Query 023097
Match_columns 287
No_of_seqs 197 out of 1390
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:25:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2723 BglB Beta-glucosidase/ 100.0 3.6E-81 7.8E-86 597.4 23.3 256 22-282 2-259 (460)
2 KOG0626 Beta-glucosidase, lact 100.0 4.4E-80 9.5E-85 594.2 21.8 259 19-278 32-302 (524)
3 PLN02998 beta-glucosidase 100.0 8.4E-80 1.8E-84 603.2 23.6 260 19-281 26-295 (497)
4 PLN02849 beta-glucosidase 100.0 2.5E-79 5.4E-84 600.6 24.4 260 17-281 23-291 (503)
5 PLN02814 beta-glucosidase 100.0 1.1E-78 2.4E-83 596.2 23.9 257 19-281 23-289 (504)
6 PRK13511 6-phospho-beta-galact 100.0 2.3E-78 5E-83 591.2 23.8 249 22-281 3-252 (469)
7 TIGR01233 lacG 6-phospho-beta- 100.0 1.3E-77 2.7E-82 585.2 24.2 248 23-281 3-251 (467)
8 PRK09593 arb 6-phospho-beta-gl 100.0 7.9E-77 1.7E-81 580.8 24.2 255 21-281 3-273 (478)
9 PRK09589 celA 6-phospho-beta-g 100.0 2.8E-76 6.1E-81 576.7 24.1 253 23-281 3-272 (476)
10 PRK15014 6-phospho-beta-glucos 100.0 1.4E-75 3E-80 571.7 25.3 256 20-281 2-274 (477)
11 PF00232 Glyco_hydro_1: Glycos 100.0 7.7E-77 1.7E-81 579.4 16.0 253 22-281 3-257 (455)
12 PRK09852 cryptic 6-phospho-bet 100.0 9.2E-75 2E-79 565.1 24.9 253 23-281 3-271 (474)
13 TIGR03356 BGL beta-galactosida 100.0 7.3E-74 1.6E-78 553.9 23.8 251 24-281 1-251 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.5 7.2E-14 1.6E-18 133.4 8.2 108 77-189 10-140 (374)
15 PF00150 Cellulase: Cellulase 99.5 2.2E-13 4.8E-18 123.2 9.4 110 78-191 22-135 (281)
16 smart00633 Glyco_10 Glycosyl h 99.0 2.5E-09 5.4E-14 97.1 9.2 84 98-190 1-86 (254)
17 COG1874 LacA Beta-galactosidas 98.8 1.2E-08 2.5E-13 103.5 7.1 118 79-201 32-176 (673)
18 COG2730 BglC Endoglucanase [Ca 98.5 5.8E-07 1.3E-11 87.1 9.5 109 80-189 76-193 (407)
19 PF01229 Glyco_hydro_39: Glyco 98.3 2E-06 4.4E-11 85.1 8.9 141 79-245 41-202 (486)
20 PF00331 Glyco_hydro_10: Glyco 98.2 1.1E-05 2.4E-10 75.8 10.1 125 24-190 6-137 (320)
21 PF01301 Glyco_hydro_35: Glyco 98.0 1.8E-05 3.9E-10 74.4 8.3 109 78-188 25-151 (319)
22 PF07745 Glyco_hydro_53: Glyco 97.7 0.001 2.2E-08 62.9 14.4 141 80-247 27-177 (332)
23 PLN03059 beta-galactosidase; P 97.4 0.0009 2E-08 69.7 10.6 114 72-188 49-188 (840)
24 COG3693 XynA Beta-1,4-xylanase 97.3 0.00069 1.5E-08 63.2 7.1 86 97-189 66-153 (345)
25 PF01373 Glyco_hydro_14: Glyco 97.3 0.00038 8.3E-09 66.9 5.4 99 76-178 15-144 (402)
26 PF14587 Glyco_hydr_30_2: O-Gl 97.2 0.00065 1.4E-08 65.0 6.2 99 88-189 58-185 (384)
27 PLN02161 beta-amylase 97.1 0.0012 2.6E-08 64.9 7.3 102 73-178 113-253 (531)
28 PLN02803 beta-amylase 97.1 0.0011 2.4E-08 65.4 7.1 98 77-178 107-243 (548)
29 PF13204 DUF4038: Protein of u 97.1 0.0026 5.5E-08 59.1 9.0 102 81-187 34-156 (289)
30 PLN00197 beta-amylase; Provisi 97.1 0.0012 2.7E-08 65.4 7.0 98 77-178 127-263 (573)
31 PLN02801 beta-amylase 97.0 0.0028 6.1E-08 62.4 8.2 100 75-178 35-173 (517)
32 PLN02905 beta-amylase 96.9 0.0025 5.5E-08 64.0 7.5 100 74-177 283-421 (702)
33 PLN02705 beta-amylase 96.8 0.0041 8.8E-08 62.4 7.6 98 76-177 267-403 (681)
34 PF02836 Glyco_hydro_2_C: Glyc 96.7 0.011 2.3E-07 54.8 9.2 93 76-188 35-133 (298)
35 PRK10150 beta-D-glucuronidase; 96.2 0.019 4.1E-07 58.5 8.5 93 78-188 314-419 (604)
36 PF14488 DUF4434: Domain of un 96.1 0.036 7.8E-07 47.4 8.6 103 77-189 20-132 (166)
37 KOG0496 Beta-galactosidase [Ca 96.1 0.038 8.3E-07 56.0 9.7 108 78-188 50-176 (649)
38 PRK09525 lacZ beta-D-galactosi 94.4 0.14 3.1E-06 55.4 8.3 90 76-188 370-464 (1027)
39 PRK10340 ebgA cryptic beta-D-g 92.8 0.46 1E-05 51.5 8.9 91 76-187 354-450 (1021)
40 PF07488 Glyco_hydro_67M: Glyc 92.6 0.94 2E-05 42.3 9.4 93 76-176 56-150 (328)
41 COG3664 XynB Beta-xylosidase [ 92.0 0.28 6.1E-06 47.4 5.4 100 86-191 14-118 (428)
42 COG3867 Arabinogalactan endo-1 91.1 6.4 0.00014 37.0 13.0 143 81-247 67-223 (403)
43 COG3250 LacZ Beta-galactosidas 90.7 1 2.2E-05 47.7 8.4 89 74-188 318-408 (808)
44 smart00642 Aamy Alpha-amylase 89.9 0.7 1.5E-05 39.3 5.4 64 76-139 18-91 (166)
45 PF03198 Glyco_hydro_72: Gluca 89.9 1.7 3.7E-05 40.8 8.2 89 78-187 54-145 (314)
46 COG3934 Endo-beta-mannanase [C 85.8 0.32 6.9E-06 48.0 0.8 109 79-189 28-150 (587)
47 PF02638 DUF187: Glycosyl hydr 82.2 5.8 0.00013 37.2 7.7 96 77-175 19-154 (311)
48 PF00128 Alpha-amylase: Alpha 81.7 2.3 5.1E-05 38.1 4.7 58 80-139 7-73 (316)
49 PRK09058 coproporphyrinogen II 81.3 3.8 8.1E-05 40.4 6.3 128 79-223 162-292 (449)
50 PF14871 GHL6: Hypothetical gl 81.2 4.6 9.9E-05 33.1 5.8 57 82-140 5-66 (132)
51 PF12876 Cellulase-like: Sugar 80.8 2.8 6E-05 31.6 4.1 19 170-188 1-22 (88)
52 PRK12313 glycogen branching en 80.6 7.4 0.00016 40.1 8.4 92 77-175 170-302 (633)
53 TIGR03581 EF_0839 conserved hy 80.5 9.6 0.00021 34.1 7.8 80 72-164 130-231 (236)
54 KOG2233 Alpha-N-acetylglucosam 80.1 5.1 0.00011 39.9 6.6 136 76-234 77-273 (666)
55 cd06592 GH31_glucosidase_KIAA1 80.0 9.8 0.00021 35.4 8.4 106 79-188 32-167 (303)
56 PRK05402 glycogen branching en 80.0 8.2 0.00018 40.4 8.6 90 79-175 267-397 (726)
57 PRK05799 coproporphyrinogen II 79.7 3.2 7E-05 39.5 5.2 124 79-222 98-226 (374)
58 PRK09936 hypothetical protein; 79.2 14 0.00031 34.4 8.9 98 79-188 40-145 (296)
59 PLN02361 alpha-amylase 78.1 2.8 6.2E-05 40.8 4.2 65 74-138 26-96 (401)
60 cd04733 OYE_like_2_FMN Old yel 77.7 42 0.00091 31.6 12.0 146 101-261 63-238 (338)
61 PF10566 Glyco_hydro_97: Glyco 77.1 10 0.00022 35.1 7.3 101 73-173 28-149 (273)
62 PLN00196 alpha-amylase; Provis 76.7 3.6 7.8E-05 40.4 4.5 64 75-138 42-112 (428)
63 cd02803 OYE_like_FMN_family Ol 76.1 29 0.00062 32.2 10.3 145 102-261 62-230 (327)
64 cd07939 DRE_TIM_NifV Streptomy 74.1 8.3 0.00018 34.9 6.0 60 79-139 71-131 (259)
65 cd07945 DRE_TIM_CMS Leptospira 73.9 8.6 0.00019 35.5 6.1 66 78-144 75-141 (280)
66 TIGR02403 trehalose_treC alpha 73.5 7 0.00015 39.5 5.8 58 75-139 25-96 (543)
67 TIGR02402 trehalose_TreZ malto 73.1 5.6 0.00012 40.2 5.0 57 76-139 110-181 (542)
68 PF12891 Glyco_hydro_44: Glyco 73.1 10 0.00022 34.4 6.0 143 118-280 24-216 (239)
69 PRK12581 oxaloacetate decarbox 72.4 12 0.00027 37.2 7.1 57 75-145 98-159 (468)
70 PRK05692 hydroxymethylglutaryl 72.4 14 0.0003 34.2 7.1 85 78-172 80-166 (287)
71 cd06600 GH31_MGAM-like This fa 72.3 56 0.0012 30.5 11.3 79 111-190 57-164 (317)
72 PRK10933 trehalose-6-phosphate 71.2 9.6 0.00021 38.6 6.2 63 75-139 31-102 (551)
73 TIGR01515 branching_enzym alph 70.8 23 0.0005 36.4 8.9 89 80-175 159-288 (613)
74 cd03174 DRE_TIM_metallolyase D 70.4 12 0.00025 33.5 6.0 61 80-141 77-138 (265)
75 PRK07379 coproporphyrinogen II 70.2 14 0.00031 35.7 6.9 127 79-223 114-243 (400)
76 PRK09441 cytoplasmic alpha-amy 70.2 7.9 0.00017 38.3 5.3 65 74-139 19-102 (479)
77 COG3589 Uncharacterized conser 68.6 19 0.00041 34.3 7.0 70 82-166 21-90 (360)
78 TIGR02090 LEU1_arch isopropylm 68.5 13 0.00028 35.6 6.1 106 78-189 72-197 (363)
79 TIGR01210 conserved hypothetic 67.9 24 0.00053 33.0 7.8 108 80-202 117-229 (313)
80 cd06543 GH18_PF-ChiA-like PF-C 67.5 21 0.00046 33.2 7.2 84 84-175 19-104 (294)
81 PRK14705 glycogen branching en 66.9 28 0.00061 38.8 8.9 91 83-175 772-897 (1224)
82 cd07948 DRE_TIM_HCS Saccharomy 66.6 8.9 0.00019 35.0 4.4 62 77-139 71-133 (262)
83 PRK14041 oxaloacetate decarbox 66.2 19 0.0004 35.9 6.9 57 74-144 87-148 (467)
84 PRK03705 glycogen debranching 65.9 12 0.00026 38.8 5.7 55 83-139 185-263 (658)
85 PRK14040 oxaloacetate decarbox 65.7 19 0.00042 36.9 7.1 52 75-140 90-146 (593)
86 PRK10785 maltodextrin glucosid 65.5 13 0.00027 38.2 5.7 54 79-139 181-247 (598)
87 PLN02746 hydroxymethylglutaryl 65.2 18 0.0004 34.5 6.4 66 78-144 122-189 (347)
88 cd06593 GH31_xylosidase_YicI Y 65.2 37 0.00079 31.4 8.4 106 79-188 26-161 (308)
89 TIGR00433 bioB biotin syntheta 64.5 16 0.00035 33.3 5.8 57 78-138 121-178 (296)
90 TIGR02456 treS_nterm trehalose 64.4 13 0.00028 37.5 5.5 57 76-139 27-97 (539)
91 PRK09505 malS alpha-amylase; R 64.4 14 0.00031 38.5 5.9 61 79-139 232-313 (683)
92 PRK06294 coproporphyrinogen II 64.3 21 0.00046 34.1 6.8 94 79-190 102-199 (370)
93 cd06598 GH31_transferase_CtsZ 64.2 44 0.00096 31.2 8.8 107 81-190 28-168 (317)
94 COG1523 PulA Type II secretory 63.9 13 0.00028 38.9 5.4 56 83-139 206-286 (697)
95 PLN02784 alpha-amylase 63.9 12 0.00027 39.9 5.3 65 74-138 518-588 (894)
96 cd02932 OYE_YqiM_FMN Old yello 62.9 1.3E+02 0.0029 28.1 12.6 40 102-142 62-101 (336)
97 cd06603 GH31_GANC_GANAB_alpha 62.6 38 0.00083 31.9 8.1 80 112-191 58-167 (339)
98 PRK00366 ispG 4-hydroxy-3-meth 62.0 43 0.00093 32.2 8.1 72 87-170 98-169 (360)
99 cd07944 DRE_TIM_HOA_like 4-hyd 61.2 26 0.00057 32.0 6.5 47 80-140 85-131 (266)
100 cd06601 GH31_lyase_GLase GLase 61.0 41 0.00089 31.8 7.9 80 111-192 57-139 (332)
101 PF03659 Glyco_hydro_71: Glyco 60.7 42 0.00091 32.5 8.1 51 78-139 18-68 (386)
102 cd07937 DRE_TIM_PC_TC_5S Pyruv 60.7 40 0.00087 30.9 7.6 47 79-139 93-139 (275)
103 PLN02447 1,4-alpha-glucan-bran 60.5 16 0.00034 38.6 5.4 87 82-175 256-383 (758)
104 PRK12858 tagatose 1,6-diphosph 60.3 30 0.00064 33.0 6.8 52 83-138 112-163 (340)
105 PRK14510 putative bifunctional 59.3 17 0.00036 40.6 5.6 59 81-139 191-268 (1221)
106 PRK12568 glycogen branching en 59.3 15 0.00033 38.6 5.0 90 79-175 271-401 (730)
107 cd02742 GH20_hexosaminidase Be 58.9 24 0.00052 32.7 5.9 62 79-147 18-98 (303)
108 PF07071 DUF1341: Protein of u 57.8 9.4 0.0002 33.8 2.7 55 76-136 134-207 (218)
109 PRK14511 maltooligosyl trehalo 57.7 17 0.00037 38.9 5.2 56 77-139 20-90 (879)
110 cd06591 GH31_xylosidase_XylS X 57.6 77 0.0017 29.6 9.1 80 111-191 59-164 (319)
111 COG1501 Alpha-glucosidases, fa 57.4 32 0.0007 36.4 7.1 100 89-192 294-421 (772)
112 PRK11858 aksA trans-homoaconit 57.4 33 0.00072 33.0 6.7 59 80-139 78-137 (378)
113 cd06602 GH31_MGAM_SI_GAA This 57.3 42 0.0009 31.8 7.3 68 121-189 69-168 (339)
114 TIGR02660 nifV_homocitr homoci 57.1 31 0.00067 33.0 6.5 61 79-140 74-135 (365)
115 TIGR03471 HpnJ hopanoid biosyn 56.6 44 0.00096 32.9 7.7 77 79-169 286-364 (472)
116 TIGR00612 ispG_gcpE 1-hydroxy- 56.5 50 0.0011 31.5 7.5 86 70-170 75-160 (346)
117 COG3534 AbfA Alpha-L-arabinofu 55.9 50 0.0011 32.8 7.6 97 79-188 50-175 (501)
118 PRK05628 coproporphyrinogen II 55.8 49 0.0011 31.5 7.6 105 79-201 107-215 (375)
119 KOG1065 Maltase glucoamylase a 55.7 54 0.0012 34.8 8.2 102 83-191 317-453 (805)
120 TIGR03234 OH-pyruv-isom hydrox 54.6 30 0.00065 30.7 5.6 59 77-138 84-143 (254)
121 PRK13523 NADPH dehydrogenase N 54.5 2E+02 0.0042 27.3 12.0 135 111-261 74-229 (337)
122 cd07941 DRE_TIM_LeuA3 Desulfob 53.5 37 0.00081 31.0 6.2 61 80-141 81-142 (273)
123 COG2100 Predicted Fe-S oxidore 53.5 38 0.00081 32.4 6.1 83 73-171 197-284 (414)
124 cd07938 DRE_TIM_HMGL 3-hydroxy 53.4 49 0.0011 30.3 6.9 85 78-172 74-160 (274)
125 TIGR02401 trehalose_TreY malto 52.9 23 0.00049 37.8 5.1 58 78-142 17-91 (825)
126 TIGR02100 glgX_debranch glycog 52.9 31 0.00066 36.1 6.0 56 83-139 190-266 (688)
127 cd07940 DRE_TIM_IPMS 2-isoprop 52.7 36 0.00078 30.9 5.9 59 79-139 71-135 (268)
128 PRK08599 coproporphyrinogen II 51.1 52 0.0011 31.3 7.0 96 79-191 99-197 (377)
129 PRK14507 putative bifunctional 51.1 38 0.00083 39.0 6.7 54 79-139 760-828 (1693)
130 PRK12399 tagatose 1,6-diphosph 51.0 72 0.0016 30.2 7.6 58 83-144 111-168 (324)
131 PRK14706 glycogen branching en 50.7 23 0.0005 36.6 4.7 90 84-175 175-299 (639)
132 PRK12331 oxaloacetate decarbox 50.4 52 0.0011 32.6 6.9 56 75-144 89-149 (448)
133 PLN02960 alpha-amylase 49.7 29 0.00063 37.2 5.3 94 75-175 414-549 (897)
134 cd06545 GH18_3CO4_chitinase Th 49.6 51 0.0011 29.5 6.3 79 96-176 26-130 (253)
135 PF01055 Glyco_hydro_31: Glyco 48.8 75 0.0016 30.8 7.8 108 79-190 45-184 (441)
136 PRK04161 tagatose 1,6-diphosph 48.4 84 0.0018 29.9 7.6 58 82-143 112-169 (329)
137 TIGR03217 4OH_2_O_val_ald 4-hy 48.2 1.6E+02 0.0034 27.9 9.6 93 79-188 89-200 (333)
138 TIGR00539 hemN_rel putative ox 47.6 43 0.00093 31.8 5.8 94 79-189 99-195 (360)
139 cd06565 GH20_GcnA-like Glycosy 47.5 55 0.0012 30.4 6.3 62 79-148 19-87 (301)
140 COG0366 AmyA Glycosidases [Car 47.4 34 0.00075 33.2 5.2 51 81-138 33-97 (505)
141 cd07943 DRE_TIM_HOA 4-hydroxy- 47.4 55 0.0012 29.6 6.2 47 79-139 87-133 (263)
142 TIGR01108 oadA oxaloacetate de 47.0 57 0.0012 33.4 6.8 51 80-144 94-144 (582)
143 PRK05660 HemN family oxidoredu 47.0 70 0.0015 30.7 7.1 94 79-189 106-202 (378)
144 COG5520 O-Glycosyl hydrolase [ 46.8 53 0.0012 31.7 6.0 94 88-190 77-181 (433)
145 PRK08255 salicylyl-CoA 5-hydro 46.6 3.5E+02 0.0075 28.6 12.8 162 85-261 439-640 (765)
146 PRK01060 endonuclease IV; Prov 46.6 90 0.0019 28.0 7.5 51 79-135 14-64 (281)
147 cd06568 GH20_SpHex_like A subg 46.4 65 0.0014 30.4 6.7 63 79-148 20-102 (329)
148 cd06542 GH18_EndoS-like Endo-b 46.0 76 0.0016 28.3 6.9 55 117-175 50-104 (255)
149 PRK08446 coproporphyrinogen II 44.6 1E+02 0.0022 29.2 7.8 93 80-189 98-193 (350)
150 cd02930 DCR_FMN 2,4-dienoyl-Co 44.4 2.8E+02 0.0061 26.2 12.7 137 111-260 70-225 (353)
151 PLN02389 biotin synthase 43.9 60 0.0013 31.4 6.1 59 77-139 175-234 (379)
152 smart00729 Elp3 Elongator prot 43.5 1.2E+02 0.0026 25.0 7.4 58 77-138 97-157 (216)
153 PF10566 Glyco_hydro_97: Glyco 43.4 32 0.00068 31.8 4.0 68 79-158 108-175 (273)
154 TIGR00423 radical SAM domain p 43.3 1.9E+02 0.0041 26.8 9.3 58 79-144 106-170 (309)
155 TIGR01211 ELP3 histone acetylt 43.0 69 0.0015 32.4 6.6 106 79-202 205-316 (522)
156 PRK08195 4-hyroxy-2-oxovalerat 43.0 70 0.0015 30.3 6.4 94 79-189 90-202 (337)
157 PF00682 HMGL-like: HMGL-like 42.2 64 0.0014 28.3 5.7 80 79-173 65-149 (237)
158 TIGR01212 radical SAM protein, 41.8 61 0.0013 30.1 5.7 73 117-202 162-234 (302)
159 COG3280 TreY Maltooligosyl tre 41.6 59 0.0013 34.3 5.9 65 80-148 22-94 (889)
160 cd02874 GH18_CFLE_spore_hydrol 40.6 73 0.0016 29.4 6.1 87 83-175 16-134 (313)
161 TIGR01856 hisJ_fam histidinol 40.2 70 0.0015 28.7 5.7 61 118-180 15-78 (253)
162 COG0821 gcpE 1-hydroxy-2-methy 40.1 97 0.0021 29.6 6.6 72 86-170 91-162 (361)
163 TIGR00538 hemN oxygen-independ 39.9 28 0.00061 34.2 3.3 60 79-144 150-213 (455)
164 PLN02923 xylose isomerase 39.7 85 0.0018 31.0 6.3 153 32-199 18-196 (478)
165 cd06570 GH20_chitobiase-like_1 39.6 88 0.0019 29.3 6.4 63 79-147 20-94 (311)
166 PF02065 Melibiase: Melibiase; 39.4 2.5E+02 0.0054 27.3 9.7 96 79-175 60-183 (394)
167 cd06604 GH31_glucosidase_II_Ma 39.4 2E+02 0.0044 27.0 8.9 68 120-190 66-163 (339)
168 PRK05474 xylose isomerase; Pro 39.2 4E+02 0.0086 26.4 12.7 88 82-177 84-181 (437)
169 PRK07106 5-aminoimidazole-4-ca 38.9 41 0.00088 32.6 4.0 52 69-137 332-383 (390)
170 TIGR03551 F420_cofH 7,8-dideme 38.9 1.2E+02 0.0026 28.5 7.3 89 79-185 140-234 (343)
171 TIGR02629 L_rham_iso_rhiz L-rh 38.5 1.3E+02 0.0028 29.5 7.4 89 79-182 72-171 (412)
172 cd06599 GH31_glycosidase_Aec37 38.5 1.2E+02 0.0026 28.3 7.1 77 112-189 67-171 (317)
173 cd06525 GH25_Lyc-like Lyc mura 38.4 2.2E+02 0.0047 24.1 8.3 88 82-182 13-124 (184)
174 PF01261 AP_endonuc_2: Xylose 38.2 31 0.00067 28.9 2.9 62 76-138 70-132 (213)
175 PRK09856 fructoselysine 3-epim 38.0 38 0.00083 30.3 3.7 60 76-137 89-148 (275)
176 TIGR00542 hxl6Piso_put hexulos 37.7 48 0.001 29.9 4.2 61 76-138 93-153 (279)
177 PRK08208 coproporphyrinogen II 37.6 1.1E+02 0.0023 29.9 6.9 93 79-189 140-236 (430)
178 PRK08207 coproporphyrinogen II 37.5 64 0.0014 32.3 5.4 93 79-189 268-364 (488)
179 PRK12677 xylose isomerase; Pro 37.5 2.7E+02 0.0057 26.9 9.5 91 78-176 32-128 (384)
180 PLN02925 4-hydroxy-3-methylbut 37.5 1.1E+02 0.0023 32.2 7.0 51 119-170 211-261 (733)
181 PRK13347 coproporphyrinogen II 37.5 60 0.0013 31.9 5.2 91 79-187 151-245 (453)
182 TIGR01232 lacD tagatose 1,6-di 37.1 1.3E+02 0.0029 28.5 7.0 59 82-144 111-169 (325)
183 PF04914 DltD_C: DltD C-termin 37.1 1.2E+02 0.0026 24.8 6.1 57 117-177 35-91 (130)
184 COG5016 Pyruvate/oxaloacetate 36.9 1.4E+02 0.0031 29.4 7.3 57 74-144 90-151 (472)
185 PF05089 NAGLU: Alpha-N-acetyl 36.0 72 0.0016 30.4 5.2 71 116-188 93-185 (333)
186 COG0138 PurH AICAR transformyl 35.9 51 0.0011 33.0 4.2 56 69-141 457-513 (515)
187 PRK05904 coproporphyrinogen II 35.4 1.5E+02 0.0032 28.3 7.3 95 79-190 102-199 (353)
188 TIGR02026 BchE magnesium-proto 35.1 1.2E+02 0.0026 30.2 6.9 61 79-144 286-348 (497)
189 PRK07094 biotin synthase; Prov 34.7 67 0.0015 29.7 4.8 58 78-139 127-186 (323)
190 cd08576 GDPD_like_SMaseD_PLD G 34.5 3E+02 0.0065 25.3 8.8 105 79-189 9-126 (265)
191 cd06595 GH31_xylosidase_XylS-l 34.5 1.6E+02 0.0035 27.0 7.3 107 82-190 30-163 (292)
192 PRK09997 hydroxypyruvate isome 34.5 1.1E+02 0.0025 27.1 6.2 62 79-144 87-151 (258)
193 PF13812 PPR_3: Pentatricopept 34.4 40 0.00086 19.4 2.2 17 118-134 18-34 (34)
194 cd00019 AP2Ec AP endonuclease 34.3 1.7E+02 0.0038 26.2 7.4 54 77-136 10-64 (279)
195 TIGR00542 hxl6Piso_put hexulos 33.8 2.5E+02 0.0054 25.2 8.3 55 77-136 16-70 (279)
196 PRK09249 coproporphyrinogen II 33.4 1.3E+02 0.0028 29.5 6.8 92 79-188 150-245 (453)
197 PF02057 Glyco_hydro_59: Glyco 32.9 91 0.002 32.5 5.7 65 122-189 116-185 (669)
198 PRK06582 coproporphyrinogen II 32.7 1.4E+02 0.003 28.9 6.7 125 80-223 111-238 (390)
199 PRK09282 pyruvate carboxylase 32.6 1.4E+02 0.003 30.8 6.9 48 79-140 98-145 (592)
200 PRK10658 putative alpha-glucos 31.9 4.1E+02 0.0089 27.7 10.4 103 83-188 289-420 (665)
201 PF03511 Fanconi_A: Fanconi an 31.5 36 0.00079 24.3 1.8 39 101-142 19-57 (64)
202 TIGR02630 xylose_isom_A xylose 31.2 5.3E+02 0.011 25.5 12.9 68 83-158 84-156 (434)
203 cd02871 GH18_chitinase_D-like 31.1 1.6E+02 0.0035 27.3 6.7 51 118-175 60-110 (312)
204 PRK12330 oxaloacetate decarbox 30.9 1.6E+02 0.0035 29.7 6.9 48 76-137 91-143 (499)
205 PF00724 Oxidored_FMN: NADH:fl 30.7 2.7E+02 0.0059 26.2 8.3 164 83-261 42-238 (341)
206 PF04028 DUF374: Domain of unk 30.6 1.4E+02 0.0031 21.9 5.0 40 84-138 27-66 (74)
207 PF09314 DUF1972: Domain of un 30.6 1.1E+02 0.0023 26.6 5.0 52 119-178 106-157 (185)
208 PTZ00445 p36-lilke protein; Pr 30.5 81 0.0018 28.2 4.3 56 83-139 35-99 (219)
209 TIGR00674 dapA dihydrodipicoli 30.0 2.4E+02 0.0053 25.6 7.6 67 108-189 13-79 (285)
210 cd04734 OYE_like_3_FMN Old yel 29.8 4.8E+02 0.01 24.6 12.2 137 111-261 70-230 (343)
211 TIGR00587 nfo apurinic endonuc 29.6 1.3E+02 0.0028 27.2 5.7 58 79-142 13-70 (274)
212 cd06562 GH20_HexA_HexB-like Be 29.1 1.3E+02 0.0028 28.6 5.8 63 79-148 20-97 (348)
213 PTZ00445 p36-lilke protein; Pr 29.0 1.1E+02 0.0024 27.4 4.8 52 117-172 28-89 (219)
214 PRK13210 putative L-xylulose 5 29.0 3.2E+02 0.0069 24.3 8.2 54 78-136 17-70 (284)
215 PRK13210 putative L-xylulose 5 28.5 76 0.0016 28.4 4.0 59 78-139 95-154 (284)
216 cd07947 DRE_TIM_Re_CS Clostrid 28.0 88 0.0019 28.8 4.3 62 76-138 73-135 (279)
217 PF11790 Glyco_hydro_cc: Glyco 27.9 49 0.0011 29.6 2.5 24 165-189 54-77 (239)
218 PF01120 Alpha_L_fucos: Alpha- 27.8 1.1E+02 0.0024 29.0 5.0 59 83-142 97-162 (346)
219 PRK06256 biotin synthase; Vali 27.5 97 0.0021 28.9 4.6 57 78-138 150-207 (336)
220 COG3661 AguA Alpha-glucuronida 27.5 3.3E+02 0.0072 27.3 8.1 66 77-147 183-249 (684)
221 cd06563 GH20_chitobiase-like T 27.4 1.6E+02 0.0035 27.9 6.1 62 79-147 20-112 (357)
222 COG1453 Predicted oxidoreducta 27.3 1.6E+02 0.0035 28.5 6.0 87 85-183 12-116 (391)
223 TIGR02631 xylA_Arthro xylose i 27.1 5.6E+02 0.012 24.7 9.8 96 74-177 29-130 (382)
224 COG1902 NemA NADH:flavin oxido 27.0 5.7E+02 0.012 24.6 12.7 144 102-260 68-238 (363)
225 PRK09856 fructoselysine 3-epim 27.0 3.6E+02 0.0077 23.9 8.1 52 78-136 14-65 (275)
226 cd06564 GH20_DspB_LnbB-like Gl 26.9 1.8E+02 0.0039 27.2 6.3 63 79-148 19-109 (326)
227 TIGR00355 purH phosphoribosyla 26.9 78 0.0017 31.9 3.9 55 70-141 454-509 (511)
228 PRK09057 coproporphyrinogen II 26.7 2.4E+02 0.0052 27.0 7.2 126 79-223 103-231 (380)
229 cd00408 DHDPS-like Dihydrodipi 26.6 3.5E+02 0.0076 24.3 8.0 67 108-189 12-78 (281)
230 PRK14042 pyruvate carboxylase 26.5 2.3E+02 0.005 29.2 7.4 51 75-139 89-144 (596)
231 PRK00125 pyrF orotidine 5'-pho 26.4 72 0.0016 29.5 3.4 33 114-146 69-101 (278)
232 PF04551 GcpE: GcpE protein; 26.1 1.2E+02 0.0026 29.2 4.9 50 118-168 118-167 (359)
233 PRK13209 L-xylulose 5-phosphat 26.1 4E+02 0.0086 23.8 8.3 54 78-136 22-75 (283)
234 cd00950 DHDPS Dihydrodipicolin 25.9 3.1E+02 0.0067 24.8 7.5 66 108-188 15-80 (284)
235 PRK00881 purH bifunctional pho 25.6 1.1E+02 0.0024 30.9 4.7 50 71-137 457-506 (513)
236 PRK13209 L-xylulose 5-phosphat 25.6 82 0.0018 28.3 3.6 58 76-139 98-159 (283)
237 PF05913 DUF871: Bacterial pro 25.5 75 0.0016 30.5 3.4 52 80-139 17-68 (357)
238 PF07287 DUF1446: Protein of u 25.3 2.5E+02 0.0055 27.0 7.0 52 111-179 51-102 (362)
239 PF01624 MutS_I: MutS domain I 25.1 67 0.0015 25.1 2.6 60 73-138 24-84 (113)
240 cd02929 TMADH_HD_FMN Trimethyl 25.0 6.1E+02 0.013 24.2 11.7 130 109-253 75-231 (370)
241 PF02055 Glyco_hydro_30: O-Gly 24.9 1E+02 0.0022 31.0 4.4 68 121-190 156-236 (496)
242 PF04055 Radical_SAM: Radical 24.9 90 0.002 24.5 3.4 52 80-135 90-144 (166)
243 TIGR03699 mena_SCO4550 menaqui 24.9 1.2E+02 0.0025 28.5 4.6 53 79-138 142-201 (340)
244 cd01335 Radical_SAM Radical SA 24.8 1.8E+02 0.0038 23.5 5.3 58 79-139 87-146 (204)
245 PRK13537 nodulation ABC transp 24.7 1.1E+02 0.0025 28.2 4.5 30 111-140 168-197 (306)
246 PRK10426 alpha-glucosidase; Pr 24.6 2.8E+02 0.0061 28.7 7.6 104 81-187 225-364 (635)
247 PRK00694 4-hydroxy-3-methylbut 24.5 2.2E+02 0.0048 29.2 6.6 53 118-171 145-197 (606)
248 COG0635 HemN Coproporphyrinoge 24.3 3.3E+02 0.0071 26.6 7.7 125 80-224 137-265 (416)
249 TIGR01166 cbiO cobalt transpor 24.3 1.5E+02 0.0032 24.9 4.8 31 111-141 157-187 (190)
250 PRK09389 (R)-citramalate synth 24.3 1.1E+02 0.0023 30.7 4.4 63 78-141 74-137 (488)
251 PRK02048 4-hydroxy-3-methylbut 24.3 2.2E+02 0.0049 29.3 6.6 52 118-170 141-192 (611)
252 PF13119 DUF3973: Domain of un 24.1 34 0.00073 22.1 0.5 25 262-286 13-37 (41)
253 PF06777 DUF1227: Protein of u 23.9 1.5E+02 0.0033 24.8 4.6 68 118-186 16-85 (146)
254 COG5520 O-Glycosyl hydrolase [ 23.9 3.8E+02 0.0082 26.1 7.7 75 117-193 152-237 (433)
255 cd00311 TIM Triosephosphate is 23.9 1.8E+02 0.0039 26.3 5.4 48 84-139 78-125 (242)
256 COG2355 Zn-dependent dipeptida 23.4 1.2E+02 0.0026 28.7 4.2 57 81-142 112-171 (313)
257 PRK03170 dihydrodipicolinate s 23.3 3.7E+02 0.008 24.5 7.6 66 108-188 16-81 (292)
258 PRK13505 formate--tetrahydrofo 23.0 2E+02 0.0044 29.4 6.0 30 114-143 355-384 (557)
259 PRK08508 biotin synthase; Prov 22.8 1.9E+02 0.0041 26.4 5.5 56 79-138 101-157 (279)
260 PRK00164 moaA molybdenum cofac 22.4 3.7E+02 0.0081 24.8 7.5 54 79-136 107-163 (331)
261 PLN02891 IMP cyclohydrolase 22.4 1E+02 0.0022 31.3 3.8 54 71-141 489-545 (547)
262 PRK09432 metF 5,10-methylenete 22.3 2.8E+02 0.006 25.8 6.5 74 117-190 188-283 (296)
263 TIGR00419 tim triosephosphate 22.2 1.8E+02 0.004 25.6 5.0 43 84-138 75-117 (205)
264 PF00701 DHDPS: Dihydrodipicol 22.2 5.1E+02 0.011 23.4 8.3 66 108-188 16-81 (289)
265 COG3113 Predicted NTP binding 22.0 1.3E+02 0.0028 23.5 3.5 47 81-137 31-77 (99)
266 PRK08445 hypothetical protein; 21.8 5.4E+02 0.012 24.4 8.5 54 79-139 143-203 (348)
267 TIGR02455 TreS_stutzeri trehal 21.8 1.7E+02 0.0038 30.5 5.3 56 83-139 80-151 (688)
268 PRK11572 copper homeostasis pr 21.6 2.4E+02 0.0051 25.8 5.7 41 77-127 73-113 (248)
269 cd02933 OYE_like_FMN Old yello 21.4 6.9E+02 0.015 23.5 12.6 133 103-252 63-231 (338)
270 PF01740 STAS: STAS domain; I 21.3 1.5E+02 0.0032 22.7 3.9 28 111-138 60-87 (117)
271 cd06589 GH31 The enzymes of gl 21.1 3.3E+02 0.0072 24.4 6.7 89 80-190 27-120 (265)
272 PRK13398 3-deoxy-7-phosphohept 21.1 2.5E+02 0.0054 25.7 5.9 72 73-149 37-109 (266)
273 smart00052 EAL Putative diguan 21.1 1.5E+02 0.0033 25.2 4.4 61 71-137 149-209 (241)
274 cd00019 AP2Ec AP endonuclease 21.1 64 0.0014 29.0 2.0 60 75-137 83-142 (279)
275 COG3916 LasI N-acyl-L-homoseri 21.0 1.4E+02 0.0031 26.5 4.0 63 76-140 76-146 (209)
276 TIGR01235 pyruv_carbox pyruvat 21.0 3.1E+02 0.0068 30.6 7.5 23 75-97 618-645 (1143)
277 PLN02411 12-oxophytodienoate r 20.6 7.7E+02 0.017 23.8 10.4 124 111-248 80-240 (391)
278 TIGR02635 RhaI_grampos L-rhamn 20.6 4E+02 0.0087 25.8 7.4 87 79-181 42-136 (378)
279 PRK09493 glnQ glutamine ABC tr 20.5 1.7E+02 0.0038 25.5 4.6 30 111-140 166-195 (240)
280 PRK12822 phospho-2-dehydro-3-d 20.4 2.6E+02 0.0056 26.9 5.9 59 90-149 94-155 (356)
281 TIGR00676 fadh2 5,10-methylene 20.3 3.6E+02 0.0078 24.5 6.8 76 111-189 166-263 (272)
282 PLN02417 dihydrodipicolinate s 20.2 5.1E+02 0.011 23.6 7.8 67 108-189 16-82 (280)
283 smart00518 AP2Ec AP endonuclea 20.1 5E+02 0.011 22.9 7.7 22 115-136 81-102 (273)
