Query 023092
Match_columns 287
No_of_seqs 138 out of 1464
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 16:13:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 7E-44 2.4E-48 307.8 23.4 232 48-284 5-241 (297)
2 2lck_A Mitochondrial uncouplin 100.0 9.5E-44 3.2E-48 307.7 20.4 225 52-284 3-234 (303)
3 2lck_A Mitochondrial uncouplin 100.0 3E-43 1E-47 304.5 15.0 229 6-244 52-288 (303)
4 1okc_A ADP, ATP carrier protei 100.0 6.9E-42 2.4E-46 295.3 17.2 225 6-241 55-296 (297)
5 3tgu_G UQCRQ, mitochondrial ub 42.7 40 0.0014 22.0 4.3 39 210-248 34-72 (81)
6 1pp9_G Ubiquinol-cytochrome C 31.2 72 0.0025 20.8 4.1 41 209-249 33-73 (81)
7 3f2e_A SIRV coat protein; four 25.6 37 0.0013 21.8 1.9 34 88-121 4-41 (100)
8 3fbl_A Putative uncharacterize 22.5 74 0.0025 19.4 2.7 18 196-213 3-20 (82)
9 3cx5_H Cytochrome B-C1 complex 19.8 1.1E+02 0.0039 20.4 3.5 38 209-246 43-80 (93)
10 2acm_A Mucin-1; auto-catalytic 16.2 34 0.0011 20.8 0.2 20 93-112 40-59 (66)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=7e-44 Score=307.78 Aligned_cols=232 Identities=29% Similarity=0.478 Sum_probs=200.0
Q ss_pred chhHHHHHHHHHHHHHHHHhccchHHHHHHHHhcCCCCC-ccccccccHHHHHHHHHhhhchhhhhcchhhhhhhhccch
Q 023092 48 IGTISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSD-TATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYS 126 (287)
Q Consensus 48 ~~~~~~~~~g~~a~~~~~~i~~Ple~vk~~~q~~~~~~~-~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~ 126 (287)
.+....+++|++|++++.++++|+|+||+|+|++..... ....+|++.++++++++++||++|||||+.+++++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 456788999999999999999999999999999864321 1244689999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCcccccCCCCchhHHHHHHhhhHHHHhHhhhcccHHHHHHHHHhccC----CcccCcHHHHHH
Q 023092 127 SVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTN----VIYYRGICHALQ 202 (287)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~ikt~~q~~~~----~~~~~s~~~~~~ 202 (287)
+++|.+||.+|+.+..... ..+....+....+++|++||+++.++++|+|+||+|+|.+.. ...|.+..++++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~---~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~ 161 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVD---RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCIT 161 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCC---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHH
T ss_pred HHHHHHHHHHHHHhccccC---cccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHH
Confidence 9999999999995432211 111122345678999999999999999999999999999853 346899999999
Q ss_pred HHHHhhChhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHhHHHHHHhhhhhcchHHHHHHHhcc
Q 023092 203 TICRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASSTETEDVGLALHQVFN 282 (287)
Q Consensus 203 ~i~~~~Gi~glyrG~~~~~~~~~~~~~~~~~~ye~l~~~~~~~~~~~~~~~~~~~~g~~a~~~a~~~~~p~~~~r~q~~~ 282 (287)
+++++||+.|||||+.+++++.+|+.+++|.+||.+|+.+.+.. +.+.+..+++|+++|++++++++|+|++|+|+|.
T Consensus 162 ~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~--~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~ 239 (297)
T 1okc_A 162 KIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK--NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMM 239 (297)
T ss_dssp HHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG--CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC--CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 99999999999999999999999999999999999999775432 3456888999999999999999999999999887
Q ss_pred CC
Q 023092 283 QS 284 (287)
Q Consensus 283 ~~ 284 (287)
+.
T Consensus 240 ~~ 241 (297)
T 1okc_A 240 QS 241 (297)
T ss_dssp TT
T ss_pred cC
Confidence 64
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=9.5e-44 Score=307.69 Aligned_cols=225 Identities=20% Similarity=0.339 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHhcCCCCC----ccccccccHHHHHHHHHhhhchhhhhcchhhhhhhhccchh
Q 023092 52 SQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSD----TATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSS 127 (287)
Q Consensus 52 ~~~~~g~~a~~~~~~i~~Ple~vk~~~q~~~~~~~----~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~ 127 (287)
..+++|++|++++.++++|+|+||+|+|++..... ....+|++.++++++++++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 46899999999999999999999999999865321 11346899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCCCchhHHHHHHhhhHHHHhHhhhcccHHHHHHHHHhccC---CcccCcHHHHHHHH
Q 023092 128 VNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTN---VIYYRGICHALQTI 204 (287)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~ikt~~q~~~~---~~~~~s~~~~~~~i 204 (287)
++|.+||.+|+.+.+.. + ..+....+++|++||+++.++++|+|++|+|+|.+.. ...|.+..++++++
T Consensus 83 i~f~~ye~~k~~~~~~~------~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i 154 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS------E--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTI 154 (303)
T ss_dssp HTTTHHHHHHHHHSCCC------S--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC------c--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHH
Confidence 99999999999886421 1 2456788999999999999999999999999999863 34789999999999
Q ss_pred HHhhChhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHhHHHHHHhhhhhcchHHHHHHHhccCC
Q 023092 205 CRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASSTETEDVGLALHQVFNQS 284 (287)
Q Consensus 205 ~~~~Gi~glyrG~~~~~~~~~~~~~~~~~~ye~l~~~~~~~~~~~~~~~~~~~~g~~a~~~a~~~~~p~~~~r~q~~~~~ 284 (287)
+++||++|||||+.+++++.+|..+++|.+||.+|+.+.+....+.+.+..+++|++||++++++++|+|++|+|+|.+.
