Query 023093
Match_columns 287
No_of_seqs 115 out of 434
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:23:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4491 Predicted membrane pro 100.0 1.4E-86 3.1E-91 595.9 17.6 284 4-287 38-323 (323)
2 PF01940 DUF92: Integral membr 100.0 7.3E-73 1.6E-77 511.3 22.6 225 11-279 1-226 (226)
3 TIGR00297 conserved hypothetic 100.0 2.1E-72 4.5E-77 510.2 24.9 232 6-283 2-234 (237)
4 COG1836 Predicted membrane pro 100.0 1.8E-64 4E-69 454.0 22.7 237 2-284 7-244 (247)
5 PF01148 CTP_transf_1: Cytidyl 93.8 0.31 6.6E-06 43.7 8.2 52 130-190 133-184 (259)
6 COG0170 SEC59 Dolichol kinase 81.4 8.5 0.00018 34.9 8.2 50 129-188 116-165 (216)
7 COG0575 CdsA CDP-diglyceride s 74.5 26 0.00057 32.5 9.5 91 132-235 139-230 (265)
8 PF04973 NMN_transporter: Nico 70.9 42 0.00091 29.1 9.4 88 11-98 7-97 (181)
9 PRK14395 membrane protein; Pro 56.2 61 0.0013 29.1 7.8 74 10-83 119-192 (195)
10 COG3167 PilO Tfp pilus assembl 52.5 8.7 0.00019 34.7 1.7 29 141-173 152-184 (211)
11 KOG4783 Uncharacterized conser 51.8 40 0.00087 27.2 5.2 26 262-287 60-86 (102)
12 COG4060 MtrD Tetrahydromethano 49.9 23 0.00051 31.7 4.0 29 157-185 115-147 (230)
13 PRK04032 hypothetical protein; 49.9 71 0.0015 27.9 6.9 58 167-229 33-91 (159)
14 PLN02953 phosphatidate cytidyl 49.1 81 0.0018 31.6 8.0 84 133-230 275-358 (403)
15 PRK14402 membrane protein; Pro 46.1 78 0.0017 28.5 6.8 71 11-81 122-192 (198)
16 PHA02723 hypothetical protein; 44.9 3.6 7.9E-05 30.7 -1.5 13 260-272 41-53 (77)
17 PRK06814 acylglycerophosphoeth 44.6 4.6E+02 0.01 28.8 15.4 31 214-244 340-370 (1140)
18 COG1585 Membrane protein impli 43.9 80 0.0017 26.8 6.2 33 34-67 32-64 (140)
19 PRK14405 membrane protein; Pro 43.6 96 0.0021 28.0 7.0 59 23-81 136-194 (202)
20 COG4854 Predicted membrane pro 42.4 37 0.00079 28.3 3.7 68 30-98 9-83 (126)
21 PRK14397 membrane protein; Pro 42.0 1E+02 0.0022 28.4 7.0 57 18-75 128-184 (222)
22 PF06220 zf-U1: U1 zinc finger 41.6 12 0.00027 24.8 0.7 13 234-246 1-13 (38)
23 PRK00968 tetrahydromethanopter 38.5 1.1E+02 0.0023 28.3 6.4 17 86-102 74-90 (240)
24 TIGR00023 acyl-phosphate glyce 38.5 1.6E+02 0.0035 26.4 7.6 61 21-82 133-193 (196)
25 PRK14416 membrane protein; Pro 37.8 1.2E+02 0.0027 27.4 6.7 62 20-81 125-190 (200)
26 PF10031 DUF2273: Small integr 37.6 64 0.0014 22.8 3.9 40 29-68 10-49 (51)
27 PRK00220 putative glycerol-3-p 36.9 1.4E+02 0.0031 26.7 7.0 61 21-81 133-193 (198)
28 PF11755 DUF3311: Protein of u 35.8 38 0.00083 25.1 2.7 41 45-85 25-66 (66)
29 PRK14393 membrane protein; Pro 34.6 1.6E+02 0.0036 26.3 7.0 68 11-79 121-189 (194)
30 PRK10484 putative transporter; 34.2 1.8E+02 0.0039 29.4 8.1 23 21-43 423-445 (523)
31 PF01102 Glycophorin_A: Glycop 34.0 38 0.00083 28.3 2.7 26 31-59 63-88 (122)
32 PRK09395 actP acetate permease 33.2 99 0.0021 31.6 6.1 24 20-43 450-473 (551)
33 PRK14419 membrane protein; Pro 30.4 2.1E+02 0.0046 25.6 7.1 58 24-81 135-192 (199)
34 COG5336 Uncharacterized protei 30.0 1.1E+02 0.0025 25.3 4.7 35 31-67 54-90 (116)
35 PF11014 DUF2852: Protein of u 29.3 95 0.0021 25.8 4.2 40 30-72 8-47 (115)
36 PRK14407 membrane protein; Pro 29.3 2E+02 0.0043 26.3 6.8 70 10-79 143-212 (219)
37 PRK14392 membrane protein; Pro 28.6 2.1E+02 0.0046 25.9 6.8 65 14-79 125-189 (207)
38 PRK14412 membrane protein; Pro 27.7 2.3E+02 0.005 25.5 6.8 72 9-81 118-190 (198)
39 COG4589 Predicted CDP-diglycer 27.6 2.1E+02 0.0045 27.3 6.6 62 161-229 200-261 (303)
40 PRK13718 conjugal transfer pro 26.9 77 0.0017 24.7 3.0 42 29-77 39-80 (84)
41 PRK11624 cdsA CDP-diglyceride 26.4 3.6E+02 0.0078 25.4 8.2 82 134-229 159-241 (285)
42 PF05545 FixQ: Cbb3-type cytoc 26.1 48 0.001 22.8 1.7 28 51-78 14-41 (49)
43 PRK14406 membrane protein; Pro 26.1 2.4E+02 0.0051 25.5 6.6 60 20-81 126-185 (199)
44 PRK11099 putative inner membra 26.0 4.1E+02 0.0088 26.5 8.8 91 172-271 104-194 (399)
45 PRK14400 membrane protein; Pro 25.5 2.4E+02 0.0052 25.5 6.5 64 16-79 134-198 (201)
46 PF04971 Lysis_S: Lysis protei 25.2 1.5E+02 0.0033 22.4 4.3 18 56-73 42-59 (68)
47 PRK14396 membrane protein; Pro 24.6 2.9E+02 0.0063 24.7 6.8 62 16-78 124-185 (190)
48 KOG4727 U1-like Zn-finger prot 24.4 25 0.00054 31.3 0.0 51 218-272 47-107 (193)
49 PF04093 MreD: rod shape-deter 24.4 2.6E+02 0.0055 23.1 6.2 51 19-71 42-93 (160)
50 PRK12488 acetate permease; Pro 24.1 1.9E+02 0.0042 29.6 6.4 23 21-43 449-471 (549)
51 PF10031 DUF2273: Small integr 23.3 2.7E+02 0.006 19.6 5.6 42 175-226 9-50 (51)
52 KOG2962 Prohibitin-related mem 23.3 36 0.00078 31.9 0.8 15 160-174 71-85 (322)
53 PF01925 TauE: Sulfite exporte 22.8 5.2E+02 0.011 22.6 8.3 16 16-31 48-64 (240)
54 PRK14403 membrane protein; Pro 22.3 3.1E+02 0.0067 24.7 6.6 69 10-80 120-189 (196)
55 KOG4453 Predicted ER membrane 22.2 6.5E+02 0.014 23.7 8.6 40 140-190 169-209 (269)
56 PRK14398 membrane protein; Pro 21.8 3.2E+02 0.0068 24.5 6.5 66 11-78 121-186 (191)
57 COG0355 AtpC F0F1-type ATP syn 21.7 38 0.00083 28.6 0.6 21 140-161 26-46 (135)
58 PF06738 DUF1212: Protein of u 21.5 1.3E+02 0.0028 25.9 4.0 35 70-104 86-121 (193)
59 PRK14414 membrane protein; Pro 20.8 3.2E+02 0.007 25.0 6.4 64 12-75 126-192 (210)
60 TIGR02736 cbb3_Q_epsi cytochro 20.4 1.2E+02 0.0026 22.1 2.8 24 49-72 5-28 (56)
61 TIGR01528 NMN_trans_PnuC nicot 20.4 5.9E+02 0.013 22.3 9.1 54 10-63 7-61 (189)
No 1
>KOG4491 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.4e-86 Score=595.86 Aligned_cols=284 Identities=48% Similarity=0.749 Sum_probs=277.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhcChhHHHHHHHHHHhhhhhhhcchhhhhccccccccC-
Q 023093 4 FLNQTLIAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEG- 82 (287)
Q Consensus 4 ~~~~~~~a~~~~~~la~~a~~~ksLt~sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~~~~- 82 (287)
+++||+++++++++++..++||||||+||++++++||+++.+++.+||..|++||++||++||+|++.|+++|.+|+||
T Consensus 38 pp~RwlFsvvvp~li~~~~lkrkSld~SGa~~G~lV~filtIa~h~ff~sl~~fF~sss~~tkfr~~~k~r~~s~~~eg~ 117 (323)
T KOG4491|consen 38 PPWRWLFSVVVPVLIVSNGLKRKSLDHSGALGGLLVGFILTIANHSFFTSLLMFFLSSSKLTKFRGEVKKRLDSEYKEGL 117 (323)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHhcchhHHHHHHHHHccchhhhHHHHHHHHHHHHHhhcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCChhhHhhcchHHHHHHHHHHHhhCCCCcccCccchhHHHHHHHHHHHHHHhhhchhhhhhhh-ccCCCCceeeeCCc
Q 023093 83 GQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIGGILGHYCCCNGDTWSSELG-VLSDEQPRLITTFK 161 (287)
Q Consensus 83 g~R~~~QVlaNg~va~~~al~~~~~~~~~~~~~~~~~~~l~~~l~~a~~~~~A~a~aDTwASEiG-~Ls~~~PrlItt~k 161 (287)
|||||.||+|||++|+.++++|...+++.+.+.|+.+++..+|++++.++++||||+|||+||+| +||+++||+|||||
T Consensus 118 GQRNWvQVlCNggva~~Lally~~~~G~ge~~vDf~~~y~~swl~~~~~~a~ACcnGDTWsSElG~VLS~~~PrlItTw~ 197 (323)
T KOG4491|consen 118 GQRNWVQVLCNGGVATELALLYMIENGPGEIPVDFSKQYSASWLCLSLLAALACCNGDTWSSELGPVLSKSSPRLITTWE 197 (323)
T ss_pred CccchhhhhcCCcchHHHHHHHHHhcCCCccccchHHHHHHHHHHHHHHHHHHhcCCChhhhhhcchhccCCCceEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhcceecc
Q 023093 162 PVRRGTNGGVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGFCSV 241 (287)
Q Consensus 162 ~VppGTnGgVS~lG~~as~~G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~Gsl~DSlLGAtlQ~~~~~~~ 241 (287)
|||+|||||||..|++++++|+.++|+.|++.++++..|+.|.+.+||++|+++.++|++||++||+||||+|++++||.