284 COG0149 TpiA Triosephosphate i 20.1 2.1E+02 0.0047 26.1 5.1 48 84-139 82-129 (251)
No 1
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-81 Score=597.44 Aligned_cols=256 Identities=42% Similarity=0.755 Sum_probs=243.5
Q ss_pred CCCCCCceehhhhcccccccccCCCCCcCceeeeecc--CCCccccCCCCCcccccccCcHHHHHHHHHcCCCccccccC
Q 023097 22 TDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTH--TEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSIS 99 (287)
Q Consensus 22 ~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~--~~~~~~~~~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~si~ 99 (287)
.+||++||||+||||+|+||++++||||+|+||+|.+ .++.+..+..++.||||||||+|||+|||+||+++||+||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 4799999999999999999999999999999999998 46777778899999999999999999999999999999999
Q ss_pred cCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCcc
Q 023097 100 WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVK 179 (287)
Q Consensus 100 W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~ 179 (287)
||||+|+++|.++|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.|++++++|++||++|++||||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 99999998544799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCccccccCccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCceeeeCCCCHH
Q 023097 180 NWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIE 259 (287)
Q Consensus 180 ~w~t~NEP~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~AHa~a~~~~r~~~~~~~~~kIG~~~~~~~~~P~~~~p~ 259 (287)
+|+||||||+++.+||+.|.+||+.. +.+.++|++||+++|||+|++++|++.+ +.+||||++..+.||.+|+|+
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~--~~~~~~qa~hh~~lA~A~avk~~~~~~~---~~kIG~~~~~~p~YP~s~~p~ 236 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIV--DPKAAYQVAHHMLLAHALAVKAIKKINP---KGKVGIILNLTPAYPLSDKPE 236 (460)
T ss_pred EEEEecchhhhhcccccccccCCCcc--CHHHHHHHHHHHHHHHHHHHHHHHhhCC---cCceEEEeccCcCCCCCCCHH
Confidence 99999999999999999999999986 3678999999999999999999999863 339999999999999999999
Q ss_pred HHHHHHHHHhhhccccchhhhhc
Q 023097 260 DKSAAARRLDFQIGWYCLKYSVN 282 (287)
Q Consensus 260 Dv~Aa~~~~~~~n~~flDp~~~~ 282 (287)
|+.||+.++++.|++|+||+++-
T Consensus 237 dv~aA~~~~~~~n~~FlD~~~~G 259 (460)
T COG2723 237 DVKAAENADRFHNRFFLDAQVKG 259 (460)
T ss_pred HHHHHHHHHHHhhhhhcchhhcC
Confidence 99999999999999999999874
No 2
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-80 Score=594.19 Aligned_cols=259 Identities=60% Similarity=1.088 Sum_probs=247.5
Q ss_pred CCCCCCCCCceehhhhcccccccccCCCCCcCceeeeecc-CCCccccCCCCCcccccccCcHHHHHHHHHcCCCccccc
Q 023097 19 VSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTH-TEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFS 97 (287)
Q Consensus 19 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~-~~~~~~~~~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~s 97 (287)
+.+..||++|+||+||||||+||+.++|||++|+||++++ .++++.++.++++|||+||+|+|||+||++||+++||||
T Consensus 32 ~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRFS 111 (524)
T KOG0626|consen 32 FSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRFS 111 (524)
T ss_pred ccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEEE
Confidence 4467899999999999999999999999999999999997 455777788899999999999999999999999999999
Q ss_pred cCcCccccCCC--CCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhC
Q 023097 98 ISWSRIFPDGL--GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (287)
Q Consensus 98 i~W~ri~P~~~--g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~ 175 (287)
||||||+|.|. + .+|++|+++|.++|++|+++||+|+|||+|||+|++|+++||||+|++++++|.+||+.||++||
T Consensus 112 IsWSRIlP~G~~~~-gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fG 190 (524)
T KOG0626|consen 112 ISWSRILPNGRLTG-GVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFG 190 (524)
T ss_pred eehHhhCCCCCcCC-CcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhc
Confidence 99999999986 5 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCCccccccCccccccCCCC---------CCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEeee
Q 023097 176 DRVKNWITINEPLQTAVNGYCTGIFAPGR---------HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVV 246 (287)
Q Consensus 176 d~V~~w~t~NEP~~~~~~gy~~g~~~p~~---------~~~~~~~~~~~~hn~l~AHa~a~~~~r~~~~~~~~~kIG~~~ 246 (287)
|+|+.|+|+|||++++..||..|..|||+ .+++.++.|.|.|||++|||+|+++||+.++..|+|+||+++
T Consensus 191 DrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~ 270 (524)
T KOG0626|consen 191 DRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIAL 270 (524)
T ss_pred ccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEE
Confidence 99999999999999999999999999997 256788999999999999999999999998878999999999
Q ss_pred cCceeeeCCCCHHHHHHHHHHHhhhccccchh
Q 023097 247 DCEWAEANSDKIEDKSAAARRLDFQIGWYCLK 278 (287)
Q Consensus 247 ~~~~~~P~~~~p~Dv~Aa~~~~~~~n~~flDp 278 (287)
...|+.|++.+++|++||+|+.+|..+||++|
T Consensus 271 ~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p 302 (524)
T KOG0626|consen 271 SARWFEPYDDSKEDKEAAERALDFFLGWFLEP 302 (524)
T ss_pred eeeeeccCCCChHHHHHHHHHHHhhhhhhhcc
Confidence 99999999988999999999999999999996
No 3
>PLN02998 beta-glucosidase
Probab=100.00 E-value=8.4e-80 Score=603.17 Aligned_cols=260 Identities=52% Similarity=0.920 Sum_probs=239.7
Q ss_pred CCCCCCCCCceehhhhcccccccccCCCCCcCceeeeeccCCCccccCCCCCcccccccCcHHHHHHHHHcCCCcccccc
Q 023097 19 VSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSI 98 (287)
Q Consensus 19 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~si 98 (287)
+.+.+||++|+||+|||||||||++++||||+|+||.+.+ ++. .+..++++||||||||+|||+|||+||+++|||||
T Consensus 26 ~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~-~~~-~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSI 103 (497)
T PLN02998 26 YSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH-AGH-SGVAAGNVACDQYHKYKEDVKLMADMGLEAYRFSI 103 (497)
T ss_pred CccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-cCc-CCCCCCcccccHHHhhHHHHHHHHHcCCCeEEeec
Confidence 4556799999999999999999999999999999999887 442 22247788999999999999999999999999999
Q ss_pred CcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCc
Q 023097 99 SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRV 178 (287)
Q Consensus 99 ~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V 178 (287)
+|+||+|+++| .+|++||++|+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|+++|||+|
T Consensus 104 sWsRI~P~G~g-~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrV 182 (497)
T PLN02998 104 SWSRLLPSGRG-PINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRV 182 (497)
T ss_pred cHHhcCcCCCC-CcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcC
Confidence 99999999878 89999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred cEEEEecCCccccccCccccccCCCCCC----------CCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEeeecC
Q 023097 179 KNWITINEPLQTAVNGYCTGIFAPGRHQ----------HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDC 248 (287)
Q Consensus 179 ~~w~t~NEP~~~~~~gy~~g~~~p~~~~----------~~~~~~~~~~hn~l~AHa~a~~~~r~~~~~~~~~kIG~~~~~ 248 (287)
++|+|||||++++..||..|.+||+... .+.+..++++||+++|||+|++++|+.++..++++||++++.
T Consensus 183 k~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~ 262 (497)
T PLN02998 183 SHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYT 262 (497)
T ss_pred CEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeC
Confidence 9999999999999999999999998521 123457999999999999999999997544578999999999
Q ss_pred ceeeeCCCCHHHHHHHHHHHhhhccccchhhhh
Q 023097 249 EWAEANSDKIEDKSAAARRLDFQIGWYCLKYSV 281 (287)
Q Consensus 249 ~~~~P~~~~p~Dv~Aa~~~~~~~n~~flDp~~~ 281 (287)
.++||.+++|+|++||++++++.++||+||+++
T Consensus 263 ~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~ 295 (497)
T PLN02998 263 YGAVPLTNSVKDKQATARVNDFYIGWILHPLVF 295 (497)
T ss_pred CeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhC
Confidence 999999999999999999999999999999874
No 4
>PLN02849 beta-glucosidase
Probab=100.00 E-value=2.5e-79 Score=600.61 Aligned_cols=260 Identities=48% Similarity=0.895 Sum_probs=240.5
Q ss_pred CCCCCCCCCCCceehhhhcccccccccCCCCCcCceeeeeccCCCccccCCCCCcccccccCcHHHHHHHHHcCCCcccc
Q 023097 17 RNVSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRF 96 (287)
Q Consensus 17 ~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~ 96 (287)
..+.+.+||++|+||+|||||||||++++||||+|+||++++.++ +.++++||||||||+|||+|||+||+++|||
T Consensus 23 ~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~----~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRf 98 (503)
T PLN02849 23 SDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRN----MSNGDIACDGYHKYKEDVKLMVETGLDAFRF 98 (503)
T ss_pred CCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCC----CCCCCccccHHHhHHHHHHHHHHcCCCeEEE
Confidence 335567899999999999999999999999999999999887432 4578899999999999999999999999999
Q ss_pred ccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhCC
Q 023097 97 SISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGD 176 (287)
Q Consensus 97 si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d 176 (287)
||+|+||+|+++| .+|++|+++|+++|++|+++||+|+|||+|||+|+||+++||||.|++++++|++||+.|+++|||
T Consensus 99 SIsWsRI~P~G~g-~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgD 177 (503)
T PLN02849 99 SISWSRLIPNGRG-SVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGN 177 (503)
T ss_pred eccHHhcCcCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcC
Confidence 9999999999878 899999999999999999999999999999999999999899999999999999999999999999
Q ss_pred CccEEEEecCCccccccCccccccCCCCCC---------CCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEeeec
Q 023097 177 RVKNWITINEPLQTAVNGYCTGIFAPGRHQ---------HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVD 247 (287)
Q Consensus 177 ~V~~w~t~NEP~~~~~~gy~~g~~~p~~~~---------~~~~~~~~~~hn~l~AHa~a~~~~r~~~~~~~~~kIG~~~~ 247 (287)
+|++|+|+|||++++..||..|.+||+... ++.++.+++.||+++|||+|++++|++++..|+++||++++
T Consensus 178 rVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~ 257 (503)
T PLN02849 178 HVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLF 257 (503)
T ss_pred cCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 999999999999999999999999998632 12346899999999999999999999753346899999999
Q ss_pred CceeeeCCCCHHHHHHHHHHHhhhccccchhhhh
Q 023097 248 CEWAEANSDKIEDKSAAARRLDFQIGWYCLKYSV 281 (287)
Q Consensus 248 ~~~~~P~~~~p~Dv~Aa~~~~~~~n~~flDp~~~ 281 (287)
..++||.+++|+|+.||++++++.++||+||+++
T Consensus 258 ~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~ 291 (503)
T PLN02849 258 ALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIF 291 (503)
T ss_pred CceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhC
Confidence 9999999999999999999999999999999864
No 5
>PLN02814 beta-glucosidase
Probab=100.00 E-value=1.1e-78 Score=596.15 Aligned_cols=257 Identities=45% Similarity=0.842 Sum_probs=236.7
Q ss_pred CCCCCCCCCceehhhhcccccccccCCCCCcCceeeeeccCCCccccCCCCCcccccccCcHHHHHHHHHcCCCcccccc
Q 023097 19 VSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSI 98 (287)
Q Consensus 19 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~si 98 (287)
+.+.+||++|+||+||||||+||+++++|||+|+||++++. .++.++++||||||||+|||+|||+||+++|||||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSI 98 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSI 98 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEec
Confidence 34567999999999999999999999999999999998762 23457889999999999999999999999999999
Q ss_pred CcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCc
Q 023097 99 SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRV 178 (287)
Q Consensus 99 ~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V 178 (287)
+||||+|+++| .+|++|+++|+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|+++|||+|
T Consensus 99 sWsRI~P~G~g-~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrV 177 (504)
T PLN02814 99 SWSRLIPNGRG-LINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDV 177 (504)
T ss_pred cHhhcCcCCCC-CCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcC
Confidence 99999999878 89999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred cEEEEecCCccccccCccccccCCCCCC----------CCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEeeecC
Q 023097 179 KNWITINEPLQTAVNGYCTGIFAPGRHQ----------HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDC 248 (287)
Q Consensus 179 ~~w~t~NEP~~~~~~gy~~g~~~p~~~~----------~~~~~~~~~~hn~l~AHa~a~~~~r~~~~~~~~~kIG~~~~~ 248 (287)
++|+|+|||++++..||..|.. |+... ++.++.++++|||++|||+|++++|+.++..|+++||++++.
T Consensus 178 k~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~ 256 (504)
T PLN02814 178 KLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFA 256 (504)
T ss_pred CEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeC
Confidence 9999999999999999998874 65421 122468999999999999999999997544578999999999
Q ss_pred ceeeeCCCCHHHHHHHHHHHhhhccccchhhhh
Q 023097 249 EWAEANSDKIEDKSAAARRLDFQIGWYCLKYSV 281 (287)
Q Consensus 249 ~~~~P~~~~p~Dv~Aa~~~~~~~n~~flDp~~~ 281 (287)
.++||.+++|+|+.||++++++.++||+||++.
T Consensus 257 ~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~ 289 (504)
T PLN02814 257 FGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVF 289 (504)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhC
Confidence 999999999999999999999999999999874
No 6
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=2.3e-78 Score=591.20 Aligned_cols=249 Identities=35% Similarity=0.617 Sum_probs=234.3
Q ss_pred CCCCCCceehhhhcccccccccCCCCCcCceeeeeccCCCccccCCCCCcccccccCcHHHHHHHHHcCCCccccccCcC
Q 023097 22 TDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWS 101 (287)
Q Consensus 22 ~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ 101 (287)
.+||++|+||+|||||||||++++||||+|+||++++.+++ .++++||||||||+|||+|||+||+++|||||+||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWs 78 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYW----FTPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWS 78 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCC----CCCCcccchhhhhHHHHHHHHHhCCCEEEeeccHh
Confidence 35999999999999999999999999999999998875554 36889999999999999999999999999999999
Q ss_pred ccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCccEE
Q 023097 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNW 181 (287)
Q Consensus 102 ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w 181 (287)
||+|+++| .+|++||++|+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++||| |++|
T Consensus 79 RI~P~G~g-~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W 155 (469)
T PRK13511 79 RIFPDGYG-EVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYW 155 (469)
T ss_pred hcCcCCCC-CcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEE
Confidence 99999878 8999999999999999999999999999999999999986 9999999999999999999999999 9999
Q ss_pred EEecCCccccccCccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCceeeeCC-CCHHH
Q 023097 182 ITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANS-DKIED 260 (287)
Q Consensus 182 ~t~NEP~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~AHa~a~~~~r~~~~~~~~~kIG~~~~~~~~~P~~-~~p~D 260 (287)
+|||||++++..||..|.+||+... ..+..++++||+++|||+|++++|++. ++++||++++..+++|.+ ++|+|
T Consensus 156 ~T~NEP~~~~~~gy~~G~~~Pg~~~-~~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P~~~~~~~d 231 (469)
T PRK13511 156 TTFNEIGPIGDGQYLVGKFPPGIKY-DLAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYPIDPDNPED 231 (469)
T ss_pred EEccchhhhhhcchhhcccCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEeeCCCCCHHH
Confidence 9999999999999999999999642 234689999999999999999999975 589999999999999999 99999
Q ss_pred HHHHHHHHhhhccccchhhhh
Q 023097 261 KSAAARRLDFQIGWYCLKYSV 281 (287)
Q Consensus 261 v~Aa~~~~~~~n~~flDp~~~ 281 (287)
+.||++++++.|+||+||+++
T Consensus 232 ~~aa~~~~~~~~~~f~dp~~~ 252 (469)
T PRK13511 232 VRAAELEDIIHNKFILDATYL 252 (469)
T ss_pred HHHHHHHHHHhhhcccchhhC
Confidence 999999999999999999864
No 7
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=1.3e-77 Score=585.25 Aligned_cols=248 Identities=32% Similarity=0.581 Sum_probs=232.3
Q ss_pred CCCCCceehhhhcccccccccCCCCCcCceeeeeccCCCccccCCCCCcccccccCcHHHHHHHHHcCCCccccccCcCc
Q 023097 23 DFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSR 102 (287)
Q Consensus 23 ~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~r 102 (287)
+||++|+||+|||||||||+++++|||+|+||++.+.++. .++++||||||||+|||+|||+||+++|||||+|||
T Consensus 3 ~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsR 78 (467)
T TIGR01233 3 TLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSR 78 (467)
T ss_pred CCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhh
Confidence 5999999999999999999999999999999998764443 367889999999999999999999999999999999
Q ss_pred cccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCccEEE
Q 023097 103 IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWI 182 (287)
Q Consensus 103 i~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~ 182 (287)
|+|+++| .+|++|+++|+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++||+ |++|+
T Consensus 79 I~P~g~~-~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~Wi 155 (467)
T TIGR01233 79 IFPTGYG-EVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWT 155 (467)
T ss_pred ccCCCCC-CcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 9999878 8999999999999999999999999999999999999986 9999999999999999999999998 99999
Q ss_pred EecCCccccccCccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCceeeeCC-CCHHHH
Q 023097 183 TINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANS-DKIEDK 261 (287)
Q Consensus 183 t~NEP~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~AHa~a~~~~r~~~~~~~~~kIG~~~~~~~~~P~~-~~p~Dv 261 (287)
||||||+++..||..|.+||+... ..+..++++||+++|||+|++++|++. ++++||++++..++||.+ ++|+|+
T Consensus 156 T~NEP~~~~~~gy~~G~~~Pg~~~-~~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~~D~ 231 (467)
T TIGR01233 156 TFNEIGPIGDGQYLVGKFPPGIKY-DLAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYPYDPENPADV 231 (467)
T ss_pred EecchhhhhhccchhcccCCCccc-hhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEECCCCCHHHH
Confidence 999999999999999999998531 234689999999999999999999975 589999999999999998 899999
Q ss_pred HHHHHHHhhhccccchhhhh
Q 023097 262 SAAARRLDFQIGWYCLKYSV 281 (287)
Q Consensus 262 ~Aa~~~~~~~n~~flDp~~~ 281 (287)
+||++++++.|+||+||+++
T Consensus 232 ~aA~~~~~~~~~~f~d~~~~ 251 (467)
T TIGR01233 232 RAAELEDIIHNKFILDATYL 251 (467)
T ss_pred HHHHHHHHHhhhcccchhhC
Confidence 99999999999999999864
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=7.9e-77 Score=580.82 Aligned_cols=255 Identities=33% Similarity=0.552 Sum_probs=229.2
Q ss_pred CCCCCCCceehhhhcccccccccCCCCCcCceeeeeccCCCccc--c----------C--CCCCcccccccCcHHHHHHH
Q 023097 21 KTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKII--D----------K--SNGDVAVDHYHRYKEDIDLI 86 (287)
Q Consensus 21 ~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~--~----------~--~~~~~a~d~~~~~~eDi~l~ 86 (287)
..+||++|+||+|||||||||++++||||+|+||++.+.++++. . + .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 34699999999999999999999999999999999887544431 1 1 15788999999999999999
Q ss_pred HHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHH
Q 023097 87 AKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIY 166 (287)
Q Consensus 87 ~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~y 166 (287)
|+||+++|||||+||||+|++.+..+|++||++|+++|++|+++||+|+|||+|||+|+||+++||||.|++++++|++|
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 99999999999999999999743269999999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHhCCCccEEEEecCCccccccCcc-ccc-cCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEe
Q 023097 167 ADTCFASFGDRVKNWITINEPLQTAVNGYC-TGI-FAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGL 244 (287)
Q Consensus 167 a~~v~~~~~d~V~~w~t~NEP~~~~~~gy~-~g~-~~p~~~~~~~~~~~~~~hn~l~AHa~a~~~~r~~~~~~~~~kIG~ 244 (287)
|+.|+++|||+|++|+|||||++++..||. .|. +||+.. +.+..++++||+++|||+|++++|+.. |+++||+
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~--~~~~~~~a~h~~llAHa~A~~~~~~~~---~~g~VGi 237 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGEN--KEQVKYQAAHHELVASAIATKIAHEVD---PENKVGC 237 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCc--hhhhHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEE
Confidence 999999999999999999999999988886 454 367542 335689999999999999999999865 5899999
Q ss_pred eecCceeeeCCCCHHHHHHHHHHHhhhccccchhhhh
Q 023097 245 VVDCEWAEANSDKIEDKSAAARRLDFQIGWYCLKYSV 281 (287)
Q Consensus 245 ~~~~~~~~P~~~~p~Dv~Aa~~~~~~~n~~flDp~~~ 281 (287)
+++..++||.+++|+|+.||++++. .++||+||+++
T Consensus 238 ~~~~~~~~P~~~~~~D~~aa~~~~~-~~~~fld~~~~ 273 (478)
T PRK09593 238 MLAAGQYYPNTCHPEDVWAAMKEDR-ENYFFIDVQAR 273 (478)
T ss_pred EEeCCeeEeCCCCHHHHHHHHHHHH-HhhhhhhhhhC
Confidence 9999999999999999999999884 58899999864
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=2.8e-76 Score=576.67 Aligned_cols=253 Identities=34% Similarity=0.611 Sum_probs=225.6
Q ss_pred CCCCCceehhhhcccccccccCCCCCcCceeeeec---c-CCCccc----cCC--CCCcccccccCcHHHHHHHHHcCCC
Q 023097 23 DFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFT---H-TEGKII----DKS--NGDVAVDHYHRYKEDIDLIAKLGFD 92 (287)
Q Consensus 23 ~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~---~-~~~~~~----~~~--~~~~a~d~~~~~~eDi~l~~~lG~~ 92 (287)
+||++|+||+|||||||||++++||||+|+||+++ + .++++. ++. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999988 3 234332 222 5788999999999999999999999
Q ss_pred ccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHH
Q 023097 93 AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFA 172 (287)
Q Consensus 93 ~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~ 172 (287)
+|||||+|+||+|++.+..+|++||++|+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|++
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 99999999999999743268999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCccEEEEecCCcccccc-----Ccc-ccc-cCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEee
Q 023097 173 SFGDRVKNWITINEPLQTAVN-----GYC-TGI-FAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLV 245 (287)
Q Consensus 173 ~~~d~V~~w~t~NEP~~~~~~-----gy~-~g~-~~p~~~~~~~~~~~~~~hn~l~AHa~a~~~~r~~~~~~~~~kIG~~ 245 (287)
+|||+|++|+|||||++.+.. ||. .|. +||+.. .....++++||+++|||+|++++|++. |+++||++
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~--~~~~~~~~~h~~llAha~A~~~~~~~~---~~~~iG~~ 237 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED--REQIMYQAAHYELVASALAVKTGHEIN---PDFQIGCM 237 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCcEEEE
Confidence 999999999999999998766 555 444 366532 234579999999999999999999975 57899999
Q ss_pred ecCceeeeCCCCHHHHHHHHHHHhhhccccchhhhh
Q 023097 246 VDCEWAEANSDKIEDKSAAARRLDFQIGWYCLKYSV 281 (287)
Q Consensus 246 ~~~~~~~P~~~~p~Dv~Aa~~~~~~~n~~flDp~~~ 281 (287)
++..++||.+++|+|++||++++.+ +.||+||+++
T Consensus 238 ~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~ 272 (476)
T PRK09589 238 IAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVR 272 (476)
T ss_pred EeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeC
Confidence 9999999999999999999998855 6799999763
No 10
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=1.4e-75 Score=571.66 Aligned_cols=256 Identities=34% Similarity=0.598 Sum_probs=227.0
Q ss_pred CCCCCCCCceehhhhcccccccccCCCCCcCceeeeec---c-CCCcc----ccC--CCCCcccccccCcHHHHHHHHHc
Q 023097 20 SKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFT---H-TEGKI----IDK--SNGDVAVDHYHRYKEDIDLIAKL 89 (287)
Q Consensus 20 ~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~---~-~~~~~----~~~--~~~~~a~d~~~~~~eDi~l~~~l 89 (287)
++.+||++|+||+|||||||||++++||||+|+||+++ + .++++ .++ .++++||||||||+|||+|||+|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 45679999999999999999999999999999999988 3 23433 122 26788999999999999999999
Q ss_pred CCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHH
Q 023097 90 GFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADT 169 (287)
Q Consensus 90 G~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~ 169 (287)
|+++|||||+|+||+|++++..+|++||++|+++|++|+++||+|+|||+|||+|+||+++||||.++++++.|++||+.
