Query 023091
Match_columns 287
No_of_seqs 264 out of 2017
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 08:22:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00531 BCCP acetyl-CoA carb 100.0 3.2E-30 6.9E-35 222.6 19.2 156 93-280 1-156 (156)
2 PRK06302 acetyl-CoA carboxylas 100.0 2.2E-29 4.7E-34 217.1 19.4 155 93-280 1-155 (155)
3 COG0511 AccB Biotin carboxyl c 99.9 2.6E-27 5.7E-32 201.0 14.0 71 201-281 70-140 (140)
4 PLN02983 biotin carboxyl carri 99.9 8.7E-25 1.9E-29 202.4 20.7 171 93-281 104-274 (274)
5 PF00364 Biotin_lipoyl: Biotin 99.7 8.6E-18 1.9E-22 127.8 7.3 73 203-279 2-74 (74)
6 PRK07051 hypothetical protein; 99.7 3.8E-16 8.3E-21 120.5 11.0 76 202-280 4-79 (80)
7 PRK05889 putative acetyl-CoA c 99.7 2.8E-16 6E-21 118.4 9.7 68 203-280 4-71 (71)
8 PRK08225 acetyl-CoA carboxylas 99.6 1.7E-15 3.7E-20 113.3 9.3 68 203-280 3-70 (70)
9 PRK06549 acetyl-CoA carboxylas 99.6 1.9E-14 4.2E-19 121.6 16.6 71 200-280 60-130 (130)
10 PRK06748 hypothetical protein; 99.6 4.4E-15 9.6E-20 116.7 10.3 71 201-281 4-75 (83)
11 PRK05641 putative acetyl-CoA c 99.6 4.3E-14 9.3E-19 122.3 15.6 69 202-280 85-153 (153)
12 cd06850 biotinyl_domain The bi 99.5 1.8E-13 3.9E-18 98.7 8.8 66 204-279 2-67 (67)
13 PRK14042 pyruvate carboxylase 99.4 2.1E-12 4.6E-17 132.1 10.6 69 203-281 527-595 (596)
14 cd06663 Biotinyl_lipoyl_domain 99.3 6.4E-12 1.4E-16 93.8 8.6 61 209-279 13-73 (73)
15 PRK14875 acetoin dehydrogenase 99.3 2.9E-12 6.3E-17 118.8 7.3 60 223-282 20-79 (371)
16 PRK09282 pyruvate carboxylase 99.3 8.6E-12 1.9E-16 127.6 10.1 70 202-281 523-592 (592)
17 PRK14040 oxaloacetate decarbox 99.3 9.6E-12 2.1E-16 127.3 9.9 68 202-279 525-592 (593)
18 TIGR02712 urea_carbox urea car 99.3 1.3E-11 2.8E-16 134.7 10.3 72 199-280 1130-1201(1201)
19 TIGR01108 oadA oxaloacetate de 99.3 1.2E-11 2.5E-16 126.4 8.8 65 202-276 518-582 (582)
20 PLN02226 2-oxoglutarate dehydr 99.3 1.5E-11 3.3E-16 122.5 8.9 77 202-282 92-168 (463)
21 TIGR01235 pyruv_carbox pyruvat 99.2 3E-11 6.5E-16 131.3 9.9 70 201-280 1074-1143(1143)
22 PTZ00144 dihydrolipoamide succ 99.2 1.8E-11 3.9E-16 120.7 7.4 78 201-282 44-121 (418)
23 COG4770 Acetyl/propionyl-CoA c 99.2 2.4E-11 5.2E-16 122.7 7.7 70 202-281 576-645 (645)
24 PRK12999 pyruvate carboxylase; 99.2 5E-11 1.1E-15 129.7 10.1 70 202-281 1077-1146(1146)
25 COG0508 AceF Pyruvate/2-oxoglu 99.1 6.3E-11 1.4E-15 116.3 7.0 78 202-283 3-80 (404)
26 PRK05704 dihydrolipoamide succ 99.1 2.9E-10 6.2E-15 111.8 9.2 59 225-283 22-80 (407)
27 COG1038 PycA Pyruvate carboxyl 99.1 1.7E-10 3.6E-15 120.3 6.4 70 201-280 1079-1148(1149)
28 PRK11854 aceF pyruvate dehydro 99.0 5.4E-10 1.2E-14 115.1 7.8 76 201-282 206-281 (633)
29 TIGR01348 PDHac_trf_long pyruv 99.0 5.5E-10 1.2E-14 113.3 7.7 77 201-282 116-192 (546)
30 TIGR01347 sucB 2-oxoglutarate 99.0 1.1E-09 2.3E-14 107.7 9.2 58 225-282 20-77 (403)
31 TIGR02927 SucB_Actino 2-oxoglu 99.0 1.5E-09 3.3E-14 111.1 9.0 77 202-282 136-212 (590)
32 PRK11855 dihydrolipoamide acet 99.0 1E-09 2.2E-14 111.2 7.7 77 201-282 119-195 (547)
33 PRK11854 aceF pyruvate dehydro 99.0 1E-09 2.3E-14 113.0 7.6 74 203-282 4-77 (633)
34 KOG0559 Dihydrolipoamide succi 98.9 1.8E-09 3.8E-14 104.6 4.1 76 202-281 73-148 (457)
35 PLN02528 2-oxoisovalerate dehy 98.8 1.2E-08 2.5E-13 100.7 9.5 58 225-282 18-75 (416)
36 cd06849 lipoyl_domain Lipoyl d 98.8 3.7E-08 8E-13 69.7 8.6 64 206-279 11-74 (74)
37 PRK11855 dihydrolipoamide acet 98.8 1.2E-08 2.6E-13 103.4 7.1 74 204-282 5-78 (547)
38 TIGR01348 PDHac_trf_long pyruv 98.7 2.6E-08 5.6E-13 101.3 8.8 64 208-281 12-75 (546)
39 PRK01202 glycine cleavage syst 98.7 3.1E-08 6.8E-13 83.2 7.0 58 226-283 44-108 (127)
40 PRK11856 branched-chain alpha- 98.7 6.2E-08 1.3E-12 94.7 9.3 59 224-282 21-79 (411)
41 TIGR01349 PDHac_trf_mito pyruv 98.6 8.1E-08 1.8E-12 95.3 8.7 58 224-281 18-76 (435)
42 KOG0369 Pyruvate carboxylase [ 98.6 3.9E-08 8.5E-13 101.5 6.2 70 202-281 1107-1176(1176)
43 PLN02744 dihydrolipoyllysine-r 98.6 7.7E-08 1.7E-12 97.9 8.2 74 203-280 114-188 (539)
44 KOG0238 3-Methylcrotonyl-CoA c 98.6 3.5E-08 7.6E-13 99.3 4.7 69 202-280 602-670 (670)
45 TIGR03077 not_gcvH glycine cle 98.6 1.7E-07 3.7E-12 77.3 7.2 58 226-283 37-101 (110)
46 PRK11892 pyruvate dehydrogenas 98.5 2.1E-07 4.6E-12 93.1 8.6 62 223-284 20-82 (464)
47 TIGR02927 SucB_Actino 2-oxoglu 98.5 1E-07 2.2E-12 97.8 6.1 74 204-281 5-78 (590)
48 PRK00624 glycine cleavage syst 98.5 3.2E-07 6.9E-12 76.2 6.8 58 226-283 39-103 (114)
49 KOG0557 Dihydrolipoamide acety 98.4 3.1E-07 6.8E-12 91.3 6.3 64 223-286 56-120 (470)
50 TIGR00527 gcvH glycine cleavag 98.3 1.2E-06 2.6E-11 73.7 6.2 56 228-283 45-107 (127)
51 cd06848 GCS_H Glycine cleavage 98.3 1.5E-06 3.3E-11 69.1 5.6 54 206-268 25-78 (96)
52 PRK13380 glycine cleavage syst 98.3 2.1E-06 4.5E-11 73.9 6.5 71 204-283 38-115 (144)
53 PRK09783 copper/silver efflux 98.2 1.1E-05 2.5E-10 79.0 10.8 72 201-282 123-243 (409)
54 TIGR00998 8a0101 efflux pump m 98.1 9.2E-06 2E-10 76.0 8.6 35 249-283 205-239 (334)
55 TIGR01730 RND_mfp RND family e 98.0 1.3E-05 2.8E-10 73.6 7.7 71 202-282 27-168 (322)
56 PRK10476 multidrug resistance 98.0 2.4E-05 5.1E-10 74.4 8.2 35 249-283 209-243 (346)
57 COG0509 GcvH Glycine cleavage 97.9 2.3E-05 5E-10 66.7 6.0 58 226-283 46-110 (131)
58 KOG0558 Dihydrolipoamide trans 97.9 7.3E-06 1.6E-10 79.7 2.4 80 199-282 62-141 (474)
59 TIGR03309 matur_yqeB selenium- 97.9 7E-05 1.5E-09 70.1 8.8 67 201-283 164-230 (256)
60 PRK10559 p-hydroxybenzoic acid 97.9 5.6E-05 1.2E-09 71.6 8.3 72 201-282 47-188 (310)
61 PRK09578 periplasmic multidrug 97.8 7E-05 1.5E-09 72.3 8.3 71 201-281 63-206 (385)
62 PRK15136 multidrug efflux syst 97.8 7.5E-05 1.6E-09 72.8 8.3 34 249-282 216-249 (390)
63 PRK03598 putative efflux pump 97.8 7.1E-05 1.5E-09 70.6 7.8 34 249-282 204-237 (331)
64 PRK09859 multidrug efflux syst 97.6 0.00017 3.7E-09 69.7 8.3 71 201-281 61-204 (385)
65 PRK15030 multidrug efflux syst 97.6 0.00019 4E-09 69.9 8.5 71 201-281 65-208 (397)
66 PF13533 Biotin_lipoyl_2: Biot 97.6 9.7E-05 2.1E-09 52.4 4.9 34 249-282 3-36 (50)
67 KOG0368 Acetyl-CoA carboxylase 97.6 8.9E-05 1.9E-09 82.2 6.8 73 200-283 684-756 (2196)
68 PF01597 GCV_H: Glycine cleava 97.6 0.00018 3.9E-09 60.1 7.0 58 226-283 38-102 (122)
69 PRK11578 macrolide transporter 97.5 0.00028 6.1E-09 67.7 7.8 72 201-282 61-220 (370)
70 cd06253 M14_ASTE_ASPA_like_3 A 97.5 0.00064 1.4E-08 64.4 9.8 66 201-279 229-297 (298)
71 PRK11556 multidrug efflux syst 97.4 0.00041 8.8E-09 68.2 7.8 72 200-281 86-230 (415)
72 PF12700 HlyD_2: HlyD family s 97.4 0.00029 6.3E-09 64.9 5.8 32 201-243 21-52 (328)
73 cd06252 M14_ASTE_ASPA_like_2 A 97.3 0.0014 3.1E-08 62.3 10.0 68 201-281 244-315 (316)
74 PF13533 Biotin_lipoyl_2: Biot 97.3 0.00047 1E-08 48.9 4.3 36 202-247 3-38 (50)
75 cd06251 M14_ASTE_ASPA_like_1 A 97.2 0.0016 3.4E-08 61.2 9.1 65 202-279 220-286 (287)
76 TIGR02971 heterocyst_DevB ABC 97.2 0.0013 2.9E-08 61.6 8.2 33 250-283 206-238 (327)
77 PRK05889 putative acetyl-CoA c 97.2 0.0008 1.7E-08 50.5 5.1 35 248-282 2-36 (71)
78 cd06250 M14_PaAOTO_like An unc 97.1 0.0025 5.5E-08 62.0 9.2 67 200-279 288-358 (359)
79 TIGR02994 ectoine_eutE ectoine 97.1 0.0033 7.1E-08 60.5 9.4 66 201-279 255-324 (325)
80 PF13375 RnfC_N: RnfC Barrel s 97.0 0.0008 1.7E-08 54.8 4.4 40 223-263 42-81 (101)
81 TIGR01843 type_I_hlyD type I s 96.9 0.0036 7.8E-08 59.8 8.4 33 250-282 273-306 (423)
82 cd06254 M14_ASTE_ASPA_like_4 A 96.9 0.0038 8.2E-08 58.6 8.2 65 200-277 222-288 (288)
83 PRK08225 acetyl-CoA carboxylas 96.8 0.0028 6.2E-08 47.1 5.2 35 248-282 1-35 (70)
84 PRK06748 hypothetical protein; 96.7 0.0041 8.9E-08 49.2 5.5 34 248-281 4-37 (83)
85 PRK12784 hypothetical protein; 96.6 0.01 2.2E-07 46.7 6.9 71 202-282 6-77 (84)
86 cd06850 biotinyl_domain The bi 96.4 0.0052 1.1E-07 43.8 4.4 33 250-282 1-33 (67)
87 PF00364 Biotin_lipoyl: Biotin 96.0 0.012 2.6E-07 44.6 4.4 34 249-282 1-40 (74)
88 PRK06549 acetyl-CoA carboxylas 96.0 0.014 3E-07 49.7 5.3 34 249-282 62-95 (130)
89 PF13437 HlyD_3: HlyD family s 95.9 0.014 3.1E-07 45.7 5.0 33 250-282 1-33 (105)
90 COG0511 AccB Biotin carboxyl c 95.9 0.012 2.6E-07 50.2 4.7 34 248-281 70-103 (140)
91 COG3608 Predicted deacylase [G 95.8 0.031 6.7E-07 54.4 7.4 66 202-280 257-325 (331)
92 cd06255 M14_ASTE_ASPA_like_5 A 95.8 0.041 9E-07 51.9 8.1 51 201-262 231-283 (293)
93 PRK09439 PTS system glucose-sp 95.7 0.044 9.5E-07 48.6 7.6 65 202-280 21-124 (169)
94 PRK10476 multidrug resistance 95.6 0.02 4.3E-07 54.5 5.6 41 240-282 42-82 (346)
95 PRK05641 putative acetyl-CoA c 95.5 0.022 4.8E-07 49.6 4.9 34 249-282 85-118 (153)
96 TIGR00998 8a0101 efflux pump m 95.2 0.025 5.4E-07 53.0 4.7 35 248-282 42-76 (334)
97 TIGR01936 nqrA NADH:ubiquinone 95.2 0.03 6.5E-07 56.4 5.4 40 224-264 42-81 (447)
98 KOG3373 Glycine cleavage syste 95.2 0.022 4.7E-07 50.4 3.9 56 228-283 89-151 (172)
99 TIGR01843 type_I_hlyD type I s 95.1 0.038 8.2E-07 52.9 5.5 43 240-282 35-77 (423)
100 PF04952 AstE_AspA: Succinylgl 95.1 0.078 1.7E-06 49.0 7.4 66 202-280 221-290 (292)
101 PF00358 PTS_EIIA_1: phosphoen 95.0 0.099 2.1E-06 44.6 7.1 65 202-280 3-106 (132)
102 PRK15136 multidrug efflux syst 94.8 0.039 8.4E-07 54.0 4.9 35 248-282 61-95 (390)
103 TIGR01000 bacteriocin_acc bact 94.8 0.053 1.2E-06 53.9 5.9 42 241-282 52-93 (457)
104 PRK09578 periplasmic multidrug 94.8 0.046 1E-06 52.9 5.4 44 238-282 54-97 (385)
105 cd00210 PTS_IIA_glc PTS_IIA, P 94.8 0.099 2.1E-06 44.1 6.6 20 261-280 83-102 (124)
106 PRK11556 multidrug efflux syst 94.8 0.042 9.1E-07 54.1 5.1 44 238-282 78-121 (415)
107 TIGR01730 RND_mfp RND family e 94.8 0.062 1.4E-06 49.3 5.8 41 240-281 19-59 (322)
108 PRK09859 multidrug efflux syst 94.7 0.05 1.1E-06 52.7 5.4 45 237-282 51-95 (385)
109 TIGR00830 PTBA PTS system, glu 94.7 0.1 2.2E-06 43.9 6.4 20 261-280 83-102 (121)
110 PRK05352 Na(+)-translocating N 94.6 0.053 1.2E-06 54.6 5.3 40 224-264 43-82 (448)
111 PRK03598 putative efflux pump 94.6 0.076 1.7E-06 50.2 6.1 35 248-282 43-77 (331)
112 PRK11578 macrolide transporter 94.6 0.06 1.3E-06 51.7 5.5 43 238-281 52-94 (370)
113 TIGR03794 NHPM_micro_HlyD NHPM 94.5 0.07 1.5E-06 52.3 5.8 35 248-282 58-92 (421)
114 PRK15030 multidrug efflux syst 94.4 0.061 1.3E-06 52.5 5.2 42 240-282 58-99 (397)
115 PRK07051 hypothetical protein; 94.4 0.067 1.5E-06 41.1 4.4 36 247-282 2-44 (80)
116 COG2190 NagE Phosphotransferas 94.4 0.15 3.3E-06 44.8 7.0 69 202-280 6-109 (156)
117 COG1566 EmrA Multidrug resista 94.4 0.053 1.1E-06 53.1 4.6 34 249-282 54-87 (352)
118 TIGR01945 rnfC electron transp 94.3 0.051 1.1E-06 54.1 4.4 40 223-263 43-82 (435)
119 TIGR01235 pyruv_carbox pyruvat 93.8 0.14 3E-06 57.1 7.0 72 200-282 1037-1108(1143)
120 PRK10559 p-hydroxybenzoic acid 93.8 0.083 1.8E-06 50.1 4.6 34 249-282 48-81 (310)
121 PF05896 NQRA: Na(+)-transloca 93.8 0.1 2.2E-06 49.2 5.0 41 225-266 43-83 (257)
122 PF09891 DUF2118: Uncharacteri 93.7 0.11 2.4E-06 45.4 4.8 39 225-263 94-133 (150)
123 PF13437 HlyD_3: HlyD family s 93.6 0.11 2.4E-06 40.6 4.4 34 203-246 1-34 (105)
124 PRK05035 electron transport co 93.4 0.1 2.2E-06 55.3 4.8 40 223-263 49-88 (695)
125 TIGR00999 8a0102 Membrane Fusi 93.3 0.14 3E-06 46.1 5.0 34 249-282 89-122 (265)
126 COG4656 RnfC Predicted NADH:ub 93.3 0.068 1.5E-06 54.8 3.3 39 223-263 45-83 (529)
127 PRK09783 copper/silver efflux 92.4 0.25 5.5E-06 48.7 5.8 44 238-281 112-157 (409)
128 PF00529 HlyD: HlyD family sec 91.8 0.16 3.4E-06 46.3 3.4 33 202-244 2-34 (305)
129 COG0845 AcrA Membrane-fusion p 91.8 0.39 8.4E-06 43.5 5.8 44 237-281 56-99 (372)
130 TIGR03794 NHPM_micro_HlyD NHPM 91.6 0.25 5.5E-06 48.4 4.7 34 249-282 254-287 (421)
131 PRK14042 pyruvate carboxylase 91.3 0.27 5.9E-06 51.3 4.8 34 249-282 526-559 (596)
132 PRK10255 PTS system N-acetyl g 91.2 0.64 1.4E-05 49.1 7.4 67 201-281 498-603 (648)
133 PRK09824 PTS system beta-gluco 91.2 0.45 9.8E-06 50.0 6.3 64 203-280 480-582 (627)
134 TIGR01995 PTS-II-ABC-beta PTS 90.9 0.62 1.4E-05 48.7 7.1 65 203-281 464-567 (610)
135 TIGR00164 PS_decarb_rel phosph 90.9 0.6 1.3E-05 41.6 6.0 49 226-278 135-183 (189)
136 PRK14040 oxaloacetate decarbox 90.4 0.39 8.5E-06 50.1 5.0 35 248-282 524-558 (593)
137 TIGR01108 oadA oxaloacetate de 90.1 0.4 8.7E-06 49.9 4.8 34 249-282 518-551 (582)
138 PRK05305 phosphatidylserine de 90.1 0.72 1.6E-05 41.6 5.9 48 226-277 155-202 (206)
139 PLN02983 biotin carboxyl carri 89.4 0.49 1.1E-05 45.0 4.3 32 251-282 200-238 (274)
140 PRK09282 pyruvate carboxylase 89.4 0.51 1.1E-05 49.2 4.9 34 249-282 523-556 (592)
141 COG1726 NqrA Na+-transporting 88.8 0.59 1.3E-05 46.4 4.6 41 225-268 43-85 (447)
142 TIGR00531 BCCP acetyl-CoA carb 88.7 0.65 1.4E-05 40.4 4.4 33 249-281 81-120 (156)
143 PRK14875 acetoin dehydrogenase 88.7 0.7 1.5E-05 42.9 4.9 36 201-246 45-80 (371)
144 PF07831 PYNP_C: Pyrimidine nu 87.8 0.75 1.6E-05 35.5 3.7 30 205-246 28-57 (75)
145 cd06849 lipoyl_domain Lipoyl d 87.7 1.1 2.3E-05 30.9 4.2 31 252-282 10-40 (74)
146 COG4770 Acetyl/propionyl-CoA c 87.6 0.68 1.5E-05 48.3 4.3 32 250-281 577-608 (645)
147 PRK06302 acetyl-CoA carboxylas 86.9 0.93 2E-05 39.3 4.3 33 201-243 123-155 (155)
148 PF02666 PS_Dcarbxylase: Phosp 86.7 1.2 2.7E-05 39.7 5.0 63 202-277 137-201 (202)
149 COG1566 EmrA Multidrug resista 86.6 0.82 1.8E-05 44.9 4.1 34 249-282 209-242 (352)
150 TIGR01000 bacteriocin_acc bact 86.4 1.1 2.3E-05 44.7 4.9 35 248-282 316-351 (457)
151 PRK12784 hypothetical protein; 86.2 0.92 2E-05 35.9 3.4 40 245-284 1-41 (84)
152 TIGR02712 urea_carbox urea car 85.8 1.1 2.3E-05 50.5 5.1 35 249-283 1133-1167(1201)
153 cd06663 Biotinyl_lipoyl_domain 85.0 1.8 3.8E-05 31.8 4.4 28 255-282 12-39 (73)
154 PLN02226 2-oxoglutarate dehydr 84.7 1.2 2.6E-05 45.3 4.4 35 201-245 134-168 (463)
155 PRK09439 PTS system glucose-sp 84.4 2.3 5.1E-05 37.7 5.6 24 221-244 102-125 (169)
156 TIGR01995 PTS-II-ABC-beta PTS 84.1 1.7 3.8E-05 45.4 5.4 59 221-279 544-609 (610)
157 PTZ00144 dihydrolipoamide succ 83.9 1.2 2.6E-05 44.7 4.0 63 204-282 13-84 (418)
158 PRK12999 pyruvate carboxylase; 83.9 1.4 3E-05 49.4 4.8 33 249-281 1077-1109(1146)
159 PRK09824 PTS system beta-gluco 82.3 2.5 5.3E-05 44.6 5.7 59 221-279 560-625 (627)
160 COG2190 NagE Phosphotransferas 80.7 3.1 6.8E-05 36.7 4.9 24 222-245 88-111 (156)
161 PF06898 YqfD: Putative stage 78.4 29 0.00063 34.2 11.4 104 90-260 139-245 (385)
162 KOG0368 Acetyl-CoA carboxylase 78.3 2.8 6E-05 48.3 4.6 53 229-281 666-718 (2196)
163 COG1038 PycA Pyruvate carboxyl 77.5 2 4.4E-05 46.8 3.2 68 202-281 1044-1112(1149)
164 PRK03934 phosphatidylserine de 76.9 4.7 0.0001 37.9 5.2 75 202-279 185-265 (265)
165 KOG0369 Pyruvate carboxylase [ 75.6 2.3 5E-05 45.6 3.0 31 250-280 1108-1138(1176)
166 PRK10255 PTS system N-acetyl g 75.4 5.4 0.00012 42.3 5.7 45 202-246 536-605 (648)
167 PRK05704 dihydrolipoamide succ 75.2 4.3 9.2E-05 40.5 4.7 36 201-246 45-80 (407)
168 TIGR00830 PTBA PTS system, glu 74.0 2.3 5E-05 35.8 2.1 24 221-244 80-103 (121)
169 PRK02597 rpoC2 DNA-directed RN 73.9 8.2 0.00018 44.1 6.9 59 222-280 402-507 (1331)
170 TIGR00999 8a0102 Membrane Fusi 73.7 4.6 9.9E-05 36.3 4.1 32 202-243 89-120 (265)
171 COG0845 AcrA Membrane-fusion p 73.2 4.2 9.1E-05 36.8 3.7 33 202-244 67-99 (372)
172 PRK03140 phosphatidylserine de 72.9 4.5 9.8E-05 37.9 4.0 64 202-278 194-257 (259)
173 KOG0559 Dihydrolipoamide succi 72.9 2.9 6.4E-05 41.7 2.8 35 201-245 115-149 (457)
174 PRK14844 bifunctional DNA-dire 72.7 5.1 0.00011 48.5 5.1 34 222-257 2421-2454(2836)
175 TIGR02876 spore_yqfD sporulati 72.6 57 0.0012 32.3 11.7 37 90-128 136-172 (382)
176 TIGR01347 sucB 2-oxoglutarate 72.0 5.9 0.00013 39.5 4.8 35 201-245 43-77 (403)
177 COG0508 AceF Pyruvate/2-oxoglu 70.9 5.5 0.00012 39.7 4.3 36 201-246 45-80 (404)
178 COG4072 Uncharacterized protei 70.5 12 0.00025 32.8 5.6 52 202-263 92-144 (161)
179 cd00210 PTS_IIA_glc PTS_IIA, P 70.4 3.2 6.9E-05 35.1 2.1 25 220-244 79-103 (124)
180 cd06251 M14_ASTE_ASPA_like_1 A 70.0 8.4 0.00018 36.2 5.1 36 247-283 218-253 (287)
181 PF00358 PTS_EIIA_1: phosphoen 68.6 2.9 6.4E-05 35.6 1.6 28 220-247 83-110 (132)
182 PLN02744 dihydrolipoyllysine-r 67.1 6.1 0.00013 41.1 3.8 29 255-283 125-153 (539)
183 TIGR03309 matur_yqeB selenium- 66.4 7.7 0.00017 36.8 4.0 35 246-281 162-196 (256)
184 COG3608 Predicted deacylase [G 66.3 6.8 0.00015 38.4 3.8 32 250-282 258-289 (331)
185 PF07831 PYNP_C: Pyrimidine nu 66.2 8.1 0.00018 29.7 3.5 29 254-284 30-58 (75)
186 PRK11637 AmiB activator; Provi 65.9 17 0.00037 36.0 6.6 14 202-215 340-353 (428)
187 PLN02528 2-oxoisovalerate dehy 65.0 10 0.00023 37.9 4.9 36 201-246 41-76 (416)
188 cd06255 M14_ASTE_ASPA_like_5 A 65.0 12 0.00026 35.4 5.1 36 248-284 231-266 (293)
189 KOG0238 3-Methylcrotonyl-CoA c 64.9 5.7 0.00012 41.4 3.0 30 251-280 604-633 (670)
190 PF09891 DUF2118: Uncharacteri 63.4 6.6 0.00014 34.4 2.8 43 231-284 74-116 (150)
191 PF01551 Peptidase_M23: Peptid 62.9 42 0.0009 25.7 7.0 23 259-281 52-74 (96)
192 TIGR01349 PDHac_trf_mito pyruv 61.1 12 0.00027 37.6 4.6 35 201-245 42-77 (435)
193 PF02749 QRPTase_N: Quinolinat 60.8 7.4 0.00016 30.3 2.4 20 225-244 49-68 (88)
194 PF12700 HlyD_2: HlyD family s 60.6 8.4 0.00018 35.4 3.1 41 203-245 136-193 (328)
195 cd06253 M14_ASTE_ASPA_like_3 A 60.6 15 0.00033 34.9 4.9 35 248-283 229-263 (298)
196 PRK10871 nlpD lipoprotein NlpD 60.5 23 0.00049 34.6 6.2 23 261-283 271-293 (319)
197 PF01551 Peptidase_M23: Peptid 60.1 8 0.00017 29.8 2.5 23 223-245 53-75 (96)
198 COG4942 Membrane-bound metallo 59.7 17 0.00036 36.9 5.2 62 202-282 332-393 (420)
199 TIGR02645 ARCH_P_rylase putati 59.2 17 0.00036 37.6 5.2 44 240-283 405-472 (493)
200 PF02749 QRPTase_N: Quinolinat 58.7 11 0.00024 29.3 3.1 25 257-281 44-68 (88)
201 PRK11856 branched-chain alpha- 58.6 16 0.00035 36.0 4.9 35 202-246 46-80 (411)
202 PF06898 YqfD: Putative stage 57.7 12 0.00026 36.9 3.8 65 198-279 156-227 (385)
203 PRK04192 V-type ATP synthase s 57.1 21 0.00046 37.6 5.7 54 224-281 121-179 (586)
204 cd06250 M14_PaAOTO_like An unc 57.0 19 0.00042 35.2 5.1 35 249-284 290-324 (359)
205 PF05896 NQRA: Na(+)-transloca 56.8 7.5 0.00016 36.9 2.1 30 251-280 32-61 (257)
206 TIGR02971 heterocyst_DevB ABC 56.6 28 0.0006 32.6 5.9 32 201-243 204-235 (327)
207 cd06254 M14_ASTE_ASPA_like_4 A 55.2 23 0.0005 33.2 5.1 36 247-283 222-257 (288)
208 TIGR02876 spore_yqfD sporulati 54.7 13 0.00028 36.8 3.5 65 198-278 152-223 (382)
209 COG4072 Uncharacterized protei 53.1 28 0.00061 30.5 4.8 42 233-285 87-128 (161)
210 TIGR00163 PS_decarb phosphatid 53.1 22 0.00048 32.8 4.6 47 230-277 189-235 (238)
211 PRK14698 V-type ATP synthase s 53.0 21 0.00046 39.9 5.1 55 225-281 122-179 (1017)
212 PRK04350 thymidine phosphoryla 53.0 25 0.00054 36.3 5.3 42 242-283 399-464 (490)
213 PRK10871 nlpD lipoprotein NlpD 52.5 22 0.00048 34.7 4.7 43 202-244 230-291 (319)
214 KOG2419 Phosphatidylserine dec 51.9 9.7 0.00021 40.8 2.2 32 201-243 885-916 (975)
215 cd06910 M14_ASTE_ASPA_like_7 A 51.6 27 0.00059 32.6 5.0 46 226-278 225-271 (272)
216 TIGR03327 AMP_phos AMP phospho 49.9 29 0.00063 35.9 5.2 42 242-283 408-473 (500)
217 cd06848 GCS_H Glycine cleavage 48.9 22 0.00047 28.0 3.3 30 254-283 26-56 (96)
218 COG1155 NtpA Archaeal/vacuolar 47.6 53 0.0011 34.6 6.6 60 223-283 118-179 (588)
219 cd06252 M14_ASTE_ASPA_like_2 A 46.9 36 0.00079 32.4 5.1 35 248-283 244-278 (316)
220 TIGR02994 ectoine_eutE ectoine 46.8 30 0.00066 33.4 4.6 31 250-281 257-287 (325)
221 cd01134 V_A-ATPase_A V/A-type 46.5 66 0.0014 32.2 6.9 55 225-281 53-110 (369)
222 PRK00044 psd phosphatidylserin 44.8 22 0.00048 33.8 3.3 50 229-280 236-286 (288)
223 PRK11892 pyruvate dehydrogenas 43.7 29 0.00063 35.3 4.1 34 202-245 46-80 (464)
224 KOG1668 Elongation factor 1 be 42.8 17 0.00037 34.0 2.1 36 207-250 172-207 (231)
225 PRK05820 deoA thymidine phosph 42.1 44 0.00096 34.0 5.1 23 261-283 384-406 (440)
226 TIGR02644 Y_phosphoryl pyrimid 42.0 49 0.0011 33.3 5.3 23 261-283 377-399 (405)
227 TIGR02643 T_phosphoryl thymidi 41.3 43 0.00094 34.1 4.8 38 245-282 336-404 (437)
228 TIGR02388 rpoC2_cyan DNA-direc 40.2 59 0.0013 37.2 6.1 39 222-260 402-447 (1227)
229 PRK09603 bifunctional DNA-dire 38.1 30 0.00066 42.5 3.6 23 221-243 2612-2634(2890)
230 KOG0557 Dihydrolipoamide acety 36.4 31 0.00067 35.4 3.0 29 255-283 51-79 (470)
231 CHL00117 rpoC2 RNA polymerase 36.2 34 0.00075 39.5 3.6 40 221-260 402-449 (1364)
232 COG0157 NadC Nicotinate-nucleo 35.3 28 0.00061 33.5 2.3 20 225-244 68-87 (280)
233 PRK06078 pyrimidine-nucleoside 35.1 69 0.0015 32.6 5.2 21 261-281 379-399 (434)
234 TIGR02643 T_phosphoryl thymidi 34.8 29 0.00062 35.4 2.4 22 223-244 382-403 (437)
235 COG0739 NlpD Membrane proteins 34.8 29 0.00063 31.1 2.3 20 224-243 215-234 (277)
236 PRK06149 hypothetical protein; 34.2 56 0.0012 36.1 4.7 39 202-244 443-496 (972)
237 TIGR01042 V-ATPase_V1_A V-type 33.8 83 0.0018 33.4 5.6 54 226-281 123-179 (591)
238 PRK05820 deoA thymidine phosph 33.7 31 0.00067 35.1 2.5 24 222-245 382-405 (440)
239 PRK02597 rpoC2 DNA-directed RN 32.2 64 0.0014 37.3 4.8 22 221-242 948-969 (1331)
240 PRK06078 pyrimidine-nucleoside 32.0 34 0.00073 34.8 2.4 25 222-246 377-401 (434)
241 PRK09603 bifunctional DNA-dire 31.7 76 0.0017 39.3 5.5 20 262-281 2616-2635(2890)
242 TIGR02645 ARCH_P_rylase putati 31.2 32 0.0007 35.5 2.2 45 201-245 413-471 (493)
243 PTZ00403 phosphatidylserine de 31.1 92 0.002 30.8 5.2 79 201-282 248-341 (353)
244 TIGR01043 ATP_syn_A_arch ATP s 31.0 94 0.002 32.9 5.5 54 225-280 119-175 (578)
245 PRK04350 thymidine phosphoryla 30.8 34 0.00073 35.4 2.2 45 201-245 405-463 (490)
246 PRK10718 RpoE-regulated lipopr 30.8 81 0.0018 28.8 4.4 43 227-270 70-115 (191)
247 TIGR02644 Y_phosphoryl pyrimid 29.1 40 0.00087 33.9 2.4 24 222-245 375-398 (405)
248 TIGR03327 AMP_phos AMP phospho 29.0 39 0.00085 35.0 2.3 45 201-245 414-472 (500)
249 cd01572 QPRTase Quinolinate ph 27.1 50 0.0011 31.1 2.5 27 256-282 56-82 (268)
250 PRK13380 glycine cleavage syst 26.6 75 0.0016 27.4 3.3 34 249-282 36-70 (144)
251 PF01333 Apocytochr_F_C: Apocy 26.1 30 0.00065 29.3 0.7 20 221-240 42-61 (118)
252 PF01848 HOK_GEF: Hok/gef fami 25.8 1.8E+02 0.0039 20.4 4.5 28 98-125 12-39 (43)
253 PF02666 PS_Dcarbxylase: Phosp 25.5 43 0.00092 29.8 1.7 19 223-241 184-202 (202)
254 PRK11649 putative peptidase; P 24.1 81 0.0018 31.9 3.5 20 224-243 364-383 (439)
255 TIGR03077 not_gcvH glycine cle 23.7 1E+02 0.0022 25.4 3.5 30 254-283 27-57 (110)
256 PRK14844 bifunctional DNA-dire 23.6 1.5E+02 0.0034 36.8 6.0 81 201-283 2300-2445(2836)
257 cd01572 QPRTase Quinolinate ph 22.8 64 0.0014 30.4 2.4 20 225-244 62-81 (268)
258 PF06572 DUF1131: Protein of u 22.6 75 0.0016 28.6 2.6 43 228-270 50-95 (171)
259 TIGR00164 PS_decarb_rel phosph 22.2 4.1E+02 0.009 23.5 7.3 79 200-280 71-152 (189)
260 PRK05848 nicotinate-nucleotide 21.7 99 0.0021 29.4 3.4 26 257-282 57-82 (273)
261 PRK09738 small toxic polypepti 21.2 2.4E+02 0.0052 20.7 4.5 29 98-126 17-45 (52)
262 PRK08072 nicotinate-nucleotide 21.0 72 0.0016 30.4 2.3 21 224-244 67-87 (277)
