BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023092
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 98/198 (49%), Gaps = 16/198 (8%)
Query: 51 ISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSD-TATLRKASIWREASRIISEEGFR 109
+ LAGGVA A+SKT AP+ R+ +L QVQ +A + I RI E+GF
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67
Query: 110 AFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHF----VSGG 165
+FW+GNL + P ++NF + YK++ G + + +F SGG
Sbjct: 68 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLG-------GVDRHKQFWRYFAGNLASGG 120
Query: 166 LAGITAASVTYPLDLVRTRLAAQTNV----IYYRGICHALQTICRDEGIWGLYKGLGATL 221
AG T+ YPLD RTRLAA + G+ + + I + +G+ GLY+G ++
Sbjct: 121 AAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSV 180
Query: 222 LGVGPSIAISFSVYETLR 239
G+ A F VY+T +
Sbjct: 181 QGIIIYRAAYFGVYDTAK 198
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 35/203 (17%)
Query: 53 QLLAGGVAGALSKTCTAPL--ARLTILFQVQGMHSDTATLRKASIWRE-------ASRII 103
L +GG AGA S PL AR + A + K + RE ++I
Sbjct: 115 NLASGGAAGATSLCFVYPLDFARTRL----------AADVGKGAAQREFTGLGNCITKIF 164
Query: 104 SEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVS 163
+G R ++G V++ + Y + F Y+ K +L + + + V ++
Sbjct: 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP---------DPKNVHIIVSWMI 215
Query: 164 GGLAGITAASVTYPLDLVRTRLAAQTNV----IYYRGICHALQTICRDEGIWGLYKGLGA 219
A V+YP D VR R+ Q+ I Y G + I +DEG +KG +
Sbjct: 216 AQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWS 275
Query: 220 TLL-GVGPSIAISFSVYETLRSF 241
+L G+G + + +Y+ ++ F
Sbjct: 276 NVLRGMGGAFVL--VLYDEIKKF 296
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 84/202 (41%), Gaps = 16/202 (7%)
Query: 49 GTISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSDTATLRKASIWREASRIIS-EEG 107
G S+LLAG GAL+ P + + FQ Q R+ EA + I+ EEG
Sbjct: 103 GIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGG---RRYQSTVEAYKTIAREEG 159
Query: 108 FRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLA 167
R WKG +A + Y+ K L + M+ DL HF S A
Sbjct: 160 IRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLL-------KANLMTDDLPCHFTSAFGA 212
Query: 168 GITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPS 227
G + P+D+V+TR + + Y H T+ R EG YKG + L +G
Sbjct: 213 GFCTTVIASPVDVVKTRYM-NSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSW 271
Query: 228 IAISFSVYETLR----SFWQSR 245
+ F YE L+ + +QSR
Sbjct: 272 NVVMFVTYEQLKRALMAAYQSR 293
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 159 VHFVSGGLAGITAASVTYPLDLVRTRLAAQTNV---------IYYRGICHALQTICRDEG 209
V F+ G A A +T+PLD + RL Q YRG+ + T+ R EG
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 62
Query: 210 IWGLYKGLGATLLGVGPSIAISFSVYETLRSFW 242
LY GL A L ++ +Y++++ F+
Sbjct: 63 PRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFY 95
>pdb|2I3O|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
Length = 516
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 98 EASRIISEEGFRAFWKGNLVTI 119
E+ R+ SEEGFR+F+ G+L I
Sbjct: 190 ESFRLXSEEGFRSFYDGSLADI 211
>pdb|3T24|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Opdq
pdb|3T24|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Opdq
pdb|3T24|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Opdq
Length = 401
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 112 WKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDL 157
W NL T H Y ++ + +HY L+H +P+ + Q ++ SD+
Sbjct: 201 WTDNLSTSYH---YGKLDNFYKQHYLGLVHTLPIADKQ--SLKSDI 241
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 217 LGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPV---------LVSLACGSLSGIASS 267
LGA + G GP FS E + R+ D PV ++ + G I
Sbjct: 111 LGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGD 170
Query: 268 TETEDVGLALHQVFNQSD 285
+T LA+ + NQ D
Sbjct: 171 RQTGKTALAIDAIINQRD 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,016,433
Number of Sequences: 62578
Number of extensions: 255677
Number of successful extensions: 535
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 8
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)