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 99999999999999999743268999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccEEEEecCCccc-----cccCccc-ccc-CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceE
Q 023097 170 CFASFGDRVKNWITINEPLQT-----AVNGYCT-GIF-APGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNI 242 (287)
Q Consensus 170 v~~~~~d~V~~w~t~NEP~~~-----~~~gy~~-g~~-~p~~~~~~~~~~~~~~hn~l~AHa~a~~~~r~~~~~~~~~kI 242 (287)
|+++|||+|++|+||||||+. +..||.. |.+ ||+. ......++++||+++|||+|++++|++. ++++|
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~--~~~~~~~~~~h~~llAHa~A~~~~~~~~---~~~~I 236 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHE--NPEETMYQVLHHQFVASALAVKAARRIN---PEMKV 236 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeE
Confidence 999999999999999999987 6778874 665 4432 2335689999999999999999999975 58999
Q ss_pred EeeecCceeeeCCCCHHHHHHHHHHHhhhccccchhhhh
Q 023097 243 GLVVDCEWAEANSDKIEDKSAAARRLDFQIGWYCLKYSV 281 (287)
Q Consensus 243 G~~~~~~~~~P~~~~p~Dv~Aa~~~~~~~n~~flDp~~~ 281 (287)
|++++..++||.+++|+|++||++++. ...+|+||+++
T Consensus 237 Gi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~ 274 (477)
T PRK15014 237 GCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLR 274 (477)
T ss_pred EEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccC
Confidence 999999999999999999999998773 23459999864
No 11
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=7.7e-77 Score=579.42 Aligned_cols=253 Identities=54% Similarity=0.937 Sum_probs=231.3
Q ss_pred CCCCCCceehhhhcccccccccCCCCCcCceeeeeccCCCccccCCCCCcccccccCcHHHHHHHHHcCCCccccccCcC
Q 023097 22 TDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWS 101 (287)
Q Consensus 22 ~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ 101 (287)
.+||++|+||+|||||||||++++||||+|+||.|++.++++.++.+++.||||||+|+|||+|||+||+++|||||+|+
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~ 82 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWS 82 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HH
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchh
Confidence 46999999999999999999999999999999999998888888888999999999999999999999999999999999
Q ss_pred ccccCC-CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCccE
Q 023097 102 RIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKN 180 (287)
Q Consensus 102 ri~P~~-~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~ 180 (287)
||+|++ .| .+|++++++|+++|++|+++||+|+|||+|||+|+||++ +|||.|+++++.|++||+.|+++|||+|++
T Consensus 83 Ri~P~g~~g-~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~ 160 (455)
T PF00232_consen 83 RIFPDGFEG-KVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKY 160 (455)
T ss_dssp HHSTTSSSS-SS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSE
T ss_pred heeeccccc-ccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcce
Confidence 999997 78 999999999999999999999999999999999999998 799999999999999999999999999999
Q ss_pred EEEecCCccccccCccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCceeeeCCCCHHH
Q 023097 181 WITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIED 260 (287)
Q Consensus 181 w~t~NEP~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~AHa~a~~~~r~~~~~~~~~kIG~~~~~~~~~P~~~~p~D 260 (287)
|+|+|||++.+..||+.|.+||+.. +.+..++++|||++||++|++++|++. ++++||++++..+++|.+++++|
T Consensus 161 w~T~NEp~~~~~~~y~~g~~~p~~~--~~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d 235 (455)
T PF00232_consen 161 WITFNEPNVFALLGYLYGGFPPGRD--SLKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFYPLSPSPED 235 (455)
T ss_dssp EEEEETHHHHHHHHHTSSSSTTCSS--THHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEEESSSSHHH
T ss_pred EEeccccceeecccccccccccccc--ccchhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccCCCCccchh
Confidence 9999999999999999999999953 567889999999999999999999987 59999999999999999998877
Q ss_pred H-HHHHHHHhhhccccchhhhh
Q 023097 261 K-SAAARRLDFQIGWYCLKYSV 281 (287)
Q Consensus 261 v-~Aa~~~~~~~n~~flDp~~~ 281 (287)
. .||++.+++.|+||+||+++
T Consensus 236 ~~~Aa~~~~~~~n~~f~dpi~~ 257 (455)
T PF00232_consen 236 DVAAAERADEFHNGWFLDPIFK 257 (455)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccCchh
Confidence 6 88899999999999999986
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=9.2e-75 Score=565.14 Aligned_cols=253 Identities=36% Similarity=0.607 Sum_probs=229.7
Q ss_pred CCCCCceehhhhcccccccccCCCCCcCceeeeeccCCCccc------------cC--CCCCcccccccCcHHHHHHHHH
Q 023097 23 DFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKII------------DK--SNGDVAVDHYHRYKEDIDLIAK 88 (287)
Q Consensus 23 ~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~------------~~--~~~~~a~d~~~~~~eDi~l~~~ 88 (287)
+||++|+||+|||||||||++++||||+|+||++++.++++. ++ .++++||||||||+||++||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 699999999999999999999999999999999887555431 12 1568899999999999999999
Q ss_pred cCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHH
Q 023097 89 LGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYAD 168 (287)
Q Consensus 89 lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~ 168 (287)
||+++|||||+|+||+|++++..+|+++|++|+++|++|+++||+|+|||+||++|+||+++||||.++++++.|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999974326899999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHhCCCccEEEEecCCccccccCcc-ccc-cCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEeee
Q 023097 169 TCFASFGDRVKNWITINEPLQTAVNGYC-TGI-FAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVV 246 (287)
Q Consensus 169 ~v~~~~~d~V~~w~t~NEP~~~~~~gy~-~g~-~~p~~~~~~~~~~~~~~hn~l~AHa~a~~~~r~~~~~~~~~kIG~~~ 246 (287)
.|+++|||+|++|+||||||+++..||. .|. +||+.. .....++++||+++|||+|++++|++. ++++||+++
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~--~~~~~~~~~hn~llAHa~A~~~~~~~~---~~~~IGi~~ 237 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGEN--QDQVKYQAAHHELVASALATKIAHEVN---PQNQVGCML 237 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCC--chHhHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEE
Confidence 9999999999999999999999999996 564 478642 335689999999999999999999976 588999999
Q ss_pred cCceeeeCCCCHHHHHHHHHHHhhhccccchhhhh
Q 023097 247 DCEWAEANSDKIEDKSAAARRLDFQIGWYCLKYSV 281 (287)
Q Consensus 247 ~~~~~~P~~~~p~Dv~Aa~~~~~~~n~~flDp~~~ 281 (287)
+..++||.+++|+|++||++++ +.+.+|+||+++
T Consensus 238 ~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~ 271 (474)
T PRK09852 238 AGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQAR 271 (474)
T ss_pred eCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhC
Confidence 9999999999999999999887 458899999864
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=7.3e-74 Score=553.92 Aligned_cols=251 Identities=47% Similarity=0.894 Sum_probs=236.9
Q ss_pred CCCCceehhhhcccccccccCCCCCcCceeeeeccCCCccccCCCCCcccccccCcHHHHHHHHHcCCCccccccCcCcc
Q 023097 24 FPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRI 103 (287)
Q Consensus 24 fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri 103 (287)
||++|+||+||||+|+||+++++|||+|+||++.+.++++.++.++++||||||+|+|||++|+++|+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999987667665666888999999999999999999999999999999999
Q ss_pred ccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCccEEEE
Q 023097 104 FPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWIT 183 (287)
Q Consensus 104 ~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t 183 (287)
+|+++| .+|++++++|+++|++|+++||+|+|||+||++|+||.++ |||.++++++.|++||+.|+++|||+|++|+|
T Consensus 81 ~p~g~~-~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t 158 (427)
T TIGR03356 81 FPEGTG-PVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWIT 158 (427)
T ss_pred ccCCCC-CcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEE
Confidence 999768 8999999999999999999999999999999999999987 99999999999999999999999999999999
Q ss_pred ecCCccccccCccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCceeeeCCCCHHHHHH
Q 023097 184 INEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIEDKSA 263 (287)
Q Consensus 184 ~NEP~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~AHa~a~~~~r~~~~~~~~~kIG~~~~~~~~~P~~~~p~Dv~A 263 (287)
+||||+.+..||..|.+||+.. +.+..++++|||++|||+|++++|++. |+++||++++..++||.+++|+|+.|
T Consensus 159 ~NEp~~~~~~~y~~G~~~P~~~--~~~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d~~a 233 (427)
T TIGR03356 159 LNEPWCSAFLGYGLGVHAPGLR--DLRAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPVYPASDSPEDVAA 233 (427)
T ss_pred ecCcceecccchhhccCCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeCCCCHHHHHH
Confidence 9999999999999998899853 224579999999999999999999976 58999999999999999999999999
Q ss_pred HHHHHhhhccccchhhhh
Q 023097 264 AARRLDFQIGWYCLKYSV 281 (287)
Q Consensus 264 a~~~~~~~n~~flDp~~~ 281 (287)
|++++++.++||+||+++
T Consensus 234 a~~~~~~~~~~f~d~~~~ 251 (427)
T TIGR03356 234 ARRADGLLNRWFLDPLLK 251 (427)
T ss_pred HHHHHHHHhhhhhHHHhC
Confidence 999999999999999875
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.48 E-value=7.2e-14 Score=133.42 Aligned_cols=108 Identities=23% Similarity=0.448 Sum_probs=88.1
Q ss_pred cCcHHHHHHHHHcCCCcccc-ccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhc----
Q 023097 77 HRYKEDIDLIAKLGFDAYRF-SISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESM---- 151 (287)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~-si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~---- 151 (287)
..+++|+++|+++|+|++|+ .++|++|||++ | ++| ++.+|++|+.+.++||++++.+.+...|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e-G-~yd---F~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~ 84 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE-G-QYD---FSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEIL 84 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT-T-B------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC-C-eee---cHHHHHHHHHHHhccCeEEEEecccccccchhhhccccc
Confidence 45899999999999999996 58999999998 9 999 78899999999999999999999999999998653
Q ss_pred -----------CC-----CCChHHHHHHHHHHHHHHHHhCCC--ccEEEEecCCcc
Q 023097 152 -----------GG-----WLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPLQ 189 (287)
Q Consensus 152 -----------gg-----w~~~~~~~~f~~ya~~v~~~~~d~--V~~w~t~NEP~~ 189 (287)
|. ..+|...+.+.++++.+++||++. |-.|.+.|||..
T Consensus 85 ~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 85 PVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp -B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred ccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 11 125567888889999999999985 788999999976
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.46 E-value=2.2e-13 Score=123.21 Aligned_cols=110 Identities=22% Similarity=0.334 Sum_probs=91.4
Q ss_pred CcHHHHHHHHHcCCCccccccCcCccc-cCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCC-C
Q 023097 78 RYKEDIDLIAKLGFDAYRFSISWSRIF-PDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGW-L 155 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~-P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw-~ 155 (287)
..++|++.|+++|+|++|+.|.|..++ |.+.+ .++...++.++++|+.|.++||.++++||+. |.|.... ++. .
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~-~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~ 97 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY-NYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGN 97 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT-SBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc-cccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-ccccc
Confidence 578999999999999999999998888 56544 6899999999999999999999999999874 7774332 223 3
Q ss_pred ChHHHHHHHHHHHHHHHHhCC--CccEEEEecCCcccc
Q 023097 156 NKEIVKYFEIYADTCFASFGD--RVKNWITINEPLQTA 191 (287)
Q Consensus 156 ~~~~~~~f~~ya~~v~~~~~d--~V~~w~t~NEP~~~~ 191 (287)
.....+.|.++++.++++|++ .|..|.++|||+...
T Consensus 98 ~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~ 135 (281)
T PF00150_consen 98 NDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGN 135 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTT
T ss_pred chhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccC
Confidence 445678899999999999955 588999999999753
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.96 E-value=2.5e-09 Score=97.07 Aligned_cols=84 Identities=18% Similarity=0.382 Sum_probs=72.4
Q ss_pred cCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCee--EEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhC
Q 023097 98 ISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQP--YVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (287)
Q Consensus 98 i~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p--~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~ 175 (287)
+.|++++|++ | .+| ++..|.+++.|+++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||+
T Consensus 1 ~kW~~~ep~~-G-~~n---~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~ 71 (254)
T smart00633 1 MKWDSTEPSR-G-QFN---FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYK 71 (254)
T ss_pred CCcccccCCC-C-ccC---hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhC
Confidence 3699999997 9 999 678899999999999995 3446677899998742 2 55778999999999999999
Q ss_pred CCccEEEEecCCccc
Q 023097 176 DRVKNWITINEPLQT 190 (287)
Q Consensus 176 d~V~~w~t~NEP~~~ 190 (287)
++|..|.++|||...
T Consensus 72 g~i~~wdV~NE~~~~ 86 (254)
T smart00633 72 GKIYAWDVVNEALHD 86 (254)
T ss_pred CcceEEEEeeecccC
Confidence 999999999999864
No 17
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.77 E-value=1.2e-08 Score=103.46 Aligned_cols=118 Identities=22% Similarity=0.408 Sum_probs=92.5
Q ss_pred cHHHHHHHHHcCCCccccc-cCcCccccCCCCCccChhHHHHHHHH-HHHHHHCCCeeEEEe-ccCCCcHHhHhhc----
Q 023097 79 YKEDIDLIAKLGFDAYRFS-ISWSRIFPDGLGTKINMEGITFYNNI-IDALLQKGIQPYVTL-YHWDLPLHLHESM---- 151 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~s-i~W~ri~P~~~g~~~n~~~~~~y~~~-i~~l~~~GI~p~vtL-~h~~~P~wl~~~~---- 151 (287)
+.+|++.||++|+|++|.+ ++|++++|+. | ++| +.+.|.. ++.+.+.||.+++.- .....|.|+..++
T Consensus 32 w~ddl~~mk~~G~N~V~ig~faW~~~eP~e-G-~fd---f~~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL 106 (673)
T COG1874 32 WMDDLRKMKALGLNTVRIGYFAWNLHEPEE-G-KFD---FTWLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEIL 106 (673)
T ss_pred HHHHHHHHHHhCCCeeEeeeEEeeccCccc-c-ccC---cccchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhhe
Confidence 6678999999999999995 8999999997 9 999 4578888 999999999999998 7788999998764
Q ss_pred -----------CCCCChHHH-HHHHHHHHH----HHHH-hCCC--ccEEEEecCCcc-ccccCccccccC
Q 023097 152 -----------GGWLNKEIV-KYFEIYADT----CFAS-FGDR--VKNWITINEPLQ-TAVNGYCTGIFA 201 (287)
Q Consensus 152 -----------ggw~~~~~~-~~f~~ya~~----v~~~-~~d~--V~~w~t~NEP~~-~~~~gy~~g~~~ 201 (287)
++|.+-+.. ..|..|++. +.+| |++. |-.|.+-||-.. .+++.|+.+.|+
T Consensus 107 ~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~ 176 (673)
T COG1874 107 AVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFR 176 (673)
T ss_pred EecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHH
Confidence 455332222 246666666 7788 8875 777999998776 556555555444
No 18
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.48 E-value=5.8e-07 Score=87.12 Aligned_cols=109 Identities=21% Similarity=0.202 Sum_probs=81.9
Q ss_pred HHHHHHHHHcCCCccccccCcCccccCC--CCCccC-hhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhc---CC
Q 023097 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG--LGTKIN-MEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESM---GG 153 (287)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~--~g~~~n-~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~---gg 153 (287)
++|+..||+.|||++|+.|.|-.+.+.. +. .+. ...+.+.+++|+.+++.||.++++||++.-+.--.+.. +.
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p-~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~ 154 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNP-YLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSD 154 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCC-CeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCccccccc
Confidence 8999999999999999999966655542 12 233 44566999999999999999999999866222111110 11
Q ss_pred CC-ChHHHHHHHHHHHHHHHHhCCC--ccEEEEecCCcc
Q 023097 154 WL-NKEIVKYFEIYADTCFASFGDR--VKNWITINEPLQ 189 (287)
Q Consensus 154 w~-~~~~~~~f~~ya~~v~~~~~d~--V~~w~t~NEP~~ 189 (287)
+. ..+.++++.+-++.++.||++. |-...++|||+.
T Consensus 155 ~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 155 YKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred ccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 22 3467899999999999999984 555789999995
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.32 E-value=2e-06 Score=85.13 Aligned_cols=141 Identities=22% Similarity=0.323 Sum_probs=79.7
Q ss_pred cHHHHHHH-HHcCCCccccc--c--CcCcccc-CCCCC-ccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhc
Q 023097 79 YKEDIDLI-AKLGFDAYRFS--I--SWSRIFP-DGLGT-KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESM 151 (287)
Q Consensus 79 ~~eDi~l~-~~lG~~~~R~s--i--~W~ri~P-~~~g~-~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ 151 (287)
+.+.+..+ +++||+.+||- + +..-... +++|. .+| +...|+++|.++++||+|+|.|.. +|.++....
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~~ 115 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGF--MPMALASGY 115 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS-
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEe--chhhhcCCC
Confidence 45555555 59999999986 3 2332322 22231 278 789999999999999999999974 677765321
Q ss_pred ------CCCC-ChHHHHHHHHHHHHHHHHhCC-----Ccc--EEEEecCCccccccCccccccCCCCCCCCCchhHHHHH
Q 023097 152 ------GGWL-NKEIVKYFEIYADTCFASFGD-----RVK--NWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAH 217 (287)
Q Consensus 152 ------ggw~-~~~~~~~f~~ya~~v~~~~~d-----~V~--~w~t~NEP~~~~~~gy~~g~~~p~~~~~~~~~~~~~~h 217 (287)
.|+. .|...+.|.++++.+++|+.+ .|. +|++||||+...+ +..+ ...+ | .
T Consensus 116 ~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f-------~~~~----~~~e-y---~ 180 (486)
T PF01229_consen 116 QTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDF-------WWDG----TPEE-Y---F 180 (486)
T ss_dssp -EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTT-------SGGG-----HHH-H---H
T ss_pred CccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccc-------cCCC----CHHH-H---H
Confidence 2222 345678888887776665543 355 5689999998432 1111 1111 2 1
Q ss_pred HHHHHHHHHHHHHHHhccCCCCceEEee
Q 023097 218 HQILAHAAAFSVYQRKYKDKQGGNIGLV 245 (287)
Q Consensus 218 n~l~AHa~a~~~~r~~~~~~~~~kIG~~ 245 (287)
.+ ...+++++|+.. |..|||--
T Consensus 181 ~l---y~~~~~~iK~~~---p~~~vGGp 202 (486)
T PF01229_consen 181 EL---YDATARAIKAVD---PELKVGGP 202 (486)
T ss_dssp HH---HHHHHHHHHHH----TTSEEEEE
T ss_pred HH---HHHHHHHHHHhC---CCCcccCc
Confidence 22 344566677765 58899854
No 20
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.17 E-value=1.1e-05 Score=75.82 Aligned_cols=125 Identities=22% Similarity=0.329 Sum_probs=87.5
Q ss_pred CCCCceehhhhcccccccccCCCCCcCceeeeeccCCCccccCCCCCcccccccCcHHHHHHHHHcCCCccccccCcCcc
Q 023097 24 FPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRI 103 (287)
Q Consensus 24 fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri 103 (287)
...+|.+|+|.++.++++.. . |++ -+.+....=+..-.+.|..+
T Consensus 6 ~~~~f~~G~av~~~~~~~~~-----------~-----------------------~~~--~~~~~Fn~~t~eN~~Kw~~~ 49 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP-----------R-----------------------YRE--LFAKHFNSVTPENEMKWGSI 49 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH-----------H-----------------------HHH--HHHHH-SEEEESSTTSHHHH
T ss_pred HhccCCEEEEechhHcCCcH-----------H-----------------------HHH--HHHHhCCeeeeccccchhhh
Confidence 45788999999998888841 0 000 01122222233345889999
Q ss_pred ccCCCCCccChhHHHHHHHHHHHHHHCCCeeEE--EeccCCCcHHhHhhcCCCCChH---HHHHHHHHHHHHHHHhC--C
Q 023097 104 FPDGLGTKINMEGITFYNNIIDALLQKGIQPYV--TLYHWDLPLHLHESMGGWLNKE---IVKYFEIYADTCFASFG--D 176 (287)
Q Consensus 104 ~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~v--tL~h~~~P~wl~~~~ggw~~~~---~~~~f~~ya~~v~~~~~--d 176 (287)
+|.+ | .+| ++..|++++-|+++||++-. .+.|--.|.|+... ..+...+ ..+...+|.+.+++||+ .
T Consensus 50 e~~~-g-~~~---~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g 123 (320)
T PF00331_consen 50 EPEP-G-RFN---FESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDKG 123 (320)
T ss_dssp ESBT-T-BEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred cCCC-C-ccC---ccchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhcccc
Confidence 9997 9 999 67799999999999999873 34466789999763 1233333 78889999999999999 4
Q ss_pred CccEEEEecCCccc
Q 023097 177 RVKNWITINEPLQT 190 (287)
Q Consensus 177 ~V~~w~t~NEP~~~ 190 (287)
+|..|-++|||-..
T Consensus 124 ~i~~WDVvNE~i~~ 137 (320)
T PF00331_consen 124 RIYAWDVVNEAIDD 137 (320)
T ss_dssp TESEEEEEES-B-T
T ss_pred ceEEEEEeeecccC
Confidence 89999999999764
No 21
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.03 E-value=1.8e-05 Score=74.39 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=77.2
Q ss_pred CcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec--------cCCCcHHhHh
Q 023097 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY--------HWDLPLHLHE 149 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~--------h~~~P~wl~~ 149 (287)
.|++-++.||++|+|++-+-+.|..-||.+ | ++|.++..=.+++|+.|+++||.+++-.- ..++|.||..
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~-g-~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~ 102 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE-G-QFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLR 102 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT-T-B---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGG
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC-C-cccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhc
Confidence 477889999999999999999999999997 9 99999988899999999999999877532 2458999987
Q ss_pred hcCCC---CChHHHHHHHHHHHHHHHHhCC-------CccEEEEecCCc
Q 023097 150 SMGGW---LNKEIVKYFEIYADTCFASFGD-------RVKNWITINEPL 188 (287)
Q Consensus 150 ~~ggw---~~~~~~~~f~~ya~~v~~~~~d-------~V~~w~t~NEP~ 188 (287)
+.+.. .++...++-.+|.+.+++...+ -|-..++=||..
T Consensus 103 ~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 103 KPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp STTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 63332 2556677777777777776654 366688888876
No 22
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.72 E-value=0.001 Score=62.91 Aligned_cols=141 Identities=13% Similarity=0.167 Sum_probs=87.9
Q ss_pred HHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHh----hcCCCC
Q 023097 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE----SMGGWL 155 (287)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~----~~ggw~ 155 (287)
++=+++||+.|+|++|+-+ | +.|...| ..| ++.-..+..+++++||+++|++|--| .|... +...|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g-~~~---~~~~~~~akrak~~Gm~vlldfHYSD--~WaDPg~Q~~P~aW~ 97 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGG-YND---LEDVIALAKRAKAAGMKVLLDFHYSD--FWADPGKQNKPAAWA 97 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTT-TTS---HHHHHHHHHHHHHTT-EEEEEE-SSS--S--BTTB-B--TTCT
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccc-cCC---HHHHHHHHHHHHHCCCeEEEeecccC--CCCCCCCCCCCccCC
Confidence 3458999999999999987 3 4555325 556 78899999999999999999987322 23221 124687
Q ss_pred C---hHHHHHHHHHHHHHHHHhCC---CccEEEEecCCccccccCccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 023097 156 N---KEIVKYFEIYADTCFASFGD---RVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSV 229 (287)
Q Consensus 156 ~---~~~~~~f~~ya~~v~~~~~d---~V~~w~t~NEP~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~AHa~a~~~ 229 (287)
+ .+..+.-.+|.+.+.+.+++ .++.+++=||.+.-.+ +|.+.. .-+.-+-.++.|-.+|+
T Consensus 98 ~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~-----~~~~~~a~ll~ag~~AV-- 163 (332)
T PF07745_consen 98 NLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKP-----SNWDNLAKLLNAGIKAV-- 163 (332)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCT-----T-HHHHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCc-----cCHHHHHHHHHHHHHHH--
Confidence 6 56778888888888887754 5888999999986433 333321 12333444555555554
Q ss_pred HHHhccCCCCceEEeeec
Q 023097 230 YQRKYKDKQGGNIGLVVD 247 (287)
Q Consensus 230 ~r~~~~~~~~~kIG~~~~ 247 (287)
|+.. |+.||.+.+.
T Consensus 164 -r~~~---p~~kV~lH~~ 177 (332)
T PF07745_consen 164 -REVD---PNIKVMLHLA 177 (332)
T ss_dssp -HTHS---STSEEEEEES
T ss_pred -HhcC---CCCcEEEEEC
Confidence 4444 4777766544
No 23
>PLN03059 beta-galactosidase; Provisional
Probab=97.43 E-value=0.0009 Score=69.71 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=90.2
Q ss_pred ccccccC-----cHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec-------
Q 023097 72 AVDHYHR-----YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY------- 139 (287)
Q Consensus 72 a~d~~~~-----~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~------- 139 (287)
+.-||-| |++-++.||++|+|++-.=+.|..-||++ | ++|.+|..=..++|+.+.+.||-+++-.-
T Consensus 49 G~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~-G-~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw 126 (840)
T PLN03059 49 GSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP-G-NYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEW 126 (840)
T ss_pred eCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCC-C-eeeccchHHHHHHHHHHHHcCCEEEecCCcceeeee
Confidence 4567754 67779999999999999999999999997 9 99999999999999999999998887643
Q ss_pred -cCCCcHHhHhhcCCC----CChHHHHHHHHHHHHHHHHhC---------CCccEEEEecCCc
Q 023097 140 -HWDLPLHLHESMGGW----LNKEIVKYFEIYADTCFASFG---------DRVKNWITINEPL 188 (287)
Q Consensus 140 -h~~~P~wl~~~~ggw----~~~~~~~~f~~ya~~v~~~~~---------d~V~~w~t~NEP~ 188 (287)
..++|.||... .|- .++.+.++-.+|.+.+++..+ +-|-..++=||-.
T Consensus 127 ~~GGlP~WL~~~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYG 188 (840)
T PLN03059 127 NFGGFPVWLKYV-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYG 188 (840)
T ss_pred cCCCCchhhhcC-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccc
Confidence 45789999754 342 256677777778888777773 2355667778854
No 24
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.00069 Score=63.16 Aligned_cols=86 Identities=19% Similarity=0.348 Sum_probs=71.6
Q ss_pred ccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEE--eccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 023097 97 SISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT--LYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASF 174 (287)
Q Consensus 97 si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vt--L~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~ 174 (287)
-+-|.-|+|+. | .+| ++.-|.+++-++++||..--- +.|--.|.|+.. ..+..+...+...++...|+.||
T Consensus 66 emKwe~i~p~~-G-~f~---Fe~AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 66 EMKWEAIEPER-G-RFN---FEAADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred ccccccccCCC-C-ccC---ccchHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 46799999986 9 999 566899999999999985332 235567999864 23677889999999999999999
Q ss_pred CCCccEEEEecCCcc
Q 023097 175 GDRVKNWITINEPLQ 189 (287)
Q Consensus 175 ~d~V~~w~t~NEP~~ 189 (287)
++.|..|-+.|||--
T Consensus 139 kg~~~sWDVVNE~vd 153 (345)
T COG3693 139 KGSVASWDVVNEAVD 153 (345)
T ss_pred cCceeEEEecccccC
Confidence 999999999999975
No 25
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.28 E-value=0.00038 Score=66.86 Aligned_cols=99 Identities=15% Similarity=0.337 Sum_probs=75.2
Q ss_pred ccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec-c-----------CCC
Q 023097 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WDL 143 (287)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~-h-----------~~~ 143 (287)
+...+.+++.||++|++.+-+.+=|.-+|+.+++ ++| |+.|+++++.+++.|++..+.|. | ..+
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~-~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpL 90 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQ-QYD---WSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPL 90 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTT-B------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCC-ccC---cHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcC
Confidence 3468899999999999999999999999999778 999 67799999999999999888763 3 468
Q ss_pred cHHhHhh-----------cCC--------CCChHHHHHHHHHHHHHHHHhCCCc
Q 023097 144 PLHLHES-----------MGG--------WLNKEIVKYFEIYADTCFASFGDRV 178 (287)
Q Consensus 144 P~wl~~~-----------~gg--------w~~~~~~~~f~~ya~~v~~~~~d~V 178 (287)
|.|+.+. .|. |....+++.|.+|-+.+.++|.+..