T Consensus 198 ~Vp~GTNGGVt~~Gl~~sLlgGt~VG~~yf~t~l~tv~c~ldis~pQwpiIafgglAGL~GSlvDS~LGat~QfsG~~e~ 277 (323)
T KOG4491|consen 198 KVPVGTNGGVTVVGLVSSLLGGTFVGIAYFLTQLITVNCDLDISAPQWPIIAFGGLAGLLGSLVDSYLGATMQFSGFNEV 277 (323)
T ss_pred ecccCCCCCEeeHHHHHHHhccceeehHhhhhhhheeecccccCcccCcEeehhhHHHHHHHHHHHHhhhheeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCceeeeecccccccchhHHHHHHHHHHHHHHHhhhcC
Q 023093 242 RNKVVGKPGPTVKKISGLTILDNNAVNLVSILLTSLLTSIACKYIF 287 (287)
Q Consensus 242 ~~~v~~~~g~~~~~i~G~~~l~N~~VN~lstl~~al~~~~~~~~~~ 287 (287)
++|+|++||+++|||+|.++||||.||++|+++++++..+++.|+|
T Consensus 278 ~gkvV~~Pg~~vrhisG~~ILDNn~VNlvSsllt~~l~p~aa~~fw 323 (323)
T KOG4491|consen 278 RGKVVGKPGKKVRHISGVDILDNNGVNLVSSLLTSFLTPIAAVYFW 323 (323)
T ss_pred cCeeecCCCccceeecCcccccCCchhhHHHHHHHHHHHhhHhhcC
Confidence 9999999999999999999999999999999999999998888765
No 2
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=7.3e-73 Score=511.35 Aligned_cols=225 Identities=45% Similarity=0.686 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHH-HhcChhHHHHHHHHHHhhhhhhhcchhhhhccccccccCCCCChhh
Q 023093 11 AVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAH-IAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEGGQRNWIQ 89 (287)
Q Consensus 11 a~~~~~~la~~a~~~ksLt~sGa~aa~~vG~~~-~~~g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~~~~g~R~~~Q 89 (287)
+++++.++++++||||+||+||+++|+++|+++ ..+||+|+++|+.||++||++||+|+++|+++|++|+|+|+|||+|
T Consensus 1 Al~~~~~l~~~a~~~k~Lt~sGa~aa~~vG~~~~~~~g~~~~~~L~~FF~~ss~~Tk~~~~~K~~~~~~~~~~g~R~~~Q 80 (226)
T PF01940_consen 1 ALLLSLLLAILAYKKKSLTLSGALAAFLVGTLIYGFGGWPWFLLLLAFFISSSLATKYKKERKEKLGEAEKKGGRRDWWQ 80 (226)
T ss_pred CcHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCChHHHHHhcccccCCCCCChHH
Confidence 467889999999999999999999999999976 5789999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHhhCCCCcccCccchhHHHHHHHHHHHHHHhhhchhhhhhhhccCCCCceeeeCCcccCCCCCc
Q 023093 90 VLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIGGILGHYCCCNGDTWSSELGVLSDEQPRLITTFKPVRRGTNG 169 (287)
Q Consensus 90 VlaNg~va~~~al~~~~~~~~~~~~~~~~~~~l~~~l~~a~~~~~A~a~aDTwASEiG~Ls~~~PrlItt~k~VppGTnG 169 (287)
|+|||++|++++++|.+.+.. .+++ +..+|++++|||+|||||||||++||++||+|||||||||||||
T Consensus 81 VlaNg~~a~~~al~~~~~~~~--------~~~~---~~~~~~~s~A~a~aDTwASEiG~ls~~~P~lItt~k~V~~Gt~G 149 (226)
T PF01940_consen 81 VLANGGVAALCALLYAFFPST--------PAPL---LLLAFLGSIAAANADTWASEIGVLSKGPPRLITTFKRVPPGTSG 149 (226)
T ss_pred hhhccHHHHHHHHHHHHhccc--------chHH---HHHHHHHHHHHHhhhHHHHhhhhhcCCCCeEeeCCcCCCCCCCC
Confidence 999999999999999876511 1122 34589999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhcceecccceeecCC
Q 023093 170 GVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGFCSVRNKVVGKP 249 (287)
Q Consensus 170 gVS~lG~~as~~G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~Gsl~DSlLGAtlQ~~~~~~~~~~v~~~~ 249 (287)
|||++||+|+++|+++|++.+++..... .+.+.+++++|++||++||+||||+|+
T Consensus 150 gVS~lGt~as~~Ga~~Ia~~~~~~~~~~-----------~~~~~~~~~~G~~Gsl~DSlLGAtlQ~-------------- 204 (226)
T PF01940_consen 150 GVSLLGTLASLAGALLIALVAFLLGLIS-----------FPLVLLIALAGFLGSLLDSLLGATLQR-------------- 204 (226)
T ss_pred eechHHHHHHHHHHHHHHHHHHHHHccc-----------hHHHHHHHHHHHHHHHHHHHhhHHHhC--------------
Confidence 9999999999999999999876554211 112334579999999999999999995
Q ss_pred CCceeeeecccccccchhHHHHHHHHHHHH
Q 023093 250 GPTVKKISGLTILDNNAVNLVSILLTSLLT 279 (287)
Q Consensus 250 g~~~~~i~G~~~l~N~~VN~lstl~~al~~ 279 (287)
|++|+|||+|||++++++++++
T Consensus 205 --------G~~~l~N~~VN~lstl~~al~A 226 (226)
T PF01940_consen 205 --------GRGWLNNDAVNFLSTLIGALVA 226 (226)
T ss_pred --------CCCCcChhHHHHHHHHHHHHhC
Confidence 6789999999999999998864
No 3
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=100.00 E-value=2.1e-72 Score=510.20 Aligned_cols=232 Identities=30% Similarity=0.340 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHH-hcChhHHHHHHHHHHhhhhhhhcchhhhhccccccccCCC
Q 023093 6 NQTLIAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHI-AAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEGGQ 84 (287)
Q Consensus 6 ~~~~~a~~~~~~la~~a~~~ksLt~sGa~aa~~vG~~~~-~~g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~~~~g~ 84 (287)
++|.++++++.++++++||||+||+||+++|+++|++++ ..|++|+.+++.||++||++||+|+++|+++|..|+|+|+
T Consensus 2 ~~~~~a~~~~~~l~~~~~~~~~L~~sG~~~a~~vG~~~~~~~g~~~~~~ll~Ff~~sS~~Tk~~~~~K~~~~~~e~~gg~ 81 (237)
T TIGR00297 2 FLWLSAVILCVFLLALAAYAPLLDPWGYGHAWIMGVIIILFAGFRGLLVILAFFFLGSAVTRYGQEEKKAAGIAEKRSGQ 81 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHccCCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHhccHHHHHhcccccccCCC
Confidence 679999999999999999999999999999999999984 7899999999999999999999999999999999999999
Q ss_pred CChhhHhhcchHHHHHHHHHHHhhCCCCcccCccchhHHHHHHHHHHHHHHhhhchhhhhhhhccCCCCceeeeCCcccC
Q 023093 85 RNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIGGILGHYCCCNGDTWSSELGVLSDEQPRLITTFKPVR 164 (287)
Q Consensus 85 R~~~QVlaNg~va~~~al~~~~~~~~~~~~~~~~~~~l~~~l~~a~~~~~A~a~aDTwASEiG~Ls~~~PrlItt~k~Vp 164 (287)
|||+||+||++++++++++|.+.+.+ ++ ++..+|++++|||+|||||||||++|+++||+||||||||
T Consensus 82 R~~~qVlaNg~~~~~~al~~~~~~~~---------~~---~~~~~f~~s~A~a~aDT~ASEiG~ls~~~p~lItt~k~V~ 149 (237)
T TIGR00297 82 RGPKNVWGNGLTPALFALAIAFGPEW---------DL---WLALGYVASVATALSDTMASEIGKAYGKNPRLITTLQRVE 149 (237)
T ss_pred CCHHHHHHhhHHHHHHHHHHHhcccc---------hH---HHHHHHHHHHHHHHcchHHHhhhhccCCCCeEeecCccCC
Confidence 99999999999999999988654321 12 2345799999999999999999999999999999999999
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhcceecccce
Q 023093 165 RGTNGGVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGFCSVRNK 244 (287)
Q Consensus 165 pGTnGgVS~lG~~as~~G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~Gsl~DSlLGAtlQ~~~~~~~~~~ 244 (287)
||||||||++||+|+++|+++|++.+++.... +++.+.+++++|++||++||+||||+|.+
T Consensus 150 ~GT~GgVS~~Gt~As~~Ga~~I~~~~~~~~~~-----------~~~~~~~~~~aG~~Gsl~DSlLGAtlQ~~-------- 210 (237)
T TIGR00297 150 PGTDGAISVEGTLAGFAGALAIALLGYLLGLI-----------SFKGILFSTLAAFAGTNLDSLLGATLERK-------- 210 (237)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHhhc-----------chHHHHHHHHHHHHHHHHHHHHhHHHhhc--------
Confidence 99999999999999999999999866544321 12334466799999999999999999963
Q ss_pred eecCCCCceeeeecccccccchhHHHHHHHHHHHHHHHh
Q 023093 245 VVGKPGPTVKKISGLTILDNNAVNLVSILLTSLLTSIAC 283 (287)
Q Consensus 245 v~~~~g~~~~~i~G~~~l~N~~VN~lstl~~al~~~~~~ 283 (287)
| |+|||.||+++|+.+++++..++
T Consensus 211 -------------g--~l~N~~VN~l~t~~g~~~a~~~~ 234 (237)
T TIGR00297 211 -------------G--YLTNEHVNLIATFLGAIIGIGIE 234 (237)
T ss_pred -------------c--ccccHHHHHHHHHHHHHHHHHHh
Confidence 3 89999999999999999987653
No 4
>COG1836 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.8e-64 Score=453.98 Aligned_cols=237 Identities=32% Similarity=0.464 Sum_probs=213.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHH-HhcChhHHHHHHHHHHhhhhhhhcchhhhhccccccc
