Query 023091
Match_columns 287
No_of_seqs 264 out of 2017
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 16:12:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bdo_A Acetyl-COA carboxylase; 99.7 3.3E-16 1.1E-20 117.9 11.5 76 202-280 5-80 (80)
2 2kcc_A Acetyl-COA carboxylase 99.6 5.8E-15 2E-19 113.1 8.4 72 202-284 6-77 (84)
3 3crk_C Dihydrolipoyllysine-res 99.6 2E-14 6.8E-19 110.5 10.0 68 208-285 18-86 (87)
4 1z6h_A Biotin/lipoyl attachmen 99.5 3.3E-14 1.1E-18 104.1 10.2 69 204-282 2-70 (72)
5 2dn8_A Acetyl-COA carboxylase 99.5 6.5E-14 2.2E-18 110.3 10.8 71 202-283 18-88 (100)
6 2dnc_A Pyruvate dehydrogenase 99.5 8.7E-14 3E-18 110.0 10.4 81 202-286 8-89 (98)
7 2d5d_A Methylmalonyl-COA decar 99.5 1.5E-13 5E-18 100.8 10.6 69 202-280 6-74 (74)
8 1ghj_A E2, E2, the dihydrolipo 99.5 1E-13 3.4E-18 104.2 9.3 66 207-282 13-78 (79)
9 1dcz_A Transcarboxylase 1.3S s 99.5 1.7E-13 6E-18 101.7 10.5 70 201-280 8-77 (77)
10 1k8m_A E2 component of branche 99.5 1.2E-13 4.2E-18 107.9 9.0 66 208-283 17-82 (93)
11 3va7_A KLLA0E08119P; carboxyla 99.5 1.4E-13 4.8E-18 148.7 11.9 71 199-279 1165-1235(1236)
12 3n6r_A Propionyl-COA carboxyla 99.5 1.4E-13 4.6E-18 140.6 10.8 70 201-280 612-681 (681)
13 1y8o_B Dihydrolipoyllysine-res 99.5 2.5E-13 8.6E-18 113.0 10.2 72 202-283 28-106 (128)
14 2l5t_A Lipoamide acyltransfera 99.5 1.8E-13 6.2E-18 102.1 8.1 65 206-280 12-76 (77)
15 2dne_A Dihydrolipoyllysine-res 99.4 2.6E-13 8.9E-18 109.2 8.9 58 225-282 27-85 (108)
16 1iyu_A E2P, dihydrolipoamide a 99.4 7E-13 2.4E-17 99.5 9.8 61 223-283 16-76 (79)
17 2ejm_A Methylcrotonoyl-COA car 99.4 5.8E-13 2E-17 104.8 8.7 73 202-284 15-87 (99)
18 1qjo_A Dihydrolipoamide acetyl 99.4 7.5E-13 2.6E-17 99.2 8.7 59 225-283 20-78 (80)
19 2k7v_A Dihydrolipoyllysine-res 99.4 4E-14 1.4E-18 108.2 1.7 70 203-282 4-73 (85)
20 3hbl_A Pyruvate carboxylase; T 99.4 7.7E-13 2.6E-17 142.1 10.5 71 202-282 1078-1148(1150)
21 1gjx_A Pyruvate dehydrogenase; 99.4 1.8E-13 6.1E-18 103.0 4.0 69 205-283 11-79 (81)
22 2jku_A Propionyl-COA carboxyla 99.4 8E-14 2.7E-18 109.0 2.0 69 202-280 26-94 (94)
23 1zko_A Glycine cleavage system 99.4 1.9E-13 6.6E-18 114.9 3.1 56 228-283 54-116 (136)
24 3u9t_A MCC alpha, methylcroton 99.3 1.2E-13 4.2E-18 140.8 0.0 71 202-282 603-673 (675)
25 1pmr_A Dihydrolipoyl succinylt 99.3 1E-13 3.4E-18 104.7 -0.6 59 223-281 20-78 (80)
26 2qf7_A Pyruvate carboxylase pr 99.1 3E-11 1E-15 130.0 6.5 69 202-280 1096-1164(1165)
27 3bg3_A Pyruvate carboxylase, m 99.1 1.5E-11 5.2E-16 126.8 3.6 69 202-280 650-718 (718)
28 3dva_I Dihydrolipoyllysine-res 99.1 5.7E-12 2E-16 122.8 0.0 77 203-283 4-80 (428)
29 1zy8_K Pyruvate dehydrogenase 99.1 1.2E-11 4E-16 111.8 0.0 75 203-281 5-80 (229)
30 2k32_A A; NMR {Campylobacter j 99.0 6.7E-10 2.3E-14 88.5 7.8 72 202-283 2-103 (116)
31 1hpc_A H protein of the glycin 99.0 2.3E-10 7.8E-15 95.5 5.1 70 205-283 31-107 (131)
32 3a7l_A H-protein, glycine clea 99.0 4.5E-10 1.6E-14 93.3 6.7 71 205-284 32-109 (128)
33 1onl_A Glycine cleavage system 99.0 3.8E-10 1.3E-14 93.8 5.5 58 227-284 44-108 (128)
34 3klr_A Glycine cleavage system 98.6 6.3E-08 2.2E-12 80.4 6.7 57 228-284 41-104 (125)
35 3mxu_A Glycine cleavage system 98.5 2.8E-07 9.7E-12 78.1 7.0 57 228-284 63-126 (143)
36 3tzu_A GCVH, glycine cleavage 98.4 2.3E-07 7.8E-12 78.1 4.1 55 228-282 58-119 (137)
37 3lnn_A Membrane fusion protein 98.3 2.2E-06 7.6E-11 79.1 9.0 73 200-282 56-205 (359)
38 3ne5_B Cation efflux system pr 98.2 4E-06 1.4E-10 80.2 8.9 71 201-281 121-240 (413)
39 2f1m_A Acriflavine resistance 98.2 1.1E-06 3.8E-11 78.5 4.4 72 201-282 22-166 (277)
40 3hgb_A Glycine cleavage system 98.2 2.7E-06 9.1E-11 73.1 6.2 56 228-283 68-130 (155)
41 3fpp_A Macrolide-specific effl 98.1 4.7E-06 1.6E-10 76.4 7.6 71 201-281 31-189 (341)
42 1vf7_A Multidrug resistance pr 98.0 6.5E-06 2.2E-10 77.2 5.6 72 201-282 43-173 (369)
43 3na6_A Succinylglutamate desuc 97.9 6E-05 2E-09 70.7 10.0 68 201-281 257-328 (331)
44 3cdx_A Succinylglutamatedesucc 97.7 0.00019 6.4E-09 67.7 10.3 68 201-281 267-338 (354)
45 3fmc_A Putative succinylglutam 97.7 0.00015 5E-09 69.2 9.5 69 200-281 289-363 (368)
46 2dn8_A Acetyl-COA carboxylase 97.6 2.6E-05 8.9E-10 60.8 3.0 46 236-281 5-50 (100)
47 4dk0_A Putative MACA; alpha-ha 97.5 6.9E-06 2.4E-10 76.0 -2.2 69 202-280 33-189 (369)
48 1f3z_A EIIA-GLC, glucose-speci 97.3 0.0004 1.4E-08 59.7 7.2 65 202-280 13-116 (161)
49 2gpr_A Glucose-permease IIA co 97.3 0.00045 1.6E-08 58.9 7.0 65 202-280 8-111 (154)
50 1ax3_A Iiaglc, glucose permeas 97.0 0.00041 1.4E-08 59.6 4.1 64 203-280 14-116 (162)
51 1z6h_A Biotin/lipoyl attachmen 97.0 0.00091 3.1E-08 48.0 5.0 33 250-282 1-33 (72)
52 2d5d_A Methylmalonyl-COA decar 96.9 0.0015 5E-08 47.0 5.2 34 249-282 6-39 (74)
53 2qj8_A MLR6093 protein; struct 96.9 0.0045 1.5E-07 57.5 9.8 67 202-281 258-328 (332)
54 1dcz_A Transcarboxylase 1.3S s 96.8 0.0018 6E-08 47.2 4.9 34 249-282 9-42 (77)
55 2k32_A A; NMR {Campylobacter j 96.6 0.0025 8.5E-08 50.1 5.1 34 249-282 2-35 (116)
56 2kcc_A Acetyl-COA carboxylase 96.6 0.0017 5.6E-08 49.0 3.6 34 249-282 6-39 (84)
57 2f1m_A Acriflavine resistance 96.3 0.005 1.7E-07 54.6 5.6 52 229-281 4-55 (277)
58 2ejm_A Methylcrotonoyl-COA car 96.0 0.0054 1.8E-07 47.5 4.1 35 248-282 14-48 (99)
59 2jku_A Propionyl-COA carboxyla 95.9 0.0048 1.6E-07 47.5 3.3 34 249-282 26-59 (94)
60 2xha_A NUSG, transcription ant 95.8 0.011 3.9E-07 52.2 5.6 51 221-277 19-98 (193)
61 1bdo_A Acetyl-COA carboxylase; 95.8 0.0071 2.4E-07 44.5 3.6 34 249-282 5-45 (80)
62 3fpp_A Macrolide-specific effl 95.7 0.011 3.8E-07 53.8 5.5 45 237-282 21-65 (341)
63 3lnn_A Membrane fusion protein 95.6 0.014 4.9E-07 53.5 5.9 46 237-282 45-91 (359)
64 2l5t_A Lipoamide acyltransfera 95.3 0.01 3.4E-07 43.4 2.9 30 253-282 12-41 (77)
65 1vf7_A Multidrug resistance pr 95.0 0.014 4.9E-07 54.4 3.7 43 238-281 34-76 (369)
66 3crk_C Dihydrolipoyllysine-res 95.0 0.038 1.3E-06 41.5 5.4 28 255-282 18-45 (87)
67 3our_B EIIA, phosphotransferas 95.0 0.063 2.2E-06 47.0 7.4 65 202-280 35-138 (183)
68 2dne_A Dihydrolipoyllysine-res 94.9 0.028 9.6E-07 44.6 4.6 37 246-282 5-47 (108)
69 1k8m_A E2 component of branche 94.9 0.035 1.2E-06 42.6 5.0 28 255-282 17-44 (93)
70 1qjo_A Dihydrolipoamide acetyl 94.8 0.031 1.1E-06 40.9 4.5 34 201-244 43-76 (80)
71 2xhc_A Transcription antitermi 94.8 0.031 1.1E-06 53.3 5.4 51 221-277 59-138 (352)
72 1ghj_A E2, E2, the dihydrolipo 94.5 0.022 7.7E-07 41.7 2.9 30 253-282 12-41 (79)
73 4dk0_A Putative MACA; alpha-ha 94.4 0.012 4.2E-07 54.0 1.6 54 227-281 12-65 (369)
74 2k7v_A Dihydrolipoyllysine-res 94.4 0.0034 1.2E-07 47.1 -1.8 34 249-282 3-36 (85)
75 1gjx_A Pyruvate dehydrogenase; 94.4 0.03 1E-06 41.2 3.4 33 250-282 9-41 (81)
76 2gpr_A Glucose-permease IIA co 94.4 0.05 1.7E-06 46.2 5.2 76 202-280 45-154 (154)
77 3ne5_B Cation efflux system pr 94.3 0.046 1.6E-06 52.0 5.3 46 237-282 109-156 (413)
78 2dnc_A Pyruvate dehydrogenase 94.2 0.047 1.6E-06 42.4 4.4 28 255-282 20-47 (98)
79 1iyu_A E2P, dihydrolipoamide a 94.1 0.071 2.4E-06 39.0 5.1 34 201-244 41-74 (79)
80 1y8o_B Dihydrolipoyllysine-res 93.7 0.088 3E-06 43.3 5.3 28 255-282 40-67 (128)
81 2xha_A NUSG, transcription ant 93.1 0.041 1.4E-06 48.6 2.4 52 221-278 77-158 (193)
82 3d4r_A Domain of unknown funct 93.0 0.12 4.1E-06 44.7 5.2 40 226-265 115-155 (169)
83 1pmr_A Dihydrolipoyl succinylt 92.4 0.028 9.6E-07 41.4 0.4 29 254-282 14-42 (80)
84 3n6r_A Propionyl-COA carboxyla 92.1 0.14 4.9E-06 52.2 5.3 35 248-282 612-646 (681)
85 2auk_A DNA-directed RNA polyme 91.9 0.24 8.2E-06 43.1 5.8 48 221-270 60-107 (190)
86 2bco_A Succinylglutamate desuc 90.7 0.29 9.9E-06 45.9 5.5 64 202-280 264-327 (350)
87 1f3z_A EIIA-GLC, glucose-speci 89.3 0.68 2.3E-05 39.5 6.2 42 202-243 50-116 (161)
88 3bg3_A Pyruvate carboxylase, m 89.0 0.29 1E-05 50.6 4.3 33 249-281 650-682 (718)
89 3hbl_A Pyruvate carboxylase; T 88.7 0.39 1.3E-05 52.0 5.2 34 249-282 1078-1111(1150)
90 3va7_A KLLA0E08119P; carboxyla 87.8 0.48 1.6E-05 51.7 5.2 34 249-282 1168-1201(1236)
91 2xhc_A Transcription antitermi 87.4 0.19 6.6E-06 47.8 1.7 52 221-278 117-198 (352)
92 3u9t_A MCC alpha, methylcroton 86.2 0.14 4.8E-06 52.2 0.0 33 249-281 603-635 (675)
93 3lu0_D DNA-directed RNA polyme 85.6 0.8 2.8E-05 50.5 5.4 37 222-260 1000-1036(1407)
94 2qf7_A Pyruvate carboxylase pr 84.7 0.68 2.3E-05 50.1 4.4 33 249-281 1096-1128(1165)
95 1ax3_A Iiaglc, glucose permeas 84.4 0.5 1.7E-05 40.3 2.6 42 202-243 50-116 (162)
96 3our_B EIIA, phosphotransferas 78.6 1.6 5.5E-05 38.1 3.8 24 220-243 115-138 (183)
97 3cdx_A Succinylglutamatedesucc 68.4 7.2 0.00025 36.3 5.8 36 246-282 265-300 (354)
98 3dva_I Dihydrolipoyllysine-res 66.9 1.2 4E-05 43.2 0.0 35 202-246 46-80 (428)
99 3na6_A Succinylglutamate desuc 66.7 5.6 0.00019 36.8 4.6 34 248-282 257-290 (331)
100 3fmc_A Putative succinylglutam 66.0 5.6 0.00019 37.5 4.5 33 248-281 290-322 (368)
101 3d4r_A Domain of unknown funct 65.0 5.5 0.00019 34.4 3.8 44 231-285 94-137 (169)
102 1zy8_K Pyruvate dehydrogenase 64.5 1.4 4.7E-05 39.3 0.0 33 202-244 47-80 (229)
103 1uou_A Thymidine phosphorylase 61.9 11 0.00039 37.0 6.0 41 244-284 368-437 (474)
104 3it5_A Protease LASA; metallop 56.8 6.6 0.00023 33.6 3.0 21 224-244 84-104 (182)
105 1brw_A PYNP, protein (pyrimidi 55.6 16 0.00055 35.5 5.7 24 261-284 379-402 (433)
106 2dsj_A Pyrimidine-nucleoside ( 53.3 16 0.00055 35.4 5.4 24 261-284 371-394 (423)
107 3h5q_A PYNP, pyrimidine-nucleo 49.6 20 0.0007 34.9 5.4 20 261-280 382-401 (436)
108 3it5_A Protease LASA; metallop 47.7 29 0.001 29.5 5.6 56 202-281 49-104 (182)
109 2qj8_A MLR6093 protein; struct 47.3 21 0.00071 32.6 4.9 33 249-282 258-290 (332)
110 1zko_A Glycine cleavage system 46.4 5.3 0.00018 32.9 0.6 34 249-282 37-71 (136)
111 3lu0_D DNA-directed RNA polyme 45.4 11 0.00037 41.8 3.0 22 221-242 1103-1124(1407)
112 3nyy_A Putative glycyl-glycine 45.2 9.9 0.00034 34.2 2.3 19 226-244 183-201 (252)
113 3csq_A Morphogenesis protein 1 44.3 10 0.00035 35.1 2.3 22 223-244 249-270 (334)
114 3tuf_B Stage II sporulation pr 43.5 43 0.0015 30.0 6.3 61 203-282 95-155 (245)
115 2tpt_A Thymidine phosphorylase 43.4 16 0.00055 35.5 3.6 23 261-283 384-406 (440)
116 3tuf_B Stage II sporulation pr 41.6 12 0.0004 33.7 2.2 23 223-245 133-155 (245)
117 3nyy_A Putative glycyl-glycine 39.9 62 0.0021 28.9 6.7 63 202-282 140-202 (252)
118 2lmc_B DNA-directed RNA polyme 39.9 15 0.00052 28.0 2.3 17 261-277 66-82 (84)
119 1hpc_A H protein of the glycin 39.7 20 0.00069 29.2 3.1 34 249-282 28-62 (131)
120 1qwy_A Peptidoglycan hydrolase 39.2 13 0.00045 34.4 2.2 21 224-244 238-258 (291)
121 2hsi_A Putative peptidase M23; 38.9 14 0.00046 33.9 2.2 21 224-244 231-251 (282)
122 2auk_A DNA-directed RNA polyme 38.0 22 0.00075 30.6 3.3 28 212-243 159-186 (190)
123 3vr4_A V-type sodium ATPase ca 37.2 64 0.0022 32.8 6.9 41 226-268 130-173 (600)
124 2lmc_B DNA-directed RNA polyme 36.0 13 0.00045 28.3 1.4 25 212-240 58-82 (84)
125 1onl_A Glycine cleavage system 35.5 29 0.00098 28.1 3.4 34 249-282 28-62 (128)
126 1brw_A PYNP, protein (pyrimidi 35.5 34 0.0012 33.2 4.5 46 201-246 335-401 (433)
127 2dsj_A Pyrimidine-nucleoside ( 35.2 34 0.0012 33.1 4.4 23 224-246 371-393 (423)
128 2gu1_A Zinc peptidase; alpha/b 35.1 17 0.00057 34.0 2.2 21 225-245 284-304 (361)
129 3a7l_A H-protein, glycine clea 34.7 30 0.001 27.9 3.4 34 249-282 29-63 (128)
130 1yw4_A Succinylglutamate desuc 33.8 9 0.00031 35.6 0.1 36 225-260 277-317 (341)
131 3h5q_A PYNP, pyrimidine-nucleo 32.8 32 0.0011 33.5 3.8 43 201-243 338-401 (436)
132 1uou_A Thymidine phosphorylase 32.3 41 0.0014 33.1 4.5 46 201-246 372-436 (474)
133 2hsi_A Putative peptidase M23; 31.5 1.1E+02 0.0037 27.8 6.9 62 202-282 191-252 (282)
134 1x1o_A Nicotinate-nucleotide p 28.0 32 0.0011 31.5 2.7 20 225-244 76-95 (286)
135 1qpo_A Quinolinate acid phosph 26.6 32 0.0011 31.4 2.5 20 225-244 75-94 (284)
136 2gu1_A Zinc peptidase; alpha/b 26.4 1.6E+02 0.0054 27.2 7.3 62 202-282 243-304 (361)
137 1o4u_A Type II quinolic acid p 26.2 29 0.001 31.7 2.2 20 225-244 75-94 (285)
138 3tqv_A Nicotinate-nucleotide p 25.8 37 0.0013 31.3 2.7 20 225-244 79-98 (287)
139 3gqb_A V-type ATP synthase alp 25.0 92 0.0032 31.5 5.7 37 226-262 122-160 (578)
140 3l0g_A Nicotinate-nucleotide p 24.7 39 0.0013 31.4 2.7 20 225-244 88-107 (300)
141 2tpt_A Thymidine phosphorylase 24.2 31 0.001 33.6 2.0 46 201-246 340-406 (440)
142 3gnn_A Nicotinate-nucleotide p 22.4 49 0.0017 30.6 2.9 20 225-244 90-109 (298)
143 1qpo_A Quinolinate acid phosph 22.2 77 0.0026 28.9 4.1 25 257-281 70-94 (284)
144 1qwy_A Peptidoglycan hydrolase 22.2 1E+02 0.0035 28.4 5.0 63 202-282 196-259 (291)
145 3paj_A Nicotinate-nucleotide p 21.9 51 0.0017 30.8 2.9 20 225-244 112-131 (320)
146 2b7n_A Probable nicotinate-nuc 21.4 49 0.0017 29.7 2.6 19 226-244 63-81 (273)
147 2b7n_A Probable nicotinate-nuc 21.2 70 0.0024 28.7 3.6 21 261-281 61-81 (273)
148 1qap_A Quinolinic acid phospho 21.0 55 0.0019 30.0 2.9 20 225-244 89-108 (296)
No 1
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.68 E-value=3.3e-16 Score=117.88 Aligned_cols=76 Identities=25% Similarity=0.489 Sum_probs=71.9
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
..|+||+.|+|++.+. +...|++++||.|++||.|+.||+||+..+|+||++|+|.++++++|+.|..|++||.|+
T Consensus 5 ~~v~a~~~G~v~~~~~---~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPS---PDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEECSSSEEEESSSS---TTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred eEEEcCCCeEEEEecc---cCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 4799999999999754 688999999999999999999999999999999999999999999999999999999984
No 2
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.57 E-value=5.8e-15 Score=113.12 Aligned_cols=72 Identities=13% Similarity=0.215 Sum_probs=67.6
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|+||+.|+++++ +|++||.|++||+||.||+||+..+|+||++|+|.+++ +.|+.|..|++|++|.+
T Consensus 6 ~~v~a~~~G~v~~~----------~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~ 74 (84)
T 2kcc_A 6 TVLRSPSAGKLTQY----------TVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLEL 74 (84)