T Consensus 91 P~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~ 144 (402)
T PF01373_consen 91 PSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL 144 (402)
T ss_dssp -HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH
T ss_pred CHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9998753 121 3333448999999999888887643
No 26
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=97.21 E-value=0.00065 Score=65.01 Aligned_cols=99 Identities=20% Similarity=0.369 Sum_probs=55.3
Q ss_pred HcCCCcccccc---C------------cCcc--ccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhh
Q 023097 88 KLGFDAYRFSI---S------------WSRI--FPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHES 150 (287)
Q Consensus 88 ~lG~~~~R~si---~------------W~ri--~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~ 150 (287)
.+|++.+|+.| + |.|. ++..+| .+|+.+=+-=+.++++++++|+..++. +-...|.|+...
T Consensus 58 GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg-~yDW~~D~gQrwfL~~Ak~rGV~~f~a-FSNSPP~~MT~N 135 (384)
T PF14587_consen 58 GLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADG-SYDWDADAGQRWFLKAAKERGVNIFEA-FSNSPPWWMTKN 135 (384)
T ss_dssp S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS--B-TTSSHHHHHHHHHHHHTT---EEE-E-SSS-GGGSSS
T ss_pred CceeeeeeeccccCCcccccCccCCCcccCCccccCCCC-CcCCCCCHHHHHHHHHHHHcCCCeEEE-eecCCCHHHhcC
Confidence 48888888765 2 4443 233346 788754444556899999999999885 446667776542
Q ss_pred cC----C-----CCChHHHHHHHHHHHHHHHHhCC---CccEEEEecCCcc
Q 023097 151 MG----G-----WLNKEIVKYFEIYADTCFASFGD---RVKNWITINEPLQ 189 (287)
Q Consensus 151 ~g----g-----w~~~~~~~~f~~ya~~v~~~~~d---~V~~w~t~NEP~~ 189 (287)
| + =+.++..+.|++|-..|+++|.. .+++-.++|||+.
T Consensus 136 -G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 136 -GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp -SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred -CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 2 1 14567889999999999999943 5888999999984
No 27
>PLN02161 beta-amylase
Probab=97.14 E-value=0.0012 Score=64.93 Aligned_cols=102 Identities=16% Similarity=0.312 Sum_probs=79.5
Q ss_pred cccccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec-cC----------
Q 023097 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-HW---------- 141 (287)
Q Consensus 73 ~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~-h~---------- 141 (287)
..+....+..++.+|.+|++.+-+.+=|--+|+++++ +|| |..|+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~-~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~ 188 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPL-EFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGG 188 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCC-cCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccC
Confidence 4556667889999999999999999999999998878 999 57799999999999999877765 42
Q ss_pred -CCcHHhHhh--------c---CCCCC----------------hHHHHHHHHHHHHHHHHhCCCc
Q 023097 142 -DLPLHLHES--------M---GGWLN----------------KEIVKYFEIYADTCFASFGDRV 178 (287)
Q Consensus 142 -~~P~wl~~~--------~---ggw~~----------------~~~~~~f~~ya~~v~~~~~d~V 178 (287)
.+|.|+.+. | .|..| +.-++.|.+|-+-+.+.|.+..
T Consensus 189 IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~ 253 (531)
T PLN02161 189 ISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYI 253 (531)
T ss_pred ccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 489998752 0 12111 2235788888888877777654
No 28
>PLN02803 beta-amylase
Probab=97.14 E-value=0.0011 Score=65.44 Aligned_cols=98 Identities=17% Similarity=0.297 Sum_probs=76.4
Q ss_pred cCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec-c-----------CCCc
Q 023097 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WDLP 144 (287)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~-h-----------~~~P 144 (287)
.-.+..++.+|.+|++.+-+.+=|--+|+++++ +|| |..|+++++.+++.|++..+.|. | ..+|
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~-~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 182 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPM-KYN---WEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLP 182 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCC-cCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 447789999999999999999999999998778 999 57799999999999999877765 3 2599
Q ss_pred HHhHhh--------c---CCCC----------------ChHHHHHHHHHHHHHHHHhCCCc
Q 023097 145 LHLHES--------M---GGWL----------------NKEIVKYFEIYADTCFASFGDRV 178 (287)
Q Consensus 145 ~wl~~~--------~---ggw~----------------~~~~~~~f~~ya~~v~~~~~d~V 178 (287)
.|+.+. | .|.. .+.-++.|.+|-+-+.+.|.+..
T Consensus 183 ~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 243 (548)
T PLN02803 183 PWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYL 243 (548)
T ss_pred HHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 998762 0 1211 12235778888888777776644
No 29
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.11 E-value=0.0026 Score=59.07 Aligned_cols=102 Identities=21% Similarity=0.318 Sum_probs=62.8
Q ss_pred HHHHHHHHcCCCcccccc--CcCcc--------cc--CCC-C----CccChhHHHHHHHHHHHHHHCCCeeEEEeccCCC
Q 023097 81 EDIDLIAKLGFDAYRFSI--SWSRI--------FP--DGL-G----TKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL 143 (287)
Q Consensus 81 eDi~l~~~lG~~~~R~si--~W~ri--------~P--~~~-g----~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~ 143 (287)
.-++..++-|||.+|+.+ .|... .| ..+ + +.+|++.+++.+++|+.|.++||.+.+.+.| +.
T Consensus 34 ~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g~ 112 (289)
T PF13204_consen 34 QYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-GC 112 (289)
T ss_dssp HHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--HH
T ss_pred HHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-CC
Confidence 347788999999999985 34443 11 110 1 1389999999999999999999999887665 11
Q ss_pred cHHhHhhcCCCCC---hHHHHHHHHHHHHHHHHhCCC-ccEEEEecCC
Q 023097 144 PLHLHESMGGWLN---KEIVKYFEIYADTCFASFGDR-VKNWITINEP 187 (287)
Q Consensus 144 P~wl~~~~ggw~~---~~~~~~f~~ya~~v~~~~~d~-V~~w~t~NEP 187 (287)
|- .+ +.|.. .-..+.-.+|.+.|++||+.. =..|++-||-
T Consensus 113 ~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 113 PY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred cc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 21 11 44532 223667788999999999998 4779999997
No 30
>PLN00197 beta-amylase; Provisional
Probab=97.10 E-value=0.0012 Score=65.36 Aligned_cols=98 Identities=16% Similarity=0.279 Sum_probs=76.8
Q ss_pred cCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec-c-----------CCCc
Q 023097 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WDLP 144 (287)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~-h-----------~~~P 144 (287)
.-.+..++.+|.+|++.+-+.+=|--+|+++++ +|| |..|+++++.+++.|++..+.|. | ..+|
T Consensus 127 ~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~-~Yd---WsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP 202 (573)
T PLN00197 127 KAMKASLQALKSAGVEGIMMDVWWGLVERESPG-VYN---WGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLP 202 (573)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCC-cCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 347889999999999999999999999998878 999 57799999999999999887765 3 2599
Q ss_pred HHhHhh--------c---CCCCCh----------------HHHHHHHHHHHHHHHHhCCCc
Q 023097 145 LHLHES--------M---GGWLNK----------------EIVKYFEIYADTCFASFGDRV 178 (287)
Q Consensus 145 ~wl~~~--------~---ggw~~~----------------~~~~~f~~ya~~v~~~~~d~V 178 (287)
.|+.+. | .|..|+ .-++.|.+|-+-+...|.+..
T Consensus 203 ~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l 263 (573)
T PLN00197 203 KWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLL 263 (573)
T ss_pred HHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 998762 0 121111 226788888888877776643
No 31
>PLN02801 beta-amylase
Probab=96.98 E-value=0.0028 Score=62.36 Aligned_cols=100 Identities=12% Similarity=0.281 Sum_probs=77.8
Q ss_pred cccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec-c-----------CC
Q 023097 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WD 142 (287)
Q Consensus 75 ~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~-h-----------~~ 142 (287)
+-...+..+..+|.+|++.+-+.+=|--+|..+++ ++| |+.|+++++.+++.|++..+.|. | ..
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~-~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~Ip 110 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPK-QYD---WSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIP 110 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCC-ccC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 33447889999999999999999999999998778 999 57799999999999999877765 3 35
Q ss_pred CcHHhHhh--------c---CCCC----------------ChHHHHHHHHHHHHHHHHhCCCc
Q 023097 143 LPLHLHES--------M---GGWL----------------NKEIVKYFEIYADTCFASFGDRV 178 (287)
Q Consensus 143 ~P~wl~~~--------~---ggw~----------------~~~~~~~f~~ya~~v~~~~~d~V 178 (287)
+|.|+.+. | .|.. .+.-++.|.+|-+-+.++|.+..
T Consensus 111 LP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 111 IPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred CCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 89998762 0 1211 12236888888888888877644
No 32
>PLN02905 beta-amylase
Probab=96.92 E-value=0.0025 Score=63.96 Aligned_cols=100 Identities=13% Similarity=0.229 Sum_probs=77.0
Q ss_pred ccccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec-c-----------C
Q 023097 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------W 141 (287)
Q Consensus 74 d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~-h-----------~ 141 (287)
.+..-.+..+..+|.+|++.+-+.+=|--+|+.+++ +|| |..|+++++.+++.|++..+.|. | .
T Consensus 283 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~-~Yd---WsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 358 (702)
T PLN02905 283 ADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQ-EYN---WNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCI 358 (702)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCC-cCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 445567889999999999999999999999998878 999 57799999999999999877765 3 2
Q ss_pred CCcHHhHhh--------c---CCCCC----------------hHHHHHHHHHHHHHHHHhCCC
Q 023097 142 DLPLHLHES--------M---GGWLN----------------KEIVKYFEIYADTCFASFGDR 177 (287)
Q Consensus 142 ~~P~wl~~~--------~---ggw~~----------------~~~~~~f~~ya~~v~~~~~d~ 177 (287)
.+|.|+.+. | .|..| +.-++.|.+|-+-+.+.|.+.
T Consensus 359 PLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 599998762 0 12111 223577777777777666553
No 33
>PLN02705 beta-amylase
Probab=96.78 E-value=0.0041 Score=62.35 Aligned_cols=98 Identities=14% Similarity=0.192 Sum_probs=75.7
Q ss_pred ccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec-c-----------CCC
Q 023097 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WDL 143 (287)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~-h-----------~~~ 143 (287)
-.-.+..++.||.+|++.+-+.+=|--+|.++++ +|| |..|+++++.+++.|++..+.|. | ..+
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~-~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 342 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQ-KYV---WSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISL 342 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCC-cCC---cHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccC
Confidence 3457788999999999999999999999998778 999 57799999999999999777765 3 259
Q ss_pred cHHhHhh--------c---CCCCC----------------hHHHHHHHHHHHHHHHHhCCC
Q 023097 144 PLHLHES--------M---GGWLN----------------KEIVKYFEIYADTCFASFGDR 177 (287)
Q Consensus 144 P~wl~~~--------~---ggw~~----------------~~~~~~f~~ya~~v~~~~~d~ 177 (287)
|.|+.+. | .|..| +.-++.|.+|.+-+.+.|.+.
T Consensus 343 P~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 343 PQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred CHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9998762 0 12111 223477888887777777653
No 34
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.67 E-value=0.011 Score=54.75 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=62.4
Q ss_pred ccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcC---
Q 023097 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMG--- 152 (287)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~g--- 152 (287)
...++.|+.+||++|+|++|++. .|. + .++++.|-+.||-++.-+.....-.|-. .+
T Consensus 35 ~~~~~~d~~l~k~~G~N~iR~~h-----~p~------~-------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~~~ 94 (298)
T PF02836_consen 35 DEAMERDLELMKEMGFNAIRTHH-----YPP------S-------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGNCN 94 (298)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETT-----S--------S-------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSCTS
T ss_pred HHHHHHHHHHHHhcCcceEEccc-----ccC------c-------HHHHHHHhhcCCEEEEeccccccCcccc--CCccc
Confidence 46788999999999999999843 121 1 3456778889999988764321111110 01
Q ss_pred -CCCChHHHHHHHHHHHHHHHHhCCC--ccEEEEecCCc
Q 023097 153 -GWLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPL 188 (287)
Q Consensus 153 -gw~~~~~~~~f~~ya~~v~~~~~d~--V~~w~t~NEP~ 188 (287)
--.+++..+.+.+-++.+++++.++ |-.|.+.||+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~~ 133 (298)
T PF02836_consen 95 YDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNESD 133 (298)
T ss_dssp CTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESSH
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccCc
Confidence 0135678888888899999999986 88899999984
No 35
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.19 E-value=0.019 Score=58.51 Aligned_cols=93 Identities=20% Similarity=0.216 Sum_probs=65.2
Q ss_pred CcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHh-------h
Q 023097 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE-------S 150 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~-------~ 150 (287)
.+..|+++||++|+|++|++- .|. + ..+++.|-+.||-++.-+.-+....|... .
T Consensus 314 ~~~~d~~l~K~~G~N~vR~sh-----~p~------~-------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~ 375 (604)
T PRK10150 314 LNVHDHNLMKWIGANSFRTSH-----YPY------S-------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKP 375 (604)
T ss_pred HHHHHHHHHHHCCCCEEEecc-----CCC------C-------HHHHHHHHhcCcEEEEecccccccccccccccccccc
Confidence 467899999999999999952 232 2 35678888999988876543222222210 0
Q ss_pred cCCCC----ChHHHHHHHHHHHHHHHHhCCC--ccEEEEecCCc
Q 023097 151 MGGWL----NKEIVKYFEIYADTCFASFGDR--VKNWITINEPL 188 (287)
Q Consensus 151 ~ggw~----~~~~~~~f~~ya~~v~~~~~d~--V~~w~t~NEP~ 188 (287)
...|. +++..+.+.+-++.+++|++++ |-.|.+-||+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 376 KETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred cccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCC
Confidence 01222 3567788889999999999987 77899999974
No 36
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.13 E-value=0.036 Score=47.36 Aligned_cols=103 Identities=19% Similarity=0.347 Sum_probs=66.6
Q ss_pred cCcHHHHHHHHHcCCCccccccCcCccc-----cCC--CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHh
Q 023097 77 HRYKEDIDLIAKLGFDAYRFSISWSRIF-----PDG--LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE 149 (287)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~-----P~~--~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~ 149 (287)
.+|+++++.|+++|++++=+ .|+... |.. ++ .+.....+.++.+++++.+.||++++.|+. -|.|...
T Consensus 20 ~~W~~~~~~m~~~GidtlIl--q~~~~~~~~~yps~~~~~-~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~ 94 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLIL--QWTGYGGFAFYPSKLSPG-GFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ 94 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEE--EEeecCCcccCCccccCc-cccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc
Confidence 35999999999999998732 243332 221 01 122234578999999999999999999974 4566552
Q ss_pred hcCCCCChH-HHHHHHHHHHHHHHHhCCC--ccEEEEecCCcc
Q 023097 150 SMGGWLNKE-IVKYFEIYADTCFASFGDR--VKNWITINEPLQ 189 (287)
Q Consensus 150 ~~ggw~~~~-~~~~f~~ya~~v~~~~~d~--V~~w~t~NEP~~ 189 (287)
.+.+ -++.=..-++.+.++||.+ +..|=+=.|+.-
T Consensus 95 -----~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~ 132 (166)
T PF14488_consen 95 -----GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDD 132 (166)
T ss_pred -----cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCC
Confidence 1111 2333344677788899875 455666666543
No 37
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.05 E-value=0.038 Score=55.98 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=84.5
Q ss_pred CcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEe--------ccCCCcHHhHh
Q 023097 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL--------YHWDLPLHLHE 149 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL--------~h~~~P~wl~~ 149 (287)
.|++=++.+|++|+|++-.=+-|.--||.+ | ++|.+|.-=.-++|..+.+.|+-+++-+ .+-++|.||..
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~-g-~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~ 127 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP-G-KYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRN 127 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC-C-cccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhh
Confidence 477779999999999999999999999997 9 8999887777888999999998766543 36678988876
Q ss_pred hcCCC----CChHHHHHHHHHHHHHHHHhC-------CCccEEEEecCCc
Q 023097 150 SMGGW----LNKEIVKYFEIYADTCFASFG-------DRVKNWITINEPL 188 (287)
Q Consensus 150 ~~ggw----~~~~~~~~f~~ya~~v~~~~~-------d~V~~w~t~NEP~ 188 (287)
. .|- .|+.+..+..+|.+.++...+ +=|-.-++=||-.
T Consensus 128 ~-pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 128 V-PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred C-CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 5 342 377788999999999888443 2244456667644
No 38
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=94.39 E-value=0.14 Score=55.43 Aligned_cols=90 Identities=16% Similarity=0.102 Sum_probs=63.1
Q ss_pred ccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec---cCCCcHHhHhhcC
Q 023097 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY---HWDLPLHLHESMG 152 (287)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~---h~~~P~wl~~~~g 152 (287)
...++.||++||++|+|++|+| -.|. + ..+.+.|=+.||-++--.. |.-.|. . .
T Consensus 370 ~e~~~~di~lmK~~g~NaVR~s-----HyP~------~-------p~fydlcDe~GilV~dE~~~e~hg~~~~---~--~ 426 (1027)
T PRK09525 370 EETMVQDILLMKQHNFNAVRCS-----HYPN------H-------PLWYELCDRYGLYVVDEANIETHGMVPM---N--R 426 (1027)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCC------C-------HHHHHHHHHcCCEEEEecCccccCCccc---c--C
Confidence 3567889999999999999995 2332 1 2345778899998887652 211110 0 0
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCC--ccEEEEecCCc
Q 023097 153 GWLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPL 188 (287)
Q Consensus 153 gw~~~~~~~~f~~ya~~v~~~~~d~--V~~w~t~NEP~ 188 (287)
...+++..+.+.+=++.+++|.+++ |-.|.+-||+.
T Consensus 427 ~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 427 LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 1124566777777788999999987 78899999974
No 39
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=92.82 E-value=0.46 Score=51.55 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=61.8
Q ss_pred ccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCC--
Q 023097 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGG-- 153 (287)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~gg-- 153 (287)
...++.|+++||++|+|++|++. .|.. ..+.+.|-+.||-++--..- ..+.|-. .+.
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~sH-----yP~~-------------~~fydlcDe~GllV~dE~~~-e~~g~~~--~~~~~ 412 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTAH-----YPND-------------PRFYELCDIYGLFVMAETDV-ESHGFAN--VGDIS 412 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEecC-----CCCC-------------HHHHHHHHHCCCEEEECCcc-cccCccc--ccccc
Confidence 45688999999999999999862 3432 24567888999987775420 0010100 011
Q ss_pred C--CChHHHHHHHHHHHHHHHHhCCC--ccEEEEecCC
Q 023097 154 W--LNKEIVKYFEIYADTCFASFGDR--VKNWITINEP 187 (287)
Q Consensus 154 w--~~~~~~~~f~~ya~~v~~~~~d~--V~~w~t~NEP 187 (287)
+ ..+...+.|.+=++.+++|.+++ |-.|.+-||.
T Consensus 413 ~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 413 RITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 1 23445567777788999999987 7789999996
No 40
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=92.64 E-value=0.94 Score=42.33 Aligned_cols=93 Identities=18% Similarity=0.349 Sum_probs=61.5
Q ss_pred ccCcHHHHHHHHHcCCCccccc-cCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhh-cCC
Q 023097 76 YHRYKEDIDLIAKLGFDAYRFS-ISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHES-MGG 153 (287)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~s-i~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~-~gg 153 (287)
..||.+-.+++++.|+|.+=+. +.=.. - .+..+.++.+.++-+.++.+||++.+++. |..|.-+..- ...
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~------~-~Lt~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~lggL~TaD 127 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANP------K-LLTPEYLDKVARLADVFRPYGIKVYLSVN-FASPIELGGLPTAD 127 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--C------G-GGSTTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHTTS-S---
T ss_pred hhHHHHHHHHHhhcCCceEEecccccCh------h-hcCHHHHHHHHHHHHHHhhcCCEEEEEee-ccCCcccCCcCcCC
Confidence 4578888999999999987654 22111 1 22333478889999999999999999987 7888754210 012
Q ss_pred CCChHHHHHHHHHHHHHHHHhCC
Q 023097 154 WLNKEIVKYFEIYADTCFASFGD 176 (287)
Q Consensus 154 w~~~~~~~~f~~ya~~v~~~~~d 176 (287)
-+++++...|.+=++.+.++.-|
T Consensus 128 Pld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 128 PLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CCCHHHHHHHHHHHHHHHHhCCC
Confidence 45788999999999999888754
No 41
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=92.01 E-value=0.28 Score=47.39 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=70.6
Q ss_pred HHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCC--ChHHHHHH
Q 023097 86 IAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWL--NKEIVKYF 163 (287)
Q Consensus 86 ~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~--~~~~~~~f 163 (287)
-+|+||+.+|.---|.-++... -++ +.++|++++.+...|+.-+.+-.|+..+.-....+.+-. .....+.+
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~~---~~~---~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~ 87 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQKL---FYP---FTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLI 87 (428)
T ss_pred hhhhceeeehhcceeeeeeccc---cCC---hHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHH
Confidence 3789999999988888444343 456 688999999999999554545455555543333232322 22478999
Q ss_pred HHHHHHHHHHhCCC-ccE--EEEecCCcccc
Q 023097 164 EIYADTCFASFGDR-VKN--WITINEPLQTA 191 (287)
Q Consensus 164 ~~ya~~v~~~~~d~-V~~--w~t~NEP~~~~ 191 (287)
+.|++.|+.+||-+ |.- ...+||||..+
T Consensus 88 ~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~a 118 (428)
T COG3664 88 AAFLKHVIRRVGVEFVRKWPFYSPNEPNLLA 118 (428)
T ss_pred HHHHHHHHHHhChhheeecceeecCCCCccc
Confidence 99999999999964 433 56999999764
No 42
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=91.13 E-value=6.4 Score=36.96 Aligned_cols=143 Identities=13% Similarity=0.203 Sum_probs=81.0
Q ss_pred HHHHHHHHcCCCccccccCcCccccCC-CCC----ccChhHHHHHHHHHHHHHHCCCeeEEEec---cCCCcHHhHhhcC
Q 023097 81 EDIDLIAKLGFDAYRFSISWSRIFPDG-LGT----KINMEGITFYNNIIDALLQKGIQPYVTLY---HWDLPLHLHESMG 152 (287)
Q Consensus 81 eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~----~~n~~~~~~y~~~i~~l~~~GI~p~vtL~---h~~~P~wl~~~~g 152 (287)
+-++.+|..|+|.+|+-| |- -|.. +|+ -.|. ++.--.+-.++++.||+++++.| ||.=|.. +.+..
T Consensus 67 D~~~iLK~~GvNyvRlRv-wn--dP~dsngn~yggGnnD--~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPak-Q~kPk 140 (403)
T COG3867 67 DALQILKNHGVNYVRLRV-WN--DPYDSNGNGYGGGNND--LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAK-QKKPK 140 (403)
T ss_pred HHHHHHHHcCcCeEEEEE-ec--CCccCCCCccCCCcch--HHHHHHHHHHHHhcCcEEEeeccchhhccChhh-cCCcH
Confidence 347999999999999976 22 2221 121 2332 56667788889999999999976 2333432 11123
Q ss_pred CCCCh---HHHHHHHHHHHHHHHHhCC---CccEEEEecCCccccccCccccccCCCCCCCCCchhHHHHHHHHHHHHHH
Q 023097 153 GWLNK---EIVKYFEIYADTCFASFGD---RVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAA 226 (287)
Q Consensus 153 gw~~~---~~~~~f~~ya~~v~~~~~d---~V~~w~t~NEP~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~AHa~a 226 (287)
.|.+- ....+--+|.+.+.+++.+ ....-++=||-|-. ++ ||-+... -+.-+-.++.+ +
T Consensus 141 aW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~g----fl---wp~Ge~~-----~f~k~a~L~n~---g 205 (403)
T COG3867 141 AWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGG----FL---WPDGEGR-----NFDKMAALLNA---G 205 (403)
T ss_pred HhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCc----ee---ccCCCCc-----ChHHHHHHHHH---H
Confidence 46533 2234455666666666554 46667789998742 22 5544432 12223334444 4
Q ss_pred HHHHHHhccCCCCceEEeeec
Q 023097 227 FSVYQRKYKDKQGGNIGLVVD 247 (287)
Q Consensus 227 ~~~~r~~~~~~~~~kIG~~~~ 247 (287)
++++|+.. |..||-+.++
T Consensus 206 ~~avrev~---p~ikv~lHla 223 (403)
T COG3867 206 IRAVREVS---PTIKVALHLA 223 (403)
T ss_pred hhhhhhcC---CCceEEEEec
Confidence 44555543 4566655443
No 43
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=90.70 E-value=1 Score=47.66 Aligned_cols=89 Identities=15% Similarity=0.088 Sum_probs=63.4
Q ss_pred ccccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCC
Q 023097 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGG 153 (287)
Q Consensus 74 d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~gg 153 (287)
-....+..|+++||++|+|++|.| =.|.. ....+.|-+.||-++=...... .++
T Consensus 318 ~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-------------~~~ydLcDelGllV~~Ea~~~~--------~~~ 371 (808)
T COG3250 318 TDEDAMERDLKLMKEANMNSVRTS-----HYPNS-------------EEFYDLCDELGLLVIDEAMIET--------HGM 371 (808)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-------------HHHHHHHHHhCcEEEEecchhh--------cCC
Confidence 334558999999999999999998 33332 3445667788998887654311 133
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCC--ccEEEEecCCc
Q 023097 154 WLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPL 188 (287)
Q Consensus 154 w~~~~~~~~f~~ya~~v~~~~~d~--V~~w~t~NEP~ 188 (287)
...++..+...+=+++.++|-+++ |-.|..-||.+
T Consensus 372 ~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 372 PDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 344555666666688899998886 88899999965
No 44
>smart00642 Aamy Alpha-amylase domain.
Probab=89.94 E-value=0.7 Score=39.30 Aligned_cols=64 Identities=19% Similarity=0.279 Sum_probs=42.9
Q ss_pred ccCcHHHHHHHHHcCCCccccccCcCcccc--CCCC------CccCh--hHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFP--DGLG------TKINM--EGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P--~~~g------~~~n~--~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
+....+-++.++++|++++-++=-+..... ...| ..+++ -..+-++++|++|+++||++++++.
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 445666778999999999988744333321 1001 01221 1346689999999999999999974
No 45
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=89.88 E-value=1.7 Score=40.83 Aligned_cols=89 Identities=21% Similarity=0.305 Sum_probs=50.9
Q ss_pred CcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcH-HhHhhcCCCCC
Q 023097 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPL-HLHESMGGWLN 156 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~-wl~~~~ggw~~ 156 (287)
..+.|+.+|++||+|++|+= .|-|+. | .|.....|.++||-++++|.. |. -+... ..|..
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~~-----n------Hd~CM~~~~~aGIYvi~Dl~~---p~~sI~r~-~P~~s 114 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPSK-----N------HDECMSAFADAGIYVILDLNT---PNGSINRS-DPAPS 114 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TTS-------------HHHHHHHHHTT-EEEEES-B---TTBS--TT-S----
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCCC-----C------HHHHHHHHHhCCCEEEEecCC---CCccccCC-CCcCC
Confidence 57899999999999999973 233432 3 688899999999999999973 42 22111 11100
Q ss_pred hHHHHHHHHHHHHHHHHhCC--CccEEEEecCC
Q 023097 157 KEIVKYFEIYADTCFASFGD--RVKNWITINEP 187 (287)
Q Consensus 157 ~~~~~~f~~ya~~v~~~~~d--~V~~w~t~NEP 187 (287)
=....|.+|... ++.|+. .+-.+..=||-
T Consensus 115 -w~~~l~~~~~~v-id~fa~Y~N~LgFf~GNEV 145 (314)
T PF03198_consen 115 -WNTDLLDRYFAV-IDAFAKYDNTLGFFAGNEV 145 (314)
T ss_dssp ---HHHHHHHHHH-HHHHTT-TTEEEEEEEESS
T ss_pred -CCHHHHHHHHHH-HHHhccCCceEEEEeccee
Confidence 023455555444 444443 46667777774
No 46
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=85.76 E-value=0.32 Score=47.99 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=77.4
Q ss_pred cHHHHHHHHHcCCCcccccc-CcCccccCCCCCccChhH-HHHHHHHHHHHHHCCCeeEEEec----cCCCcHHhHhhcC
Q 023097 79 YKEDIDLIAKLGFDAYRFSI-SWSRIFPDGLGTKINMEG-ITFYNNIIDALLQKGIQPYVTLY----HWDLPLHLHESMG 152 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si-~W~ri~P~~~g~~~n~~~-~~~y~~~i~~l~~~GI~p~vtL~----h~~~P~wl~~~~g 152 (287)
.+.|+..++.+|++..|++| +=..+-.. .| ..|.+. +.+.+.+++.+...+|++++||. |+.--.|-..=.|
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc~d~-~G-~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag 105 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDCRDK-EG-YRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAG 105 (587)
T ss_pred hhcccccccCccceeEEEEEecCcchhhh-hc-eecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCC
Confidence 45788999999999999984 21222222 26 666654 89999999999999999999976 3332222111001
Q ss_pred C------CCChHHHHHHHHHHHHHHHHhCCC--ccEEEEecCCcc
Q 023097 153 G------WLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPLQ 189 (287)
Q Consensus 153 g------w~~~~~~~~f~~ya~~v~~~~~d~--V~~w~t~NEP~~ 189 (287)
+ -..+.+...|.+|++.+++.|+-. +..|..=|||-+
T Consensus 106 ~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 106 EQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 1 234567788999999999999875 666999999765
No 47
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=82.22 E-value=5.8 Score=37.18 Aligned_cols=96 Identities=19% Similarity=0.348 Sum_probs=64.2
Q ss_pred cCcHHHHHHHHHcCCCccccccC-------------cCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec-c--
Q 023097 77 HRYKEDIDLIAKLGFDAYRFSIS-------------WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-- 140 (287)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~-------------W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~-h-- 140 (287)
...++-++.|+++|+|++=+.+. |++..+...| ...+++.+..+|++++++||++..-+. .
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~---~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~ 95 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQG---KDPGFDPLEFMIEEAHKRGLEVHAWFRVGFN 95 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCC---CCCCccHHHHHHHHHHHcCCEEEEEEEeecC
Confidence 34667789999999997654433 4443332112 123578899999999999999875541 1
Q ss_pred --------CCCcHHhHhh-------c----CC--CC---ChHHHHHHHHHHHHHHHHhC
Q 023097 141 --------WDLPLHLHES-------M----GG--WL---NKEIVKYFEIYADTCFASFG 175 (287)
Q Consensus 141 --------~~~P~wl~~~-------~----gg--w~---~~~~~~~f~~ya~~v~~~~~ 175 (287)
-..|.|+..+ + ++ |. +|++.+...+-++.|+++|.