Q 023093 2 ETFLNQTLIAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAH-IAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFK 80 (287)
Q Consensus 2 ~~~~~~~~~a~~~~~~la~~a~~~ksLt~sGa~aa~~vG~~~-~~~g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~~ 80 (287)
|.++.+++.++++..+++..+||+|.||++|.++|+++|.++ ..+||.|+++|+.||++||.+||+|+|+|++++.+|+
T Consensus 7 ~~~~~~~l~all~~~~L~~la~~~k~Ld~~G~~~A~~lG~~i~~~~g~~~fllll~Ff~~g~l~Tk~~~~~K~~~gvaE~ 86 (247)
T COG1836 7 QMAIDPLLLALLLILFLGALAYKAKALDLSGSLSAILLGALIIVFGGFKWFLLLLIFFALGSLATKYKYEEKEALGVAEG 86 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 456789999999999999999999999999999999999987 5788999999999999999999999999999999999
Q ss_pred cCCCCChhhHhhcchHHHHHHHHHHHhhCCCCcccCccchhHHHHHHHHHHHHHHhhhchhhhhhhhccCCCCceeeeCC
Q 023093 81 EGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIGGILGHYCCCNGDTWSSELGVLSDEQPRLITTF 160 (287)
Q Consensus 81 ~~g~R~~~QVlaNg~va~~~al~~~~~~~~~~~~~~~~~~~l~~~l~~a~~~~~A~a~aDTwASEiG~Ls~~~PrlItt~ 160 (287)
++|+|+.+||++|+..|.+|+++|.+.|.+ + .+...+|++|+|+++|||||||||+.++++||+||||
T Consensus 87 ~~g~R~~~NV~gn~l~~~l~av~~~~~~~~----------~--~~~~~~~~~SvAta~aDT~ASEiG~~~~~~p~lITtf 154 (247)
T COG1836 87 RDGARSLENVLGNGLAALLFAVLYAIYPDP----------Q--LWFLGGFAASVATANADTLASEIGKAYGKRPRLITTF 154 (247)
T ss_pred ccccccHHHHhhccHHHHHHHHHHHhCCCc----------h--HHHHHHHHHHHHHHhhhHHHHHHhHhhCCCeEEEEee
Confidence 999999999999999999999999766542 1 1234589999999999999999999999999999999
Q ss_pred cccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhcceec
Q 023093 161 KPVRRGTNGGVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGFCS 240 (287)
Q Consensus 161 k~VppGTnGgVS~lG~~as~~G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~Gsl~DSlLGAtlQ~~~~~~ 240 (287)
||||||||||||+.||+|+++|+++|++.+++.++.. ...+..++++||+|+++||++|||+|.+|
T Consensus 155 krV~~Gt~GaVS~~GelAav~Ga~iIal~~~l~~~~~-----------~~~v~~vtlaGf~G~~iDSllGAtle~kg--- 220 (247)
T COG1836 155 KRVEPGTSGAVSLVGELAAVAGAFIIALLSYLVGYIS-----------LGGVLSVTLAGFAGTNIDSLLGATLERKG--- 220 (247)
T ss_pred eEcCCCCCCccchhhhHHHHHHHHHHHHHHHHHHhcc-----------cchhHHHHHHHHHhhhHHHHhhHHHHhhe---
Confidence 9999999999999999999999999999776555421 12334567999999999999999999865
Q ss_pred ccceeecCCCCceeeeecccccccchhHHHHHHHHHHHHHHHhh
Q 023093 241 VRNKVVGKPGPTVKKISGLTILDNNAVNLVSILLTSLLTSIACK 284 (287)
Q Consensus 241 ~~~~v~~~~g~~~~~i~G~~~l~N~~VN~lstl~~al~~~~~~~ 284 (287)
+||||+|||++|+.++++++.+.+
T Consensus 221 --------------------~LtN~~VNflaT~~ga~i~i~i~l 244 (247)
T COG1836 221 --------------------YLTNEGVNFLATFLGAIIGILIFL 244 (247)
T ss_pred --------------------eecccchhHHHHHHHHHHHHHHHH
Confidence 599999999999999999987665
No 5
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=93.83 E-value=0.31 Score=43.72 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=39.4
Q ss_pred HHHHHHhhhchhhhhhhhccCCCCceeeeCCcccCCCCCcccchhHHHHHHHHHHHHHHHH
Q 023093 130 ILGHYCCCNGDTWSSELGVLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIGLTF 190 (287)
Q Consensus 130 ~~~~~A~a~aDTwASEiG~Ls~~~PrlItt~k~VppGTnGgVS~lG~~as~~G~~~ig~~~ 190 (287)
+.+-...+.+|++|+=+|+..++++ .|-.|..=|++|++++++++.+++...
T Consensus 133 ~~~i~~~~~gD~~A~l~G~~fGk~~---------~~~~sp~KT~EGsi~~~i~~~i~~~~~ 184 (259)
T PF01148_consen 133 LIGILILGIGDSFAYLVGRRFGKHL---------APKISPKKTWEGSIAGFISSFIISFLL 184 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc---------CCCCCCCCCHHHHhHHHHHHHHHHHHH
Confidence 3456778899999999999987652 122333449999999999999887643
No 6
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=81.36 E-value=8.5 Score=34.88 Aligned_cols=50 Identities=26% Similarity=0.255 Sum_probs=40.2
Q ss_pred HHHHHHHhhhchhhhhhhhccCCCCceeeeCCcccCCCCCcccchhHHHHHHHHHHHHHH
Q 023093 129 GILGHYCCCNGDTWSSELGVLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIGL 188 (287)
Q Consensus 129 a~~~~~A~a~aDTwASEiG~Ls~~~PrlItt~k~VppGTnGgVS~lG~~as~~G~~~ig~ 188 (287)
+.++=+..+.+|+.||=+|+..+++++-.-+-| |+.|++|.+..++++..
T Consensus 116 ~~~~I~~l~~GD~lAsiiG~~~G~~~~~~~~~K----------SleGSla~fi~~~l~~~ 165 (216)
T COG0170 116 AIAGILVLALGDGLASIIGKRYGRHKRILGNGK----------SLEGSLAFFIASFLVLL 165 (216)
T ss_pred HHHHHHHHHHhhHHHHHhCcccCccccccCCCC----------chhhhHHHHHHHHHHHH
Confidence 355668889999999999999887755444444 89999999999888865
No 7
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=74.49 E-value=26 Score=32.47 Aligned_cols=91 Identities=11% Similarity=0.108 Sum_probs=59.6
Q ss_pred HHHHhhhchhhhhhhhccCCCCceeeeCCcccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhhcccchhhhh-hhHH
Q 023093 132 GHYCCCNGDTWSSELGVLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIAL-KQLL 210 (287)
Q Consensus 132 ~~~A~a~aDTwASEiG~Ls~~~PrlItt~k~VppGTnGgVS~lG~~as~~G~~~ig~~~~~~~~~~~~~~~~~~~-~~~~ 210 (287)
-....-.+|+.|+=.|+.-+++| -.|-.|-.-|++|.+.+++++.+++.......-.. ..+. ....
T Consensus 139 l~~~vw~~Di~Ayf~Gr~fGk~k--------l~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~~~~-----~~~~~~~~~ 205 (265)
T COG0575 139 LFLGVWAGDIGAYFVGRRFGKHK--------LAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSSL-----ILNIWTLLI 205 (265)
T ss_pred HHHHHHHHhhhHHHHHHHcCCCC--------CCCcCCCCCchHHhHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHH
Confidence 35677789999999999888776 23345556799999999999998876432111000 0000 0112
Q ss_pred HHHHHHHHhhhhhhHHHhhhhhhhh
Q 023093 211 VIPISAIAGLCGSLIDSLLGATLQF 235 (287)
Q Consensus 211 ~i~~~~~~G~~Gsl~DSlLGAtlQ~ 235 (287)
+..+..+.+.+|-++.|.+-=.+|-
T Consensus 206 l~~~~~l~~~lGDL~eS~iKR~~gv 230 (265)
T COG0575 206 LGLLLVLTSQLGDLFESYIKRLLGI 230 (265)
T ss_pred HHHHHHHHHHHhhHHHHHHHHccCC
Confidence 3334557888999999988765553
No 8
>PF04973 NMN_transporter: Nicotinamide mononucleotide transporter; InterPro: IPR006419 The PnuC protein of Escherichia coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see IPR006417 from INTERPRO). The extreme N- and C-terminal regions are poorly conserved. ; GO: 0006810 transport, 0016020 membrane
Probab=70.85 E-value=42 Score=29.15 Aligned_cols=88 Identities=19% Similarity=0.221 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhc-CCChhhhHHHHHHHHHHHhcChhHHHHHHHHHHhhhhhh--hcchhhhhccccccccCCCCCh
Q 023093 11 AVLISSLIAIRSYRRK-SLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLT--KVGEERKRRVDADFKEGGQRNW 87 (287)
Q Consensus 11 a~~~~~~la~~a~~~k-sLt~sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~~T--K~k~~~K~~l~~~~~~~g~R~~ 87 (287)
+.+++++-.+...|+| .==+-|.++.++-+.+-+-.+...-..+=.||+..+... +++++++++.+.+-++-.+|++
T Consensus 7 ~~i~g~l~v~l~~k~~~~~~~~giis~~~y~~i~~~~~ly~~~~lq~~~~~~~i~G~~~W~~~~~~~~~~~v~~~~~~~~ 86 (181)
T PF04973_consen 7 ASILGLLCVILAAKGNIWNWPFGIISSLLYAYIFYQAGLYGDMLLQLFYFIMSIYGWYQWKKGRDENDEVKVRRLSKKQW 86 (181)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccCcccceeeCCHHHH
Confidence 3344444444444444 444567777766666666677766677777777766643 3332222333333344456666
Q ss_pred hhHhhcchHHH
Q 023093 88 IQVLSNSGIAA 98 (287)
Q Consensus 88 ~QVlaNg~va~ 98 (287)
.+++.-..+..