T ss_dssp TEECCSSSCCEEEE----------SSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEEC
T ss_pred ceEECCCCEEEEEE----------ECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeC
Confidence 36999999999986 89999999999999999999999999999999999999 99999999999999986
Q ss_pred CCC
Q 023091 282 SFH 284 (287)
Q Consensus 282 ~~~ 284 (287)
..+
T Consensus 75 ~~~ 77 (84)
T 2kcc_A 75 DDL 77 (84)
T ss_dssp SCS
T ss_pred CCh
Confidence 543
No 3
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.55 E-value=2e-14 Score=110.48 Aligned_cols=68 Identities=24% Similarity=0.395 Sum_probs=62.5
Q ss_pred cceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCC-eecCCCeEEEEecCCCC
Q 023091 208 TVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGD-AVGFGDPLIAVLPSFHD 285 (287)
Q Consensus 208 ~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd-~Ve~GqpL~~I~p~~~~ 285 (287)
..|++.+| +|++||.|++||+||.||+||+.++|+||++|+|.++++++|+ .|..|++|++|.....+
T Consensus 18 ~~G~v~~~----------~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~~~ 86 (87)
T 3crk_C 18 TMGTVQRW----------EKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEAD 86 (87)
T ss_dssp CEEEEEEE----------CSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESSSTT
T ss_pred CcEEEEEE----------EcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEcccCC
Confidence 46677765 8999999999999999999999999999999999999999999 89999999999976554
No 4
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.54 E-value=3.3e-14 Score=104.12 Aligned_cols=69 Identities=30% Similarity=0.460 Sum_probs=65.8
Q ss_pred EeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 204 VFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 204 V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
|+||+.|++.++ ++++||.|++||.|+.||++|+..+|+||++|+|.+++++.|+.|..|++|+.|.+.
T Consensus 2 v~a~~~G~v~~~----------~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 70 (72)
T 1z6h_A 2 VSIQMAGNLWKV----------HVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70 (72)
T ss_dssp EECCSSEEEEEE----------CCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred EECcccEEEEEE----------EcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence 789999999885 899999999999999999999999999999999999999999999999999999754
No 5
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=6.5e-14 Score=110.33 Aligned_cols=71 Identities=13% Similarity=0.231 Sum_probs=67.1
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|.||+.|++.++ ++++||.|++||+|+.||+||+..+|+||++|+|. +++++|+.|..|++|++|.+
T Consensus 18 ~~v~a~~~G~v~~~----------~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~ 86 (100)
T 2dn8_A 18 TVLRSPSAGKLTQY----------TVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL 86 (100)
T ss_dssp TEEECSSCEEEEEE----------SSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred cEEeCCCCEEEEEE----------EcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence 47999999999986 89999999999999999999999999999999999 99999999999999999986
Q ss_pred CC
Q 023091 282 SF 283 (287)
Q Consensus 282 ~~ 283 (287)
..
T Consensus 87 ~~ 88 (100)
T 2dn8_A 87 DD 88 (100)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 6
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=8.7e-14 Score=110.04 Aligned_cols=81 Identities=14% Similarity=0.279 Sum_probs=66.1
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCee-cCCCeEEEEe
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAV-GFGDPLIAVL 280 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~V-e~GqpL~~I~ 280 (287)
..|+.|..|..... +....|+|++||.|++||+||.||+||+.++|+||++|+|.++++++|+.| ..|++|++|.
T Consensus 8 ~~i~~P~lg~~~~~----G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~ 83 (98)
T 2dnc_A 8 IKILMPSLSPTMEE----GNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 83 (98)
T ss_dssp EEEECCCCSTTCSE----ECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEE
T ss_pred EEEECCCCCCCCcc----EEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEe
Confidence 45677764421111 122335999999999999999999999999999999999999999999998 9999999999
Q ss_pred cCCCCC
Q 023091 281 PSFHDI 286 (287)
Q Consensus 281 p~~~~~ 286 (287)
....++
T Consensus 84 ~~~~~~ 89 (98)
T 2dnc_A 84 EEGEDW 89 (98)
T ss_dssp CTTSCS
T ss_pred cCCCcc
Confidence 765544
No 7
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.50 E-value=1.5e-13 Score=100.77 Aligned_cols=69 Identities=30% Similarity=0.467 Sum_probs=65.6
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
..|+||+.|++.++ ++++||.|++||.|+.|+++++..+|+||++|+|.+++++.|+.|..|++|++|+
T Consensus 6 ~~v~a~~~G~v~~~----------~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 6 NVVSAPMPGKVLRV----------LVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp CEEECSSCEEEEEE----------CCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred eEEecCCCEEEEEE----------EcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 46999999999875 7999999999999999999999999999999999999999999999999999874
No 8
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.49 E-value=1e-13 Score=104.16 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=60.8
Q ss_pred CcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 207 PTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 207 P~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
++.|++.+ |+|++||.|++||+||.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+.
T Consensus 13 ~~~G~i~~----------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (79)
T 1ghj_A 13 IADGTVAT----------WHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG 78 (79)
T ss_dssp CSCEEECC----------CSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred CCCEEEEE----------EEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEecC
Confidence 45677665 5899999999999999999999999999999999999999999999999999999763
No 9
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.49 E-value=1.7e-13 Score=101.66 Aligned_cols=70 Identities=31% Similarity=0.434 Sum_probs=66.3
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
...|+||+.|.+.++ ++++||.|++||+|+.|+.+|+..+|+||++|+|.+++++.|+.|..|++|+.|+
T Consensus 8 ~~~v~a~~~G~v~~~----------~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKI----------LVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SSEEEBSSSCEEEEE----------CCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CeEEECCCCEEEEEE----------EcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 357999999999875 7999999999999999999999999999999999999999999999999999884
No 10
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.48 E-value=1.2e-13 Score=107.94 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=61.2
Q ss_pred cceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091 208 TVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 208 ~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
..|++.+| +|++||.|++||+||.||+||+.++|+||++|+|.++++++|+.|..|++|++|.+..
T Consensus 17 ~~G~v~~~----------~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~ 82 (93)
T 1k8m_A 17 REVTVKEW----------YVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEA 82 (93)
T ss_dssp CCEEEEEE----------CCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred CCEEEEEE----------EcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 46677765 8999999999999999999999999999999999999999999999999999998653
No 11
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.47 E-value=1.4e-13 Score=148.71 Aligned_cols=71 Identities=27% Similarity=0.495 Sum_probs=67.9
Q ss_pred CCceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEE
Q 023091 199 NGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIA 278 (287)
Q Consensus 199 ~~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~ 278 (287)
.+...|+|||.|+|+++ +|++||.|++||+||+||+|||+++|+||++|+|.+|++++|+.|++||+|++
T Consensus 1165 ~~~~~v~ap~~G~v~~~----------~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~ 1234 (1236)
T 3va7_A 1165 DDAELLYSEYTGRFWKP----------VAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAV 1234 (1236)
T ss_dssp TTCEEEECSSCEEEEEE----------SSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEE
T ss_pred CCCcEEeCCCcEEEEEE----------EcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEE
Confidence 45578999999999985 89999999999999999999999999999999999999999999999999998
Q ss_pred E
Q 023091 279 V 279 (287)
Q Consensus 279 I 279 (287)
|
T Consensus 1235 i 1235 (1236)
T 3va7_A 1235 I 1235 (1236)
T ss_dssp E
T ss_pred e
Confidence 7
No 12
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.46 E-value=1.4e-13 Score=140.64 Aligned_cols=70 Identities=17% Similarity=0.313 Sum_probs=66.9
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
...|+|||.|+++++ +|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|+.|++|++|+
T Consensus 612 ~~~v~ap~~G~v~~~----------~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKV----------DVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp CSEEECCSCEEEEEE----------CCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCeEECCCcEEEEEE----------EeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 357999999999986 8999999999999999999999999999999999999999999999999999984
No 13
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.46 E-value=2.5e-13 Score=113.01 Aligned_cols=72 Identities=22% Similarity=0.390 Sum_probs=64.4
Q ss_pred eEEeCCcc------eEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCC-eecCCC
Q 023091 202 VLVFSPTV------GSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGD-AVGFGD 274 (287)
Q Consensus 202 ~~V~AP~v------Gtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd-~Ve~Gq 274 (287)
..|+.|.. |++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|+
T Consensus 28 ~~i~~P~lG~~~~~G~V~~----------~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~ 97 (128)
T 1y8o_B 28 MQVLLPALSPTMTMGTVQR----------WEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGT 97 (128)
T ss_dssp EEEECCCSSTTCSEEEEEE----------ECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTC
T ss_pred eeEEcCCCCCCcccEEEEE----------EecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCC
Confidence 45777765 55655 59999999999999999999999999999999999999999998 899999
Q ss_pred eEEEEecCC
Q 023091 275 PLIAVLPSF 283 (287)
Q Consensus 275 pL~~I~p~~ 283 (287)
+|++|....
T Consensus 98 ~L~~i~~~~ 106 (128)
T 1y8o_B 98 PLCIIVEKE 106 (128)
T ss_dssp EEEEEESSG
T ss_pred EEEEEecCc
Confidence 999998653
No 14
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.45 E-value=1.8e-13 Score=102.10 Aligned_cols=65 Identities=26% Similarity=0.416 Sum_probs=61.3
Q ss_pred CCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 206 SPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 206 AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
+++.|++.++ ++++||.|++||.||.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.
T Consensus 12 ~~~~G~v~~~----------~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 12 GVTEGEIVRW----------DVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp SCCCEEEEEC----------SCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred CCccEEEEEE----------EeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 4678888875 8999999999999999999999999999999999999999999999999999986
No 15
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.44 E-value=2.6e-13 Score=109.25 Aligned_cols=58 Identities=24% Similarity=0.241 Sum_probs=55.9
Q ss_pred CcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCC-eecCCCeEEEEecC
Q 023091 225 PICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGD-AVGFGDPLIAVLPS 282 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd-~Ve~GqpL~~I~p~ 282 (287)
|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|++|...
T Consensus 27 ~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~~ 85 (108)
T 2dne_A 27 WEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGK 85 (108)
T ss_dssp CSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEESC
T ss_pred EEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEecC
Confidence 59999999999999999999999999999999999999999999 89999999999864
No 16
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.43 E-value=7e-13 Score=99.50 Aligned_cols=61 Identities=28% Similarity=0.346 Sum_probs=57.8
Q ss_pred CCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091 223 QSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 223 ~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
..|+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|+.|.+..
T Consensus 16 ~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~ 76 (79)
T 1iyu_A 16 IELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA 76 (79)
T ss_dssp EEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred EEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence 4468999999999999999999999999999999999999999999999999999998754
No 17
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.41 E-value=5.8e-13 Score=104.83 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=68.3
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|++|+.|++.++ ++++||.|++||+|+.||.+|+..+|+||++|+|.+++++.|+.|..|++|++|..
T Consensus 15 ~~v~a~~~G~v~~~----------~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~ 84 (99)
T 2ejm_A 15 GGPLAPMTGTIEKV----------FVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEE 84 (99)
T ss_dssp SSCBCSSSEEEEEE----------CCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECC
T ss_pred eEEecCCCEEEEEE----------ECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEEC
Confidence 35899999999886 89999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 023091 282 SFH 284 (287)
Q Consensus 282 ~~~ 284 (287)
...
T Consensus 85 ~~~ 87 (99)
T 2ejm_A 85 EES 87 (99)
T ss_dssp CCS
T ss_pred CCc
Confidence 544
No 18
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.41 E-value=7.5e-13 Score=99.23 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=56.6
Q ss_pred CcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091 225 PICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
|++++||.|++||+||.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+..
