Query 023093
Match_columns 287
No_of_seqs 115 out of 434
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 16:15:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023093.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023093hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftb2 f.17.2.1 (B:27-117) Cy 22.2 14 0.00099 26.0 1.1 43 28-70 4-46 (91)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 10.7 99 0.0072 17.0 2.5 21 1-21 1-21 (30)
3 d1dfxa2 g.41.5.2 (A:1-36) Desu 9.1 77 0.0056 18.6 1.7 12 236-247 6-17 (36)
4 d1bboa1 g.37.1.1 (A:1-28) Enha 8.9 38 0.0028 18.8 0.3 14 236-249 1-14 (28)
5 d1vzia2 g.41.5.2 (A:1-37) Desu 8.5 51 0.0037 19.5 0.7 12 236-247 6-17 (37)
6 d1dxga_ g.41.5.2 (A:) Desulfor 7.9 56 0.0041 19.2 0.7 12 236-247 6-17 (36)
7 d1iz6a1 b.34.5.2 (A:2-70) Euka 7.8 53 0.0039 21.5 0.7 22 149-170 18-39 (69)
8 d1twfl_ g.41.9.2 (L:) RBP12 su 7.0 1E+02 0.0073 19.0 1.7 27 236-262 4-32 (46)
9 d1ciia1 f.1.1.1 (A:451-624) Co 6.8 92 0.0067 24.4 1.8 23 129-151 65-87 (174)
10 d1bkba1 b.34.5.2 (A:4-74) Euka 6.7 60 0.0044 21.5 0.5 23 148-170 20-42 (71)
No 1
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=22.16 E-value=14 Score=25.97 Aligned_cols=43 Identities=12% Similarity=-0.036 Sum_probs=19.7
Q ss_pred CChhhhHHHHHHHHHHHhcChhHHHHHHHHHHhhhhhhhcchh
Q 023093 28 LNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEE 70 (287)
Q Consensus 28 Lt~sGa~aa~~vG~~~~~~g~~~~~~Ll~Ff~~sS~~TK~k~~ 70 (287)
||+.|=.|--.--...........+.+.++.+.--.+-|||++
T Consensus 4 ldP~gp~a~~i~~L~~~~~~i~~iv~v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 4 LDPKGQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAWKYRAS 46 (91)
T ss_dssp SSCCSCCHHHHHHHHHHHHHHTTTTTTHHHHHHHTTTTTTTTS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeecc
Confidence 6777766655444332222222223333444444445566544
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.66 E-value=99 Score=16.97 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=14.5
Q ss_pred CcchhHHHHHHHHHHHHHHHH
Q 023093 1 METFLNQTLIAVLISSLIAIR 21 (287)
Q Consensus 1 ~~~~~~~~~~a~~~~~~la~~ 21 (287)
||.+.+-++++.++++++-..
T Consensus 1 me~i~yv~ifac~i~lfffai 21 (30)
T d2axtt1 1 METITYVFIFACIIALFFFAI 21 (30)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeehHHHHHHHHHHHHHHH
Confidence 788777777777776655433
No 3
>d1dfxa2 g.41.5.2 (A:1-36) Desulfoferrodoxin N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=9.06 E-value=77 Score=18.60 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=10.7
Q ss_pred cceecccceeec
Q 023093 236 SGFCSVRNKVVG 247 (287)
Q Consensus 236 ~~~~~~~~~v~~ 247 (287)
.|+|+.|+.+||
T Consensus 6 vYkC~~CGNiVe 17 (36)
T d1dfxa2 6 VYKCTHCGNIVE 17 (36)
T ss_dssp EEECTTTCCEEE
T ss_pred EEEecccCcEEE
Confidence 599999999987
No 4
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.94 E-value=38 Score=18.83 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=10.9
Q ss_pred cceecccceeecCC
Q 023093 236 SGFCSVRNKVVGKP 249 (287)
Q Consensus 236 ~~~~~~~~~v~~~~ 249 (287)
+|.|+.|+..+.+|
T Consensus 1 kYvC~~Cg~~C~KP 14 (28)
T d1bboa1 1 KYICEECGIRAKKP 14 (28)