T Consensus 87 ~~~~~~~~i~~ 97 (181)
T PF04973_consen 87 ILLLIGILIGT 97 (181)
T ss_pred HHHHHHHHHHH
Confidence 66665444443
No 9
>PRK14395 membrane protein; Provisional
Probab=56.24 E-value=61 Score=29.10 Aligned_cols=74 Identities=8% Similarity=0.085 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhcChhHHHHHHHHHHhhhhhhhcchhhhhccccccccCC
Q 023093 10 IAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEGG 83 (287)
Q Consensus 10 ~a~~~~~~la~~a~~~ksLt~sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~~~~g 83 (287)
..++............|..+.+..++++.+-...+..+......+....+.--.+-|.|++.||-+.-+|+|=+
T Consensus 119 ~~l~~~~v~~~~~~~tr~vSl~Si~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~rH~~NI~Rl~~g~E~k~~ 192 (195)
T PRK14395 119 ITVMAIVLFVLVVFLTRYVSVGSVLAALTVGILVFLFNEPMAYKVFAVIAVSGVVIRHRTNIQRVLKGTENKFN 192 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 33433344444556678888888887776665544332211111222223344667888888876665555533
No 10
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=52.50 E-value=8.7 Score=34.69 Aligned_cols=29 Identities=34% Similarity=0.609 Sum_probs=21.8
Q ss_pred hhhhhhhccCCCCceeee----CCcccCCCCCcccch
Q 023093 141 TWSSELGVLSDEQPRLIT----TFKPVRRGTNGGVTK 173 (287)
Q Consensus 141 TwASEiG~Ls~~~PrlIt----t~k~VppGTnGgVS~ 173 (287)
+++|.++.| ||.|| .+||||+|++|=.-+
T Consensus 152 ~F~~~VasL----pRIiTl~d~~i~~~~~~~ss~L~l 184 (211)
T COG3167 152 QFVSDVASL----PRIITLHDLKIKPVPEGKSSILNL 184 (211)
T ss_pred HHHHHHhhc----ceeeeeecceeccCCCCCcceEEe
Confidence 467778877 77777 478999999885443
No 11
>KOG4783 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.79 E-value=40 Score=27.24 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=19.2
Q ss_pred cccchhHHHHHHHHHHHH-HHHhhhcC
Q 023093 262 LDNNAVNLVSILLTSLLT-SIACKYIF 287 (287)
Q Consensus 262 l~N~~VN~lstl~~al~~-~~~~~~~~ 287 (287)
++|+-+|+.|++++.+.- ..+|+|+|
T Consensus 60 is~~da~iySaI~aVVavHvalglyiy 86 (102)
T KOG4783|consen 60 ISEVDADIYSAICAVVAVHVALGLYIY 86 (102)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999988765532 46677765
No 12
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=49.95 E-value=23 Score=31.69 Aligned_cols=29 Identities=28% Similarity=0.576 Sum_probs=17.1
Q ss_pred eeCCc---ccCCCCCc-ccchhHHHHHHHHHHH
Q 023093 157 ITTFK---PVRRGTNG-GVTKAGLLAAVAAGSV 185 (287)
Q Consensus 157 Itt~k---~VppGTnG-gVS~lG~~as~~G~~~ 185 (287)
||.|+ -|.|||+| |+--.-.++++.|+++
T Consensus 115 iT~~~Qe~YVtpGTeGHGlPTV~FVSGiiGg~L 147 (230)
T COG4060 115 ITKWDQEAYVTPGTEGHGLPTVSFVSGIIGGLL 147 (230)
T ss_pred CCCCcccceeCCCCCCCCCceeeeehhhhhhhh
Confidence 66664 58999998 3333333444444444
No 13
>PRK04032 hypothetical protein; Provisional
Probab=49.91 E-value=71 Score=27.93 Aligned_cols=58 Identities=21% Similarity=0.382 Sum_probs=34.0
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhHH-HHHHHHHHhhhhhhHHHhh
Q 023093 167 TNGGVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLL-VIPISAIAGLCGSLIDSLL 229 (287)
Q Consensus 167 TnGgVS~lG~~as~~G~~~ig~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~G~~Gsl~DSlL 229 (287)
.|=.-|+.|.+.+++++.+.+..+. .+...... ...++. .-.+..++|.+|.++.|.+
T Consensus 33 iSP~KTwEG~iGGv~~~~l~~~~~~---~~~~~~~~--~~~~~~~~g~li~v~~~~GDL~eS~i 91 (159)
T PRK04032 33 LGDGKTWRGLIGGILFGTLVGLIQN---LLVPAYIG--ALGVAIILAFLLSFGALLGDMLGSFI 91 (159)
T ss_pred CCCCCcHHHhHHHHHHHHHHHHHHH---HHHccchh--HHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445699999999999988876442 11111000 111111 1123357888888888876
No 14
>PLN02953 phosphatidate cytidylyltransferase
Probab=49.13 E-value=81 Score=31.56 Aligned_cols=84 Identities=13% Similarity=0.127 Sum_probs=51.0
Q ss_pred HHHhhhchhhhhhhhccCCCCceeeeCCcccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHH
Q 023093 133 HYCCCNGDTWSSELGVLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLLVI 212 (287)
Q Consensus 133 ~~A~a~aDTwASEiG~Ls~~~PrlItt~k~VppGTnGgVS~lG~~as~~G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~i 212 (287)
-...-.+||.|=-.|...+++|. . ++.|+ -|+.|.+.|++++.+++..+... ... +... ......-
T Consensus 275 ~~~vw~~Di~AY~~G~~fGk~kl--~---~ISPk----KTwEG~iGGil~~vlv~~l~~~~---l~~-~~~~-~~~i~lg 340 (403)
T PLN02953 275 FSGVIATDTFAFLGGKAFGRTPL--T---SISPK----KTWEGTFVGLVGCIAITILLSKS---LSW-PQSL-FSSIAFG 340 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC--C---cCCCC----CeeeeehhHHHHHHHHHHHHHHH---Hcc-chHH-HHHHHHH
Confidence 45566789999999988765552 1 45553 48999999999999888654211 110 0000 0001111
Q ss_pred HHHHHHhhhhhhHHHhhh
Q 023093 213 PISAIAGLCGSLIDSLLG 230 (287)
Q Consensus 213 ~~~~~~G~~Gsl~DSlLG 230 (287)
.+..+.|.+|.++.|.+=
T Consensus 341 ~li~~~~~~GDL~eS~iK 358 (403)
T PLN02953 341 FLNFFGSVFGDLTESMIK 358 (403)
T ss_pred HHHHHHHHhhHHHHHHHh
Confidence 233477788888888763
No 15
>PRK14402 membrane protein; Provisional
Probab=46.15 E-value=78 Score=28.53 Aligned_cols=71 Identities=10% Similarity=0.054 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhcChhHHHHHHHHHHhhhhhhhcchhhhhcccccccc
Q 023093 11 AVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKE 81 (287)
Q Consensus 11 a~~~~~~la~~a~~~ksLt~sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~~~ 81 (287)
.++............|..+.+..+++...-...+..+.+....+....+..-.+-|+|++.||-+.-+|+|
T Consensus 122 ~l~~~~v~~i~~~itr~vSl~Si~a~~~~~~~~~~~~~~~~~~~~~~~la~lii~rHr~NI~Rl~~g~E~k 192 (198)
T PRK14402 122 ALLTFPVGVACMWLTRFVSAGSMIGAVTAGVLALALGRPLWEVATVVLLAALLFWTHRENIRRLQAGTERR 192 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 33333333344555677788777766655544433221111122223344456678888877766555544
No 16
>PHA02723 hypothetical protein; Provisional
Probab=44.90 E-value=3.6 Score=30.72 Aligned_cols=13 Identities=38% Similarity=0.647 Sum_probs=11.2
Q ss_pred cccccchhHHHHH
Q 023093 260 TILDNNAVNLVSI 272 (287)
Q Consensus 260 ~~l~N~~VN~lst 272 (287)
++|+||.|||+.+
T Consensus 41 dilnn~ivnfimc 53 (77)
T PHA02723 41 DILNNDIVNFIMC 53 (77)
T ss_pred hhhcccceeeeEe
Confidence 6899999999853
No 17
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=44.58 E-value=4.6e+02 Score=28.75 Aligned_cols=31 Identities=23% Similarity=-0.078 Sum_probs=20.8
Q ss_pred HHHHHhhhhhhHHHhhhhhhhhcceecccce
Q 023093 214 ISAIAGLCGSLIDSLLGATLQFSGFCSVRNK 244 (287)
Q Consensus 214 ~~~~~G~~Gsl~DSlLGAtlQ~~~~~~~~~~ 244 (287)
...+.|+.+.+.-..+-+.+|..--.+.+++
T Consensus 340 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~ 370 (1140)
T PRK06814 340 DLFGLAAAGGLYIVPLFAALQAWANPAHRAR 370 (1140)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhCCccccee
Confidence 3456788888888888888897543333443
No 18
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=43.90 E-value=80 Score=26.78 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHhhhhhhhc
Q 023093 34 VSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKV 67 (287)
Q Consensus 34 ~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~~TK~ 67 (287)
.+|+.+| +....++++..-+++|-+.|-++.-+
T Consensus 32 ~aA~~vg-~~~l~~~~~~~q~v~f~~lsv~~~~l 64 (140)
T COG1585 32 LAALAVG-LALLLLLSWWLQLVLFAILSVLLALL 64 (140)
T ss_pred HHHHHHH-HHHHccchHHHHHHHHHHHHHHHHHH
Confidence 6788888 44456666666666666666554444
No 19
>PRK14405 membrane protein; Provisional
Probab=43.59 E-value=96 Score=27.96 Aligned_cols=59 Identities=3% Similarity=-0.077 Sum_probs=31.2
Q ss_pred HHhcCCChhhhHHHHHHHHHHHhcChhHHHHHHHHHHhhhhhhhcchhhhhcccccccc
Q 023093 23 YRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKE 81 (287)
Q Consensus 23 ~~~ksLt~sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~~~ 81 (287)
...|..+.+...++...-...+..+......+....+.--..-|+|++.|+-+.-+|+|
T Consensus 136 ~itr~vSl~si~~~~~~~~~~~~~~~~~~~~~~~~~l~~lvi~rHr~NI~rl~~g~E~k 194 (202)
T PRK14405 136 VITRYVSLGSLLFVTLTPVLLYIFDYPIPYIWLSLIIAIFAFWRHRTNIVRLLSGTENK 194 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 44677777766666555444333221111122223344445677788777766655544
No 20
>COG4854 Predicted membrane protein [Function unknown]
Probab=42.39 E-value=37 Score=28.29 Aligned_cols=68 Identities=21% Similarity=0.123 Sum_probs=43.6
Q ss_pred hhhhHHHHHHHHHH-Hh-cChhHHHHHHHHHHhhhhhhhcchhhhhcccccc-----ccCCCCChhhHhhcchHHH
Q 023093 30 FSGAVSGFIVMTAH-IA-AGSRFGALLLVFFFTSSKLTKVGEERKRRVDADF-----KEGGQRNWIQVLSNSGIAA 98 (287)
Q Consensus 30 ~sGa~aa~~vG~~~-~~-~g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~-----~~~g~R~~~QVlaNg~va~ 98 (287)
.-+.+...++|.++ +. ..-.|++.++.||.---.++-+|++..+-+||+- ++. .|.-.||++-|..-.