T Consensus 96 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 96 APDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred CCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1236665421 1 22 44 56889999999999999995
No 48
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=81.73 E-value=2.3 Score=38.12 Aligned_cols=58 Identities=21% Similarity=0.438 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCccccccCcCccccCC-CC------CccCh--hHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LG------TKINM--EGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g------~~~n~--~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
.+-++.+++|||+++-++=-+. .|.. .| ..+|+ -..+=+.++|++|+++||++|+++.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~--~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFE--SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EE--SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccc--cccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4568899999999998873333 1101 11 11222 1456799999999999999999975
No 49
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=81.29 E-value=3.8 Score=40.39 Aligned_cols=128 Identities=11% Similarity=0.092 Sum_probs=75.1
Q ss_pred cHHHHHHHHHcCCCccccccC-cC-ccccCCCCCccChhHHHHHHHHHHHHHHCC-CeeEEEeccCCCcHHhHhhcCCCC
Q 023097 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKG-IQPYVTLYHWDLPLHLHESMGGWL 155 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~~n~~~~~~y~~~i~~l~~~G-I~p~vtL~h~~~P~wl~~~~ggw~ 155 (287)
-++.+++|+++|+|.+-+++. -+ .+...- | +.. ..+-..+.|+.+++.| +.+.++|- +++|. .
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l-g-R~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg---------q 227 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRRA-G-RKD--DREEVLARLEELVARDRAAVVCDLI-FGLPG---------Q 227 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHHh-C-CCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCC---------C
Confidence 467899999999997777763 21 111111 3 221 1355678899999999 77888876 56662 2
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCccEEEEecCCccccccCccccccCCCCCCCCCchhHHHHHHHHHHH
Q 023097 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAH 223 (287)
Q Consensus 156 ~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~AH 223 (287)
+.+.|.+=.+.+.+-=-++|..+...-||+....--+..|.+++........++|+.+...+.++
T Consensus 228 ---T~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~ 292 (449)
T PRK09058 228 ---TPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKA 292 (449)
T ss_pred ---CHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHC
Confidence 23344444444444333678888888899864433333455543201112234566666666654
No 50
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=81.22 E-value=4.6 Score=33.12 Aligned_cols=57 Identities=11% Similarity=0.182 Sum_probs=38.6
Q ss_pred HHHHHHHcCCCccccccC--cCc-cccCCCCCc--cChhHHHHHHHHHHHHHHCCCeeEEEecc
Q 023097 82 DIDLIAKLGFDAYRFSIS--WSR-IFPDGLGTK--INMEGITFYNNIIDALLQKGIQPYVTLYH 140 (287)
Q Consensus 82 Di~l~~~lG~~~~R~si~--W~r-i~P~~~g~~--~n~~~~~~y~~~i~~l~~~GI~p~vtL~h 140 (287)
=++.++++|+|++-+... +-- -.|+.-| . ...+ -+.+.++|++|+++||++++=+..
T Consensus 5 ~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~-~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 5 FVDTLKEAHVNSITIFAKCHGGYAYYPTKVG-PRHPGLK-RDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHhCCCEEEEEcccccEEEEccCCCC-cCCCCCC-cCHHHHHHHHHHHCCCEEEEEEee
Confidence 368899999999988332 111 1333322 1 1112 488999999999999999987653
No 51
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=80.76 E-value=2.8 Score=31.57 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=14.0
Q ss_pred HHHHhCC--CccEEEEecC-Cc
Q 023097 170 CFASFGD--RVKNWITINE-PL 188 (287)
Q Consensus 170 v~~~~~d--~V~~w~t~NE-P~ 188 (287)
++++||+ +|.+|.++|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4677876 6999999999 76
No 52
>PRK12313 glycogen branching enzyme; Provisional
Probab=80.65 E-value=7.4 Score=40.05 Aligned_cols=92 Identities=17% Similarity=0.301 Sum_probs=58.6
Q ss_pred cCcHHH-HHHHHHcCCCccccc-c-------Cc-------CccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEe--
Q 023097 77 HRYKED-IDLIAKLGFDAYRFS-I-------SW-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL-- 138 (287)
Q Consensus 77 ~~~~eD-i~l~~~lG~~~~R~s-i-------~W-------~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL-- 138 (287)
.-..+. ++-+++||++++=+. | +| -.+.|.- | . .+=++++|++|+++||++|+++
T Consensus 170 ~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~-G-t-----~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 170 RELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY-G-T-----PEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC-C-C-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 334456 489999999998755 2 22 2233332 3 2 3458999999999999999995
Q ss_pred ccCCCcH----HhH--------h---h-cCCC-------CChHHHHHHHHHHHHHHHHhC
Q 023097 139 YHWDLPL----HLH--------E---S-MGGW-------LNKEIVKYFEIYADTCFASFG 175 (287)
Q Consensus 139 ~h~~~P~----wl~--------~---~-~ggw-------~~~~~~~~f~~ya~~v~~~~~ 175 (287)
.|..... ++. . . +..| .++++.+.+.+-++.-++.|+
T Consensus 243 nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 243 GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4543211 110 0 0 0123 367888888888888888876
No 53
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=80.48 E-value=9.6 Score=34.07 Aligned_cols=80 Identities=19% Similarity=0.355 Sum_probs=54.2
Q ss_pred ccccccCcHHHHHHHHHcCCCcccc----------------------ccCcCccccCCCCCccChhHHHHHHHHHHHHHH
Q 023097 72 AVDHYHRYKEDIDLIAKLGFDAYRF----------------------SISWSRIFPDGLGTKINMEGITFYNNIIDALLQ 129 (287)
Q Consensus 72 a~d~~~~~~eDi~l~~~lG~~~~R~----------------------si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~ 129 (287)
+.+---.-+.-++++++||.+++.| +| | +||+| | +| ++.+..++..|++
T Consensus 130 ~~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG-G--Id---l~Nf~~I~~i~ld 200 (236)
T TIGR03581 130 GKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG-G--ID---LDNFEEIVQIALD 200 (236)
T ss_pred CCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC-C--cc---HHhHHHHHHHHHH
Confidence 3344456778899999999997763 44 3 69986 5 88 7889999999999
Q ss_pred CCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHH
Q 023097 130 KGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFE 164 (287)
Q Consensus 130 ~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~ 164 (287)
.|++-++ .|- + ..+-++-.|-+.++.+....
T Consensus 201 aGv~kvi--PHI-Y-ssiIDk~tG~TrpedV~~l~ 231 (236)
T TIGR03581 201 AGVEKVI--PHV-Y-SSIIDKETGNTRVEDVKQLL 231 (236)
T ss_pred cCCCeec--ccc-c-eeccccccCCCCHHHHHHHH
Confidence 9998765 331 1 11223335667766555443
No 54
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.15 E-value=5.1 Score=39.85 Aligned_cols=136 Identities=18% Similarity=0.305 Sum_probs=82.7
Q ss_pred ccCcHHHHHHHHHcCCCccccc----cCcCccccCC----------------------------CCCccCh----hHHHH
Q 023097 76 YHRYKEDIDLIAKLGFDAYRFS----ISWSRIFPDG----------------------------LGTKINM----EGITF 119 (287)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~s----i~W~ri~P~~----------------------------~g~~~n~----~~~~~ 119 (287)
|.+|+..|+.|+-.|+|..=.. +-|.+|+-.- .| .+.+ .-+-.
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgG-pLs~aw~~~ql~L 155 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGG-PLSPAWMLNQLLL 155 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCC-CCCHHHHHHHHHH
Confidence 6789999999999999965322 2355544332 02 2221 12333
Q ss_pred HHHHHHHHHHCCCeeEEEeccCCCcHHhHhhc--------CCCC---------------ChHHHHHHHHHHHHHHHHhCC
Q 023097 120 YNNIIDALLQKGIQPYVTLYHWDLPLHLHESM--------GGWL---------------NKEIVKYFEIYADTCFASFGD 176 (287)
Q Consensus 120 y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~--------ggw~---------------~~~~~~~f~~ya~~v~~~~~d 176 (287)
=.++|+++++-||+|++--+-.-.|..|..-+ +.|. .|-+++-=..|-+...+.||+
T Consensus 156 qkrIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~ 235 (666)
T KOG2233|consen 156 QKRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGG 235 (666)
T ss_pred HHHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCC
Confidence 46899999999999999877666787776532 2222 122444445566778889996
Q ss_pred C--ccEEEEecCCccccccCccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 023097 177 R--VKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKY 234 (287)
Q Consensus 177 ~--V~~w~t~NEP~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~AHa~a~~~~r~~~ 234 (287)
- +-.=-||||.. ||... .+ -+--+.+.+|+.+++..
T Consensus 236 ~tniy~~DpFNE~~------------Pp~se----pe------y~~staaAiyesm~kvd 273 (666)
T KOG2233|consen 236 VTNIYSADPFNEIL------------PPESE----PE------YVKSTAAAIYESMKKVD 273 (666)
T ss_pred cccccccCcccccC------------CCCCC----hH------HHHHHHHHHHHHHhccC
Confidence 3 22233888853 45321 11 23344566788888765
No 55
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=80.03 E-value=9.8 Score=35.36 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=70.9
Q ss_pred cHHHHHHHHHcCCC--ccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCC---cHHhH-----
Q 023097 79 YKEDIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLHLH----- 148 (287)
Q Consensus 79 ~~eDi~l~~~lG~~--~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~---P~wl~----- 148 (287)
..+-++.+++.|+. .+=+.+.|..-. + ...+|.+.+---..++++|+++|+++++.+.=+-. +..-.
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g-~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g 108 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--G-DFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKG 108 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--C-ccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCC
Confidence 44557888888864 666667775431 2 12566666666789999999999999887653221 11111
Q ss_pred ----hhcC----------------CCCChHHHHHHHHHHHHHHHHhCCCccEEEEecCCc
Q 023097 149 ----ESMG----------------GWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPL 188 (287)
Q Consensus 149 ----~~~g----------------gw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~ 188 (287)
...| .+.||+..+.|.+..+.+....|= --+|+=+|||.
T Consensus 109 ~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 109 YLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred eEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 0001 156899999999988888877752 34488899997
No 56
>PRK05402 glycogen branching enzyme; Provisional
Probab=79.98 E-value=8.2 Score=40.44 Aligned_cols=90 Identities=18% Similarity=0.252 Sum_probs=57.1
Q ss_pred cHHHH-HHHHHcCCCccccc-c-------Cc-------CccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEe--cc
Q 023097 79 YKEDI-DLIAKLGFDAYRFS-I-------SW-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL--YH 140 (287)
Q Consensus 79 ~~eDi-~l~~~lG~~~~R~s-i-------~W-------~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL--~h 140 (287)
..+.+ +-+++||++++=+. | +| -.+.|.- | . .+=++++|++|+++||++|+++ .|
T Consensus 267 i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~-G-t-----~~dfk~lV~~~H~~Gi~VilD~V~NH 339 (726)
T PRK05402 267 LADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF-G-T-----PDDFRYFVDACHQAGIGVILDWVPAH 339 (726)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc-C-C-----HHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 33453 78899999998765 2 12 1222221 3 2 3558999999999999999995 35
Q ss_pred CCCcH-----------HhHh-----hcCC-------CCChHHHHHHHHHHHHHHHHhC
Q 023097 141 WDLPL-----------HLHE-----SMGG-------WLNKEIVKYFEIYADTCFASFG 175 (287)
Q Consensus 141 ~~~P~-----------wl~~-----~~gg-------w~~~~~~~~f~~ya~~v~~~~~ 175 (287)
+.... +... .+.. +.++++.+.+.+-++.-+++|+
T Consensus 340 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 340 FPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 53211 1000 0111 3467888888888888888876
No 57
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=79.68 E-value=3.2 Score=39.54 Aligned_cols=124 Identities=17% Similarity=0.210 Sum_probs=69.8
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCC---CCCccChhHHHHHHHHHHHHHHCCCe-eEEEeccCCCcHHhHhhcCCC
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGW 154 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~---~g~~~n~~~~~~y~~~i~~l~~~GI~-p~vtL~h~~~P~wl~~~~ggw 154 (287)
-++.++.|+++|++ |+||.-..+-++- -| +.. ..+-+.+.|+.+++.|+. +-++|- +++|.
T Consensus 98 t~e~l~~l~~~G~~--rvsiGvqS~~d~~L~~l~-R~~--~~~~~~~ai~~l~~~g~~~v~~dli-~GlPg--------- 162 (374)
T PRK05799 98 TEEKLKILKSMGVN--RLSIGLQAWQNSLLKYLG-RIH--TFEEFLENYKLARKLGFNNINVDLM-FGLPN--------- 162 (374)
T ss_pred CHHHHHHHHHcCCC--EEEEECccCCHHHHHHcC-CCC--CHHHHHHHHHHHHHcCCCcEEEEee-cCCCC---------
Confidence 46789999999999 5555544443331 13 221 256788899999999997 446654 55552
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCccEEEEecCCccccccCccccccC-CCCCCCCCchhHHHHHHHHHH
Q 023097 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFA-PGRHQHSSTEPYLVAHHQILA 222 (287)
Q Consensus 155 ~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~~~~~~gy~~g~~~-p~~~~~~~~~~~~~~hn~l~A 222 (287)
. +.+.|.+-.+.+.+.=-++|..+...-+|+....--+..|.+. |.. .....++..+..++.+
T Consensus 163 q---t~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~--~~~~~~~~~~~~~l~~ 226 (374)
T PRK05799 163 Q---TLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNLYENGKLKLPDE--EEEREMYHYTIEFLKE 226 (374)
T ss_pred C---CHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHHHhcCCCCCCCh--HHHHHHHHHHHHHHHH
Confidence 2 2445555555555432366777666668875433223334333 321 1223445555555554
No 58
>PRK09936 hypothetical protein; Provisional
Probab=79.18 E-value=14 Score=34.36 Aligned_cols=98 Identities=21% Similarity=0.333 Sum_probs=61.9
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChH
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKE 158 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~ 158 (287)
|++=+..++.+|+++ +=+.|++.--+.-| .-+ .+..+.++.+.+.||+++|.|+ +| |.|..... .++.
T Consensus 40 Wq~~~~~~~~~G~~t--LivQWt~yG~~~fg-~~~----g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q~~~---~d~~ 107 (296)
T PRK09936 40 WQGLWSQLRLQGFDT--LVVQWTRYGDADFG-GQR----GWLAKRLAAAQQAGLKLVVGLY-AD-PEFFMHQK---QDGA 107 (296)
T ss_pred HHHHHHHHHHcCCcE--EEEEeeeccCCCcc-cch----HHHHHHHHHHHHcCCEEEEccc-CC-hHHHHHHh---cCch
Confidence 556688999999998 56789998221113 223 5789999999999999999997 56 76665421 2222
Q ss_pred HHH-HHHH-------HHHHHHHHhCCCccEEEEecCCc
Q 023097 159 IVK-YFEI-------YADTCFASFGDRVKNWITINEPL 188 (287)
Q Consensus 159 ~~~-~f~~-------ya~~v~~~~~d~V~~w~t~NEP~ 188 (287)
..+ .+.+ .++...++.+-.|+.|-+==|+.
T Consensus 108 ~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElD 145 (296)
T PRK09936 108 ALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELD 145 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccc
Confidence 222 2222 33444555555666665433433
No 59
>PLN02361 alpha-amylase
Probab=78.10 E-value=2.8 Score=40.78 Aligned_cols=65 Identities=14% Similarity=0.279 Sum_probs=44.8
Q ss_pred ccccCcHHHHHHHHHcCCCccccccCcCccccCCCC----CccChh--HHHHHHHHHHHHHHCCCeeEEEe
Q 023097 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG----TKINME--GITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 74 d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g----~~~n~~--~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
.+|....+-++-+++||++++=++=......+.+-. ..+|.. ..+=++++|++|+++||++++++
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 478889999999999999998776433222222100 011111 23558999999999999999985
No 60
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=77.69 E-value=42 Score=31.59 Aligned_cols=146 Identities=14% Similarity=0.066 Sum_probs=80.6
Q ss_pred Ccccc---CCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCC---cHHh---------Hhhc---CCCC-----C-
Q 023097 101 SRIFP---DGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLHL---------HESM---GGWL-----N- 156 (287)
Q Consensus 101 ~ri~P---~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~---P~wl---------~~~~---ggw~-----~- 156 (287)
.+..| ...+ -++++-+..++++.+.++++|-+.++=|+|.+- +.+. .... .... +
T Consensus 63 ~~~~~~~~~~~~-~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~ 141 (338)
T cd04733 63 HLEEPGIIGNVV-LESGEDLEAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTE 141 (338)
T ss_pred cccCCCcCCCcc-cCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCH
Confidence 35555 3235 678889999999999999999999999999432 1000 0000 0011 1
Q ss_pred ---hHHHHHHHHHHHHHHHHhC-CCccEEEEecCCccccccCccccccC-CCC-CCCCCchhHHHHHHHHHHHHHHHHHH
Q 023097 157 ---KEIVKYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIFA-PGR-HQHSSTEPYLVAHHQILAHAAAFSVY 230 (287)
Q Consensus 157 ---~~~~~~f~~ya~~v~~~~~-d~V~~w~t~NEP~~~~~~gy~~g~~~-p~~-~~~~~~~~~~~~hn~l~AHa~a~~~~ 230 (287)
.++++.|++=|+++ ++.| |-| .+.+-.||+...|. |.. +..+. .--.+-|=..--...++.+
T Consensus 142 ~eI~~~i~~~~~aA~ra-~~aGfDgV---------eih~a~gyLl~qFlsp~~N~R~D~--yGGslenR~rf~~EiI~aI 209 (338)
T cd04733 142 EEIEDVIDRFAHAARLA-QEAGFDGV---------QIHAAHGYLLSQFLSPLTNKRTDE--YGGSLENRARLLLEIYDAI 209 (338)
T ss_pred HHHHHHHHHHHHHHHHH-HHcCCCEE---------EEchhhhhHHHHhcCCcCCCCCcc--CCCCHHHHHHHHHHHHHHH
Confidence 13567777655543 4444 222 23344577766553 432 11111 1112345455555667777
Q ss_pred HHhccCCCCceEEeeecCceeeeCCCCHHHH
Q 023097 231 QRKYKDKQGGNIGLVVDCEWAEANSDKIEDK 261 (287)
Q Consensus 231 r~~~~~~~~~kIG~~~~~~~~~P~~~~p~Dv 261 (287)
|+... ++..|++-++...+.+...++++.
T Consensus 210 R~avG--~d~~v~vris~~~~~~~g~~~eea 238 (338)
T cd04733 210 RAAVG--PGFPVGIKLNSADFQRGGFTEEDA 238 (338)
T ss_pred HHHcC--CCCeEEEEEcHHHcCCCCCCHHHH
Confidence 76542 456788888765554544455553
No 61
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=77.05 E-value=10 Score=35.08 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=63.2
Q ss_pred cccccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCC------CcHH
Q 023097 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD------LPLH 146 (287)
Q Consensus 73 ~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~------~P~w 146 (287)
.--+..+++=|+..+++|+..+=+.--|+.-.+...........-....++++..+++|+.+++-.++-+ +=.-
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~ 107 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQ 107 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHH
Confidence 4456778899999999999999999999974332210001111124578999999999999999988755 1111
Q ss_pred hHh---hc---C------CC---CChHHHHHHHHHHHHHHHH
Q 023097 147 LHE---SM---G------GW---LNKEIVKYFEIYADTCFAS 173 (287)
Q Consensus 147 l~~---~~---g------gw---~~~~~~~~f~~ya~~v~~~ 173 (287)
+.+ .| | |+ .+...++.|.+.++.++++
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 111 11 1 22 3556788888888888774
No 62
>PLN00196 alpha-amylase; Provisional
Probab=76.73 E-value=3.6 Score=40.41 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=43.7
Q ss_pred cccCcHHHHHHHHHcCCCccccccCcCccccCCCC----CccCh---hHHHHHHHHHHHHHHCCCeeEEEe
Q 023097 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG----TKINM---EGITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 75 ~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g----~~~n~---~~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
.|....+.++-+++||++++=++=......+.+-. ..+|+ -.-+=++++|++|+++||++|++.
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46667889999999999999887433332222210 01221 012458999999999999999984
No 63
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=76.12 E-value=29 Score=32.22 Aligned_cols=145 Identities=17% Similarity=0.209 Sum_probs=79.6
Q ss_pred ccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCC---cHH----------hHhhcCCC----C----ChHHH
Q 023097 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLH----------LHESMGGW----L----NKEIV 160 (287)
Q Consensus 102 ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~---P~w----------l~~~~ggw----~----~~~~~ 160 (287)
+..|...| -++++.+..++++++.++++|-+.++=|.|.+- |.. ......+- . =.+++
T Consensus 62 ~~~~~~~~-~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i 140 (327)
T cd02803 62 KGYPGQLG-IYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQII 140 (327)
T ss_pred cCCCCCcC-cCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHH
Confidence 33444336 678899999999999999999999999998542 100 00000000 1 12477
Q ss_pred HHHHHHHHHHHHHhC-CCccEEEEecCCccccccCcccccc-CCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHhccCC
Q 023097 161 KYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIF-APGR-HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDK 237 (287)
Q Consensus 161 ~~f~~ya~~v~~~~~-d~V~~w~t~NEP~~~~~~gy~~g~~-~p~~-~~~~~~~~~~~~hn~l~AHa~a~~~~r~~~~~~ 237 (287)
+.|++-|+.+.+. | |-|. +.+-.||+...| .|.. +..+... -..-|-..--...++.+|+...
T Consensus 141 ~~~~~aA~~a~~a-GfDgve---------ih~~~gyL~~qFlsp~~n~R~d~yG--gs~enr~r~~~eii~avr~~~g-- 206 (327)
T cd02803 141 EDFAAAARRAKEA-GFDGVE---------IHGAHGYLLSQFLSPYTNKRTDEYG--GSLENRARFLLEIVAAVREAVG-- 206 (327)
T ss_pred HHHHHHHHHHHHc-CCCEEE---------EcchhhhHHHHhcCccccCCCcccC--CCHHHHHHHHHHHHHHHHHHcC--
Confidence 8888888777653 3 2232 333456765433 3321 0011100 1122333333456666776542
Q ss_pred CCceEEeeecCceeeeCCCCHHHH
Q 023097 238 QGGNIGLVVDCEWAEANSDKIEDK 261 (287)
Q Consensus 238 ~~~kIG~~~~~~~~~P~~~~p~Dv 261 (287)
++..||+-++.....+...++++.
T Consensus 207 ~d~~i~vris~~~~~~~g~~~~e~ 230 (327)
T cd02803 207 PDFPVGVRLSADDFVPGGLTLEEA 230 (327)
T ss_pred CCceEEEEechhccCCCCCCHHHH
Confidence 456888888866555433445553
No 64
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=74.14 E-value=8.3 Score=34.91 Aligned_cols=60 Identities=25% Similarity=0.227 Sum_probs=46.9
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCC-CCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
-.+|++...+.|++.+|+.++.+.+.-.. -+ .-.++.++...++++.+++.|+++.+++.
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 131 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLG-KDRAWVLDQLRRLVGRAKDRGLFVSVGAE 131 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEeec
Confidence 47899999999999999999877664322 12 22346788999999999999998876653
No 65
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=73.86 E-value=8.6 Score=35.49 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=51.2
Q ss_pred CcHHHHHHHHHcCCCccccccCcCccccCC-CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCc
Q 023097 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P 144 (287)
+-..|++.+.+.|++.+++.++=|...-.. -+ .--.+.++.+.++++.+++.|+++.+++-+|+.|
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~-~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~ 141 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLR-KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNG 141 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHC-cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCC
Confidence 456799999999999999998654443332 13 2335678999999999999999999999887644
No 66
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=73.54 E-value=7 Score=39.48 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=41.2
Q ss_pred cccCcHHHHHHHHHcCCCccccccCc--------------CccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 75 HYHRYKEDIDLIAKLGFDAYRFSISW--------------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 75 ~~~~~~eDi~l~~~lG~~~~R~si~W--------------~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
.+.-..+-++-+++||++++=++=-. .+|.|.- | ..+-++++|++|+++||++|+++.
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~-G------t~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLF-G------TMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCccc-C------CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34456677899999999998665221 1222221 2 246689999999999999999964
No 67
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=73.12 E-value=5.6 Score=40.24 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=39.5
Q ss_pred ccCcHHHHHHHHHcCCCccccc-c-C------c-------CccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 76 YHRYKEDIDLIAKLGFDAYRFS-I-S------W-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~s-i-~------W-------~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
+.-..+-++-+++||++++-+. | + | -.+.|.- | ..+=+.++|++|+++||++|+++.
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~-G------~~~e~k~lV~~aH~~Gi~VilD~V 181 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY-G------GPDDLKALVDAAHGLGLGVILDVV 181 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc-C------CHHHHHHHHHHHHHCCCEEEEEEc
Confidence 3344566899999999998765 2 1 2 1122221 3 245689999999999999999954
No 68
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=73.06 E-value=10 Score=34.41 Aligned_cols=143 Identities=18% Similarity=0.165 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHCCCeeEEEeccC--------------CCcHHhHhh----------------cCC----CCChH-----
Q 023097 118 TFYNNIIDALLQKGIQPYVTLYHW--------------DLPLHLHES----------------MGG----WLNKE----- 158 (287)
Q Consensus 118 ~~y~~~i~~l~~~GI~p~vtL~h~--------------~~P~wl~~~----------------~gg----w~~~~----- 158 (287)
+.++.+|+..++.|.++|+||.=. ..|.|-... .++ -.+|+
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 789999999999999999998621 122221110 011 11333
Q ss_pred -HHHHHHHHHHHHHHHhCCC-----ccEEEEecCCccccccCccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 023097 159 -IVKYFEIYADTCFASFGDR-----VKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQR 232 (287)
Q Consensus 159 -~~~~f~~ya~~v~~~~~d~-----V~~w~t~NEP~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~AHa~a~~~~r~ 232 (287)
.++.| +..+..+||.. |++|.+-|||.+... .++- .+ .....+.=+....++.|+|++..
T Consensus 104 ~y~~ew---V~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~------TH~d-VH--P~~~t~~El~~r~i~~AkaiK~~-- 169 (239)
T PF12891_consen 104 VYMDEW---VNYLVNKYGNASTNGGVKYYSLDNEPDLWHS------THRD-VH--PEPVTYDELRDRSIEYAKAIKAA-- 169 (239)
T ss_dssp EEHHHH---HHHHHHHH--TTSTTS--EEEESS-GGGHHH------HTTT-T----S---HHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHH---HHHHHHHHhccccCCCceEEEecCchHhhcc------cccc-cC--CCCCCHHHHHHHHHHHHHHHHhh--
Confidence 34544 66677777764 999999999997532 2221 11 11233455566677777775554
Q ss_pred hccCCCCce-EEeeecCceeeeCCCC----HHHHHHHHHHHhhhccccchhhh
Q 023097 233 KYKDKQGGN-IGLVVDCEWAEANSDK----IEDKSAAARRLDFQIGWYCLKYS 280 (287)
Q Consensus 233 ~~~~~~~~k-IG~~~~~~~~~P~~~~----p~Dv~Aa~~~~~~~n~~flDp~~ 280 (287)
. |.++ +|.+.-....|-.+.. ..|+.+-... .| ..|||+=|.
T Consensus 170 -D---P~a~v~GP~~wgw~~y~~~~~d~~~~~d~~~~g~~-~f-l~wyL~qm~ 216 (239)
T PF12891_consen 170 -D---PDAKVFGPVEWGWCGYFSSADDAPGWPDRAAHGNY-DF-LPWYLDQMK 216 (239)
T ss_dssp -----TTSEEEEEEE-SHHHHHHTTTHHTTHHHHHHTTT--SH-HHHHHHHHH
T ss_pred -C---CCCeEeechhhccceeeccCccccccccccccCCc-ch-HHHHHHHHH
Confidence 3 4664 5766444444433332 1344232222 23 567887654
No 69
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=72.43 E-value=12 Score=37.17 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=43.8
Q ss_pred cccCcHHH-----HHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcH
Q 023097 75 HYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPL 145 (287)
Q Consensus 75 ~~~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~ 145 (287)
.|..|.+| +++.++.|++.+|..-. +|+ ++-....|+.+++.|....+++.+-+.|.
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~------------lnd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp~ 159 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDA------------LND--PRNIQQALRAVKKTGKEAQLCIAYTTSPV 159 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEccc------------CCC--HHHHHHHHHHHHHcCCEEEEEEEEEeCCc
Confidence 57889999 99999999999997532 222 45567788888888988888888766663
No 70
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=72.41 E-value=14 Score=34.22 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=58.5
Q ss_pred CcHHHHHHHHHcCCCccccccCcCccccCC-CCCccChhHHHHHHHHHHHHHHCCCeeEEEecc-CCCcHHhHhhcCCCC
Q 023097 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYH-WDLPLHLHESMGGWL 155 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h-~~~P~wl~~~~ggw~ 155 (287)
+-.+|+++..+.|++.+|+.++=+...-.. -+ .=..+.++...++|+.++++|+++.+++.. |..| +.|..
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~-~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~------~~~~~ 152 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNIN-CSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP------YEGEV 152 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC------CCCCC
Confidence 468999999999999999998654432221 13 223467889999999999999999877763 4444 12322
Q ss_pred ChHHHHHHHHHHHHHHH
Q 023097 156 NKEIVKYFEIYADTCFA 172 (287)
Q Consensus 156 ~~~~~~~f~~ya~~v~~ 172 (287)
+ .+.+.++++.+.+
T Consensus 153 ~---~~~~~~~~~~~~~ 166 (287)
T PRK05692 153 P---PEAVADVAERLFA 166 (287)
T ss_pred C---HHHHHHHHHHHHH
Confidence 2 4556666666654
No 71
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=72.29 E-value=56 Score=30.51 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=50.1
Q ss_pred ccChhHHHHHHHHHHHHHHCCCeeEEEeccCCC-----cHHhHhh------------------------cCCCCChHHHH
Q 023097 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHWDL-----PLHLHES------------------------MGGWLNKEIVK 161 (287)
Q Consensus 111 ~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~-----P~wl~~~------------------------~ggw~~~~~~~ 161 (287)
.+|.+.+--..++|+.|+++|+++++.++-+-. |...... +-.|.||+..+
T Consensus 57 ~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ 136 (317)
T cd06600 57 TWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTRE 136 (317)
T ss_pred eechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHH
Confidence 344444444578999999999998887653321 2221110 01367889999
Q ss_pred HHHHHHHHHHHHhCCCccEEEEecCCccc
Q 023097 162 YFEIYADTCFASFGDRVKNWITINEPLQT 190 (287)
Q Consensus 162 ~f~~ya~~v~~~~~d~V~~w~t~NEP~~~ 190 (287)
.|.+..+.+....| -.-+|+=+|||..+
T Consensus 137 ww~~~~~~~~~~~g-vdg~w~D~~Ep~~~ 164 (317)
T cd06600 137 WWAGLFSEWLNSQG-VDGIWLDMNEPSDF 164 (317)
T ss_pred HHHHHHHHHhhcCC-CceEEeeCCCCccH
Confidence 88887777655443 23358899999643
No 72
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=71.19 E-value=9.6 Score=38.64 Aligned_cols=63 Identities=19% Similarity=0.353 Sum_probs=41.6
Q ss_pred cccCcHHHHHHHHHcCCCccccccCcCccccCCC-C------CccChh--HHHHHHHHHHHHHHCCCeeEEEec
Q 023097 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGL-G------TKINME--GITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 75 ~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g------~~~n~~--~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
-+.-..+.++-+++||++++=++=-+.. |..+ | ..+|+. ..+-++++|++|+++||++|+++.