T Consensus 20 ~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 78 (80)
T 1qjo_A 20 VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 78 (80)
T ss_dssp CCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred EEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEccC
Confidence 58999999999999999999999999999999999999999999999999999998753
No 19
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.41 E-value=4e-14 Score=108.17 Aligned_cols=70 Identities=21% Similarity=0.238 Sum_probs=64.8
Q ss_pred EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
.|++|..|++.+ |+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|+.|...
T Consensus 4 ~i~~p~~G~v~~----------~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 4 EVNVPDIVEVTE----------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp CCCCCSCCCCCS----------CCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred EEECCCeEEEEE----------EEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 367888887765 5899999999999999999999999999999999999999999999999999999864
No 20
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.38 E-value=7.7e-13 Score=142.11 Aligned_cols=71 Identities=18% Similarity=0.305 Sum_probs=67.1
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|.|||.|+++++ +|++||.|++||+||+||+|||+++|+||++|+|.++++++|+.|..||+|+.|++
T Consensus 1078 ~~v~ap~~G~v~~~----------~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A 1078 SHIGAQMPGSVTEV----------KVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp SEEECSSSEEEEEE----------CCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC-
T ss_pred ceeecCceEEEEEE----------EeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence 57999999999986 89999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 023091 282 S 282 (287)
Q Consensus 282 ~ 282 (287)
.
T Consensus 1148 ~ 1148 (1150)
T 3hbl_A 1148 A 1148 (1150)
T ss_dssp -
T ss_pred C
Confidence 4
No 21
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.38 E-value=1.8e-13 Score=103.04 Aligned_cols=69 Identities=20% Similarity=0.154 Sum_probs=63.6
Q ss_pred eCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091 205 FSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 205 ~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
.+++.|++.++ ++++||.|++||+||.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+..
T Consensus 11 g~~~~G~i~~~----------~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~~ 79 (81)
T 1gjx_A 11 GGHENVDIIAV----------EVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEG 79 (81)
T ss_dssp SSCSSEEEEEE----------CCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCSC
T ss_pred CCCCcEEEEEE----------EcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEecC
Confidence 35678888775 8999999999999999999999999999999999999999999999999999998643
No 22
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.38 E-value=8e-14 Score=108.95 Aligned_cols=69 Identities=28% Similarity=0.403 Sum_probs=30.6
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
..|+||+.|++.++ ++++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|+.|+
T Consensus 26 ~~v~a~~~G~v~~~----------~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 26 SVLRSPMPGVVVAV----------SVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp CCCCCSSSCEEEEE----------CCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred eEEECCCCEEEEEE----------ECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 35899999999986 7999999999999999999999999999999999999999999999999999874
No 23
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=99.36 E-value=1.9e-13 Score=114.93 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=54.3
Q ss_pred cCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEE---ecCCCCeec---CCC-eEEEEecCC
Q 023091 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKL---LFDDGDAVG---FGD-PLIAVLPSF 283 (287)
Q Consensus 228 ~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vvei---lv~dGd~Ve---~Gq-pL~~I~p~~ 283 (287)
++||.|++||+||+||+||++++|.||++|+|+++ ++++|+.|+ ||+ +||+|++.+
T Consensus 54 ~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~~~ 116 (136)
T 1zko_A 54 EVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISD 116 (136)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESC
T ss_pred CCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEECC
Confidence 99999999999999999999999999999999999 899999999 999 999999765
No 24
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.33 E-value=1.2e-13 Score=140.85 Aligned_cols=71 Identities=25% Similarity=0.393 Sum_probs=0.0
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|+|||.|+++++ +|++||.|++||+||+||+|||.++|+||.+|+|.++++++|+.|..|++|++|++
T Consensus 603 ~~v~ap~~G~v~~~----------~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~ 672 (675)
T 3u9t_A 603 GGLSAPMNGSIVRV----------LVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDE 672 (675)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEECCCCEEEEEE----------EeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEec
Confidence 46999999999975 89999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 023091 282 S 282 (287)
Q Consensus 282 ~ 282 (287)
.
T Consensus 673 ~ 673 (675)
T 3u9t_A 673 N 673 (675)
T ss_dssp -
T ss_pred C
Confidence 4
No 25
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.32 E-value=1e-13 Score=104.69 Aligned_cols=59 Identities=19% Similarity=0.138 Sum_probs=56.1
Q ss_pred CCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 223 QSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 223 ~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|+|++||.|++||+||.||+||+..+|+||++|+|.++++++|+.|..|++|++|.+
T Consensus 20 ~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 20 ATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred EEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 34699999999999999999999999999999999999999999999999999999875
No 26
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.14 E-value=3e-11 Score=130.04 Aligned_cols=69 Identities=19% Similarity=0.338 Sum_probs=59.7
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
..|.|||.|+++++ +|++||.|++||+|++||+|||.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 1096 ~~v~ap~~G~v~~~----------~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1096 AHVGAPMPGVISRV----------FVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp TEEECSSCEEEEEE----------CCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred ceeeCCCCeEEEEE----------EcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 46999999999986 8999999999999999999999999999999999999999999999999999875
No 27
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=99.13 E-value=1.5e-11 Score=126.75 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=65.6
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
..|.|||.|+++++ +|++||.|++||+||+||+|||.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 650 ~~v~ap~~G~V~~v----------~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 650 GQIGAPMPGKVIDI----------KVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp SCEECSSCEEEEEE----------CSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred ceEeCCCCeEEEEE----------EeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 35999999999986 8999999999999999999999999999999999999999999999999999763
No 28
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=99.12 E-value=5.7e-12 Score=122.79 Aligned_cols=77 Identities=22% Similarity=0.295 Sum_probs=0.0
Q ss_pred EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
.|+-|..|.-... +....|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|+.|...
T Consensus 4 ~i~mP~lg~~~~e----g~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~ 79 (428)
T 3dva_I 4 EFKLPDIGEGIHE----GEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP 79 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEcCCCCCCCcc----EEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 4666777743222 356678999999999999999999999999999999999999999999999999999999864
Q ss_pred C
Q 023091 283 F 283 (287)
Q Consensus 283 ~ 283 (287)
.
T Consensus 80 ~ 80 (428)
T 3dva_I 80 G 80 (428)
T ss_dssp -
T ss_pred C
Confidence 3
No 29
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.08 E-value=1.2e-11 Score=111.83 Aligned_cols=75 Identities=13% Similarity=0.318 Sum_probs=0.0
Q ss_pred EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCe-ecCCCeEEEEec
Q 023091 203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDA-VGFGDPLIAVLP 281 (287)
Q Consensus 203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~-Ve~GqpL~~I~p 281 (287)
.|+.|..|.-... +....|+|++||.|++||+||.||+||+.++|+|+++|+|.+++++.|+. |..|++|++|..
T Consensus 5 ei~mP~lGesm~e----G~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~ 80 (229)
T 1zy8_K 5 KILMPSLSPTMEE----GNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE 80 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEecCCCCCCCCc----EEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEec
Confidence 4677777754332 35667899999999999999999999999999999999999999999997 999999999964
No 30
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=99.01 E-value=6.7e-10 Score=88.48 Aligned_cols=72 Identities=25% Similarity=0.326 Sum_probs=64.5
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCee-----------------------------eeee
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTE-----------------------------LPVK 252 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~-----------------------------~eV~ 252 (287)
..|.||+.|.+.+. +|++||.|++||+|+.|+..+.. ..|+
T Consensus 2 ~~v~a~~~G~V~~v----------~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~ 71 (116)
T 2k32_A 2 VIIKPQVSGVIVNK----------LFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIK 71 (116)
T ss_dssp EEECCSSCEEEEEE----------CSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEE
T ss_pred eEEeCcCCEEEEEE----------ECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEE
Confidence 46899999999875 79999999999999999987544 3899
Q ss_pred cCCCeEEEEEecCCCCeecCC-CeEEEEecCC
Q 023091 253 SDVAGEVLKLLFDDGDAVGFG-DPLIAVLPSF 283 (287)
Q Consensus 253 Ap~sG~Vveilv~dGd~Ve~G-qpL~~I~p~~ 283 (287)
||++|+|.++.++.|+.|..| ++|+.|.+..
T Consensus 72 AP~~G~V~~~~~~~G~~v~~g~~~l~~i~~~~ 103 (116)
T 2k32_A 72 APFDGTIGDALVNIGDYVSASTTELVRVTNLN 103 (116)
T ss_dssp CSSSEEECCCSCCTTCEECTTTSCCEEEECSC
T ss_pred cCCCEEEEEEECCCCCEEcCCCcEEEEEECCC
Confidence 999999999999999999999 9999998643
No 31
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=99.01 E-value=2.3e-10 Score=95.54 Aligned_cols=70 Identities=17% Similarity=0.302 Sum_probs=59.7
Q ss_pred eCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCeec---CCC-eEE
Q 023091 205 FSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAVG---FGD-PLI 277 (287)
Q Consensus 205 ~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~Ve---~Gq-pL~ 277 (287)
..|+.|.+...- +.++||.|++||+||+||+||+.++|.||++|+|++++ .++.+.|+ ||+ +||
T Consensus 31 a~~~lG~i~~v~---------lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~ 101 (131)
T 1hpc_A 31 AQDHLGEVVFVE---------LPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMI 101 (131)
T ss_dssp HHHHHCSEEEEE---------CCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCE
T ss_pred hcccCCCceEEE---------ecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEE
Confidence 357778655441 24999999999999999999999999999999999997 66778886 888 999
Q ss_pred EEecCC
Q 023091 278 AVLPSF 283 (287)
Q Consensus 278 ~I~p~~ 283 (287)
+|++.+
T Consensus 102 ~i~~~~ 107 (131)
T 1hpc_A 102 KIKPTS 107 (131)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 999765
No 32
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=99.00 E-value=4.5e-10 Score=93.33 Aligned_cols=71 Identities=13% Similarity=0.193 Sum_probs=60.3
Q ss_pred eCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCeec---CCC-eEE
Q 023091 205 FSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAVG---FGD-PLI 277 (287)
Q Consensus 205 ~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~Ve---~Gq-pL~ 277 (287)
..|+.|.+...- +.++||.|++||+||+||+||+.++|.||++|+|++++ .++.+.|+ ||+ +||
T Consensus 32 a~~~lG~i~~v~---------lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~ 102 (128)
T 3a7l_A 32 AQELLGDMVFVD---------LPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIF 102 (128)
T ss_dssp HHHHHCSEEEEE---------CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCE
T ss_pred HhccCCceEEEE---------ecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEE
Confidence 356777654431 24899999999999999999999999999999999996 58889999 998 999
Q ss_pred EEecCCC
Q 023091 278 AVLPSFH 284 (287)
Q Consensus 278 ~I~p~~~ 284 (287)
+|++.+.
T Consensus 103 ~i~~~~~ 109 (128)
T 3a7l_A 103 KIKASDE 109 (128)
T ss_dssp EEEESCG
T ss_pred EEEECCH
Confidence 9997653
No 33
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.99 E-value=3.8e-10 Score=93.80 Aligned_cols=58 Identities=19% Similarity=0.350 Sum_probs=53.0
Q ss_pred ccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCee---cCCC-eEEEEecCCC
Q 023091 227 CKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAV---GFGD-PLIAVLPSFH 284 (287)
Q Consensus 227 V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~V---e~Gq-pL~~I~p~~~ 284 (287)
.++||.|++||+||+||+||++++|.||++|+|++++ .++.+.| .||+ +||+|++.+.
T Consensus 44 p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~~ 108 (128)
T 1onl_A 44 PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRDM 108 (128)
T ss_dssp BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESCG
T ss_pred cCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEECCH
Confidence 4999999999999999999999999999999999996 5688888 7998 9999997653
No 34
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=98.60 E-value=6.3e-08 Score=80.36 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=51.2
Q ss_pred cCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCeec---CCC-eEEEEecCCC
Q 023091 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAVG---FGD-PLIAVLPSFH 284 (287)
Q Consensus 228 ~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~Ve---~Gq-pL~~I~p~~~ 284 (287)
++|+.|++|+.+|.||++|+..+|.||++|+|++++ .++-+.|+ ||+ +||+|++.+.
T Consensus 41 ~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~~~~~ 104 (125)
T 3klr_A 41 EVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSNP 104 (125)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEEESCG
T ss_pred CCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEEECCH
Confidence 899999999999999999999999999999999995 66777776 887 9999997653
No 35
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=98.46 E-value=2.8e-07 Score=78.14 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=49.5
Q ss_pred cCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCeec---CCC-eEEEEecCCC
Q 023091 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAVG---FGD-PLIAVLPSFH 284 (287)
Q Consensus 228 ~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~Ve---~Gq-pL~~I~p~~~ 284 (287)
++|+.|++||.+|.||++|...+|.||++|+|++++ .++-+.|+ ||+ +|++|++.+.
T Consensus 63 ~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~PeliN~dPy~~GWl~ki~~~d~ 126 (143)
T 3mxu_A 63 QNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAESPELVNQKAETEGWLWKMTVQDE 126 (143)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHSTTTTTCCEEEECSCT
T ss_pred CCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhhCCCCCCCeEEEEEECCH
Confidence 899999999999999999999999999999999997 34444553 786 9999998653
No 36
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=98.36 E-value=2.3e-07 Score=78.15 Aligned_cols=55 Identities=20% Similarity=0.422 Sum_probs=49.2
Q ss_pred cCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCee---cCCC-eEEEEecC
Q 023091 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAV---GFGD-PLIAVLPS 282 (287)
Q Consensus 228 ~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~V---e~Gq-pL~~I~p~ 282 (287)
++|+.|++||.+|.||++|+..+|.||++|+|++++ .++-+.| .||+ +||+|++.
T Consensus 58 ~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~~l~~~P~liN~dPy~~GWl~ki~~~ 119 (137)
T 3tzu_A 58 EVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNTAAVDDPATIATDPYGAGWLYSVQPT 119 (137)
T ss_dssp CTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECHHHHHCTHHHHHCTTTTTCCEEEEEE
T ss_pred CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehhhhhcChhhhcCCCCcCCcEEEEEeh
Confidence 899999999999999999999999999999999995 5666666 4886 99999864
No 37
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=98.27 E-value=2.2e-06 Score=79.14 Aligned_cols=73 Identities=25% Similarity=0.261 Sum_probs=63.9
Q ss_pred CceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe--------------------------------
Q 023091 200 GYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT-------------------------------- 247 (287)
Q Consensus 200 ~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~-------------------------------- 247 (287)
....|.++..|.+... +|++||.|++||+|+.|+.-.+
T Consensus 56 ~~~~v~~~~~G~V~~v----------~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~ 125 (359)
T 3lnn_A 56 KLVKVLPPLAGRIVSL----------NKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEI 125 (359)
T ss_dssp SEEEECCSSCEEEEEC----------CSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred cEEEEeccCCEEEEEE----------EcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4578999999999875 7999999999999999996542
Q ss_pred --------------------------------------------eeeeecCCCeEEEEEecCCCCeecC-CCeEEEEecC
Q 023091 248 --------------------------------------------ELPVKSDVAGEVLKLLFDDGDAVGF-GDPLIAVLPS 282 (287)
Q Consensus 248 --------------------------------------------~~eV~Ap~sG~Vveilv~dGd~Ve~-GqpL~~I~p~ 282 (287)
...|+||++|+|.++.++.|+.|.. |++|+.|...
T Consensus 126 ~s~~~~~~a~~~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~ 205 (359)
T 3lnn_A 126 AAKRDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADL 205 (359)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecC
Confidence 2479999999999999999999999 9999998753
No 38
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=98.18 E-value=4e-06 Score=80.17 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=61.9
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcc-cCCCEEcCCCEEEEEEec----------------------------------
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPIC-KEGDVIKEGQTIGYLDQF---------------------------------- 245 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V-~vGd~Vk~GqvL~iIEam---------------------------------- 245 (287)
...|.++..|.+.+. +| ++||.|++||+|+.|+.-
T Consensus 121 ~~~v~a~~~G~V~~v----------~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~ 190 (413)
T 3ne5_B 121 YAIVQARAAGFIDKV----------YPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGM 190 (413)
T ss_dssp EEEECCSSCEEEEEE----------CSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred eEEEecccCEEEEEE----------EeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCC
Confidence 367899999998875 78 999999999999999941
Q ss_pred --------------CeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 246 --------------GTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 246 --------------K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
.....|+||++|+|.++.++.|+.|..|++||.|..