T Consensus 9 ~~l~~ivm~~GA~~g~a~~sGn~~iav~af~ag~~~l~l~k~Rv~~vvEDER~lrvse~a-Sr~TiqV~~is~Al~ 83 (126)
T COG4854 9 KILFAIVMAVGAAVGYAVESGNWFIAVIAFFAGAALLSLVKRRVDEVVEDERTLRVSERA-SRRTIQVFSISAALG 83 (126)
T ss_pred HHHHHHHHHHHHHHheeecCCCeehHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-hheeEEEEEehHHHH
Confidence 34555556666655 32 2334789999999988788888877766555542 233 455569998774433
No 21
>PRK14397 membrane protein; Provisional
Probab=42.03 E-value=1e+02 Score=28.37 Aligned_cols=57 Identities=9% Similarity=-0.028 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCChhhhHHHHHHHHHHHhcChhHHHHHHHHHHhhhhhhhcchhhhhcc
Q 023093 18 IAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRV 75 (287)
Q Consensus 18 la~~a~~~ksLt~sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l 75 (287)
........|..+.+..++++.+-...+..+.... .+....+.--.+-|.|.+.||-+
T Consensus 128 f~~v~~itr~vSL~Si~a~~~~pi~~~~~~~~~~-~~~~~~~a~lvi~rHr~NI~RL~ 184 (222)
T PRK14397 128 CLLVIWRSGFVSLGSLTLVTALPVMLLITGKWKL-IPLALVVMALVYWSHRENIGRLA 184 (222)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHcchHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556788888887776666555444332211 11112233334556655555443
No 22
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=41.58 E-value=12 Score=24.77 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=5.2
Q ss_pred hhcceecccceee
Q 023093 234 QFSGFCSVRNKVV 246 (287)
Q Consensus 234 Q~~~~~~~~~~v~ 246 (287)
|.+|||+-|++-+
T Consensus 1 m~ryyCdyC~~~~ 13 (38)
T PF06220_consen 1 MPRYYCDYCKKYL 13 (38)
T ss_dssp --S-B-TTT--B-
T ss_pred CcCeeccccccee
Confidence 6789999998755
No 23
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=38.46 E-value=1.1e+02 Score=28.34 Aligned_cols=17 Identities=12% Similarity=0.389 Sum_probs=11.5
Q ss_pred ChhhHhhcchHHHHHHH
Q 023093 86 NWIQVLSNSGIAAVLVV 102 (287)
Q Consensus 86 ~~~QVlaNg~va~~~al 102 (287)
...-++++|.+...+.+
T Consensus 74 ~~~li~~sGaVGamiMm 90 (240)
T PRK00968 74 GIALILASGAVGAMIMM 90 (240)
T ss_pred cchhhhhcchHHHHHHH
Confidence 44577888888776544
No 24
>TIGR00023 acyl-phosphate glycerol 3-phosphate acyltransferase. This model represents the full length of acylphosphate:glycerol 3-phosphate acyltransferase, and integral membrane protein about 200 amino acids in length, called PlsY in Streptococcus pneumoniae, YneS in Bacillus subtilis, and YgiH in E. coli. It is found in a single copy in a large number of bacteria, including the Mycoplasmas but not Mycobacteria or spirochetes, for example. Its partner is PlsX (see TIGR00182), and the pair can replace PlsB for synthesizing 1-acylglycerol-3-phosphate.
Probab=38.45 E-value=1.6e+02 Score=26.40 Aligned_cols=61 Identities=8% Similarity=0.019 Sum_probs=31.4
Q ss_pred HHHHhcCCChhhhHHHHHHHHHHHhcChhHHHHHHHHHHhhhhhhhcchhhhhccccccccC
Q 023093 21 RSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEG 82 (287)
Q Consensus 21 ~a~~~ksLt~sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~~~~ 82 (287)
.....|..+.+..++++.+-...+..+... ..+....+.--.+-|+|++.||-+..+|+|=
T Consensus 133 ~~~~tr~vSl~Si~~~~~~~~~~~~~~~~~-~~~~~~~~~~lii~rHr~NI~Rl~~g~E~k~ 193 (196)
T TIGR00023 133 VTLVTKYVSLSSIVTAIVLPFYVLWFHLPY-LYIPVTLLLIFVIYRHRANIQRLLNGTEPKV 193 (196)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 344556777777666555544433322221 1122233344456777777777665555443
No 25
>PRK14416 membrane protein; Provisional
Probab=37.84 E-value=1.2e+02 Score=27.41 Aligned_cols=62 Identities=8% Similarity=-0.029 Sum_probs=35.0
Q ss_pred HHHHHhcCCChhhhHHHHHHHHHHHhcChhHHH----HHHHHHHhhhhhhhcchhhhhcccccccc
Q 023093 20 IRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGA----LLLVFFFTSSKLTKVGEERKRRVDADFKE 81 (287)
Q Consensus 20 ~~a~~~ksLt~sGa~aa~~vG~~~~~~g~~~~~----~Ll~Ff~~sS~~TK~k~~~K~~l~~~~~~ 81 (287)
......|..+.+..++++..-+..+..+-+... .++..++.--..-|.|++.|+-++.+|+|
T Consensus 125 i~~~itr~vSL~Si~a~~~~p~~~~~~~~~~~~~~~~~~l~~~i~~~v~~~h~~nI~r~~~~~e~k 190 (200)
T PRK14416 125 IPLALTRNIALATGIALFSLPFLVWYGSHSEFATLISVLLFLMIGIKFVLDNRKSLRDPANRRNLI 190 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhHhhHHHHHcCCccc
Confidence 344557788888888777766655433322222 33344444444557777777666555544
No 26
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=37.55 E-value=64 Score=22.82 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=27.0
Q ss_pred ChhhhHHHHHHHHHHHhcChhHHHHHHHHHHhhhhhhhcc
Q 023093 29 NFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVG 68 (287)
Q Consensus 29 t~sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~~TK~k 68 (287)
..-|++.++++|.+....|..-.+.+++|-..+...-|+.
T Consensus 10 ~iiG~~~G~ila~l~l~~GF~~tl~i~~~~~iG~~iG~~~ 49 (51)
T PF10031_consen 10 KIIGGLIGLILALLILTFGFWKTLFILLFAAIGYYIGKYL 49 (51)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457788888888777778665566666666666665543
No 27
>PRK00220 putative glycerol-3-phosphate acyltransferase PlsY; Provisional
Probab=36.91 E-value=1.4e+02 Score=26.73 Aligned_cols=61 Identities=7% Similarity=-0.000 Sum_probs=29.3
Q ss_pred HHHHhcCCChhhhHHHHHHHHHHHhcChhHHHHHHHHHHhhhhhhhcchhhhhcccccccc
Q 023093 21 RSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKE 81 (287)
Q Consensus 21 ~a~~~ksLt~sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~~~ 81 (287)
.....|..+.+..+++...-...+..+......+....+..-.+-|+|.+.||-+..+|+|
T Consensus 133 ~~~~tr~vsl~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~rH~~Ni~rl~~g~E~k 193 (198)
T PRK00220 133 VALLTRYSSLAALVAALIAPIYVWWFPPDWQFTIPVALLSVLIIYRHRDNIQRLLAGTESK 193 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 3344566666666655554443333322101112222233345667777777766555444
No 28
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=35.82 E-value=38 Score=25.06 Aligned_cols=41 Identities=20% Similarity=0.109 Sum_probs=22.7
Q ss_pred hcChhH-HHHHHHHHHhhhhhhhcchhhhhccccccccCCCC
Q 023093 45 AAGSRF-GALLLVFFFTSSKLTKVGEERKRRVDADFKEGGQR 85 (287)
Q Consensus 45 ~~g~~~-~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~~~~g~R 85 (287)
..|.++ .+-.++..+.+|..+-.-++.+++.++..++|+.|
T Consensus 25 v~G~Pff~~w~~~wv~lts~~~~~~y~l~~~~~~~~~~g~~~ 66 (66)
T PF11755_consen 25 VFGMPFFYWWQLAWVVLTSVCMAIVYRLDEDRRAAREEGETR 66 (66)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccCCC
Confidence 456663 34555666667776665555543334444555555
No 29
>PRK14393 membrane protein; Provisional
Probab=34.56 E-value=1.6e+02 Score=26.30 Aligned_cols=68 Identities=7% Similarity=0.005 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhc-ChhHHHHHHHHHHhhhhhhhcchhhhhcccccc
Q 023093 11 AVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAA-GSRFGALLLVFFFTSSKLTKVGEERKRRVDADF 79 (287)
Q Consensus 11 a~~~~~~la~~a~~~ksLt~sGa~aa~~vG~~~~~~-g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~ 79 (287)
.++............|..+.+..+++...-...+.. +.... .+....+..-.+-|.|++.||-+.-+|
T Consensus 121 ~l~~~~~~~~~~~~tr~vSl~si~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lii~rHr~NI~Rl~~g~E 189 (194)
T PRK14393 121 VLGALAIFVLLVAKWRYVSLGSITAAAAMPLLVAFTEGSPLL-VAMTVVIALIVIFKHRENIQRLRAGTE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcchHH-HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333333344455667888888777766555443332 22211 111222333446677766666554433
No 30
>PRK10484 putative transporter; Provisional
Probab=34.23 E-value=1.8e+02 Score=29.45 Aligned_cols=23 Identities=9% Similarity=-0.126 Sum_probs=18.2
Q ss_pred HHHHhcCCChhhhHHHHHHHHHH
Q 023093 21 RSYRRKSLNFSGAVSGFIVMTAH 43 (287)
Q Consensus 21 ~a~~~ksLt~sGa~aa~~vG~~~ 43 (287)
.+.--|..|..|++++.++|.+.
