Query 023093
Match_columns 287
No_of_seqs 115 out of 434
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 16:14:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh4_A Sodium/glucose cotransp 78.7 7.4 0.00025 37.9 9.0 83 22-105 416-511 (530)
2 2xq2_A Sodium/glucose cotransp 59.7 61 0.0021 31.9 11.0 21 23-43 446-466 (593)
3 3l1l_A Arginine/agmatine antip 29.2 1.3E+02 0.0045 27.3 7.3 24 44-67 403-426 (445)
4 2l34_A TYRO protein tyrosine k 26.7 59 0.002 20.1 3.0 25 31-59 6-30 (33)
5 2k1k_A Ephrin type-A receptor 22.3 1.1E+02 0.0036 19.4 3.6 17 26-43 6-22 (38)
6 3cw1_L U1 small nuclear ribonu 11.7 20 0.00069 26.6 -2.1 26 235-260 2-29 (77)
7 1jb0_M Photosystem 1 reaction 10.7 3.1E+02 0.011 16.7 3.5 25 1-25 1-25 (31)
8 1kvd_A SMK toxin; halotolerant 10.0 1.4E+02 0.0046 20.5 1.7 33 163-195 15-47 (63)
9 2ks1_B Epidermal growth factor 9.8 1.5E+02 0.0051 19.5 1.9 13 29-41 8-20 (44)
10 1twf_L ABC10-alpha, DNA-direct 9.4 1.4E+02 0.0049 21.4 1.8 33 233-265 25-59 (70)
No 1
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=78.66 E-value=7.4 Score=37.95 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=45.2
Q ss_pred HHHhcCCChhhhHHHHHHHHHHHh----c--ChhH-------HHHHHHHHHhhhhhhhcchhhhhccccccccCCCCChh
Q 023093 22 SYRRKSLNFSGAVSGFIVMTAHIA----A--GSRF-------GALLLVFFFTSSKLTKVGEERKRRVDADFKEGGQRNWI 88 (287)
Q Consensus 22 a~~~ksLt~sGa~aa~~vG~~~~~----~--g~~~-------~~~Ll~Ff~~sS~~TK~k~~~K~~l~~~~~~~g~R~~~ 88 (287)
+..-|..|..|++++.++|.+... . .+++ +..-++.++.-|++||-+.+++++.|.+.++-..+.+.
T Consensus 416 gl~wkr~~~~gA~~g~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~vSl~t~~~~~~~~~~~~~~~~~~~~~~~ 495 (530)
T 3dh4_A 416 GLFWKKTTSKGAIIGVVASIPFALFLKFMPLSMPFMDQMLYTLLFTMVVIAFTSLSTSINDDDPKGISVTSSMFVTDRSF 495 (530)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCSSSSCTTCCCCCCSCCCCCTTH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccchhhccCcchH
Confidence 444556999999999999987531 1 1111 12222345557888887766655554443333334444
Q ss_pred hHhhcchHHHHHHHHHH
Q 023093 89 QVLSNSGIAAVLVVIVW 105 (287)
Q Consensus 89 QVlaNg~va~~~al~~~ 105 (287)
++.+-..+..+ +.+|.
T Consensus 496 ~~~~~~~~~~~-~~~y~ 511 (530)
T 3dh4_A 496 NIAAYGIMIVL-AVLYT 511 (530)
T ss_dssp HHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHH-HHHHH
Confidence 44444444443 33443
No 2
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=59.70 E-value=61 Score=31.87 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=17.0
Q ss_pred HHhcCCChhhhHHHHHHHHHH
Q 023093 23 YRRKSLNFSGAVSGFIVMTAH 43 (287)
Q Consensus 23 ~~~ksLt~sGa~aa~~vG~~~ 43 (287)
..-|..|..|+++|.++|.+.
T Consensus 446 lfwkr~~~~gA~~g~i~G~~~ 466 (593)
T 2xq2_A 446 LFWKKTTSKGAIIGVVASIPF 466 (593)
T ss_dssp HHCTTCCHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHH
Confidence 334558999999999999875
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=29.25 E-value=1.3e+02 Score=27.27 Aligned_cols=24 Identities=8% Similarity=0.180 Sum_probs=10.9
Q ss_pred HhcChhHHHHHHHHHHhhhhhhhc
Q 023093 44 IAAGSRFGALLLVFFFTSSKLTKV 67 (287)
Q Consensus 44 ~~~g~~~~~~Ll~Ff~~sS~~TK~ 67 (287)
+..++.-...-+.+.+.+-.+-.+
T Consensus 403 ~~~~~~~~~~~~~~~~~g~~~y~~ 426 (445)
T 3l1l_A 403 VGSGAKEVMWSFVTLMVITAMYAL 426 (445)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHH
Confidence 345655444344444545444333
No 4
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=26.72 E-value=59 Score=20.12 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHhcChhHHHHHHHHHH
Q 023093 31 SGAVSGFIVMTAHIAAGSRFGALLLVFFF 59 (287)
Q Consensus 31 sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~ 59 (287)
.|+++++++|-+.... .+.+++||+
T Consensus 6 ~gaIaGIVvgdi~~t~----~i~~~vy~~ 30 (33)
T 2l34_A 6 PGVLAGIVVGDLVLTV----LIALAVYFL 30 (33)
T ss_dssp THHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred cceEEeEeHHHHHHHH----HHHHHHhhe
Confidence 5889999999876433 244555554
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=22.28 E-value=1.1e+02 Score=19.45 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=13.1
Q ss_pred cCCChhhhHHHHHHHHHH
Q 023093 26 KSLNFSGAVSGFIVMTAH 43 (287)
Q Consensus 26 ksLt~sGa~aa~~vG~~~ 43 (287)
+.|+ .|+++++++|.+.