T Consensus 191 ~~~~~~~l~~~~~~~~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~ 240 (413)
T 3ne5_B 191 PEADIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQG 240 (413)
T ss_dssp CHHHHHHHHHHTSCCCEEEEECSSSEEEEECCCCTTCEECTTSCSEEEEE
T ss_pred CHHHHHHHHHhccccccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeC
Confidence 123579999999999999999999999999999863
No 39
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=98.17 E-value=1.1e-06 Score=78.49 Aligned_cols=72 Identities=24% Similarity=0.230 Sum_probs=62.1
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC----------------------------------
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG---------------------------------- 246 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK---------------------------------- 246 (287)
...|.++..|.+... +|++||.|++||+|+.|+...
T Consensus 22 ~~~v~a~~~G~V~~v----------~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~ 91 (277)
T 2f1m_A 22 IAEVRPQVSGIILKR----------NFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLG 91 (277)
T ss_dssp EEEECCSSCEEEEEE----------CSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred EEEEEccccEEEEEE----------EcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999875 799999999999999998531
Q ss_pred -------------------------------------eeeeeecCCCeEEEEEecCCCCeecCC--CeEEEEecC
Q 023091 247 -------------------------------------TELPVKSDVAGEVLKLLFDDGDAVGFG--DPLIAVLPS 282 (287)
Q Consensus 247 -------------------------------------~~~eV~Ap~sG~Vveilv~dGd~Ve~G--qpL~~I~p~ 282 (287)
-...|+||++|+|..+.++.|+.|..| ++|+.|...
T Consensus 92 ~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~ 166 (277)
T 2f1m_A 92 TQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQL 166 (277)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEEC
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecC
Confidence 024799999999999999999999999 599998653
No 40
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=98.15 E-value=2.7e-06 Score=73.05 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=49.5
Q ss_pred cCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCeec---CCC-eEEEEecCC
Q 023091 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAVG---FGD-PLIAVLPSF 283 (287)
Q Consensus 228 ~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~Ve---~Gq-pL~~I~p~~ 283 (287)
++|+.|++|+.+|.||++|...+|.||++|+|++++ .++-+.|+ ||+ +|++|++.+
T Consensus 68 ~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~~L~d~PeliN~dPyg~GWl~kik~~d 130 (155)
T 3hgb_A 68 VIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDS 130 (155)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEECCT
T ss_pred CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhccCCCCCcEEEEEEECC
Confidence 899999999999999999999999999999999997 34455554 776 999999875
No 41
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=98.12 E-value=4.7e-06 Score=76.42 Aligned_cols=71 Identities=21% Similarity=0.244 Sum_probs=61.5
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe---------------------------------
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT--------------------------------- 247 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~--------------------------------- 247 (287)
...|.++..|.+... +|++||.|++||+|+.|+....
T Consensus 31 ~~~v~~~~~G~V~~v----------~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~ 100 (341)
T 3fpp_A 31 KVDVGAQVSGQLKTL----------SVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYS 100 (341)
T ss_dssp EEECCCSSCEEEEEE----------CCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred EEEEeccCCcEEEEE----------EeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999875 7999999999999999986311
Q ss_pred ----------------------------------------------------eeeeecCCCeEEEEEecCCCCeecCCCe
Q 023091 248 ----------------------------------------------------ELPVKSDVAGEVLKLLFDDGDAVGFGDP 275 (287)
Q Consensus 248 ----------------------------------------------------~~eV~Ap~sG~Vveilv~dGd~Ve~Gqp 275 (287)
...|+||++|+|.++.++.|+.|..|++
T Consensus 101 r~~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~ 180 (341)
T 3fpp_A 101 RQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQ 180 (341)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTS
T ss_pred HHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCC
Confidence 1359999999999999999999999997
Q ss_pred ---EEEEec
Q 023091 276 ---LIAVLP 281 (287)
Q Consensus 276 ---L~~I~p 281 (287)
|+.|..
T Consensus 181 ~~~l~~i~~ 189 (341)
T 3fpp_A 181 APNILTLAD 189 (341)
T ss_dssp CCCCEEEEC
T ss_pred CceEEEEec
Confidence 888764
No 42
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=97.97 E-value=6.5e-06 Score=77.17 Aligned_cols=72 Identities=22% Similarity=0.256 Sum_probs=62.0
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe---------------------------------
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT--------------------------------- 247 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~--------------------------------- 247 (287)
...|.++..|.+... +|++||.|++||+|+.|+....
T Consensus 43 ~~~v~a~v~G~V~~v----------~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~ 112 (369)
T 1vf7_A 43 IAEVRPQVNGIILKR----------LFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQ 112 (369)
T ss_dssp EEEECCSSCEEEEEC----------CSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred EEEEEeeCceEEEEE----------EcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 468999999999874 7999999999999999985321
Q ss_pred ------------------------eeeeecCCCeEEEEEecCCCCeecCC--CeEEEEecC
Q 023091 248 ------------------------ELPVKSDVAGEVLKLLFDDGDAVGFG--DPLIAVLPS 282 (287)
Q Consensus 248 ------------------------~~eV~Ap~sG~Vveilv~dGd~Ve~G--qpL~~I~p~ 282 (287)
...|+||++|+|.++.++.|+.|..| ++|+.|...
T Consensus 113 ~~~~a~~~~~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~ 173 (369)
T 1vf7_A 113 QYADANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQL 173 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecC
Confidence 24799999999999999999999995 899998753
No 43
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=97.85 E-value=6e-05 Score=70.70 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=58.3
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEec----CeeeeeecCCCeEEEEEecCCCCeecCCCeE
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQF----GTELPVKSDVAGEVLKLLFDDGDAVGFGDPL 276 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEam----K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL 276 (287)
...|+||..|.|+. +++.||.|++||+|+.|... ....+|+||.+|+|.... ..-.|..|+.|
T Consensus 257 ~~~v~A~~~Gl~~~-----------~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~~V~~G~~l 323 (331)
T 3na6_A 257 DCYLFSEHDGLFEI-----------MIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPGMIKSGDCA 323 (331)
T ss_dssp CCCEECSSCEEEEE-----------SSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSSEECTTCEE
T ss_pred cEEEeCCCCeEEEE-----------cCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEE
Confidence 35789999998874 68999999999999999974 457899999999998765 45689999999
Q ss_pred EEEec
Q 023091 277 IAVLP 281 (287)
Q Consensus 277 ~~I~p 281 (287)
|.|..
T Consensus 324 ~~Ia~ 328 (331)
T 3na6_A 324 AVIGV 328 (331)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99864
No 44
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=97.67 E-value=0.00019 Score=67.70 Aligned_cols=68 Identities=22% Similarity=0.302 Sum_probs=58.4
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEec----CeeeeeecCCCeEEEEEecCCCCeecCCCeE
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQF----GTELPVKSDVAGEVLKLLFDDGDAVGFGDPL 276 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEam----K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL 276 (287)
...++||..|.|.. .++.||.|++||+|+.|+.+ ++..+|+||.+|+|..+. ....|..|+.|
T Consensus 267 ~~~v~A~~~G~~~~-----------~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~V~~Gd~l 333 (354)
T 3cdx_A 267 DAYVMAPRTGLFEP-----------THYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGRVTRGDAV 333 (354)
T ss_dssp GGEEECSSCEEEEE-----------SCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSEECTTCEE
T ss_pred cEEEECCCCEEEEE-----------eCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCccCCCCEE
Confidence 45789999997653 57899999999999999984 677899999999998775 67789999999
Q ss_pred EEEec
Q 023091 277 IAVLP 281 (287)
Q Consensus 277 ~~I~p 281 (287)
|.|..
T Consensus 334 ~~ia~ 338 (354)
T 3cdx_A 334 AVVME 338 (354)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 99864
No 45
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=97.66 E-value=0.00015 Score=69.20 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=59.1
Q ss_pred CceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe------cCeeeeeecCCCeEEEEEecCCCCeecCC
Q 023091 200 GYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ------FGTELPVKSDVAGEVLKLLFDDGDAVGFG 273 (287)
Q Consensus 200 ~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa------mK~~~eV~Ap~sG~Vveilv~dGd~Ve~G 273 (287)
+...|+||..|.|+. .++.||.|++||+|+.|-. .....+|+||.+|+|.-.. ..-.|..|
T Consensus 289 ~~~~v~A~~~Gl~~~-----------~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~--~~p~V~~G 355 (368)
T 3fmc_A 289 NYRKFHAPKAGMVEY-----------LGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHF--ASASVHQG 355 (368)
T ss_dssp GEEEEECSSCEEEEE-----------CSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEEC--SSSEECTT
T ss_pred CcEEEecCCCEEEEE-----------eCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEe--CCCccCCC
Confidence 356899999999984 6999999999999999987 3466899999999997665 44789999
Q ss_pred CeEEEEec
Q 023091 274 DPLIAVLP 281 (287)
Q Consensus 274 qpL~~I~p 281 (287)
+.|+.|-.
T Consensus 356 ~~l~~i~~ 363 (368)
T 3fmc_A 356 TELYKVMT 363 (368)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEee
Confidence 99999864
No 46
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.62 E-value=2.6e-05 Score=60.85 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=43.2
Q ss_pred CCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 236 GQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 236 GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
|..+|.++.++....|.|+.+|+|.++++++||.|..||+|++|+.
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~ 50 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV 50 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEe
Confidence 5677999999999999999999999999999999999999999985
No 47
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=97.49 E-value=6.9e-06 Score=75.96 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=58.4
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe----------------------------------
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT---------------------------------- 247 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~---------------------------------- 247 (287)
..|.++..|.+... +|++||.|++||+|+.|+....
T Consensus 33 ~~v~~~~~G~V~~v----------~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r 102 (369)
T 4dk0_A 33 VDVGAQVSGKITKL----------YVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQR 102 (369)
T ss_dssp CCBCCCSCSBCCEE----------CCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred EEEecCCCcEEEEE----------EECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999988664 7999999999999999986421
Q ss_pred ---------------------------------------------------eeeeecCCCeEEEEEecCCCCeecCCCe-
Q 023091 248 ---------------------------------------------------ELPVKSDVAGEVLKLLFDDGDAVGFGDP- 275 (287)
Q Consensus 248 ---------------------------------------------------~~eV~Ap~sG~Vveilv~dGd~Ve~Gqp- 275 (287)
...|+||++|+|.++.++.|+.|..|++
T Consensus 103 ~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~ 182 (369)
T 4dk0_A 103 LSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTT 182 (369)
T ss_dssp HHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSC
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCc
Confidence 1259999999999999999999999998
Q ss_pred --EEEEe
Q 023091 276 --LIAVL 280 (287)
Q Consensus 276 --L~~I~ 280 (287)
|+.|.
T Consensus 183 ~~l~~i~ 189 (369)
T 4dk0_A 183 PTIIKVA 189 (369)
T ss_dssp CCCBBCC
T ss_pred ceEEEEc
Confidence 76654
No 48
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=97.35 E-value=0.0004 Score=59.69 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=54.4
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcC----CCEEEEEEecCeeeeeecCCCeEEEEE---------------
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKE----GQTIGYLDQFGTELPVKSDVAGEVLKL--------------- 262 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~----GqvL~iIEamK~~~eV~Ap~sG~Vvei--------------- 262 (287)
..|.||+.|++..- -++.|.+-. |+.+++.... ..|+||++|+|..+
T Consensus 13 ~~i~aP~~G~vv~l-----------~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~ 78 (161)
T 1f3z_A 13 IEIIAPLSGEIVNI-----------EDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGV 78 (161)
T ss_dssp EEEECSSCEEEEEG-----------GGSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSC
T ss_pred cEEEecCCeEEEEe-----------EECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCC
Confidence 46999999999864 355665555 8888887764 57899999999998
Q ss_pred --------------------ecCCCCeecCCCeEEEEe
Q 023091 263 --------------------LFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 263 --------------------lv~dGd~Ve~GqpL~~I~ 280 (287)
+|+.||.|..||+|+++.
T Consensus 79 evLiHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (161)
T 1f3z_A 79 ELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD 116 (161)
T ss_dssp EEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred EEEEEECccchhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence 899999999999999886
No 49
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=97.31 E-value=0.00045 Score=58.88 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=54.4
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcC----CCEEEEEEecCeeeeeecCCCeEEEE----------------
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKE----GQTIGYLDQFGTELPVKSDVAGEVLK---------------- 261 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~----GqvL~iIEamK~~~eV~Ap~sG~Vve---------------- 261 (287)
..|.||+.|++..- -++.|.+-. |+.+++.... ..++||++|+|..
T Consensus 8 ~~i~aP~~G~vv~l-----------~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~ 73 (154)
T 2gpr_A 8 LKVLAPCDGTIITL-----------DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGV 73 (154)
T ss_dssp EEEECSSSEEEECG-----------GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSC
T ss_pred CEEEecCCeEEEEe-----------eECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCC
Confidence 46999999999864 466666655 8888888764 5899999999998
Q ss_pred -------------------EecCCCCeecCCCeEEEEe
Q 023091 262 -------------------LLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 262 -------------------ilv~dGd~Ve~GqpL~~I~ 280 (287)
++|+.||.|..||+|+++.
T Consensus 74 evLiHiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d 111 (154)
T 2gpr_A 74 EILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVD 111 (154)
T ss_dssp EEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred EEEEEECcchhhcCCCceEEEEcCCCEEcCCCEEEEEC
Confidence 4899999999999999886
No 50
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=97.04 E-value=0.00041 Score=59.62 Aligned_cols=64 Identities=28% Similarity=0.388 Sum_probs=53.3
Q ss_pred EEeCCcceEEEeccccCCCCCCCcccCCCEEcC----CCEEEEEEecCeeeeeecCCCeEEEEE----------------
Q 023091 203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKE----GQTIGYLDQFGTELPVKSDVAGEVLKL---------------- 262 (287)
Q Consensus 203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~----GqvL~iIEamK~~~eV~Ap~sG~Vvei---------------- 262 (287)
.|.||+.|++..- -++.|.+-. |+.+++.-. ...|+||++|+|..+
T Consensus 14 ~i~aP~~G~vv~l-----------~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~e 79 (162)
T 1ax3_A 14 VFVSPITGEIHPI-----------TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGRE 79 (162)
T ss_dssp SCCCCCSEEEEEG-----------GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCE
T ss_pred EEEecCceEEEEe-----------EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCE
Confidence 4899999999864 456666555 888888776 357899999999988
Q ss_pred -------------------ecCCCCeecCCCeEEEEe
Q 023091 263 -------------------LFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 263 -------------------lv~dGd~Ve~GqpL~~I~ 280 (287)
+|+.||.|..||+|+++.
T Consensus 80 vLiHIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 80 ILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp EEEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEEC
T ss_pred EEEEECccchhcCCCccEEEEeCCCEEcCCCEEEEEC
Confidence 899999999999999886
No 51
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=97.00 E-value=0.00091 Score=48.03 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=30.6
Q ss_pred eeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 250 PVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 250 eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
.|.|+.+|+|.+++++.|+.|..||+|++|+..
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 33 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESM 33 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEECC
Confidence 478999999999999999999999999999854
No 52
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=96.87 E-value=0.0015 Score=46.96 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=31.4
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|.|+.+|+|.+++++.|+.|..||+|++|+..
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 39 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAM 39 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEecc
Confidence 4689999999999999999999999999999853
No 53
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=96.87 E-value=0.0045 Score=57.50 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=56.0
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe----cCeeeeeecCCCeEEEEEecCCCCeecCCCeEE
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ----FGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI 277 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa----mK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~ 277 (287)
..++||..|.|+. +++.|+.|++||+|+.|-. +....+|+||.+|.|.-.. ..-.|..|+.||
T Consensus 258 ~~~~a~~~G~~~~-----------~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l~ 324 (332)
T 2qj8_A 258 DQLKSPSPGIFEP-----------RCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEVA 324 (332)
T ss_dssp GEEECSSSEEEEE-----------CSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEEE
T ss_pred eEEeCCCCeEEEE-----------eCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEEE
Confidence 4789999998873 5889999999999999965 5567899999999997665 556788999999
Q ss_pred EEec
Q 023091 278 AVLP 281 (287)
Q Consensus 278 ~I~p 281 (287)
.|-.
T Consensus 325 ~ia~ 328 (332)
T 2qj8_A 325 ILAR 328 (332)
T ss_dssp EEEE
T ss_pred EEee
Confidence 8853
No 54
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=96.75 E-value=0.0018 Score=47.19 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=31.5
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|.|+.+|+|.++++++|+.|..||+|+.|+..
T Consensus 9 ~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~ 42 (77)
T 1dcz_A 9 GEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAM 42 (77)
T ss_dssp SEEEBSSSCEEEEECCCTTCEECTTSEEEEEEET
T ss_pred eEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEcc
Confidence 5689999999999999999999999999999853
No 55
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=96.60 E-value=0.0025 Score=50.13 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=31.5
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|.|+++|+|.++++++|+.|..||+|++|...