T Consensus 155 ~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~ 234 (303)
T 2lck_A 155 AREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA 234 (303)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998776555566788999999999999999999999999999875
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3e-43 Score=304.55 Aligned_cols=229 Identities=26% Similarity=0.371 Sum_probs=196.0
Q ss_pred hhhhhheeecccccccccccccceeeccH--------HHHHHHHhhccCcchhHHHHHHHHHHHHHHHHhccchHHHHHH
Q 023092 6 EARVGVVVEGGQRGLSSGNGSVSVDKITL--------QQQQKQMLQNQSQIGTISQLLAGGVAGALSKTCTAPLARLTIL 77 (287)
Q Consensus 6 ~~~~~i~~~~G~~~l~rG~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Ple~vk~~ 77 (287)
++...|+++||++|||||++++++..++. +..+..+.+.....+....+++|++|++++.++++|+|+||+|
T Consensus 52 ~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktr 131 (303)
T 2lck_A 52 GTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVR 131 (303)
T ss_dssp HHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 35567899999999999999988876554 2333333332234677889999999999999999999999999
Q ss_pred HHhcCCCCCccccccccHHHHHHHHHhhhchhhhhcchhhhhhhhccchhHHHHHHHHHHHHHhcCCcccccCCCCchhH
Q 023092 78 FQVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDL 157 (287)
Q Consensus 78 ~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (287)
+|++... ....+|++.++++++++++||++|||||+.+++++.++..+++|.+||.+|+.+.+... ...+.
T Consensus 132 lq~~~~~--~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~-------~~~~~ 202 (303)
T 2lck_A 132 FQAQARA--GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL-------MTDDL 202 (303)
T ss_dssp HHHSCSC--CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS-------CCSCH
T ss_pred Hhccccc--CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CCCch
Confidence 9998643 12346889999999999999999999999999999999999999999999998764321 12345
Q ss_pred HHHHHhhhHHHHhHhhhcccHHHHHHHHHhccCCcccCcHHHHHHHHHHhhChhhcccchhHHHhhHHHHHHHHHHHHHH
Q 023092 158 FVHFVSGGLAGITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIAISFSVYET 237 (287)
Q Consensus 158 ~~~~~~g~~ag~~~~~v~~P~d~ikt~~q~~~~~~~~~s~~~~~~~i~~~~Gi~glyrG~~~~~~~~~~~~~~~~~~ye~ 237 (287)
...+++|++||++++++++|+|+||+|+|.+.. ..|.++++|+++++++||++|||||+.++++|.+|..+++|.+||.
T Consensus 203 ~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~ 281 (303)
T 2lck_A 203 PCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL-GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQ 281 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHH
Confidence 678999999999999999999999999999864 3589999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 023092 238 LRSFWQS 244 (287)
Q Consensus 238 l~~~~~~ 244 (287)
+|+.+..
T Consensus 282 ~k~~l~~ 288 (303)
T 2lck_A 282 LKRALMA 288 (303)
T ss_dssp HHSCCCC
T ss_pred HHHHHHH
Confidence 9987653
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=6.9e-42 Score=295.28 Aligned_cols=225 Identities=23% Similarity=0.317 Sum_probs=185.5
Q ss_pred hhhhhheeecccccccccccccceeeccHH-------H-HHHHHhhccC---c--chhHHHHHHHHHHHHHHHHhccchH
Q 023092 6 EARVGVVVEGGQRGLSSGNGSVSVDKITLQ-------Q-QQKQMLQNQS---Q--IGTISQLLAGGVAGALSKTCTAPLA 72 (287)
Q Consensus 6 ~~~~~i~~~~G~~~l~rG~~~~~~~~~~~~-------~-~~~~~~~~~~---~--~~~~~~~~~g~~a~~~~~~i~~Ple 72 (287)
++...|+++||++|||||+.++++..++.. + .+..+..... . ......+++|++|++++.++++|+|
T Consensus 55 ~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld 134 (297)
T 1okc_A 55 DCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLD 134 (297)
T ss_dssp HHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 345678999999999999999988766652 2 2332222211 1 2346789999999999999999999
Q ss_pred HHHHHHHhcCCCCCccccccccHHHHHHHHHhhhchhhhhcchhhhhhhhccchhHHHHHHHHHHHHHhcCCcccccCCC
Q 023092 73 RLTILFQVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGEN 152 (287)
Q Consensus 73 ~vk~~~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (287)
+||+|+|++.... ....+|++.++++++++++||++|||||+.+++++.++..+++|.+||.+|+.+.+.