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3455667899999999999877622211 1110 1 011111 245689999999999999999864
No 73
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=70.77 E-value=23 Score=36.36 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=57.7
Q ss_pred HHHH-HHHHHcCCCccccc-cCcCc--------------cccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec--cC
Q 023097 80 KEDI-DLIAKLGFDAYRFS-ISWSR--------------IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY--HW 141 (287)
Q Consensus 80 ~eDi-~l~~~lG~~~~R~s-i~W~r--------------i~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~--h~ 141 (287)
.+.+ +-+++||++++=+. |.... +.|.- | ..+=+.++|++|+++||++|+++. |.
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~-G------t~~dlk~lV~~~H~~Gi~VilD~V~NH~ 231 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRF-G------TPDDFMYFVDACHQAGIGVILDWVPGHF 231 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccccc-C------CHHHHHHHHHHHHHCCCEEEEEecccCc
Confidence 3454 88999999999874 43321 11111 2 134589999999999999999965 54
Q ss_pred CC-----------cHHhHhh-----cCCC-------CChHHHHHHHHHHHHHHHHhC
Q 023097 142 DL-----------PLHLHES-----MGGW-------LNKEIVKYFEIYADTCFASFG 175 (287)
Q Consensus 142 ~~-----------P~wl~~~-----~ggw-------~~~~~~~~f~~ya~~v~~~~~ 175 (287)
.. |.+.... +..| .++++.+.+.+-++..++.|+
T Consensus 232 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 232 PKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred CCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 31 1111100 0112 357888899998999888886
No 74
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=70.37 E-value=12 Score=33.46 Aligned_cols=61 Identities=21% Similarity=0.167 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCccccccCcCccccCC-CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccC
Q 023097 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW 141 (287)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~ 141 (287)
+++++.+++.|++.+|++++-+...-.. .+ .=.+..++...+.++.+++.|+++.+.+...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~ 138 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLN-KSREEDLENAEEAIEAAKEAGLEVEGSLEDA 138 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEee
Confidence 8999999999999999999866321111 01 1112357888999999999999999998543
No 75
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=70.25 E-value=14 Score=35.71 Aligned_cols=127 Identities=14% Similarity=0.166 Sum_probs=71.5
Q ss_pred cHHHHHHHHHcCCCccccccC-c-CccccCCCCCccChhHHHHHHHHHHHHHHCCCe-eEEEeccCCCcHHhHhhcCCCC
Q 023097 79 YKEDIDLIAKLGFDAYRFSIS-W-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGWL 155 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~-W-~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~-p~vtL~h~~~P~wl~~~~ggw~ 155 (287)
-++.++.|+++|++.+-+++. - .++...- |-..+ .+-..+.++.+++.|+. +.++|- +++|. .
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~l-~R~~~---~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg---------q 179 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLALC-GRSHR---VKDIFAAVDLIHQAGIENFSLDLI-SGLPH---------Q 179 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------C
Confidence 468899999999995555542 1 1111111 20122 45567889999999998 667775 56662 2
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCccEEEEecCCccccccCccccccCCCCCCCCCchhHHHHHHHHHHH
Q 023097 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAH 223 (287)
Q Consensus 156 ~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~AH 223 (287)
+ .+.+.+=.+.+.+-=-++|..+...-||+.....-+..|.+.+... ....+++..+...+.++
T Consensus 180 t---~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~-~~~~~~~~~~~~~L~~~ 243 (400)
T PRK07379 180 T---LEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSD-ETTAAMYRLAQEILTQA 243 (400)
T ss_pred C---HHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCCCCCCH-HHHHHHHHHHHHHHHHc
Confidence 2 3344443444443333678888888888865443344454432211 12234455555555554
No 76
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=70.22 E-value=7.9 Score=38.35 Aligned_cols=65 Identities=22% Similarity=0.256 Sum_probs=42.1
Q ss_pred ccccCcHHHHHHHHHcCCCccccccCcCcc--------ccCC---------CCCccChh--HHHHHHHHHHHHHHCCCee
Q 023097 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRI--------FPDG---------LGTKINME--GITFYNNIIDALLQKGIQP 134 (287)
Q Consensus 74 d~~~~~~eDi~l~~~lG~~~~R~si~W~ri--------~P~~---------~g~~~n~~--~~~~y~~~i~~l~~~GI~p 134 (287)
+.|....+-++-+++||++++=++=...-. -|.. .| .+|+. ..+=++++|++|+++||++
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~-~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKG-TVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccC-CcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 445556677899999999998777322211 1110 00 11211 2455899999999999999
Q ss_pred EEEec
Q 023097 135 YVTLY 139 (287)
Q Consensus 135 ~vtL~ 139 (287)
|+++.
T Consensus 98 i~D~V 102 (479)
T PRK09441 98 YADVV 102 (479)
T ss_pred EEEEC
Confidence 99854
No 77
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=68.63 E-value=19 Score=34.29 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=50.0
Q ss_pred HHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHH
Q 023097 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVK 161 (287)
Q Consensus 82 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~ 161 (287)
-|++|.+.|++-+=+|+ +.|++ -+...++.+.++++.+.+.|+++||+.. |+-|.+ -|| +...++
T Consensus 21 Yi~~~~~~Gf~~IFtsl----~~~~~----~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~-S~~~l~ 85 (360)
T COG3589 21 YIDRMHKYGFKRIFTSL----LIPEE----DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNI-SLDNLS 85 (360)
T ss_pred HHHHHHHcCccceeeec----ccCCc----hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCC-ChHHHH
Confidence 37888999988766665 34443 2345799999999999999999999984 877765 344 333455
Q ss_pred HHHHH
Q 023097 162 YFEIY 166 (287)
Q Consensus 162 ~f~~y 166 (287)
.|.+.
T Consensus 86 ~f~e~ 90 (360)
T COG3589 86 RFQEL 90 (360)
T ss_pred HHHHh
Confidence 55554
No 78
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=68.47 E-value=13 Score=35.61 Aligned_cols=106 Identities=17% Similarity=-0.012 Sum_probs=68.8
Q ss_pred CcHHHHHHHHHcCCCccccccCcCccccCC-CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCC--CcHHhHhh----
Q 023097 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD--LPLHLHES---- 150 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~--~P~wl~~~---- 150 (287)
-.++|++.+.+.|++.+|+.++-|.+.-.. -+ .-..+.++...+.++.+++.|+++.+++-... -|..+.+-
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~-~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~ 150 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLK-KSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRA 150 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHH
Confidence 468999999999999999988776664332 13 22345788899999999999999998875432 13332221
Q ss_pred --c----------CCCCChHHHHHHHHHHHHHHHHhCCCccE-EEEecCCcc
Q 023097 151 --M----------GGWLNKEIVKYFEIYADTCFASFGDRVKN-WITINEPLQ 189 (287)
Q Consensus 151 --~----------ggw~~~~~~~~f~~ya~~v~~~~~d~V~~-w~t~NEP~~ 189 (287)
. -|-. +++.+.++.+.+.++++ +.. +-.-|-..+
T Consensus 151 ~~~g~~~i~l~DT~G~~---~P~~v~~li~~l~~~~~--~~l~~H~Hnd~Gl 197 (363)
T TIGR02090 151 EEAGADRINIADTVGVL---TPQKMEELIKKLKENVK--LPISVHCHNDFGL 197 (363)
T ss_pred HhCCCCEEEEeCCCCcc---CHHHHHHHHHHHhcccC--ceEEEEecCCCCh
Confidence 0 1222 34556666666666664 333 456666654
No 79
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=67.88 E-value=24 Score=32.97 Aligned_cols=108 Identities=16% Similarity=0.182 Sum_probs=67.3
Q ss_pred HHHHHHHHHcCCC-ccccccC-c-Cccc-cC-CCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCC
Q 023097 80 KEDIDLIAKLGFD-AYRFSIS-W-SRIF-PD-GLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGW 154 (287)
Q Consensus 80 ~eDi~l~~~lG~~-~~R~si~-W-~ri~-P~-~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw 154 (287)
++.+++|+++|++ .+=++++ - .++. .. ..| .+ .+-+.+.++.++++||.+.+.+- +++|. .
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg--~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P~--------~ 182 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG--ST---FEDFIRAAELARKYGAGVKAYLL-FKPPF--------L 182 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC--CC---HHHHHHHHHHHHHcCCcEEEEEE-ecCCC--------C
Confidence 6889999999987 3555542 1 1111 11 112 23 46788999999999999777765 34451 1
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCccEEEEecCCccccccCccccccCC
Q 023097 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFAP 202 (287)
Q Consensus 155 ~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~~~~~~gy~~g~~~p 202 (287)
.-.++++.+.+.++.+.. +++.|....+.=+|+.....-|..|.|.|
T Consensus 183 se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 183 SEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred ChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 223567777777777765 35778877666666653333355566655
No 80
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=67.46 E-value=21 Score=33.21 Aligned_cols=84 Identities=13% Similarity=0.047 Sum_probs=49.4
Q ss_pred HHHHHcCCCccccccC--cCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHH
Q 023097 84 DLIAKLGFDAYRFSIS--WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVK 161 (287)
Q Consensus 84 ~l~~~lG~~~~R~si~--W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~ 161 (287)
+.+++.|++++-+++- -....|.-.| ............-|..|+++|++++|++-.+.-... -.+....+
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g-~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~-------~~~~~~~~ 90 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGG-SYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPL-------ATSCTSAD 90 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCC-CCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCcc-------ccCcccHH
Confidence 5677899998887753 1222222112 111011245677899999999999999854332110 01334566
Q ss_pred HHHHHHHHHHHHhC
Q 023097 162 YFEIYADTCFASFG 175 (287)
Q Consensus 162 ~f~~ya~~v~~~~~ 175 (287)
.|++....+.++|+
T Consensus 91 ~~~~a~~~~i~~y~ 104 (294)
T cd06543 91 QLAAAYQKVIDAYG 104 (294)
T ss_pred HHHHHHHHHHHHhC
Confidence 66666666777775
No 81
>PRK14705 glycogen branching enzyme; Provisional
Probab=66.89 E-value=28 Score=38.78 Aligned_cols=91 Identities=18% Similarity=0.246 Sum_probs=55.1
Q ss_pred HHHHHHcCCCccccc-c-------CcCccccCCCCCccCh--hHHHHHHHHHHHHHHCCCeeEEEec--cCCCcHHhHhh
Q 023097 83 IDLIAKLGFDAYRFS-I-------SWSRIFPDGLGTKINM--EGITFYNNIIDALLQKGIQPYVTLY--HWDLPLHLHES 150 (287)
Q Consensus 83 i~l~~~lG~~~~R~s-i-------~W~ri~P~~~g~~~n~--~~~~~y~~~i~~l~~~GI~p~vtL~--h~~~P~wl~~~ 150 (287)
++-+|+||++++=+. | +|- -.|..- ..++. -..+=++.+|++|+++||.+|+++. |+..=.|....
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y-~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~ 849 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSY-FAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQ 849 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCC-CCcccc-CCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhh
Confidence 688999999998654 2 231 111110 00110 0234589999999999999999954 55211221111
Q ss_pred c----------------CC-------CCChHHHHHHHHHHHHHHHHhC
Q 023097 151 M----------------GG-------WLNKEIVKYFEIYADTCFASFG 175 (287)
Q Consensus 151 ~----------------gg-------w~~~~~~~~f~~ya~~v~~~~~ 175 (287)
+ .. +.++++.+.+.+=+..-+++|+
T Consensus 850 fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 850 FDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred cCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1 11 2356777888888888888886
No 82
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=66.58 E-value=8.9 Score=35.03 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=46.9
Q ss_pred cCcHHHHHHHHHcCCCccccccCcCccccCC-CCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
..-.+|++...+.|++.+|+.++=|...-.. .+ .=-.+.++...++++.++++|+++.+++-
T Consensus 71 r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~-~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 71 RCHMDDARIAVETGVDGVDLVFGTSPFLREASHG-KSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred cCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 3357899999999999999988644432221 13 22246789999999999999999999985
No 83
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=66.22 E-value=19 Score=35.90 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=42.0
Q ss_pred ccccCcHHH-----HHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCc
Q 023097 74 DHYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (287)
Q Consensus 74 d~~~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P 144 (287)
-.|..|.+| ++..++.|++.+|+..+-+. ++-....++.+++.|+.+..++.+-..|
T Consensus 87 ~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd--------------~~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 87 VGYRHYADDVVELFVKKVAEYGLDIIRIFDALND--------------IRNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred cCcccccchhhHHHHHHHHHCCcCEEEEEEeCCH--------------HHHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 346778888 89999999999998875433 2345667788888888888777653335
No 84
>PRK03705 glycogen debranching enzyme; Provisional
Probab=65.92 E-value=12 Score=38.83 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=37.5
Q ss_pred HHHHHHcCCCccccc-c-C----------------------cCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEe
Q 023097 83 IDLIAKLGFDAYRFS-I-S----------------------WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 83 i~l~~~lG~~~~R~s-i-~----------------------W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
++-+|+||++++=+. | + +-.+.|.- |+..+ ..++=++++|++|+++||++|+++
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y-gt~~~-~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY-ASGPE-TALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc-CCCCc-chHHHHHHHHHHHHHCCCEEEEEE
Confidence 889999999998664 1 1 11222221 21111 235679999999999999999995
Q ss_pred c
Q 023097 139 Y 139 (287)
Q Consensus 139 ~ 139 (287)
.
T Consensus 263 V 263 (658)
T PRK03705 263 V 263 (658)
T ss_pred c
Confidence 4
No 85
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=65.74 E-value=19 Score=36.89 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=36.7
Q ss_pred cccCcHHH-----HHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEecc
Q 023097 75 HYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (287)
Q Consensus 75 ~~~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h 140 (287)
.|.+|.+| ++..++.|++.+|+..+.+. ++-....|+.++++|....+++..
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd--------------~~~~~~ai~~ak~~G~~~~~~i~y 146 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMND--------------PRNLETALKAVRKVGAHAQGTLSY 146 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCc--------------HHHHHHHHHHHHHcCCeEEEEEEE
Confidence 46777776 99999999999998853222 344566677777777776655543
No 86
>PRK10785 maltodextrin glucosidase; Provisional
Probab=65.54 E-value=13 Score=38.16 Aligned_cols=54 Identities=20% Similarity=0.277 Sum_probs=39.0
Q ss_pred cHHHHHHHHHcCCCcccccc-------------CcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 79 YKEDIDLIAKLGFDAYRFSI-------------SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si-------------~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
..+-++-+++||++++=++= ++.+|.|.- | ..+=++++|++|+++||++|+++.
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~-G------t~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQL-G------GDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCccc-C------CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 44568999999999987762 122233322 2 235689999999999999999964
No 87
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=65.25 E-value=18 Score=34.54 Aligned_cols=66 Identities=14% Similarity=0.009 Sum_probs=50.3
Q ss_pred CcHHHHHHHHHcCCCccccccCcCccccCCC-CCccChhHHHHHHHHHHHHHHCCCeeEEEecc-CCCc
Q 023097 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGL-GTKINMEGITFYNNIIDALLQKGIQPYVTLYH-WDLP 144 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h-~~~P 144 (287)
.-.+|++...+.|++.+++.++=|...-... + .=-.+.++.+.++|+.++++|+++.+++.. |+.|
T Consensus 122 ~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~-~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p 189 (347)
T PLN02746 122 PNLKGFEAAIAAGAKEVAVFASASESFSKSNIN-CSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCP 189 (347)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCC
Confidence 4789999999999999999886555543321 3 334578999999999999999999877753 4433
No 88
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=65.20 E-value=37 Score=31.41 Aligned_cols=106 Identities=15% Similarity=0.222 Sum_probs=67.1
Q ss_pred cHHHHHHHHHcCC--CccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCC---CcHHhHhh---
Q 023097 79 YKEDIDLIAKLGF--DAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD---LPLHLHES--- 150 (287)
Q Consensus 79 ~~eDi~l~~~lG~--~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~---~P~wl~~~--- 150 (287)
..+-++.+++.|+ +++=+++.|.+-.-.+ ...+|++.+--...+|++|+++|+++++.++-+- .|..-..+
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~-~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g 104 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWC-DFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKG 104 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcce-eeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCC
Confidence 4566788899994 4566777787533212 1256666666678999999999999988775322 22211110
Q ss_pred ----------c--------CC---CCChHHHHHHHHHHHHHHHHhCCCccE-EEEecCCc
Q 023097 151 ----------M--------GG---WLNKEIVKYFEIYADTCFASFGDRVKN-WITINEPL 188 (287)
Q Consensus 151 ----------~--------gg---w~~~~~~~~f~~ya~~v~~~~~d~V~~-w~t~NEP~ 188 (287)
+ ++ +.||+..+.|.+..+.+.+ +| |++ |+=+|||.
T Consensus 105 ~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~~ 161 (308)
T cd06593 105 YLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGERI 161 (308)
T ss_pred eEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCCC
Confidence 0 11 5688888888777776554 33 444 66688874
No 89
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=64.54 E-value=16 Score=33.28 Aligned_cols=57 Identities=11% Similarity=0.132 Sum_probs=40.6
Q ss_pred CcHHHHHHHHHcCCCccccccCcC-ccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEe
Q 023097 78 RYKEDIDLIAKLGFDAYRFSISWS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~-ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
.-+|.++.|+++|++.+-++++-+ .+.+.-.+ .. .++.+.+.++.++++||.+.+++
T Consensus 121 ~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~-~~---s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 121 LDPEQAKRLKDAGLDYYNHNLDTSQEFYSNIIS-TH---TYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred CCHHHHHHHHHcCCCEEEEcccCCHHHHhhccC-CC---CHHHHHHHHHHHHHcCCEEEEeE
Confidence 348899999999999999998821 12232111 22 36778899999999999866553
No 90
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=64.39 E-value=13 Score=37.49 Aligned_cols=57 Identities=21% Similarity=0.415 Sum_probs=39.9
Q ss_pred ccCcHHHHHHHHHcCCCccccccC--------------cCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 76 YHRYKEDIDLIAKLGFDAYRFSIS--------------WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~--------------W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
+.-..+-++-+++||++++=++=- ..+|.|.- | ..+=++++|++|+++||++|+++.
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~-G------t~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEF-G------TIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhh-C------CHHHHHHHHHHHHHCCCEEEEEec
Confidence 344556688999999998866521 12233321 2 246689999999999999999853
No 91
>PRK09505 malS alpha-amylase; Reviewed
Probab=64.36 E-value=14 Score=38.47 Aligned_cols=61 Identities=25% Similarity=0.420 Sum_probs=40.3
Q ss_pred cHHHHHHHHHcCCCccccccCcCccc-----------cC-C-CC------CccChh--HHHHHHHHHHHHHHCCCeeEEE
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIF-----------PD-G-LG------TKINME--GITFYNNIIDALLQKGIQPYVT 137 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~-----------P~-~-~g------~~~n~~--~~~~y~~~i~~l~~~GI~p~vt 137 (287)
..+-++-+++||++++=++=-...+. |. . .| ..+|+. ..+=++++|++++++||++|++
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45668899999999998773332221 10 0 01 012221 3566999999999999999998
Q ss_pred ec
Q 023097 138 LY 139 (287)
Q Consensus 138 L~ 139 (287)
+.
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 54
No 92
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=64.30 E-value=21 Score=34.08 Aligned_cols=94 Identities=12% Similarity=0.146 Sum_probs=60.6
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCC---CCCccChhHHHHHHHHHHHHHHCCCe-eEEEeccCCCcHHhHhhcCCC
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGW 154 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~---~g~~~n~~~~~~y~~~i~~l~~~GI~-p~vtL~h~~~P~wl~~~~ggw 154 (287)
-++.++.|+++|++.+-+++ .-+-++- -| +.. ..+-..+.++.+++.|+. +-++|- +++|.
T Consensus 102 ~~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~-R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg--------- 166 (370)
T PRK06294 102 SESYIRALALTGINRISIGV--QTFDDPLLKLLG-RTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT--------- 166 (370)
T ss_pred CHHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcC-CCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------
Confidence 46789999999999555444 2232221 02 211 145567889999999997 556665 55662
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCccEEEEecCCccc
Q 023097 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (287)
Q Consensus 155 ~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~~~ 190 (287)
++.+.|.+-.+.+.+.=-++|..+...=||+..
T Consensus 167 ---qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 ---QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred ---CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 235566666666665334678888888888854
No 93
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=64.23 E-value=44 Score=31.17 Aligned_cols=107 Identities=15% Similarity=0.212 Sum_probs=62.6
Q ss_pred HHHHHHHHcCCC--ccccccCcCccccCC--C-CCccChhHHHHHHHHHHHHHHCCCeeEEEeccC---CCcHHhH--hh
Q 023097 81 EDIDLIAKLGFD--AYRFSISWSRIFPDG--L-GTKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLH--ES 150 (287)
Q Consensus 81 eDi~l~~~lG~~--~~R~si~W~ri~P~~--~-g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~---~~P~wl~--~~ 150 (287)
+-++-+++.|+. ++=+++.|....... . ...+|++.+---.++|+.|+++|+++++.++-+ +.|..-. ++
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~ 107 (317)
T cd06598 28 DTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKA 107 (317)
T ss_pred HHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhC
Confidence 345555666654 555555664332210 0 123455455556789999999999999987644 2233211 00
Q ss_pred -c-------------------C---CCCChHHHHHHHHHHHHHHHHhCCCcc-EEEEecCCccc
Q 023097 151 -M-------------------G---GWLNKEIVKYFEIYADTCFASFGDRVK-NWITINEPLQT 190 (287)
Q Consensus 151 -~-------------------g---gw~~~~~~~~f~~ya~~v~~~~~d~V~-~w~t~NEP~~~ 190 (287)
+ + .+.||+..+.|.+..+.+ ... -|+ +|+=+|||...
T Consensus 108 g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~--Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 108 GALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQ--GVTGWWGDLGEPEVH 168 (317)
T ss_pred CCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhC--CccEEEecCCCcccc
Confidence 0 1 256888888887776665 222 344 48899999754
No 94
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=63.91 E-value=13 Score=38.91 Aligned_cols=56 Identities=21% Similarity=0.350 Sum_probs=39.4
Q ss_pred HHHHHHcCCCcccc----ccCcCccccCCCCC----------------c--cCh---hHHHHHHHHHHHHHHCCCeeEEE
Q 023097 83 IDLIAKLGFDAYRF----SISWSRIFPDGLGT----------------K--INM---EGITFYNNIIDALLQKGIQPYVT 137 (287)
Q Consensus 83 i~l~~~lG~~~~R~----si~W~ri~P~~~g~----------------~--~n~---~~~~~y~~~i~~l~~~GI~p~vt 137 (287)
|+-+|+||++++.+ ++...+-.++. |- . .++ ..+.=++.||++|.++||++|++
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~-gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKS-GLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHhCCceEEEecceEEecccccccc-ccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 99999999999984 33333333221 10 1 122 25778999999999999999998
Q ss_pred ec
Q 023097 138 LY 139 (287)
Q Consensus 138 L~ 139 (287)
+.
T Consensus 285 VV 286 (697)
T COG1523 285 VV 286 (697)
T ss_pred Ee
Confidence 64
No 95
>PLN02784 alpha-amylase
Probab=63.85 E-value=12 Score=39.86 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=45.2
Q ss_pred ccccCcHHHHHHHHHcCCCccccccCcCccccCCCC----CccChh--HHHHHHHHHHHHHHCCCeeEEEe
Q 023097 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG----TKINME--GITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 74 d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g----~~~n~~--~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
.+|....+.++-+++||++++=++=......+.|-. ..+|.. ..+=++.+|++|+++||++|+++
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467888999999999999998776433333222210 011211 23568999999999999999984
No 96
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=62.93 E-value=1.3e+02 Score=28.09 Aligned_cols=40 Identities=33% Similarity=0.395 Sum_probs=32.6
Q ss_pred ccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCC
Q 023097 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD 142 (287)
Q Consensus 102 ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~ 142 (287)
+..|...+ -++++.+..++++.+.++++|-+.++=|+|.+
T Consensus 62 ~~~~~~~~-~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~G 101 (336)
T cd02932 62 RITPGDLG-LWNDEQIEALKRIVDFIHSQGAKIGIQLAHAG 101 (336)
T ss_pred CCCCCcee-ecCHHHHHHHHHHHHHHHhcCCcEEEEccCCC
Confidence 44444335 56888999999999999999999999999954
No 97
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=62.62 E-value=38 Score=31.91 Aligned_cols=80 Identities=13% Similarity=0.059 Sum_probs=51.7
Q ss_pred cChhHHHHHHHHHHHHHHCCCeeEEEeccCCC-----cHHhHhh------------------------cCCCCChHHHHH
Q 023097 112 INMEGITFYNNIIDALLQKGIQPYVTLYHWDL-----PLHLHES------------------------MGGWLNKEIVKY 162 (287)
Q Consensus 112 ~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~-----P~wl~~~------------------------~ggw~~~~~~~~ 162 (287)
+|.+.+---..+|++|++.|+++++.++-+-. |..-... +-.+.||+..+.
T Consensus 58 ~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~w 137 (339)
T cd06603 58 WDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDW 137 (339)
T ss_pred eCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHH
Confidence 33333333477999999999999888764422 2221110 013678899999
Q ss_pred HHHHHHHHHHHhCC-CccEEEEecCCcccc
Q 023097 163 FEIYADTCFASFGD-RVKNWITINEPLQTA 191 (287)
Q Consensus 163 f~~ya~~v~~~~~d-~V~~w~t~NEP~~~~ 191 (287)
|.+..+.+....+. -+-.|+=+|||.++.
T Consensus 138 w~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 138 WASLFSYDKYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred HHHHHHHHhhcccCCCceEEeccCCccccC
Confidence 98888877654332 346689999998753
No 98
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=61.95 E-value=43 Score=32.15 Aligned_cols=72 Identities=25% Similarity=0.206 Sum_probs=52.5
Q ss_pred HHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHH
Q 023097 87 AKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIY 166 (287)
Q Consensus 87 ~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~y 166 (287)
.+.|++.+| |-| | .+-. --+..+.+++.++++|+-.=+..+|-.++.-+.++||+-.....++--.++
T Consensus 98 ~~~G~~~iR-------INP---G-Nig~-~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~ 165 (360)
T PRK00366 98 AEAGADALR-------INP---G-NIGK-RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRH 165 (360)
T ss_pred HHhCCCEEE-------ECC---C-CCCc-hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHH
Confidence 567888885 555 4 4421 026789999999999999999999999999999998653444455555555
Q ss_pred HHHH
Q 023097 167 ADTC 170 (287)
Q Consensus 167 a~~v 170 (287)
++.+
T Consensus 166 ~~~l 169 (360)
T PRK00366 166 AKIL 169 (360)
T ss_pred HHHH
Confidence 5544
No 99
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=61.24 E-value=26 Score=31.97 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEecc
Q 023097 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (287)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h 140 (287)
.+|++...+.|++.+|+++..+ .++-..++++.++++|+++.+++.+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~--------------~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH--------------EFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc--------------cHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 5789999999999999987321 2677889999999999999999865
No 100
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=61.03 E-value=41 Score=31.85 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=47.2
Q ss_pred ccChhHHHHHHHHHHHHHHCCCeeEEEeccCCC-cHHhHh--hcCCCCChHHHHHHHHHHHHHHHHhCCCccEEEEecCC
Q 023097 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHWDL-PLHLHE--SMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEP 187 (287)
Q Consensus 111 ~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~-P~wl~~--~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP 187 (287)
.+|.+.+---..++++|++.|++.++.+.-+-. -..... .+-.|.+|+..+.|.+..+.+.+ .| -.-.|+=+|||
T Consensus 57 t~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~G-v~~~W~DmnEp 134 (332)
T cd06601 57 TTNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IG-LEFVWQDMTTP 134 (332)
T ss_pred eecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CC-CceeecCCCCc
Confidence 334433333478999999999998887642110 000000 01246788888877666544432 23 23369999999
Q ss_pred ccccc
Q 023097 188 LQTAV 192 (287)
Q Consensus 188 ~~~~~ 192 (287)
.+...