263 cd03695 CysN_NodQ_II CysN_NodQ 20.8 2.2E+02 0.0047 21.6 4.6 60 208-277 18-80 (81)
264 PLN02938 phosphatidylserine de 20.5 1.7E+02 0.0037 29.8 5.0 53 229-281 363-427 (428)
265 PRK09759 small toxic polypepti 20.5 2.6E+02 0.0057 20.3 4.6 29 98-126 15-43 (50)
266 cd01573 modD_like ModD; Quinol 20.4 1.2E+02 0.0025 28.7 3.6 26 257-282 55-80 (272)
267 PRK00624 glycine cleavage syst 20.0 1.3E+02 0.0029 24.9 3.5 31 253-283 28-59 (114)
No 1
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.97 E-value=3.2e-30 Score=222.61 Aligned_cols=156 Identities=29% Similarity=0.555 Sum_probs=109.9
Q ss_pred CChhHHHHHHHHHHhcCCccEEEEEeCCEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023091 93 IFPSGFEALMLEVCDETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPSPPKPY 172 (287)
Q Consensus 93 ~~~~~i~~LLie~~d~S~l~Elel~~~d~~L~L~R~~~~~~~~~p~~~~sp~~~~~~~~~p~~~~a~~a~~~~~~~~~~~ 172 (287)
|..++|++| +++|++|+|+||+|+.+|++|+|+|+...... +..+ + . .++.. .+ ++.... ..++.+
T Consensus 1 Md~~~Ik~L-i~~~~~s~l~elei~~~~~~l~l~k~~~~~~~--~~~~-~-~-~~~~~-~~----~~~~~~--~~~~~~- 66 (156)
T TIGR00531 1 MNIREIKEL-IKLIEESGITELELKEEEFEVRLSKAAAAAKK--SAVQ-Q-A-AAPVP-AQ----VPAAPS--AQAPAP- 66 (156)
T ss_pred CCHHHHHHH-HHHHHHCCCcEEEEEeCCEEEEEEecCCCCcc--cccc-c-c-CCCcc-cc----CCCCCC--CCCCCC-
Confidence 346789998 69999999999999999999999996421111 0000 0 0 00000 00 000000 000000
Q ss_pred CcccCCccccccCcchhhhhhhhcCCCCceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeee
Q 023091 173 SEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVK 252 (287)
Q Consensus 173 ~e~~~p~~~~~~~~~~~~~a~~a~~~~~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~ 252 (287)
....+ + ....+.+...|+|||+|+||+.|+ |+.+|||++||.|++||+||+||+||++++|+
T Consensus 67 -~~~~~-------------~-~~~~~~~~~~v~sp~~G~~~~~~~---P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~ 128 (156)
T TIGR00531 67 -AVCAP-------------A-PAKADKKGHFVRSPMVGTFYRAPS---PDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIE 128 (156)
T ss_pred -CCCCC-------------C-cccccCCCCEEeCCCCEEEEecCC---CCCCccccCCCEeCCCCEEEEEEecccceEEe
Confidence 00000 0 000112335799999999999976 79999999999999999999999999999999
Q ss_pred cCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 253 SDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 253 Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
|+++|+|++|++++|+.|+|||+||+|+
T Consensus 129 A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 129 AEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred cCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 9999999999999999999999999984
No 2
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.97 E-value=2.2e-29 Score=217.12 Aligned_cols=155 Identities=30% Similarity=0.540 Sum_probs=109.6
Q ss_pred CChhHHHHHHHHHHhcCCccEEEEEeCCEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023091 93 IFPSGFEALMLEVCDETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPSPPKPY 172 (287)
Q Consensus 93 ~~~~~i~~LLie~~d~S~l~Elel~~~d~~L~L~R~~~~~~~~~p~~~~sp~~~~~~~~~p~~~~a~~a~~~~~~~~~~~ 172 (287)
|..++|++| +++|++|+|+||+|+.+|++|+|+|+...... +... .+. ..+....+. + .++ . ...+.
T Consensus 1 Md~~~I~~L-i~~~~~s~l~ele~~~~~~~i~l~k~~~~~~~--~~~~-~~~-~~p~~~~~~----~-~~~--~-~~~~~ 67 (155)
T PRK06302 1 MDIRKIKKL-IELVDESGISEFEIKEGEESVRISRAAAAPVA--PVAQ-QAA-AAPVAAAPA----A-AAA--A-AAAPA 67 (155)
T ss_pred CCHHHHHHH-HHHHHHCCCeEEEEEcCCEEEEEEeCCCCCcc--cccc-ccc-cCCCCCCCC----C-CCc--c-ccCCC
Confidence 346789998 69999999999999999999999996421100 0000 000 000000000 0 000 0 00000
Q ss_pred CcccCCccccccCcchhhhhhhhcCCCCceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeee
Q 023091 173 SEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVK 252 (287)
Q Consensus 173 ~e~~~p~~~~~~~~~~~~~a~~a~~~~~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~ 252 (287)
..+ ..+. ...+...|+|||+|+||++|+ |+.+|||++||.|++||+||+||+||++++|+
T Consensus 68 ---~~~-------------~~~~-~~~~~~~v~sp~~G~~~~~~s---P~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~ 127 (155)
T PRK06302 68 ---AAP-------------AAAA-AEAEGHVVTSPMVGTFYRAPS---PDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIE 127 (155)
T ss_pred ---CCC-------------CCCc-cCCCCCEEeCCcCEEEEecCC---CCCCcccCCCCEeCCCCEEEEEEecccceEEe
Confidence 000 0000 011235799999999999976 79999999999999999999999999999999
Q ss_pred cCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 253 SDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 253 Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
|+++|+|+++++++|+.|+|||+||+|+
T Consensus 128 a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 128 ADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred cCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 9999999999999999999999999984
No 3
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.95 E-value=2.6e-27 Score=201.02 Aligned_cols=71 Identities=32% Similarity=0.586 Sum_probs=68.0
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
...|+|||+|+||+. ||++||+|++||+||+||+|||+|+|.||.+|+|.+|++++||.|+|||+|++|+
T Consensus 70 ~~~V~SPm~Gtv~~~----------~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 70 GTQVTSPMVGTVYKP----------FVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred CceEecCcceEEEEE----------eeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 467999999999983 9999999999999999999999999999999999999999999999999999997
Q ss_pred c
Q 023091 281 P 281 (287)
Q Consensus 281 p 281 (287)
+
T Consensus 140 ~ 140 (140)
T COG0511 140 P 140 (140)
T ss_pred C
Confidence 4
No 4
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.93 E-value=8.7e-25 Score=202.36 Aligned_cols=171 Identities=25% Similarity=0.480 Sum_probs=115.2
Q ss_pred CChhHHHHHHHHHHhcCCccEEEEEeCCEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023091 93 IFPSGFEALMLEVCDETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPSPPKPY 172 (287)
Q Consensus 93 ~~~~~i~~LLie~~d~S~l~Elel~~~d~~L~L~R~~~~~~~~~p~~~~sp~~~~~~~~~p~~~~a~~a~~~~~~~~~~~ 172 (287)
.|..++..| ++++|..||.||+|++-|++|-|||.......+.+.....-..+.+....|....+ ..++ +.++...
T Consensus 104 ~f~~qv~~l-v~lv~~~di~e~~lk~~~~e~~irkkeal~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~--~~~~~~~ 179 (274)
T PLN02983 104 EFMTQVSSL-VKLVDSRDIVELQLKQLDCELVIRKKEALPQPPPPAPVVMMQPPPPHAMPPASPPA-AQPA--PSAPASS 179 (274)
T ss_pred HHHHHHHHH-HhhhccccceeeeccccceEEEEecccccCCCCCCCceEEecCCCcccCCCCCCcc-cCCC--CCCCCCC
Confidence 488889998 69999999999999999999999998654332101000000000000000100000 0000 0000000
Q ss_pred CcccCCccccccCcchhhhhhhhcCCCCceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeee
Q 023091 173 SEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVK 252 (287)
Q Consensus 173 ~e~~~p~~~~~~~~~~~~~a~~a~~~~~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~ 252 (287)
...++ . ..+......+....|+|||.|+||+.|. ++..|+|++||.|++||+||+||+||++++|+
T Consensus 180 -~~~~~--------~--~~~~~~~~~s~~~~V~APmaGtf~r~p~---pge~w~VkvGDsVkkGQvLavIEAMKmeieV~ 245 (274)
T PLN02983 180 -PPPTP--------A--SPPPAKAPKSSHPPLKSPMAGTFYRSPA---PGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIE 245 (274)
T ss_pred -CCCCC--------C--CCCCCCCCcCCCCeEeCCcCeEEEeccC---CCCcceeCCCCEecCCCEEEEEEeeceeeEEe
Confidence 00000 0 0000112334567899999999999875 67899999999999999999999999999999
Q ss_pred cCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 253 SDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 253 Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
|+++|+|++|++++||.|.+||+||+|++
T Consensus 246 AP~sGtV~eIlVkeGD~V~vGqpL~~IEP 274 (274)
T PLN02983 246 ADQSGTIVEILAEDGKPVSVDTPLFVIEP 274 (274)
T ss_pred cCCCeEEEEEecCCCCEeCCCCEEEEecC
Confidence 99999999999999999999999999975
No 5
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.73 E-value=8.6e-18 Score=127.78 Aligned_cols=73 Identities=23% Similarity=0.473 Sum_probs=69.3
Q ss_pred EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091 203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279 (287)
Q Consensus 203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I 279 (287)
.|++|+.|.+++.+ ...+|+|++||.|++||+||.||+||+..+|+||.+|+|.++++++|+.|.+|++|++|
T Consensus 2 ~i~~P~~G~~~~~~----~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 2 EIKAPMLGEVMEEG----TITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEESSSSEEEEEE----EEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred EEECCCCccEEEec----ceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 69999999999964 46789999999999999999999999999999999999999999999999999999986
No 6
>PRK07051 hypothetical protein; Validated
Probab=99.68 E-value=3.8e-16 Score=120.51 Aligned_cols=76 Identities=26% Similarity=0.513 Sum_probs=71.9
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
..|+||+.|+||+.+. +..++++++||.|++||+||.||+||+..+|+|+.+|+|.++++++|+.|..||+|++|.
T Consensus 4 ~~~~ap~~g~~~~~~~---~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 4 HEIVSPLPGTFYRRPS---PDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cEEeCCCceEEEecCC---CCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 4699999999999865 578999999999999999999999999999999999999999999999999999999984
No 7
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.68 E-value=2.8e-16 Score=118.35 Aligned_cols=68 Identities=32% Similarity=0.455 Sum_probs=65.5
Q ss_pred EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
.|+||+.|+++++ +|++||.|++||+||.||+||+..+|+||.+|+|.++++++|+.|..|++|++|.
T Consensus 4 ~v~a~~~G~i~~~----------~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 4 DVRAEIVASVLEV----------VVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred EEeCCCCEEEEEE----------EeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 5999999999986 8999999999999999999999999999999999999999999999999999873
No 8
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.63 E-value=1.7e-15 Score=113.34 Aligned_cols=68 Identities=31% Similarity=0.549 Sum_probs=65.5
Q ss_pred EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
.|.||+.|+|+++ ++++||.|++||+||.||+||+..+|.++.+|+|.++++++|+.|..||+|++|+
T Consensus 3 ~i~a~~~G~i~~~----------~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 3 KVYASMAGNVWKI----------VVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred eEeCCCCEEEEEE----------EeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 5899999999986 8999999999999999999999999999999999999999999999999999985
No 9
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.63 E-value=1.9e-14 Score=121.56 Aligned_cols=71 Identities=27% Similarity=0.353 Sum_probs=67.2
Q ss_pred CceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091 200 GYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279 (287)
Q Consensus 200 ~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I 279 (287)
+...|+||+.|+++++ +|++||.|++||.|++||+|||.++|.||++|+|.++++++||.|..|++|++|
T Consensus 60 ~~~~v~Ap~~G~V~~i----------~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 60 GADAMPSPMPGTILKV----------LVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCcEEECCCCEEEEEE----------EeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 3467999999999986 899999999999999999999999999999999999999999999999999987
Q ss_pred e
Q 023091 280 L 280 (287)
Q Consensus 280 ~ 280 (287)
.
T Consensus 130 ~ 130 (130)
T PRK06549 130 G 130 (130)
T ss_pred C
Confidence 3
No 10
>PRK06748 hypothetical protein; Validated
Probab=99.61 E-value=4.4e-15 Score=116.72 Aligned_cols=71 Identities=20% Similarity=0.293 Sum_probs=66.8
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe-cCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ-FGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa-mK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I 279 (287)
+..|+|||.|++.+| ++++||.|++||+|+.||+ +|.+.+|+||.+|+|.+++++.||.|..|++|++|
T Consensus 4 ~~~v~sp~~G~I~~w----------~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I 73 (83)
T PRK06748 4 IEGVYSPCYGKVEKL----------FVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITV 73 (83)
T ss_pred eeEEecCCcEEEEEE----------EeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEE
Confidence 457999999999986 8999999999999999999 67888999999999999999999999999999999
Q ss_pred ec
Q 023091 280 LP 281 (287)
Q Consensus 280 ~p 281 (287)
+.
T Consensus 74 ~~ 75 (83)
T PRK06748 74 RD 75 (83)
T ss_pred EC
Confidence 74
No 11
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.59 E-value=4.3e-14 Score=122.33 Aligned_cols=69 Identities=32% Similarity=0.485 Sum_probs=66.2
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
..|+||+.|++++| +|++||.|++||.|++||+|||.++|+|+.+|+|.++++++|+.|..||+|++|.
T Consensus 85 ~~v~ap~~G~I~~~----------~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I~ 153 (153)
T PRK05641 85 NVVTAPMPGKILRI----------LVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIELG 153 (153)
T ss_pred CEEECCCCeEEEEE----------EeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEeC
Confidence 57999999999986 8999999999999999999999999999999999999999999999999999873
No 12
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.48 E-value=1.8e-13 Score=98.72 Aligned_cols=66 Identities=33% Similarity=0.555 Sum_probs=63.2
Q ss_pred EeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091 204 VFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279 (287)
Q Consensus 204 V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I 279 (287)
|+||+.|.|.++ +++.||.|++||.|+.|+++|+..+|+||.+|+|.++++++|+.|..|++|+.|
T Consensus 2 v~a~~~G~v~~~----------~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 2 VTAPMPGTVVKV----------LVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred ccCCccEEEEEE----------EeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 789999999875 899999999999999999999999999999999999999999999999999975
No 13
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.37 E-value=2.1e-12 Score=132.08 Aligned_cols=69 Identities=28% Similarity=0.336 Sum_probs=66.8
Q ss_pred EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
.|.|||.|+++++ +|++||.|++||+|++||+|||.++|+||.+|+|.++++++|+.|..|++|++|+.
T Consensus 527 ~v~apm~G~V~~~----------~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 527 DITVAIPGSIIAI----------HVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred eEecCcceEEEEE----------EeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 6999999999986 89999999999999999999999999999999999999999999999999999974
No 14
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.33 E-value=6.4e-12 Score=93.81 Aligned_cols=61 Identities=25% Similarity=0.427 Sum_probs=57.2
Q ss_pred ceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091 209 VGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279 (287)
Q Consensus 209 vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I 279 (287)
.|.|+++ ++++||.|++||.|+.||+||+..+|+||++|+|+++++++|+.|..|++|++|
T Consensus 13 ~g~~~~~----------~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 13 DGTVVKW----------LKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CEEEEEE----------EcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 4667764 899999999999999999999999999999999999999999999999999975
No 15
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.32 E-value=2.9e-12 Score=118.76 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=57.0
Q ss_pred CCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 223 QSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 223 ~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|+|++||.|++||+||.||+||+.++|+||.+|+|.++++++|+.|..||+|++|.+.
T Consensus 20 ~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~ 79 (371)
T PRK14875 20 AGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADA 79 (371)
T ss_pred EEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecC
Confidence 346999999999999999999999999999999999999999999999999999999753
No 16
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=99.30 E-value=8.6e-12 Score=127.57 Aligned_cols=70 Identities=34% Similarity=0.512 Sum_probs=67.4
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|+||+.|+|+++ +|++||.|++||+|+.||+|||.++|+||.+|+|.++++++|+.|++|++|++|+|
T Consensus 523 ~~V~Ap~~G~v~~~----------~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~~ 592 (592)
T PRK09282 523 GAVTSPMPGTVVKV----------KVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP 592 (592)
T ss_pred ceEeCCCcEEEEEE----------EeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEecC
Confidence 57999999999986 79999999999999999999999999999999999999999999999999999975
No 17
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.29 E-value=9.6e-12 Score=127.28 Aligned_cols=68 Identities=29% Similarity=0.503 Sum_probs=65.8
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I 279 (287)
..|+|||.|+++++ +|++||.|++||+||.||+|||.++|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 525 ~~V~Ap~~G~I~~~----------~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 525 EPVTAPLAGNIFKV----------IVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred ceEECCccEEEEEE----------EeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence 47999999999986 899999999999999999999999999999999999999999999999999987
No 18
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.27 E-value=1.3e-11 Score=134.74 Aligned_cols=72 Identities=33% Similarity=0.503 Sum_probs=68.2
Q ss_pred CCceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEE
Q 023091 199 NGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIA 278 (287)
Q Consensus 199 ~~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~ 278 (287)
.+...|.|||.|+++++ +|++||.|++||+||+||+|||.++|.||.+|+|+++++++|+.|..||+|+.
T Consensus 1130 ~~~~~v~a~~~G~v~~~----------~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~ 1199 (1201)
T TIGR02712 1130 EGAEQVESEYAGNFWKV----------LVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAV 1199 (1201)
T ss_pred CCCcEEeCCceEEEEEE----------EeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEE
Confidence 34578999999999986 89999999999999999999999999999999999999999999999999998
Q ss_pred Ee
Q 023091 279 VL 280 (287)
Q Consensus 279 I~ 280 (287)
|+
T Consensus 1200 i~ 1201 (1201)
T TIGR02712 1200 LE 1201 (1201)
T ss_pred eC
Confidence 74
No 19
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.26 E-value=1.2e-11 Score=126.40 Aligned_cols=65 Identities=32% Similarity=0.490 Sum_probs=62.6
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeE
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPL 276 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL 276 (287)
..|.|||+|+++++ +|++||.|++||+|++||+|||.++|.||.+|+|.++++++|+.|+.|++|
T Consensus 518 ~~v~ap~~G~v~~~----------~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 518 TPVTAPIAGSIVKV----------KVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred CeEeCCccEEEEEE----------EeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 46999999999986 899999999999999999999999999999999999999999999999976
No 20
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.25 E-value=1.5e-11 Score=122.51 Aligned_cols=77 Identities=19% Similarity=0.338 Sum_probs=66.0
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|+-|..|.-... +....|+|++||.|++||+||+||+||+.++|+||++|+|.+|++++||.|..|++|++|+.
T Consensus 92 ~~i~mP~lg~~~~e----G~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~ 167 (463)
T PLN02226 92 VEAVVPHMGESITD----GTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISK 167 (463)
T ss_pred eEEecCCCCCCcce----EEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence 46777777742221 23445799999999999999999999999999999999999999999999999999999974
Q ss_pred C
Q 023091 282 S 282 (287)
Q Consensus 282 ~ 282 (287)
.
T Consensus 168 ~ 168 (463)
T PLN02226 168 S 168 (463)
T ss_pred C
Confidence 3
No 21
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.22 E-value=3e-11 Score=131.30 Aligned_cols=70 Identities=17% Similarity=0.301 Sum_probs=66.6
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
...|.|||.|+++.+ +|++||.|++||+|++||+|||.++|+||.+|+|.++++++|+.|+.|++|+.|+
T Consensus 1074 ~~~I~a~~~G~v~~~----------~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1074 PAHVGAPMPGVIIEV----------KVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred CceeecCCCcEEEEE----------EeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 357999999999985 8999999999999999999999999999999999999999999999999999884
No 22
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.22 E-value=1.8e-11 Score=120.73 Aligned_cols=78 Identities=23% Similarity=0.374 Sum_probs=68.4
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
...|+-|..|.-... +....|+|++||.|++||+||.||+||+.++|+||++|+|.++++++|+.|..|++|++|.
T Consensus 44 i~~i~~P~lg~~~~e----g~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~ 119 (418)
T PTZ00144 44 IKVIKVPTMGDSISE----GTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEID 119 (418)
T ss_pred ceEEecCCCCCCcce----EEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEc
Confidence 357888887764332 2456689999999999999999999999999999999999999999999999999999997
Q ss_pred cC
Q 023091 281 PS 282 (287)
Q Consensus 281 p~ 282 (287)
..
T Consensus 120 ~~ 121 (418)
T PTZ00144 120 TG 121 (418)
T ss_pred CC
Confidence 54
No 23
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=99.21 E-value=2.4e-11 Score=122.70 Aligned_cols=70 Identities=24% Similarity=0.364 Sum_probs=66.7
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..+++||.|++... .|++|+.|.+||+|+++|+|||.|.|+||.+|+|.++.+..|+.|..|++|+++++
T Consensus 576 ~~l~aPMpG~v~~v----------~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~~ 645 (645)
T COG4770 576 GELLAPMPGTVVSV----------AVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFEE 645 (645)
T ss_pred CceecCCCceEEEE----------EecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEecC
Confidence 46999999999986 79999999999999999999999999999999999999999999999999999863
No 24
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.20 E-value=5e-11 Score=129.67 Aligned_cols=70 Identities=31% Similarity=0.496 Sum_probs=67.1
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|.|||.|++..+ +|++||.|++||+|++||+|||.++|+||.+|+|.++++++|+.|+.||.|+.|++
T Consensus 1077 ~~v~apm~G~v~~i----------~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~~ 1146 (1146)
T PRK12999 1077 GHVGAPMPGSVVTV----------LVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELEP 1146 (1146)
T ss_pred ceEeCCceEEEEEE----------EcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEcC
Confidence 57999999999985 89999999999999999999999999999999999999999999999999999864
No 25
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=99.14 E-value=6.3e-11 Score=116.27 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=68.3
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
+.|+-|..|.-+.. |....|++++||.|++||+|+.||++|...||.||++|+|.+|++++|+.|..|++|++|..
