Query 023096
Match_columns 287
No_of_seqs 14 out of 16
Neff 1.7
Searched_HMMs 13730
Date Mon Mar 25 16:18:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023096.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023096hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gpja2 c.2.1.7 (A:144-302) Gl 60.1 3.7 0.00027 30.6 3.6 34 191-230 99-132 (159)
2 d2epra1 g.37.1.1 (A:350-384) P 55.9 1.3 9.4E-05 28.4 0.3 12 174-185 5-16 (35)
3 d1hzta_ d.113.1.2 (A:) Isopent 48.1 3.4 0.00024 30.2 1.6 45 226-281 101-149 (153)
4 g1hym.1 d.40.1.1 (A:,B:) Tryps 38.2 9.6 0.0007 26.4 2.6 23 212-234 32-55 (68)
5 d1ax8a_ a.26.1.1 (A:) Leptin ( 37.0 8.3 0.00061 30.5 2.4 44 233-280 39-88 (144)
6 d1dwma_ d.40.1.1 (A:) Trypsin 34.7 12 0.00085 26.1 2.6 22 213-234 34-56 (69)
7 d1csei_ d.40.1.1 (I:) Eglin C 33.5 8.3 0.00061 26.4 1.6 22 213-234 27-49 (63)
8 d1ztwa1 e.8.1.2 (A:24-278) MML 28.9 15 0.0011 28.9 2.6 35 137-181 55-90 (255)
9 d1wiba_ d.47.1.1 (A:) 60S ribo 26.8 15 0.0011 26.7 2.1 18 218-235 3-20 (92)
10 d2zd1b1 e.8.1.2 (B:5-428) HIV- 24.8 19 0.0013 31.3 2.7 38 137-182 34-72 (424)
11 d1mu2a2 e.8.1.2 (A:3-429) HIV- 24.3 17 0.0012 31.6 2.4 37 137-181 36-73 (427)
12 d1to2i_ d.40.1.1 (I:) Chymotry 22.5 12 0.00089 25.6 0.8 22 213-234 29-51 (64)
13 d1yu5x1 a.14.1.1 (X:10-76) Vil 22.3 11 0.00078 26.2 0.5 13 219-231 17-29 (67)
14 d1hara_ e.8.1.2 (A:) HIV-1 rev 22.0 21 0.0015 28.2 2.2 37 137-181 38-75 (216)
15 d1pcsa_ b.6.1.1 (A:) Plastocya 21.9 27 0.002 23.3 2.6 23 206-237 13-35 (98)
16 d2p0ma1 a.119.1.2 (A:113-663) 21.8 16 0.0011 32.9 1.7 45 191-241 12-56 (551)
17 d2omzb1 b.1.6.1 (B:-2-101) E-c 21.1 14 0.001 25.0 0.9 18 206-223 2-19 (104)
No 1
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=60.07 E-value=3.7 Score=30.56 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=26.7
Q ss_pred ecHHHHHHHHhhhcccccccCceEeeccCCCCCCCCCCCc
Q 023096 191 LTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDT 230 (287)
Q Consensus 191 LT~Eqq~iHQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdt 230 (287)
+|+|.-....++|. +++|.+|+--| +|+||||+.
T Consensus 99 i~~~~i~~~~~~r~----~~~~~~iiDla--vPr~vd~~v 132 (159)
T d1gpja2 99 IHVDDVREALRKRD----RRSPILIIDIA--NPRDVEEGV 132 (159)
T ss_dssp BCHHHHHHHHHHCS----SCCCEEEEECC--SSCSBCTTG
T ss_pred ccHhhhHHHHHhcc----cCCCeEEEeec--CCCCcChhh
Confidence 68887766666663 57999999875 999999973
No 2
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.90 E-value=1.3 Score=28.39 Aligned_cols=12 Identities=42% Similarity=1.101 Sum_probs=9.8
Q ss_pred Cccceecceeee
Q 023096 174 NSTMEMCGKVYR 185 (287)
Q Consensus 174 ~StveM~GK~yR 185 (287)
+-.-+||||.||
T Consensus 5 ~~~ce~cgk~fr 16 (35)
T d2epra1 5 QVACEICGKIFR 16 (35)
T ss_dssp SEEETTTTEEES
T ss_pred hhhHHHHHHHHH
Confidence 445789999998
No 3
>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}
Probab=48.10 E-value=3.4 Score=30.16 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=30.3
Q ss_pred CCCC---ceeeecCCCCcccccccccHHHhhcccccccCCc-cchhhhHHHHHHHHHHhh
Q 023096 226 VDPD---TVRWIPANHPFATTANDIDEDLAQNNVYQKQGVP-FRIRAEHEALQKKLEALQ 281 (287)
Q Consensus 226 VDPd---tVRWIPaNHPFAtta~~iDEdlAq~NVyQk~GVP-~RikAEHEALq~klEa~~ 281 (287)
.||+ .++|++. +||.++++.+- ++- .| |++.++|++++++|.+.-
