BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023093
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RF73|TMM19_PONAB Transmembrane protein 19 OS=Pongo abelii GN=TMEM19 PE=2 SV=1
Length = 336
Score = 184 bits (468), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 110/276 (39%), Positives = 158/276 (57%), Gaps = 2/276 (0%)
Query: 9 LIAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVG 68
L +V++ LI ++KSL+ SGA+ G +V A F LL+FF +SSKLTK
Sbjct: 55 LFSVVVPVLIISNGLKKKSLDHSGALGGLVVGFILTIANFSFFTSLLMFFLSSSKLTKWK 114
Query: 69 EERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIG 128
E K+R+D+++KEGGQRNWIQV N + L ++ G + +D + + +
Sbjct: 115 GEMKKRLDSEYKEGGQRNWIQVFCNGAVPTELALLYMIENGPGEIPVDFSKQYSASWMCL 174
Query: 129 GILGHYCCCNGDTWSSELG-VLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIG 187
+L C GDTW+SE+G VLS PRLITT++ V GTNGGVT GL++++ G+ +G
Sbjct: 175 SLLAALACSAGDTWASEVGPVLSKSPPRLITTWEKVPVGTNGGVTVVGLVSSLLGGTFVG 234
Query: 188 LTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGFCSVRNKVVG 247
+ + L DI+ Q +I +AGL GS++DS LGAT+Q++G VV
Sbjct: 235 IAYFLTQLIFVN-DLDISAPQWPIIAFGGLAGLLGSIVDSYLGATMQYTGLDESTGMVVN 293
Query: 248 KPGPTVKKISGLTILDNNAVNLVSILLTSLLTSIAC 283
P K I+G ILDNNAVNL S +L ++L A
Sbjct: 294 SPTNEAKHIAGKPILDNNAVNLFSSVLIAVLLPTAA 329
>sp|Q96HH6|TMM19_HUMAN Transmembrane protein 19 OS=Homo sapiens GN=TMEM19 PE=2 SV=1
Length = 336
Score = 184 bits (466), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 109/278 (39%), Positives = 159/278 (57%), Gaps = 2/278 (0%)
Query: 7 QTLIAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTK 66
+ L +V++ LI ++KSL+ SGA+ G +V A F LL+FF +SSKLTK
Sbjct: 53 RWLFSVVVPVLIVSNGLKKKSLDHSGALGGLVVGFILTIANFSFFTSLLMFFLSSSKLTK 112
Query: 67 VGEERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSL 126
E K+R+D+++KEGGQRNW+QV N + L ++ G + +D + + +
Sbjct: 113 WKGEVKKRLDSEYKEGGQRNWVQVFCNGAVPTELALLYMIENGPGEIPVDFSKQYSASWM 172
Query: 127 IGGILGHYCCCNGDTWSSELG-VLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSV 185
+L C GDTW+SE+G VLS PRLITT++ V GTNGGVT GL++++ G+
Sbjct: 173 CLSLLAALACSAGDTWASEVGPVLSKSSPRLITTWEKVPVGTNGGVTVVGLVSSLLGGTF 232
Query: 186 IGLTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGFCSVRNKV 245
+G+ + L DI+ Q +I +AGL GS++DS LGAT+Q++G V
Sbjct: 233 VGIAYFLTQLIFVN-DLDISAPQWPIIAFGGLAGLLGSIVDSYLGATMQYTGLDESTGMV 291
Query: 246 VGKPGPTVKKISGLTILDNNAVNLVSILLTSLLTSIAC 283
V P + I+G ILDNNAVNL S +L +LL A
Sbjct: 292 VNSPTNKARHIAGKPILDNNAVNLFSSVLIALLLPTAA 329
>sp|Q0P4L9|TMM19_XENTR Transmembrane protein 19 OS=Xenopus tropicalis GN=tmem19 PE=2 SV=1
Length = 336
Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/277 (40%), Positives = 159/277 (57%), Gaps = 2/277 (0%)
Query: 7 QTLIAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTK 66
+ L++VL +I +++SL+ SGA+ G +V A F + LL FFF SSKLTK
Sbjct: 53 RWLVSVLTPIIIVWHGIKKRSLDNSGALGGLLVGFILTIANYSFFSALLTFFFISSKLTK 112
Query: 67 VGEERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSL 126
E K+ D+++KEGGQRNW+QV N G+ A L ++ G + +D + + +
Sbjct: 113 WKGEVKKCYDSEYKEGGQRNWVQVFCNGGLPAELALLYMIENGPGEIPIDFSKEYTASWM 172
Query: 127 IGGILGHYCCCNGDTWSSELG-VLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSV 185