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence 4689999999999999999999999999999864
No 56
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=96.55 E-value=0.0017 Score=49.02 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=31.5
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|.||.+|+|.++++++|+.|+.||+|+.|+..
T Consensus 6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~ 39 (84)
T 2kcc_A 6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVM 39 (84)
T ss_dssp TEECCSSSCCEEEESSCTTEEECTTCEEEEEECS
T ss_pred ceEECCCCEEEEEEECCCCCEECCCCEEEEEEec
Confidence 4699999999999999999999999999999853
No 57
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=96.25 E-value=0.005 Score=54.62 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=39.4
Q ss_pred CCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 229 EGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 229 vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
.|+.-..=..-|.|+... ...|.++++|+|.++++++||.|..||+|++|..
T Consensus 4 ~~~~~~~v~~~G~v~~~~-~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~ 55 (277)
T 2f1m_A 4 TEPLQITTELPGRTSAYR-IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP 55 (277)
T ss_dssp ------CCEEEEEEECSE-EEEECCSSCEEEEEECSCTTCEECTTSCSEEECC
T ss_pred eeccceEEEEEEEEEeee-EEEEEccccEEEEEEEcCCCCEecCCCEEEEECc
Confidence 344344445567788753 4679999999999999999999999999999975
No 58
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=96.03 E-value=0.0054 Score=47.53 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=32.0
Q ss_pred eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
...|.|+.+|+|.++++++|+.|..||+|++|+..
T Consensus 14 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~ 48 (99)
T 2ejm_A 14 QGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAM 48 (99)
T ss_dssp CSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESS
T ss_pred ceEEecCCCEEEEEEECCCCCEECCCCEEEEEEcc
Confidence 35689999999999999999999999999999854
No 59
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=95.92 E-value=0.0048 Score=47.47 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=31.1
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|.|+.+|+|.+++++.|+.|..||+|++|+..
T Consensus 26 ~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~ 59 (94)
T 2jku_A 26 SVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAM 59 (94)
T ss_dssp CCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC-
T ss_pred eEEECCCCEEEEEEECCCCCEEcCCCEEEEEecc
Confidence 5689999999999999999999999999999853
No 60
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=95.82 E-value=0.011 Score=52.17 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=41.8
Q ss_pred CCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe-----------------------------cCCCCeec
Q 023091 221 KKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL-----------------------------FDDGDAVG 271 (287)
Q Consensus 221 p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil-----------------------------v~dGd~Ve 271 (287)
-++..+|+.|+.|++||+||.=. +|.++++|+|.+.. +++|+.|.
T Consensus 19 yGA~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~k~lP~I~I~d~~G~~~~~Y~LPvgA~l~~~V~dG~~V~ 92 (193)
T 2xha_A 19 PKAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVK 92 (193)
T ss_dssp TTCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTSSCEEEEEEEGGGCCCTTCCTTCEEC
T ss_pred CCCEEEECCCCEEcCCCEEEEeC------cEEEccCEEEEeeccCcEEEEEcCCCCEeEEEEcCCCCEEEEEcCCCCEEc
Confidence 36777899999999999999654 89999999987544 67777788
Q ss_pred CCCeEE
Q 023091 272 FGDPLI 277 (287)
Q Consensus 272 ~GqpL~ 277 (287)
.|++|+
T Consensus 93 ~GdvLA 98 (193)
T 2xha_A 93 QGLPLS 98 (193)
T ss_dssp TTSBSS
T ss_pred CCCEEe
Confidence 787775
No 61
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=95.78 E-value=0.0071 Score=44.48 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=31.1
Q ss_pred eeeecCCCeEEEEE-------ecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKL-------LFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vvei-------lv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|.||..|+|.++ +++.|+.|..||+|++|+..
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~ 45 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAM 45 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEET
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEec
Confidence 36899999999998 99999999999999999854
No 62
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=95.74 E-value=0.011 Score=53.84 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=38.4
Q ss_pred CEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 237 QTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 237 qvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..-|.|++.. ...|.++++|+|.++++++|+.|..||+|++|.+.
T Consensus 21 ~~~G~v~~~~-~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 21 LATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp EEEEEEEESS-EEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred EEEEEEEeeE-EEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence 3456777664 46899999999999999999999999999999753
No 63
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=95.65 E-value=0.014 Score=53.47 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=39.6
Q ss_pred CEEEEEEec-CeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 237 QTIGYLDQF-GTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 237 qvL~iIEam-K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..-|.|++. .-...|.++++|+|.++++++|+.|..||+|++|.+.
T Consensus 45 ~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 91 (359)
T 3lnn_A 45 NLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp EEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred EEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 345677764 4567899999999999999999999999999999864
No 64
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=95.29 E-value=0.01 Score=43.37 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=27.5
Q ss_pred cCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 253 SDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 253 Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
++.+|+|.++++++||.|..||+|+.|+..
T Consensus 12 ~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~ 41 (77)
T 2l5t_A 12 GVTEGEIVRWDVKEGDMVEKDQDLVEVMTD 41 (77)
T ss_dssp SCCCEEEEECSCCTTCEECSCCCCCEEESS
T ss_pred CCccEEEEEEEeCCCCEECCCCEEEEEEcc
Confidence 468999999999999999999999999864
No 65
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=95.01 E-value=0.014 Score=54.38 Aligned_cols=43 Identities=33% Similarity=0.495 Sum_probs=36.5
Q ss_pred EEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 238 TIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 238 vL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|.|++.. ...|.++++|+|.++++++|+.|..||+|++|.+
T Consensus 34 ~~G~v~~~~-~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~ 76 (369)
T 1vf7_A 34 LPGRTNAFR-IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP 76 (369)
T ss_dssp EEEECEESC-EEEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred EEEEEEeee-EEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 345666643 4679999999999999999999999999999975
No 66
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=95.00 E-value=0.038 Score=41.53 Aligned_cols=28 Identities=21% Similarity=0.257 Sum_probs=26.1
Q ss_pred CCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 255 VAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 255 ~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|+|.+++++.||.|..||+|+.|+..
T Consensus 18 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~ 45 (87)
T 3crk_C 18 TMGTVQRWEKKVGEKLSEGDLLAEIETD 45 (87)
T ss_dssp CEEEEEEECSCTTCEECTTCEEEEEECS
T ss_pred CcEEEEEEEcCCCCEEcCCCEEEEEECC
Confidence 6899999999999999999999999864
No 67
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=94.95 E-value=0.063 Score=47.04 Aligned_cols=65 Identities=20% Similarity=0.246 Sum_probs=50.2
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEE----cCCCEEEEEEecCeeeeeecCCCeEEE-----------------
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVI----KEGQTIGYLDQFGTELPVKSDVAGEVL----------------- 260 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~V----k~GqvL~iIEamK~~~eV~Ap~sG~Vv----------------- 260 (287)
..|.||+.|.+..- -++-|.| --|+-++++=.. ..|.||++|+|.
T Consensus 35 ~~i~aPv~G~vi~L-----------~eV~D~vFs~~~mGdG~AI~P~~---g~v~AP~dG~V~~vfpT~HAigi~s~~G~ 100 (183)
T 3our_B 35 IEIIAPLSGEIVNI-----------EDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVNGTIGKIFETNHAFSIESDDGV 100 (183)
T ss_dssp EEEECSSCEEEEEG-----------GGSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSC
T ss_pred eEEEeecceEEEEc-----------hhCcChHhcccCccCeEEEEcCC---CEEEeCCCeEEEEECCCCCEEEEEeCCCC
Confidence 57999999999864 3444433 237888876543 479999999887
Q ss_pred ------------------EEecCCCCeecCCCeEEEEe
Q 023091 261 ------------------KLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 261 ------------------eilv~dGd~Ve~GqpL~~I~ 280 (287)
+.+|++||.|..||+|+++.
T Consensus 101 EvLIHIGiDTV~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD 138 (183)
T 3our_B 101 ELFVHFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFD 138 (183)
T ss_dssp EEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred EEEEEecccccccCCccceEEEeCcCEEcCCCEEEEEC
Confidence 56688999999999999875
No 68
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=94.88 E-value=0.028 Score=44.56 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=30.5
Q ss_pred CeeeeeecC------CCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 246 GTELPVKSD------VAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 246 K~~~eV~Ap------~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
-|+.+|+.| ..|+|.+++++.||.|..||+|+.|+..
T Consensus 5 p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~ 47 (108)
T 2dne_A 5 SSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETD 47 (108)
T ss_dssp CCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECS
T ss_pred ccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcC
Confidence 344555555 5899999999999999999999999864
No 69
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=94.87 E-value=0.035 Score=42.57 Aligned_cols=28 Identities=21% Similarity=0.206 Sum_probs=26.2
Q ss_pred CCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 255 VAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 255 ~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|+|.+++++.||.|..||+|+.|+..
T Consensus 17 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~ 44 (93)
T 1k8m_A 17 REVTVKEWYVKEGDTVSQFDSICEVQSD 44 (93)
T ss_dssp CCEEEEEECCCTTCEECSSSCCEEEECS
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEEcC
Confidence 6899999999999999999999999854
No 70
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=94.84 E-value=0.031 Score=40.86 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=30.6
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa 244 (287)
...|+||..|++.+. ++++||.|..|+.|+.|+.
T Consensus 43 ~~~i~Ap~~G~v~~~----------~v~~G~~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 43 SMEVPAPFAGVVKEL----------KVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp CEEEEBSSCEEEEEC----------CCCTTCEECTTCCCEEEES
T ss_pred eEEEeCCCCEEEEEE----------ecCCCCEECCCCEEEEEEc
Confidence 578999999999875 7899999999999999974
No 71
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=94.79 E-value=0.031 Score=53.25 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=43.2
Q ss_pred CCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe-----------------------------cCCCCeec
Q 023091 221 KKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL-----------------------------FDDGDAVG 271 (287)
Q Consensus 221 p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil-----------------------------v~dGd~Ve 271 (287)
-++..+|+.||.|++||+||.=+ +|.++++|+|.+.. ++||+.|.
T Consensus 59 yga~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~ 132 (352)
T 2xhc_A 59 PKAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVK 132 (352)
T ss_dssp TTCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEEC
T ss_pred CCCEEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEc
Confidence 46777899999999999999865 88889999886543 78899999
Q ss_pred CCCeEE
Q 023091 272 FGDPLI 277 (287)
Q Consensus 272 ~GqpL~ 277 (287)
.|++|+
T Consensus 133 ~G~vla 138 (352)
T 2xhc_A 133 QGLPLS 138 (352)
T ss_dssp TTCBSB
T ss_pred cCcEEe
Confidence 998887
No 72
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=94.45 E-value=0.022 Score=41.72 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=27.2
Q ss_pred cCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 253 SDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 253 Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
++.+|+|.++++++||.|..||+|+.|+..
T Consensus 12 ~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~ 41 (79)
T 1ghj_A 12 SIADGTVATWHKKPGEAVKRDELIVDIETD 41 (79)
T ss_dssp SCSCEEECCCSSCTTSEECSSCEEEEEECS
T ss_pred CCCCEEEEEEEcCCCCEECCCCEEEEEEcc
Confidence 357999999999999999999999999854
No 73
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=94.40 E-value=0.012 Score=54.05 Aligned_cols=54 Identities=26% Similarity=0.403 Sum_probs=42.7
Q ss_pred ccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 227 CKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 227 V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
|+.|+.-..=..-|.|+... ...|.++++|+|.++++++|+.|..||+|++|..
T Consensus 12 v~~~~~~~~v~~~G~v~~~~-~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~ 65 (369)
T 4dk0_A 12 VKRGNIEKNVVATGSIESIN-TVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDS 65 (369)
T ss_dssp CCEECCCCCCEEEEEEECSS-CCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCC
T ss_pred EEecceeEEEEEeEEEEeee-eEEEecCCCcEEEEEEECCCCEECCCCEEEEEcC
Confidence 34444444445567777654 3679999999999999999999999999999975
No 74
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=94.40 E-value=0.0034 Score=47.13 Aligned_cols=34 Identities=26% Similarity=0.229 Sum_probs=30.4
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
.+|++|.-|+|.+++++.|+.|..||+|+.|+..
T Consensus 3 ~~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~~ 36 (85)
T 2k7v_A 3 KEVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGD 36 (85)
T ss_dssp SCCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSCC
T ss_pred cEEECCCeEEEEEEEcCCCCEEcCCCEEEEEEcc
Confidence 5688888899999999999999999999998753
No 75
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=94.39 E-value=0.03 Score=41.18 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=29.2
Q ss_pred eeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 250 PVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 250 eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
.+-++..|+|.+++++.||.|..||+|+.|+..
T Consensus 9 ~~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~ 41 (81)
T 1gjx_A 9 DIGGHENVDIIAVEVNVGDTIAVDDTLITLETD 41 (81)
T ss_dssp CCSSCSSEEEEEECCCSSCBCCSSCCCEEEECS
T ss_pred CCCCCCcEEEEEEEcCCCCEECCCCEEEEEEeC
Confidence 344678999999999999999999999999854
No 76
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=94.39 E-value=0.05 Score=46.21 Aligned_cols=76 Identities=12% Similarity=0.112 Sum_probs=47.2
Q ss_pred eEEeCCcceEEEeccc-------------------------cCCCCCCCcccCCCEEcCCCEEEEEEecC---------e
Q 023091 202 VLVFSPTVGSFRRNRT-------------------------VKGKKQSPICKEGDVIKEGQTIGYLDQFG---------T 247 (287)
Q Consensus 202 ~~V~AP~vGtf~~~ps-------------------------p~~p~~~p~V~vGd~Vk~GqvL~iIEamK---------~ 247 (287)
..|+||..|++...-. -.|..-..+|++||+|++||.|+.+.-.. +
T Consensus 45 ~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t 124 (154)
T 2gpr_A 45 NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKS 124 (154)
T ss_dssp SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCE
T ss_pred CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeE
Confidence 4799999999875310 01122235899999999999999987322 2
Q ss_pred eeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
+.-|+. .+ +..+....+..|..|+.|+.++
T Consensus 125 ~vvvtn-~~--~~~~~~~~~~~v~~g~~~~~~~ 154 (154)
T 2gpr_A 125 PIIFTN-NG--GKTLEIVKMGEVKQGDVVAILK 154 (154)
T ss_dssp EEEEEE-CS--SCCCSCBCCEEECTTCEEEEEC
T ss_pred EEEEEC-CC--cceEEEccCceEcCCCEEEEeC
Confidence 222222 11 1123333456788899998763
No 77
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=94.26 E-value=0.046 Score=52.01 Aligned_cols=46 Identities=22% Similarity=0.138 Sum_probs=37.8
Q ss_pred CEEEEEEec-CeeeeeecCCCeEEEEEec-CCCCeecCCCeEEEEecC
Q 023091 237 QTIGYLDQF-GTELPVKSDVAGEVLKLLF-DDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 237 qvL~iIEam-K~~~eV~Ap~sG~Vveilv-~dGd~Ve~GqpL~~I~p~ 282 (287)
...+.|+.. .-...|.++++|+|.+++| ++||.|..||+|++|...
T Consensus 109 ~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~ 156 (413)
T 3ne5_B 109 SFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP 156 (413)
T ss_dssp EEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECC
T ss_pred EEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCH
Confidence 345666642 3447799999999999998 999999999999999843
No 78
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.22 E-value=0.047 Score=42.38 Aligned_cols=28 Identities=32% Similarity=0.542 Sum_probs=26.0
Q ss_pred CCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 255 VAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 255 ~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|+|.+++++.||.|..||+|+.|+..
T Consensus 20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie~~ 47 (98)
T 2dnc_A 20 EEGNIVKWLKKEGEAVSAGDALCEIETD 47 (98)
T ss_dssp SEECEEEESSCTTCEECTTSEEEEEECS
T ss_pred ccEEEEEEEcCCCCEeCCCCEEEEEEcc
Confidence 5899999999999999999999999864
No 79
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=94.15 E-value=0.071 Score=38.96 Aligned_cols=34 Identities=35% Similarity=0.410 Sum_probs=30.3
Q ss_pred ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe
Q 023091 201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa 244 (287)
...|+||..|++... ++++|+.|..|+.|+.|+.
T Consensus 41 ~~~i~Ap~~G~v~~~----------~v~~G~~V~~g~~l~~i~~ 74 (79)
T 1iyu_A 41 SMEVPSPKAGVVKSV----------SVKLGDKLKEGDAIIELEP 74 (79)
T ss_dssp EEEEECSSSSEEEEE----------SCCTTCEEETTSEEEEEEC
T ss_pred EEEEECCCCEEEEEE----------EeCCCCEECCCCEEEEEec
Confidence 368999999999875 7899999999999999875
No 80
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=93.72 E-value=0.088 Score=43.26 Aligned_cols=28 Identities=21% Similarity=0.257 Sum_probs=25.9
Q ss_pred CCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 255 VAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 255 ~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|+|.+++++.||.|..||+|+.|+..