T Consensus 3 ~ei~mP~lge~~~E----G~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~ 78 (404)
T COG0508 3 IEIKMPDLGETMTE----GTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEE 78 (404)
T ss_pred ceEecCCCCCccce----EEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEec
Confidence 35777777763332 35667899999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 023091 282 SF 283 (287)
Q Consensus 282 ~~ 283 (287)
..
T Consensus 79 ~~ 80 (404)
T COG0508 79 EG 80 (404)
T ss_pred CC
Confidence 64
No 26
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.10 E-value=2.9e-10 Score=111.76 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=56.5
Q ss_pred CcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091 225 PICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
|+|++||.|++||.||.||+||+.++|+||++|+|.++++++|+.|..|++|++|+...
T Consensus 22 w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 22 WHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred EEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 59999999999999999999999999999999999999999999999999999998643
No 27
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.07 E-value=1.7e-10 Score=120.26 Aligned_cols=70 Identities=26% Similarity=0.401 Sum_probs=66.3
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
-..|-|||.|++... +|+.||.|++||+|.+||+|||...|.||++|+|.+++|.+|+.|+.|+.|+.++
T Consensus 1079 p~higApmpG~Vv~v----------~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1079 PGHIGAPMPGVVVEV----------KVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred ccccCCCCCCceEEE----------EEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 357999999999876 8999999999999999999999999999999999999999999999999999875
No 28
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.02 E-value=5.4e-10 Score=115.09 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=68.6
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
...|+-|..| ... +....|+|++||.|++||.||.||+||+.++|+||++|+|.+|++++|+.|..|++|+.|.
T Consensus 206 ~~~~~~p~lg-~~e-----g~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~ 279 (633)
T PRK11854 206 VKDVNVPDIG-GDE-----VEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFE 279 (633)
T ss_pred ceEEecCCCc-ccc-----eEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 3678899988 322 4567899999999999999999999999999999999999999999999999999999997
Q ss_pred cC
Q 023091 281 PS 282 (287)
Q Consensus 281 p~ 282 (287)
..
T Consensus 280 ~~ 281 (633)
T PRK11854 280 VE 281 (633)
T ss_pred cC
Confidence 53
No 29
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.02 E-value=5.5e-10 Score=113.33 Aligned_cols=77 Identities=21% Similarity=0.265 Sum_probs=70.8
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
...|+.|..|. ... +....|+|++||.|++||.||.||+||+.++|+|+++|+|.+++++.|+.|..|++|+.|.
T Consensus 116 ~~~~~~P~~g~-~~e----g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 190 (546)
T TIGR01348 116 VQEVTVPDIGD-IEK----VTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLS 190 (546)
T ss_pred ceEEeCCCCCC-cce----eEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEe
Confidence 36899999998 543 4678999999999999999999999999999999999999999999999999999999997
Q ss_pred cC
Q 023091 281 PS 282 (287)
Q Consensus 281 p~ 282 (287)
..
T Consensus 191 ~~ 192 (546)
T TIGR01348 191 VA 192 (546)
T ss_pred cC
Confidence 54
No 30
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=99.01 E-value=1.1e-09 Score=107.69 Aligned_cols=58 Identities=28% Similarity=0.329 Sum_probs=55.9
Q ss_pred CcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 225 PICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
|+|++||.|++||.||.||+||+.++|+|+++|+|.++++++|+.|..|++|++|+..
T Consensus 20 w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 20 WHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred EEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 5999999999999999999999999999999999999999999999999999999754
No 31
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.97 E-value=1.5e-09 Score=111.11 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=65.3
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|+-|..|.-... +....|+|++||.|++||.||.||+||+.++|+|+++|+|.+|++++|+.|..|++|++|..
T Consensus 136 ~~~~~P~lg~~~~e----g~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~ 211 (590)
T TIGR02927 136 TDIEMPELGESVTE----GTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGD 211 (590)
T ss_pred eEEEcCCCCCCcce----EEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEec
Confidence 56777776632111 13345699999999999999999999999999999999999999999999999999999975
Q ss_pred C
Q 023091 282 S 282 (287)
Q Consensus 282 ~ 282 (287)
.
T Consensus 212 ~ 212 (590)
T TIGR02927 212 A 212 (590)
T ss_pred C
Confidence 3
No 32
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.97 E-value=1e-09 Score=111.16 Aligned_cols=77 Identities=25% Similarity=0.311 Sum_probs=71.4
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
...|+.|..|. +.. +....|++++||.|++||.||.||+||+.++|+||++|+|.++++++|+.|..|++|+.|.
T Consensus 119 ~~~~~~P~~g~-~~e----g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~ 193 (547)
T PRK11855 119 VVEVKVPDIGE-ITE----VEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIE 193 (547)
T ss_pred ceEEecCCCCC-cce----eEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 46899999999 764 5678999999999999999999999999999999999999999999999999999999997
Q ss_pred cC
Q 023091 281 PS 282 (287)
Q Consensus 281 p~ 282 (287)
..
T Consensus 194 ~~ 195 (547)
T PRK11855 194 VA 195 (547)
T ss_pred cC
Confidence 53
No 33
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=98.97 E-value=1e-09 Score=112.99 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=65.3
Q ss_pred EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
.|+.|-.| +.. +....|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+.|..|++|+.|+..
T Consensus 4 ~i~~P~lg-~~e-----g~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 4 EIKVPDIG-ADE-----VEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred eEeeCCCC-Cce-----EEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence 46777777 221 245668999999999999999999999999999999999999999999999999999999765
No 34
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=98.85 E-value=1.8e-09 Score=104.58 Aligned_cols=76 Identities=28% Similarity=0.373 Sum_probs=65.0
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
++|.-|-.|.-... |...+|..++||.|++++.||.||++|+..+|.||.+|+|+++||++||.|+.||.||.|++
T Consensus 73 vtv~vP~faESite----G~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 73 VTVEVPPFAESITE----GDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred eEEecCCccccccc----chHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence 44555544443332 34566999999999999999999999999999999999999999999999999999999987
No 35
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=98.84 E-value=1.2e-08 Score=100.72 Aligned_cols=58 Identities=26% Similarity=0.409 Sum_probs=55.7
Q ss_pred CcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 225 PICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
|+|++||.|++||.||.+|+||+.+++.|+.+|+|.++++++|+.|..|++|++|...
T Consensus 18 w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~ 75 (416)
T PLN02528 18 WFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVE 75 (416)
T ss_pred EEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecc
Confidence 5999999999999999999999999999999999999999999999999999999743
No 36
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.80 E-value=3.7e-08 Score=69.67 Aligned_cols=64 Identities=28% Similarity=0.490 Sum_probs=58.5
Q ss_pred CCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091 206 SPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279 (287)
Q Consensus 206 AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I 279 (287)
++..|.+..+ +++.|+.+..|+.++.++++|+...+.++.+|+|.+..+.+|+.+..|++|++|
T Consensus 11 ~~~~g~i~~~----------~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 11 SMTEGTIVEW----------LVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCcEEEEEEE----------EECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 4555777664 899999999999999999999999999999999999999999999999999975
No 37
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.76 E-value=1.2e-08 Score=103.39 Aligned_cols=74 Identities=23% Similarity=0.308 Sum_probs=63.0
Q ss_pred EeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 204 VFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 204 V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
|+.|..|. ... +....|+|++||.|++||+||.||+||+..+|.|+++|+|.++++++|+.|..|++|+.|.+.
T Consensus 5 i~~p~~g~-~~~----g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~ 78 (547)
T PRK11855 5 FKVPDIGE-VVE----VEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAA 78 (547)
T ss_pred eecCCcCC-Cce----EEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEeccc
Confidence 45555554 221 234457999999999999999999999999999999999999999999999999999999743
No 38
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.75 E-value=2.6e-08 Score=101.30 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=59.8
Q ss_pred cceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 208 TVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 208 ~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|++.+ |+|++||.|++||+||.||+||+.++|.|+++|+|.+++++.|+.|..|++|++|..
T Consensus 12 ~~g~i~~----------~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~ 75 (546)
T TIGR01348 12 EEGEVIE----------VLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEV 75 (546)
T ss_pred CceEEEE----------EEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEec
Confidence 4567766 499999999999999999999999999999999999999999999999999999975
No 39
>PRK01202 glycine cleavage system protein H; Provisional
Probab=98.72 E-value=3.1e-08 Score=83.20 Aligned_cols=58 Identities=29% Similarity=0.501 Sum_probs=53.5
Q ss_pred cccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEE---ecCCCCeec---CCC-eEEEEecCC
Q 023091 226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKL---LFDDGDAVG---FGD-PLIAVLPSF 283 (287)
Q Consensus 226 ~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vvei---lv~dGd~Ve---~Gq-pL~~I~p~~ 283 (287)
+.++|+.|++||++|.||++|.+.+|.||++|+|+++ +.++.+.|+ ||+ +|++|++..
T Consensus 44 lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~ 108 (127)
T PRK01202 44 LPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSD 108 (127)
T ss_pred cCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCC
Confidence 3468999999999999999999999999999999999 788999998 987 999999754
No 40
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=98.69 E-value=6.2e-08 Score=94.71 Aligned_cols=59 Identities=32% Similarity=0.493 Sum_probs=56.2
Q ss_pred CCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 224 SPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 224 ~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
.|+|++||.|++||.||.||+||+.++|.||.+|+|.++++++|+.|..|++|++|...
T Consensus 21 ~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~ 79 (411)
T PRK11856 21 EWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEE 79 (411)
T ss_pred EEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecC
Confidence 35999999999999999999999999999999999999999999999999999999753
No 41
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=98.65 E-value=8.1e-08 Score=95.29 Aligned_cols=58 Identities=21% Similarity=0.363 Sum_probs=55.6
Q ss_pred CCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCe-ecCCCeEEEEec
Q 023091 224 SPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDA-VGFGDPLIAVLP 281 (287)
Q Consensus 224 ~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~-Ve~GqpL~~I~p 281 (287)
.|++++||.|++||.||.||++|+.++|.|+.+|+|.+++++.|+. |..|++|++|..
T Consensus 18 ~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~ 76 (435)
T TIGR01349 18 KWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVE 76 (435)
T ss_pred EEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEec
Confidence 3599999999999999999999999999999999999999999999 999999999964
No 42
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.63 E-value=3.9e-08 Score=101.53 Aligned_cols=70 Identities=27% Similarity=0.335 Sum_probs=66.1
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|-|||.|++... .|++|++|++||.||.+.+|||..-|.||.+|+|.++.+.+|+.|+.|+.++.|+.
T Consensus 1107 g~igAPMpG~viei----------kvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E~ 1176 (1176)
T KOG0369|consen 1107 GHIGAPMPGTVIEI----------KVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELEH 1176 (1176)
T ss_pred ccccCCCCCceEEE----------EEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEccC
Confidence 46999999999876 69999999999999999999999999999999999999999999999999998863
No 43
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=98.63 E-value=7.7e-08 Score=97.90 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=62.2
Q ss_pred EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCC-eecCCCeEEEEe
Q 023091 203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGD-AVGFGDPLIAVL 280 (287)
Q Consensus 203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd-~Ve~GqpL~~I~ 280 (287)
.|+-|-.|.-... +....|++++||.|++||+||.||++|..++|+++.+|+|.+|++++|+ .|..|++|++|.
T Consensus 114 ei~mP~lg~~m~e----g~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~ 188 (539)
T PLN02744 114 EIGMPSLSPTMTE----GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITV 188 (539)
T ss_pred eEeCCCCCCCcce----eEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEc
Confidence 4566665542221 2345579999999999999999999999999999999999999999996 799999999884
No 44
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.60 E-value=3.5e-08 Score=99.27 Aligned_cols=69 Identities=28% Similarity=0.423 Sum_probs=65.2
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
..+.+||.|.+... +|+.||+|++||.+|.+++|||.+-++||.+|+|..+.++.|+.|.-|.+|++++
T Consensus 602 ~v~~aPMpG~Iekv----------~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 602 GVIVAPMPGIIEKV----------LVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CceecCCCCeeeee----------eccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 46899999998875 9999999999999999999999999999999999999999999999999999863
No 45
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=98.57 E-value=1.7e-07 Score=77.31 Aligned_cols=58 Identities=26% Similarity=0.340 Sum_probs=50.7
Q ss_pred cccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEE---ecCCCCeec---CCC-eEEEEecCC
Q 023091 226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKL---LFDDGDAVG---FGD-PLIAVLPSF 283 (287)
Q Consensus 226 ~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vvei---lv~dGd~Ve---~Gq-pL~~I~p~~ 283 (287)
+-++|+.|++||.||.||++|+..+|.||++|+|+++ +.++-+.++ ||+ +|++|++..
T Consensus 37 lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~~P~lln~~py~~gWl~~v~~~~ 101 (110)
T TIGR03077 37 LPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDDTQPINHSPESEGWFVVVQLDE 101 (110)
T ss_pred CCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECC
Confidence 4478999999999999999999999999999999999 566666665 776 999999654
No 46
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=98.55 E-value=2.1e-07 Score=93.13 Aligned_cols=62 Identities=24% Similarity=0.356 Sum_probs=57.1
Q ss_pred CCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCC-eecCCCeEEEEecCCC
Q 023091 223 QSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGD-AVGFGDPLIAVLPSFH 284 (287)
Q Consensus 223 ~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd-~Ve~GqpL~~I~p~~~ 284 (287)
..|++++||.|++||.|+.||++|+..+|.|+.+|+|.+++++.|+ .|..|++|++|.....
T Consensus 20 ~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~ 82 (464)
T PRK11892 20 AKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE 82 (464)
T ss_pred EEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence 3469999999999999999999999999999999999999999995 7999999999976443
No 47
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.54 E-value=1e-07 Score=97.79 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=62.3
Q ss_pred EeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 204 VFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 204 V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
|+.|-.|.-... +....|+|++||.|+.||+||.||+||+.++|.|+.+|+|.++++++|+.|..|+.|++|..
T Consensus 5 i~~P~lg~~~~e----g~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~ 78 (590)
T TIGR02927 5 VEMPALGESVTE----GTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGE 78 (590)
T ss_pred EECCCCCCCccE----EEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEee
Confidence 556666631111 12345799999999999999999999999999999999999999999999999999998864
No 48
>PRK00624 glycine cleavage system protein H; Provisional
Probab=98.49 E-value=3.2e-07 Score=76.18 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=51.5
Q ss_pred cccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEE---ecCCCCeec---CCC-eEEEEecCC
Q 023091 226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKL---LFDDGDAVG---FGD-PLIAVLPSF 283 (287)
Q Consensus 226 ~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vvei---lv~dGd~Ve---~Gq-pL~~I~p~~ 283 (287)
+-++|+.|++||.||.||++|...+|.||++|+|+++ +.++-+.+. ||+ +|++|++..
T Consensus 39 lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~~ 103 (114)
T PRK00624 39 LPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALEDDIQPINNAPESEGWFVVVQLDE 103 (114)
T ss_pred CCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECC
Confidence 3488999999999999999999999999999999999 677777765 777 999999754
No 49
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=98.44 E-value=3.1e-07 Score=91.31 Aligned_cols=64 Identities=25% Similarity=0.386 Sum_probs=59.0
Q ss_pred CCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCC-CeecCCCeEEEEecCCCCC
Q 023091 223 QSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDG-DAVGFGDPLIAVLPSFHDI 286 (287)
Q Consensus 223 ~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dG-d~Ve~GqpL~~I~p~~~~~ 286 (287)
..|..++||++.+||+||.||++|...++++..+|.+.+||+++| ..|..|.+|+.|-....||
T Consensus 56 vsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive~e~di 120 (470)
T KOG0557|consen 56 VSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVEDEDDI 120 (470)
T ss_pred eeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEecccccH
Confidence 345889999999999999999999999999999999999999999 8899999999998766655
No 50
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=98.31 E-value=1.2e-06 Score=73.70 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=46.6
Q ss_pred cCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecC---CCCeec---CCC-eEEEEecCC
Q 023091 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFD---DGDAVG---FGD-PLIAVLPSF 283 (287)
Q Consensus 228 ~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~---dGd~Ve---~Gq-pL~~I~p~~ 283 (287)
++|+.|++||++|.||+||+..+|.||++|+|++++-. +-+.+. ||+ +|++|++..
T Consensus 45 ~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~~py~~gWl~~i~~~~ 107 (127)
T TIGR00527 45 EVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALEDSPELVNEDPYGGGWLIKVKLSD 107 (127)
T ss_pred CCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhhChHHHhCCCccCcEEEEEecCC
Confidence 68999999999999999999999999999999999732 223332 555 999999754
No 51
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.27 E-value=1.5e-06 Score=69.07 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=47.2
Q ss_pred CCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCC
Q 023091 206 SPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGD 268 (287)
Q Consensus 206 AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd 268 (287)
..+.|.++.. ++.++|+.|++||.||.||++|+..+|.||.+|+|++++.+-++
T Consensus 25 ~~~lG~i~~i---------~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~ 78 (96)
T cd06848 25 QDLLGDIVFV---------ELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLD 78 (96)
T ss_pred HhhCCCEEEE---------EecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhc
Confidence 3578888876 47788999999999999999999999999999999999865554
No 52
>PRK13380 glycine cleavage system protein H; Provisional
Probab=98.26 E-value=2.1e-06 Score=73.90 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=56.5
Q ss_pred EeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCC---Ceec---CCC-eE
Q 023091 204 VFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDG---DAVG---FGD-PL 276 (287)
Q Consensus 204 V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dG---d~Ve---~Gq-pL 276 (287)
....+.|.+...- +-++|+.|++||.++.||+||+..+|.||++|+|++++.+-. +.++ ||+ +|
T Consensus 38 ~aq~~lG~I~~v~---------lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl 108 (144)
T PRK13380 38 YAQTMAGDVVFVR---------LKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALEDSPELVNEDPYGEGWF 108 (144)
T ss_pred HHHHhcCCEEEEE---------cCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhhChHHhcCCCCCCCeE
Confidence 3456788876652 346899999999999999999999999999999999985433 2332 665 99
Q ss_pred EEEecCC
Q 023091 277 IAVLPSF 283 (287)
Q Consensus 277 ~~I~p~~ 283 (287)
++|++.+
T Consensus 109 ~~v~~~d 115 (144)
T PRK13380 109 FRFKPAN 115 (144)
T ss_pred EEEEECC
Confidence 9998764
No 53
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=98.18 E-value=1.1e-05 Score=79.04 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=62.1
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCc-ccCCCEEcCCCEEEEEEec----------------------------------
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPI-CKEGDVIKEGQTIGYLDQF---------------------------------- 245 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~-V~vGd~Vk~GqvL~iIEam---------------------------------- 245 (287)
...|.++..|.+.+. + +++||.|++||+|+.|+.-
T Consensus 123 ~~~v~arv~G~V~~l----------~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i 192 (409)
T PRK09783 123 YAIVQARAAGFIDKV----------YPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGM 192 (409)
T ss_pred eEEEeCCcCEEEEEE----------EecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCC
Confidence 467999999998875 5 8999999999999999821
Q ss_pred --------------CeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 246 --------------GTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 246 --------------K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
.....|+||++|+|.+..++.|+.|..|++||.|...
T Consensus 193 ~~~~i~~l~~~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~ 243 (409)
T PRK09783 193 PEADIRRLIATRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM 243 (409)
T ss_pred CHHHHHHHHHcCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEEcC
Confidence 0124799999999999999999999999999999654
No 54
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=98.14 E-value=9.2e-06 Score=76.00 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=32.2
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
..|+||++|+|..+.++.|+.|..|++|+.|.+.+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 239 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAE 239 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCC
Confidence 36999999999999999999999999999998653
No 55
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=98.05 E-value=1.3e-05 Score=73.61 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=61.6
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe----------------------------------
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT---------------------------------- 247 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~---------------------------------- 247 (287)
..|.+|..|.+... +|++||.|++||+|..|+.-..
T Consensus 27 ~~v~a~~~G~V~~i----------~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~ 96 (322)
T TIGR01730 27 ADLAAEVAGKITKI----------SVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKR 96 (322)
T ss_pred EEEEccccEEEEEE----------EcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 57999999999864 7999999999999999974211
Q ss_pred -------------------------------------eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 248 -------------------------------------ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 248 -------------------------------------~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
...|+||++|+|..+.+..|+.|..|++|+.|...
T Consensus 97 ~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 168 (322)
T TIGR01730 97 NAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDL 168 (322)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcC
Confidence 23699999999999999999999999999998754
No 56
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.98 E-value=2.4e-05 Score=74.42 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=32.0
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
..|+||++|+|.++.++.|+.|..|++|+.|.+.+
T Consensus 209 ~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~ 243 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTD 243 (346)
T ss_pred CEEECCCCcEEEeeecCCCCCcCCCCeEEEEecCC
Confidence 36999999999999999999999999999997653
No 57
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=97.91 E-value=2.3e-05 Score=66.74 Aligned_cols=58 Identities=19% Similarity=0.417 Sum_probs=50.3
Q ss_pred cccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCeec---CCC-eEEEEecCC
Q 023091 226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAVG---FGD-PLIAVLPSF 283 (287)
Q Consensus 226 ~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~Ve---~Gq-pL~~I~p~~ 283 (287)
+-++|+.|++|+.+|.||+-|.-.+|+||++|+|++++ .++-+.|+ ||+ +||+|++.+
T Consensus 46 lpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l~~~PeliN~dPyg~gWi~klk~~d 110 (131)
T COG0509 46 LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEALVDSPELINSDPYGEGWIVKLKPAD 110 (131)
T ss_pred cCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhhhcChhhhccCCCCCceEEEEeeCC
Confidence 45899999999999999999999999999999999997 44445555 786 999999875
No 58
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=97.85 E-value=7.3e-06 Score=79.69 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=68.3
Q ss_pred CCceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEE
Q 023091 199 NGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIA 278 (287)
Q Consensus 199 ~~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~ 278 (287)
.+.+.++--..|.-.+.- ...+|||++||.|.+=|.||.++++|...+|++-++|.|.+|.-+-+|....|++|..
T Consensus 62 ~gvv~f~LsdiGEGI~Ev----~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd 137 (474)
T KOG0558|consen 62 SGVVQFKLSDIGEGIAEV----TVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVD 137 (474)
T ss_pred cceEEEEhhhccccceee----eeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceee
Confidence 344556666667644432 3578999999999999999999999999999999999999999999999999999999
Q ss_pred EecC
Q 023091 279 VLPS 282 (287)
Q Consensus 279 I~p~ 282 (287)
++..
T Consensus 138 ~eve 141 (474)
T KOG0558|consen 138 LEVE 141 (474)
T ss_pred eeec
Confidence 8754
No 59
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=97.85 E-value=7e-05 Score=70.13 Aligned_cols=67 Identities=24% Similarity=0.274 Sum_probs=59.7
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
...|+||..|.|+. +++.||.|++||+|+.|.. ++|+||.+|+|. =++.||-.|..|.-|..|.
T Consensus 164 Er~IrAp~~Gi~~~-----------~~~IGd~V~KGqvLa~I~~----~~V~APidGIVr-GlirdG~~V~~G~Ki~dID 227 (256)
T TIGR03309 164 ERVLRAPADGIVTP-----------TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLR-GLIHEGLTVTEGLKIGDVD 227 (256)
T ss_pred eEEEECCCCeEEee-----------ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEE-EEecCCCCcCCCCEEEEEC
Confidence 36899999999985 6899999999999999975 799999999875 5578999999999999998
Q ss_pred cCC
Q 023091 281 PSF 283 (287)
Q Consensus 281 p~~ 283 (287)
|-.
T Consensus 228 PR~ 230 (256)
T TIGR03309 228 PRG 230 (256)
T ss_pred CCC
Confidence 754
No 60
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.85 E-value=5.6e-05 Score=71.55 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=62.0
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC----------------------------------
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG---------------------------------- 246 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK---------------------------------- 246 (287)
...|.++..|.+... +|++||.|++||+|+.|+.-.
T Consensus 47 ~v~i~~~v~G~V~~v----------~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~ 116 (310)
T PRK10559 47 VVAIAPDVSGLITQV----------NVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGV 116 (310)
T ss_pred EEEEccCCceEEEEE----------EeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467999999999875 799999999999999998521
Q ss_pred ------------------------------------eeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 247 ------------------------------------TELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 247 ------------------------------------~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
-...|+||++|+|.++.++.|+.|..|++|+.|-..
T Consensus 117 ~aiS~~~~d~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~ 188 (310)
T PRK10559 117 QAMSREEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQ 188 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeC
Confidence 024699999999999999999999999999987643
No 61
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.80 E-value=7e-05 Score=72.31 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=60.3
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe---------------------------------
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT--------------------------------- 247 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~--------------------------------- 247 (287)
...|.+++.|.+... +|++||.|++||+|+.|+....
T Consensus 63 ~~~l~~~v~G~V~~v----------~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~ 132 (385)
T PRK09578 63 QAEVRARVAGIVTAR----------TYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVR 132 (385)
T ss_pred EEEEeccCcEEEEEE----------ECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999775 7999999999999999985211
Q ss_pred --------------------------------------eeeeecCCCeEEEEEecCCCCeecCC--CeEEEEec
Q 023091 248 --------------------------------------ELPVKSDVAGEVLKLLFDDGDAVGFG--DPLIAVLP 281 (287)
Q Consensus 248 --------------------------------------~~eV~Ap~sG~Vveilv~dGd~Ve~G--qpL~~I~p 281 (287)
...|+||++|+|.+.+++.|+.|..| ++|+.|..
T Consensus 133 ~~~iS~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~ 206 (385)
T PRK09578 133 DRAVSERDYTEAVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQ 206 (385)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEe
Confidence 13799999999999999999999885 58998864
No 62
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.79 E-value=7.5e-05 Score=72.81 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=31.5
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|+||++|+|..+.++.|+.|..|++||.|-+.
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~ 249 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPA 249 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeC
Confidence 3699999999999999999999999999998764
No 63
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.78 E-value=7.1e-05 Score=70.63 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=31.5
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|+||++|+|..+.+..|+.|..|++|+.|.+.
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~ 237 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLT 237 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEecC
Confidence 4799999999999999999999999999999754
No 64
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.65 E-value=0.00017 Score=69.70 Aligned_cols=71 Identities=20% Similarity=0.175 Sum_probs=60.2
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC----------------------------------
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG---------------------------------- 246 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK---------------------------------- 246 (287)
...|.++..|.+.+. ++++||.|++||+|+.|+.-.
T Consensus 61 ~~~l~~~v~G~V~~i----------~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~ 130 (385)
T PRK09859 61 VAEIRPQVGGIIIKR----------NFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLK 130 (385)
T ss_pred EEEEeccCcEEEEEE----------EcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457999999998874 799999999999999998420
Q ss_pred -------------------------------------eeeeeecCCCeEEEEEecCCCCeecCCC--eEEEEec
Q 023091 247 -------------------------------------TELPVKSDVAGEVLKLLFDDGDAVGFGD--PLIAVLP 281 (287)
Q Consensus 247 -------------------------------------~~~eV~Ap~sG~Vveilv~dGd~Ve~Gq--pL~~I~p 281 (287)
-...|+||++|+|.+.+++.|+.|..|+ +||.|..
T Consensus 131 ~~~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~ 204 (385)
T PRK09859 131 TNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQR 204 (385)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEe
Confidence 1147999999999999999999999985 6888753
No 65
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.64 E-value=0.00019 Score=69.93 Aligned_cols=71 Identities=24% Similarity=0.235 Sum_probs=59.8
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe---------------------------------
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT--------------------------------- 247 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~--------------------------------- 247 (287)
...|.+...|.+.+. +|++||.|++||+|+.|+....
T Consensus 65 ~~~l~a~vsG~V~~v----------~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~ 134 (397)
T PRK15030 65 IAEVRPQVSGIILKR----------NFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLG 134 (397)
T ss_pred EEEEEecCcEEEEEE----------EcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999875 7999999999999999974210
Q ss_pred --------------------------------------eeeeecCCCeEEEEEecCCCCeecCCCe--EEEEec
Q 023091 248 --------------------------------------ELPVKSDVAGEVLKLLFDDGDAVGFGDP--LIAVLP 281 (287)
Q Consensus 248 --------------------------------------~~eV~Ap~sG~Vveilv~dGd~Ve~Gqp--L~~I~p 281 (287)
...|+||++|+|.+..++.|+.|..|++ ||.|..
T Consensus 135 ~g~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~ 208 (397)
T PRK15030 135 TQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQ 208 (397)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEe
Confidence 1359999999999999999999999985 787753
No 66
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.64 E-value=9.7e-05 Score=52.40 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=31.6
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|.++++|+|.++++++|+.|..||+|+++...
