Query 023096
Match_columns 287
No_of_seqs 14 out of 16
Neff 1.7
Searched_HMMs 29240
Date Mon Mar 25 16:18:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dgw_Y Canavalin; duplicated s 69.3 1.5 5E-05 33.7 1.0 17 230-246 14-30 (93)
2 3rdy_A BWI-1=protease inhibito 57.3 6.4 0.00022 29.7 2.5 20 213-232 44-63 (79)
3 1mit_A RCMTI-V, trypsin inhibi 53.6 8.3 0.00028 27.6 2.5 46 174-232 8-53 (69)
4 1cq4_A Protein (serine protein 50.8 6.2 0.00021 26.8 1.4 18 213-230 29-46 (47)
5 1vbw_A Trypsin inhibitor BGIT; 49.7 10 0.00036 27.1 2.5 47 174-233 7-53 (68)
6 2ci2_I Chymotrypsin inhibitor 43.5 15 0.0005 27.4 2.6 48 173-233 21-68 (83)
7 1dwm_A LUTI, linum usitatissin 38.8 20 0.00069 25.5 2.6 21 213-233 35-55 (70)
8 2okm_A Collagen adhesin; colla 38.1 9.2 0.00032 32.2 0.8 21 211-234 3-23 (147)
9 1to2_I Chymotrypsin inhibitor 37.5 10 0.00035 26.8 0.8 22 212-233 28-49 (64)
10 1cse_I Eglin C; complex(serine 37.2 14 0.00049 26.5 1.6 21 213-233 34-54 (70)
11 3s8f_B Cytochrome C oxidase su 32.2 1.3E+02 0.0044 24.7 6.8 29 160-188 61-92 (168)
12 2zd1_B P51 RT; P51/P66, hetero 27.4 35 0.0012 30.6 2.8 37 137-181 38-75 (428)
13 2xze_Q Charged multivesicular 27.2 32 0.0011 23.5 1.9 14 269-282 27-40 (40)
14 2xyy_A Coat protein, P22; viru 25.3 22 0.00077 34.1 1.2 41 229-270 45-93 (430)
15 2ks1_B Epidermal growth factor 22.8 87 0.003 21.3 3.5 28 105-132 12-41 (44)
16 3p0s_A Capsid protein VP; icos 22.7 36 0.0012 32.9 2.0 57 142-198 393-464 (494)
17 3u97_A Ribonuclease toxin BRNT 22.1 22 0.00077 28.3 0.4 46 218-265 7-55 (114)
18 3o2t_A Symplekin; heat repeat, 21.3 35 0.0012 31.5 1.6 12 230-241 203-214 (386)
19 1mu2_A HIV-2 RT; HIV-2 reverse 20.1 33 0.0011 31.5 1.2 37 137-181 38-75 (555)
20 2k9y_A Ephrin type-A receptor 20.0 99 0.0034 19.4 3.1 13 106-118 15-27 (41)
No 1
>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y
Probab=69.30 E-value=1.5 Score=33.71 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=14.1
Q ss_pred ceeeecCCCCccccccc
Q 023096 230 TVRWIPANHPFATTAND 246 (287)
Q Consensus 230 tVRWIPaNHPFAtta~~ 246 (287)
.|=|||+||||+.-|+.