T Consensus 135 ~vktrlq~~~~~~-~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--------- 204 (297)
T 1okc_A 135 FARTRLAADVGKG-AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--------- 204 (297)
T ss_dssp HHHHHHHHCCCSS-TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG---------
T ss_pred HHHHHHhccccCC-CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC---------
Confidence 9999999986432 123568899999999999999999999999999999999999999999999976421
Q ss_pred CchhHHHHHHhhhHHHHhHhhhcccHHHHHHHHHhccC----CcccCcHHHHHHHHHHhhChhhcccchhHHHhhHHHHH
Q 023092 153 MSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTN----VIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSI 228 (287)
Q Consensus 153 ~~~~~~~~~~~g~~ag~~~~~v~~P~d~ikt~~q~~~~----~~~~~s~~~~~~~i~~~~Gi~glyrG~~~~~~~~~~~~ 228 (287)
...+....+++|++||++++++++|+|+||+|+|.+.. ...|.++++|+++++++||++|||||+.|+++|. +..
T Consensus 205 ~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~ 283 (297)
T 1okc_A 205 KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGG 283 (297)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHH
T ss_pred CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccc
Confidence 11345677899999999999999999999999998753 2468999999999999999999999999999996 578
Q ss_pred HHHHHHHHHHHHH
Q 023092 229 AISFSVYETLRSF 241 (287)
Q Consensus 229 ~~~~~~ye~l~~~ 241 (287)
+++|.+||.+|+.
T Consensus 284 ~~~f~~ye~~k~~ 296 (297)
T 1okc_A 284 AFVLVLYDEIKKF 296 (297)
T ss_dssp HHHHHHHHTC---
T ss_pred eeeehHHHHHHhh
Confidence 9999999998875
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=42.73 E-value=40 Score=22.04 Aligned_cols=39 Identities=8% Similarity=0.251 Sum_probs=29.3
Q ss_pred hhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 023092 210 IWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQN 248 (287)
Q Consensus 210 i~glyrG~~~~~~~~~~~~~~~~~~ye~l~~~~~~~~~~ 248 (287)
+-..+|-+...++..+|..++.+.+|++.++..+....+
T Consensus 34 i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rK 72 (81)
T 3tgu_G 34 LPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRK 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334444466778888999999999999999988765444
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=31.17 E-value=72 Score=20.77 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=30.7
Q ss_pred ChhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 023092 209 GIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQND 249 (287)
Q Consensus 209 Gi~glyrG~~~~~~~~~~~~~~~~~~ye~l~~~~~~~~~~~ 249 (287)
|+-..+|-+...++..+|..++.+.+|++.++..+....++
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKn 73 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKN 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCC
Confidence 44445555677777888999999999999999887654443
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=25.60 E-value=37 Score=21.80 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=21.8
Q ss_pred cccccccHHHHHHHHHhhhch----hhhhcchhhhhhh
Q 023092 88 ATLRKASIWREASRIISEEGF----RAFWKGNLVTIAH 121 (287)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~~G~----~glyrG~~~~~~~ 121 (287)
+.+++.+.-+.+..++.+-|+ +.+|+|+...+.|
T Consensus 4 nvpkftsvne~vsavltqygvtgpnraiyqgfglkvar 41 (100)
T 3f2e_A 4 NVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVAR 41 (100)
T ss_dssp ----CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHH
Confidence 456788888888888888776 4467776655543
No 8
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=22.55 E-value=74 Score=19.40 Aligned_cols=18 Identities=28% Similarity=0.628 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHhhChhhc
Q 023092 196 GICHALQTICRDEGIWGL 213 (287)
Q Consensus 196 s~~~~~~~i~~~~Gi~gl 213 (287)
..+-.++++++.+|+...
T Consensus 3 klrlaikeicktdgipni 20 (82)
T 3fbl_A 3 KLRLAIKEICKTDGIPNI 20 (82)
T ss_dssp HHHHHHHHHHHHTTCCGG
T ss_pred hHHHHHHHHHccCCCCcc
Confidence 455678999999998553
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=19.79 E-value=1.1e+02 Score=20.42 Aligned_cols=38 Identities=8% Similarity=0.110 Sum_probs=30.9
Q ss_pred ChhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHhhcC
Q 023092 209 GIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRR 246 (287)
Q Consensus 209 Gi~glyrG~~~~~~~~~~~~~~~~~~ye~l~~~~~~~~ 246 (287)
|+-..+|-+...++..+|..++.+.+|++.++..+...
T Consensus 43 ~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l~ 80 (93)
T 3cx5_H 43 AVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLY 80 (93)
T ss_dssp TSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHHh
Confidence 56667777777888889999999999999999876544
No 10
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=16.19 E-value=34 Score=20.79 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.9
Q ss_pred ccHHHHHHHHHhhhchhhhh
Q 023092 93 ASIWREASRIISEEGFRAFW 112 (287)
Q Consensus 93 ~~~~~~~~~i~~~~G~~gly 112 (287)
+++.+.+.+|++++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 57888888999999998876
Done!