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~ 36 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSP 36 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcH
Confidence 4689999999999999999999999999999864
No 67
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=97.64 E-value=8.9e-05 Score=82.15 Aligned_cols=73 Identities=19% Similarity=0.392 Sum_probs=65.4
Q ss_pred CceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091 200 GYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279 (287)
Q Consensus 200 ~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I 279 (287)
+-..+++|..|++.+. .|+.|+.|.+||+-+.||.|||..++.|..+|+| ..+.++|+.++.|+.|+++
T Consensus 684 Dpt~LrsPs~GKLl~y----------lVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL 752 (2196)
T KOG0368|consen 684 DPTVLRSPSPGKLLQY----------LVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKL 752 (2196)
T ss_pred CcceecCCCCccceEE----------EecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEe
Confidence 3457899999999885 8999999999999999999999999999999976 5678999999999999998
Q ss_pred ecCC
Q 023091 280 LPSF 283 (287)
Q Consensus 280 ~p~~ 283 (287)
.-.+
T Consensus 753 ~lDd 756 (2196)
T KOG0368|consen 753 TLDD 756 (2196)
T ss_pred ecCC
Confidence 7443
No 68
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=97.62 E-value=0.00018 Score=60.05 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=43.4
Q ss_pred cccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCeec---C-CCeEEEEecCC
Q 023091 226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAVG---F-GDPLIAVLPSF 283 (287)
Q Consensus 226 ~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~Ve---~-GqpL~~I~p~~ 283 (287)
+-++|+.|++|+.+|.||+.|...++.||++|+|++++ .++-+.+. | ..+|+.|++.+
T Consensus 38 lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l~~~P~lln~~p~~~gWl~~i~~~d 102 (122)
T PF01597_consen 38 LPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEELLDNPELLNSDPYGDGWLIKIKPSD 102 (122)
T ss_dssp -B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHHHT-TTHHHHSTTTTTEEEEEEESC
T ss_pred EccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccccccChHHhccCCCCCCeEEEEEeCC
Confidence 45889999999999999999999999999999999997 33333332 5 44899999864
No 69
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.52 E-value=0.00028 Score=67.71 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=59.9
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe---------------------------------
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT--------------------------------- 247 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~--------------------------------- 247 (287)
...|.+++.|.+... ++++||.|++||+|+.|+....
T Consensus 61 ~~~l~a~~~G~V~~v----------~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~ 130 (370)
T PRK11578 61 KVDVGAQVSGQLKTL----------SVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLS 130 (370)
T ss_pred EEEEecccceEEEEE----------EcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999875 7999999999999999986210
Q ss_pred ----------------------------------------------------eeeeecCCCeEEEEEecCCCCeecCCC-
Q 023091 248 ----------------------------------------------------ELPVKSDVAGEVLKLLFDDGDAVGFGD- 274 (287)
Q Consensus 248 ----------------------------------------------------~~eV~Ap~sG~Vveilv~dGd~Ve~Gq- 274 (287)
...|+||++|+|.++.+..|+.|..|+
T Consensus 131 r~~~L~~~g~is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~ 210 (370)
T PRK11578 131 RQQRLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQ 210 (370)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccC
Confidence 126999999999999999999997764
Q ss_pred --eEEEEecC
Q 023091 275 --PLIAVLPS 282 (287)
Q Consensus 275 --pL~~I~p~ 282 (287)
+|+.|...
T Consensus 211 ~~~l~~i~~~ 220 (370)
T PRK11578 211 APNILTLADM 220 (370)
T ss_pred CceEEEEecC
Confidence 78887543
No 70
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.50 E-value=0.00064 Score=64.40 Aligned_cols=66 Identities=24% Similarity=0.228 Sum_probs=56.2
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe---cCeeeeeecCCCeEEEEEecCCCCeecCCCeEE
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ---FGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI 277 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa---mK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~ 277 (287)
...|+||..|.|+. .++.||.|++||+|+.|=. .....+|+||.+|+|.-+. ..-.|..|++|+
T Consensus 229 ~~~v~A~~~Gl~~~-----------~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~v~~G~~l~ 295 (298)
T cd06253 229 VVYVNAETSGIFVP-----------AKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPLVYEGSLVA 295 (298)
T ss_pred eEEEEcCCCeEEEE-----------CcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCeecCCceEE
Confidence 56899999999985 6899999999999998854 2346789999999998665 557899999999
Q ss_pred EE
Q 023091 278 AV 279 (287)
Q Consensus 278 ~I 279 (287)
+|
T Consensus 296 ~i 297 (298)
T cd06253 296 RI 297 (298)
T ss_pred Ee
Confidence 87
No 71
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.43 E-value=0.00041 Score=68.24 Aligned_cols=72 Identities=21% Similarity=0.267 Sum_probs=60.2
Q ss_pred CceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC---------------------------------
Q 023091 200 GYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG--------------------------------- 246 (287)
Q Consensus 200 ~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK--------------------------------- 246 (287)
+...|.++..|.+... ++++||.|++||+|+.|+...
T Consensus 86 ~~v~v~~~vsG~V~~i----------~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~ 155 (415)
T PRK11556 86 NTVTVRSRVDGQLMAL----------HFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLA 155 (415)
T ss_pred eEEEEEccccEEEEEE----------ECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999998875 799999999999999996421
Q ss_pred --------------------------------------eeeeeecCCCeEEEEEecCCCCeecCCC--eEEEEec
Q 023091 247 --------------------------------------TELPVKSDVAGEVLKLLFDDGDAVGFGD--PLIAVLP 281 (287)
Q Consensus 247 --------------------------------------~~~eV~Ap~sG~Vveilv~dGd~Ve~Gq--pL~~I~p 281 (287)
-...|+||++|+|..+.++.|+.|..|+ +|+.|..
T Consensus 156 ~~g~is~~~ld~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~ 230 (415)
T PRK11556 156 KTNLVSRQELDAQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQ 230 (415)
T ss_pred hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEec
Confidence 0237999999999999999999999984 7887753
No 72
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=97.38 E-value=0.00029 Score=64.87 Aligned_cols=32 Identities=41% Similarity=0.529 Sum_probs=23.5
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEE
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLD 243 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIE 243 (287)
...|.+|..|.+ .. +|++||.|++||+|+.|+
T Consensus 21 ~~~v~~~~~G~v-~~----------~v~~G~~V~kG~~L~~ld 52 (328)
T PF12700_consen 21 EVSVSAPVSGRV-SV----------NVKEGDKVKKGQVLAELD 52 (328)
T ss_dssp EEEE--SS-EEE-EE-----------S-TTSEEETT-EEEEEE
T ss_pred EEEEECCCCEEE-EE----------EeCCcCEECCCCEEEEEE
Confidence 367999999999 65 899999999999999998
No 73
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.33 E-value=0.0014 Score=62.31 Aligned_cols=68 Identities=24% Similarity=0.315 Sum_probs=55.9
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEec----CeeeeeecCCCeEEEEEecCCCCeecCCCeE
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQF----GTELPVKSDVAGEVLKLLFDDGDAVGFGDPL 276 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEam----K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL 276 (287)
...|+||..|.|+. +++.||.|++||+|+.|-.. ....+|+||.+|+|.-+. ..-.|..|++|
T Consensus 244 ~~~v~A~~~G~~~~-----------~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~~v~~G~~l 310 (316)
T cd06252 244 RCYVFAPHPGLFEP-----------LVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPGLVRRGDCL 310 (316)
T ss_pred cEEEEcCCCeEEEE-----------ecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCCccCCCCEE
Confidence 36899999999984 69999999999999998653 345789999999998654 33569999999
Q ss_pred EEEec
Q 023091 277 IAVLP 281 (287)
Q Consensus 277 ~~I~p 281 (287)
+.|-.
T Consensus 311 ~~i~~ 315 (316)
T cd06252 311 AVLAA 315 (316)
T ss_pred EEEec
Confidence 98753
No 74
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.25 E-value=0.00047 Score=48.88 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=31.7
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT 247 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~ 247 (287)
..|.+|..|.+... +|++||.|++||+|+.|+....
T Consensus 3 ~~I~~~~~G~V~~v----------~V~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 3 VTIQAPVSGRVESV----------YVKEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred EEEeCCCCEEEEEE----------EecCCCEEcCCCEEEEECcHHH
Confidence 46999999999875 8999999999999999986544
No 75
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.25 E-value=0.0016 Score=61.23 Aligned_cols=65 Identities=31% Similarity=0.387 Sum_probs=53.4
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEec--CeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQF--GTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEam--K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I 279 (287)
..|+||..|.|+. .++.||.|++||+|+.|... ....+|+||.+|+|.-+. ..-.|..|+.|+.|
T Consensus 220 ~~v~A~~~G~~~~-----------~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~v~~G~~l~~i 286 (287)
T cd06251 220 VWVRAPQGGLLRS-----------LVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPLVNEGDALFHI 286 (287)
T ss_pred eEEecCCCeEEEE-----------ecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCccCCCCEEEEe
Confidence 5799999999985 58999999999999999642 223689999999996554 55578899999876
No 76
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=97.21 E-value=0.0013 Score=61.63 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=29.2
Q ss_pred eeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091 250 PVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 250 eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
.|+||++|+|..+.+..|+.|.. ++|+.|.+..
T Consensus 206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~~~ 238 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGDTS 238 (327)
T ss_pred EEECCCCeEEEEEecCCCCccCC-CccEEEecCC
Confidence 58999999999999999999985 8999887643
No 77
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=97.17 E-value=0.0008 Score=50.48 Aligned_cols=35 Identities=26% Similarity=0.575 Sum_probs=31.9
Q ss_pred eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
+..|+||.+|+|.++++++||.|+.||+|+.++..
T Consensus 2 ~~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~ 36 (71)
T PRK05889 2 AEDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESM 36 (71)
T ss_pred CcEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEec
Confidence 44699999999999999999999999999998754
No 78
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=97.10 E-value=0.0025 Score=61.99 Aligned_cols=67 Identities=19% Similarity=0.355 Sum_probs=53.5
Q ss_pred CceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe-cC-eeee--eecCCCeEEEEEecCCCCeecCCCe
Q 023091 200 GYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ-FG-TELP--VKSDVAGEVLKLLFDDGDAVGFGDP 275 (287)
Q Consensus 200 ~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa-mK-~~~e--V~Ap~sG~Vveilv~dGd~Ve~Gqp 275 (287)
+...|+||..|.|+. +++.||.|++||.|+.|-. .. ...+ |+||.+|+|.-+. ..-.|..|++
T Consensus 288 ~~~~v~Ap~~Gl~~~-----------~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~--~~~~V~~G~~ 354 (359)
T cd06250 288 GVEMLYAPAGGMVVY-----------RAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARA--SRRFVRAGDE 354 (359)
T ss_pred CcEEEeCCCCeEEEE-----------ecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEec--CCccccCCCe
Confidence 346899999999985 6899999999999998853 21 1123 5999999997654 6678999999
Q ss_pred EEEE
Q 023091 276 LIAV 279 (287)
Q Consensus 276 L~~I 279 (287)
|+.|
T Consensus 355 l~~I 358 (359)
T cd06250 355 LAKI 358 (359)
T ss_pred EEEe
Confidence 9987
No 79
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=97.05 E-value=0.0033 Score=60.54 Aligned_cols=66 Identities=14% Similarity=0.178 Sum_probs=54.7
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEec----CeeeeeecCCCeEEEEEecCCCCeecCCCeE
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQF----GTELPVKSDVAGEVLKLLFDDGDAVGFGDPL 276 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEam----K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL 276 (287)
...|+||..|.|+. .++.||.|++||.|+.|-.. ....+|+||.+|+|.-+. ..-.|..|+.|
T Consensus 255 ~~~v~Ap~~Gi~~~-----------~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~V~~Gd~l 321 (325)
T TIGR02994 255 DCFIFAEDDGLIEF-----------MIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGLIKSGDCI 321 (325)
T ss_pred CeEEEcCCCeEEEE-----------ecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCccCCCCEE
Confidence 35799999999985 68999999999999988653 245789999999998754 45678889998
Q ss_pred EEE
Q 023091 277 IAV 279 (287)
Q Consensus 277 ~~I 279 (287)
+.|
T Consensus 322 ~~i 324 (325)
T TIGR02994 322 AVL 324 (325)
T ss_pred EEe
Confidence 876
No 80
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=97.05 E-value=0.0008 Score=54.76 Aligned_cols=40 Identities=30% Similarity=0.480 Sum_probs=35.5
Q ss_pred CCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe
Q 023091 223 QSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL 263 (287)
Q Consensus 223 ~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil 263 (287)
..+.|++||.|++||.|+..+. -+...|.|+++|+|+.|.
T Consensus 42 ~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~ 81 (101)
T PF13375_consen 42 AEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIE 81 (101)
T ss_pred ceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEe
Confidence 5689999999999999999875 556799999999999985
No 81
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.92 E-value=0.0036 Score=59.84 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=29.9
Q ss_pred eeecCCCeEEEEEec-CCCCeecCCCeEEEEecC
Q 023091 250 PVKSDVAGEVLKLLF-DDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 250 eV~Ap~sG~Vveilv-~dGd~Ve~GqpL~~I~p~ 282 (287)
.|+||++|+|..+.+ ..|+.|..|++|+.|.+.
T Consensus 273 ~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~~ 306 (423)
T TIGR01843 273 IIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVPE 306 (423)
T ss_pred EEECCCCcEEEEEEEEccCceecCCCeeEEEecC
Confidence 499999999999876 799999999999999864
No 82
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.91 E-value=0.0038 Score=58.60 Aligned_cols=65 Identities=28% Similarity=0.374 Sum_probs=51.3
Q ss_pred CceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe--cCeeeeeecCCCeEEEEEecCCCCeecCCCeEE
Q 023091 200 GYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ--FGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI 277 (287)
Q Consensus 200 ~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa--mK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~ 277 (287)
+...++||..|.|+. +++.||.|++||+|+.|-. .....+|+||.+|.|.-+.. .-.|..|++|+
T Consensus 222 ~~~~v~Ap~~G~~~~-----------~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~--~~~v~~G~~l~ 288 (288)
T cd06254 222 DVYYVTSPASGLWYP-----------FVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTA--TLPVRKGDPLA 288 (288)
T ss_pred CCEEEecCCCeEEEE-----------ecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC--CCccCCCCccC
Confidence 346899999999984 6899999999999998842 23457899999999987653 34667777663
No 83
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=96.79 E-value=0.0028 Score=47.10 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=32.3
Q ss_pred eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
|..|.||..|+|.+++++.|+.|+.||+|+.++..
T Consensus 1 ~~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~ 35 (70)
T PRK08225 1 MTKVYASMAGNVWKIVVKVGDTVEEGQDVVILESM 35 (70)
T ss_pred CCeEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 46799999999999999999999999999998854
No 84
>PRK06748 hypothetical protein; Validated
Probab=96.67 E-value=0.0041 Score=49.16 Aligned_cols=34 Identities=24% Similarity=0.084 Sum_probs=31.9
Q ss_pred eeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..-|+||..|+|.+++++.||.|+.||+|+.|+.
T Consensus 4 ~~~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 4 IEGVYSPCYGKVEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred eeEEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 3459999999999999999999999999999997
No 85
>PRK12784 hypothetical protein; Provisional
Probab=96.55 E-value=0.01 Score=46.70 Aligned_cols=71 Identities=11% Similarity=0.084 Sum_probs=63.7
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe-eeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT-ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~-~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
..|.||--|++-.. |+.+++.|-+.+.|..|+.|.. +..|.--++|.|.-+.|+.||.|..+..|+.++
T Consensus 6 e~iyS~~~G~Veki----------fi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~e 75 (84)
T PRK12784 6 EEICSSYEGKVEEI----------FVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLE 75 (84)
T ss_pred hhhcCccccEEEEE----------EEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEe
Confidence 35899999999875 9999999999999999998874 456888999999999999999999999999998
Q ss_pred cC
Q 023091 281 PS 282 (287)
Q Consensus 281 p~ 282 (287)
..
T Consensus 76 dD 77 (84)
T PRK12784 76 DD 77 (84)
T ss_pred ec
Confidence 53
No 86
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=96.45 E-value=0.0052 Score=43.77 Aligned_cols=33 Identities=33% Similarity=0.574 Sum_probs=30.3
Q ss_pred eeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 250 PVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 250 eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
.|+||++|+|.+++++.|+.|+.||+|+.++..
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 33 (67)
T cd06850 1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAM 33 (67)
T ss_pred CccCCccEEEEEEEeCCCCEECCCCEEEEEEcc
Confidence 378999999999999999999999999999753
No 87
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=95.97 E-value=0.012 Score=44.55 Aligned_cols=34 Identities=35% Similarity=0.615 Sum_probs=29.3
Q ss_pred eeeecCCCeEEEE------EecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLK------LLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vve------ilv~dGd~Ve~GqpL~~I~p~ 282 (287)
++|++|..|...+ +++++|+.|+.||+|+.|+..
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~ 40 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETM 40 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESS
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcC
Confidence 3688888887665 999999999999999999864
No 88
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.96 E-value=0.014 Score=49.70 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=31.5
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|+||.+|+|.++++++||.|+.||+|+.++..
T Consensus 62 ~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEam 95 (130)
T PRK06549 62 DAMPSPMPGTILKVLVAVGDQVTENQPLLILEAM 95 (130)
T ss_pred cEEECCCCEEEEEEEeCCCCEECCCCEEEEEecc
Confidence 5689999999999999999999999999999854
No 89
>PF13437 HlyD_3: HlyD family secretion protein
Probab=95.93 E-value=0.014 Score=45.73 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=30.7
Q ss_pred eeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 250 PVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 250 eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
.|+||++|+|..+.++.|+.|..|++|+.|.+.
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 489999999999999999999999999999865
No 90
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=95.89 E-value=0.012 Score=50.18 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=31.6
Q ss_pred eeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
...|+||..|++.+++|+.||.|..||.|+.|+.
T Consensus 70 ~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEA 103 (140)
T COG0511 70 GTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEA 103 (140)
T ss_pred CceEecCcceEEEEEeeccCCEEcCCCEEEEEEe
Confidence 3679999999999999999999999999999984
No 91
>COG3608 Predicted deacylase [General function prediction only]
Probab=95.77 E-value=0.031 Score=54.41 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=50.6
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEec---CeeeeeecCCCeEEEEEecCCCCeecCCCeEEE
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQF---GTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIA 278 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEam---K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~ 278 (287)
..|+||..|.|.- .|+.||.|++||+|+.|-.+ +...||+|+++|+|..+. .--.|+.|+.|+.
T Consensus 257 ~~i~Ap~~G~v~~-----------~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r--~~~~v~~Gdl~~~ 323 (331)
T COG3608 257 EMIRAPAGGLVEF-----------LVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR--SLRLVQPGDLLKV 323 (331)
T ss_pred ceeecCCCceEEE-----------eecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe--eccccCCCCeeee
Confidence 3578888887753 69999999999999999876 566799999999998775 2234555655555
Q ss_pred Ee
Q 023091 279 VL 280 (287)
Q Consensus 279 I~ 280 (287)
+.
T Consensus 324 v~ 325 (331)
T COG3608 324 VG 325 (331)
T ss_pred ec
Confidence 43
No 92
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.76 E-value=0.041 Score=51.95 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=42.5
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC--eeeeeecCCCeEEEEE
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG--TELPVKSDVAGEVLKL 262 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK--~~~eV~Ap~sG~Vvei 262 (287)
...|+||..|.|+. .++.||.|++||.|+.|-..= ...+++||.+|+|.-+
T Consensus 231 ~~~v~Ap~~Gi~~~-----------~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 231 RDWVAAIHGGLFEP-----------SVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred eEEEecCCCeEEEE-----------ecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 46899999999985 589999999999999885321 2357999999999876
No 93
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=95.73 E-value=0.044 Score=48.60 Aligned_cols=65 Identities=25% Similarity=0.373 Sum_probs=50.4
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcC----CCEEEEEEecCeeeeeecCCCeEEE-----------------
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKE----GQTIGYLDQFGTELPVKSDVAGEVL----------------- 260 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~----GqvL~iIEamK~~~eV~Ap~sG~Vv----------------- 260 (287)
..|.||+.|++.. +-++-|.|=. |+-+++.=. ...|.||++|+|.
T Consensus 21 ~~i~aP~~G~vi~-----------L~~V~D~vFs~k~mGdGvAI~P~---~~~v~AP~dG~V~~vf~T~HAigi~t~~G~ 86 (169)
T PRK09439 21 IEIIAPLSGEIVN-----------IEDVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGV 86 (169)
T ss_pred eEEEecCCeEEEE-----------hHHCCChHhcccCccceEEEEcc---CCEEEecCCeEEEEEcCCCCEEEEEeCCCc
Confidence 5689999999885 3455555544 777776543 3679999999887
Q ss_pred ------------------EEecCCCCeecCCCeEEEEe
Q 023091 261 ------------------KLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 261 ------------------eilv~dGd~Ve~GqpL~~I~ 280 (287)
+.+++.||.|..||+|+++.
T Consensus 87 eiLIHiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 87 ELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred EEEEEEeecccccCCCceEEEecCCCEEeCCCEEEEEc
Confidence 55688999999999999986
No 94
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=95.65 E-value=0.02 Score=54.51 Aligned_cols=41 Identities=32% Similarity=0.513 Sum_probs=36.0
Q ss_pred EEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 240 GYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 240 ~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
++|++. ...|.++++|+|.++++++||.|..||+|++|.+.
T Consensus 42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPR 82 (346)
T ss_pred eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcH
Confidence 556653 57899999999999999999999999999999864
No 95
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.51 E-value=0.022 Score=49.61 Aligned_cols=34 Identities=24% Similarity=0.466 Sum_probs=31.4
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|+||..|+|.++++++||.|+.||+|+.++..
T Consensus 85 ~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEam 118 (153)
T PRK05641 85 NVVTAPMPGKILRILVREGQQVKVGQGLLILEAM 118 (153)
T ss_pred CEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeec
Confidence 5689999999999999999999999999998754
No 96
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=95.24 E-value=0.025 Score=52.98 Aligned_cols=35 Identities=40% Similarity=0.602 Sum_probs=32.5
Q ss_pred eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
...|.++.+|+|.++++++||.|..||+|++|.+.
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~ 76 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPT 76 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECch
Confidence 46799999999999999999999999999999864
No 97
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=95.21 E-value=0.03 Score=56.40 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=34.5
Q ss_pred CCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEec
Q 023091 224 SPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLF 264 (287)
Q Consensus 224 ~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv 264 (287)
.+.|++||+|++||.|+.-+.. ....+.||++|+|++|..
T Consensus 42 k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 42 KMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred ceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 4689999999999999986543 568899999999999954
No 98
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=95.21 E-value=0.022 Score=50.42 Aligned_cols=56 Identities=21% Similarity=0.254 Sum_probs=47.4
Q ss_pred cCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCeec----CCCeEEEEecCC
Q 023091 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAVG----FGDPLIAVLPSF 283 (287)
Q Consensus 228 ~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~Ve----~GqpL~~I~p~~ 283 (287)
++|..|.+|+-+|-+|.-|...+|.+|++|+|++|+ .++-..|+ -+-+|++++.+.
T Consensus 89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~EnPGlvN~Sp~e~GWl~k~kls~ 151 (172)
T KOG3373|consen 89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEENPGLVNESPEEDGWLIKMKLSS 151 (172)
T ss_pred CCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccccCCCcccCCcccCceEEEEEeCC
Confidence 789999999999999999999999999999999997 44555555 355899888653
No 99
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.10 E-value=0.038 Score=52.88 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=37.4
Q ss_pred EEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 240 GYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 240 ~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
|.|...+....|.++.+|+|.+++|++||.|..|++|+.+...
T Consensus 35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~ 77 (423)
T TIGR01843 35 GKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDAT 77 (423)
T ss_pred eEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccc
Confidence 4555666667789999999999999999999999999999764
No 100
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=95.08 E-value=0.078 Score=48.99 Aligned_cols=66 Identities=24% Similarity=0.305 Sum_probs=53.3
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEE--EEEEecC--eeeeeecCCCeEEEEEecCCCCeecCCCeEE
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTI--GYLDQFG--TELPVKSDVAGEVLKLLFDDGDAVGFGDPLI 277 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL--~iIEamK--~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~ 277 (287)
..+.||..|.|+. .++.||.|++||+| +.+-..- ...+|+||.+|+|.-+ ...-.|..|+.|+
T Consensus 221 ~~~~a~~~G~~~~-----------~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~~--~~~~~v~~G~~l~ 287 (292)
T PF04952_consen 221 EWVRAPAGGLFEP-----------EVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIFI--RESPYVEQGDALA 287 (292)
T ss_dssp CEEESSSSEEEEE-----------TSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEESE--CTSSECTTTEEEE
T ss_pred eeecCCccEEEEE-----------eecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEEe--CcccccCCCCeEE
Confidence 5799999999985 58999999999999 6554222 3358999999999654 4777899999999
Q ss_pred EEe
Q 023091 278 AVL 280 (287)
Q Consensus 278 ~I~ 280 (287)
.|.
T Consensus 288 ~v~ 290 (292)
T PF04952_consen 288 KVA 290 (292)
T ss_dssp EEE
T ss_pred EEe
Confidence 875
No 101
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=94.95 E-value=0.099 Score=44.56 Aligned_cols=65 Identities=25% Similarity=0.348 Sum_probs=45.8
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEE----cCCCEEEEEEecCeeeeeecCCCeEEE-----------------
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVI----KEGQTIGYLDQFGTELPVKSDVAGEVL----------------- 260 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~V----k~GqvL~iIEamK~~~eV~Ap~sG~Vv----------------- 260 (287)
..|.||+.|++..- -++-|.+ --|+-+++.=.. ..|.||++|+|.
T Consensus 3 ~~i~aPv~G~vi~l-----------~~v~D~vFs~~~lG~GvaI~p~~---~~v~AP~~G~v~~i~~T~HAi~i~s~~G~ 68 (132)
T PF00358_consen 3 ITIYAPVSGKVIPL-----------EEVPDPVFSQKMLGDGVAIIPSD---GKVYAPVDGTVTMIFPTKHAIGIRSDNGV 68 (132)
T ss_dssp EEEE-SSSEEEEEG-----------GGSSSHHHHTTSSSEEEEEEESS---SEEEESSSEEEEEE-TTSSEEEEEETTSE
T ss_pred eEEEeeCCcEEEEh-----------hhCCchHHCCCCCcCEEEEEcCC---CeEEEEeeEEEEEEcCCCCEEEEEeCCCC
Confidence 47999999999864 2344444 237778876433 478999999888
Q ss_pred ------------------EEecCCCCeecCCCeEEEEe
Q 023091 261 ------------------KLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 261 ------------------eilv~dGd~Ve~GqpL~~I~ 280 (287)
+.+++.||.|..||+|+.+.
T Consensus 69 eiLiHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~D 106 (132)
T PF00358_consen 69 EILIHIGIDTVKLNGEGFETLVKEGDKVKAGQPLIEFD 106 (132)
T ss_dssp EEEEE-SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE-
T ss_pred EEEEEEccchhhcCCcceEEEEeCCCEEECCCEEEEEc
Confidence 55678999999999999875
No 102
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=94.84 E-value=0.039 Score=53.99 Aligned_cols=35 Identities=34% Similarity=0.517 Sum_probs=32.8
Q ss_pred eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
...|.++++|.|.+++|++||.|..||+|++|.+.
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~ 95 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPT 95 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcH
Confidence 57899999999999999999999999999999864
No 103
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.83 E-value=0.053 Score=53.91 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=35.2
Q ss_pred EEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 241 YLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 241 iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
.|....-...|.+...|+|.+|+|++||.|..||+|+++.+.
T Consensus 52 ~v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~ 93 (457)
T TIGR01000 52 TIEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNG 93 (457)
T ss_pred EEEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECch
Confidence 344343446799999999999999999999999999999864
No 104
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=94.83 E-value=0.046 Score=52.86 Aligned_cols=44 Identities=30% Similarity=0.476 Sum_probs=37.6
Q ss_pred EEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 238 TIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 238 vL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..+.|++.. ...|.++++|+|.++.++.||.|..||+|++|.+.
T Consensus 54 ~~G~v~~~~-~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 54 LPGRLDAYR-QAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEEEEEEee-EEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence 346666654 36899999999999999999999999999999764
No 105
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=94.81 E-value=0.099 Score=44.15 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=17.6
Q ss_pred EEecCCCCeecCCCeEEEEe
Q 023091 261 KLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 261 eilv~dGd~Ve~GqpL~~I~ 280 (287)
+++++.||.|..||+|+++.
T Consensus 83 ~~~vk~Gd~V~~G~~l~~~D 102 (124)
T cd00210 83 TSHVEEGQRVKQGDKLLEFD 102 (124)
T ss_pred EEEecCCCEEcCCCEEEEEc
Confidence 55688999999999999986
No 106
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=94.80 E-value=0.042 Score=54.15 Aligned_cols=44 Identities=30% Similarity=0.533 Sum_probs=37.9
Q ss_pred EEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 238 TIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 238 vL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..+.|++.. ...|.++++|.|.++++++|+.|..||+|++|.+.