T Consensus 14 ~v~vVPq~~~v~~~A~~ 30 (93)
T 1dgw_Y 14 DIIVIPSSFPVALKAAS 30 (93)
T ss_dssp CEEEECTTCCEEEEESS
T ss_pred cEEEECCCCceeEEecC
Confidence 47799999999977763
No 2
>3rdy_A BWI-1=protease inhibitor/trypsin inhibitor; serine protease inhibitor, potato inhibitor I, trypsin inhib trypsin, hydrolase inhibitor; 1.84A {Fagopyrum esculentum} SCOP: d.40.1.0 PDB: 3rdz_C
Probab=57.34 E-value=6.4 Score=29.66 Aligned_cols=20 Identities=40% Similarity=0.614 Sum_probs=18.6
Q ss_pred eEeeccCCCCCCCCCCCcee
Q 023096 213 TIFLKEGDLIPPDVDPDTVR 232 (287)
Q Consensus 213 tvFLkEGdsvPpdVDPdtVR 232 (287)
+++|.+|+.++.|.+||-||
T Consensus 44 v~Vl~~Gs~VT~Dfr~~RVr 63 (79)
T 3rdy_A 44 AIVLPEGSAVPRDLRCDRVW 63 (79)
T ss_dssp EEEEETTCCCCSCCCSSEEE
T ss_pred eEEeCCCCccCCccCCCEEE
Confidence 57899999999999999998
No 3
>1mit_A RCMTI-V, trypsin inhibitor V; serine protease inhibitor (RCMTI-V); NMR {Cucurbita maxima} SCOP: d.40.1.1 PDB: 1tin_A
Probab=53.60 E-value=8.3 Score=27.65 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=30.6
Q ss_pred CccceecceeeeeecceecHHHHHHHHhhhcccccccCceEeeccCCCCCCCCCCCcee
Q 023096 174 NSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVR 232 (287)
Q Consensus 174 ~StveM~GK~yRLaPvtLT~Eqq~iHQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdtVR 232 (287)
+|--|+-|+-.. +....|.+.|-. + -..+|.+|++++.|.+||-||
T Consensus 8 ~sWpELVG~~~~-------~A~~~I~~d~p~-v-----~v~vl~~g~~vT~Dfr~~RV~ 53 (69)
T 1mit_A 8 SSWPHLVGVGGS-------VAKAIIERQNPN-V-----KAVILEEGTPVTKDFRCNRVR 53 (69)
T ss_dssp SCCCCCTTSHHH-------HHHHHHHHHCTT-S-----EEEEEETTCCCCSSCCTTEEE
T ss_pred CcCHHHcCccHH-------HHHHHHHHHCCC-C-----eEEEecCCCccCCCcCCCEEE
Confidence 455577776432 333344443321 1 368999999999999999987
No 4
>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1
Probab=50.81 E-value=6.2 Score=26.77 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=9.1
Q ss_pred eEeeccCCCCCCCCCCCc
Q 023096 213 TIFLKEGDLIPPDVDPDT 230 (287)
Q Consensus 213 tvFLkEGdsvPpdVDPdt 230 (287)
.++|.+|++++.|.++|-
T Consensus 29 v~vl~~gs~vT~Df~~~R 46 (47)
T 1cq4_A 29 IIVLPVGTIVTMGQQQQG 46 (47)
T ss_dssp EEEEETTCCC--------
T ss_pred EEEeCCCCCcCcccCCCC
Confidence 579999999999999874
No 5
>1vbw_A Trypsin inhibitor BGIT; BGTI, protein binding; HET: TLA; 0.93A {Momordica charantia}
Probab=49.73 E-value=10 Score=27.05 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=31.6
Q ss_pred CccceecceeeeeecceecHHHHHHHHhhhcccccccCceEeeccCCCCCCCCCCCceee
Q 023096 174 NSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVRW 233 (287)
Q Consensus 174 ~StveM~GK~yRLaPvtLT~Eqq~iHQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdtVRW 233 (287)
+|--|+-|+-.. +....|.+.|-. + -..+|.+|++++.|.+||-||=
T Consensus 7 ~sWpELVG~~~~-------~A~~~I~~d~p~-~-----~v~vl~~g~~vT~Df~~~RV~v 53 (68)
T 1vbw_A 7 SSWPQLVGSTGA-------AAKAVIERENPR-V-----RAVIIKVGSGATKDFRCDRVRV 53 (68)
T ss_dssp CBCGGGTTSBHH-------HHHHHHHHHCTT-C-----EEEEEETTSCCCCSCCTTEEEE
T ss_pred CcCHHHCCcCHH-------HHHHHHHHHCCC-C-----eEEEecCCCccCCCcCCCEEEE
Confidence 455577776433 333444444322 1 4689999999999999999983
No 6
>2ci2_I Chymotrypsin inhibitor 2; proteinase inhibitor (chymotrypsin); 2.00A {Hordeum vulgare} SCOP: d.40.1.1 PDB: 2sni_I
Probab=43.51 E-value=15 Score=27.40 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=31.8