T Consensus 6 ~~ls-~GaIAGiVvG~v~ 22 (38)
T 2k1k_A 6 RGLT-GGEIVAVIFGLLL 22 (38)
T ss_dssp TTCC-HHHHHHHHHHHHH
T ss_pred CCCC-CCceeeeehHHHH
Confidence 3455 8999999999764
No 6
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=11.71 E-value=20 Score=26.58 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=17.6
Q ss_pred hcceecccceeecCCCC--ceeeeeccc
Q 023093 235 FSGFCSVRNKVVGKPGP--TVKKISGLT 260 (287)
Q Consensus 235 ~~~~~~~~~~v~~~~g~--~~~~i~G~~ 260 (287)
.+|||+-|++.+-++.+ +-.|..|+.
T Consensus 2 PkYyCdYCd~~lt~Ds~s~Rk~H~~G~k 29 (77)
T 3cw1_L 2 PKFYCDYCDTYLTHDSPSVRKTHCSGRK 29 (77)
T ss_pred CCcccccCCceecCCCHHHHHHHHccHH
Confidence 47999999988844433 345677764
No 7
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=10.69 E-value=3.1e+02 Score=16.68 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=19.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHh
Q 023093 1 METFLNQTLIAVLISSLIAIRSYRR 25 (287)
Q Consensus 1 ~~~~~~~~~~a~~~~~~la~~a~~~ 25 (287)
|+-+-.++.+++++++.-++.+.|.
T Consensus 1 m~Isd~Qi~iAL~~Al~~~iLA~rL 25 (31)
T 1jb0_M 1 MALTDTQVYVALVIALLPAVLAFRL 25 (31)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567888999988888888875
No 8
>1kvd_A SMK toxin; halotolerant yeast; 1.80A {Pichia farinosa} SCOP: d.70.1.2 PDB: 1kve_A
Probab=9.97 E-value=1.4e+02 Score=20.51 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=26.0
Q ss_pred cCCCCCcccchhHHHHHHHHHHHHHHHHHHHhh
Q 023093 163 VRRGTNGGVTKAGLLAAVAAGSVIGLTFVLFGF 195 (287)
Q Consensus 163 VppGTnGgVS~lG~~as~~G~~~ig~~~~~~~~ 195 (287)
.-.|-+|+-++-|+..++.|...-++...+-++
T Consensus 15 aiagcsgaatfgglaggivgciaagilailqgf 47 (63)
T 1kvd_A 15 AIAGCSGAATFGGLAGGIVGCIAAGILAILQGF 47 (63)
T ss_dssp CBCCCSSCCCCTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHhCCccchhcccccchHHHHHHHHHHHHHhcc
Confidence 456999999999999999998887776554443
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=9.79 E-value=1.5e+02 Score=19.46 Aligned_cols=13 Identities=8% Similarity=-0.141 Sum_probs=6.7
Q ss_pred ChhhhHHHHHHHH
Q 023093 29 NFSGAVSGFIVMT 41 (287)
Q Consensus 29 t~sGa~aa~~vG~ 41 (287)
+..+++|+-+||-
T Consensus 8 s~~~~IA~gVVgG 20 (44)
T 2ks1_B 8 PKIPSIATGMVGA 20 (44)
T ss_dssp SCSSSSTHHHHHH
T ss_pred CCcceEEeehhHH
Confidence 3445566555553
No 10
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=9.39 E-value=1.4e+02 Score=21.36 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=21.7
Q ss_pred hhhcceecccceeecCC-CCcee-eeecccccccc
Q 023093 233 LQFSGFCSVRNKVVGKP-GPTVK-KISGLTILDNN 265 (287)
Q Consensus 233 lQ~~~~~~~~~~v~~~~-g~~~~-~i~G~~~l~N~ 265 (287)
.+..|.|.+|+..++.. ++.++ ..+|.++|-..
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~CG~RILyK~ 59 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKA 59 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSSCCCCCBCC
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCCCceEeEec
Confidence 57889999999997643 22222 25777666543
Done!