T Consensus 78 ~~Gtv~a~~-~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~ 121 (415)
T PRK11556 78 GLGTVTAAN-TVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPR 121 (415)
T ss_pred EEEEEEeee-EEEEEccccEEEEEEECCCCCEecCCCEEEEECcH
Confidence 456777754 37799999999999999999999999999999763
No 107
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=94.77 E-value=0.062 Score=49.35 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=34.2
Q ss_pred EEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 240 GYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 240 ~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
+.|+..+ ...|.++.+|+|.++++++|+.|..||+|+.+..
T Consensus 19 G~v~~~~-~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~ 59 (322)
T TIGR01730 19 GSLEAVD-EADLAAEVAGKITKISVREGQKVKKGQVLARLDD 59 (322)
T ss_pred EEEEEee-EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECC
Confidence 3444433 3579999999999999999999999999999974
No 108
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=94.74 E-value=0.05 Score=52.70 Aligned_cols=45 Identities=27% Similarity=0.433 Sum_probs=38.4
Q ss_pred CEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 237 QTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 237 qvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
+..+.|++.. ...|.++++|.|.++.++.|+.|..||+|++|.+.
T Consensus 51 ~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 51 ELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred EEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence 3456676665 46799999999999999999999999999999864
No 109
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=94.68 E-value=0.1 Score=43.94 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.9
Q ss_pred EEecCCCCeecCCCeEEEEe
Q 023091 261 KLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 261 eilv~dGd~Ve~GqpL~~I~ 280 (287)
+.+++.||.|..||+|+++.
T Consensus 83 ~~~v~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 83 TSHVEEGQRVKKGDPLLEFD 102 (121)
T ss_pred EEEecCCCEEcCCCEEEEEc
Confidence 66789999999999999986
No 110
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=94.60 E-value=0.053 Score=54.59 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=34.0
Q ss_pred CCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEec
Q 023091 224 SPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLF 264 (287)
Q Consensus 224 ~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv 264 (287)
.+.|++||+|++||.|+.-+.. ....+.||++|+|++|..
T Consensus 43 ~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 43 KMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR 82 (448)
T ss_pred ceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence 4799999999999999965543 458899999999999953
No 111
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=94.60 E-value=0.076 Score=50.17 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=32.3
Q ss_pred eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
...|.++++|+|.++++++||.|+.||+|++|.+.
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~ 77 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAA 77 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 46899999999999999999999999999999753
No 112
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=94.59 E-value=0.06 Score=51.74 Aligned_cols=43 Identities=28% Similarity=0.349 Sum_probs=36.3
Q ss_pred EEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 238 TIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 238 vL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
.-|.|++... ..|.++++|.|.++.+++||.|..||+|+.|.+
T Consensus 52 ~~G~v~~~~~-~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 52 ATGKLDALRK-VDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEEEEeeeE-EEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 3455555543 579999999999999999999999999999975
No 113
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=94.48 E-value=0.07 Score=52.32 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=32.2
Q ss_pred eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
...|.++.+|+|.+++|++|+.|..||+|++|.+.
T Consensus 58 ~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~ 92 (421)
T TIGR03794 58 VDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQP 92 (421)
T ss_pred eeEEECCCCeEEEEEECCCcCEECCCCEEEEECcH
Confidence 35799999999999999999999999999999864
No 114
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=94.45 E-value=0.061 Score=52.45 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=36.2
Q ss_pred EEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 240 GYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 240 ~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
+.|++.. ...|.+.++|.|.++.++.||.|..||+|++|.+.
T Consensus 58 G~v~a~~-~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~ 99 (397)
T PRK15030 58 GRTSAYR-IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 99 (397)
T ss_pred EEEEEEE-EEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCH
Confidence 4556544 37899999999999999999999999999999864
No 115
>PRK07051 hypothetical protein; Validated
Probab=94.41 E-value=0.067 Score=41.10 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=32.6
Q ss_pred eeeeeecCCCeEEEE-------EecCCCCeecCCCeEEEEecC
Q 023091 247 TELPVKSDVAGEVLK-------LLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 247 ~~~eV~Ap~sG~Vve-------ilv~dGd~Ve~GqpL~~I~p~ 282 (287)
++.+|+||..|++.+ +++++|+.|..|++|+.++..
T Consensus 2 ~~~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~ 44 (80)
T PRK07051 2 AQHEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVM 44 (80)
T ss_pred CccEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEc
Confidence 356899999999999 999999999999999998864
No 116
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=94.39 E-value=0.15 Score=44.79 Aligned_cols=69 Identities=28% Similarity=0.374 Sum_probs=46.5
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEE---------------------
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVL--------------------- 260 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vv--------------------- 260 (287)
..|.||+.|.+..-... ..+.| ..| --||-+++.= ....|.||++|+|.
T Consensus 6 ~~i~sP~~G~vv~Ls~V---pD~vF-s~k---~mGdGiAI~P---~~g~vvAPvdG~v~~iFpTkHAigi~t~~GvEiLi 75 (156)
T COG2190 6 EEIYSPLSGEVVPLSDV---PDPVF-SEK---MVGDGVAIKP---SEGEVVAPVDGTVVLIFPTKHAIGIETDEGVEILI 75 (156)
T ss_pred EEEEccCCceEEEchhC---CchHh-hcc---cccCcEEEec---CCCeEEeccCcEEEEEeeCCcEEEEEcCCCcEEEE
Confidence 57999999998764211 01111 111 1266666543 33678888888776
Q ss_pred --------------EEecCCCCeecCCCeEEEEe
Q 023091 261 --------------KLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 261 --------------eilv~dGd~Ve~GqpL~~I~ 280 (287)
+.++++||.|..||+|+++.
T Consensus 76 HiGiDTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 76 HIGIDTVKLNGEGFESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred EeceeeEEECCcceEEEeeCCCEEccCCEEEEEC
Confidence 56689999999999999875
No 117
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=94.36 E-value=0.053 Score=53.14 Aligned_cols=34 Identities=29% Similarity=0.509 Sum_probs=31.5
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|.+.++|.|++++|+|++.|..||+||+|.+.
T Consensus 54 v~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~ 87 (352)
T COG1566 54 VPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPR 87 (352)
T ss_pred EEEcCcCceEEEEEEecCCCEecCCCeEEEECcH
Confidence 4678899999999999999999999999999874
No 118
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=94.31 E-value=0.051 Score=54.14 Aligned_cols=40 Identities=30% Similarity=0.440 Sum_probs=34.5
Q ss_pred CCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe
Q 023091 223 QSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL 263 (287)
Q Consensus 223 ~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil 263 (287)
..+.|++||+|+.||.|+..+ ......|.|+++|+|++|.
T Consensus 43 ~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 43 AEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 357999999999999999984 3356899999999999985
No 119
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=93.85 E-value=0.14 Score=57.15 Aligned_cols=72 Identities=24% Similarity=0.247 Sum_probs=55.2
Q ss_pred CceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091 200 GYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279 (287)
Q Consensus 200 ~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I 279 (287)
+..+|...+.|..+.. .|+.|+.+..++.....+... ...|.||..|+|.+++++.||.|..||+|+.|
T Consensus 1037 g~r~v~fElNGq~reV----------~V~D~s~~~~~~~~~KAd~~~-~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~i 1105 (1143)
T TIGR01235 1037 GEREVFFELNGQPRRI----------KVPDRSHKAEAAVRRKADPGN-PAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVL 1105 (1143)
T ss_pred CcEEEEEEECCeEEEE----------EecCccccccccccccccccc-CceeecCCCcEEEEEEeCCCCEeCCCCEEEEE
Confidence 3467778888887654 567777776666655443322 25699999999999999999999999999999
Q ss_pred ecC
Q 023091 280 LPS 282 (287)
Q Consensus 280 ~p~ 282 (287)
+..
T Consensus 1106 Eam 1108 (1143)
T TIGR01235 1106 EAM 1108 (1143)
T ss_pred Eec
Confidence 853
No 120
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=93.80 E-value=0.083 Score=50.13 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=31.7
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|.++++|.|.++++++||.|..||+|+++.+.
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~ 81 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQP 81 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcH
Confidence 5699999999999999999999999999999863
No 121
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=93.75 E-value=0.1 Score=49.19 Aligned_cols=41 Identities=27% Similarity=0.290 Sum_probs=32.1
Q ss_pred CcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCC
Q 023091 225 PICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDD 266 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~d 266 (287)
..|++||+|++||+|++=... --.-..||++|+|.+|...+
T Consensus 43 m~VkeGD~Vk~Gq~LF~dK~~-p~v~ftsPvsG~V~~I~RG~ 83 (257)
T PF05896_consen 43 MLVKEGDRVKAGQPLFEDKKN-PGVKFTSPVSGTVKAINRGE 83 (257)
T ss_pred EEeccCCEEeCCCeeEeeCCC-CCcEEecCCCeEEEEEecCC
Confidence 589999999999999973211 22458999999999997633
No 122
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=93.70 E-value=0.11 Score=45.42 Aligned_cols=39 Identities=33% Similarity=0.627 Sum_probs=29.7
Q ss_pred CcccCCCEEcCCCEEEEEEecCeee-eeecCCCeEEEEEe
Q 023091 225 PICKEGDVIKEGQTIGYLDQFGTEL-PVKSDVAGEVLKLL 263 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEamK~~~-eV~Ap~sG~Vveil 263 (287)
+.+.+||.|++||.|+.|.+.|... -++||++|+|+-+.
T Consensus 94 ~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 94 PIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp ESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred EEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 4789999999999999999999764 69999999998776
No 123
>PF13437 HlyD_3: HlyD family secretion protein
Probab=93.63 E-value=0.11 Score=40.63 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=29.5
Q ss_pred EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC
Q 023091 203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG 246 (287)
Q Consensus 203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK 246 (287)
+|+||..|.+... +++.|+.|.+|+.|+.|..+.
T Consensus 1 ~i~AP~~G~V~~~----------~~~~G~~v~~g~~l~~i~~~~ 34 (105)
T PF13437_consen 1 TIRAPFDGVVVSI----------NVQPGEVVSAGQPLAEIVDTD 34 (105)
T ss_pred CEECCCCEEEEEE----------eCCCCCEECCCCEEEEEEccc
Confidence 3899999999875 579999999999999998654
No 124
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=93.36 E-value=0.1 Score=55.34 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=33.6
Q ss_pred CCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe
Q 023091 223 QSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL 263 (287)
Q Consensus 223 ~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil 263 (287)
..+.|++||+|.+||.|+.-+. -+...|.||++|+|+.|.
T Consensus 49 ~~~~V~~GD~V~~GQ~i~~~~~-~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 49 GELCVKVGDRVLKGQPLTQGDG-RMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CcceeCcCCEEcCCCEeeecCC-CceeEEeCCCCeEEeeec
Confidence 3579999999999999996532 245899999999999985
No 125
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=93.34 E-value=0.14 Score=46.12 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=30.9
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|+||++|+|..+.+..|+.|..|++|+.|.+.
T Consensus 89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~ 122 (265)
T TIGR00999 89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVADL 122 (265)
T ss_pred EEEECCCCeEEEEEEcCCCCEeCCCCceEEEEcC
Confidence 3689999999999999999999999999998754
No 126
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=93.31 E-value=0.068 Score=54.78 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=35.4
Q ss_pred CCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe
Q 023091 223 QSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL 263 (287)
Q Consensus 223 ~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil 263 (287)
..++|++||.|.+||.|..=+. .+.++.||++|+|.+|.
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 4578999999999999998665 88999999999999998
No 127
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=92.40 E-value=0.25 Score=48.66 Aligned_cols=44 Identities=23% Similarity=0.208 Sum_probs=36.5
Q ss_pred EEEEEEecC-eeeeeecCCCeEEEEEe-cCCCCeecCCCeEEEEec
Q 023091 238 TIGYLDQFG-TELPVKSDVAGEVLKLL-FDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 238 vL~iIEamK-~~~eV~Ap~sG~Vveil-v~dGd~Ve~GqpL~~I~p 281 (287)
..+.|+... -...|.+.++|.|.+++ +..||.|..||+|++|..
T Consensus 112 ~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~s 157 (409)
T PRK09783 112 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTI 157 (409)
T ss_pred EeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeC
Confidence 456666443 23579999999999998 999999999999999974
No 128
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=91.84 E-value=0.16 Score=46.31 Aligned_cols=33 Identities=33% Similarity=0.432 Sum_probs=22.5
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa 244 (287)
..|.++..|.+... +|++||.|++||+|+.|+.
T Consensus 2 ~~Vq~~~~G~V~~i----------~V~eG~~VkkGq~L~~LD~ 34 (305)
T PF00529_consen 2 KIVQSLVGGIVTEI----------LVKEGQRVKKGQVLARLDP 34 (305)
T ss_dssp EEE--SS-EEEEEE-----------S-TTEEE-TTSECEEE--
T ss_pred EEEeCCCCeEEEEE----------EccCcCEEeCCCEEEEEEe
Confidence 36889999999875 8999999999999999984
No 129
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=91.75 E-value=0.39 Score=43.55 Aligned_cols=44 Identities=30% Similarity=0.433 Sum_probs=36.0
Q ss_pred CEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 237 QTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 237 qvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
...+.+++ .....|.+...|.|.++++++||.|..||+|+.+.+
T Consensus 56 ~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 56 RAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 34455555 333478888999999999999999999999999986
No 130
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=91.59 E-value=0.25 Score=48.41 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=30.8
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|+||++|+|..+.+..|+.|..|++|+.|.+.
T Consensus 254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~ 287 (421)
T TIGR03794 254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLEVE 287 (421)
T ss_pred CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEEcc
Confidence 5699999999999999999999999999999653
No 131
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=91.32 E-value=0.27 Score=51.33 Aligned_cols=34 Identities=15% Similarity=0.361 Sum_probs=31.6
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
.+|.||..|+|.+++++.||.|+.||+|+.|+..
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEam 559 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAM 559 (596)
T ss_pred CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEec
Confidence 4699999999999999999999999999999853
No 132
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=91.20 E-value=0.64 Score=49.11 Aligned_cols=67 Identities=22% Similarity=0.255 Sum_probs=49.0
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcC----CCEEEEEEecCeeeeeecCCCeEEE----------------
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKE----GQTIGYLDQFGTELPVKSDVAGEVL---------------- 260 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~----GqvL~iIEamK~~~eV~Ap~sG~Vv---------------- 260 (287)
...|.||+.|++..- -++-|.|=. |+-+++.=.. ..|.||++|+|.
T Consensus 498 ~~~v~aP~~G~vi~l-----------~~v~D~vFs~~~~G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G 563 (648)
T PRK10255 498 IAELVSPITGDVVAL-----------DQVPDEAFASKAVGDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKG 563 (648)
T ss_pred ceEEEecCCcEEEEc-----------ccCcchhhhcccccCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCC
Confidence 356999999999863 334443332 6666665433 578999999887
Q ss_pred -------------------EEecCCCCeecCCCeEEEEec
Q 023091 261 -------------------KLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 261 -------------------eilv~dGd~Ve~GqpL~~I~p 281 (287)
+.+|++||.|..||+|+++..
T Consensus 564 ~eiLIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D~ 603 (648)
T PRK10255 564 AEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDL 603 (648)
T ss_pred CEEEEEeccchhccCCCCceEEecCCCEEcCCCEEEEEcH
Confidence 455889999999999999863
No 133
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=91.18 E-value=0.45 Score=49.99 Aligned_cols=64 Identities=31% Similarity=0.334 Sum_probs=49.9
Q ss_pred EEeCCcceEEEeccccCCCCCCCcccCCCEEcC----CCEEEEEEecCeeeeeecCCCeEEE------------------
Q 023091 203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKE----GQTIGYLDQFGTELPVKSDVAGEVL------------------ 260 (287)
Q Consensus 203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~----GqvL~iIEamK~~~eV~Ap~sG~Vv------------------ 260 (287)
.|.||+.|++.. .-++-|.|=. ||-+++.=. ...|.||++|+|.
T Consensus 480 ~i~aP~~G~v~~-----------L~~v~D~vFs~~~mG~G~AI~P~---~~~v~AP~~G~v~~vf~T~HAigi~t~~G~e 545 (627)
T PRK09824 480 GICSPMTGEVVP-----------LEQVADTTFASGLLGKGIAILPS---VGEVRSPVAGRVASLFATLHAIGLESDDGVE 545 (627)
T ss_pred hcccccceEEee-----------HHHCCCccccccccCCceEecCC---CCeEEccCCeEEEEEcCCCcEEEEEeCCCcE
Confidence 589999999885 4566666655 676776433 3589999999887
Q ss_pred -----------------EEecCCCCeecCCCeEEEEe
Q 023091 261 -----------------KLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 261 -----------------eilv~dGd~Ve~GqpL~~I~ 280 (287)
+.++++||.|..||+|+++.
T Consensus 546 iLiHiGiDTV~L~G~gF~~~v~~Gd~V~~G~~l~~~D 582 (627)
T PRK09824 546 VLIHVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFD 582 (627)
T ss_pred EEEEechhhhhcCCCCceEEecCCCEEcCCCEEEEEc
Confidence 56688999999999999986
No 134
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=90.94 E-value=0.62 Score=48.67 Aligned_cols=65 Identities=28% Similarity=0.341 Sum_probs=49.2
Q ss_pred EEeCCcceEEEeccccCCCCCCCcccCCCEEcC----CCEEEEEEecCeeeeeecCCCeEEE------------------
Q 023091 203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKE----GQTIGYLDQFGTELPVKSDVAGEVL------------------ 260 (287)
Q Consensus 203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~----GqvL~iIEamK~~~eV~Ap~sG~Vv------------------ 260 (287)
.|.||..|++..- -++-|.|=. ||-+++.= ....|.||++|+|.
T Consensus 464 ~i~aP~~G~~~~l-----------~~v~D~vFs~~~~G~G~ai~P---~~~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~e 529 (610)
T TIGR01995 464 SLYAPVAGEMLPL-----------NEVPDEVFSSGAMGKGIAILP---TEGEVVAPVDGTVTAVFPTKHAIGIRSDNGIE 529 (610)
T ss_pred eeccccceEEeeH-----------hhCCCccccccCcCCceEeeC---CCCEEECCCCeEEEEEcCCCCEEEEEECCCcE
Confidence 5899999998853 455555544 66666643 23678999999877
Q ss_pred -----------------EEecCCCCeecCCCeEEEEec
Q 023091 261 -----------------KLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 261 -----------------eilv~dGd~Ve~GqpL~~I~p 281 (287)
+.++++||.|..||+|+++..
T Consensus 530 iliHiGidTv~l~g~gF~~~v~~g~~V~~G~~l~~~d~ 567 (610)
T TIGR01995 530 ILIHVGIDTVELNGEGFEILVKVGDHVKAGQLLLTFDL 567 (610)
T ss_pred EEEEeccchhccCCCCeEEEecCcCEEcCCCEEEEecH
Confidence 566889999999999999863
No 135
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=90.86 E-value=0.6 Score=41.58 Aligned_cols=49 Identities=22% Similarity=0.340 Sum_probs=39.7
Q ss_pred cccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEE
Q 023091 226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIA 278 (287)
Q Consensus 226 ~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~ 278 (287)
++++|+.+++||.++.++-. ....+.-|.+ .++.++.|+.|..||.|+-
T Consensus 135 ~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli~ 183 (189)
T TIGR00164 135 YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVLA 183 (189)
T ss_pred ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEEE
Confidence 57899999999999999854 4455666765 3788999999999996653
No 136
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=90.36 E-value=0.39 Score=50.07 Aligned_cols=35 Identities=29% Similarity=0.542 Sum_probs=32.0
Q ss_pred eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
-..|.||..|+|.++++++||.|+.||+|+.|+..
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEam 558 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAM 558 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 34799999999999999999999999999998753
No 137
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=90.14 E-value=0.4 Score=49.88 Aligned_cols=34 Identities=26% Similarity=0.521 Sum_probs=31.8
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|.||..|+|.++++++||.|+.||+|+.|+..
T Consensus 518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEam 551 (582)
T TIGR01108 518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAM 551 (582)
T ss_pred CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEec
Confidence 5799999999999999999999999999999853
No 138
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=90.08 E-value=0.72 Score=41.62 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=39.0
Q ss_pred cccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEE
Q 023091 226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI 277 (287)
Q Consensus 226 ~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~ 277 (287)
++++|+.+++||.++.++-. ....+.-|.+ .++.++.||.|..||.++
T Consensus 155 ~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi 202 (206)
T PRK05305 155 YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVL 202 (206)
T ss_pred eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEE
Confidence 67899999999999999855 4456666665 378999999999999543
No 139
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=89.38 E-value=0.49 Score=45.05 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=29.4
Q ss_pred eecCCCeEEEE-------EecCCCCeecCCCeEEEEecC
Q 023091 251 VKSDVAGEVLK-------LLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 251 V~Ap~sG~Vve-------ilv~dGd~Ve~GqpL~~I~p~ 282 (287)
|.||..|++.+ ++++.||.|+.||+|+.|+..
T Consensus 200 V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAM 238 (274)
T PLN02983 200 LKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAM 238 (274)
T ss_pred EeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEee
Confidence 78999999999 599999999999999999854
No 140
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=89.37 E-value=0.51 Score=49.19 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=31.7
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|.||..|+|.++++++|+.|+.||+|+.|+..
T Consensus 523 ~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieam 556 (592)
T PRK09282 523 GAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAM 556 (592)
T ss_pred ceEeCCCcEEEEEEEeCCCCEECCCCEEEEEecc
Confidence 5799999999999999999999999999998753
No 141
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=88.83 E-value=0.59 Score=46.43 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=33.1
Q ss_pred CcccCCCEEcCCCEEEEEEecCe--eeeeecCCCeEEEEEecCCCC
Q 023091 225 PICKEGDVIKEGQTIGYLDQFGT--ELPVKSDVAGEVLKLLFDDGD 268 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEamK~--~~eV~Ap~sG~Vveilv~dGd 268 (287)
..|++||.|++||+|+. +|- -.-++||++|+|++|...+-.
T Consensus 43 mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~KR 85 (447)
T COG1726 43 MKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGEKR 85 (447)
T ss_pred ceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeecccce
Confidence 57999999999999986 343 245899999999999865543
No 142
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=88.75 E-value=0.65 Score=40.39 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=29.8
Q ss_pred eeeecCCCeEEEE-------EecCCCCeecCCCeEEEEec
Q 023091 249 LPVKSDVAGEVLK-------LLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 249 ~eV~Ap~sG~Vve-------ilv~dGd~Ve~GqpL~~I~p 281 (287)
..|+||..|++.+ ++++.||.|+.||.|+.|+.
T Consensus 81 ~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEa 120 (156)
T TIGR00531 81 HFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEA 120 (156)
T ss_pred CEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEe
Confidence 4589999999987 58999999999999999875
No 143
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=88.71 E-value=0.7 Score=42.91 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=31.8
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG 246 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK 246 (287)
...|+||..|++... .+++||.|..||+|+.|+...
T Consensus 45 ~~~~~a~~~g~~~~~----------~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 45 TNEVEAPAAGTLRRQ----------VAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred eEEEecCCCeEEEEE----------EcCCCCEeCCCCEEEEEecCC
Confidence 367999999999875 799999999999999998654
No 144
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=87.78 E-value=0.75 Score=35.45 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=21.8
Q ss_pred eCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC
Q 023091 205 FSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG 246 (287)
Q Consensus 205 ~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK 246 (287)
--|.+|... +++.||.|++||+||.|-+..
T Consensus 28 ID~~vGi~l------------~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 28 IDPAVGIEL------------HKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp --TT-EEEE------------SS-TTSEEBTTSEEEEEEESS
T ss_pred cCcCcCeEe------------cCcCcCEECCCCeEEEEEcCC
Confidence 446788765 589999999999999987654
No 145
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=87.71 E-value=1.1 Score=30.94 Aligned_cols=31 Identities=32% Similarity=0.481 Sum_probs=27.6
Q ss_pred ecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 252 KSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 252 ~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
.++.+|.|.++.+.+|+.|.+|++|+.++..
T Consensus 10 ~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~ 40 (74)
T cd06849 10 ESMTEGTIVEWLVKEGDSVEEGDVLAEVETD 40 (74)
T ss_pred CCCcEEEEEEEEECCCCEEcCCCEEEEEEeC
Confidence 3678999999999999999999999998653
No 146
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=87.56 E-value=0.68 Score=48.31 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=30.2
Q ss_pred eeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 250 PVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 250 eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
.+.||..|+|+.++|++|+.|..||+|+.++.
T Consensus 577 ~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEA 608 (645)
T COG4770 577 ELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEA 608 (645)
T ss_pred ceecCCCceEEEEEecCCCEecCCCeEEEeEe
Confidence 49999999999999999999999999999874
No 147
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=86.93 E-value=0.93 Score=39.33 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=29.8
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEE
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLD 243 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIE 243 (287)
...|+||..|++... +++.||.|..||.|+.|+
T Consensus 123 ~~eI~a~~~G~i~~i----------~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 123 MNEIEADKSGVVTEI----------LVENGQPVEFGQPLFVIE 155 (155)
T ss_pred ceEEecCCCeEEEEE----------EcCCCCEeCCCCEEEEeC
Confidence 458999999999886 899999999999999885
No 148
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=86.67 E-value=1.2 Score=39.67 Aligned_cols=63 Identities=27% Similarity=0.408 Sum_probs=46.8
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcc--cCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEE
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPIC--KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI 277 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V--~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~ 277 (287)
..|.+-++|++... + ++|+.|++||.++.++= .-...+--|.+ .+.++.++.|+.|.+||.|.
T Consensus 137 v~Vga~~v~~I~~~-----------~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~-~~~~~~v~~g~~V~~Ge~i~ 201 (202)
T PF02666_consen 137 VQVGALLVGSIVLT-----------VDPKEGDEVKKGEELGYFRF-GSTVVLLFPKD-KIFEWSVKPGQKVRAGETIG 201 (202)
T ss_pred EEeccceeceeEEE-----------ecccCCCEEecCcEeCEEec-CCeEEEEEeCC-CccccccCCCCEEEeeeEEe
Confidence 46667778877653 4 78999999999999985 43344433433 33389999999999999886
No 149
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=86.57 E-value=0.82 Score=44.92 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=31.3
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|+||++|.|.+..+..|+.|..|++||.+-+.
T Consensus 209 T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~ 242 (352)
T COG1566 209 TVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPL 242 (352)
T ss_pred CEEECCCCceEEeecccCCCeecCCCceEEEecc
Confidence 5799999999999999999999999999988764
No 150
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=86.41 E-value=1.1 Score=44.72 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=30.0
Q ss_pred eeeeecCCCeEEEEEecCCC-CeecCCCeEEEEecC
Q 023091 248 ELPVKSDVAGEVLKLLFDDG-DAVGFGDPLIAVLPS 282 (287)
Q Consensus 248 ~~eV~Ap~sG~Vveilv~dG-d~Ve~GqpL~~I~p~ 282 (287)
...|+||++|+|....+..| +.|..|++|+.|-|.
T Consensus 316 ~~~I~AP~dG~V~~~~~~~G~~~V~~G~~l~~IvP~ 351 (457)
T TIGR01000 316 KGVIKAPEDGVLHLNPETKGIKYVPKGTLIAQIYPI 351 (457)
T ss_pred CCEEECCCCeEEEecccCCCCcEeCCCCEEEEEecC
Confidence 46799999999997778888 589999999998765
No 151
>PRK12784 hypothetical protein; Provisional
Probab=86.21 E-value=0.92 Score=35.90 Aligned_cols=40 Identities=15% Similarity=0.137 Sum_probs=34.7
Q ss_pred cCee-eeeecCCCeEEEEEecCCCCeecCCCeEEEEecCCC
Q 023091 245 FGTE-LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFH 284 (287)
Q Consensus 245 mK~~-~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~~ 284 (287)
||.+ -+|.||+-|+|.++++++++.|--=++||.|+..+.
T Consensus 1 mk~~ie~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg 41 (84)
T PRK12784 1 MKTRMEEICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNG 41 (84)
T ss_pred CceehhhhcCccccEEEEEEEcCCceEEeeeeeeEEeecCC
Confidence 5544 469999999999999999999999999999987654
No 152
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=85.81 E-value=1.1 Score=50.45 Aligned_cols=35 Identities=34% Similarity=0.483 Sum_probs=31.9
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
..|.||..|+|.+++++.||.|+.||+|+.|+..+
T Consensus 1133 ~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK 1167 (1201)
T TIGR02712 1133 EQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMK 1167 (1201)
T ss_pred cEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecC
Confidence 45999999999999999999999999999987643
No 153
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=85.03 E-value=1.8 Score=31.81 Aligned_cols=28 Identities=36% Similarity=0.367 Sum_probs=25.1
Q ss_pred CCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 255 VAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 255 ~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
.+|++.+++++.|+.|+.|++|+.++..