Q ss_pred CCccceecceeeeeecceecHHHHHHHHhhhcccccccCceEeeccCCCCCCCCCCCceee
Q 023096 173 SNSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVRW 233 (287)
Q Consensus 173 ~~StveM~GK~yRLaPvtLT~Eqq~iHQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdtVRW 233 (287)
.+|--|+-|+-... ....|.+.|-. --..+|.+|++++.|.+||-||=
T Consensus 21 K~sWPELVG~~~~~-------A~~~I~~d~p~------v~vrVl~~G~~VT~Dfr~dRV~V 68 (83)
T 2ci2_I 21 KTEWPELVGKSVEE-------AKKVILQDKPE------AQIIVLPVGTIVTMEYRIDRVRL 68 (83)
T ss_dssp CCBCGGGTTSBHHH-------HHHHHHHHCTT------CEEEEEETTCCCCSCCCTTEEEE
T ss_pred hhhhHHHcCCcHHH-------HHHHHHhhCCC------CeEEEecCCCccCCCcCCCEEEE
Confidence 34555777765433 33444443322 14689999999999999999983
No 7
>1dwm_A LUTI, linum usitatissinum trypsin inhibitor; serine proteinase inhibitor; NMR {Linum usitatissimum} SCOP: d.40.1.1
Probab=38.76 E-value=20 Score=25.47 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=19.2
Q ss_pred eEeeccCCCCCCCCCCCceee
Q 023096 213 TIFLKEGDLIPPDVDPDTVRW 233 (287)
Q Consensus 213 tvFLkEGdsvPpdVDPdtVRW 233 (287)
..+|.+|+.++.|.+||-|+=
T Consensus 35 vrvl~pg~~vT~Dfr~~RV~v 55 (70)
T 1dwm_A 35 AIVLKEGSAMTKDFRCDRVWV 55 (70)
T ss_dssp EEEEETTCCCCCSCCTTEEEE
T ss_pred EEEecCCCccCCccCCCeEEE
Confidence 678999999999999999873
No 8
>2okm_A Collagen adhesin; collagen-binding, cell adhesion; 1.65A {Enterococcus faecalis}
Probab=38.06 E-value=9.2 Score=32.17 Aligned_cols=21 Identities=38% Similarity=0.754 Sum_probs=17.5
Q ss_pred CceEeeccCCCCCCCCCCCceeee
Q 023096 211 RPTIFLKEGDLIPPDVDPDTVRWI 234 (287)
Q Consensus 211 RPtvFLkEGdsvPpdVDPdtVRWI 234 (287)
.|..|.|-||-.| |++.|||.
T Consensus 3 ~~~FyyKtGdm~~---d~~~VRWf 23 (147)
T 2okm_A 3 DYPFFYKVGDLAG---ESNQVRWF 23 (147)
T ss_dssp CCCSEEEEEECCS---STTEEEEE
T ss_pred CcccEEeccCCCC---CCCeEEEE
Confidence 4668999999974 78999995
No 9
>1to2_I Chymotrypsin inhibitor 2; serine protease, hydrolase; HET: CIT 15P; 1.30A {Hordeum vulgare subsp} SCOP: d.40.1.1 PDB: 1tm3_I* 1tm5_I* 1tm1_I* 1tm7_I* 1tm4_I* 1y4a_I* 1y4d_I 1tmg_I* 1lw6_I 1y3b_I* 1y1k_I* 1y34_I* 1y48_I* 1y3d_I* 1y3c_I* 1y33_I* 1to1_I* 1y3f_I* 3ci2_A 1coa_I ...
Probab=37.46 E-value=10 Score=26.84 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.5
Q ss_pred ceEeeccCCCCCCCCCCCceee
Q 023096 212 PTIFLKEGDLIPPDVDPDTVRW 233 (287)
Q Consensus 212 PtvFLkEGdsvPpdVDPdtVRW 233 (287)
-..+|.+|++++.|.+||-||=
T Consensus 28 ~v~vl~~g~~vT~Df~~~RV~v 49 (64)
T 1to2_I 28 QIIVLPVGTIVTKEYRIDRVRL 49 (64)
T ss_dssp EEEEEETTCEEECBCCTTEEEE
T ss_pred eEEEecCCCccCCCcCCCEEEE
Confidence 3579999999999999999983
No 10
>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B
Probab=37.21 E-value=14 Score=26.54 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.2
Q ss_pred eEeeccCCCCCCCCCCCceee
Q 023096 213 TIFLKEGDLIPPDVDPDTVRW 233 (287)
Q Consensus 213 tvFLkEGdsvPpdVDPdtVRW 233 (287)
..+|.+|++++.|.+||-||=
T Consensus 34 v~vl~~g~~vT~Df~~~RV~V 54 (70)
T 1cse_I 34 VYFLPEGSPVTLDLRYNRVRV 54 (70)
T ss_dssp EEEEETTCCEECCCCTTEEEE
T ss_pred EEEecCCCccCCccCCCeEEE
Confidence 589999999999999999983
No 11
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=32.16 E-value=1.3e+02 Score=24.71 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=18.6
Q ss_pred CCCCCCcc--ee-ecCCCccceecceeeeeec