T Consensus 423 lgl~wkr~n~~ga~~g~i~G~~~ 445 (523)
T PRK10484 423 VGFFTKRVPALAAKVALGFGIIL 445 (523)
T ss_pred HHHHhCcCChHHHHHHHHHHHHH
Confidence 34445679999999999999865
No 31
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=33.99 E-value=38 Score=28.31 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHhcChhHHHHHHHHHH
Q 023093 31 SGAVSGFIVMTAHIAAGSRFGALLLVFFF 59 (287)
Q Consensus 31 sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~ 59 (287)
.|+++++++|.+- |.-..++|+.|++
T Consensus 63 ~~~i~~Ii~gv~a---GvIg~Illi~y~i 88 (122)
T PF01102_consen 63 EPAIIGIIFGVMA---GVIGIILLISYCI 88 (122)
T ss_dssp -TCHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred ccceeehhHHHHH---HHHHHHHHHHHHH
Confidence 4677777777653 3223455555555
No 32
>PRK09395 actP acetate permease; Provisional
Probab=33.18 E-value=99 Score=31.62 Aligned_cols=24 Identities=29% Similarity=0.156 Sum_probs=18.9
Q ss_pred HHHHHhcCCChhhhHHHHHHHHHH
Q 023093 20 IRSYRRKSLNFSGAVSGFIVMTAH 43 (287)
Q Consensus 20 ~~a~~~ksLt~sGa~aa~~vG~~~ 43 (287)
..+..-|..|..|++++.++|.+.
T Consensus 450 llglfwkr~~~~gA~ag~i~G~~~ 473 (551)
T PRK09395 450 LLSMYWKGLTTRGAVIGGWLGLIS 473 (551)
T ss_pred HHHHhcCCCchhhHHHHHHHHHHH
Confidence 345555669999999999999764
No 33
>PRK14419 membrane protein; Provisional
Probab=30.35 E-value=2.1e+02 Score=25.63 Aligned_cols=58 Identities=5% Similarity=-0.031 Sum_probs=26.8
Q ss_pred HhcCCChhhhHHHHHHHHHHHhcChhHHHHHHHHHHhhhhhhhcchhhhhcccccccc
Q 023093 24 RRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKE 81 (287)
Q Consensus 24 ~~ksLt~sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~~~ 81 (287)
..|..+.+..++++..-...+..+......+....+.--.+-|+|++.|+-+..+|+|
T Consensus 135 itr~vsl~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~H~~Ni~rl~~g~E~k 192 (199)
T PRK14419 135 LSRIVSLSSISAAIALPLLMFLLNIPLPYILFSLAAGLLVIWRHRSNIERLLAGTEPK 192 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 3456677666655555444333221111111122223334567777777655544443
No 34
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.03 E-value=1.1e+02 Score=25.27 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHH--HhcChhHHHHHHHHHHhhhhhhhc
Q 023093 31 SGAVSGFIVMTAH--IAAGSRFGALLLVFFFTSSKLTKV 67 (287)
Q Consensus 31 sGa~aa~~vG~~~--~~~g~~~~~~Ll~Ff~~sS~~TK~ 67 (287)
+|.+-|+.+|+++ +.+.-+|+ |++|.+++-.+--.
T Consensus 54 sGilVGa~iG~llD~~agTsPwg--lIv~lllGf~AG~l 90 (116)
T COG5336 54 SGILVGAGIGWLLDKFAGTSPWG--LIVFLLLGFGAGVL 90 (116)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHHHHH
Confidence 5666666666665 33334455 55666665554333
No 35
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=29.31 E-value=95 Score=25.79 Aligned_cols=40 Identities=8% Similarity=0.125 Sum_probs=26.6
Q ss_pred hhhhHHHHHHHHHHHhcChhHHHHHHHHHHhhhhhhhcchhhh
Q 023093 30 FSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERK 72 (287)
Q Consensus 30 ~sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~~TK~k~~~K 72 (287)
.+..+++.++|++++ |+-++.+++|-+-|-.+-.++++.+
T Consensus 8 ~~a~Ia~mVlGFi~f---WPlGla~Lay~iw~~rm~~~~~~~~ 47 (115)
T PF11014_consen 8 KPAWIAAMVLGFIVF---WPLGLALLAYMIWGKRMFGFKRSCR 47 (115)
T ss_pred chHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhcccc
Confidence 356788999999886 5556677777776755554444333
No 36
>PRK14407 membrane protein; Provisional
Probab=29.26 E-value=2e+02 Score=26.33 Aligned_cols=70 Identities=7% Similarity=0.051 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhcChhHHHHHHHHHHhhhhhhhcchhhhhcccccc
Q 023093 10 IAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADF 79 (287)
Q Consensus 10 ~a~~~~~~la~~a~~~ksLt~sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~ 79 (287)
..++............|..+.+..+++...-...+..+......++...+.--.+-|+|++.||-+.-+|
T Consensus 143 ~~l~~~~~~~~v~~~tr~vSL~Si~a~~~~p~~~~~~~~~~~~~~~~~~~~~lvi~rHr~NI~Rl~~G~E 212 (219)
T PRK14407 143 VGLGAATVFGVALAISRIVSLSSMLAALTAIALVCGLEQPLPYRLLVIAGGVYVIVRHRANIRRLLAGTE 212 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3333344444556677888888877776655544332211111111122333456677777776555443
No 37
>PRK14392 membrane protein; Provisional
Probab=28.64 E-value=2.1e+02 Score=25.91 Aligned_cols=65 Identities=6% Similarity=-0.055 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhcChhHHHHHHHHHHhhhhhhhcchhhhhcccccc
Q 023093 14 ISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADF 79 (287)
Q Consensus 14 ~~~~la~~a~~~ksLt~sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~ 79 (287)
............|..+.+..+++...-...+..+ .+...+....+.--.+-|+|++.|+-+.-+|
T Consensus 125 ~~~i~~~~~~~tr~vSl~Si~~~~~~~~~~~~~~-~~~~~~~~~~~~~lvi~rHr~NI~Rl~~g~E 189 (207)
T PRK14392 125 ASAIWFSLILLTSMVSVASMIGMVLITIISLVYH-DWLLTTVACGLTVVVFYRHRSNIKRIKAGTE 189 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3333444455566677776666655554433322 1111122223333445666666666554433
No 38
>PRK14412 membrane protein; Provisional
Probab=27.70 E-value=2.3e+02 Score=25.50 Aligned_cols=72 Identities=8% Similarity=0.055 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhc-ChhHHHHHHHHHHhhhhhhhcchhhhhcccccccc
Q 023093 9 LIAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAA-GSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKE 81 (287)
Q Consensus 9 ~~a~~~~~~la~~a~~~ksLt~sGa~aa~~vG~~~~~~-g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~~~ 81 (287)
...++............|..+.+..+++...-...+.. +.+.. .+....+..-.+-|+|.+.||-+.-+|+|
T Consensus 118 ~~~l~~~~v~~~~~~~tr~vSl~Si~a~~~~~~~~~~~~~~~~~-~~~~~~~~~lii~rHr~NI~Rl~~g~E~k 190 (198)
T PRK14412 118 LLGIIALAIGVAIIALTKYVSLGSITGSVTFVLLNAIFWNSTQL-FVFSLILASLAIFQHRSNIKRLLAGTESK 190 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 33343444444455667888888777766554443322 21111 11122233345677777777666554444
No 39
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=27.56 E-value=2.1e+02 Score=27.27 Aligned_cols=62 Identities=19% Similarity=0.371 Sum_probs=34.5
Q ss_pred cccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHhhhhhhHHHhh
Q 023093 161 KPVRRGTNGGVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLL 229 (287)
Q Consensus 161 k~VppGTnGgVS~lG~~as~~G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~Gsl~DSlL 229 (287)
+||.|-.|=.-|+.|.+.+.+-....+.. ..++++ .+.-....+-+.++ +.||+|-++=|=+
T Consensus 200 ~Ki~P~vSPnKTveGl~GGilt~~~~~~~---l~~lTp---~~~lqa~~~~~~I~-l~GF~GdlvmSai 261 (303)
T COG4589 200 RKIVPKVSPNKTVEGLIGGILTTMIASAI---LGLLTP---LNTLQALLAGLLIG-LSGFCGDLVMSAI 261 (303)
T ss_pred cccCCCcCCcchHHHHhhhHHHHHHHHHH---HHHhCC---CcHHHHHHHHHHHH-HHHhhhHHHHHHH
Confidence 46777777677777777776666666542 233332 11111111222344 8999998876643
No 40
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=26.91 E-value=77 Score=24.74 Aligned_cols=42 Identities=24% Similarity=0.472 Sum_probs=21.0
Q ss_pred ChhhhHHHHHHHHHHHhcChhHHHHHHHHHHhhhhhhhcchhhhhcccc
Q 023093 29 NFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDA 77 (287)
Q Consensus 29 t~sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~ 77 (287)
|-+..+.|.+ +++..|. .+++.||+ =|.+||..++.|++-|+
T Consensus 39 Ta~d~l~a~~---iI~~~gv---~~~~ly~f-fs~Ltkl~~~d~~ks~~ 80 (84)
T PRK13718 39 TADDMLAAVF---VILYSGV---LLFILYFF-FSALTKLQKHDERKSDE 80 (84)
T ss_pred chhHHHHHHH---HHHHHhH---HHHHHHHH-HHHHHHHHhcccccchh
Confidence 4455555543 3444453 22222222 25788887766665443
No 41
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=26.42 E-value=3.6e+02 Score=25.40 Aligned_cols=82 Identities=26% Similarity=0.374 Sum_probs=50.7
Q ss_pred HHhhhchhhhhhhhccCCCCceeeeCCcccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhHH-HH
Q 023093 134 YCCCNGDTWSSELGVLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLL-VI 212 (287)
Q Consensus 134 ~A~a~aDTwASEiG~Ls~~~PrlItt~k~VppGTnGgVS~lG~~as~~G~~~ig~~~~~~~~~~~~~~~~~~~~~~~-~i 212 (287)
+.+-.+||.|==.|+.-+++ ++ ..++.|+ =|++|.+.+++++.+++..+. .+.. .+.+..++. .-
T Consensus 159 ~~vw~sDt~AYf~Gr~fGk~-KL---~P~ISPk----KTwEG~iGg~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~ 224 (285)
T PRK11624 159 ILVWGADSGAYMFGKLFGKH-KL---APKVSPG----KTWEGFIGGLATAAVISWLFG---MWAP---LDVAPVTLLICS 224 (285)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CC---CCcCCCC----CchhhhHHHHHHHHHHHHHHH---HHHc---ccccHHHHHHHH
Confidence 55778899999999877643 33 2355554 389999999999998876442 1111 011111111 11
Q ss_pred HHHHHHhhhhhhHHHhh
Q 023093 213 PISAIAGLCGSLIDSLL 229 (287)
Q Consensus 213 ~~~~~~G~~Gsl~DSlL 229 (287)
.+..+.|.+|-+++|.+
T Consensus 225 ~~~~~~~~~GDL~ES~l 241 (285)
T PRK11624 225 IVAALASVLGDLTESMF 241 (285)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 22346788888888876
No 42
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=26.10 E-value=48 Score=22.78 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhhhhhcchhhhhccccc
Q 023093 51 GALLLVFFFTSSKLTKVGEERKRRVDAD 78 (287)
Q Consensus 51 ~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~ 78 (287)
+.++++.++.+-.+--+++++|++.|+.