T Consensus 12 ~~g~~~~~~v~~G~~v~~g~~l~~ie~~ 39 (73)
T cd06663 12 GDGTVVKWLKKVGDKVKKGDVLAEIEAM 39 (73)
T ss_pred cCEEEEEEEcCCcCEECCCCEEEEEEeC
Confidence 4789999999999999999999998753
No 154
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=84.72 E-value=1.2 Score=45.33 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=31.4
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEec
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQF 245 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEam 245 (287)
...|.||..|++... ++++||.|..||+||+|+..
T Consensus 134 ~~eI~Ap~~G~v~~i----------lv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 134 TIDIASPASGVIQEF----------LVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred eeEEecCCCeEEEEE----------EeCCCCEecCCCEEEEeccC
Confidence 468999999999875 89999999999999999753
No 155
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=84.38 E-value=2.3 Score=37.71 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.4
Q ss_pred CCCCCcccCCCEEcCCCEEEEEEe
Q 023091 221 KKQSPICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 221 p~~~p~V~vGd~Vk~GqvL~iIEa 244 (287)
..-..+|++||+|++||.|+.+.-
T Consensus 102 ~gF~~~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 102 EGFKRIAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred CceEEEecCCCEEeCCCEEEEEcH
Confidence 445678999999999999999873
No 156
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=84.11 E-value=1.7 Score=45.42 Aligned_cols=59 Identities=25% Similarity=0.319 Sum_probs=37.2
Q ss_pred CCCCCcccCCCEEcCCCEEEEEEecCee-------eeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091 221 KKQSPICKEGDVIKEGQTIGYLDQFGTE-------LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279 (287)
Q Consensus 221 p~~~p~V~vGd~Vk~GqvL~iIEamK~~-------~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I 279 (287)
+.-..+|++||+|++||.|+.++-..+. .+|--.-......+....+..|..|++++.+
T Consensus 544 ~gF~~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~~vvv~n~~~~~~~~~~~~~~~~~~~~~~~~ 609 (610)
T TIGR01995 544 EGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLDVIPTDKETVTAGDVLLRL 609 (610)
T ss_pred CCeEEEecCcCEEcCCCEEEEecHHHHHhcCCCCeeEEEEEccccccceeeccCCcccCCCeeEEe
Confidence 4456789999999999999998843322 2222111122223344555678889988865
No 157
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=83.94 E-value=1.2 Score=44.69 Aligned_cols=63 Identities=19% Similarity=0.157 Sum_probs=43.8
Q ss_pred EeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe---eeeeecC------CCeEEEEEecCCCCeecCCC
Q 023091 204 VFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT---ELPVKSD------VAGEVLKLLFDDGDAVGFGD 274 (287)
Q Consensus 204 V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~---~~eV~Ap------~sG~Vveilv~dGd~Ve~Gq 274 (287)
+.+-.-|.|+|.. +++-|.-|.+..-|- +.+|+-| ..|+|++|++++||.|+.||
T Consensus 13 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd 76 (418)
T PTZ00144 13 LLSSVKGMFRRFS----------------LRKLQPACSAHFSKSYFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDE 76 (418)
T ss_pred ccccchhHHHHHh----------------hhccchhhhhhcccccccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCC
Confidence 3455667776642 345555565554442 2344444 57899999999999999999
Q ss_pred eEEEEecC
Q 023091 275 PLIAVLPS 282 (287)
Q Consensus 275 pL~~I~p~ 282 (287)
+|+.|+..
T Consensus 77 ~L~~vEtd 84 (418)
T PTZ00144 77 VICIIETD 84 (418)
T ss_pred EEEEEEEc
Confidence 99999864
No 158
>PRK12999 pyruvate carboxylase; Reviewed
Probab=83.88 E-value=1.4 Score=49.37 Aligned_cols=33 Identities=33% Similarity=0.550 Sum_probs=31.2
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|.||..|+|++++++.||.|..||+|+.++.
T Consensus 1077 ~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~lea 1109 (1146)
T PRK12999 1077 GHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEA 1109 (1146)
T ss_pred ceEeCCceEEEEEEEcCCCCEECCCCEEEEEEc
Confidence 569999999999999999999999999999885
No 159
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=82.31 E-value=2.5 Score=44.60 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=36.1
Q ss_pred CCCCCcccCCCEEcCCCEEEEEEecCee-------eeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091 221 KKQSPICKEGDVIKEGQTIGYLDQFGTE-------LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279 (287)
Q Consensus 221 p~~~p~V~vGd~Vk~GqvL~iIEamK~~-------~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I 279 (287)
..-..+|++||+|++||.|+..+-..+. .+|--.-......+....+..|..|++|+.+
T Consensus 560 ~gF~~~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~~~vvvtn~~~~~~~~~~~~~~v~~~~~~~~~ 625 (627)
T PRK09824 560 KFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDDYTDVLPHATAQVSAGEPLLSI 625 (627)
T ss_pred CCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCeEEEEEEccccccceeeccCCcccCCCeEEEe
Confidence 4457789999999999999998733321 1111111111122333445568899988876
No 160
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=80.72 E-value=3.1 Score=36.67 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=19.8
Q ss_pred CCCCcccCCCEEcCCCEEEEEEec
Q 023091 222 KQSPICKEGDVIKEGQTIGYLDQF 245 (287)
Q Consensus 222 ~~~p~V~vGd~Vk~GqvL~iIEam 245 (287)
.-..+|++||+|++||.|+...-.
T Consensus 88 gF~~~v~~Gd~Vk~Gd~Li~fDl~ 111 (156)
T COG2190 88 GFESLVKEGDKVKAGDPLLEFDLD 111 (156)
T ss_pred ceEEEeeCCCEEccCCEEEEECHH
Confidence 344589999999999999988743
No 161
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=78.39 E-value=29 Score=34.20 Aligned_cols=104 Identities=17% Similarity=0.239 Sum_probs=63.8
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCccEEEEEeCCEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023091 90 RSPIF-PSGFEALMLEVCDETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPSP 168 (287)
Q Consensus 90 ~~~~~-~~~i~~LLie~~d~S~l~Elel~~~d~~L~L~R~~~~~~~~~p~~~~sp~~~~~~~~~p~~~~a~~a~~~~~~~ 168 (287)
..... +++|+..|.+-+ .+|+=+.++..|.++.++=..... | .. . .. .
T Consensus 139 k~~id~~~~ie~~l~~~~--~~i~WV~i~~~GT~l~I~v~E~~~----p--------------~~-----~--~~--~-- 187 (385)
T PF06898_consen 139 KFKIDSCEEIEKKLRKQF--PDISWVGIEIKGTRLIIEVVEKVD----P--------------EE-----I--DK--E-- 187 (385)
T ss_pred ecCCChHHHHHHHHHhhC--CCeEEEEEEEEeeEEEEEEEEcCC----C--------------Cc-----c--cC--C--
Confidence 33345 889999986655 479999999999998887542100 0 00 0 00 0
Q ss_pred CCCCCcccCCccccccCcchhhhhhhhcCCCCceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEE--EEEecC
Q 023091 169 PKPYSEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIG--YLDQFG 246 (287)
Q Consensus 169 ~~~~~e~~~p~~~~~~~~~~~~~a~~a~~~~~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~--iIEamK 246 (287)
.| ..|.|-..|.+.+.=. ....|.|++||.|++||+|. .|+...
T Consensus 188 --------~p-----------------------~~lVA~kdGvI~~i~v---~~G~p~Vk~Gd~VkkGdvLISG~i~~~~ 233 (385)
T PF06898_consen 188 --------EP-----------------------CNLVAKKDGVITSIIV---RSGTPLVKVGDTVKKGDVLISGVIEIEG 233 (385)
T ss_pred --------CC-----------------------cceEECCCCEEEEEEe---cCCeEEecCCCEECCCCEEEeeeEcCCC
Confidence 00 1356666676665532 34678999999999999986 555444
Q ss_pred eeeeeecCCCeEEE
Q 023091 247 TELPVKSDVAGEVL 260 (287)
Q Consensus 247 ~~~eV~Ap~sG~Vv 260 (287)
...+| ..+|.|.
T Consensus 234 ~~~~v--~A~G~V~ 245 (385)
T PF06898_consen 234 DEQEV--HADGDVK 245 (385)
T ss_pred CceEE--CCcEEEE
Confidence 33343 3446554
No 162
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=78.26 E-value=2.8 Score=48.34 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=45.9
Q ss_pred CCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 229 EGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 229 vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
.|-.+.-|-..|.+|...--..+++|..|.+++.+|++|+.|+.||+-+.|+.
T Consensus 666 ~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiEv 718 (2196)
T KOG0368|consen 666 DGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIEV 718 (2196)
T ss_pred ceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeeheh
Confidence 35567778888888887777789999999999999999999999999888763
No 163
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=77.47 E-value=2 Score=46.75 Aligned_cols=68 Identities=19% Similarity=0.160 Sum_probs=49.6
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCee-eeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTE-LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~-~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
.+|---+.|.-++ +.+-|+-..-.++..-.+++.. ..|-||..|+|+++.|..|+.|..||+|+.|+
T Consensus 1044 r~v~felNGq~R~------------i~v~Drs~~~~~~~r~KAd~~Np~higApmpG~Vv~v~V~~G~~Vk~Gd~l~~ie 1111 (1149)
T COG1038 1044 RTVYFELNGQPRE------------IKVKDRSVGSSVVARRKADPGNPGHIGAPMPGVVVEVKVKKGDKVKKGDVLAVIE 1111 (1149)
T ss_pred EEEEEEeCCceee------------eeecccccccccccccccCCCCccccCCCCCCceEEEEEccCCeecCCCeeeehh
Confidence 4565556665543 5555655555555555555542 46999999999999999999999999999876
Q ss_pred c
Q 023091 281 P 281 (287)
Q Consensus 281 p 281 (287)
.
T Consensus 1112 A 1112 (1149)
T COG1038 1112 A 1112 (1149)
T ss_pred h
Confidence 3
No 164
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=76.92 E-value=4.7 Score=37.89 Aligned_cols=75 Identities=23% Similarity=0.307 Sum_probs=48.3
Q ss_pred eEEeCCcceEEEecccc------CCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCe
Q 023091 202 VLVFSPTVGSFRRNRTV------KGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDP 275 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp------~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~Gqp 275 (287)
..|-|-++|.+...=.+ .+.....++..|+.|++||.++.++=. -...+--|.+ . .++.++.|+.|..||.
T Consensus 185 v~VgA~~Vg~I~~~~~~~~~~~~~~r~i~~~~~~~~~v~kGee~G~F~fG-STVvllf~~~-~-~~~~v~~g~~V~~Ge~ 261 (265)
T PRK03934 185 VFVGALNVGKMRFNFDERIQTNAKARFIQTYEYENLKLKKGEELGNFEMG-STIVLFSQKG-S-LEFNLKAGKSVKFGES 261 (265)
T ss_pred EEEeeEEeeEEEEEeccccccCcccCceeeeccCCceEccccEeeEEccC-CEEEEEEeCC-c-ceEccCCCCEEEcchh
Confidence 46677788876532100 001112244569999999999999854 3344444433 3 3678999999999999
Q ss_pred EEEE
Q 023091 276 LIAV 279 (287)
Q Consensus 276 L~~I 279 (287)
|..|
T Consensus 262 ig~~ 265 (265)
T PRK03934 262 IGEI 265 (265)
T ss_pred hccC
Confidence 8653
No 165
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=75.64 E-value=2.3 Score=45.64 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=29.1
Q ss_pred eeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 250 PVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 250 eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
.|-||..|+|++|.|+.|+.|..||+|+.+.
T Consensus 1108 ~igAPMpG~vieikvk~G~kV~Kgqpl~VLS 1138 (1176)
T KOG0369|consen 1108 HIGAPMPGTVIEIKVKEGAKVKKGQPLAVLS 1138 (1176)
T ss_pred cccCCCCCceEEEEEecCceecCCCceEeee
Confidence 5889999999999999999999999999875
No 166
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=75.43 E-value=5.4 Score=42.29 Aligned_cols=45 Identities=29% Similarity=0.364 Sum_probs=33.1
Q ss_pred eEEeCCcceEEEecc-c------------------------cCCCCCCCcccCCCEEcCCCEEEEEEecC
Q 023091 202 VLVFSPTVGSFRRNR-T------------------------VKGKKQSPICKEGDVIKEGQTIGYLDQFG 246 (287)
Q Consensus 202 ~~V~AP~vGtf~~~p-s------------------------p~~p~~~p~V~vGd~Vk~GqvL~iIEamK 246 (287)
..|.||..|++.... + -+|..-..+|++||+|++||.|+..+-..
T Consensus 536 ~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~ 605 (648)
T PRK10255 536 KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDY 605 (648)
T ss_pred CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 479999999876532 1 01244567799999999999999987433
No 167
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=75.25 E-value=4.3 Score=40.51 Aligned_cols=36 Identities=28% Similarity=0.501 Sum_probs=31.8
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG 246 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK 246 (287)
...|.||..|++... ++++||.|..|+.|+.|+...
T Consensus 45 ~~ei~a~~~G~v~~i----------~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 45 VLEVPAPAAGVLSEI----------LAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred eeEEecCCCEEEEEE----------EeCCCCEeCCCCEEEEEecCC
Confidence 368999999999875 899999999999999998654
No 168
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=73.96 E-value=2.3 Score=35.78 Aligned_cols=24 Identities=21% Similarity=0.327 Sum_probs=20.4
Q ss_pred CCCCCcccCCCEEcCCCEEEEEEe
Q 023091 221 KKQSPICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 221 p~~~p~V~vGd~Vk~GqvL~iIEa 244 (287)
..-..+|+.||+|++||.|+.+.-
T Consensus 80 ~gF~~~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 80 EGFTSHVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred CceEEEecCCCEEcCCCEEEEEcH
Confidence 445678999999999999999873
No 169
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=73.95 E-value=8.2 Score=44.12 Aligned_cols=59 Identities=24% Similarity=0.288 Sum_probs=46.5
Q ss_pred CCCCcccCCCEEcCCCEEEEEEec-------CeeeeeecCCCeEEE----------------------------------
Q 023091 222 KQSPICKEGDVIKEGQTIGYLDQF-------GTELPVKSDVAGEVL---------------------------------- 260 (287)
Q Consensus 222 ~~~p~V~vGd~Vk~GqvL~iIEam-------K~~~eV~Ap~sG~Vv---------------------------------- 260 (287)
..=.||+.|+.|+++|+|+.+-+. |....|+|+.+|+|.
T Consensus 402 ~s~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~fst~V~h~~rtrhGNva~ll~ktGhLWILSG~vy 481 (1331)
T PRK02597 402 GSLLFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVRFADLIPEEKTDRQGNTTRKAQRGGLLWVLSGDVY 481 (1331)
T ss_pred CCEEEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEEECCCccccccccCCceeEEeccCcEEEEEeCCeE
Confidence 445689999999999999999874 344689999999764
Q ss_pred ------EEecCCCCeecCCCeEEEEe
Q 023091 261 ------KLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 261 ------eilv~dGd~Ve~GqpL~~I~ 280 (287)
.++++|||.|..++.|++.+
T Consensus 482 nlp~~S~LfvKdqDqV~~~sVLAEtk 507 (1331)
T PRK02597 482 NLPPGAEPVVSNGDRVEEGDVLAETK 507 (1331)
T ss_pred eeCCCceEEEeCCCEEccCceEEEEe
Confidence 24577888888888888654
No 170
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=73.72 E-value=4.6 Score=36.27 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=27.7
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEE
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLD 243 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIE 243 (287)
..|+||+.|.+... ++.+|+.|..|+.|+.|-
T Consensus 89 ~~i~AP~dG~V~~~----------~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 89 VEVRSPFDGYITQK----------SVTLGDYVAPQAELFRVA 120 (265)
T ss_pred EEEECCCCeEEEEE----------EcCCCCEeCCCCceEEEE
Confidence 45899999999875 679999999999999764
No 171
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=73.17 E-value=4.2 Score=36.81 Aligned_cols=33 Identities=36% Similarity=0.532 Sum_probs=28.3
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa 244 (287)
..|.++..|.+... +|++||.|++||.|..++.
T Consensus 67 ~~v~~~~~G~v~~i----------~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 67 VEVLARVAGIVAEI----------LVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eeEecccccEEEEE----------EccCCCeecCCCEEEEECC
Confidence 35777788888765 8999999999999999986
No 172
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=72.88 E-value=4.5 Score=37.87 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=44.0
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEE
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIA 278 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~ 278 (287)
..|-+-++|.+.. ...|+.|++||.++.++=. -...+--|.+-.-....+..|+.|..||.|..
T Consensus 194 v~Vga~~Vg~I~~------------~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~ 257 (259)
T PRK03140 194 VKVGAMFVNSIEL------------THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGT 257 (259)
T ss_pred EEEeeEEeeEEEE------------ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhcc
Confidence 3455566666652 3579999999999999855 44444445432223456788999999998864
No 173
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=72.87 E-value=2.9 Score=41.70 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=31.2
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEec
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQF 245 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEam 245 (287)
.+.|.||..|++... +|++||+|+.||.|+.|+..
T Consensus 115 tv~V~sP~sGvi~e~----------lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 115 TVEVPSPASGVITEL----------LVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred eeeccCCCcceeeEE----------ecCCCCcccCCceeEEecCC
Confidence 468999999999874 89999999999999999854
No 174
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=72.74 E-value=5.1 Score=48.49 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=23.4
Q ss_pred CCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCe
Q 023091 222 KQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAG 257 (287)
Q Consensus 222 ~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG 257 (287)
++..+|+.|+.|++||+||.-.. -..+|-++++|
T Consensus 2421 ga~l~v~~g~~V~~g~~la~wdp--~~~piisE~~G 2454 (2836)
T PRK14844 2421 GAKLYVDEGGSVKIGDKVAEWDP--YTLPIITEKTG 2454 (2836)
T ss_pred ccEEEecCCCEecCCCEEEEEcC--CCcceEeecce
Confidence 45668999999999999997643 22344444444
No 175
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=72.64 E-value=57 Score=32.31 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=28.4
Q ss_pred CCCCChhHHHHHHHHHHhcCCccEEEEEeCCEEEEEEec
Q 023091 90 RSPIFPSGFEALMLEVCDETEIAELKLKVGDFEMHLKRN 128 (287)
Q Consensus 90 ~~~~~~~~i~~LLie~~d~S~l~Elel~~~d~~L~L~R~ 128 (287)
+....+++|++.|.+ +-.+|+=+.++-.|.+|+++=.
T Consensus 136 k~~id~~~ie~~l~~--~~~~i~WV~v~i~GTrl~i~v~ 172 (382)
T TIGR02876 136 KFSVDVYKLERKLLD--RVPEIMWAGVRVRGTTLVIKVV 172 (382)
T ss_pred eCCCCHHHHHHHHHh--hCCCcEEEEEEEEeEEEEEEEE
Confidence 334569999998754 4578899999999998888754
No 176
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=71.98 E-value=5.9 Score=39.50 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=31.4
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEec
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQF 245 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEam 245 (287)
...|.||..|++... ++++||.|+.|++|++|+..
T Consensus 43 ~~ei~a~~~G~v~~i----------~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 43 VLEVPSPADGVLQEI----------LFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred eeEEecCCCEEEEEE----------EeCCCCEeCCCCEEEEEecC
Confidence 468999999999875 79999999999999999854
No 177
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=70.88 E-value=5.5 Score=39.70 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=32.3
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG 246 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK 246 (287)
..+|.||..|++... ++++||.|..|++||.|+...
T Consensus 45 ~~EV~ap~~G~l~~i----------~~~~G~~V~Vg~~I~~i~~~~ 80 (404)
T COG0508 45 TMEVPAPDAGVLAKI----------LVEEGDTVPVGAVIARIEEEG 80 (404)
T ss_pred eEEecCCCCeEEEEE----------eccCCCEEcCCCeEEEEecCC
Confidence 468999999999875 899999999999999999763
No 178
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=70.48 E-value=12 Score=32.83 Aligned_cols=52 Identities=25% Similarity=0.392 Sum_probs=42.0
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeee-eeecCCCeEEEEEe
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTEL-PVKSDVAGEVLKLL 263 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~-eV~Ap~sG~Vveil 263 (287)
....-|.-|-+.. +.+.+|+.|++|+.++-+.+.|... =+.+|++|+|+-+.
T Consensus 92 ~ll~iPvEGYvVt----------pIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~ 144 (161)
T COG4072 92 ELLLIPVEGYVVT----------PIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYID 144 (161)
T ss_pred EEEEEecCcEEEE----------EeecccchhcCCCceeEEEecccceEEecCCCCcEEEEEe
Confidence 3455677776554 3689999999999999999999765 48999999998775
No 179
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=70.39 E-value=3.2 Score=35.06 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=20.9
Q ss_pred CCCCCCcccCCCEEcCCCEEEEEEe
Q 023091 220 GKKQSPICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 220 ~p~~~p~V~vGd~Vk~GqvL~iIEa 244 (287)
+..-.++|++||+|++||.|+.+.-
T Consensus 79 g~gF~~~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 79 GEGFTSHVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred CCceEEEecCCCEEcCCCEEEEEcH
Confidence 3456678999999999999999873
No 180
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=70.03 E-value=8.4 Score=36.22 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=30.5
Q ss_pred eeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091 247 TELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 247 ~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
....|+|+.+|.+. ..++.||.|..||+|++|...+
T Consensus 218 ~~~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d~~ 253 (287)
T cd06251 218 SSVWVRAPQGGLLR-SLVKLGDKVKKGQLLATITDPF 253 (287)
T ss_pred CCeEEecCCCeEEE-EecCCCCEECCCCEEEEEECCC
Confidence 33679999999876 5899999999999999997644
No 181
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=68.64 E-value=2.9 Score=35.61 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=19.9
Q ss_pred CCCCCCcccCCCEEcCCCEEEEEEecCe
Q 023091 220 GKKQSPICKEGDVIKEGQTIGYLDQFGT 247 (287)
Q Consensus 220 ~p~~~p~V~vGd~Vk~GqvL~iIEamK~ 247 (287)
+.+-.++|++||+|++||.|+.+.-.++
T Consensus 83 G~gF~~~v~~G~~V~~G~~L~~~D~~~i 110 (132)
T PF00358_consen 83 GEGFETLVKEGDKVKAGQPLIEFDLEKI 110 (132)
T ss_dssp TTTEEESS-TTSEE-TTEEEEEE-HHHH
T ss_pred CcceEEEEeCCCEEECCCEEEEEcHHHH
Confidence 3455678999999999999999875443
No 182
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=67.13 E-value=6.1 Score=41.06 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=26.2
Q ss_pred CCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091 255 VAGEVLKLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 255 ~sG~Vveilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
..|+|+++++++||.|+.||+|+.|+...
T Consensus 125 ~eg~I~~W~vkeGD~V~~g~~l~eVETDK 153 (539)
T PLN02744 125 TEGNIARWLKKEGDKVSPGEVLCEVETDK 153 (539)
T ss_pred ceeEEEEEEecCCCEecCCCeeEEEeecc
Confidence 45999999999999999999999998654
No 183
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=66.39 E-value=7.7 Score=36.81 Aligned_cols=35 Identities=26% Similarity=0.206 Sum_probs=30.1
Q ss_pred CeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 246 GTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 246 K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
....-|+||.+|.+.. .++-||.|+.||.|+.|..
T Consensus 162 ~~Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~ 196 (256)
T TIGR03309 162 THERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD 196 (256)
T ss_pred cceEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC
Confidence 3356799999998876 8999999999999999863
No 184
>COG3608 Predicted deacylase [General function prediction only]
Probab=66.34 E-value=6.8 Score=38.40 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=28.6
Q ss_pred eeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 250 PVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 250 eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
-|+||..|. ++.+++-||.|+.||.|+.|.+.
T Consensus 258 ~i~Ap~~G~-v~~~v~lGd~VeaG~~la~i~~~ 289 (331)
T COG3608 258 MIRAPAGGL-VEFLVDLGDKVEAGDVLATIHDP 289 (331)
T ss_pred eeecCCCce-EEEeecCCCcccCCCeEEEEecC
Confidence 499999995 57999999999999999999864
No 185
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=66.18 E-value=8.1 Score=29.70 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=21.6
Q ss_pred CCCeEEEEEecCCCCeecCCCeEEEEecCCC
Q 023091 254 DVAGEVLKLLFDDGDAVGFGDPLIAVLPSFH 284 (287)
Q Consensus 254 p~sG~Vveilv~dGd~Ve~GqpL~~I~p~~~ 284 (287)
+..|. .++++-||.|+.||||++|...+.
T Consensus 30 ~~vGi--~l~~k~Gd~V~~Gd~l~~i~~~~~ 58 (75)
T PF07831_consen 30 PAVGI--ELHKKVGDRVEKGDPLATIYANDE 58 (75)
T ss_dssp TT-EE--EESS-TTSEEBTTSEEEEEEESSS
T ss_pred cCcCe--EecCcCcCEECCCCeEEEEEcCCh
Confidence 34453 578999999999999999986544
No 186
>PRK11637 AmiB activator; Provisional
Probab=65.86 E-value=17 Score=35.97 Aligned_cols=14 Identities=14% Similarity=-0.109 Sum_probs=9.7
Q ss_pred eEEeCCcceEEEec
Q 023091 202 VLVFSPTVGSFRRN 215 (287)
Q Consensus 202 ~~V~AP~vGtf~~~ 215 (287)
..|+|+..|++...
T Consensus 340 ~~v~A~~~G~V~~~ 353 (428)
T PRK11637 340 TEVKAIADGRVLLA 353 (428)
T ss_pred CeEEecCCeEEEEe
Confidence 46788888876543
No 187
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=65.02 E-value=10 Score=37.86 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=31.1
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG 246 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK 246 (287)
...+.+|..|++... ++++||.|+.|++|+.|+..+
T Consensus 41 ~~ev~a~~~G~v~~i----------~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 41 TIEITSRYKGKVAQI----------NFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred eEEEecCCCEEEEEE----------EeCCCCEeCCCCEEEEEeccC
Confidence 367999999999875 899999999999999997543
No 188
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=64.96 E-value=12 Score=35.38 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=30.7
Q ss_pred eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCCC
Q 023091 248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFH 284 (287)
Q Consensus 248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~~ 284 (287)
...|+||.+|.+ +..++-|+.|..||.|++|...+.
T Consensus 231 ~~~v~Ap~~Gi~-~~~~~~G~~V~~Gq~lg~I~dp~g 266 (293)
T cd06255 231 RDWVAAIHGGLF-EPSVPAGDTIPAGQPLGRVVDLYG 266 (293)
T ss_pred eEEEecCCCeEE-EEecCCCCEecCCCEEEEEECCCC
Confidence 567999999976 477899999999999999986554
No 189
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=64.88 E-value=5.7 Score=41.44 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=28.2
Q ss_pred eecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 251 VKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 251 V~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
+.||..|.|.+++|+.|+.|..||.|..+.
T Consensus 604 ~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~ 633 (670)
T KOG0238|consen 604 IVAPMPGIIEKVLVKPGDKVKEGQELVVLI 633 (670)
T ss_pred eecCCCCeeeeeeccchhhhcccCceEEEE
Confidence 789999999999999999999999988775
No 190
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=63.41 E-value=6.6 Score=34.41 Aligned_cols=43 Identities=26% Similarity=0.317 Sum_probs=28.2
Q ss_pred CEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCCC
Q 023091 231 DVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFH 284 (287)
Q Consensus 231 d~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~~ 284 (287)
-.+++|+.||.+++ .|..+-+.+..|+.|..|+.|+.+..-..
T Consensus 74 ~~l~~G~~L~l~~v-----------eG~~v~~i~~~G~rV~~gd~lA~v~T~KG 116 (150)
T PF09891_consen 74 ILLKKGTELCLVPV-----------EGYQVYPIVDEGDRVRKGDRLAYVTTRKG 116 (150)
T ss_dssp EEE-TT-B-EEEEE-----------ESSEEEESS-TSEEE-TT-EEEEEE-TTS
T ss_pred EEECCCCEEEEEEe-----------cceEEEEEcccCcEeccCcEEEEEEecCc
Confidence 34778899999875 45566778899999999999999876543
No 191
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=62.86 E-value=42 Score=25.74 Aligned_cols=23 Identities=22% Similarity=0.128 Sum_probs=13.5
Q ss_pred EEEEecCCCCeecCCCeEEEEec
Q 023091 259 VLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 259 Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
+..+.++.||.|..||.|..+..
T Consensus 52 l~~~~v~~G~~V~~G~~IG~~g~ 74 (96)
T PF01551_consen 52 LDSVSVKVGDRVKAGQVIGTVGN 74 (96)
T ss_dssp ESEESS-TTSEE-TTCEEEEEBS
T ss_pred cccccceecccccCCCEEEecCC
Confidence 33445677777777777777663
No 192
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=61.11 E-value=12 Score=37.57 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=31.3
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCE-EcCCCEEEEEEec
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDV-IKEGQTIGYLDQF 245 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~-Vk~GqvL~iIEam 245 (287)
...|.||..|++... ++++||. |..|++|++|+..