Q 023096 160 EDPFNNPL--VK-VGKSNSTMEMCGKVYRLAP 188 (287)
Q Consensus 160 eDPFNNPl--VK-v~k~~StveM~GK~yRLaP 188 (287)
+-||.+|= ++ +..+.-.|+|-+.-|+..|
T Consensus 61 ~~~f~~pg~a~~~~~~~~v~V~m~a~~~~f~P 92 (168)
T 3s8f_B 61 EGPWADPAQAVVQTGPNQYTVYVLAFAFGYQP 92 (168)
T ss_dssp SSTTSCGGGCEEEEETTEEEEEEEEETTEEES
T ss_pred ccccCCCCcccccCCCCeEEEEEEEEeceEec
Confidence 45999997 53 4556666777665555443
No 12
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=27.41 E-value=35 Score=30.64 Aligned_cols=37 Identities=22% Similarity=0.481 Sum_probs=27.5
Q ss_pred hHHHHHhcccccCCcCCCCCCccCCCCCCcceeecCCCcc-ceecc
Q 023096 137 VEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNST-MEMCG 181 (287)
Q Consensus 137 VaDLvRRGQLrSdrRGis~plkYeDPFNNPlVKv~k~~St-veM~G 181 (287)
|.+|++.|-++- ...+.|+++|.+-|.|.+++ .+||-
T Consensus 38 i~~ll~~G~I~~--------v~s~s~~~sPv~~V~Kk~g~k~R~~v 75 (428)
T 2zd1_B 38 CTEMEKEGKISK--------IGPENPYNTPVFAIKKKDSTKWRKLV 75 (428)
T ss_dssp HHHHHHTTSEEE--------CCTTCCCBBCEEEECCTTCSSCEEEE
T ss_pred HHHHHHCCCceE--------CCCCCCccCceeeccCCCCCceEEEE
Confidence 567787777762 22346999999999998874 88884
No 13
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=27.22 E-value=32 Score=23.50 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHhhc
Q 023096 269 EHEALQKKLEALQN 282 (287)
Q Consensus 269 EHEALq~klEa~~n 282 (287)
+.+++|.||.||.+
T Consensus 27 di~~MqsRLaALRS 40 (40)
T 2xze_Q 27 ALEAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC
Confidence 46899999999864
No 14
>2xyy_A Coat protein, P22; virus, icosahedral reconstruction; 3.80A {Enterobacteria phage P22} PDB: 2xyz_A 3iyh_A 3iyi_A
Probab=25.30 E-value=22 Score=34.10 Aligned_cols=41 Identities=22% Similarity=0.397 Sum_probs=34.5
Q ss_pred CceeeecCC---C-----CcccccccccHHHhhcccccccCCccchhhhH
Q 023096 229 DTVRWIPAN---H-----PFATTANDIDEDLAQNNVYQKQGVPFRIRAEH 270 (287)
Q Consensus 229 dtVRWIPaN---H-----PFAtta~~iDEdlAq~NVyQk~GVP~RikAEH 270 (287)
||| |||+- + ||+..+++++|...--++=+-+-|||++.||-
T Consensus 45 dtv-~~Pv~~~~~~~dg~~~t~~~~~~~e~~V~~~~~~~~~v~~~~~ake 93 (430)
T 2xyy_A 45 NTI-WMPVEQESPTQEGWDLTDKATGLLELNVAVNMGEPDNDFFQLRADD 93 (430)
T ss_pred CeE-EeccCccccccccCcccCCCCccccceeeEEecCcccccEEechhH
Confidence 566 88863 3 89999999999888888888889999999984
No 15
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=22.79 E-value=87 Score=21.34 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=14.1
Q ss_pred chhHHHHHHHHHHHH--HHHHhhhhccccC
Q 023096 105 SFAIGLSLSTAFLVI--VVRAFIVRRSRYN 132 (287)
Q Consensus 105 nf~~~~cv~~a~l~~--~~R~~v~r~~~~~ 132 (287)
.+++|+..+++++++ ++-.|..|+++..
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 377777555554333 3333445554443
No 16
>3p0s_A Capsid protein VP; icosahedral virus capsid, virus-like particle, capsid protei barrel; 3.10A {Bombyx mori densovirus 1}
Probab=22.67 E-value=36 Score=32.85 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=29.3
Q ss_pred HhcccccCCcCCCC--------------CCccCCCCCCcceeecCC-CccceecceeeeeecceecHHHHHH
Q 023096 142 RRGQLRSDRRGISR--------------PLKYEDPFNNPLVKVGKS-NSTMEMCGKVYRLAPITLTKEQQTI 198 (287)
Q Consensus 142 RRGQLrSdrRGis~--------------plkYeDPFNNPlVKv~k~-~StveM~GK~yRLaPvtLT~Eqq~i 198 (287)
|---|.|-|++|++ -.+|+|||+-||+....- +---.--|-.-|++|=+-.+|+++.