T Consensus 135 ~~~~~ 139 (332)
T cd06601 135 AIMPS 139 (332)
T ss_pred ccccC
Confidence 97654
No 101
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=60.74 E-value=42 Score=32.53 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=40.8
Q ss_pred CcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
.|++||++.+++||+.|=+.|- .. . .+. .+....+++++.+.|.+.++++-
T Consensus 18 dw~~di~~A~~~GIDgFaLNig------~~-d-~~~---~~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 18 DWEADIRLAQAAGIDGFALNIG------SS-D-SWQ---PDQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred HHHHHHHHHHHcCCCEEEEecc------cC-C-ccc---HHHHHHHHHHHHhcCCEEEEEec
Confidence 4899999999999999777764 11 2 344 36788899999999999999864
No 102
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=60.65 E-value=40 Score=30.85 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=37.6
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
-++|++...+.|++.+|+++.-+. ++...+.++.++++|+++.+++.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~i~ 139 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGKHVEGAIC 139 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCeEEEEEE
Confidence 478899999999999998764222 46678889999999999887663
No 103
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=60.45 E-value=16 Score=38.63 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=54.4
Q ss_pred HHHHHHHcCCCccccccCcC---------------ccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEecc--CCC-
Q 023097 82 DIDLIAKLGFDAYRFSISWS---------------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH--WDL- 143 (287)
Q Consensus 82 Di~l~~~lG~~~~R~si~W~---------------ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h--~~~- 143 (287)
-++-+++||++++-+.=-.. .+.|.- | . .+-++++|++|.++||.+|+++.+ +.-
T Consensus 256 ~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~-G-t-----p~dlk~LVd~aH~~GI~VilDvV~nH~~~~ 328 (758)
T PLN02447 256 VLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS-G-T-----PEDLKYLIDKAHSLGLRVLMDVVHSHASKN 328 (758)
T ss_pred HHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc-C-C-----HHHHHHHHHHHHHCCCEEEEEecccccccc
Confidence 48999999999987652111 122211 2 2 245899999999999999999763 211
Q ss_pred ------------cHHhHhhcCC----C-------CChHHHHHHHHHHHHHHHHhC
Q 023097 144 ------------PLHLHESMGG----W-------LNKEIVKYFEIYADTCFASFG 175 (287)
Q Consensus 144 ------------P~wl~~~~gg----w-------~~~~~~~~f~~ya~~v~~~~~ 175 (287)
+.|......| | .++++...+.+-++.-+++|+
T Consensus 329 ~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 329 TLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred ccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1222211011 2 245677777777777777775
No 104
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=60.27 E-value=30 Score=33.01 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=43.7
Q ss_pred HHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEe
Q 023097 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
++.++++|.+++-+-+-|. |+.+. .+|...++...++.++|++.||..++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~-~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDD-AINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcch-HHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5778999999999998877 54312 4688889999999999999999999864
No 105
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=59.34 E-value=17 Score=40.56 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCCccccccCcCccc-c----CC-C---C------CccCh----hHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 81 EDIDLIAKLGFDAYRFSISWSRIF-P----DG-L---G------TKINM----EGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 81 eDi~l~~~lG~~~~R~si~W~ri~-P----~~-~---g------~~~n~----~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
+.|+-+|+||++++=+.=-..... . .+ . | ..+++ ...+=++++|++|+++||++|+++.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV 268 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVV 268 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEc
Confidence 568899999999987652111100 0 00 0 0 01111 1456799999999999999999853
No 106
>PRK12568 glycogen branching enzyme; Provisional
Probab=59.25 E-value=15 Score=38.57 Aligned_cols=90 Identities=22% Similarity=0.308 Sum_probs=55.6
Q ss_pred cHHH-HHHHHHcCCCccccc-c-------CcC-------ccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec--c
Q 023097 79 YKED-IDLIAKLGFDAYRFS-I-------SWS-------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY--H 140 (287)
Q Consensus 79 ~~eD-i~l~~~lG~~~~R~s-i-------~W~-------ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~--h 140 (287)
..+. ++-+++||++++=+. | +|- .+.|.- | . .+-+..+|++|+++||.+|+++. |
T Consensus 271 la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~-G-~-----~~dfk~lV~~~H~~Gi~VIlD~V~nH 343 (730)
T PRK12568 271 LAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARH-G-S-----PDGFAQFVDACHRAGIGVILDWVSAH 343 (730)
T ss_pred HHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCccc-C-C-----HHHHHHHHHHHHHCCCEEEEEecccc
Confidence 3344 688999999998654 2 342 112211 3 2 45689999999999999999964 4
Q ss_pred CCCcHH---------hHh----h---cCC-------CCChHHHHHHHHHHHHHHHHhC
Q 023097 141 WDLPLH---------LHE----S---MGG-------WLNKEIVKYFEIYADTCFASFG 175 (287)
Q Consensus 141 ~~~P~w---------l~~----~---~gg-------w~~~~~~~~f~~ya~~v~~~~~ 175 (287)
+..-.+ +.+ . +.. +.++++.+.+.+=+..-+++|+
T Consensus 344 ~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 344 FPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred CCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 431100 000 0 011 2356777777777777777775
No 107
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=58.89 E-value=24 Score=32.75 Aligned_cols=62 Identities=24% Similarity=0.517 Sum_probs=45.0
Q ss_pred cHHHHHHHHHcCCCccccccC----cCc---cccC------------CCCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 79 YKEDIDLIAKLGFDAYRFSIS----WSR---IFPD------------GLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~----W~r---i~P~------------~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
.++-|+.|+..++|.+.+-++ |+- ..|+ +.| .+.+ +=++++++.++++||++|.-+
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~-~yT~---~di~elv~yA~~rgI~viPEi- 92 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGG-FYTY---AQLKDIIEYAAARGIEVIPEI- 92 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCC-eECH---HHHHHHHHHHHHcCCEEEEec-
Confidence 567799999999999887765 521 1222 113 5564 447999999999999999987
Q ss_pred cCCCcHHh
Q 023097 140 HWDLPLHL 147 (287)
Q Consensus 140 h~~~P~wl 147 (287)
|+|.+.
T Consensus 93 --D~PGH~ 98 (303)
T cd02742 93 --DMPGHS 98 (303)
T ss_pred --cchHHH
Confidence 567654
No 108
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=57.79 E-value=9.4 Score=33.76 Aligned_cols=55 Identities=18% Similarity=0.436 Sum_probs=30.0
Q ss_pred ccCcHHHHHHHHHcCCCccccc-cC-c-----------------CccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEE
Q 023097 76 YHRYKEDIDLIAKLGFDAYRFS-IS-W-----------------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV 136 (287)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~s-i~-W-----------------~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~v 136 (287)
.-.-+.-++++++||.+++.|- +. - =++||+| | +| ++.+..+++.|+++|++-++
T Consensus 134 ~V~vetAiaml~dmG~~SiKffPm~Gl~~leE~~avAkA~a~~g~~lEPTG-G--Id---l~N~~~I~~i~l~aGv~~vi 207 (218)
T PF07071_consen 134 IVPVETAIAMLKDMGGSSIKFFPMGGLKHLEELKAVAKACARNGFTLEPTG-G--ID---LDNFEEIVKICLDAGVEKVI 207 (218)
T ss_dssp EEEHHHHHHHHHHTT--EEEE---TTTTTHHHHHHHHHHHHHCT-EEEEBS-S-------TTTHHHHHHHHHHTT-S-B-
T ss_pred cccHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceeCCcC-C--cC---HHHHHHHHHHHHHcCCCeec
Confidence 3456778999999999988752 11 0 0136664 4 55 56667777777777766443
No 109
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=57.72 E-value=17 Score=38.91 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=41.8
Q ss_pred cCcHHHHHHHHHcCCCcccccc---------------CcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 77 HRYKEDIDLIAKLGFDAYRFSI---------------SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si---------------~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
....+-+.-+++||++++=+|= ++.+|.|.- | +.+-+++++++++++||++|+++.
T Consensus 20 ~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l-G------t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 20 DDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL-G------GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC-C------CHHHHHHHHHHHHHCCCEEEEEec
Confidence 3466778889999999885552 344555553 4 245689999999999999999964
No 110
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=57.59 E-value=77 Score=29.58 Aligned_cols=80 Identities=13% Similarity=0.093 Sum_probs=48.9
Q ss_pred ccChhHHHHHHHHHHHHHHCCCeeEEEeccCC---CcHHhHhh-----------------------cCCCCChHHHHHHH
Q 023097 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHWD---LPLHLHES-----------------------MGGWLNKEIVKYFE 164 (287)
Q Consensus 111 ~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~---~P~wl~~~-----------------------~ggw~~~~~~~~f~ 164 (287)
.+|.+.+---.++|+.|+++|+++++.++-+- .+.+-..+ .-.+.||+..+.|.
T Consensus 59 ~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~ 138 (319)
T cd06591 59 KFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYW 138 (319)
T ss_pred EEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHH
Confidence 45555555568999999999999988764221 12111100 01256888877776
Q ss_pred HHHHHHHHHhCCCccEEEEecCCcccc
Q 023097 165 IYADTCFASFGDRVKNWITINEPLQTA 191 (287)
Q Consensus 165 ~ya~~v~~~~~d~V~~w~t~NEP~~~~ 191 (287)
+..+......| ---+|+=+|||....
T Consensus 139 ~~~~~~~~~~G-vdg~w~D~~Ep~~~~ 164 (319)
T cd06591 139 KQLKKNYYDKG-VDAWWLDAAEPEYSV 164 (319)
T ss_pred HHHHHHhhcCC-CcEEEecCCCCCccC
Confidence 65554443333 234588999998654
No 111
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=57.44 E-value=32 Score=36.44 Aligned_cols=100 Identities=20% Similarity=0.324 Sum_probs=64.2
Q ss_pred cCCCccccccC-cCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccC---CCcHH--hHhh------------
Q 023097 89 LGFDAYRFSIS-WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLH--LHES------------ 150 (287)
Q Consensus 89 lG~~~~R~si~-W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~---~~P~w--l~~~------------ 150 (287)
+-++.+++++. |.+ .-+ ...+|+.-+---+.+|+.|++.||+.++.+... +.|.- +.++
T Consensus 294 IP~d~~~lD~~~~~~--~~~-~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~ 370 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWG-DFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIY 370 (772)
T ss_pred CcceEEEEeehhhhc--ccc-ceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEe
Confidence 45678999995 887 222 235666666666799999999999999988632 22222 1111
Q ss_pred ----------cCCCCChHHHHHHHHHHHHHHHHhCCCccEEEEecCCccccc
Q 023097 151 ----------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAV 192 (287)
Q Consensus 151 ----------~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~~~~~ 192 (287)
+-.+.||+..+.|.+....-...+| -.-+|.=+|||.+...
T Consensus 371 ~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~ 421 (772)
T COG1501 371 QADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDG 421 (772)
T ss_pred eecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCccccc
Confidence 0126789999888873222222332 3556999999998654
No 112
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=57.37 E-value=33 Score=33.00 Aligned_cols=59 Identities=24% Similarity=0.184 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCccccccCcCccccCC-CCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
++|++.+.+.|++.+|+.++-|.+.-.. -+ .--++.++...+.++.+++.|+++.+++-
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~-~s~~~~l~~~~~~v~~a~~~G~~v~~~~e 137 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLK-KTREEVLERMVEAVEYAKDHGLYVSFSAE 137 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 7899999999999999998766653322 13 23456789999999999999999998864
No 113
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=57.33 E-value=42 Score=31.77 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=45.8
Q ss_pred HHHHHHHHHCCCeeEEEeccCCCc--------HHhHh--h-----------c-----------CCCCChHHHHHHHHHHH
Q 023097 121 NNIIDALLQKGIQPYVTLYHWDLP--------LHLHE--S-----------M-----------GGWLNKEIVKYFEIYAD 168 (287)
Q Consensus 121 ~~~i~~l~~~GI~p~vtL~h~~~P--------~wl~~--~-----------~-----------ggw~~~~~~~~f~~ya~ 168 (287)
.++|++|+++|+++++.++-+-.+ .+-.. + + -.+.||+..+.|.+..+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 889999999999999887644322 12110 0 0 12678888888877777
Q ss_pred HHHHHhCCCccEEEEecCCcc
Q 023097 169 TCFASFGDRVKNWITINEPLQ 189 (287)
Q Consensus 169 ~v~~~~~d~V~~w~t~NEP~~ 189 (287)
.+...+| -.-+|+=+|||..
T Consensus 149 ~~~~~~G-vdg~w~D~~Ep~~ 168 (339)
T cd06602 149 DFHDQVP-FDGLWIDMNEPSN 168 (339)
T ss_pred HHHhcCC-CcEEEecCCCCch
Confidence 6665554 2345889999964
No 114
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=57.14 E-value=31 Score=32.98 Aligned_cols=61 Identities=21% Similarity=0.164 Sum_probs=47.3
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCC-CCCccChhHHHHHHHHHHHHHHCCCeeEEEecc
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h 140 (287)
-.+|++.+.+.|++.+|+.++-|.+.-.. -+ .=..+.++...+.|+.+++.|+++.+++-.
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~-~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed 135 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLR-KDRAWVLERLARLVSFARDRGLFVSVGGED 135 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhC-cCHHHHHHHHHHHHHHHHhCCCEEEEeecC
Confidence 48999999999999999999876543332 12 223457888999999999999998887654
No 115
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=56.63 E-value=44 Score=32.91 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=48.3
Q ss_pred cHHHHHHHHHcCCCccccccC-cC-ccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCC
Q 023097 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLN 156 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~ 156 (287)
-++.+++|+++|++.+-++++ -+ ++...- +-..+ ++.+.+.++.++++||.+.+++- +++|. .+
T Consensus 286 ~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~-~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlPg---------et 351 (472)
T TIGR03471 286 DYETLKVMKENGLRLLLVGYESGDQQILKNI-KKGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLPG---------ET 351 (472)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHh-cCCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCCC---------CC
Confidence 356789999999998777773 21 111111 10123 46788999999999999888765 34451 34
Q ss_pred hHHHHHHHHHHHH
Q 023097 157 KEIVKYFEIYADT 169 (287)
Q Consensus 157 ~~~~~~f~~ya~~ 169 (287)
.+.+..-.+|+..
T Consensus 352 ~e~~~~ti~~~~~ 364 (472)
T TIGR03471 352 RETIRKTIDFAKE 364 (472)
T ss_pred HHHHHHHHHHHHh
Confidence 4545555555543
No 116
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=56.46 E-value=50 Score=31.49 Aligned_cols=86 Identities=20% Similarity=0.181 Sum_probs=58.7
Q ss_pred CcccccccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHh
Q 023097 70 DVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE 149 (287)
Q Consensus 70 ~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~ 149 (287)
-+|.-||+ |+-.+. ..+.|++.+|+ -| | .+-. -+..+.+++.++++|+-.=+..+|-.++.-+.+
T Consensus 75 lVADIHFd-~~lAl~-a~~~g~dkiRI-------NP---G-Nig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~ 139 (346)
T TIGR00612 75 LVADIHFD-YRLAAL-AMAKGVAKVRI-------NP---G-NIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLLE 139 (346)
T ss_pred EEEeeCCC-cHHHHH-HHHhccCeEEE-------CC---C-CCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHH
Confidence 34555654 333332 35668888874 34 4 3321 368899999999999999999999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHH
Q 023097 150 SMGGWLNKEIVKYFEIYADTC 170 (287)
Q Consensus 150 ~~ggw~~~~~~~~f~~ya~~v 170 (287)
+||+-..+..++--.++++.+
T Consensus 140 kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 140 KYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred HcCCCCHHHHHHHHHHHHHHH
Confidence 987644444555555555444
No 117
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=55.95 E-value=50 Score=32.79 Aligned_cols=97 Identities=19% Similarity=0.328 Sum_probs=58.6
Q ss_pred cHHH-HHHHHHcCCCccccc-------cCcCc-cccCCCC-CccC-------hhHHHHHHHHHHHHHHCCCeeEEEeccC
Q 023097 79 YKED-IDLIAKLGFDAYRFS-------ISWSR-IFPDGLG-TKIN-------MEGITFYNNIIDALLQKGIQPYVTLYHW 141 (287)
Q Consensus 79 ~~eD-i~l~~~lG~~~~R~s-------i~W~r-i~P~~~g-~~~n-------~~~~~~y~~~i~~l~~~GI~p~vtL~h~ 141 (287)
++.| +.++|+|-+..+|+. ..|.. |-|...= ..+| ...+ -..++++.|+..|.+|++.++=
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~-Gt~EF~~~~e~iGaep~~avN~- 127 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEF-GTHEFMDWCELIGAEPYIAVNL- 127 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccc-cHHHHHHHHHHhCCceEEEEec-
Confidence 5666 688899999988853 23432 2222100 0111 0001 1468999999999999999862
Q ss_pred CCcHHhHhhcCCCCChHHHHHHHHHHHH--------HHHHhCC----CccEEEEecCCc
Q 023097 142 DLPLHLHESMGGWLNKEIVKYFEIYADT--------CFASFGD----RVKNWITINEPL 188 (287)
Q Consensus 142 ~~P~wl~~~~ggw~~~~~~~~f~~ya~~--------v~~~~~d----~V~~w~t~NEP~ 188 (287)
|. ...+....|.+||-. .=+..|. .|+||.+=||..
T Consensus 128 ----------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~ 175 (501)
T COG3534 128 ----------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMD 175 (501)
T ss_pred ----------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccC
Confidence 11 233556677777632 3334443 499999999974
No 118
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=55.77 E-value=49 Score=31.50 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=60.9
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCC---CCCccChhHHHHHHHHHHHHHHCCCe-eEEEeccCCCcHHhHhhcCCC
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGW 154 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~---~g~~~n~~~~~~y~~~i~~l~~~GI~-p~vtL~h~~~P~wl~~~~ggw 154 (287)
-++.+++|+++|++.+-++++ ..-++- -| +. ...+-..+.++.+++.|+. +.++|- +++|.
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQ--S~~~~~L~~l~-R~--~s~~~~~~a~~~l~~~g~~~v~~dli-~GlPg--------- 171 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQ--SAAPHVLAVLD-RT--HTPGRAVAAAREARAAGFEHVNLDLI-YGTPG--------- 171 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecc--cCCHHHHHHcC-CC--CCHHHHHHHHHHHHHcCCCcEEEEEe-ccCCC---------
Confidence 468899999999986555552 222221 02 11 1256678899999999998 667764 45552
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCccEEEEecCCccccccCccccccC
Q 023097 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFA 201 (287)
Q Consensus 155 ~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~~~~~~gy~~g~~~ 201 (287)
. +.+.|.+=.+.+.+.=-++|..+...=||+.....-+..|.++
T Consensus 172 q---t~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g~~~ 215 (375)
T PRK05628 172 E---SDDDWRASLDAALEAGVDHVSAYALIVEDGTALARRVRRGELP 215 (375)
T ss_pred C---CHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcCCCC
Confidence 2 2344444444444322256766666667776543333344443
No 119
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=55.66 E-value=54 Score=34.79 Aligned_cols=102 Identities=16% Similarity=0.271 Sum_probs=65.0
Q ss_pred HHHHHHcCCC--ccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec---cCCCc-----------HH
Q 023097 83 IDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY---HWDLP-----------LH 146 (287)
Q Consensus 83 i~l~~~lG~~--~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~---h~~~P-----------~w 146 (287)
++.+.++|+. ..=..|.|-.-.. .+.+|+..+-....+++.|+++|++.++.+. +-+.. .|
T Consensus 317 v~~~~~agiPld~~~~DiDyMd~yk---DFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v~ 393 (805)
T KOG1065|consen 317 VENYRAAGIPLDVIVIDIDYMDGYK---DFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDVL 393 (805)
T ss_pred HHHHHHcCCCcceeeeehhhhhccc---ceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhcee
Confidence 5667778877 4444444432222 2367877778899999999999999999987 22221 01
Q ss_pred hHh----------hcCC------CCChHHHHHHHHHHHHHHHHhCCCcc---EEEEecCCcccc
Q 023097 147 LHE----------SMGG------WLNKEIVKYFEIYADTCFASFGDRVK---NWITINEPLQTA 191 (287)
Q Consensus 147 l~~----------~~gg------w~~~~~~~~f~~ya~~v~~~~~d~V~---~w~t~NEP~~~~ 191 (287)
+.+ -..| ++|+++++. +...+++|.+.|. +|+-+|||.-.+
T Consensus 394 I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~W----w~~~~~~fh~~vp~dg~wiDmnE~snf~ 453 (805)
T KOG1065|consen 394 IKNREGSPKMLGEVWPGSTAFPDFTNPAVVEW----WLDELKRFHDEVPFDGFWIDMNEPSNFP 453 (805)
T ss_pred eecccCchhhhcccCCCcccccccCCchHHHH----HHHHHHhhcccCCccceEEECCCcccCC
Confidence 111 0112 556655544 4445668888876 599999997654
No 120
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=54.60 E-value=30 Score=30.71 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=38.9
Q ss_pred cCcHHHHHHHHHcCCCccccccCcCccccCCCC-CccChhHHHHHHHHHHHHHHCCCeeEEEe
Q 023097 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG-TKINMEGITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g-~~~n~~~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
+.+++-+++++++|.+.+|+..... |.... .+.....++...++.+.+.+.||...+=.
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4566778999999999998644321 11100 02223345678888888999999988753
No 121
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=54.45 E-value=2e+02 Score=27.28 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=76.2
Q ss_pred ccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHH----------hHhhcCCC----CC----hHHHHHHHHHHHHHHH
Q 023097 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLH----------LHESMGGW----LN----KEIVKYFEIYADTCFA 172 (287)
Q Consensus 111 ~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~w----------l~~~~ggw----~~----~~~~~~f~~ya~~v~~ 172 (287)
-++++.+..++++.+.++++|-.+++=|.|.+.-.. +.....+- .+ .++++.|++=|+.+.+
T Consensus 74 ~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~ 153 (337)
T PRK13523 74 IWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKE 153 (337)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 568888999999999999999999999999653110 00000000 11 1467778776655544
Q ss_pred HhC-CCccEEEEecCCccccccCcccccc-CCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCc
Q 023097 173 SFG-DRVKNWITINEPLQTAVNGYCTGIF-APGR-HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCE 249 (287)
Q Consensus 173 ~~~-d~V~~w~t~NEP~~~~~~gy~~g~~-~p~~-~~~~~~~~~~~~hn~l~AHa~a~~~~r~~~~~~~~~kIG~~~~~~ 249 (287)
-| |-|. +.+-.||+...| .|.. +..+. .--.+-|=+.--...++.+|+.. +..||+-++..
T Consensus 154 -aGfDgVe---------ih~ahGyLl~qFlSp~~N~RtD~--yGGslenR~Rf~~eii~~ir~~~----~~~v~vRis~~ 217 (337)
T PRK13523 154 -AGFDVIE---------IHGAHGYLINEFLSPLSNKRTDE--YGGSPENRYRFLREIIDAVKEVW----DGPLFVRISAS 217 (337)
T ss_pred -cCCCEEE---------EccccchHHHHhcCCccCCcCCC--CCCCHHHHHHHHHHHHHHHHHhc----CCCeEEEeccc
Confidence 33 2232 334557776654 3432 11111 11124444454556667777653 45688877765
Q ss_pred eeeeCCCCHHHH
Q 023097 250 WAEANSDKIEDK 261 (287)
Q Consensus 250 ~~~P~~~~p~Dv 261 (287)
.+.+...+++|.
T Consensus 218 d~~~~G~~~~e~ 229 (337)
T PRK13523 218 DYHPGGLTVQDY 229 (337)
T ss_pred ccCCCCCCHHHH
Confidence 554443455554
No 122
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=53.54 E-value=37 Score=30.99 Aligned_cols=61 Identities=11% Similarity=0.124 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCccccccCcCccccCC-CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccC
Q 023097 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW 141 (287)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~ 141 (287)
+.+++.+++.|++.+|+.++=|...-.. .| .-.++.++...+.++.+++.|+++.++.-+|
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~-~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~ 142 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALG-TTLEENLAMIRDSVAYLKSHGREVIFDAEHF 142 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcCCeEEEeEEec
Confidence 3689999999999999987644332221 13 2235678999999999999999998876555
No 123
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=53.49 E-value=38 Score=32.38 Aligned_cols=83 Identities=17% Similarity=0.259 Sum_probs=61.3
Q ss_pred cccccCcHHHHHHHHHcCCCccccccCcCccccCC----CC-CccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHh
Q 023097 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDG----LG-TKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHL 147 (287)
Q Consensus 73 ~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~----~g-~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl 147 (287)
++.+-.-++=++.++++|++-+-+|++ -+-|.. .| ..+| +++..++.+.+.+.||.++++ |.|+
T Consensus 197 Tng~~L~~~lv~eLeeAGLdRiNlSv~--aLDpk~Ak~L~G~~dYd---v~kvle~aE~i~~a~idvlIa------Pv~l 265 (414)
T COG2100 197 TNGVLLSKKLVDELEEAGLDRINLSVD--ALDPKLAKMLAGRKDYD---VKKVLEVAEYIANAGIDVLIA------PVWL 265 (414)
T ss_pred eCceeccHHHHHHHHHhCCceEEeecc--cCCHHHHHHhcCccccC---HHHHHHHHHHHHhCCCCEEEe------eeec
Confidence 444556677799999999998777764 344432 13 1345 889999999999999999985 7887
Q ss_pred HhhcCCCCChHHHHHHHHHHHHHH
Q 023097 148 HESMGGWLNKEIVKYFEIYADTCF 171 (287)
Q Consensus 148 ~~~~ggw~~~~~~~~f~~ya~~v~ 171 (287)
- | .|.+-...+.+||+.+-
T Consensus 266 P----G-~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 266 P----G-VNDDEMPKIIEWAREIG 284 (414)
T ss_pred C----C-cChHHHHHHHHHHHHhC
Confidence 3 3 56666888889988875
No 124
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=53.40 E-value=49 Score=30.31 Aligned_cols=85 Identities=12% Similarity=0.097 Sum_probs=58.9
Q ss_pred CcHHHHHHHHHcCCCccccccCcCccccCC-CCCccChhHHHHHHHHHHHHHHCCCeeEEEec-cCCCcHHhHhhcCCCC
Q 023097 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLY-HWDLPLHLHESMGGWL 155 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~-h~~~P~wl~~~~ggw~ 155 (287)
.-.+|++...+.|++.+++.++=|...-.. -+ .-..+.++...+.++.++++|+++.+++. .|+.| +.+-.
T Consensus 74 ~~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~-~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~------~~~~~ 146 (274)
T cd07938 74 PNLRGAERALAAGVDEVAVFVSASETFSQKNIN-CSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP------YEGEV 146 (274)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC------CCCCC
Confidence 357899999999999999998655432221 13 22356789999999999999999998876 34444 12222
Q ss_pred ChHHHHHHHHHHHHHHH
Q 023097 156 NKEIVKYFEIYADTCFA 172 (287)
Q Consensus 156 ~~~~~~~f~~ya~~v~~ 172 (287)
..+.+.++++.+.+
T Consensus 147 ---~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 ---PPERVAEVAERLLD 160 (274)
T ss_pred ---CHHHHHHHHHHHHH
Confidence 35566666666654
No 125
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=52.90 E-value=23 Score=37.79 Aligned_cols=58 Identities=21% Similarity=0.235 Sum_probs=42.0
Q ss_pred CcHHHHHHHHHcCCCccccccC---------------cCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEe--cc
Q 023097 78 RYKEDIDLIAKLGFDAYRFSIS---------------WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL--YH 140 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~---------------W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL--~h 140 (287)
...+-++-+++||++++=+|=- +.+|.|.- | +.+-+++++++|+++||.+|+++ +|
T Consensus 17 ~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l-G------t~edf~~Lv~aah~~Gm~vIlDiVpNH 89 (825)
T TIGR02401 17 DAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL-G------GEEGLRRLSEAARARGLGLIVDIVPNH 89 (825)
T ss_pred HHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC-C------CHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 3667788999999998866532 23344432 3 35668999999999999999995 35
Q ss_pred CC
Q 023097 141 WD 142 (287)
Q Consensus 141 ~~ 142 (287)
..
T Consensus 90 ~a 91 (825)
T TIGR02401 90 MA 91 (825)
T ss_pred cc
Confidence 43
No 126
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=52.89 E-value=31 Score=36.10 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=36.5
Q ss_pred HHHHHHcCCCccccc-c-CcCc--------------cccCCCCCccChh-----HHHHHHHHHHHHHHCCCeeEEEec
Q 023097 83 IDLIAKLGFDAYRFS-I-SWSR--------------IFPDGLGTKINME-----GITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 83 i~l~~~lG~~~~R~s-i-~W~r--------------i~P~~~g~~~n~~-----~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
|+-+|+||++++=+. | +..- --|.. -..++.. .++=++++|++|+++||++|+++.
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~-y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLG-FFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCccc-ccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 789999999998766 2 2210 00110 0012211 245699999999999999999964
No 127
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=52.69 E-value=36 Score=30.86 Aligned_cols=59 Identities=20% Similarity=0.071 Sum_probs=43.3
Q ss_pred cHHHHHHHHHcC----CCccccccCcCccc--cCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 79 YKEDIDLIAKLG----FDAYRFSISWSRIF--PDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 79 ~~eDi~l~~~lG----~~~~R~si~W~ri~--P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
-.+|++...+.| ++.+|+.++-+.+. -.- + .=..+.++-..++++.+++.|+++.+++.
T Consensus 71 ~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~-~-~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 135 (268)
T cd07940 71 VKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKL-K-KTREEVLERAVEAVEYAKSHGLDVEFSAE 135 (268)
T ss_pred CHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHh-C-CCHHHHHHHHHHHHHHHHHcCCeEEEeee
Confidence 378999999999 99999977655442 221 3 22234678888999999999998776653
No 128
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=51.12 E-value=52 Score=31.32 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=56.4
Q ss_pred cHHHHHHHHHcCCCccccccC--cCccccCCCCCccChhHHHHHHHHHHHHHHCCCee-EEEeccCCCcHHhHhhcCCCC
Q 023097 79 YKEDIDLIAKLGFDAYRFSIS--WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQP-YVTLYHWDLPLHLHESMGGWL 155 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~--W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p-~vtL~h~~~P~wl~~~~ggw~ 155 (287)
-++.+++|+++|++.+-++++ -.++...- +-..+ .+-..+.++.+++.|+.. .+++- +++|. .
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l-~r~~~---~~~~~~~i~~l~~~g~~~v~~dli-~GlPg---------q 164 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKI-GRTHN---EEDVYEAIANAKKAGFDNISIDLI-YALPG---------Q 164 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCcEEEeee-cCCCC---------C
Confidence 468899999999996666653 12232221 20223 567889999999999974 34443 45552 2
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCccEEEEecCCcccc
Q 023097 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTA 191 (287)
Q Consensus 156 ~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~~~~ 191 (287)
+ .+.|.+-.+.+.+.=-+.|..+...-+|+...
T Consensus 165 t---~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~ 197 (377)
T PRK08599 165 T---IEDFKESLAKALALDIPHYSAYSLILEPKTVF 197 (377)
T ss_pred C---HHHHHHHHHHHHccCCCEEeeeceeecCCChh
Confidence 3 33444444444332234566666566777543
No 129
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=51.06 E-value=38 Score=38.97 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=40.1
Q ss_pred cHHHHHHHHHcCCCccccccC---------------cCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 79 YKEDIDLIAKLGFDAYRFSIS---------------WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~---------------W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
..+-++-+++||++++=+|=- +.+|.|.- | +.+-+++++++|+++||.+|+++.