T Consensus 42 ~~ei~a~~~G~l~~i----------~v~~g~~~v~vG~~l~~i~~~ 77 (435)
T TIGR01349 42 TMEFEAVEEGYLAKI----------LVPEGTKDVPVNKPIAVLVEE 77 (435)
T ss_pred eeEEcCCCCEEEEEE----------EECCCCEEecCCCEEEEEecc
Confidence 368999999999875 8999999 9999999999754
No 193
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=60.76 E-value=7.4 Score=30.29 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=16.3
Q ss_pred CcccCCCEEcCCCEEEEEEe
Q 023091 225 PICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEa 244 (287)
|+++.|+.|++||+|+.++.
T Consensus 49 ~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 49 WLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp ESS-TT-EEETTCEEEEEEE
T ss_pred EEeCCCCCccCCcEEEEEEe
Confidence 58999999999999999984
No 194
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=60.61 E-value=8.4 Score=35.40 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=24.7
Q ss_pred EEeCCcceEEEeccccCCCC-----------------CCCcccCCCEEcCCCEEEEEEec
Q 023091 203 LVFSPTVGSFRRNRTVKGKK-----------------QSPICKEGDVIKEGQTIGYLDQF 245 (287)
Q Consensus 203 ~V~AP~vGtf~~~psp~~p~-----------------~~p~V~vGd~Vk~GqvL~iIEam 245 (287)
.|+||..|.+.-... +-. ...++++|+.|..|+.|+.|=..
T Consensus 136 ~i~Ap~~G~V~~~~d--~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~l~~i~~~ 193 (328)
T PF12700_consen 136 QIKAPFDGVVSYSID--GYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQPLFTIADL 193 (328)
T ss_dssp HEE-SSSEEEE--------------EES----------E-TT-TT-EETSTTCSEEEEEE
T ss_pred ccccchhhhcccccc--ccccccccccccccccccccceeccCCCCEECCCceeeeeccC
Confidence 499999999981000 000 03478999999999999977533
No 195
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=60.56 E-value=15 Score=34.90 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=29.7
Q ss_pred eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091 248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
..-|+||.+|.+. -+++-|+.|..||.|.+|...+
T Consensus 229 ~~~v~A~~~Gl~~-~~~~~G~~V~~Gq~lg~i~dp~ 263 (298)
T cd06253 229 VVYVNAETSGIFV-PAKHLGDIVKRGDVIGEIVDPL 263 (298)
T ss_pred eEEEEcCCCeEEE-ECcCCCCEECCCCEEEEEeCCC
Confidence 4579999999765 5689999999999999998654
No 196
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=60.48 E-value=23 Score=34.60 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=18.1
Q ss_pred EEecCCCCeecCCCeEEEEecCC
Q 023091 261 KLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 261 eilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
+++|++||.|..||.|.++...+
T Consensus 271 ~i~Vk~Gq~V~~Gq~Ig~~G~tg 293 (319)
T PRK10871 271 TMLVREQQEVKAGQKIATMGSTG 293 (319)
T ss_pred ccccCCcCEECCCCeEEeEcCCC
Confidence 45788899999999998877543
No 197
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=60.12 E-value=8 Score=29.81 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=17.4
Q ss_pred CCCcccCCCEEcCCCEEEEEEec
Q 023091 223 QSPICKEGDVIKEGQTIGYLDQF 245 (287)
Q Consensus 223 ~~p~V~vGd~Vk~GqvL~iIEam 245 (287)
.+..|+.||.|++||.|+.+...
T Consensus 53 ~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 53 DSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp SEESS-TTSEE-TTCEEEEEBSC
T ss_pred ccccceecccccCCCEEEecCCC
Confidence 34569999999999999998744
No 198
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=59.73 E-value=17 Score=36.86 Aligned_cols=62 Identities=21% Similarity=0.161 Sum_probs=45.2
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
.+|+||..|++.-+ .||=.=| -|.||+..+..+-|.+- ...|+|..|+.|..|+||..+..
T Consensus 332 a~V~A~AdG~VvyA--------~~l~GYG-------~vvIldhG~gy~slyg~----~~~i~v~~G~~V~AGepIa~~G~ 392 (420)
T COG4942 332 ATVKAIADGRVVYA--------DWLRGYG-------LVVILDHGGGYHSLYGG----NQSILVNPGQFVKAGEPIALVGS 392 (420)
T ss_pred CeeeeecCceEEec--------hhhccCc-------eEEEEEcCCccEEEecc----cceeeecCCCEeecCCchhhccC
Confidence 36778888876543 3443322 35578888888877765 45789999999999999999876
Q ss_pred C
Q 023091 282 S 282 (287)
Q Consensus 282 ~ 282 (287)
+
T Consensus 393 s 393 (420)
T COG4942 393 S 393 (420)
T ss_pred C
Confidence 5
No 199
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=59.23 E-value=17 Score=37.56 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=35.0
Q ss_pred EEEEecCeeeeeecCCCeEEEEE------------------------ecCCCCeecCCCeEEEEecCC
Q 023091 240 GYLDQFGTELPVKSDVAGEVLKL------------------------LFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 240 ~iIEamK~~~eV~Ap~sG~Vvei------------------------lv~dGd~Ve~GqpL~~I~p~~ 283 (287)
+.+..-+...+|.|+.+|.|..| +++-||.|+.|||||+|....
T Consensus 405 ~~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~~ 472 (493)
T TIGR02645 405 DDIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAES 472 (493)
T ss_pred cccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECCC
Confidence 44445566788999999988754 578999999999999998543
No 200
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=58.71 E-value=11 Score=29.32 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=20.2
Q ss_pred eEEEEEecCCCCeecCCCeEEEEec
Q 023091 257 GEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 257 G~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
|.-++++++||+.|..|++|++++.
T Consensus 44 ~~~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 44 GLEVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp TEEEEESS-TT-EEETTCEEEEEEE
T ss_pred cEEEEEEeCCCCCccCCcEEEEEEe
Confidence 6567799999999999999999974
No 201
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=58.60 E-value=16 Score=36.02 Aligned_cols=35 Identities=31% Similarity=0.573 Sum_probs=31.1
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG 246 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK 246 (287)
..|.||..|++... ++++|+.|..|+.|+.|+...
T Consensus 46 ~~i~Ap~~G~i~~~----------~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 46 VEIPSPVAGTVAKL----------LVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred EEEeCCCCeEEEEE----------ecCCCCEeCCCCEEEEEecCC
Confidence 67999999999875 799999999999999998654
No 202
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=57.75 E-value=12 Score=36.87 Aligned_cols=65 Identities=17% Similarity=0.020 Sum_probs=42.7
Q ss_pred CCCceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe-------cCCCCee
Q 023091 198 SNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL-------FDDGDAV 270 (287)
Q Consensus 198 ~~~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil-------v~dGd~V 270 (287)
-+++..|..-.-|+-+.. .|.+ +-.+ ....+..-..|.|..+|+|+++. |+.||.|
T Consensus 156 ~~~i~WV~i~~~GT~l~I----------~v~E-----~~~p--~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~V 218 (385)
T PF06898_consen 156 FPDISWVGIEIKGTRLII----------EVVE-----KVDP--EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTV 218 (385)
T ss_pred CCCeEEEEEEEEeeEEEE----------EEEE-----cCCC--CcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEE
Confidence 345678888888885543 1111 1111 22233444678899999999997 5666789
Q ss_pred cCCCeEEEE
Q 023091 271 GFGDPLIAV 279 (287)
Q Consensus 271 e~GqpL~~I 279 (287)
..||.|..=
T Consensus 219 kkGdvLISG 227 (385)
T PF06898_consen 219 KKGDVLISG 227 (385)
T ss_pred CCCCEEEee
Confidence 999999853
No 203
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=57.13 E-value=21 Score=37.56 Aligned_cols=54 Identities=24% Similarity=0.492 Sum_probs=35.4
Q ss_pred CCcccCCCEEcCCCEEEEEEec-----CeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 224 SPICKEGDVIKEGQTIGYLDQF-----GTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 224 ~p~V~vGd~Vk~GqvL~iIEam-----K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
.|.+++||.|..||+++.+.-. |.|.+ ..+.|++++| +.+|+. ...+.++.++.
T Consensus 121 ~p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp--~~~~g~~~~i-~~~G~y-tv~~~i~~~~~ 179 (586)
T PRK04192 121 TPTVKVGDKVEAGDILGTVQETPSIEHKIMVP--PGVSGTVKEI-VSEGDY-TVDDTIAVLED 179 (586)
T ss_pred ecccccCCEecCCceEEEEecCCceeeeeecC--CCCceEEEEE-ccCCCc-eeeeEEEEEEc
Confidence 3579999999999999997754 33333 3458988777 334442 22455555553
No 204
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=56.99 E-value=19 Score=35.20 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=29.4
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecCCC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFH 284 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~~ 284 (287)
.-|+||..|.+. -+++-|+.|+.||+|++|...+.
T Consensus 290 ~~v~Ap~~Gl~~-~~~~~Gd~V~~G~~lg~I~d~~g 324 (359)
T cd06250 290 EMLYAPAGGMVV-YRAAPGDWVEAGDVLAEILDPLG 324 (359)
T ss_pred EEEeCCCCeEEE-EecCCCCEecCCCEEEEEECCCC
Confidence 349999999765 67899999999999999976544
No 205
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=56.80 E-value=7.5 Score=36.87 Aligned_cols=30 Identities=33% Similarity=0.517 Sum_probs=26.0
Q ss_pred eecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 251 VKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 251 V~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
+..++-|..-+++|++||.|..||+||.=+
T Consensus 32 ~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~dK 61 (257)
T PF05896_consen 32 LPDDFPGMKPKMLVKEGDRVKAGQPLFEDK 61 (257)
T ss_pred cCcccCCCCccEEeccCCEEeCCCeeEeeC
Confidence 456788888999999999999999999743
No 206
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=56.58 E-value=28 Score=32.63 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=25.6
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEE
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLD 243 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIE 243 (287)
...|+||+.|.+... ++.+|+.|.. +.|+.|-
T Consensus 204 ~~~i~AP~dG~V~~~----------~~~~G~~v~~-~~l~~i~ 235 (327)
T TIGR02971 204 LTYVKAPIDGRVLKI----------HAREGEVIGS-EGILEMG 235 (327)
T ss_pred cCEEECCCCeEEEEE----------ecCCCCccCC-CccEEEe
Confidence 358999999999875 6899999987 6666554
No 207
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=55.17 E-value=23 Score=33.23 Aligned_cols=36 Identities=28% Similarity=0.198 Sum_probs=29.6
Q ss_pred eeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091 247 TELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 247 ~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
-..-++||.+|.+. .+++-|+.|..||+|+.|...+
T Consensus 222 ~~~~v~Ap~~G~~~-~~~~~G~~V~~G~~lg~i~dp~ 257 (288)
T cd06254 222 DVYYVTSPASGLWY-PFVKAGDTVQKGALLGYVTDYF 257 (288)
T ss_pred CCEEEecCCCeEEE-EecCCCCEecCCCEEEEEECCC
Confidence 34568999999764 6789999999999999997544
No 208
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=54.73 E-value=13 Score=36.77 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=40.5
Q ss_pred CCCceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe-------cCCCCee
Q 023091 198 SNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL-------FDDGDAV 270 (287)
Q Consensus 198 ~~~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil-------v~dGd~V 270 (287)
-+++..|..-.-|+-+..- |.+... .-..+....-..|.|..+|+|+++. |+.||.|
T Consensus 152 ~~~i~WV~v~i~GTrl~i~----------v~Ek~~------~p~~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~V 215 (382)
T TIGR02876 152 VPEIMWAGVRVRGTTLVIK----------VVEKQE------PKPVLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVV 215 (382)
T ss_pred CCCcEEEEEEEEeEEEEEE----------EEecCC------CCCccccCCCccEEECCCCEEEEEEEcCCeEEEccCCEE
Confidence 3567788888999855321 111110 0000122233568899999999998 5566789
Q ss_pred cCCCeEEE
Q 023091 271 GFGDPLIA 278 (287)
Q Consensus 271 e~GqpL~~ 278 (287)
..||.|..
T Consensus 216 kkGqvLIs 223 (382)
T TIGR02876 216 KKGDLLIS 223 (382)
T ss_pred cCCCEEEE
Confidence 99999984
No 209
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=53.12 E-value=28 Score=30.49 Aligned_cols=42 Identities=31% Similarity=0.457 Sum_probs=33.7
Q ss_pred EcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCCCC
Q 023091 233 IKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHD 285 (287)
Q Consensus 233 Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~~~ 285 (287)
+++|+.|..| |+.|-++-..+.-|..|-.|++++.+..-..+
T Consensus 87 lkkGd~ll~i-----------PvEGYvVtpIaDvG~RvrkGd~~AAvttRkG~ 128 (161)
T COG4072 87 LKKGDELLLI-----------PVEGYVVTPIADVGNRVRKGDPFAAVTTRKGE 128 (161)
T ss_pred ecCCCEEEEE-----------ecCcEEEEEeecccchhcCCCceeEEEecccc
Confidence 4556666554 78899999999999999999999998865544
No 210
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=53.05 E-value=22 Score=32.79 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=35.0
Q ss_pred CCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEE
Q 023091 230 GDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI 277 (287)
Q Consensus 230 Gd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~ 277 (287)
|+.|++||.++.++= .-...+--|.+-.-.+..+..|+.|.+||.|.
T Consensus 189 g~~v~kGee~G~F~f-GStVvllf~~~~~~~~~~v~~g~kV~~Ge~lg 235 (238)
T TIGR00163 189 PVKLLKGEEMGYFEL-GSTVILLFEADAFQLSAHLAVGQEVKIGELLA 235 (238)
T ss_pred CceeccccEeeeEcC-CCeEEEEEeCCCcccChhhccCCEEEcChhhc
Confidence 999999999999985 34444555543222367788999999999885
No 211
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=53.04 E-value=21 Score=39.88 Aligned_cols=55 Identities=22% Similarity=0.427 Sum_probs=37.1
Q ss_pred CcccCCCEEcCCCEEEEEEecC-eeeeee--cCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 225 PICKEGDVIKEGQTIGYLDQFG-TELPVK--SDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEamK-~~~eV~--Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
|.+++||+|..||+++.+.--. +.+-|- .-+.|+|+.| +..|+ -...+.++.++.
T Consensus 122 p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~-~~~~~~~~~~~~ 179 (1017)
T PRK14698 122 PKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGE-YTIEEVIAKVKT 179 (1017)
T ss_pred eeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCC-cceeeEEEEEEc
Confidence 4589999999999999876322 222232 2358999887 44565 233577888775
No 212
>PRK04350 thymidine phosphorylase; Provisional
Probab=53.00 E-value=25 Score=36.32 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=33.7
Q ss_pred EEecCeeeeeecCCCeEEEEE------------------------ecCCCCeecCCCeEEEEecCC
Q 023091 242 LDQFGTELPVKSDVAGEVLKL------------------------LFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 242 IEamK~~~eV~Ap~sG~Vvei------------------------lv~dGd~Ve~GqpL~~I~p~~ 283 (287)
+..-+...+|.|+.+|.|..| +++-||.|+.||||++|....
T Consensus 399 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~~ 464 (490)
T PRK04350 399 IPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAES 464 (490)
T ss_pred cCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecCC
Confidence 445566788999999988754 578999999999999998543
No 213
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=52.52 E-value=22 Score=34.66 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=31.3
Q ss_pred eEEeCCcceEEEecccc-CC------------------CCCCCcccCCCEEcCCCEEEEEEe
Q 023091 202 VLVFSPTVGSFRRNRTV-KG------------------KKQSPICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp-~~------------------p~~~p~V~vGd~Vk~GqvL~iIEa 244 (287)
..|+|+..|++.....- .+ ......|++||.|++||.|+.+-.
T Consensus 230 ~pV~Aaa~G~Vv~ag~~~~gyGn~ViI~H~~g~~S~Yahl~~i~Vk~Gq~V~~Gq~Ig~~G~ 291 (319)
T PRK10871 230 QAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGS 291 (319)
T ss_pred CeEEeccCeEEEEEeeccCCcceEEEEEeCCceEEEeeCCCccccCCcCEECCCCeEEeEcC
Confidence 47999999987665320 00 123567999999999999998764
No 214
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=51.87 E-value=9.7 Score=40.79 Aligned_cols=32 Identities=38% Similarity=0.637 Sum_probs=27.0
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEE
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLD 243 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIE 243 (287)
++.|-|-|+|.+... +++||.|++||.|++..
T Consensus 885 ~VaiGAmMVGSi~lt-----------~kEgd~V~~gdELGYFk 916 (975)
T KOG2419|consen 885 FVAIGAMMVGSILLT-----------RKEGDHVKKGDELGYFK 916 (975)
T ss_pred EEeecceeeeeEEEE-----------eecCcccccccccceEe
Confidence 567889999988763 89999999999888765
No 215
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=51.63 E-value=27 Score=32.56 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=34.4
Q ss_pred cccCCCEEcC-CCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEE
Q 023091 226 ICKEGDVIKE-GQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIA 278 (287)
Q Consensus 226 ~V~vGd~Vk~-GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~ 278 (287)
.+..|+.+.+ |+.|+... -.++++|.+|.|.- -....|..|+...+
T Consensus 225 ~~~~~~~~~~~G~~la~~~----~~~~~ap~~g~vl~---~p~~~~~~G~~~~~ 271 (272)
T cd06910 225 PFRGGETIPRAGTVIAHDG----GEPIRTPYDDCVLI---MPSLRPLRGQTAVR 271 (272)
T ss_pred CcCCcceeccCCcEEEEeC----CeEEeCCCCCEEEE---ccCCCCCCCceeee
Confidence 3677999999 99999943 28899999997643 34555557887665
No 216
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=49.93 E-value=29 Score=35.92 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=33.4
Q ss_pred EEecCeeeeeecCCCeEEEEE------------------------ecCCCCeecCCCeEEEEecCC
Q 023091 242 LDQFGTELPVKSDVAGEVLKL------------------------LFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 242 IEamK~~~eV~Ap~sG~Vvei------------------------lv~dGd~Ve~GqpL~~I~p~~ 283 (287)
+-.-+...+|.|+.+|.|..| +++-||.|+.||||++|....
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~~ 473 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAES 473 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECCC
Confidence 334556678999999988754 578899999999999998543
No 217
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=48.89 E-value=22 Score=28.00 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=24.7
Q ss_pred CCCeEEEEEecCC-CCeecCCCeEEEEecCC
Q 023091 254 DVAGEVLKLLFDD-GDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 254 p~sG~Vveilv~d-Gd~Ve~GqpL~~I~p~~ 283 (287)
..-|.|..+.... |+.|+.|++|+.|+..+
T Consensus 26 ~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k 56 (96)
T cd06848 26 DLLGDIVFVELPEVGTEVKKGDPFGSVESVK 56 (96)
T ss_pred hhCCCEEEEEecCCCCEEeCCCEEEEEEEcc
Confidence 4578888877666 99999999999998653
No 218
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=47.61 E-value=53 Score=34.55 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=39.8
Q ss_pred CCCcccCCCEEcCCCEEEEEEecCeeee--eecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091 223 QSPICKEGDVIKEGQTIGYLDQFGTELP--VKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 223 ~~p~V~vGd~Vk~GqvL~iIEamK~~~e--V~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
-.|.|++||.|..||+|+.+.---.+.- |.-+..|.++.+.+..|+. ...+.+++++..+
T Consensus 118 F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~y-tv~d~ia~v~~~~ 179 (588)
T COG1155 118 FVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGEY-TVEDVIATVSTEG 179 (588)
T ss_pred cccccccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCCc-eeeEEEEEEecCC
Confidence 3466799999999999998764332222 3445566677777777753 2356777776543
No 219
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=46.93 E-value=36 Score=32.44 Aligned_cols=35 Identities=23% Similarity=0.043 Sum_probs=29.6
Q ss_pred eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091 248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
..-|+||.+|.+. -.++-|+.|+.||+|.+|...+
T Consensus 244 ~~~v~A~~~G~~~-~~~~~G~~V~~G~~lg~i~d~~ 278 (316)
T cd06252 244 RCYVFAPHPGLFE-PLVDLGDEVSAGQVAGRIHFPE 278 (316)
T ss_pred cEEEEcCCCeEEE-EecCCCCEEcCCCEEEEEECCC
Confidence 3569999999764 6789999999999999998654
No 220
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=46.76 E-value=30 Score=33.44 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=27.9
Q ss_pred eeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 250 PVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 250 eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
-|+||.+|.+. -.++-|+.|..||+|++|..
T Consensus 257 ~v~Ap~~Gi~~-~~v~~G~~V~~G~~lg~I~d 287 (325)
T TIGR02994 257 FIFAEDDGLIE-FMIDLGDPVSKGDVIARVYP 287 (325)
T ss_pred EEEcCCCeEEE-EecCCCCEeCCCCEEEEEEC
Confidence 49999999765 77999999999999999986
No 221
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=46.49 E-value=66 Score=32.17 Aligned_cols=55 Identities=25% Similarity=0.376 Sum_probs=35.7
Q ss_pred CcccCCCEEcCCCEEEEEEecC-eeeeeecC--CCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 225 PICKEGDVIKEGQTIGYLDQFG-TELPVKSD--VAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEamK-~~~eV~Ap--~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
|.+++||.|..||+++.+.--. ..+-|-.| +.|+|+.+. .+|+. ...+.++.++.
T Consensus 53 p~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~~-~~g~~-~~~~~~~~~~~ 110 (369)
T cd01134 53 PLVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYIA-PAGDY-TVDDVILEVEF 110 (369)
T ss_pred eccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEEe-cCCCe-eEEEEEEEEEe
Confidence 4689999999999999887333 33344333 589988753 34551 22355555553
No 222
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=44.84 E-value=22 Score=33.76 Aligned_cols=50 Identities=22% Similarity=0.352 Sum_probs=35.2
Q ss_pred CCCEEcCCCEEEEEEecCeeeeeecCCCeEE-EEEecCCCCeecCCCeEEEEe
Q 023091 229 EGDVIKEGQTIGYLDQFGTELPVKSDVAGEV-LKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 229 vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~V-veilv~dGd~Ve~GqpL~~I~ 280 (287)
.|..|++||.++.++= .-...+--|.+ ++ ....+..|+.|..||.|..+.
T Consensus 236 ~~~~v~kGee~G~F~f-GStVvllfe~~-~~~~~~~v~~g~kV~~Ge~ig~~~ 286 (288)
T PRK00044 236 GAITLKKGAEMGRFKL-GSTVINLFPPG-KVQLAEQLQAGSVVRMGQPLAHIT 286 (288)
T ss_pred CCCeEccccEeecccC-CCeEEEEEeCC-CceeccccCCCCEEEcChhhcCcc
Confidence 3779999999999984 33344444443 32 234578999999999997653
No 223
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=43.73 E-value=29 Score=35.33 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=29.6
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCC-EEcCCCEEEEEEec
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGD-VIKEGQTIGYLDQF 245 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd-~Vk~GqvL~iIEam 245 (287)
..|.||..|++... ++++|+ .|+.|++||+|+..
T Consensus 46 ~ev~A~~~G~v~~i----------~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 46 MEVEAVDEGTLGKI----------LVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred eeecCCCceEEEEE----------EecCCCcEeCCCCEEEEEccC
Confidence 57999999999875 899995 79999999999753
No 224
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=42.78 E-value=17 Score=34.03 Aligned_cols=36 Identities=17% Similarity=0.034 Sum_probs=30.1
Q ss_pred CcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeee
Q 023091 207 PTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELP 250 (287)
Q Consensus 207 P~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~e 250 (287)
-|-|.+|- +.++|-+|..|++=|+.|.||.+|+..+
T Consensus 172 ~~~gl~wg--------asklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 172 EMDGLVWG--------ASKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred hhccceec--------cccccccccceeeEEEEEEEEcCccccc
Confidence 46777774 4579999999999999999999997654
No 225
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=42.15 E-value=44 Score=34.03 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=19.0
Q ss_pred EEecCCCCeecCCCeEEEEecCC
Q 023091 261 KLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 261 eilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
+++++-||.|+.|++|++|....
T Consensus 384 ~l~~k~G~~V~~Gd~l~~i~~~~ 406 (440)
T PRK05820 384 TLHARLGDRVDAGEPLATLHADD 406 (440)
T ss_pred EEccCCcCEECCCCeEEEEeCCC
Confidence 45678899999999999998443
No 226
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=41.98 E-value=49 Score=33.34 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=18.8
Q ss_pred EEecCCCCeecCCCeEEEEecCC
Q 023091 261 KLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 261 eilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
.++.+-||.|+.||||++|....
T Consensus 377 ~l~~k~G~~V~~g~~l~~i~~~~ 399 (405)
T TIGR02644 377 YLHKKTGDRVKKGDPLATLYSSD 399 (405)
T ss_pred EEecCCcCEeCCCCeEEEEeCCC
Confidence 34577899999999999998543
No 227
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=41.25 E-value=43 Score=34.11 Aligned_cols=38 Identities=34% Similarity=0.348 Sum_probs=29.6
Q ss_pred cCeeeeeecCCCeEEEE-------------------------------EecCCCCeecCCCeEEEEecC
Q 023091 245 FGTELPVKSDVAGEVLK-------------------------------LLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 245 mK~~~eV~Ap~sG~Vve-------------------------------ilv~dGd~Ve~GqpL~~I~p~ 282 (287)
-+...+|+|+.+|.|.+ ++++-||.|+.||+|++|...
T Consensus 336 a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~~ 404 (437)
T TIGR02643 336 APLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHAA 404 (437)
T ss_pred CCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEECC
Confidence 34456788888887764 456789999999999999854
No 228
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=40.24 E-value=59 Score=37.21 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=31.6
Q ss_pred CCCCcccCCCEEcCCCEEEEEEec-------CeeeeeecCCCeEEE
Q 023091 222 KQSPICKEGDVIKEGQTIGYLDQF-------GTELPVKSDVAGEVL 260 (287)
Q Consensus 222 ~~~p~V~vGd~Vk~GqvL~iIEam-------K~~~eV~Ap~sG~Vv 260 (287)
..-.||+.|+.|+.+|+|+.+-+. |....|.++.+|+|-
T Consensus 402 ~s~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~k~i~s~~~Ge~~ 447 (1227)
T TIGR02388 402 GSLLFVEDGQTVDAGQLLAEIALGAVRKSTEKATKDVASDLAGEVK 447 (1227)
T ss_pred CCEEEEECCCEEecCcEEEEeccCCcccceeEEEEEEecCCCceEE
Confidence 455689999999999999999874 344678899988664
No 229
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=38.10 E-value=30 Score=42.49 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=19.7
Q ss_pred CCCCCcccCCCEEcCCCEEEEEE
Q 023091 221 KKQSPICKEGDVIKEGQTIGYLD 243 (287)
Q Consensus 221 p~~~p~V~vGd~Vk~GqvL~iIE 243 (287)
+++-.+|+.||.|+.||+|+.|-
T Consensus 2612 ~~~~l~v~~g~~v~~gdilak~p 2634 (2890)
T PRK09603 2612 PKTSIAISDGSSVEQAEVLAKIP 2634 (2890)
T ss_pred CCcEEEecCCCEecccceEeecc
Confidence 46668899999999999999763
No 230
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=36.38 E-value=31 Score=35.40 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=26.2
Q ss_pred CCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091 255 VAGEVLKLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 255 ~sG~Vveilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
.-|.|+++.-++||.+..|+.|++|+...
T Consensus 51 eeGnIvsW~kKeGdkls~GDvl~EVETDK 79 (470)
T KOG0557|consen 51 EEGNIVSWKKKEGDKLSAGDVLLEVETDK 79 (470)
T ss_pred cCCceeeEeeccCCccCCCceEEEEeccc
Confidence 35889999999999999999999999754
No 231
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=36.23 E-value=34 Score=39.46 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=32.3
Q ss_pred CCCCCcccCCCEEcCCCEEEEEEecC--------eeeeeecCCCeEEE
Q 023091 221 KKQSPICKEGDVIKEGQTIGYLDQFG--------TELPVKSDVAGEVL 260 (287)
Q Consensus 221 p~~~p~V~vGd~Vk~GqvL~iIEamK--------~~~eV~Ap~sG~Vv 260 (287)
.+.-.+|+.||.|++||+|+.+.... ...+|.++.+|+|.
T Consensus 402 ~gs~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~ 449 (1364)
T CHL00117 402 PKSLLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMH 449 (1364)
T ss_pred CCCEEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEE
Confidence 35567899999999999999998632 33789999999853
No 232
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=35.30 E-value=28 Score=33.51 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=18.5
Q ss_pred CcccCCCEEcCCCEEEEEEe
Q 023091 225 PICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEa 244 (287)
|+++.||.|++||+|+.++.
T Consensus 68 ~~~~DG~~v~~g~~i~~~~G 87 (280)
T COG0157 68 WLVKDGDRVKPGDVLAEIEG 87 (280)
T ss_pred EEcCCCCEeCCCCEEEEEec
Confidence 58999999999999999984
No 233
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=35.12 E-value=69 Score=32.61 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=17.8
Q ss_pred EEecCCCCeecCCCeEEEEec
Q 023091 261 KLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 261 eilv~dGd~Ve~GqpL~~I~p 281 (287)
.++++-||.|+.||||++|..