T Consensus 14 ~~v~~~~~F~gi~~w~~~~~~k~~~e~a 41 (49)
T PF05545_consen 14 GTVLFFVFFIGIVIWAYRPRNKKRFEEA 41 (49)
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHH
Confidence 3444444455677777777778777654
No 43
>PRK14406 membrane protein; Provisional
Probab=26.05 E-value=2.4e+02 Score=25.48 Aligned_cols=60 Identities=10% Similarity=0.111 Sum_probs=31.6
Q ss_pred HHHHHhcCCChhhhHHHHHHHHHHHhcChhHHHHHHHHHHhhhhhhhcchhhhhcccccccc
Q 023093 20 IRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKE 81 (287)
Q Consensus 20 ~~a~~~ksLt~sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~~~ 81 (287)
......|..+.+..+++..+-...+..+... ......+.--.+-|+|++.|+-+..+|+|
T Consensus 126 ~~~~~tr~vSl~Si~~~~~~~~~~~~~~~~~--~~~~~~~~~lii~rHr~NI~Rl~~g~E~k 185 (199)
T PRK14406 126 AIVALTKYVSLASIIGLLAASIFTFFFGKDY--WVIFLALTLFSVLRHKENIKRLLNGNERK 185 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3344456677777666665554443333211 11122233345678888777766655544
No 44
>PRK11099 putative inner membrane protein; Provisional
Probab=26.01 E-value=4.1e+02 Score=26.54 Aligned_cols=91 Identities=20% Similarity=0.227 Sum_probs=49.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhcceecccceeecCCCC
Q 023093 172 TKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGFCSVRNKVVGKPGP 251 (287)
Q Consensus 172 S~lG~~as~~G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~Gsl~DSlLGAtlQ~~~~~~~~~~v~~~~g~ 251 (287)
+..-.+.+++|++++++-.. +..-|+........+........+++|-++-+++|+.+..+.|-+..+|. +
T Consensus 104 ~~~~~~~~~~GG~lmg~Gar----la~GC~ig~~lsg~a~~sl~~~~~~~~~~~G~~~g~~~~~~~~~~~~~~~-----~ 174 (399)
T PRK11099 104 SRIRILQALIGGIIAGFGAR----LAMGCNLAAFFTGIPQFSLHAWFFALATAIGSYFGAKFTLLPFFRIPVKL-----Q 174 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHH----HcCCChHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-----c
Confidence 45667889999999987432 22233332211111111222345566677778889988887766332222 1
Q ss_pred ceeeeecccccccchhHHHH
Q 023093 252 TVKKISGLTILDNNAVNLVS 271 (287)
Q Consensus 252 ~~~~i~G~~~l~N~~VN~ls 271 (287)
++.+.+|+..+.|..+|-+-
T Consensus 175 ~~~~~~~~~~~p~~~~~~~~ 194 (399)
T PRK11099 175 KVSAASPLTQKPNRARRRFR 194 (399)
T ss_pred ccccccccccCchhhHHHhH
Confidence 23334466666665566543
No 45
>PRK14400 membrane protein; Provisional
Probab=25.53 E-value=2.4e+02 Score=25.48 Aligned_cols=64 Identities=11% Similarity=0.010 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCChhhhHHHHHHHHHHHh-cChhHHHHHHHHHHhhhhhhhcchhhhhcccccc
Q 023093 16 SLIAIRSYRRKSLNFSGAVSGFIVMTAHIA-AGSRFGALLLVFFFTSSKLTKVGEERKRRVDADF 79 (287)
Q Consensus 16 ~~la~~a~~~ksLt~sGa~aa~~vG~~~~~-~g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~ 79 (287)
..........|..+.+..+++...-...+. .+.+.........+.--..-|+|++.||-+.-+|
T Consensus 134 ~i~~i~~~itr~vSL~Si~a~~~~~i~~~~~~~~~~~~~~~~~~~~~lii~rHr~NI~Rl~~g~E 198 (201)
T PRK14400 134 VGYAVAYGLTRISSVGSLTGTALCVAGGFATYGPRHPVSWAGLAIALLIFVRHRENIRRLVRGEE 198 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333444555778888877777666654332 2221011112222333456677777776555433
No 46
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=25.23 E-value=1.5e+02 Score=22.38 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=10.7
Q ss_pred HHHHhhhhhhhcchhhhh
Q 023093 56 VFFFTSSKLTKVGEERKR 73 (287)
Q Consensus 56 ~Ff~~sS~~TK~k~~~K~ 73 (287)
+||..=+.+|.+-.++|+
T Consensus 42 i~~~~lt~ltN~YFK~k~ 59 (68)
T PF04971_consen 42 IFFGLLTYLTNLYFKIKE 59 (68)
T ss_pred HHHHHHHHHhHhhhhhhH
Confidence 566666666666544443
No 47
>PRK14396 membrane protein; Provisional
Probab=24.56 E-value=2.9e+02 Score=24.73 Aligned_cols=62 Identities=10% Similarity=-0.047 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCChhhhHHHHHHHHHHHhcChhHHHHHHHHHHhhhhhhhcchhhhhccccc
Q 023093 16 SLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDAD 78 (287)
Q Consensus 16 ~~la~~a~~~ksLt~sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~ 78 (287)
..........|..+.+..+++...-...+..+.+.. .+....+.--.+-|.|.+.||-+.-+
T Consensus 124 ~~~~i~~~itr~vSl~Si~a~~~~~~~~~~~~~~~~-~~~~~~l~~lii~rHr~NI~Rl~~g~ 185 (190)
T PRK14396 124 ITWAVVFMIFRYSSLSSIISIISSCIYCAVTENFNS-SIFYIAMSIIILIKHRDNIIRMINGT 185 (190)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333444556677888877777666555443322111 12222233344567777666655433
No 48
>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]
Probab=24.41 E-value=25 Score=31.27 Aligned_cols=51 Identities=24% Similarity=0.182 Sum_probs=31.5
Q ss_pred HhhhhhhHHHhhhhhhh----------hcceecccceeecCCCCceeeeecccccccchhHHHHH
Q 023093 218 AGLCGSLIDSLLGATLQ----------FSGFCSVRNKVVGKPGPTVKKISGLTILDNNAVNLVSI 272 (287)
Q Consensus 218 ~G~~Gsl~DSlLGAtlQ----------~~~~~~~~~~v~~~~g~~~~~i~G~~~l~N~~VN~lst 272 (287)
.+=.=-.+||=||++.. .-|||..|..+|...-+=.-||.|. |++-||=++
T Consensus 47 ~rdykvdl~sKLgkt~vitk~tp~sq~~GyyCdVCdcvvKDSinflDHiNgK----kHqrnlgms 107 (193)
T KOG4727|consen 47 HRDYKVDLESKLGKTVVITKSTPRSQKGGYYCDVCDCVVKDSINFLDHINGK----KHQRNLGMS 107 (193)
T ss_pred hhhhhhHhHhhccceeEeccCCcccccCceeeeecceeehhhHHHHHHhccH----HHHHHHhhh
Confidence 33344568999999874 4699999988874332222344443 456665443
No 49
>PF04093 MreD: rod shape-determining protein MreD; InterPro: IPR007227 The MreD (murein formation D) protein is involved in bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore cannot always be identified on the basis of sequence similarity.; GO: 0008360 regulation of cell shape, 0016021 integral to membrane
Probab=24.38 E-value=2.6e+02 Score=23.09 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=32.2
Q ss_pred HHHHHHhcCCChhhhHHHHHHHHHH-HhcChhHHHHHHHHHHhhhhhhhcchhh
Q 023093 19 AIRSYRRKSLNFSGAVSGFIVMTAH-IAAGSRFGALLLVFFFTSSKLTKVGEER 71 (287)
Q Consensus 19 a~~a~~~ksLt~sGa~aa~~vG~~~-~~~g~~~~~~Ll~Ff~~sS~~TK~k~~~ 71 (287)
.+.+.+++ +..|...|+++|.+. ...|-..+.-.+.|-+.+-...|.+++.