T Consensus 40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~ 67 (128)
T 1y8o_B 40 TMGTVQRWEKKVGEKLSEGDLLAEIETD 67 (128)
T ss_dssp SEEEEEEECSCTTCEECTTCEEEEEECS
T ss_pred ccEEEEEEecCCCCEecCCCEEEEEEcC
Confidence 5799999999999999999999999854
No 81
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=93.07 E-value=0.041 Score=48.59 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=42.9
Q ss_pred CCCCCc--ccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEE--------------------------E--ecCCCCee
Q 023091 221 KKQSPI--CKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLK--------------------------L--LFDDGDAV 270 (287)
Q Consensus 221 p~~~p~--V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vve--------------------------i--lv~dGd~V 270 (287)
.++-.. |+.|+.|+.||+|+ | ...|-|+.+|+|.= + +|.+||.|
T Consensus 77 vgA~l~~~V~dG~~V~~GdvLA-----K-d~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V 150 (193)
T 2xha_A 77 ESAGIEPGLRVGTKVKQGLPLS-----K-NEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEV 150 (193)
T ss_dssp GGGCCCTTCCTTCEECTTSBSS-----T-TSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEE
T ss_pred CCCEEEEEcCCCCEEcCCCEEe-----c-CCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEE
Confidence 366777 99999999999999 3 25678889998752 3 89999999
Q ss_pred cCCCeEEE
Q 023091 271 GFGDPLIA 278 (287)
Q Consensus 271 e~GqpL~~ 278 (287)
+.|++|..
T Consensus 151 ~~Ge~L~D 158 (193)
T 2xha_A 151 KQGEMLAE 158 (193)
T ss_dssp CTTCEEEC
T ss_pred CCCCCccc
Confidence 99999984
No 82
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=93.01 E-value=0.12 Score=44.71 Aligned_cols=40 Identities=25% Similarity=0.208 Sum_probs=35.8
Q ss_pred cccCCCEEcCCCEEEEEEecCeee-eeecCCCeEEEEEecC
Q 023091 226 ICKEGDVIKEGQTIGYLDQFGTEL-PVKSDVAGEVLKLLFD 265 (287)
Q Consensus 226 ~V~vGd~Vk~GqvL~iIEamK~~~-eV~Ap~sG~Vveilv~ 265 (287)
++.+|+.|.+|+.|+.|.+.|... -++||++|+|+-+.--
T Consensus 115 i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~ 155 (169)
T 3d4r_A 115 IMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEI 155 (169)
T ss_dssp CCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEE
T ss_pred EcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEec
Confidence 789999999999999999999764 6999999999987643
No 83
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=92.37 E-value=0.028 Score=41.45 Aligned_cols=29 Identities=21% Similarity=0.153 Sum_probs=26.3
Q ss_pred CCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 254 DVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 254 p~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..+|+|.+++++.||.|..||+|+.|+..
T Consensus 14 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~ 42 (80)
T 1pmr_A 14 VADATVATWHKKPGDAVVRDEVLVEIETD 42 (80)
T ss_dssp CSCEECCBCCCCTTCCBSSSCCBCBCCSS
T ss_pred CccEEEEEEECCCcCEECCCCEEEEEEcc
Confidence 36899999999999999999999999753
No 84
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=92.14 E-value=0.14 Score=52.17 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=32.1
Q ss_pred eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
...|+||..|+|++++|++||.|+.||+|+.|+..
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEam 646 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAM 646 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTCEECTTCEEEEEECS
T ss_pred CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEec
Confidence 35699999999999999999999999999999853
No 85
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=91.88 E-value=0.24 Score=43.11 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=40.6
Q ss_pred CCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCee
Q 023091 221 KKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAV 270 (287)
Q Consensus 221 p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~V 270 (287)
.++-.+|+.||.|++||+||.. ++-..+|-++++|+|.=..+.+|..+
T Consensus 60 yGa~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~ 107 (190)
T 2auk_A 60 YGAVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTI 107 (190)
T ss_dssp TTCEESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTE
T ss_pred CCCEEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcce
Confidence 4778899999999999999965 67788999999999987777776543
No 86
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=90.71 E-value=0.29 Score=45.91 Aligned_cols=64 Identities=9% Similarity=0.023 Sum_probs=48.8
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
..|.+|..|.+...+ +.++.|+.|++||+|+.+-. .+|+++.+|.+.-. . .-.|..|+.+++|-
T Consensus 264 ~~v~a~~~g~~~~~~--------~~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~~--p-~p~V~~G~~~~~i~ 327 (350)
T 2bco_A 264 RTIVRLHDDFDFMFD--------DNVENFTSFVHGEVFGHDGD----KPLMAKNDNEAIVF--P-NRHVAIGQRAALMV 327 (350)
T ss_dssp EEEECCSSSEEESSC--------TTCCBTEECCTTCEEEEETT----EEEECSSSSCEEES--C-CTTCCTTSEEEEEE
T ss_pred EEEEcCCCCeEEecc--------ccccCCCEeCCCCEEEEECC----EEEEeCCCCEEEEe--c-CCCCCCCcEEEEEE
Confidence 467888777665332 35799999999999999843 78999999987643 3 46788899777664
No 87
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=89.34 E-value=0.68 Score=39.49 Aligned_cols=42 Identities=26% Similarity=0.382 Sum_probs=30.8
Q ss_pred eEEeCCcceEEEeccc-------------------------cCCCCCCCcccCCCEEcCCCEEEEEE
Q 023091 202 VLVFSPTVGSFRRNRT-------------------------VKGKKQSPICKEGDVIKEGQTIGYLD 243 (287)
Q Consensus 202 ~~V~AP~vGtf~~~ps-------------------------p~~p~~~p~V~vGd~Vk~GqvL~iIE 243 (287)
..|+||..|++...-. -.|..-..+|++||+|++||.|+.+.
T Consensus 50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (161)
T 1f3z_A 50 NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD 116 (161)
T ss_dssp SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence 3789999999865410 01122344899999999999999987
No 88
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=89.00 E-value=0.29 Score=50.60 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=31.3
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|.||..|+|.+++|+.||.|..||+|+.|+.
T Consensus 650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEa 682 (718)
T 3bg3_A 650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSA 682 (718)
T ss_dssp SCEECSSCEEEEEECSCTTCCBCTTCCCEEEES
T ss_pred ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEec
Confidence 469999999999999999999999999999985
No 89
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=88.68 E-value=0.39 Score=51.96 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=31.8
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|.||..|+|.+++|+.||.|+.||+|+.|+..
T Consensus 1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ieam 1111 (1150)
T 3hbl_A 1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITEAM 1111 (1150)
T ss_dssp SEEECSSSEEEEEECCCTTCEECTTCEEEEEESS
T ss_pred ceeecCceEEEEEEEeCCCCEECCCCEEEEEEec
Confidence 5799999999999999999999999999999854
No 90
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=87.85 E-value=0.48 Score=51.74 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=31.5
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..|.||..|+|.+++|+.||.|+.||+|+.|+..
T Consensus 1168 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEam 1201 (1236)
T 3va7_A 1168 ELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAM 1201 (1236)
T ss_dssp EEEECSSCEEEEEESSCTTCEECSSCEEEEEEET
T ss_pred cEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEec
Confidence 4599999999999999999999999999999854
No 91
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=87.37 E-value=0.19 Score=47.78 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=38.4
Q ss_pred CCCCCc--ccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEE------------------E----------EecCCCCee
Q 023091 221 KKQSPI--CKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVL------------------K----------LLFDDGDAV 270 (287)
Q Consensus 221 p~~~p~--V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vv------------------e----------ilv~dGd~V 270 (287)
.++-.. |+.|+.|+.||+|+ | ...|-|+++|+|. + ++|.+||.|
T Consensus 117 ~ga~l~~~v~~g~~v~~G~vla-----k-~~aiiaeidG~V~fg~~kr~i~i~~~~g~~~eylip~~~~k~~~v~~Gd~V 190 (352)
T 2xhc_A 117 ESAGIEPGLRVGTKVKQGLPLS-----K-NEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEV 190 (352)
T ss_dssp GGGCBCTTCCTTCEECTTCBSB-----S-SSSCBCCSCEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEE
T ss_pred CCcEEEEecCCCCEEccCcEEe-----c-CceEEeccceEEEECCcEEEEEEECCCCCEEEEEEcCCCCcCeeeCCCCEE
Confidence 366677 99999999999887 2 2446666666654 2 237789999
Q ss_pred cCCCeEEE
Q 023091 271 GFGDPLIA 278 (287)
Q Consensus 271 e~GqpL~~ 278 (287)
+.|++|..
T Consensus 191 ~~G~~l~d 198 (352)
T 2xhc_A 191 KQGEMLAE 198 (352)
T ss_dssp CTTCEEEC
T ss_pred eCCCCccc
Confidence 99999873
No 92
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=86.23 E-value=0.14 Score=52.18 Aligned_cols=33 Identities=18% Similarity=0.417 Sum_probs=0.0
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|+||..|+|++++|++||.|+.||+|+.|+.
T Consensus 603 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEa 635 (675)
T 3u9t_A 603 GGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEA 635 (675)
T ss_dssp ---------------------------------
T ss_pred CeEECCCCEEEEEEEeCCCCEEcCCCEEEEEEe
Confidence 469999999999999999999999999999985
No 93
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=85.58 E-value=0.8 Score=50.50 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=30.9
Q ss_pred CCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEE
Q 023091 222 KQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVL 260 (287)
Q Consensus 222 ~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vv 260 (287)
++-.+|+.||.|++||+||.. +.-..+|-++++|+|.
T Consensus 1000 gs~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~ 1036 (1407)
T 3lu0_D 1000 GAVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVR 1036 (1407)
T ss_dssp TCEESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEE
T ss_pred CCEEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEE
Confidence 566789999999999999986 4556789999999774
No 94
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=84.74 E-value=0.68 Score=50.14 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=28.2
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|.||..|+|.+++++.||.|+.||+|+.|+.
T Consensus 1096 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iEa 1128 (1165)
T 2qf7_A 1096 AHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEA 1128 (1165)
T ss_dssp TEEECSSCEEEEEECCSSCCCC---CEEEEEEC
T ss_pred ceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEEc
Confidence 469999999999999999999999999999984
No 95
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=84.36 E-value=0.5 Score=40.32 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=30.8
Q ss_pred eEEeCCcceEEEeccc-------------------------cCCCCCCCcccCCCEEcCCCEEEEEE
Q 023091 202 VLVFSPTVGSFRRNRT-------------------------VKGKKQSPICKEGDVIKEGQTIGYLD 243 (287)
Q Consensus 202 ~~V~AP~vGtf~~~ps-------------------------p~~p~~~p~V~vGd~Vk~GqvL~iIE 243 (287)
..|+||..|++...-. -.|..-..+|+.||+|++||.|+.+.
T Consensus 50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 50 GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEEC
T ss_pred CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCccEEEEeCCCEEcCCCEEEEEC
Confidence 3789999999875410 01122334899999999999999987
No 96
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=78.63 E-value=1.6 Score=38.10 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=20.4
Q ss_pred CCCCCCcccCCCEEcCCCEEEEEE
Q 023091 220 GKKQSPICKEGDVIKEGQTIGYLD 243 (287)
Q Consensus 220 ~p~~~p~V~vGd~Vk~GqvL~iIE 243 (287)
|..-.++|++||+|++||.|+.+.
T Consensus 115 G~gF~~~V~~Gd~Vk~Gd~L~~fD 138 (183)
T 3our_B 115 GEGFTRIAEEGQTVKAGDTVIEFD 138 (183)
T ss_dssp TTTEEECSCTTCEECTTCEEEEEC
T ss_pred CccceEEEeCcCEEcCCCEEEEEC
Confidence 344567899999999999999987
No 97
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=68.42 E-value=7.2 Score=36.26 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=30.3
Q ss_pred CeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 246 GTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 246 K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
+-..-++|+.+| +.+..++.|+.|+.||+|+.|...
T Consensus 265 ~~~~~v~A~~~G-~~~~~~~~g~~V~~G~~La~i~d~ 300 (354)
T 3cdx_A 265 EADAYVMAPRTG-LFEPTHYVGEEVRTGETAGWIHFV 300 (354)
T ss_dssp CGGGEEECSSCE-EEEESCCTTCEECTTSEEEEEECT
T ss_pred CCcEEEECCCCE-EEEEeCCCCCEeCCCCEEEEEECC
Confidence 344568999999 567789999999999999999864
No 98
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=66.91 E-value=1.2 Score=43.20 Aligned_cols=35 Identities=37% Similarity=0.410 Sum_probs=0.0
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG 246 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK 246 (287)
..|.||..|++.+. +|++||.|..||+|++|+...
T Consensus 46 ~~i~ap~~G~v~~i----------~v~~G~~V~~G~~l~~i~~~~ 80 (428)
T 3dva_I 46 VEIPSPVKGKVLEI----------LVPEGTVATVGQTLITLDAPG 80 (428)
T ss_dssp ---------------------------------------------
T ss_pred EEEecCCCeEEEEE----------EeCCCCEeCCCCEEEEEecCC
Confidence 57999999999764 899999999999999998543
No 99
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=66.65 E-value=5.6 Score=36.79 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=29.0
Q ss_pred eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
..-|+|+.+|.+ +-.++-||.|+.||+|++|...
T Consensus 257 ~~~v~A~~~Gl~-~~~v~~Gd~V~~G~~la~I~dp 290 (331)
T 3na6_A 257 DCYLFSEHDGLF-EIMIDLGEPVQEGDLVARVWSP 290 (331)
T ss_dssp CCCEECSSCEEE-EESSCTTCEECTTCEEEEEECS
T ss_pred cEEEeCCCCeEE-EEcCCCCCEEcCCCEEEEEEcC
Confidence 456899999965 4589999999999999999864
No 100
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=65.96 E-value=5.6 Score=37.51 Aligned_cols=33 Identities=27% Similarity=0.234 Sum_probs=29.5
Q ss_pred eeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..-|+||.+|.+. ..++-|+.|+.||+|++|..
T Consensus 290 ~~~v~A~~~Gl~~-~~v~lGd~V~kG~~la~I~d 322 (368)
T 3fmc_A 290 YRKFHAPKAGMVE-YLGKVGVPMKATDPLVNLLR 322 (368)
T ss_dssp EEEEECSSCEEEE-ECSCTTCCBCTTCEEEEEEC
T ss_pred cEEEecCCCEEEE-EeCCCCCEeCCCCEEEEEEc
Confidence 3469999999775 88999999999999999987
No 101
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=64.97 E-value=5.5 Score=34.36 Aligned_cols=44 Identities=20% Similarity=0.127 Sum_probs=35.2
Q ss_pred CEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCCCC
Q 023091 231 DVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHD 285 (287)
Q Consensus 231 d~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~~~ 285 (287)
-.+++|+.||.+++ .|..+-+.+..|+.|..|+.|+.|..-..+
T Consensus 94 ~~lkkGt~L~lvpa-----------eG~~V~~i~~~G~rV~kgd~lA~i~T~KGE 137 (169)
T 3d4r_A 94 TYLKAGTKLISVPA-----------EGYKVYPIMDFGFRVLKGYRLATLESKKGD 137 (169)
T ss_dssp EEECTTCBCEEEEE-----------CSSEEEECCCCSEEECTTCEEEEEECTTCC
T ss_pred EEEcCCCEEEEEEe-----------CceEEEEEcCcCcEeccCCeEEEEEecCce
Confidence 34778999999875 455667788899999999999999876543
No 102
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=64.50 E-value=1.4 Score=39.32 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=0.0
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCE-EcCCCEEEEEEe
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDV-IKEGQTIGYLDQ 244 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~-Vk~GqvL~iIEa 244 (287)
..|.||..|++... +|++||. |..|+.|++|+.
T Consensus 47 ~ei~Ap~~G~v~~i----------~v~~G~~~V~~G~~l~~i~~ 80 (229)
T 1zy8_K 47 VTLDASDDGILAKI----------VVEEGSKNIRLGSLIGLIVE 80 (229)
T ss_dssp --------------------------------------------
T ss_pred eEEecCCCeEEEEE----------EecCCCeeecCCCEEEEEec
Confidence 57899999998764 8999997 999999999974
No 103
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=61.88 E-value=11 Score=37.04 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=32.2
Q ss_pred ecCeeeeeecCCCeEE-----------------------------EEEecCCCCeecCCCeEEEEecCCC
Q 023091 244 QFGTELPVKSDVAGEV-----------------------------LKLLFDDGDAVGFGDPLIAVLPSFH 284 (287)
Q Consensus 244 amK~~~eV~Ap~sG~V-----------------------------veilv~dGd~Ve~GqpL~~I~p~~~ 284 (287)
.-+...+|+|+.+|.| +.++++-||.|+.|+||++|.....
