BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023096
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4FP17|LEU3_PELUB 3-isopropylmalate dehydrogenase OS=Pelagibacter ubique (strain
HTCC1062) GN=leuB PE=3 SV=1
Length = 368
Score = 34.7 bits (78), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 210 KRPTIFLKEGDLIPPDVDPDT---VRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRI 266
K+ I L GD I P+V + + W+ +N +IDEDLA Y K G P
Sbjct: 5 KKRKILLLPGDGIGPEVIQEVKKVILWLNSNKSLDF---EIDEDLAGGCSYDKHGTPITD 61
Query: 267 RAEHEALQKKLEALQNVS 284
++AL+ + L V
Sbjct: 62 EVFYKALESEFVMLGAVG 79
>sp|Q9K6Q8|LYAT_BACHD Transcriptional regulator LytR OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=lytR PE=3 SV=1
Length = 304
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 103 RSSFAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRGQLRSDRRGISRPLKYEDP 162
++ AIGL L T + I+ + S N G + + + RG +SD+R ++ + +DP
Sbjct: 3 KALIAIGLILGTITVAIIGYGIYLYSSIQNTAGEMHEPLDRGD-KSDKRDVAFDISAQDP 61
Query: 163 FNNPLVKVGKSNSTMEMCGKVYRLAPITLTKEQQTI 198
F+ + V T G+ L +T+ ++++I
Sbjct: 62 FSILIAGVDSREDT--HAGRSDTLIVLTVNPKEESI 95
>sp|Q96QZ7|MAGI1_HUMAN Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1 OS=Homo sapiens GN=MAGI1 PE=1 SV=3
Length = 1491
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 174 NSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQ-----WKRPTIFLKEGDLIPPDVDP 228
+ E CGK+ R+ L +T + SRA + +R +FLK GD P+ DP
Sbjct: 1184 DGPAERCGKM-RIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGDGSVPEYDP 1242
Query: 229 DTVRWIPANHP 239
+ R PA P
Sbjct: 1243 SSDRHGPATGP 1253
>sp|A8LIT9|NUOD_DINSH NADH-quinone oxidoreductase subunit D OS=Dinoroseobacter shibae
(strain DFL 12) GN=nuoD PE=3 SV=1
Length = 404
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 222 IPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQ 274
+PPD+ D W +H F + +DID L +N +++++ + E E L+
Sbjct: 176 LPPDLLDDIEAW---SHEFPSVMDDIDGLLTENRIFKQRNCDIGVVTEEEILE 225
>sp|Q12466|TCB1_YEAST Tricalbin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TCB1 PE=1 SV=1
Length = 1186
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 104 SSFAIG---LSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRR 143
+SFA+G S+ +AF VIV+ + + R S GS+ +LV++
Sbjct: 120 ASFALGHYKFSMGSAFFVIVITSLLYRTSAKKYRGSIRELVQK 162
>sp|Q6MI59|SYD_BDEBA Aspartate--tRNA ligase OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=aspS PE=3 SV=1
Length = 642
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 228 PDTVRWIPANHPFATTANDIDEDLAQNN 255
PD RW+ +HPF + ++ +DL NN
Sbjct: 480 PDEKRWVARHHPFTSPKDEFAQDLVNNN 507
>sp|O48722|HMOX2_ARATH Probable inactive heme oxygenase 2, chloroplastic OS=Arabidopsis
thaliana GN=HO2 PE=1 SV=2
Length = 299
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 2 ASIWTLQFHSLYFPHRVSSTVAKLRTEFTLSQGR-LSLNRWSTNRKFQLKAVRD 54
A ++ F+S+YF H V + L +G+ L NRW + + LK VR+
Sbjct: 209 APLFLSHFYSIYFSHIAGGQVLVRQVSEKLLEGKELEFNRWEGDAQDLLKGVRE 262
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,203,825
Number of Sequences: 539616
Number of extensions: 3830781
Number of successful extensions: 9310
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 9305
Number of HSP's gapped (non-prelim): 12
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)