T Consensus 101 ~~~~Ev~~~~W~~~--------~el~~~i~~~p--~~~-tpW~~~~~~~~~~~~~l~~~~ 149 (153)
T d1hzta_ 101 INDDEVMDYQWCDL--------ADVLHGIDATP--WAF-SPWMVMQATNREARKRLSAFT 149 (153)
T ss_dssp CCTTTEEEEEEECH--------HHHHHHHHHCG--GGB-CHHHHHHHHSHHHHHHHHHTT
T ss_pred CChhheeEEEEeeH--------HHHHHHHHcCC--ccc-CHHHHHHHhhHHHHHHHHHHH
Confidence 3555 6799974 45655554432 111 35 899999999999998754
No 4
>g1hym.1 d.40.1.1 (A:,B:) Trypsin inhibitor V {Pumpkin (Cucurbita maxima) [TaxId: 3661]}
Probab=38.18 E-value=9.6 Score=26.41 Aligned_cols=23 Identities=30% Similarity=0.704 Sum_probs=20.3
Q ss_pred ceEeeccCCCCCCCCCCCcee-ee
Q 023096 212 PTIFLKEGDLIPPDVDPDTVR-WI 234 (287)
Q Consensus 212 PtvFLkEGdsvPpdVDPdtVR-WI 234 (287)
-.+.|.||.+++.|.++|-|| |+
T Consensus 32 ~v~vlp~gs~vt~Dfr~~RVrv~V 55 (68)
T g1hym.1 32 KAVILEEGTPVTKDFRCNRVRIWV 55 (68)
T ss_dssp EEEEEECCSCCCCCCCTTEEEEEE
T ss_pred eEEEeeCCCcccCcccCCEEEEEE
Confidence 367899999999999999998 44
No 5
>d1ax8a_ a.26.1.1 (A:) Leptin (obesity protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.99 E-value=8.3 Score=30.49 Aligned_cols=44 Identities=41% Similarity=0.690 Sum_probs=34.6
Q ss_pred eecCCCCcccccccccHHHhhcccccc--cCCccc----hhhhHHHHHHHHHHh
Q 023096 233 WIPANHPFATTANDIDEDLAQNNVYQK--QGVPFR----IRAEHEALQKKLEAL 280 (287)
Q Consensus 233 WIPaNHPFAtta~~iDEdlAq~NVyQk--~GVP~R----ikAEHEALq~klEa~ 280 (287)
.||++||+-+-+ .+|+-|| +||+ +-.|++ |....|-|+..|+.+
T Consensus 39 fiP~~~pi~sLs-smdqTL~---~yQ~iL~sLp~~~v~QI~nDlenLr~lL~~l 88 (144)
T d1ax8a_ 39 FIPGLHPILTLS-KMDQTLA---VYQQILTSMPSRNVIQISNDLENLRDLLHVL 88 (144)
T ss_dssp SCCCSSCCSSHH-HHHHHHH---HHHHHHHTSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccccccHH-HHHHHHH---HHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Confidence 499999998754 5888886 5776 466765 788899999999865
No 6
>d1dwma_ d.40.1.1 (A:) Trypsin inhibitor LUTI {Flax (Linum usitatissimum) [TaxId: 4006]}
Probab=34.73 E-value=12 Score=26.09 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.9
Q ss_pred eEeeccCCCCCCCCCCCcee-ee
Q 023096 213 TIFLKEGDLIPPDVDPDTVR-WI 234 (287)
Q Consensus 213 tvFLkEGdsvPpdVDPdtVR-WI 234 (287)
.+.|.||.+++.|.++|-|| |+
T Consensus 34 v~v~~~gs~vt~Dfr~~RVrv~V 56 (69)
T d1dwma_ 34 AIVLKEGSAMTKDFRCDRVWVIV 56 (69)
T ss_dssp EEEEETTCCCCCSCCTTEEEEEE
T ss_pred EEEeeCCCcccCcccCCEEEEEE
Confidence 67899999999999999998 54
No 7
>d1csei_ d.40.1.1 (I:) Eglin C {Leech (Hirudo medicinalis) [TaxId: 6421]}
Probab=33.51 E-value=8.3 Score=26.36 Aligned_cols=22 Identities=32% Similarity=0.532 Sum_probs=20.5
Q ss_pred eEeeccCCCCCCCCCCCcee-ee
Q 023096 213 TIFLKEGDLIPPDVDPDTVR-WI 234 (287)
Q Consensus 213 tvFLkEGdsvPpdVDPdtVR-WI 234 (287)
.++|.||.+++.|.++|-|| |+
T Consensus 27 v~v~p~gs~vt~Dfr~~RVrv~V 49 (63)
T d1csei_ 27 VYFLPEGSPVTLDLRYNRVRVFY 49 (63)
T ss_dssp EEEEETTCCEECCCCTTEEEEEE
T ss_pred EEEEeCCCcccCcccCCEEEEEE
Confidence 68999999999999999998 66
No 8
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=28.85 E-value=15 Score=28.95 Aligned_cols=35 Identities=26% Similarity=0.512 Sum_probs=27.8
Q ss_pred hHHHHHhcccccCCcCCCCCCccCCCCCCcceeecCCCcc-ceecc
Q 023096 137 VEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNST-MEMCG 181 (287)
Q Consensus 137 VaDLvRRGQLrSdrRGis~plkYeDPFNNPlVKv~k~~St-veM~G 181 (287)
|.+|...|.++- -+.||++|++=|.|.+++ ..||.