T Consensus 393 ~l~glqstrew~~rtdtiPpq~ftsqy~qfr~~~~~~~pl~~~~~~~~~pt~rpgM~s~~~~~r~~~~~~~~ 464 (494)
T 3p0s_A 393 RLTGLQSTREWVARTDRIPPQYFTSQYTQFRYPNINETPLLRSLGTFKLPTKRPGMDSRIAAGRAAETTQDE 464 (494)
T ss_dssp EEEEEECCSSCCCSSSSCCCCCSSCCCEEEECSSTTSCCCEECTTCCEETTTEECEECCSBC----------
T ss_pred EEeeccccccceeecCccCchhhcccccccccCCcccCcccccccccccCCCCccccccCCCCccchhhhHH
Confidence 34456677888887 257999999999953210 0001123556688998887777653
No 17
>3u97_A Ribonuclease toxin BRNT; RNAse SA/RELE small ribonuclease fold, bRNA, H; HET: MSE; 1.10A {Brucella abortus}
Probab=22.13 E-value=22 Score=28.27 Aligned_cols=46 Identities=28% Similarity=0.439 Sum_probs=18.6
Q ss_pred cCCCCCC---CCCCCceeeecCCCCcccccccccHHHhhcccccccCCccc
Q 023096 218 EGDLIPP---DVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFR 265 (287)
Q Consensus 218 EGdsvPp---dVDPdtVRWIPaNHPFAtta~~iDEdlAq~NVyQk~GVP~R 265 (287)
-|.|||. +.|..+--+.-.-|||.- .=+-||+-++.|. +||||.|-
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~M-~FEWDe~K~~~Nl-~KHGVsFe 55 (114)
T 3u97_A 7 HGKPIPNPLLGLDSTENLYFQGIDPFTM-KIIWDEPKRQTNI-AKHGLDFA 55 (114)
T ss_dssp --------------------------CC-EEECCHHHHHHHH-HHHSCCGG
T ss_pred CCCcCCCcccccccccceeEeccCCCce-eeEECHHHHHHHH-HHHCcCHH
Confidence 3666764 456556666777788863 2356999999997 89999996
No 18
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=21.29 E-value=35 Score=31.54 Aligned_cols=12 Identities=33% Similarity=0.902 Sum_probs=9.9
Q ss_pred ceeeecCCCCcc
Q 023096 230 TVRWIPANHPFA 241 (287)
Q Consensus 230 tVRWIPaNHPFA 241 (287)
.+-|||.||||-
T Consensus 203 SL~~VP~nHp~L 214 (386)
T 3o2t_A 203 SLDRIPRDHPYI 214 (386)
T ss_dssp CGGGSCTTCSSS
T ss_pred CHhhCCCCCCcC
Confidence 355999999996
No 19
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=20.13 E-value=33 Score=31.50 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=25.7
Q ss_pred hHHHHHhcccccCCcCCCCCCccCCCCCCcceeecCCCcc-ceecc
Q 023096 137 VEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNST-MEMCG 181 (287)
Q Consensus 137 VaDLvRRGQLrSdrRGis~plkYeDPFNNPlVKv~k~~St-veM~G 181 (287)
|.+|++.|-++ |..++.|+++|.+-|.|.+++ .+||-
T Consensus 38 i~~ll~~G~I~--------~~~~~s~~~spv~~V~Kk~g~k~R~~v 75 (555)
T 1mu2_A 38 CEKMEKEGQLE--------EAPPTNPYNTPTFAIKKKDKNKWRMLI 75 (555)
T ss_dssp HHHHHHHTSEE--------ECCTTCCCBBCEEECCCCC----CEEE
T ss_pred HHHHHHCCCeE--------ECCCCCCCCCceEEecCCCCCceEEEE
Confidence 46677776665 444568999999999998875 88874
No 20
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=20.04 E-value=99 Score=19.42 Aligned_cols=13 Identities=15% Similarity=0.370 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHH
Q 023096 106 FAIGLSLSTAFLV 118 (287)
Q Consensus 106 f~~~~cv~~a~l~ 118 (287)
+++++.+++++++
T Consensus 15 I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 15 VIGGVAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHH
Confidence 3445556666655
Done!