+LG GDTW+SE+G VLS PRLITT++ V GTNGGVT GL++++ G+
Sbjct: 173 CLSLLGALASSAGDTWASEIGPVLSKSSPRLITTWEKVPVGTNGGVTPVGLISSLLGGTS 232
Query: 186 IGLTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGFCSVRNKV 245
+G+ + + +IA Q ++ +AGL GSLIDS LGA +Q+SG+ K+
Sbjct: 233 VGVAYFVTQLIFVP-DLEIAAPQWPIVIYGGMAGLLGSLIDSYLGAIMQYSGYDESTGKI 291
Query: 246 VGKPGPTVKKISGLTILDNNAVNLVSILLTSLLTSIA 282
V P K I G ILDNNAVNL S +L +LL A
Sbjct: 292 VNHPTKEAKFICGKPILDNNAVNLFSSILIALLLPTA 328
>sp|Q6P726|TMM19_RAT Transmembrane protein 19 OS=Rattus norvegicus GN=Tmem19 PE=2 SV=2
Length = 351
Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/267 (41%), Positives = 153/267 (57%), Gaps = 2/267 (0%)
Query: 18 IAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDA 77
I+ +++KSL+ SGA+ G +V A F LL+FF TSSKLTK E K+R+D+
Sbjct: 79 ISCNGFKKKSLDHSGALGGLVVGFILTIANFSFFTSLLMFFLTSSKLTKWRGEMKKRLDS 138
Query: 78 DFKEGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIGGILGHYCCC 137
++KEGGQRNW+QV N G+ L ++ G + +D + + + +L
Sbjct: 139 EYKEGGQRNWVQVFCNGGVPTELALLYMIENGPGEMPIDFAKQHTASWMCLSLLAALASS 198
Query: 138 NGDTWSSELG-VLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIGLTFVLFGFF 196
GDTW+SE+ VLS PRLITT++ V GTNGGVT GL++++ G+ +GL + L
Sbjct: 199 AGDTWASEVAPVLSKSSPRLITTWEKVPVGTNGGVTAVGLVSSLLGGTFVGLAYFLTQLV 258
Query: 197 TATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGFCSVRNKVVGKPGPTVKKI 256
DI+ Q +I +AGL GS++DS LGAT+QFSG VV P K I
Sbjct: 259 FVN-DLDISAPQWPLIAFGGLAGLLGSIVDSFLGATMQFSGLDESTGLVVSSPTQETKHI 317
Query: 257 SGLTILDNNAVNLVSILLTSLLTSIAC 283
SG ILDNNAVNL S +L +LL A
Sbjct: 318 SGKPILDNNAVNLFSSVLVALLLPTAA 344
>sp|Q91W52|TMM19_MOUSE Transmembrane protein 19 OS=Mus musculus GN=Tmem19 PE=2 SV=1
Length = 336
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 109/276 (39%), Positives = 155/276 (56%), Gaps = 2/276 (0%)
Query: 9 LIAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVG 68
L +V++ +IA +++KSL+ SGA+ G +V A F L+ FF +SSKLTK
Sbjct: 55 LFSVVVPVVIACNGFKKKSLDHSGALGGLVVGFILTIANFSFFTSLMTFFLSSSKLTKWR 114
Query: 69 EERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIG 128
K+++D+++KEGGQRNW+QV N + L ++ G + +D + + +
Sbjct: 115 GNIKKQLDSEYKEGGQRNWVQVFCNGAVPTELALLYMIENGPGEMPIDFSKQHTASWMCL 174
Query: 129 GILGHYCCCNGDTWSSELG-VLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIG 187
+L GDTW+SE+ VLS PRLITT++ V GTNGGVT GL +++ G+ +G
Sbjct: 175 SLLAALASSAGDTWASEVAPVLSKSSPRLITTWEKVPVGTNGGVTAVGLASSLLGGTFVG 234
Query: 188 LTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGFCSVRNKVVG 247
L + L DI+ Q +I +AGL GSL+DS LGAT+QFSG VV
Sbjct: 235 LAYFLTQLVFVN-DLDISAPQWPIIAFGGVAGLFGSLVDSFLGATMQFSGLDERTGLVVS 293
Query: 248 KPGPTVKKISGLTILDNNAVNLVSILLTSLLTSIAC 283
P K I+G ILDNNAVNL S +L +LL A
Sbjct: 294 SPTQETKHIAGKPILDNNAVNLFSSVLVALLLPTAA 329
>sp|Q6IR76|TMM19_XENLA Transmembrane protein 19 OS=Xenopus laevis GN=tmem19 PE=2 SV=1
Length = 336
Score = 167 bits (424), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 114/280 (40%), Positives = 160/280 (57%), Gaps = 8/280 (2%)
Query: 7 QTLIAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTK 66
+ L+++L +I +++SL+ SGA+ G +V A F + LL FFF SSKLTK