T Consensus 55 i~~ll~~G~I~p----------~~s~~~sp~~~V~Kk~~~~~R~v~ 90 (255)
T d1ztwa1 55 IQRLLDQGILVP----------CQSPWNTPLLPVKKPGTNDYRPVQ 90 (255)
T ss_dssp HHHHHHHTSEEE----------ECCSCBCCEEECCSSSSCCCCEEE
T ss_pred HHHHhhhceeee----------cCCCcccccccccccccceEEEee
Confidence 689999998863 134899999999998764 77886
No 9
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.82 E-value=15 Score=26.72 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=16.0
Q ss_pred cCCCCCCCCCCCceeeec
Q 023096 218 EGDLIPPDVDPDTVRWIP 235 (287)
Q Consensus 218 EGdsvPpdVDPdtVRWIP 235 (287)
.|.+-||-+||++|+.|=
T Consensus 3 ~~~~~ppK~dp~~v~~Ik 20 (92)
T d1wiba_ 3 SGSSGPPKFDPNEVKVVY 20 (92)
T ss_dssp CCCCCCCCCCSSSCEEEE
T ss_pred CcCCCCCCCCCCceEEEE
Confidence 588899999999999983
No 10
>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=24.79 E-value=19 Score=31.30 Aligned_cols=38 Identities=21% Similarity=0.473 Sum_probs=28.6
Q ss_pred hHHHHHhcccccCCcCCCCCCccCCCCCCcceeecCCCcc-ceecce
Q 023096 137 VEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNST-MEMCGK 182 (287)
Q Consensus 137 VaDLvRRGQLrSdrRGis~plkYeDPFNNPlVKv~k~~St-veM~GK 182 (287)
|.+|.+.|.++- ..=+.|||+|.+-|-|.+++ .+||.-
T Consensus 34 i~~ll~~G~I~~--------~~s~Sp~~sPvf~V~KKdg~k~R~~iD 72 (424)
T d2zd1b1 34 CTEMEKEGKISK--------IGPENPYNTPVFAIKKKDSTKWRKLVD 72 (424)
T ss_dssp HHHHHHTTSEEE--------CCTTCCCBBCEEEECCTTCSSCEEEEC
T ss_pred HHHHHHCCeeEe--------cCCCCCCcCCeEEEEeCCCCceEEEEc
Confidence 477888888762 11257999999999998876 888853
No 11
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=24.26 E-value=17 Score=31.56 Aligned_cols=37 Identities=24% Similarity=0.437 Sum_probs=26.3
Q ss_pred hHHHHHhcccccCCcCCCCCCccCCCCCCcceeecCCC-ccceecc
Q 023096 137 VEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSN-STMEMCG 181 (287)
Q Consensus 137 VaDLvRRGQLrSdrRGis~plkYeDPFNNPlVKv~k~~-StveM~G 181 (287)
|.+|.+.|.++. -..+.|||.|.+=|-|.+ ...+||.
T Consensus 36 i~ell~~G~I~~--------~ps~Sp~~sPvf~V~KKd~gk~Rl~v 73 (427)
T d1mu2a2 36 CEKMEKEGQLEE--------APPTNPYNTPTFAIKKKDKNKWRMLI 73 (427)
T ss_dssp HHHHHHHTSEEE--------CCTTCCCBBCEEECCCCC----CEEE
T ss_pred HHHHHHCCeEEe--------CCCCCcCcCceEEEEcCCCCCcEEEE
Confidence 578899998872 113679999999998887 4578875
No 12
>d1to2i_ d.40.1.1 (I:) Chymotrypsin inhibitor CI-2 {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=22.50 E-value=12 Score=25.58 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.8
Q ss_pred eEeeccCCCCCCCCCCCcee-ee
Q 023096 213 TIFLKEGDLIPPDVDPDTVR-WI 234 (287)
Q Consensus 213 tvFLkEGdsvPpdVDPdtVR-WI 234 (287)
.+.|.||.+++.|.++|-|| |+
T Consensus 29 v~v~p~gs~vt~Dfr~~RVrv~V 51 (64)
T d1to2i_ 29 IIVLPVGTIVTKEYRIDRVRLFV 51 (64)
T ss_dssp EEEEETTCEEECBCCTTEEEEEE
T ss_pred EEEecCCCcccCcccCCEEEEEE
Confidence 67899999999999999998 44
No 13
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=22.30 E-value=11 Score=26.25 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCce
Q 023096 219 GDLIPPDVDPDTV 231 (287)
Q Consensus 219 GdsvPpdVDPdtV 231 (287)
.+++|+||||.-.