T ss_dssp CCBCTTTCCBCSSH
T ss_pred CccccccCcccCCH
Confidence 47899988877665
No 5
>d1vzia2 g.41.5.2 (A:1-37) Desulfoferrodoxin N-terminal domain {Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]}
Probab=8.47 E-value=51 Score=19.54 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=10.5
Q ss_pred cceecccceeec
Q 023093 236 SGFCSVRNKVVG 247 (287)
Q Consensus 236 ~~~~~~~~~v~~ 247 (287)
.|+|+.|+.+||
T Consensus 6 vYkC~~CGNiVe 17 (37)
T d1vzia2 6 VYKCEVCGNIVE 17 (37)
T ss_dssp EEECTTTCCEEE
T ss_pred EEEecccCcEEE
Confidence 599999999986
No 6
>d1dxga_ g.41.5.2 (A:) Desulforedoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=7.90 E-value=56 Score=19.23 Aligned_cols=12 Identities=25% Similarity=0.296 Sum_probs=10.5
Q ss_pred cceecccceeec
Q 023093 236 SGFCSVRNKVVG 247 (287)
Q Consensus 236 ~~~~~~~~~v~~ 247 (287)
.|.|+.|+.+|+
T Consensus 6 vYkC~~CGNiVe 17 (36)
T d1dxga_ 6 VYKCELCGQVVK 17 (36)
T ss_dssp EEECTTTCCEEE
T ss_pred EEEeccCCcEEE
Confidence 589999999886
No 7
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=7.81 E-value=53 Score=21.55 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=18.9
Q ss_pred cCCCCceeeeCCcccCCCCCcc
Q 023093 149 LSDEQPRLITTFKPVRRGTNGG 170 (287)
Q Consensus 149 Ls~~~PrlItt~k~VppGTnGg 170 (287)
..+.+|..|+....+.||.+|+
T Consensus 18 ~~~g~p~~V~e~~~~kpGk~G~ 39 (69)
T d1iz6a1 18 IIDDEPCRIVNITVSSPGKHGS 39 (69)
T ss_dssp EETTEEEEEEEEEECCCCTTSC
T ss_pred EECCEEEEEEEEEEEcCCCcCc
Confidence 4578999999999999999875
No 8
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.04 E-value=1e+02 Score=19.02 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=15.8
Q ss_pred cceecccceeec-CCCCcee-eeeccccc
Q 023093 236 SGFCSVRNKVVG-KPGPTVK-KISGLTIL 262 (287)
Q Consensus 236 ~~~~~~~~~v~~-~~g~~~~-~i~G~~~l 262 (287)
+|.|-+|+..++ ++++.++ +-+|.++|
T Consensus 4 ~YiCgeCg~~~~l~~~d~irCreCG~RIl 32 (46)
T d1twfl_ 4 KYICAECSSKLSLSRTDAVRCKDCGHRIL 32 (46)
T ss_dssp CEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EEEcccCCCceEeCCCCcEEeccCCcEEE
Confidence 478888877665 3444443 34565555
No 9
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]}
Probab=6.84 E-value=92 Score=24.40 Aligned_cols=23 Identities=22% Similarity=0.101 Sum_probs=17.6
Q ss_pred HHHHHHHhhhchhhhhhhhccCC
Q 023093 129 GILGHYCCCNGDTWSSELGVLSD 151 (287)
Q Consensus 129 a~~~~~A~a~aDTwASEiG~Ls~ 151 (287)
+.+-++-...+|.+|.-++.+||
T Consensus 65 AI~nAlk~~d~~~ma~nl~k~sK 87 (174)
T d1ciia1 65 AIAAALESVKLSDISSNLNRFSR 87 (174)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHHHH
Confidence 34557888889999988888764
No 10
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=6.66 E-value=60 Score=21.45 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=19.4
Q ss_pred ccCCCCceeeeCCcccCCCCCcc
Q 023093 148 VLSDEQPRLITTFKPVRRGTNGG 170 (287)
Q Consensus 148 ~Ls~~~PrlItt~k~VppGTnGg 170 (287)
+..+.+|..|+....+.||.+|+
T Consensus 20 i~~~g~p~~V~~~~~~kpgk~G~ 42 (71)
T d1bkba1 20 VVIDGEPCRVVEIEKSKTGKHGS 42 (71)
T ss_dssp EEETTEEEEEEEEEEECCSTTSC
T ss_pred EEECCEEEEEEEEEEECCCCCCc
Confidence 45688999999999999999774
Done!