T Consensus 42 ~~~a~~~~--~~~g~~~~~~~GLl~D~~~~~~lG~~al~~~l~~~~~~~~~~~~ 93 (160)
T PF04093_consen 42 VFWALYRG--NRAGLWLGFIIGLLQDIYYGGPLGIYALAYVLIGYLVGKLRKRF 93 (160)
T ss_pred HHHHHHcc--chhHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 578999999999986 4444444555566666666666665443
No 50
>PRK12488 acetate permease; Provisional
Probab=24.09 E-value=1.9e+02 Score=29.56 Aligned_cols=23 Identities=30% Similarity=0.183 Sum_probs=18.0
Q ss_pred HHHHhcCCChhhhHHHHHHHHHH
Q 023093 21 RSYRRKSLNFSGAVSGFIVMTAH 43 (287)
Q Consensus 21 ~a~~~ksLt~sGa~aa~~vG~~~ 43 (287)
.+..-|..|..|++++.++|.+.
T Consensus 449 lgl~wkr~t~~ga~ag~i~G~~~ 471 (549)
T PRK12488 449 LSMFWKGLTTRGAVAGSYAGLVS 471 (549)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHH
Confidence 44445569999999999999764
No 51
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.27 E-value=2.7e+02 Score=19.58 Aligned_cols=42 Identities=29% Similarity=0.571 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHhhhhhhHH
Q 023093 175 GLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLID 226 (287)
Q Consensus 175 G~~as~~G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~Gsl~D 226 (287)
|-..+.+-++++|+.+...+++ +...++.+..++-+.|..+|
T Consensus 9 ~~iiG~~~G~ila~l~l~~GF~----------~tl~i~~~~~iG~~iG~~~d 50 (51)
T PF10031_consen 9 GKIIGGLIGLILALLILTFGFW----------KTLFILLFAAIGYYIGKYLD 50 (51)
T ss_pred chHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhc
Confidence 3445556666777655544432 11222333345556676666
No 52
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=23.25 E-value=36 Score=31.87 Aligned_cols=15 Identities=47% Similarity=0.527 Sum_probs=11.9
Q ss_pred CcccCCCCCcccchh
Q 023093 160 FKPVRRGTNGGVTKA 174 (287)
Q Consensus 160 ~k~VppGTnGgVS~l 174 (287)
-|.||-||+|||-..
T Consensus 71 v~nvPCGTsGGVlIy 85 (322)
T KOG2962|consen 71 VKNVPCGTSGGVLIY 85 (322)
T ss_pred cccCCCCCCCcEEEE
Confidence 467899999998643
No 53
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=22.83 E-value=5.2e+02 Score=22.57 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=7.6
Q ss_pred HHHHHHHHHhc-CCChh
Q 023093 16 SLIAIRSYRRK-SLNFS 31 (287)
Q Consensus 16 ~~la~~a~~~k-sLt~s 31 (287)
.......+||+ ..|.+
T Consensus 48 ~~~~~~~~~~~~~i~~~ 64 (240)
T PF01925_consen 48 SLIAALRHRKHGNIDWK 64 (240)
T ss_pred HHHHHHHHHHccccchh
Confidence 33344445553 46654
No 54
>PRK14403 membrane protein; Provisional
Probab=22.34 E-value=3.1e+02 Score=24.66 Aligned_cols=69 Identities=9% Similarity=0.085 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhc-ChhHHHHHHHHHHhhhhhhhcchhhhhccccccc
Q 023093 10 IAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAA-GSRFGALLLVFFFTSSKLTKVGEERKRRVDADFK 80 (287)
Q Consensus 10 ~a~~~~~~la~~a~~~ksLt~sGa~aa~~vG~~~~~~-g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~~ 80 (287)
..++............|..+.+..+++...-...+.. +... ......+..-.+-|+|++.||-++-+|+
T Consensus 120 ~~li~~~i~~~~~~~tr~vSl~Si~a~~~~~~~~~~~~~~~~--~~~~~~~~~lvi~rHr~NI~Rl~~g~E~ 189 (196)
T PRK14403 120 TGLVFTLTWLVIVMLTKYASLGSLVALYVSALLGYLLKGYDT--GMLILILAVLSTLRHSENIQRLLNGTER 189 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3344444444556667888888777766655544332 2222 1222223444567788777776554443
No 55
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=22.23 E-value=6.5e+02 Score=23.65 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=26.4
Q ss_pred hhhhhhhhccCCC-CceeeeCCcccCCCCCcccchhHHHHHHHHHHHHHHHH
Q 023093 140 DTWSSELGVLSDE-QPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIGLTF 190 (287)
Q Consensus 140 DTwASEiG~Ls~~-~PrlItt~k~VppGTnGgVS~lG~~as~~G~~~ig~~~ 190 (287)
||-|+-+|.-.++ +| |+.|- =|+-|.++.+.-|+++..+|
T Consensus 169 Dt~AdtvGRKfG~~tp-------k~akn----KSlAGSIgaft~Gvf~c~vy 209 (269)
T KOG4453|consen 169 DTIADTVGRKFGSTTP-------KYAKN----KSLAGSIGAFTFGVFICIVY 209 (269)
T ss_pred hhHHHHHhhhccccCC-------CcCCC----ccccchHHHHHHHHHHHHHH
Confidence 9999999965442 23 22222 36778888877777776654
No 56
>PRK14398 membrane protein; Provisional
Probab=21.83 E-value=3.2e+02 Score=24.52 Aligned_cols=66 Identities=5% Similarity=-0.057 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhcChhHHHHHHHHHHhhhhhhhcchhhhhccccc
Q 023093 11 AVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDAD 78 (287)
Q Consensus 11 a~~~~~~la~~a~~~ksLt~sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~ 78 (287)
.++............|..+.+...++...-...+..+... .+...++..-.+-|.|++.||-+.-+
T Consensus 121 ~l~~~~~~~~~~~~tr~vSl~Si~a~~~~~~~~~~~~~~~--~~~~~~~~~lvi~rHr~NI~Rl~~g~ 186 (191)
T PRK14398 121 TLAFVFVWLIVFFAFRYSSLASLSATSAAVAWSFFFQRNL--FLTLLTVAILIFLKHYRNIVNLLQGR 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333333444556677888887776666555433322211 11222233445667777777655433
No 57
>COG0355 AtpC F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]
Probab=21.65 E-value=38 Score=28.61 Aligned_cols=21 Identities=48% Similarity=0.711 Sum_probs=16.5
Q ss_pred hhhhhhhhccCCCCceeeeCCc
Q 023093 140 DTWSSELGVLSDEQPRLITTFK 161 (287)
Q Consensus 140 DTwASEiG~Ls~~~PrlItt~k 161 (287)
=|-.-|+|+|.++.| +||++|
T Consensus 26 ~t~eGe~GILp~H~P-lit~Lk 46 (135)
T COG0355 26 PTTEGELGILPGHAP-LITALK 46 (135)
T ss_pred ecCCeeeecCCCCcc-ceeeec
Confidence 355679999999999 677766
No 58
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=21.54 E-value=1.3e+02 Score=25.93 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=24.5
Q ss_pred hhhhccccccccC-CCCChhhHhhcchHHHHHHHHH
Q 023093 70 ERKRRVDADFKEG-GQRNWIQVLSNSGIAAVLVVIV 104 (287)
Q Consensus 70 ~~K~~l~~~~~~~-g~R~~~QVlaNg~va~~~al~~ 104 (287)
|-++++++..++. ..+.|.++++++..+..++.++
T Consensus 86 ea~~~L~~I~~~~~~y~~~~~~l~~~l~~~~fa~lf 121 (193)
T PF06738_consen 86 EAIERLDEIDREPPRYPPWLVILAAGLASAAFALLF 121 (193)
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3445555444333 5778999999999998888764
No 59
>PRK14414 membrane protein; Provisional
Probab=20.79 E-value=3.2e+02 Score=24.97 Aligned_cols=64 Identities=14% Similarity=0.018 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhcChhHH---HHHHHHHHhhhhhhhcchhhhhcc
Q 023093 12 VLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFG---ALLLVFFFTSSKLTKVGEERKRRV 75 (287)
Q Consensus 12 ~~~~~~la~~a~~~ksLt~sGa~aa~~vG~~~~~~g~~~~---~~Ll~Ff~~sS~~TK~k~~~K~~l 75 (287)
++............|..+.+..+++...-...+...-+.. ..++...+..-..-|.|++.++-+
T Consensus 126 li~~~if~i~~~~tr~vSL~Si~a~~~~pi~~~~~~~~~~~~~~~~~~~~i~~lv~~rH~~NI~rl~ 192 (210)
T PRK14414 126 PIYIACFLILMAITRFPTLSYGISFISFILVAWLGQHDMGKVLFSLLVVMIPILMYIPRMKEIKNKA 192 (210)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333344445566788888888887777666544332222 233344555555666666666544
No 60
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=20.42 E-value=1.2e+02 Score=22.10 Aligned_cols=24 Identities=25% Similarity=0.193 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHhhhhhhhcchhhh
Q 023093 49 RFGALLLVFFFTSSKLTKVGEERK 72 (287)
Q Consensus 49 ~~~~~Ll~Ff~~sS~~TK~k~~~K 72 (287)
.++.++++.++-|=...-+|+++|
T Consensus 5 f~~ti~lvv~LYgY~yhLYrsek~ 28 (56)
T TIGR02736 5 FAFTLLLVIFLYAYIYHLYRSQKK 28 (56)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcc
Confidence 345666666777777777777765
No 61
>TIGR01528 NMN_trans_PnuC nicotinamide mononucleotide transporter PnuC. The PnuC protein of E. coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see TIGR01526). This model defines a region corresponding to most of the length of PnuC, found primarily in pathogens. The extreme N- and C-terminal regions are poorly conserved and not included in the alignment and model.
Probab=20.41 E-value=5.9e+02 Score=22.31 Aligned_cols=54 Identities=24% Similarity=0.261 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhcCC-ChhhhHHHHHHHHHHHhcChhHHHHHHHHHHhhhh
Q 023093 10 IAVLISSLIAIRSYRRKSL-NFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSK 63 (287)
Q Consensus 10 ~a~~~~~~la~~a~~~ksL-t~sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~ 63 (287)
++.+.+++-.+.+.|.|.. =+-|.++..+-+++-+-.+...-..+=.||+.-+.
T Consensus 7 ~a~i~g~~~v~l~~k~~~~~w~~Giis~~ly~~i~~~~~lYgd~~lq~~y~~~~~ 61 (189)
T TIGR01528 7 IAGLMGILCVVLASEGKVSNYIFGLISAVIYLYIAYQTGLYAEVLLQLFFVIANI 61 (189)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555543 35677777776666666676666777777777666
Done!