T Consensus 17 ~~~lP~gVD~~~l 29 (67)
T d1yu5x1 17 AEDLPRGVDPSRK 29 (67)
T ss_dssp GGGSCTTCCTTCG
T ss_pred cccCCCCCChHHH
Confidence 5789999999754
No 14
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=22.02 E-value=21 Score=28.16 Aligned_cols=37 Identities=22% Similarity=0.477 Sum_probs=22.0
Q ss_pred hHHHHHhcccccCCcCCCCCCccCCCCCCcceeecCCCcc-ceecc
Q 023096 137 VEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNST-MEMCG 181 (287)
Q Consensus 137 VaDLvRRGQLrSdrRGis~plkYeDPFNNPlVKv~k~~St-veM~G 181 (287)
+.+|.+.|.++- ..=..|||+|.+=|-|.+++ ..||.
T Consensus 38 i~~ll~~G~I~~--------~~s~s~~~sPv~~v~Kk~g~k~R~~v 75 (216)
T d1hara_ 38 CTEMEKEGKISK--------IGPENPYNTPVFAIKKKDSTKWAKLV 75 (216)
T ss_dssp HHHHHHTTSEEE--------CCTTCCCBCCEEEC-------CCEEE
T ss_pred HHHHHHCCcEEE--------CCCCCCCcceEEEEEeCCCCcceeec
Confidence 467777777762 11246899999999988876 77875
No 15
>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]}
Probab=21.94 E-value=27 Score=23.31 Aligned_cols=23 Identities=26% Similarity=0.679 Sum_probs=17.9
Q ss_pred cccccCceEeeccCCCCCCCCCCCceeeecCC
Q 023096 206 AYQWKRPTIFLKEGDLIPPDVDPDTVRWIPAN 237 (287)
Q Consensus 206 AYqWKRPtvFLkEGdsvPpdVDPdtVRWIPaN 237 (287)
.+.|.-++|-++.|| ||+|+..+
T Consensus 13 ~~~F~P~~i~v~~Gd---------tV~~~n~~ 35 (98)
T d1pcsa_ 13 ALVFEPSTVTIKAGE---------EVKWVNNK 35 (98)
T ss_dssp CSSEESSEEEECTTC---------EEEEEECS
T ss_pred ceEEeCCEEEECCCC---------EEEEeECC
Confidence 356777888899996 89999543
No 16
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=21.78 E-value=16 Score=32.94 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=34.6
Q ss_pred ecHHHHHHHHhhhcccccccCceEeeccCCCCCCCCCCCceeeecCCCCcc
Q 023096 191 LTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVRWIPANHPFA 241 (287)
Q Consensus 191 LT~Eqq~iHQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdtVRWIPaNHPFA 241 (287)
|=+||+..--+-|.+.|+|+.- .+-+|-.||+.+++.||.+--|.
T Consensus 12 ~~~~~R~~EL~~~~~~Y~w~~~------~~G~P~~~~~~~~~~lP~de~f~ 56 (551)
T d2p0ma1 12 LFQKHREQELEERRKLYQWGSW------KEGLILNVAGSKLTDLPVDERFL 56 (551)
T ss_dssp TTHHHHHHHHHHHHHHSCEECS------STTSCCEESCSSGGGSCGGGSCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCC------CCCCCcccCccccccCChhhccc
Confidence 4466666655666688999742 33489999999999999998886
No 17
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.05 E-value=14 Score=24.99 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.3
Q ss_pred cccccCceEeeccCCCCC
Q 023096 206 AYQWKRPTIFLKEGDLIP 223 (287)
Q Consensus 206 AYqWKRPtvFLkEGdsvP 223 (287)
.|+|.-|+|++.|.++-|
T Consensus 2 ~~~w~~~pi~v~EN~~~~ 19 (104)
T d2omzb1 2 LGSWVIPPISCPENEKGP 19 (104)
T ss_dssp STTEECCCCCEESSCCSS
T ss_pred CCcccCCcEEEeCCCCCC
Confidence 589999999999988644
Done!