +I EL+LK D E+ +++ +A PAP+ + + PP + M
Sbjct: 96 LLKLVDSKDIVELELKQLDCEIVIRKKEALQQAVPPAPVYH---SMPPVMADFSM----- 147
Query: 160 VSPPPPPSPPKPYSEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVK 219
PP+ P P + K + ++ S+ + + SP G+F R+
Sbjct: 148 -----PPAQPVALPPSPTPTSTPATAKPT------SAPSSSHPPLKSPMAGTFYRS---P 193
Query: 220 GKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
G + P K GD +++GQ + ++ ++++ +G +++LL +DG V PL +
Sbjct: 194 GPGEPPFVKVGDKVQKGQIVCIIEAMKLMNEIEAEKSGTIMELLAEDGKPVSVDTPLFVI 253
Query: 280 LP 281
P
Sbjct: 254 AP 255
>sp|Q9XCD6|BTB7_MYCS2 Biotinylated protein TB7.3 homolog OS=Mycobacterium smegmatis
(strain ATCC 700084 / mc(2)155) GN=MSMEG_1917 PE=3 SV=3
Length = 71
Score = 40.8 bits (94), Expect = 0.011, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280
+ EGD I EG T+ L+ E+PV ++VAG V K+ +GD + G LIAV+
Sbjct: 17 VVHEGDQIGEGDTLVLLESMKMEIPVLAEVAGTVTKVNVAEGDVIQAGH-LIAVI 70
>sp|P0ABE1|BCCP_SHIFL Biotin carboxyl carrier protein of acetyl-CoA carboxylase
OS=Shigella flexneri GN=accB PE=3 SV=1
Length = 156
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 31/178 (17%)
Query: 102 MLEVCDETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVS 161
++E+ +E+ I+EL++ G+ + + R AP A P+ + P+ +P + S+ +
Sbjct: 9 LIELVEESGISELEISEGEESVRISR--AAPAASFPV--MQQAYAAPMMQQPAQ-SNAAA 63
Query: 162 PPPPPSPPKPYSEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGK 221
P PS P AA E SG +V SP VG+F R + K
Sbjct: 64 PATVPSMEAP-------------------AAAEISGH----IVRSPMVGTFYRTPSPDAK 100
Query: 222 KQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
+ G + G T+ ++ +++D +G V +L + G V F +PL+ +
Sbjct: 101 A---FIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 155
>sp|P0ABD8|BCCP_ECOLI Biotin carboxyl carrier protein of acetyl-CoA carboxylase
OS=Escherichia coli (strain K12) GN=accB PE=1 SV=1
Length = 156
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 31/178 (17%)
Query: 102 MLEVCDETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVS 161
++E+ +E+ I+EL++ G+ + + R AP A P+ + P+ +P + S+ +
Sbjct: 9 LIELVEESGISELEISEGEESVRISR--AAPAASFPV--MQQAYAAPMMQQPAQ-SNAAA 63
Query: 162 PPPPPSPPKPYSEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGK 221
P PS P AA E SG +V SP VG+F R + K
Sbjct: 64 PATVPSMEAP-------------------AAAEISGH----IVRSPMVGTFYRTPSPDAK 100
Query: 222 KQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
+ G + G T+ ++ +++D +G V +L + G V F +PL+ +
Sbjct: 101 A---FIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 155
>sp|P0ABD9|BCCP_ECOL6 Biotin carboxyl carrier protein of acetyl-CoA carboxylase
OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 /
UPEC) GN=accB PE=3 SV=1
Length = 156
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 31/178 (17%)
Query: 102 MLEVCDETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVS 161
++E+ +E+ I+EL++ G+ + + R AP A P+ + P+ +P + S+ +
Sbjct: 9 LIELVEESGISELEISEGEESVRISR--AAPAASFPV--MQQAYAAPMMQQPAQ-SNAAA 63
Query: 162 PPPPPSPPKPYSEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGK 221
P PS P AA E SG +V SP VG+F R + K
Sbjct: 64 PATVPSMEAP-------------------AAAEISGH----IVRSPMVGTFYRTPSPDAK 100
Query: 222 KQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
+ G + G T+ ++ +++D +G V +L + G V F +PL+ +
Sbjct: 101 A---FIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 155
>sp|P0ABE0|BCCP_ECO57 Biotin carboxyl carrier protein of acetyl-CoA carboxylase
OS=Escherichia coli O157:H7 GN=accB PE=3 SV=1
Length = 156
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 31/178 (17%)
Query: 102 MLEVCDETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVS 161
++E+ +E+ I+EL++ G+ + + R AP A P+ + P+ +P + S+ +
Sbjct: 9 LIELVEESGISELEISEGEESVRISR--AAPAASFPV--MQQAYAAPMMQQPAQ-SNAAA 63
Query: 162 PPPPPSPPKPYSEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGK 221
P PS P AA E SG +V SP VG+F R + K
Sbjct: 64 PATVPSMEAP-------------------AAAEISGH----IVRSPMVGTFYRTPSPDAK 100
Query: 222 KQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
+ G + G T+ ++ +++D +G V +L + G V F +PL+ +
Sbjct: 101 A---FIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 155
>sp|Q42533|BCCP1_ARATH Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1,
chloroplastic OS=Arabidopsis thaliana GN=BCCP1 PE=1 SV=2
Length = 280
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 204 VFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL 263
V SP G+F R+ + P K GD +++GQ + ++ ++SD G V+ ++
Sbjct: 206 VKSPMAGTFYRS---PAPGEPPFIKVGDKVQKGQVLCIVEAMKLMNEIESDHTGTVVDIV 262
Query: 264 FDDGDAVGFGDPLIAVLP 281
+DG V PL V P
Sbjct: 263 AEDGKPVSLDTPLFVVQP 280
>sp|P43874|BCCP_HAEIN Biotin carboxyl carrier protein of acetyl-CoA carboxylase
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=accB PE=1 SV=1
Length = 155
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKL 262
LV SP VG+F R+ + + K + G +K G + ++ +++D AG V +
Sbjct: 81 LVRSPMVGTFYRSPSPEAK---AFVEVGQSVKVGDALCIVEAMKMMNRIEADKAGVVKAI 137
Query: 263 LFDDGDAVGFGDPLIAV 279
L +DG+AV F +PLI +
Sbjct: 138 LINDGNAVEFDEPLIVI 154
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,368,841
Number of Sequences: 539616
Number of extensions: 5233998
Number of successful extensions: 63897
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 941
Number of HSP's that attempted gapping in prelim test: 37882
Number of HSP's gapped (non-prelim): 15646
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)