Sbjct: 53 RWLVSLLTPIIIVSHGIKKRSLDSSGALGGLLVGFILTIANYSFFSALLAFFFISSKLTK 112
Query: 67 VGEERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSL 126
E K+ D+++KEGGQRNW+QV N G+ A L ++ G + +D + + +
Sbjct: 113 WRGEVKKCYDSEYKEGGQRNWVQVFCNGGLPAELALLYMIENGPGEIPIDFSKEYTASWM 172
Query: 127 IGGILGHYCCCNGDTWSSELG-VLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSV 185
+LG C GDTW+SE+G VLS PRLITT++ V GTNGGVT GL++++ G
Sbjct: 173 CLSLLGALSCSAGDTWASEIGPVLSKSAPRLITTWEKVPVGTNGGVTPIGLISSLLGGIS 232
Query: 186 IGLTFVLFGFFTATCTRD---IALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGFCSVR 242
+G+ + F T D IA Q ++ +AGL GSLIDS LGA +Q+SG+
Sbjct: 233 VGVAY----FVTQLVFVDDLEIAAPQWPIVIYGGMAGLLGSLIDSYLGAIMQYSGYDEST 288
Query: 243 NKVVGKPGPTVKKISGLTILDNNAVNLVSILLTSLLTSIA 282
K+V P K I G ILDNNAVNL S +L +LL A
Sbjct: 289 GKIVNHPTKDAKFICGKPILDNNAVNLFSSILIALLLPTA 328
>sp|Q58343|Y933_METJA Uncharacterized membrane protein MJ0933 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0933 PE=3 SV=1
Length = 238
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 120/248 (48%), Gaps = 52/248 (20%)
Query: 1 METFLNQTLIAVLISSLIAIRSYRRKSLNFSG----AVSGFIVMTAHIAAGSRFGALLLV 56
MET + + +++LI ++A+ + + L+ G ++ GFI++ G ++ LLL
Sbjct: 6 METLI-RLFVSILIICVLALMIKKSRCLDNEGVIGSSIMGFILLYF---CGFKYLILLLS 61
Query: 57 FFFTSSKLTKVGEERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIV------WKLTGQ 110
FF +++VG E+K+ D R+ VL+N G+ +L I+ W L G
Sbjct: 62 FFILGVLVSRVGLEKKKAKKMDET---CRSLKNVLAN-GLIPILFAILAIFGFNWALIGY 117
Query: 111 QDKCLDSKELPLVTSLIGGILGHYCCCNGDTWSSELGVLSDEQPRLITTFKPVRRGTNGG 170
+ DT+SSELG+LS+E+PRLITTF+ V +GT+G
Sbjct: 118 --------------------ISSIAAATSDTFSSELGILSNEKPRLITTFEVVEKGTDGA 157
Query: 171 VTKAGLLAAVAAGSVIGL-TFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLL 229
+T G LA V +IGL ++LFG DI ++ G+ G+L DSL+
Sbjct: 158 ITIFGTLAGVLGAFLIGLFGYLLFG--------DIK-----IVLCGTAGGIAGNLADSLV 204
Query: 230 GATLQFSG 237
GA + G
Sbjct: 205 GALFERKG 212
>sp|P73555|Y875_SYNY3 Uncharacterized membrane protein sll0875 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=sll0875 PE=3 SV=1
Length = 258
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 23/202 (11%)
Query: 45 AAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIV 104
A G R ++L +FF S +T++G++ K K GQR V ++ AA+ +
Sbjct: 58 ALGWRGYLVVLAYFFVGSAVTRIGQKEKEAAGIAEKRSGQRGPENVWGSALTAALCAL-- 115
Query: 105 WKLTGQQDKCLDSKELPLVTSLIGGILGHYCCCNGDTWSSELGVLSDEQPRLITTFKPVR 164
+ L +L G + + DT +SE+G + LITT +PV
Sbjct: 116 -------AIAFGPEPWQLWLAL--GYVASFSTKLSDTTASEVGKAYGKNTFLITTLQPVP 166
Query: 165 RGTNGGVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSL 224
RGT G V+ G LA AAG + + G+ + L I S +A +
Sbjct: 167 RGTEGAVSVEGTLAGFAAGLAL----AVLGY-------GVGLISFGGIIFSTLAAFIATN 215
Query: 225 IDSLLGATLQFSGFCSVRNKVV 246
++S++GATLQ + + + N+VV
Sbjct: 216 LESVIGATLQ-NKWPWLTNEVV 236
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,114,828
Number of Sequences: 539616
Number of extensions: 3981916
Number of successful extensions: 12584
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 12555
Number of HSP's gapped (non-prelim): 14
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)