T Consensus 379 ~l~~k~g~~V~~g~~l~~i~~ 399 (434)
T PRK06078 379 VLRKKVGDSVKKGESLATIYA 399 (434)
T ss_pred EeccCCcCEeCCCCeEEEEeC
Confidence 456788999999999999983
No 234
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=34.84 E-value=29 Score=35.38 Aligned_cols=22 Identities=14% Similarity=0.373 Sum_probs=19.2
Q ss_pred CCCcccCCCEEcCCCEEEEEEe
Q 023091 223 QSPICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 223 ~~p~V~vGd~Vk~GqvL~iIEa 244 (287)
...+++.||.|++||+|+.|-+
T Consensus 382 i~l~~k~Gd~V~~Gd~l~~i~~ 403 (437)
T TIGR02643 382 LTDLLPLGDRVEKGEPLAVVHA 403 (437)
T ss_pred eEeccCCcCEeCCCCeEEEEEC
Confidence 3567899999999999999974
No 235
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]
Probab=34.82 E-value=29 Score=31.13 Aligned_cols=20 Identities=50% Similarity=0.848 Sum_probs=18.1
Q ss_pred CCcccCCCEEcCCCEEEEEE
Q 023091 224 SPICKEGDVIKEGQTIGYLD 243 (287)
Q Consensus 224 ~p~V~vGd~Vk~GqvL~iIE 243 (287)
...|++||.|++||+|+.+-
T Consensus 215 ~~~V~~G~~V~~G~~Ig~~G 234 (277)
T COG0739 215 SILVKEGQKVKAGQVIGYVG 234 (277)
T ss_pred hhccCCCCEeccCCEEEEec
Confidence 57889999999999999984
No 236
>PRK06149 hypothetical protein; Provisional
Probab=34.18 E-value=56 Score=36.06 Aligned_cols=39 Identities=21% Similarity=0.481 Sum_probs=29.3
Q ss_pred eEEeCCcceEEEeccccCCCC---------------CCCcccCCCEEcCCCEEEEEEe
Q 023091 202 VLVFSPTVGSFRRNRTVKGKK---------------QSPICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~---------------~~p~V~vGd~Vk~GqvL~iIEa 244 (287)
..|.||+.|++.+.- .+ ....+++||.|++||.||.+-.
T Consensus 443 t~v~Ap~~G~v~~~~----~~~~~l~~~~~f~~l~g~~~~~~~g~~v~~G~~~~~~g~ 496 (972)
T PRK06149 443 TAVAAPFAGTVVRDG----QGHLTLRGDALELHLDGVEPAVEDGAAVRAGDPLGSVAG 496 (972)
T ss_pred CeEECccCcEEEEec----CCceEecCCCcEEEEecccccCCCCCeecCCchheecCC
Confidence 479999999988762 11 1223889999999999998864
No 237
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=33.83 E-value=83 Score=33.37 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=35.9
Q ss_pred cccCCCEEcCCCEEEEEEecC-eeeee--ecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 226 ICKEGDVIKEGQTIGYLDQFG-TELPV--KSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 226 ~V~vGd~Vk~GqvL~iIEamK-~~~eV--~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
.+++||.|..||+++.+.--. ..+-| ...+.|+|++| +.+|+ -...++++.++.
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~-ytv~~~i~~~~~ 179 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN-YTVDDTVLEVEF 179 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEee
Confidence 699999999999999765222 22223 23468999877 44565 233667777763
No 238
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=33.69 E-value=31 Score=35.14 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=20.2
Q ss_pred CCCCcccCCCEEcCCCEEEEEEec
Q 023091 222 KQSPICKEGDVIKEGQTIGYLDQF 245 (287)
Q Consensus 222 ~~~p~V~vGd~Vk~GqvL~iIEam 245 (287)
+...+++.||.|++||+||.|-+.
T Consensus 382 Gi~l~~k~G~~V~~Gd~l~~i~~~ 405 (440)
T PRK05820 382 GLTLHARLGDRVDAGEPLATLHAD 405 (440)
T ss_pred CeEEccCCcCEECCCCeEEEEeCC
Confidence 345688999999999999999743
No 239
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=32.21 E-value=64 Score=37.29 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=19.6
Q ss_pred CCCCCcccCCCEEcCCCEEEEE
Q 023091 221 KKQSPICKEGDVIKEGQTIGYL 242 (287)
Q Consensus 221 p~~~p~V~vGd~Vk~GqvL~iI 242 (287)
+++-.++.-||.|++||+|+.+
T Consensus 948 ~ga~~~~~~g~~v~~Gd~L~~l 969 (1331)
T PRK02597 948 PGAVLHVRDGDLVQRGDNLALL 969 (1331)
T ss_pred CCCEEEecCCCEecCCCeEEEE
Confidence 6788899999999999999965
No 240
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=32.00 E-value=34 Score=34.80 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=20.9
Q ss_pred CCCCcccCCCEEcCCCEEEEEEecC
Q 023091 222 KQSPICKEGDVIKEGQTIGYLDQFG 246 (287)
Q Consensus 222 ~~~p~V~vGd~Vk~GqvL~iIEamK 246 (287)
+...+++.||.|++||+||.|-+.+
T Consensus 377 Gi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 377 GIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred CeEeccCCcCEeCCCCeEEEEeCCh
Confidence 4456889999999999999997544
No 241
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=31.70 E-value=76 Score=39.33 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=17.1
Q ss_pred EecCCCCeecCCCeEEEEec
Q 023091 262 LLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 262 ilv~dGd~Ve~GqpL~~I~p 281 (287)
+.|++|+.|..|+.|+++-.
T Consensus 2616 l~v~~g~~v~~gdilak~p~ 2635 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKIPK 2635 (2890)
T ss_pred EEecCCCEecccceEeeccc
Confidence 56889999999999999864
No 242
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=31.25 E-value=32 Score=35.53 Aligned_cols=45 Identities=20% Similarity=0.147 Sum_probs=32.0
Q ss_pred ceEEeCCcceEEEeccc------------c--CCCCCCCcccCCCEEcCCCEEEEEEec
Q 023091 201 YVLVFSPTVGSFRRNRT------------V--KGKKQSPICKEGDVIKEGQTIGYLDQF 245 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~ps------------p--~~p~~~p~V~vGd~Vk~GqvL~iIEam 245 (287)
.+.|+||..|.+...-. | ++-+...+++.||.|++||+|+.|-+.
T Consensus 413 ~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 413 TADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAE 471 (493)
T ss_pred EEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECC
Confidence 45778888887764311 1 123456789999999999999998754
No 243
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=31.09 E-value=92 Score=30.85 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=48.4
Q ss_pred ceEEeCCcceEEEecccc--------------CCCCCCCcccCCCEEcCCCEEEEEEecCeeee-eecCCCeEEEEEecC
Q 023091 201 YVLVFSPTVGSFRRNRTV--------------KGKKQSPICKEGDVIKEGQTIGYLDQFGTELP-VKSDVAGEVLKLLFD 265 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp--------------~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~e-V~Ap~sG~Vveilv~ 265 (287)
.+.|-|-+||.+...-.+ .+....+.-..+..|++||.++.-+=.-+..- .+++. . .+..++
T Consensus 248 ~v~VGA~~VGsI~~~~~~~l~tn~~~~~~~~~~~~~~~~~y~~~~~v~KGeElG~F~~GSTVVllFe~~~--~-~~~~l~ 324 (353)
T PTZ00403 248 YAAISAYNVGNIKIINDEELVTNNLRTQLSYMGGDINTKIYDSYKSVEVGDEVGEFRMGSSIVVIFENKK--N-FSWNVK 324 (353)
T ss_pred EEEEeeEEEEEEEEEeccccccccccccccccCCcceeeecCCCCcccccceeeEeccCCeEEEEEeCCC--c-CCcccC
Confidence 467889999988632100 00001122233568999999998875333222 22332 1 355678
Q ss_pred CCCeecCCCeEEEEecC
Q 023091 266 DGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 266 dGd~Ve~GqpL~~I~p~ 282 (287)
.|+.|.+||.|..+.+.
T Consensus 325 ~g~~Vr~Gq~lg~~~~~ 341 (353)
T PTZ00403 325 PNQTVSVGQRLGGVGEP 341 (353)
T ss_pred CCCEEEeeeeccccCCC
Confidence 99999999999988743
No 244
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=31.02 E-value=94 Score=32.86 Aligned_cols=54 Identities=30% Similarity=0.524 Sum_probs=34.4
Q ss_pred CcccCCCEEcCCCEEEEEEe-cCeeeee--ecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 225 PICKEGDVIKEGQTIGYLDQ-FGTELPV--KSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEa-mK~~~eV--~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
|.+++||.|..||+++.+.- .-+.+.| ...+.|+|+.|. .+|+. ...+++++++
T Consensus 119 p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i~-~~g~~-~~~~~v~~~~ 175 (578)
T TIGR01043 119 PTVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEIA-EEGDY-TVEDTIAVVD 175 (578)
T ss_pred cccccCccccCCceEEEEecccceeeeeecCCCCcceEEEec-cCCCc-eeeeeEEEEe
Confidence 46999999999999998753 2233333 234689988773 34542 2245555554
No 245
>PRK04350 thymidine phosphorylase; Provisional
Probab=30.82 E-value=34 Score=35.35 Aligned_cols=45 Identities=22% Similarity=0.172 Sum_probs=33.1
Q ss_pred ceEEeCCcceEEEeccc------------c--CCCCCCCcccCCCEEcCCCEEEEEEec
Q 023091 201 YVLVFSPTVGSFRRNRT------------V--KGKKQSPICKEGDVIKEGQTIGYLDQF 245 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~ps------------p--~~p~~~p~V~vGd~Vk~GqvL~iIEam 245 (287)
...|+||..|.+..... | ++-+...+++.||.|++||+|+.|-+.
T Consensus 405 ~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~ 463 (490)
T PRK04350 405 THDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAE 463 (490)
T ss_pred EEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecC
Confidence 46788998888765311 1 123456789999999999999999754
No 246
>PRK10718 RpoE-regulated lipoprotein; Provisional
Probab=30.78 E-value=81 Score=28.83 Aligned_cols=43 Identities=14% Similarity=0.299 Sum_probs=35.1
Q ss_pred ccCCCEEcCCCEEEEEEecCe---eeeeecCCCeEEEEEecCCCCee
Q 023091 227 CKEGDVIKEGQTIGYLDQFGT---ELPVKSDVAGEVLKLLFDDGDAV 270 (287)
Q Consensus 227 V~vGd~Vk~GqvL~iIEamK~---~~eV~Ap~sG~Vveilv~dGd~V 270 (287)
+..|.....|+++-+.|+||- ...|.-+ .|+|.+|.|.|++..
T Consensus 70 lrsGm~t~~G~iv~~~qa~~~d~v~lvi~G~-~G~V~rI~V~d~~i~ 115 (191)
T PRK10718 70 LRSGMKTANGNVVRFFQAMKGDQVAMVINGQ-QGTVSRIDVLDSDIP 115 (191)
T ss_pred EeccccCCCCCEEEeeeeecCCceEEEEECC-CCcEEEEEEeCCCCC
Confidence 467888889999999999884 3456666 889999999999875
No 247
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=29.09 E-value=40 Score=33.94 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=20.2
Q ss_pred CCCCcccCCCEEcCCCEEEEEEec
Q 023091 222 KQSPICKEGDVIKEGQTIGYLDQF 245 (287)
Q Consensus 222 ~~~p~V~vGd~Vk~GqvL~iIEam 245 (287)
+...+++.||.|++||+||.|-+.
T Consensus 375 Gi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 375 GIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CeEEecCCcCEeCCCCeEEEEeCC
Confidence 345688999999999999998753
No 248
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=28.96 E-value=39 Score=34.99 Aligned_cols=45 Identities=20% Similarity=0.165 Sum_probs=31.0
Q ss_pred ceEEeCCcceEEEeccc------------c--CCCCCCCcccCCCEEcCCCEEEEEEec
Q 023091 201 YVLVFSPTVGSFRRNRT------------V--KGKKQSPICKEGDVIKEGQTIGYLDQF 245 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~ps------------p--~~p~~~p~V~vGd~Vk~GqvL~iIEam 245 (287)
.+.|+||..|.+..... | ++-+...+++.||.|++||+|+.|-+.
T Consensus 414 ~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~ 472 (500)
T TIGR03327 414 TYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAE 472 (500)
T ss_pred EEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECC
Confidence 35677777776654210 0 123456789999999999999999744
No 249
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=27.15 E-value=50 Score=31.12 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=21.8
Q ss_pred CeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 256 AGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 256 sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
+|.-+++.+.||+.|+.|++|++++..
T Consensus 56 ~~l~v~~~~~dG~~v~~g~~i~~i~G~ 82 (268)
T cd01572 56 PGIEVEWLVKDGDRVEPGQVLATVEGP 82 (268)
T ss_pred CCeEEEEEeCCCCEecCCCEEEEEEEC
Confidence 566677888899999999999988754
No 250
>PRK13380 glycine cleavage system protein H; Provisional
Probab=26.60 E-value=75 Score=27.40 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=28.9
Q ss_pred eeeecCCCeEEEEEecC-CCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFD-DGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~-dGd~Ve~GqpL~~I~p~ 282 (287)
.+.-...-|.|..+.+. .|+.|+.|++|+.|+..
T Consensus 36 td~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~ 70 (144)
T PRK13380 36 TDYAQTMAGDVVFVRLKELGKKVEKGKPVATLESG 70 (144)
T ss_pred CHHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEEc
Confidence 55666788999999987 79999999999999854
No 251
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=26.06 E-value=30 Score=29.31 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=12.7
Q ss_pred CCCCCcccCCCEEcCCCEEE
Q 023091 221 KKQSPICKEGDVIKEGQTIG 240 (287)
Q Consensus 221 p~~~p~V~vGd~Vk~GqvL~ 240 (287)
++.+..|++||.|+.||.|-
T Consensus 42 ~GpeLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 42 AGPELIVSEGQSVKADQPLT 61 (118)
T ss_dssp SSS-BS--TT-EETTT-BSB
T ss_pred CCCeEEEcCCCEEecCCccc
Confidence 57788999999999999863
No 252
>PF01848 HOK_GEF: Hok/gef family; InterPro: IPR000021 The hok/gef family of Gram-negative bacterial proteins are toxic to cells when over-expressed, killing the cells from within by interfering with a vital function in the cell membrane []. Some family members (flm) increase the stability of unstable RNA [], some (pnd) induce the degradation of stable RNA at higher than optimum growth temperatures [], while others affect the release of cellular magnesium by membrane alterations []. The proteins are short (50-70 residues), consisting of an N-terminal hydrophobic (possibly membrane spanning) domain, and a C-terminal periplasmic region, which contains the toxic domain. The C-terminal region contains a conserved cysteine residue that mediates homo-dimerisation in the gef protein, although dimerisation is not necessary for the toxic effect [].; GO: 0016020 membrane
Probab=25.85 E-value=1.8e+02 Score=20.39 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCccEEEEEeCCEEEEE
Q 023091 98 FEALMLEVCDETEIAELKLKVGDFEMHL 125 (287)
Q Consensus 98 i~~LLie~~d~S~l~Elel~~~d~~L~L 125 (287)
|.-|+.-+|-+.++-||.++.|+.++..
T Consensus 12 iTvl~~~~l~r~sLCEl~i~~g~~evaA 39 (43)
T PF01848_consen 12 ITVLIFTWLTRDSLCELRIKDGNTEVAA 39 (43)
T ss_pred HHHHHHHHHhccCcEEEEEecCCEEEEE
Confidence 3456677899999999999999998864
No 253
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=25.48 E-value=43 Score=29.83 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=17.0
Q ss_pred CCCcccCCCEEcCCCEEEE
Q 023091 223 QSPICKEGDVIKEGQTIGY 241 (287)
Q Consensus 223 ~~p~V~vGd~Vk~GqvL~i 241 (287)
..+.+++|++|+.||.|++
T Consensus 184 ~~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 184 FEWSVKPGQKVRAGETIGY 202 (202)
T ss_pred cccccCCCCEEEeeeEEeC
Confidence 3789999999999999973
No 254
>PRK11649 putative peptidase; Provisional
Probab=24.11 E-value=81 Score=31.92 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=17.2
Q ss_pred CCcccCCCEEcCCCEEEEEE
Q 023091 224 SPICKEGDVIKEGQTIGYLD 243 (287)
Q Consensus 224 ~p~V~vGd~Vk~GqvL~iIE 243 (287)
...|+.||.|++||+|+.+-
T Consensus 364 ~~~v~~Gq~V~~Gq~IG~vG 383 (439)
T PRK11649 364 KLLVKPGQKVKRGDRIALSG 383 (439)
T ss_pred cccCCCcCEECCCCeEEEEc
Confidence 34589999999999999875
No 255
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=23.65 E-value=1e+02 Score=25.42 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=23.3
Q ss_pred CCCeEEEEEec-CCCCeecCCCeEEEEecCC
Q 023091 254 DVAGEVLKLLF-DDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 254 p~sG~Vveilv-~dGd~Ve~GqpL~~I~p~~ 283 (287)
..-|.|+.+.. +.|+.|..|++|+.|+..+
T Consensus 27 ~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K 57 (110)
T TIGR03077 27 ENLGNILHIDLPSVGSSCKEGEVLVILESSK 57 (110)
T ss_pred HhcCCEEEEECCCCCCEEcCCCEEEEEEecc
Confidence 45577777765 5599999999999998653
No 256
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=23.61 E-value=1.5e+02 Score=36.82 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=54.6
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEE-----------ecCee------------eeeecCCCe
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLD-----------QFGTE------------LPVKSDVAG 257 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIE-----------amK~~------------~eV~Ap~sG 257 (287)
.+.|+||+.-.-.++== ..==-|...-|..|.-|+.|++|- +|.++ ..|+|+.+|
T Consensus 2300 ~v~IRS~ltC~s~~gvC--~~CYG~~La~~~~V~iGeaVGiIAAQSIGEPGTQLTMRTFHtGGvas~~~~~~~i~~~~~G 2377 (2836)
T PRK14844 2300 VVKIRSPLTCEISPGVC--SLCYGRDLATGKIVSIGEAVGVIAAQSVGEPGTQLTMRTFHIGGVMTRGVESSNIIASINA 2377 (2836)
T ss_pred EEEEcCCeeECCCCCCh--hhccCccccCCCcccccccceeeeecccCCCcceeeeeheeeccccccccccceeEeccCc
Confidence 47899997654322100 000123456888899999999886 34333 237788888
Q ss_pred EEE------------------------------------------EEecCCCCeecCCCeEEEEecCC
Q 023091 258 EVL------------------------------------------KLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 258 ~Vv------------------------------------------eilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
+|. .++|+||+.|+.||.|+...|-.
T Consensus 2378 ~v~~~~~~~v~~~~g~~iv~sr~~~~~i~d~~g~~~~~~~i~yga~l~v~~g~~V~~g~~la~wdp~~ 2445 (2836)
T PRK14844 2378 KIKLNNSNIIIDKNGNKIVISRSCEVVLIDSLGSEKLKHSVPYGAKLYVDEGGSVKIGDKVAEWDPYT 2445 (2836)
T ss_pred eEEeccceeEEcCCCcEEEEecccEEEEEecCCcEEEEEecccccEEEecCCCEecCCCEEEEEcCCC
Confidence 664 35789999999999999987743
No 257
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=22.78 E-value=64 Score=30.39 Aligned_cols=20 Identities=25% Similarity=0.518 Sum_probs=18.3
Q ss_pred CcccCCCEEcCCCEEEEEEe
Q 023091 225 PICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEa 244 (287)
|+++.|+.|++||+|+.++.
T Consensus 62 ~~~~dG~~v~~g~~i~~i~G 81 (268)
T cd01572 62 WLVKDGDRVEPGQVLATVEG 81 (268)
T ss_pred EEeCCCCEecCCCEEEEEEE
Confidence 58999999999999999983
No 258
>PF06572 DUF1131: Protein of unknown function (DUF1131); InterPro: IPR010938 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2QZB_B.
Probab=22.63 E-value=75 Score=28.55 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=29.3
Q ss_pred cCCCEEcCCCEEEEEEecC---eeeeeecCCCeEEEEEecCCCCee
Q 023091 228 KEGDVIKEGQTIGYLDQFG---TELPVKSDVAGEVLKLLFDDGDAV 270 (287)
Q Consensus 228 ~vGd~Vk~GqvL~iIEamK---~~~eV~Ap~sG~Vveilv~dGd~V 270 (287)
..|.+-..|+++-++|+|| +..+|.-+-.|+|.+|.|.+.+..
T Consensus 50 rsGm~t~nG~~v~~~qA~~~d~v~lvI~G~~~G~V~rI~V~d~~i~ 95 (171)
T PF06572_consen 50 RSGMQTANGNIVSFFQAMKDDQVKLVISGDPKGTVSRIEVMDPDIK 95 (171)
T ss_dssp EEEEEEETTEEEEEEEEEETTEEEEEEEE----BEEEEEE--TTS-
T ss_pred ecceecCCCCeEEeeeeecCCeEEEEEecCCCCcEEEEEEeccccC
Confidence 4567788899999999988 445677777899999999998875
No 259
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=22.15 E-value=4.1e+02 Score=23.49 Aligned_cols=79 Identities=10% Similarity=0.141 Sum_probs=38.4
Q ss_pred CceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC--e-eeeeecCCCeEEEEEecCCCCeecCCCeE
Q 023091 200 GYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG--T-ELPVKSDVAGEVLKLLFDDGDAVGFGDPL 276 (287)
Q Consensus 200 ~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK--~-~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL 276 (287)
+++.+.+|+.|++....--+|.--+.+. .+...+--..++.+|+.. + +..|-+-..+.|. ..++.|+.+..|+-+
T Consensus 71 DyHr~haP~~G~v~~~~~~~G~~~~~~~-~~~~~~NeR~~~~~~t~~G~v~~v~v~~~~~~~i~-~~~~~g~~v~kGeei 148 (189)
T TIGR00164 71 DVHVNRAPAGGKVTYVKHIDGSFVPAFL-RKASTENERNAVLIKTASGEVGVVQIAGFVARRIV-CYVKEGEKVSRGQRI 148 (189)
T ss_pred ccceEEcccccEEEEEEEECCeEeeccc-CcccccceeEEEEEEcCCCCEEEEEECeEEccEEE-EecCCCCEEecCcEE
Confidence 5678899999997764221111111111 111112223346666542 1 1223222222222 245678888888877
Q ss_pred EEEe
Q 023091 277 IAVL 280 (287)
Q Consensus 277 ~~I~ 280 (287)
-.++
T Consensus 149 G~f~ 152 (189)
T TIGR00164 149 GMIR 152 (189)
T ss_pred EEEe
Confidence 6554
No 260
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.70 E-value=99 Score=29.40 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=21.7
Q ss_pred eEEEEEecCCCCeecCCCeEEEEecC
Q 023091 257 GEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 257 G~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
|.-.++++.||+.|+.|++|++++..
T Consensus 57 ~~~~~~~~~dG~~v~~g~~i~~i~G~ 82 (273)
T PRK05848 57 GIECVFTIKDGERFKKGDILMEIEGD 82 (273)
T ss_pred CCEEEEEcCCCCEecCCCEEEEEEEC
Confidence 44468899999999999999999754
No 261
>PRK09738 small toxic polypeptide; Provisional
Probab=21.21 E-value=2.4e+02 Score=20.67 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCccEEEEEeCCEEEEEE
Q 023091 98 FEALMLEVCDETEIAELKLKVGDFEMHLK 126 (287)
Q Consensus 98 i~~LLie~~d~S~l~Elel~~~d~~L~L~ 126 (287)
|.-|+.-++-+.++-||.+++|+.++...
T Consensus 17 iTvL~f~~l~r~sLCEl~i~~g~~evaA~ 45 (52)
T PRK09738 17 LTLLIFTYLTRKSLCELRYRDGDREVAAF 45 (52)
T ss_pred HHHHHHHHHccCCceEEEEecCCEEEEEE
Confidence 34566778999999999999999998764
No 262
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.96 E-value=72 Score=30.36 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.7
Q ss_pred CCcccCCCEEcCCCEEEEEEe
Q 023091 224 SPICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 224 ~p~V~vGd~Vk~GqvL~iIEa 244 (287)
.|+++.|+.|++||+|+.++.
T Consensus 67 ~~~~~dG~~v~~g~~i~~~~G 87 (277)
T PRK08072 67 ELHKKDGDLVKKGEIIATVQG 87 (277)
T ss_pred EEEeCCCCEEcCCCEEEEEEE
Confidence 368999999999999999983
No 263
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=20.76 E-value=2.2e+02 Score=21.58 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=34.6
Q ss_pred cceEEEeccccCCCCCCCcccCCCEEcC--CCEEEEEEecCee-eeeecCCCeEEEEEecCCCCeecCCCeEE
Q 023091 208 TVGSFRRNRTVKGKKQSPICKEGDVIKE--GQTIGYLDQFGTE-LPVKSDVAGEVLKLLFDDGDAVGFGDPLI 277 (287)
Q Consensus 208 ~vGtf~~~psp~~p~~~p~V~vGd~Vk~--GqvL~iIEamK~~-~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~ 277 (287)
..|++... .+++||+|.- ....+.|..+.+. .++..=.+|.-+.+.+.+.+.|..|+.|.
T Consensus 18 v~Gkv~~G----------~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~~~~i~~G~vl~ 80 (81)
T cd03695 18 YAGTIASG----------SIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLEDEIDVSRGDVIV 80 (81)
T ss_pred EEEEEccc----------eEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEECCccccCCCCEEe
Confidence 56666554 5677777632 2223333333322 23444466777777777767788888775
No 264
>PLN02938 phosphatidylserine decarboxylase
Probab=20.49 E-value=1.7e+02 Score=29.81 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=35.7
Q ss_pred CCCEEcCCCEEEEEEecCee-eeeecCCC--------e---EEEEEecCCCCeecCCCeEEEEec
Q 023091 229 EGDVIKEGQTIGYLDQFGTE-LPVKSDVA--------G---EVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 229 vGd~Vk~GqvL~iIEamK~~-~eV~Ap~s--------G---~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
.|..+++||.++.-+=.-+. .-.++|.. | .--+..++.|+.|.+||.|..+.+
T Consensus 363 ~g~~l~KGeE~G~F~lGSTVVLvFEap~~~~~~~~~~~~~~~~~~~~l~~G~~Vk~Gq~LG~~~~ 427 (428)
T PLN02938 363 CGLCLKKGDEVAVFNLGSTVVLVFEAPVEVEPLFKVLDQSSSDFRFCVRKGDRIRVGQALGRWME 427 (428)
T ss_pred CCceeccccEeeeecCCCeEEEEEeCCcccccccccccccccCccccccCCCEEEcchhhccccc
Confidence 37899999999987733222 23445531 1 123567899999999999987643
No 265
>PRK09759 small toxic polypeptide; Provisional
Probab=20.47 E-value=2.6e+02 Score=20.28 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCccEEEEEeCCEEEEEE
Q 023091 98 FEALMLEVCDETEIAELKLKVGDFEMHLK 126 (287)
Q Consensus 98 i~~LLie~~d~S~l~Elel~~~d~~L~L~ 126 (287)
|.-|+.-+|-+.++-||.++.|+.++...
T Consensus 15 iTvL~f~~l~r~sLCEl~i~~g~~evaA~ 43 (50)
T PRK09759 15 FTLLFFTWMIRDSLCELHIKQGSYELAAF 43 (50)
T ss_pred HHHHHHHHHhCCCceEEEEecCCEEEEEE
Confidence 34566778999999999999999988654
No 266
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=20.42 E-value=1.2e+02 Score=28.72 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=21.5
Q ss_pred eEEEEEecCCCCeecCCCeEEEEecC
Q 023091 257 GEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 257 G~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
|.-+++++.||+.|..|++|++++..
T Consensus 55 ~~~v~~~~~dG~~v~~g~~i~~i~G~ 80 (272)
T cd01573 55 GLEVDLAAASGSRVAAGAVLLEAEGP 80 (272)
T ss_pred CcEEEEEcCCCCEecCCCEEEEEEEc
Confidence 35567789999999999999999753
No 267
>PRK00624 glycine cleavage system protein H; Provisional
Probab=20.02 E-value=1.3e+02 Score=24.93 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=23.7
Q ss_pred cCCCeEEEEEec-CCCCeecCCCeEEEEecCC
Q 023091 253 SDVAGEVLKLLF-DDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 253 Ap~sG~Vveilv-~dGd~Ve~GqpL~~I~p~~ 283 (287)
...-|.|+-+.. +.|+.|..|++|+.|+..+
T Consensus 28 ~~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K 59 (114)
T PRK00624 28 QENLGNILHIDLPSVGSFCKEGEVLVILESSK 59 (114)
T ss_pred HHhcCCEEEEECCCCCCEEeCCCEEEEEEecc
Confidence 345677777765 5599999999999998653
Done!