T Consensus 368 ~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~~ 437 (474)
T 1uou_A 368 RAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDGP 437 (474)
T ss_dssp CCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESSS
T ss_pred CCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEEcCCh
Confidence 3455567888888887 4567888999999999999986544
No 104
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=56.83 E-value=6.6 Score=33.62 Aligned_cols=21 Identities=10% Similarity=0.210 Sum_probs=18.8
Q ss_pred CCcccCCCEEcCCCEEEEEEe
Q 023091 224 SPICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 224 ~p~V~vGd~Vk~GqvL~iIEa 244 (287)
...|++||.|++||+|+.+-.
T Consensus 84 ~i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 84 QIQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp SCCCCTTCEECTTCEEEEECS
T ss_pred ccccCCCCEEcCCCEEEeecC
Confidence 567999999999999999874
No 105
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=55.59 E-value=16 Score=35.51 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=19.8
Q ss_pred EEecCCCCeecCCCeEEEEecCCC
Q 023091 261 KLLFDDGDAVGFGDPLIAVLPSFH 284 (287)
Q Consensus 261 eilv~dGd~Ve~GqpL~~I~p~~~ 284 (287)
.++.+-||.|+.|+||++|.....
T Consensus 379 ~~~~k~g~~v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 379 VLHKKIGDRVQKGEALATIHSNRP 402 (433)
T ss_dssp EESCCTTCEECTTCEEEEEEESSS
T ss_pred eEeccCCCEECCCCeEEEEEcCCc
Confidence 466788999999999999986543
No 106
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=53.29 E-value=16 Score=35.43 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=19.8
Q ss_pred EEecCCCCeecCCCeEEEEecCCC
Q 023091 261 KLLFDDGDAVGFGDPLIAVLPSFH 284 (287)
Q Consensus 261 eilv~dGd~Ve~GqpL~~I~p~~~ 284 (287)
.++.+-||.|+.|+||++|.....
T Consensus 371 ~~~~k~g~~v~~g~~l~~i~~~~~ 394 (423)
T 2dsj_A 371 YLLKKPGDRVERGEALALVYHRRR 394 (423)
T ss_dssp EESCCTTCEECTTSEEEEEEECSS
T ss_pred eeeccCCCEeCCCCeEEEEEeCCc
Confidence 466788999999999999986543
No 107
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=49.64 E-value=20 Score=34.86 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=17.4
Q ss_pred EEecCCCCeecCCCeEEEEe
Q 023091 261 KLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 261 eilv~dGd~Ve~GqpL~~I~ 280 (287)
.++++-||.|+.||||++|.
T Consensus 382 ~l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 382 VLNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp EESCCTTCEECTTSEEEEEE
T ss_pred EEecCCcCEeCCCCeEEEEe
Confidence 44567899999999999998
No 108
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=47.66 E-value=29 Score=29.50 Aligned_cols=56 Identities=11% Similarity=0.013 Sum_probs=40.5
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|.|+..|++... . |..| +|+-..-..-+.+.. .++.|+.||.|..||.|..+..
T Consensus 49 tpV~A~~~G~V~~~------------~-------G~~V-~I~H~~g~~t~Y~HL----~~i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 49 YSVVAAHAGTVRVL------------S-------RCQV-RVTHPSGWATNYYHM----DQIQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp CEEECSSSEEEEEE------------E-------TTEE-EEECTTSEEEEEESE----ESCCCCTTCEECTTCEEEEECS
T ss_pred CEEEeccCEEEEEE------------C-------CeEE-EEEECCcEEEEEEcC----CccccCCCCEEcCCCEEEeecC
Confidence 47999999998764 1 4443 455555455566653 4678999999999999999875
No 109
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=47.32 E-value=21 Score=32.62 Aligned_cols=33 Identities=24% Similarity=0.096 Sum_probs=28.3
Q ss_pred eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
.-++|+..|.+. -.+++|+.|+.||+|+.+...
T Consensus 258 ~~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~dp 290 (332)
T 2qj8_A 258 DQLKSPSPGIFE-PRCSVMDEVEQGDVVGVLHPM 290 (332)
T ss_dssp GEEECSSSEEEE-ECSCTTCEECTTCEEEEEECT
T ss_pred eEEeCCCCeEEE-EeCCCCCEeCCCCEEEEEECC
Confidence 357899999776 779999999999999999753
No 110
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=46.42 E-value=5.3 Score=32.93 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=28.4
Q ss_pred eeeecCCCeEEEEEec-CCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLF-DDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv-~dGd~Ve~GqpL~~I~p~ 282 (287)
.++.++.-|.|+.+.+ +.|+.|+.|++|+.|+..
T Consensus 37 t~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs~ 71 (136)
T 1zko_A 37 TNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESV 71 (136)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEES
T ss_pred EhhhcccCCCcEEEEecCCCCEEeCCCEEEEEEEc
Confidence 4556677788888887 999999999999999854
No 111
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=45.36 E-value=11 Score=41.84 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=19.4
Q ss_pred CCCCCcccCCCEEcCCCEEEEE
Q 023091 221 KKQSPICKEGDVIKEGQTIGYL 242 (287)
Q Consensus 221 p~~~p~V~vGd~Vk~GqvL~iI 242 (287)
.++-..|+.|+.|+.||+|+.|
T Consensus 1103 ~~a~~~v~~g~~v~~g~vlaki 1124 (1407)
T 3lu0_D 1103 GKAIVQLEDGVQISSGDTLARI 1124 (1407)
T ss_dssp TTCCCCCCSSCEECTTCEEECC
T ss_pred CCcEEEecCCCEeccCceEEec
Confidence 4677889999999999999865
No 112
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=45.19 E-value=9.9 Score=34.20 Aligned_cols=19 Identities=32% Similarity=0.723 Sum_probs=17.5
Q ss_pred cccCCCEEcCCCEEEEEEe
Q 023091 226 ICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 226 ~V~vGd~Vk~GqvL~iIEa 244 (287)
.|++||.|++||+|+.+-.
T Consensus 183 ~V~~G~~V~~Gq~IG~vG~ 201 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYMGD 201 (252)
T ss_dssp SCCTTCEECTTCEEEECBC
T ss_pred cCCCCCEECCCCEEEEECC
Confidence 7999999999999999864
No 113
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=44.32 E-value=10 Score=35.15 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.0
Q ss_pred CCCcccCCCEEcCCCEEEEEEe
Q 023091 223 QSPICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 223 ~~p~V~vGd~Vk~GqvL~iIEa 244 (287)
....|++||.|++||+|+.+-.
T Consensus 249 ~~~~V~~G~~V~~Gq~Ig~~G~ 270 (334)
T 3csq_A 249 SPLPFDVGKKLKKGDLMGHTGI 270 (334)
T ss_dssp SSCCCCTTCEECTTSEEEECBC
T ss_pred CcccCCCcCEECCCCEEEeecC
Confidence 4567999999999999998763
No 114
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=43.54 E-value=43 Score=29.96 Aligned_cols=61 Identities=11% Similarity=0.021 Sum_probs=38.1
Q ss_pred EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091 203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~ 282 (287)
.|.|+..|++...-. . .| -|- +.+|+-..-+.-+.+.. .++.|..|+.|..||.|..+...
T Consensus 95 pV~A~~~G~V~~~g~--------~--~~----~G~-~ViI~Hg~G~~t~Y~HL----~~i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 95 DVSASLSGTVVKAEK--------D--PV----LGY-VVEVEHADGLSTVYQSL----SEVSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp EEECSSCEEEEEEEE--------E--TT----TEE-EEEEECSTTEEEEEEEE----SEESCCTTCEECTTCEEEECBCC
T ss_pred eEEeCcCeEEEEEEe--------c--CC----Cce-EEEEEeCCCEEEEEecC----CccccCCCCEECCCCEEEEeCCc
Confidence 688888888766421 0 01 233 33445444445555553 36788999999999999888654
No 115
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=43.37 E-value=16 Score=35.54 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=18.8
Q ss_pred EEecCCCCeecCCCeEEEEecCC
Q 023091 261 KLLFDDGDAVGFGDPLIAVLPSF 283 (287)
Q Consensus 261 eilv~dGd~Ve~GqpL~~I~p~~ 283 (287)
.++.+-||.|+.|+||++|....
T Consensus 384 ~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 384 TDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp ESCCCTTCEEBTTBCSEEEEESS
T ss_pred eEeccCCCEECCCCeEEEEecCC
Confidence 45577899999999999998653
No 116
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=41.63 E-value=12 Score=33.73 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.7
Q ss_pred CCCcccCCCEEcCCCEEEEEEec
Q 023091 223 QSPICKEGDVIKEGQTIGYLDQF 245 (287)
Q Consensus 223 ~~p~V~vGd~Vk~GqvL~iIEam 245 (287)
....|++||.|++||+|+.+-..
T Consensus 133 ~~i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 133 SEVSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp SEESCCTTCEECTTCEEEECBCC
T ss_pred CccccCCCCEECCCCEEEEeCCc
Confidence 35679999999999999998754
No 117
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=39.90 E-value=62 Score=28.91 Aligned_cols=63 Identities=21% Similarity=0.041 Sum_probs=41.0
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|.|+..|++...-. . .| -|. ..+|+-..-..-+.+..+.. +.|+.||.|..||.|..+..
T Consensus 140 ~pV~A~~~G~V~~~g~--------~--~~----~G~-~V~I~H~~G~~t~Y~HL~~~---~~V~~G~~V~~Gq~IG~vG~ 201 (252)
T 3nyy_A 140 YPVVSMTDGVVTEKGW--------L--EK----GGW-RIGITAPTGAYFYYAHLDSY---AELEKGDPVKAGDLLGYMGD 201 (252)
T ss_dssp SEEECSSCEEEEEEEE--------E--TT----TEE-EEEEECTTSCEEEEEEESEE---CSCCTTCEECTTCEEEECBC
T ss_pred ceEEeccCEEEEEEEe--------c--CC----CCC-EEEEEeCCcEEEEEeeCCCC---CcCCCCCEECCCCEEEEECC
Confidence 4799999999876521 0 01 233 33455444444566654432 38999999999999999875
Q ss_pred C
Q 023091 282 S 282 (287)
Q Consensus 282 ~ 282 (287)
.
T Consensus 202 t 202 (252)
T 3nyy_A 202 S 202 (252)
T ss_dssp C
T ss_pred C
Confidence 4
No 118
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=39.85 E-value=15 Score=27.96 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.5
Q ss_pred EEecCCCCeecCCCeEE
Q 023091 261 KLLFDDGDAVGFGDPLI 277 (287)
Q Consensus 261 eilv~dGd~Ve~GqpL~ 277 (287)
.++|.+||.|+.||+|.
T Consensus 66 ~l~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 66 QLNVFEGERVERGDVIS 82 (84)
T ss_dssp CCSSCTTEEECBSCSSB
T ss_pred ceEeCCCCEECCCCCcc
Confidence 45799999999999874
No 119
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=39.70 E-value=20 Score=29.15 Aligned_cols=34 Identities=26% Similarity=0.214 Sum_probs=28.6
Q ss_pred eeeecCCCeEEEEEec-CCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLF-DDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv-~dGd~Ve~GqpL~~I~p~ 282 (287)
.++..+.-|.|+.+.+ +.|+.|..|++|+.|+..
T Consensus 28 td~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs~ 62 (131)
T 1hpc_A 28 TDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESV 62 (131)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECBTSEEEEEEES
T ss_pred ehhhcccCCCceEEEecCCCCEEeCCCEEEEEEec
Confidence 4456677788999988 999999999999999854
No 120
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=39.20 E-value=13 Score=34.44 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=18.2
Q ss_pred CCcccCCCEEcCCCEEEEEEe
Q 023091 224 SPICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 224 ~p~V~vGd~Vk~GqvL~iIEa 244 (287)
...|++||.|++||+|+.+-.
T Consensus 238 ~i~Vk~Gq~V~~GqvIG~vG~ 258 (291)
T 1qwy_A 238 RLTVSAGDKVKAGDQIAYSGS 258 (291)
T ss_dssp EECCCTTCEECTTCEEEECCC
T ss_pred ccccCCcCEECCCCEEEEECC
Confidence 357999999999999998864
No 121
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=38.85 E-value=14 Score=33.89 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=18.3
Q ss_pred CCcccCCCEEcCCCEEEEEEe
Q 023091 224 SPICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 224 ~p~V~vGd~Vk~GqvL~iIEa 244 (287)
...|++||.|++||+|+.+-.
T Consensus 231 ~i~V~~G~~V~~Gq~IG~vG~ 251 (282)
T 2hsi_A 231 KIDVKLGQQVPRGGVLGKVGA 251 (282)
T ss_dssp EECSCTTCEECTTCEEEECCC
T ss_pred ccccCCcCEECCCCEEEEECC
Confidence 357999999999999998764
No 122
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=38.04 E-value=22 Score=30.57 Aligned_cols=28 Identities=18% Similarity=0.090 Sum_probs=21.2
Q ss_pred EEeccccCCCCCCCcccCCCEEcCCCEEEEEE
Q 023091 212 FRRNRTVKGKKQSPICKEGDVIKEGQTIGYLD 243 (287)
Q Consensus 212 f~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIE 243 (287)
.|.-| .++-..|+.||.|++||+|+.|-
T Consensus 159 ~Y~LP----~ga~i~v~dG~~V~~GdvLArip 186 (190)
T 2auk_A 159 QYFLP----GKAIVQLEDGVQISSGDTLARIP 186 (190)
T ss_dssp EEECC----TTCEESSCTTCEECTTCEEEEEE
T ss_pred EEECC----CCCEEEEcCCCEEcCCCEEEEcc
Confidence 45554 46677888899999999998774
No 123
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=37.20 E-value=64 Score=32.76 Aligned_cols=41 Identities=27% Similarity=0.517 Sum_probs=30.2
Q ss_pred cccCCCEEcCCCEEEEEEecCee-eeeec--CCCeEEEEEecCCCC
Q 023091 226 ICKEGDVIKEGQTIGYLDQFGTE-LPVKS--DVAGEVLKLLFDDGD 268 (287)
Q Consensus 226 ~V~vGd~Vk~GqvL~iIEamK~~-~eV~A--p~sG~Vveilv~dGd 268 (287)
.+++||.|..||+++.+.-.... ..|.. .+.|+|+.| ..|+
T Consensus 130 ~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i--~~g~ 173 (600)
T 3vr4_A 130 TIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI--ESGS 173 (600)
T ss_dssp CSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE--CCEE
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe--cCCc
Confidence 58999999999999998754432 44432 368999988 5554
No 124
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=36.03 E-value=13 Score=28.31 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=20.2
Q ss_pred EEeccccCCCCCCCcccCCCEEcCCCEEE
Q 023091 212 FRRNRTVKGKKQSPICKEGDVIKEGQTIG 240 (287)
Q Consensus 212 f~~~psp~~p~~~p~V~vGd~Vk~GqvL~ 240 (287)
-|..| ......|+.||.|++||.|.
T Consensus 58 eY~Ip----~~~~l~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 58 EEMIP----KWRQLNVFEGERVERGDVIS 82 (84)
T ss_dssp EEECC----TTSCCSSCTTEEECBSCSSB
T ss_pred EEECC----CCCceEeCCCCEECCCCCcc
Confidence 46665 46788999999999999764
No 125
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=35.55 E-value=29 Score=28.06 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=27.8
Q ss_pred eeeecCCCeEEEEEec-CCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLF-DDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv-~dGd~Ve~GqpL~~I~p~ 282 (287)
.+...+.-|.|+.+.+ +.|+.|+.|++|+.|+..
T Consensus 28 t~~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~ 62 (128)
T 1onl_A 28 TDYAQDALGDVVYVELPEVGRVVEKGEAVAVVESV 62 (128)
T ss_dssp CHHHHHHHCSEEEEECBCTTCEECTTCEEEEEEES
T ss_pred ehHHhhcCCCceEEEecCCCCEEeCCCEEEEEEEc
Confidence 4455566788888877 999999999999999854
No 126
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=35.53 E-value=34 Score=33.20 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=32.4
Q ss_pred ceEEeCCcceEEEecc---------------------ccCCCCCCCcccCCCEEcCCCEEEEEEecC
Q 023091 201 YVLVFSPTVGSFRRNR---------------------TVKGKKQSPICKEGDVIKEGQTIGYLDQFG 246 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~p---------------------sp~~p~~~p~V~vGd~Vk~GqvL~iIEamK 246 (287)
...|+||..|.+.... --++-+...++++||.|++||+|+.|-+..
T Consensus 335 ~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 335 TSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp EEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred EEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEEcCC
Confidence 3678888888875321 001122346789999999999999998764
No 127
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=35.19 E-value=34 Score=33.15 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.2
Q ss_pred CCcccCCCEEcCCCEEEEEEecC
Q 023091 224 SPICKEGDVIKEGQTIGYLDQFG 246 (287)
Q Consensus 224 ~p~V~vGd~Vk~GqvL~iIEamK 246 (287)
..++++||.|++||+|+.|-+..
T Consensus 371 ~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 371 YLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp EESCCTTCEECTTSEEEEEEECS
T ss_pred eeeccCCCEeCCCCeEEEEEeCC
Confidence 46789999999999999998764
No 128
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=35.08 E-value=17 Score=33.97 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.2
Q ss_pred CcccCCCEEcCCCEEEEEEec
Q 023091 225 PICKEGDVIKEGQTIGYLDQF 245 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEam 245 (287)
..|++||.|++||+|+.+-.-
T Consensus 284 ~~v~~G~~V~~G~~Ig~~G~t 304 (361)
T 2gu1_A 284 ILVKKGQLVKRGQKIALAGAT 304 (361)
T ss_dssp ECCCTTCEECTTCEEEECCCC
T ss_pred cccCCcCEECCCCEEEEECCC
Confidence 568999999999999998643
No 129
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=34.71 E-value=30 Score=27.93 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=27.6
Q ss_pred eeeecCCCeEEEEEec-CCCCeecCCCeEEEEecC
Q 023091 249 LPVKSDVAGEVLKLLF-DDGDAVGFGDPLIAVLPS 282 (287)
Q Consensus 249 ~eV~Ap~sG~Vveilv-~dGd~Ve~GqpL~~I~p~ 282 (287)
.+...+.-|.|+.+.+ +.|+.|..|++|+.|+..
T Consensus 29 td~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~ 63 (128)
T 3a7l_A 29 TEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESV 63 (128)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEES
T ss_pred ehHHhccCCceEEEEecCCCCEEeCCCEEEEEEec
Confidence 4455566688888877 999999999999999854
No 130
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=33.84 E-value=9 Score=35.55 Aligned_cols=36 Identities=8% Similarity=-0.079 Sum_probs=25.0
Q ss_pred CcccCCCEEcCCCEEEEEEecC-----eeeeeecCCCeEEE
Q 023091 225 PICKEGDVIKEGQTIGYLDQFG-----TELPVKSDVAGEVL 260 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEamK-----~~~eV~Ap~sG~Vv 260 (287)
+.++.|+.|++||+|+.+-... ...+|.+|.+|+|.
T Consensus 277 ~~~~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~ 317 (341)
T 1yw4_A 277 DSVENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKP 317 (341)
T ss_dssp TTCCBTEECCSSCCCC--------CCSSCCEEESCCTTCCS
T ss_pred ecCCCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCcee
Confidence 4679999999999999876542 33469999999764
No 131
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=32.82 E-value=32 Score=33.46 Aligned_cols=43 Identities=14% Similarity=0.039 Sum_probs=30.7
Q ss_pred ceEEeCCcceEEEeccc-------------------c--CCCCCCCcccCCCEEcCCCEEEEEE
Q 023091 201 YVLVFSPTVGSFRRNRT-------------------V--KGKKQSPICKEGDVIKEGQTIGYLD 243 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~ps-------------------p--~~p~~~p~V~vGd~Vk~GqvL~iIE 243 (287)
...|+||..|.+...-. | ++-+...++++||.|++||+|+.|-
T Consensus 338 ~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 338 QIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp EEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEE
T ss_pred EEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCEeCCCCeEEEEe
Confidence 46788888888754311 0 1123356789999999999999987
No 132
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=32.28 E-value=41 Score=33.08 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=33.0
Q ss_pred ceEEeCCcceEEEeccc-----------------c--CCCCCCCcccCCCEEcCCCEEEEEEecC
Q 023091 201 YVLVFSPTVGSFRRNRT-----------------V--KGKKQSPICKEGDVIKEGQTIGYLDQFG 246 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~ps-----------------p--~~p~~~p~V~vGd~Vk~GqvL~iIEamK 246 (287)
...|+||..|.+..... | ++-+...++++||.|++||+|+.|-+..
T Consensus 372 ~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 372 QEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp EEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESS
T ss_pred eEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEEcCC
Confidence 46789999998753210 0 0123457889999999999999998764
No 133
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=31.55 E-value=1.1e+02 Score=27.84 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=41.2
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|.|+..|++...- +.-.-|..| +|+-......+.+..+ ++.|+.||.|..||.|..+..
T Consensus 191 tpV~A~~~G~V~~~g--------------~~~~~G~~V-iI~Hg~G~~t~Y~HL~----~i~V~~G~~V~~Gq~IG~vG~ 251 (282)
T 2hsi_A 191 TPIKAPAAGKVILIG--------------DYFFNGKTV-FVDHGQGFISMFCHLS----KIDVKLGQQVPRGGVLGKVGA 251 (282)
T ss_dssp CEEECSSCEEEEEEE--------------EETTTEEEE-EEEEETTEEEEEEEES----EECSCTTCEECTTCEEEECCC
T ss_pred CeEEeccCeEEEEEE--------------EcCCCCCEE-EEEeCCcEEEEEECCC----ccccCCcCEECCCCEEEEECC
Confidence 478999999987641 111124444 4554444455555543 678999999999999999875
Q ss_pred C
Q 023091 282 S 282 (287)
Q Consensus 282 ~ 282 (287)
.
T Consensus 252 t 252 (282)
T 2hsi_A 252 T 252 (282)
T ss_dssp T
T ss_pred C
Confidence 4
No 134
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=27.97 E-value=32 Score=31.47 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=18.2
Q ss_pred CcccCCCEEcCCCEEEEEEe
Q 023091 225 PICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEa 244 (287)
|+++.|+.|++||+|+.|+.
T Consensus 76 ~~~~dG~~v~~g~~v~~i~G 95 (286)
T 1x1o_A 76 PLVAEGARVAEGTEVARVRG 95 (286)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCCccCCCEEEEEEE
Confidence 57999999999999999983
No 135
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=26.62 E-value=32 Score=31.41 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=18.1
Q ss_pred CcccCCCEEcCCCEEEEEEe
Q 023091 225 PICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEa 244 (287)
|+++.|+.|++||+|+.|+.
T Consensus 75 ~~~~dG~~v~~g~~v~~i~G 94 (284)
T 1qpo_A 75 DRVEDGARVPPGEALMTLEA 94 (284)
T ss_dssp EECCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCEecCCcEEEEEEE
Confidence 47999999999999999983
No 136
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=26.43 E-value=1.6e+02 Score=27.22 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=39.9
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
..|.|+..|++...-. . .| -|..| +|+-......+.+..+ ++.|+.||.|..||.|..+..
T Consensus 243 t~V~A~~~G~V~~~~~--------~--~~----~G~~v-~i~h~~g~~t~Y~hl~----~~~v~~G~~V~~G~~Ig~~G~ 303 (361)
T 2gu1_A 243 APVYSTGDGKVIVVRK--------H--PY----AGNYL-VIEHNSVYKTRYLHLD----KILVKKGQLVKRGQKIALAGA 303 (361)
T ss_dssp CEEECSSSEEEEEEEE--------E--TT----TEEEE-EEECSSSEEEEEEEES----EECCCTTCEECTTCEEEECCC
T ss_pred CeEEEeeCEEEEEeEE--------e--CC----CCeEE-EEEECCCEEEEEeCcC----ccccCCcCEECCCCEEEEECC
Confidence 4688888888776421 0 11 23333 4554444455555533 478999999999999999875
Q ss_pred C
Q 023091 282 S 282 (287)
Q Consensus 282 ~ 282 (287)
.
T Consensus 304 t 304 (361)
T 2gu1_A 304 T 304 (361)
T ss_dssp C
T ss_pred C
Confidence 4
No 137
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=26.20 E-value=29 Score=31.74 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=18.2
Q ss_pred CcccCCCEEcCCCEEEEEEe
Q 023091 225 PICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEa 244 (287)
|+++.|+.|++||+|+.|+.
T Consensus 75 ~~~~dG~~v~~g~~v~~i~G 94 (285)
T 1o4u_A 75 FNVEDGEYLEGTGVIGEIEG 94 (285)
T ss_dssp ESCCTTCEEESCEEEEEEEE
T ss_pred EEcCCCCCcCCCCEEEEEEE
Confidence 47999999999999999983
No 138
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=25.81 E-value=37 Score=31.31 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=18.3
Q ss_pred CcccCCCEEcCCCEEEEEEe
Q 023091 225 PICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEa 244 (287)
|+++.|+.|++||+|+.|+.
T Consensus 79 ~~~~dG~~v~~g~~v~~i~G 98 (287)
T 3tqv_A 79 WLYSDAQKVPANARIFELKG 98 (287)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEeCCCCEeeCCCEEEEEEE
Confidence 58999999999999999983
No 139
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=25.03 E-value=92 Score=31.48 Aligned_cols=37 Identities=30% Similarity=0.595 Sum_probs=27.5
Q ss_pred cccCCCEEcCCCEEEEEEecCeeeee--ecCCCeEEEEE
Q 023091 226 ICKEGDVIKEGQTIGYLDQFGTELPV--KSDVAGEVLKL 262 (287)
Q Consensus 226 ~V~vGd~Vk~GqvL~iIEamK~~~eV--~Ap~sG~Vvei 262 (287)
.+++||.|..||+++.+.--.....| ...+.|+|+++
T Consensus 122 ~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~~i 160 (578)
T 3gqb_A 122 MVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEV 160 (578)
T ss_dssp CCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEEEE
T ss_pred ccccCccccccceeeeecccccceecccCCCcCceeEEe
Confidence 58999999999999998654433433 23478888887
No 140
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=24.68 E-value=39 Score=31.39 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=18.2
Q ss_pred CcccCCCEEcCCCEEEEEEe
Q 023091 225 PICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEa 244 (287)
|+++.|+.|++||+|+.|+.
T Consensus 88 ~~~~dG~~v~~g~~v~~i~G 107 (300)
T 3l0g_A 88 IHKKDGDITGKNSTLVSGEA 107 (300)
T ss_dssp ECCCTTCEECSSCEEEEEEE
T ss_pred EEeCCCCEeeCCCEEEEEEE
Confidence 58999999999999999983
No 141
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=24.16 E-value=31 Score=33.58 Aligned_cols=46 Identities=11% Similarity=0.108 Sum_probs=33.0
Q ss_pred ceEEeCCcceEEEecc---------------------ccCCCCCCCcccCCCEEcCCCEEEEEEecC
Q 023091 201 YVLVFSPTVGSFRRNR---------------------TVKGKKQSPICKEGDVIKEGQTIGYLDQFG 246 (287)
Q Consensus 201 ~~~V~AP~vGtf~~~p---------------------sp~~p~~~p~V~vGd~Vk~GqvL~iIEamK 246 (287)
...|+||..|.+.... --++-+...++++||.|++||+|+.|-+..
T Consensus 340 ~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 340 TKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp EEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESS
T ss_pred EEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEecCC
Confidence 4678899998875321 001123457889999999999999998764
No 142
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=22.45 E-value=49 Score=30.62 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=18.4
Q ss_pred CcccCCCEEcCCCEEEEEEe
Q 023091 225 PICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEa 244 (287)
|++..|+.|++||+|+.|+.
T Consensus 90 ~~~~dG~~v~~g~~l~~v~G 109 (298)
T 3gnn_A 90 WRHREGDRMSADSTVCELRG 109 (298)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCEecCCCEEEEEEe
Confidence 58999999999999999984
No 143
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=22.22 E-value=77 Score=28.86 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.2
Q ss_pred eEEEEEecCCCCeecCCCeEEEEec
Q 023091 257 GEVLKLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 257 G~Vveilv~dGd~Ve~GqpL~~I~p 281 (287)
+.-+++++.||+.|..|++|++|+.
T Consensus 70 ~~~v~~~~~dG~~v~~g~~v~~i~G 94 (284)
T 1qpo_A 70 GYRVLDRVEDGARVPPGEALMTLEA 94 (284)
T ss_dssp SEEEEEECCTTCEECTTCEEEEEEE
T ss_pred CEEEEEEcCCCCEecCCcEEEEEEE
Confidence 4445678999999999999999974
No 144
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=22.21 E-value=1e+02 Score=28.44 Aligned_cols=63 Identities=19% Similarity=0.200 Sum_probs=37.6
Q ss_pred eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEec-CeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091 202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQF-GTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280 (287)
Q Consensus 202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEam-K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~ 280 (287)
..|.|+..|++...-. ...| -|..| +|+-. .....+.+.. .++.|+.||.|..||+|..+.
T Consensus 196 tpV~A~adG~Vv~ag~---------~~~g----~Gn~V-iI~H~~g~~~T~YaHL----s~i~Vk~Gq~V~~GqvIG~vG 257 (291)
T 1qwy_A 196 SPVYSLTDGTVVQAGW---------SNYG----GGNQV-TIKEANSNNYQWYMHN----NRLTVSAGDKVKAGDQIAYSG 257 (291)
T ss_dssp CEEECSSSEEEEEEEE---------ETTT----TEEEE-EEEETTSSEEEEEEEE----SEECCCTTCEECTTCEEEECC
T ss_pred CeEEeCcCeEEEEEEE---------ecCC----CCeEE-EEEECCCCEEEEEEcC----CccccCCcCEECCCCEEEEEC
Confidence 4688888888765411 0001 13333 33322 2223344443 357899999999999999886
Q ss_pred cC
Q 023091 281 PS 282 (287)
Q Consensus 281 p~ 282 (287)
..
T Consensus 258 ~T 259 (291)
T 1qwy_A 258 ST 259 (291)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 145
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=21.88 E-value=51 Score=30.85 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=18.3
Q ss_pred CcccCCCEEcCCCEEEEEEe
Q 023091 225 PICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEa 244 (287)
|+++.|+.|++|++|+.|+.
T Consensus 112 ~~~~dG~~v~~g~~l~~v~G 131 (320)
T 3paj_A 112 WHVQDGDTLTPNQTLCTLTG 131 (320)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEeCCCCEecCCCEEEEEEe
Confidence 58999999999999999984
No 146
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=21.43 E-value=49 Score=29.70 Aligned_cols=19 Identities=11% Similarity=0.108 Sum_probs=17.4
Q ss_pred cccCCCEEcCCCEEEEEEe
Q 023091 226 ICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 226 ~V~vGd~Vk~GqvL~iIEa 244 (287)
++++|+.|.+|++|+.|+.
T Consensus 63 ~~~eG~~v~~g~~~~~v~G 81 (273)
T 2b7n_A 63 TIKDKERFKPKDALMEIRG 81 (273)
T ss_dssp ECCTTCEECTTCEEEEEEE
T ss_pred EcCCCCCcCCCCEEEEEEe
Confidence 6899999999999999984
No 147
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=21.20 E-value=70 Score=28.66 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=18.7
Q ss_pred EEecCCCCeecCCCeEEEEec
Q 023091 261 KLLFDDGDAVGFGDPLIAVLP 281 (287)
Q Consensus 261 eilv~dGd~Ve~GqpL~~I~p 281 (287)
++.+.||+.|..|++|++|+.
T Consensus 61 ~~~~~eG~~v~~g~~~~~v~G 81 (273)
T 2b7n_A 61 VQTIKDKERFKPKDALMEIRG 81 (273)
T ss_dssp EEECCTTCEECTTCEEEEEEE
T ss_pred EEEcCCCCCcCCCCEEEEEEe
Confidence 457999999999999999974
No 148
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=20.96 E-value=55 Score=29.99 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=18.3
Q ss_pred CcccCCCEEcCCCEEEEEEe
Q 023091 225 PICKEGDVIKEGQTIGYLDQ 244 (287)
Q Consensus 225 p~V~vGd~Vk~GqvL~iIEa 244 (287)
|++++|+.|.+|++|+.|+.
T Consensus 89 ~~~~dG~~v~~g~~~~~v~G 108 (296)
T 1qap_A 89 WHVDDGDAIHANQTVFELQG 108 (296)
T ss_dssp ESCCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCEecCCCEEEEEEE
Confidence 58999999999999999984
Done!