T Consensus 760 ~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l-G------~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 760 AEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI-G------GEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred HHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc-C------CHHHHHHHHHHHHHCCCEEEEEec
Confidence 455688899999999865532 33444443 3 345689999999999999999963
No 130
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=51.01 E-value=72 Score=30.23 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=48.6
Q ss_pred HHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCc
Q 023097 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (287)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P 144 (287)
.+.++++|.+++.|=+=|. |+++. .+|..-.++.+++.++|++.+|--++-+..++.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~-~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPD-EINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCH-HHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 6789999999999988776 55434 6888889999999999999999999988765543
No 131
>PRK14706 glycogen branching enzyme; Provisional
Probab=50.68 E-value=23 Score=36.65 Aligned_cols=90 Identities=18% Similarity=0.312 Sum_probs=52.2
Q ss_pred HHHHHcCCCccccc-c-------CcCccccCCCCCccCh--hHHHHHHHHHHHHHHCCCeeEEEec--cCCC--------
Q 023097 84 DLIAKLGFDAYRFS-I-------SWSRIFPDGLGTKINM--EGITFYNNIIDALLQKGIQPYVTLY--HWDL-------- 143 (287)
Q Consensus 84 ~l~~~lG~~~~R~s-i-------~W~ri~P~~~g~~~n~--~~~~~y~~~i~~l~~~GI~p~vtL~--h~~~-------- 143 (287)
+-+|+||++++-+. | +|-- .|..- ..++. -..+=++.+|++|.++||++|+++. |+..
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY-~~~~~-~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~ 252 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGY-QVTGY-YAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHF 252 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCc-Ccccc-cccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhcc
Confidence 66899999998765 2 1210 00000 00111 0134589999999999999999854 5421
Q ss_pred ---cHHh-HhhcCC----C-------CChHHHHHHHHHHHHHHHHhC
Q 023097 144 ---PLHL-HESMGG----W-------LNKEIVKYFEIYADTCFASFG 175 (287)
Q Consensus 144 ---P~wl-~~~~gg----w-------~~~~~~~~f~~ya~~v~~~~~ 175 (287)
|.+- .+...| | .++++.+.+.+=++.-++.|+
T Consensus 253 dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 253 DGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1110 000011 2 256778888888888888776
No 132
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=50.37 E-value=52 Score=32.59 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=40.6
Q ss_pred cccCc-----HHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCc
Q 023097 75 HYHRY-----KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (287)
Q Consensus 75 ~~~~~-----~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P 144 (287)
.|.+| ++|++...+.|++.+|+.++-+.+ .-....|+.+++.|+.+.+++..-+.|
T Consensus 89 G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 89 GYRNYADDVVESFVQKSVENGIDIIRIFDALNDV--------------RNLETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred ccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCeEEEEEEeecCC
Confidence 45555 456799999999999998754333 125568899999999888777654445
No 133
>PLN02960 alpha-amylase
Probab=49.66 E-value=29 Score=37.22 Aligned_cols=94 Identities=11% Similarity=0.264 Sum_probs=58.0
Q ss_pred cccCcHHH-HHHHHHcCCCccccc-cC-------c-------CccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEe
Q 023097 75 HYHRYKED-IDLIAKLGFDAYRFS-IS-------W-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 75 ~~~~~~eD-i~l~~~lG~~~~R~s-i~-------W-------~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
.|.-..+. ++-+++||++++=+. |. | -.+.|.- | . .+=++.+|++|.++||.+|+++
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y-G-t-----p~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF-G-T-----PDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc-C-C-----HHHHHHHHHHHHHCCCEEEEEe
Confidence 34444444 899999999998765 21 1 1111111 2 2 3458999999999999999997
Q ss_pred --ccCCC--c--HHhHhh-------------cCCC-------CChHHHHHHHHHHHHHHHHhC
Q 023097 139 --YHWDL--P--LHLHES-------------MGGW-------LNKEIVKYFEIYADTCFASFG 175 (287)
Q Consensus 139 --~h~~~--P--~wl~~~-------------~ggw-------~~~~~~~~f~~ya~~v~~~~~ 175 (287)
.|+.. + .+..+. ...| .++++.+.+.+=++.-++.|+
T Consensus 487 V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 487 VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred cccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 35431 1 010000 0012 256778888888888888886
No 134
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=49.60 E-value=51 Score=29.50 Aligned_cols=79 Identities=11% Similarity=0.170 Sum_probs=45.9
Q ss_pred cccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHh--H-----------------hhc--CC-
Q 023097 96 FSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHL--H-----------------ESM--GG- 153 (287)
Q Consensus 96 ~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl--~-----------------~~~--gg- 153 (287)
+.+.|..+.++|.. .... ....+..+++.++++|+++++++..+...... . .+| .|
T Consensus 26 v~~~f~~i~~~G~l-~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv~~~~~~~~DGI 103 (253)
T cd06545 26 INLAFANPDANGTL-NANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKIINYVVSYNLDGI 103 (253)
T ss_pred EEEEEEEECCCCeE-EecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHHHHHHHhCCCce
Confidence 44556666555421 1211 12456788999999999999998766543211 0 012 23
Q ss_pred ---CCChHH-HHHHHHHHHHHHHHhCC
Q 023097 154 ---WLNKEI-VKYFEIYADTCFASFGD 176 (287)
Q Consensus 154 ---w~~~~~-~~~f~~ya~~v~~~~~d 176 (287)
|+.+.. .+.|..+.+.+-+.+..
T Consensus 104 diDwE~~~~~~~~~~~fv~~Lr~~l~~ 130 (253)
T cd06545 104 DVDLEGPDVTFGDYLVFIRALYAALKK 130 (253)
T ss_pred eEEeeccCccHhHHHHHHHHHHHHHhh
Confidence 544322 46777777777777743
No 135
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=48.83 E-value=75 Score=30.82 Aligned_cols=108 Identities=18% Similarity=0.208 Sum_probs=65.1
Q ss_pred cHHHHHHHHHcCCC--ccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccC---CCc---HHhHhh
Q 023097 79 YKEDIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLP---LHLHES 150 (287)
Q Consensus 79 ~~eDi~l~~~lG~~--~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~---~~P---~wl~~~ 150 (287)
..+-++.+++.|+. ++=++..|..-.. +- .+|.+.+.-..++++.|+++|+++++.++-+ +.+ ..-..+
T Consensus 45 v~~~i~~~~~~~iP~d~~~iD~~~~~~~~--~f-~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~ 121 (441)
T PF01055_consen 45 VREVIDRYRSNGIPLDVIWIDDDYQDGYG--DF-TWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAK 121 (441)
T ss_dssp HHHHHHHHHHTT--EEEEEE-GGGSBTTB--TT--B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHH
T ss_pred HHHHHHHHHHcCCCccceecccccccccc--cc-ccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHh
Confidence 44556777777765 4444455655322 12 6777666678999999999999988876522 112 111100
Q ss_pred --------cCC----------------CCChHHHHHHHHHHHHHHHHhCCCccEEEEecCCccc
Q 023097 151 --------MGG----------------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (287)
Q Consensus 151 --------~gg----------------w~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~~~ 190 (287)
..| +.+++..+.|.+..+.+.+.+| ---+|+=+|||..+
T Consensus 122 ~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 184 (441)
T PF01055_consen 122 EKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG-VDGWWLDFGEPSSF 184 (441)
T ss_dssp HTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred hcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC-CceEEeecCCcccc
Confidence 012 6788888888887777776654 23458899999974
No 136
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=48.41 E-value=84 Score=29.86 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=49.0
Q ss_pred HHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCC
Q 023097 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL 143 (287)
Q Consensus 82 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~ 143 (287)
..+.++++|.+++.|=+=|. |+++- .+|..-.++.+++.++|++.+|--++-+..++.
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~-ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~ 169 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDE-EINDQKQAYIERIGSECTAEDIPFFLELLTYDE 169 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCH-HHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 57889999999999988776 55433 688888999999999999999999998877653
No 137
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=48.15 E-value=1.6e+02 Score=27.92 Aligned_cols=93 Identities=13% Similarity=0.055 Sum_probs=59.9
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEe--ccCCCcHHhHhh------
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL--YHWDLPLHLHES------ 150 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL--~h~~~P~wl~~~------ 150 (287)
..+|++...+.|++.+|+....+.. +-..+.|+.+++.|+++.+.+ .|...|..+.+.
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~--------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~ 154 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEA--------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMES 154 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchH--------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHh
Confidence 4689999999999999987642221 235788999999999998877 344445544331
Q ss_pred c----------CCCCChHHHHHHHHHHHHHHHHhCCCccE-EEEecCCc
Q 023097 151 M----------GGWLNKEIVKYFEIYADTCFASFGDRVKN-WITINEPL 188 (287)
Q Consensus 151 ~----------ggw~~~~~~~~f~~ya~~v~~~~~d~V~~-w~t~NEP~ 188 (287)
+ .|-.. ++...++.+.+-+.+++.++. +-.-|-..
T Consensus 155 ~Ga~~i~i~DT~G~~~---P~~v~~~v~~l~~~l~~~i~ig~H~HnnlG 200 (333)
T TIGR03217 155 YGADCVYIVDSAGAML---PDDVRDRVRALKAVLKPETQVGFHAHHNLS 200 (333)
T ss_pred cCCCEEEEccCCCCCC---HHHHHHHHHHHHHhCCCCceEEEEeCCCCc
Confidence 1 23333 445666666666777644433 33445444
No 138
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=47.55 E-value=43 Score=31.76 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=55.1
Q ss_pred cHHHHHHHHHcCCCccccccC-cC-ccccCCCCCccChhHHHHHHHHHHHHHHCCCee-EEEeccCCCcHHhHhhcCCCC
Q 023097 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQP-YVTLYHWDLPLHLHESMGGWL 155 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p-~vtL~h~~~P~wl~~~~ggw~ 155 (287)
-++.++.|+++|++.+-++++ -+ ++...- | +.. ..+-+.+.|+.+++.|+.+ -++|- +++|. .
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS~~~~~l~~l-g-R~~--~~~~~~~ai~~l~~~G~~~v~~dli-~GlPg---------q 164 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQSFRDDKLLFL-G-RQH--SAKNIAPAIETALKSGIENISLDLM-YGLPL---------Q 164 (360)
T ss_pred CHHHHHHHHHcCCCEEEEecccCChHHHHHh-C-CCC--CHHHHHHHHHHHHHcCCCeEEEecc-CCCCC---------C
Confidence 468899999999986555553 21 222222 3 211 2567888999999999975 45554 55652 2
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCccEEEEecCCcc
Q 023097 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (287)
Q Consensus 156 ~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~~ 189 (287)
+ .+.+.+-.+.+.+.=-+++..+...=||+.
T Consensus 165 t---~~~~~~~l~~~~~l~~~~is~y~l~~~~gT 195 (360)
T TIGR00539 165 T---LNSLKEELKLAKELPINHLSAYALSVEPNT 195 (360)
T ss_pred C---HHHHHHHHHHHHccCCCEEEeecceEcCCC
Confidence 2 334444444444322245666655556653
No 139
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=47.52 E-value=55 Score=30.41 Aligned_cols=62 Identities=21% Similarity=0.208 Sum_probs=44.3
Q ss_pred cHHHHHHHHHcCCCccccc----cCcCccccCC---CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhH
Q 023097 79 YKEDIDLIAKLGFDAYRFS----ISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH 148 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~s----i~W~ri~P~~---~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~ 148 (287)
.++-|++|+.+|+|.+-+- +.++. .|.- .| .+.. +=++++++.++++||+++..+ ++|.++.
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~-~yT~---~ei~ei~~yA~~~gI~vIPei---d~pGH~~ 87 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRG-AYTK---EEIREIDDYAAELGIEVIPLI---QTLGHLE 87 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCC-CcCH---HHHHHHHHHHHHcCCEEEecC---CCHHHHH
Confidence 6778999999999987763 33322 2221 25 6665 447999999999999999987 4565543
No 140
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=47.45 E-value=34 Score=33.21 Aligned_cols=51 Identities=25% Similarity=0.518 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCCccccc-c-------------CcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEe
Q 023097 81 EDIDLIAKLGFDAYRFS-I-------------SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 81 eDi~l~~~lG~~~~R~s-i-------------~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
+-++.+++||++++=++ | .+.+|.|.- | .++-.++++++++++||++++++
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~-G------t~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHF-G------TEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCccc-C------CHHHHHHHHHHHHHCCCEEEEEe
Confidence 66889999999998444 1 122233321 2 36778999999999999999998
No 141
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=47.39 E-value=55 Score=29.57 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=38.0
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
..+|++...+.|++.+|+.++-+.+ .-..++++.+++.|+++.+++.
T Consensus 87 ~~~~i~~a~~~g~~~iri~~~~s~~--------------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 87 TVDDLKMAADLGVDVVRVATHCTEA--------------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred CHHHHHHHHHcCCCEEEEEechhhH--------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 4699999999999999987754432 2357789999999999999884
No 142
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=47.04 E-value=57 Score=33.44 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCc
Q 023097 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (287)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P 144 (287)
++|++..++.|++.+|+..+.+.+ +-....++.++++|+.+.+++..-..|
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 144 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAHAQGTISYTTSP 144 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCEEEEEEEeccCC
Confidence 445899999999999988654432 235667788888898888877654455
No 143
>PRK05660 HemN family oxidoreductase; Provisional
Probab=46.98 E-value=70 Score=30.67 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=58.1
Q ss_pred cHHHHHHHHHcCCCccccccC-cC-ccccCCCCCccChhHHHHHHHHHHHHHHCCCeeE-EEeccCCCcHHhHhhcCCCC
Q 023097 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWL 155 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~-vtL~h~~~P~wl~~~~ggw~ 155 (287)
-++.++.|+++|++.+-++++ -+ .+...- | ... ..+-..+.++.+++.|+.++ ++|- +++|.
T Consensus 106 ~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l-~-r~~--~~~~~~~ai~~~~~~G~~~v~~dli-~Glpg---------- 170 (378)
T PRK05660 106 EADRFVGYQRAGVNRISIGVQSFSEEKLKRL-G-RIH--GPDEAKRAAKLAQGLGLRSFNLDLM-HGLPD---------- 170 (378)
T ss_pred CHHHHHHHHHcCCCEEEeccCcCCHHHHHHh-C-CCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 458899999999996555552 11 111111 2 221 24566788999999999864 6664 56662
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCccEEEEecCCcc
Q 023097 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (287)
Q Consensus 156 ~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~~ 189 (287)
++.+.+.+-.+.+.+.=-+++..+...=||+.
T Consensus 171 --qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 171 --QSLEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred --CCHHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 23445555555555533467777777777764
No 144
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=46.80 E-value=53 Score=31.72 Aligned_cols=94 Identities=19% Similarity=0.383 Sum_probs=57.9
Q ss_pred HcCCCccccccCcCccccCCCCCccChhHHHHHHHH--HHHHHHCCCeeEEEeccCCCcHHhHhhc---CC---CCChHH
Q 023097 88 KLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNI--IDALLQKGIQPYVTLYHWDLPLHLHESM---GG---WLNKEI 159 (287)
Q Consensus 88 ~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~--i~~l~~~GI~p~vtL~h~~~P~wl~~~~---gg---w~~~~~ 159 (287)
++|+...|+.|.=.+.--. | .+| .+|+++ -...++.|+++|.+- |..|.|+.... || -+.++-
T Consensus 77 ~lg~si~Rv~I~~ndfsl~--g-~~d----~w~kels~Ak~~in~g~ivfASP--WspPa~Mktt~~~ngg~~g~Lk~e~ 147 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG--G-SAD----NWYKELSTAKSAINPGMIVFASP--WSPPASMKTTNNRNGGNAGRLKYEK 147 (433)
T ss_pred ccCceEEEEEecccccccC--C-Ccc----hhhhhcccchhhcCCCcEEEecC--CCCchhhhhccCcCCccccccchhH
Confidence 4788888887764443221 4 555 233333 233678899999876 78999987531 33 445554
Q ss_pred HHHHHHHHHHHHHHhCC---CccEEEEecCCccc
Q 023097 160 VKYFEIYADTCFASFGD---RVKNWITINEPLQT 190 (287)
Q Consensus 160 ~~~f~~ya~~v~~~~~d---~V~~w~t~NEP~~~ 190 (287)
-..|++|-...+..+++ -+.+--+=|||.-.
T Consensus 148 Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~ 181 (433)
T COG5520 148 YADYADYLNDFVLEMKNNGVNLYALSVQNEPDYA 181 (433)
T ss_pred hHHHHHHHHHHHHHHHhCCCceeEEeeccCCccc
Confidence 44455554455555554 36667789999865
No 145
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=46.62 E-value=3.5e+02 Score=28.58 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=90.9
Q ss_pred HHHHcCCCccccc---c-CcCccccCCCCCccChhHHHHHHHHHHHHHHC-CCeeEEEeccCCC-----cHHhHh----h
Q 023097 85 LIAKLGFDAYRFS---I-SWSRIFPDGLGTKINMEGITFYNNIIDALLQK-GIQPYVTLYHWDL-----PLHLHE----S 150 (287)
Q Consensus 85 l~~~lG~~~~R~s---i-~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~-GI~p~vtL~h~~~-----P~wl~~----~ 150 (287)
..++-|+..+=.. + .-.++.|...| -++++-+..++++++.++++ |-++++=|.|-+- +.|... .
T Consensus 439 ~rA~gG~glii~e~~~v~~~g~~~~~~~~-~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~ 517 (765)
T PRK08255 439 ARALGGAGLVMTEMTCVSPEGRITPGCPG-LYNDEQEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLE 517 (765)
T ss_pred HHHcCCCcEEEECCeEECCCcCCCCCCCc-cCCHHHHHHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccc
Confidence 3455566554222 1 23455565446 78999999999999999999 6999999998432 112100 0
Q ss_pred cCCCC-------------------C----hHHHHHHHHHHHHHHHHhC-CCccEEEEecCCccccccCcccccc-CCCC-
Q 023097 151 MGGWL-------------------N----KEIVKYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIF-APGR- 204 (287)
Q Consensus 151 ~ggw~-------------------~----~~~~~~f~~ya~~v~~~~~-d~V~~w~t~NEP~~~~~~gy~~g~~-~p~~- 204 (287)
.++|. + .++++.|++=|+++.+ -| |-|. +.+-.||+...| .|..
T Consensus 518 ~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~-aGfDgve---------ih~ahGyLl~qFlsp~~N 587 (765)
T PRK08255 518 EGNWPLISASPLPYLPGSQVPREMTRADMDRVRDDFVAAARRAAE-AGFDWLE---------LHCAHGYLLSSFISPLTN 587 (765)
T ss_pred cCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEE---------EecccchHHHHhcCCCCC
Confidence 01220 1 1367777776655443 34 3332 234557776544 3432
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCceeeeCCCCHHHH
Q 023097 205 HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIEDK 261 (287)
Q Consensus 205 ~~~~~~~~~~~~hn~l~AHa~a~~~~r~~~~~~~~~kIG~~~~~~~~~P~~~~p~Dv 261 (287)
+..+ +.--.+-|-+.--.++++.+|+..+ ++..||+-++...+.+...+++|.
T Consensus 588 ~RtD--~yGGslenR~r~~~eiv~~ir~~~~--~~~~v~~ri~~~~~~~~g~~~~~~ 640 (765)
T PRK08255 588 QRTD--EYGGSLENRLRYPLEVFRAVRAVWP--AEKPMSVRISAHDWVEGGNTPDDA 640 (765)
T ss_pred CCCC--CCCCCHHHHhHHHHHHHHHHHHhcC--CCCeeEEEEccccccCCCCCHHHH
Confidence 1111 1111244556666678888888652 356789888865554444455554
No 146
>PRK01060 endonuclease IV; Provisional
Probab=46.60 E-value=90 Score=28.02 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=36.6
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeE
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY 135 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~ 135 (287)
+++-++.++++|++.+=+.+.-++.... + .+++ +..+.+-+.+.++||++.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~--~-~~~~---~~~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR--K-PLEE---LNIEAFKAACEKYGISPE 64 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC--C-CCCH---HHHHHHHHHHHHcCCCCC
Confidence 7888999999999999887765554432 2 4554 335556667889999853
No 147
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=46.44 E-value=65 Score=30.39 Aligned_cols=63 Identities=22% Similarity=0.395 Sum_probs=44.3
Q ss_pred cHHHHHHHHHcCCCccccccC----c-------CccccCC---------CCCccChhHHHHHHHHHHHHHHCCCeeEEEe
Q 023097 79 YKEDIDLIAKLGFDAYRFSIS----W-------SRIFPDG---------LGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~----W-------~ri~P~~---------~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
.++-|+.|+..++|.+.+-++ | +.+-..+ .| .+.. +=++++++.++++||++|.-+
T Consensus 20 lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~-~YT~---~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 20 VKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGG-YYTQ---EDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred HHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCC-cCCH---HHHHHHHHHHHHcCCEEEEec
Confidence 667799999999998776652 3 3332111 02 3443 447999999999999999986
Q ss_pred ccCCCcHHhH
Q 023097 139 YHWDLPLHLH 148 (287)
Q Consensus 139 ~h~~~P~wl~ 148 (287)
|+|.+..
T Consensus 96 ---D~PGH~~ 102 (329)
T cd06568 96 ---DMPGHTN 102 (329)
T ss_pred ---CCcHHHH
Confidence 5776654
No 148
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=46.00 E-value=76 Score=28.25 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhC
Q 023097 117 ITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (287)
Q Consensus 117 ~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~ 175 (287)
.+...+.|..|+++|+++++++.-+.....+ ....+++..+.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 3557788999999999999998644322111 011445556666666666666775
No 149
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=44.58 E-value=1e+02 Score=29.18 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCCccccccC-cC-ccccCCCCCccChhHHHHHHHHHHHHHHCCCeeE-EEeccCCCcHHhHhhcCCCCC
Q 023097 80 KEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWLN 156 (287)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~-vtL~h~~~P~wl~~~~ggw~~ 156 (287)
++.+++|+++|++.+-+++. -+ .+...- | +.. ..+-+.+.++.+++.|+..+ ++|- +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l-g-R~~--~~~~~~~ai~~lr~~g~~~v~iDli-~GlPg----------- 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFL-G-RIH--SQKQIIKAIENAKKAGFENISIDLI-YDTPL----------- 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-C-CCC--CHHHHHHHHHHHHHcCCCEEEEEee-cCCCC-----------
Confidence 68899999999996666652 22 222221 3 221 25678889999999999754 6765 56662
Q ss_pred hHHHHHHHHHHHHHHHHhCCCccEEEEecCCcc
Q 023097 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (287)
Q Consensus 157 ~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~~ 189 (287)
++.+.|.+-.+.+.+-=-++|..+..-=||+.
T Consensus 162 -qt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT 193 (350)
T PRK08446 162 -DNKKLLKEELKLAKELPINHLSAYSLTIEENT 193 (350)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEeccceecCCC
Confidence 22444555555544422345666665556654
No 150
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=44.41 E-value=2.8e+02 Score=26.19 Aligned_cols=137 Identities=12% Similarity=0.003 Sum_probs=73.8
Q ss_pred ccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCc---------HHhHhhcCC-----CCC---hHHHHHHHHHHHHHHHH
Q 023097 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP---------LHLHESMGG-----WLN---KEIVKYFEIYADTCFAS 173 (287)
Q Consensus 111 ~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P---------~wl~~~~gg-----w~~---~~~~~~f~~ya~~v~~~ 173 (287)
-++++.+..++++++.++++|-+.++=|.|.+.- .-......+ ... .++++.|++=|+.+.+.
T Consensus 70 ~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~a 149 (353)
T cd02930 70 LNSPRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREA 149 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 6688899999999999999999999999996431 100000000 111 24567777655554432
Q ss_pred hCCCccEEEEecCCccccccCcccccc-CCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCcee
Q 023097 174 FGDRVKNWITINEPLQTAVNGYCTGIF-APGR-HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWA 251 (287)
Q Consensus 174 ~~d~V~~w~t~NEP~~~~~~gy~~g~~-~p~~-~~~~~~~~~~~~hn~l~AHa~a~~~~r~~~~~~~~~kIG~~~~~~~~ 251 (287)
==|-|. +..-.||+...| .|.. +..+.-. -.+-|=+.--...++.+|+... ++..|++-++...+
T Consensus 150 GfDgVe---------ih~ahGyLl~qFlsp~~N~RtD~yG--GslenR~r~~~eiv~aIR~~vG--~d~~v~iRi~~~D~ 216 (353)
T cd02930 150 GYDGVE---------IMGSEGYLINQFLAPRTNKRTDEWG--GSFENRMRFPVEIVRAVRAAVG--EDFIIIYRLSMLDL 216 (353)
T ss_pred CCCEEE---------EecccchHHHHhcCCccCCCcCccC--CCHHHHhHHHHHHHHHHHHHcC--CCceEEEEeccccc
Confidence 113332 234457776654 3321 1111111 1233444444566777777542 45667877765443
Q ss_pred eeCCCCHHH
Q 023097 252 EANSDKIED 260 (287)
Q Consensus 252 ~P~~~~p~D 260 (287)
.+...++++
T Consensus 217 ~~~g~~~~e 225 (353)
T cd02930 217 VEGGSTWEE 225 (353)
T ss_pred CCCCCCHHH
Confidence 333234444
No 151
>PLN02389 biotin synthase
Probab=43.94 E-value=60 Score=31.37 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=43.0
Q ss_pred cCcHHHHHHHHHcCCCccccccCcCc-cccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 77 HRYKEDIDLIAKLGFDAYRFSISWSR-IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~r-i~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
...+|.++.|+++|++.|-.+++=++ ++|.-.. .- .++..-+.++.+++.||++..++-
T Consensus 175 ~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~-~~---s~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 175 MLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVIT-TR---SYDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCC-CC---CHHHHHHHHHHHHHcCCeEeEEEE
Confidence 35789999999999999988775222 4444211 11 367788999999999999877653
No 152
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=43.46 E-value=1.2e+02 Score=24.98 Aligned_cols=58 Identities=12% Similarity=0.128 Sum_probs=39.4
Q ss_pred cCcHHHHHHHHHcCCCccccccC-cCc-cccCCCCCccChhHHHHHHHHHHHHHHCC-CeeEEEe
Q 023097 77 HRYKEDIDLIAKLGFDAYRFSIS-WSR-IFPDGLGTKINMEGITFYNNIIDALLQKG-IQPYVTL 138 (287)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~-W~r-i~P~~~g~~~n~~~~~~y~~~i~~l~~~G-I~p~vtL 138 (287)
..-++.++.|++.|++.+.+|+. ++. +...-.. ..+ ++.+.+.|+.+++.| +.+.+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~-~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINR-GHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcC-CCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 34578899999999998888886 432 2211101 122 578899999999999 6655544
No 153
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=43.38 E-value=32 Score=31.84 Aligned_cols=68 Identities=18% Similarity=0.324 Sum_probs=46.1
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChH
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKE 158 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~ 158 (287)
.++-+++++++|+..+.+++= + .=+++.+++|+++++.+.+++| +|++|--..|.-+...|......|
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~---------~-~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTyPN~mT~E 175 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM---------D-RDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTYPNLMTRE 175 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-----------S-STSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCSTTEEEE-
T ss_pred HHHHHHHHHHcCCCEEeeCcC---------C-CCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccCccHHHHH
Confidence 366799999999999998863 1 2356789999999999999986 566665556766665554444433
No 154
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=43.34 E-value=1.9e+02 Score=26.75 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=39.6
Q ss_pred cHHHHHHHHHcCCCccc-cccC-c-----CccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCc
Q 023097 79 YKEDIDLIAKLGFDAYR-FSIS-W-----SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R-~si~-W-----~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P 144 (287)
.++.++.|+++|++.+- .+++ - .++.|. ... .+.+.+.++.+++.||++..++- +++|
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~----~~t---~~~~l~~i~~a~~~Gi~~~s~~i-iG~~ 170 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPN----KLS---SDEWLEVIKTAHRLGIPTTATMM-FGHV 170 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCC----CCC---HHHHHHHHHHHHHcCCCceeeEE-ecCC
Confidence 46889999999999885 2322 1 122232 223 45678999999999999988764 3443
No 155
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=42.99 E-value=69 Score=32.39 Aligned_cols=106 Identities=18% Similarity=0.184 Sum_probs=62.7
Q ss_pred cHHHHHHHHHcCCCccccccC--cCccccCC-CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCC
Q 023097 79 YKEDIDLIAKLGFDAYRFSIS--WSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWL 155 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~--W~ri~P~~-~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~ 155 (287)
-++.+++|+++|++.+=+++. -.++.-.- .| .+ .+-..+.++.+++.|+++.+.|- +++|.
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRg--ht---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg---------- 268 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQTIYNDILERTKRG--HT---VRDVVEATRLLRDAGLKVVYHIM-PGLPG---------- 268 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECccCCHHHHHHhCCC--CC---HHHHHHHHHHHHHcCCeEEEEee-cCCCC----------
Confidence 468899999999986666653 22222111 12 12 45667888899999998777775 55552
Q ss_pred ChHHHHHHHHHHHHHHH--HhC-CCccEEEEecCCccccccCccccccCC
Q 023097 156 NKEIVKYFEIYADTCFA--SFG-DRVKNWITINEPLQTAVNGYCTGIFAP 202 (287)
Q Consensus 156 ~~~~~~~f~~ya~~v~~--~~~-d~V~~w~t~NEP~~~~~~gy~~g~~~p 202 (287)
++.+.+.+=++.++. .++ |.|+.+-+.=.|+....--|..|.|.|
T Consensus 269 --qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p 316 (522)
T TIGR01211 269 --SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKP 316 (522)
T ss_pred --CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCC
Confidence 223445555555654 344 567777666566543332344454444
No 156
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=42.98 E-value=70 Score=30.33 Aligned_cols=94 Identities=14% Similarity=0.063 Sum_probs=59.8
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEecc--CCCcHHhHhh------
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH--WDLPLHLHES------ 150 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h--~~~P~wl~~~------ 150 (287)
..+|++...+.|++.+|+....++. +-..+.|+.+++.|+++.+++.. ...|..+.+.
T Consensus 90 ~~~dl~~a~~~gvd~iri~~~~~e~--------------~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~ 155 (337)
T PRK08195 90 TVDDLKMAYDAGVRVVRVATHCTEA--------------DVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMES 155 (337)
T ss_pred cHHHHHHHHHcCCCEEEEEEecchH--------------HHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHh
Confidence 3589999999999999988643322 23588899999999999988753 2234433321
Q ss_pred c----------CCCCChHHHHHHHHHHHHHHHHhCCCccE-EEEecCCcc
Q 023097 151 M----------GGWLNKEIVKYFEIYADTCFASFGDRVKN-WITINEPLQ 189 (287)
Q Consensus 151 ~----------ggw~~~~~~~~f~~ya~~v~~~~~d~V~~-w~t~NEP~~ 189 (287)
+ .|... ++...++.+.+-+++++.++. +-.-|-..+
T Consensus 156 ~Ga~~i~i~DT~G~~~---P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGl 202 (337)
T PRK08195 156 YGAQCVYVVDSAGALL---PEDVRDRVRALRAALKPDTQVGFHGHNNLGL 202 (337)
T ss_pred CCCCEEEeCCCCCCCC---HHHHHHHHHHHHHhcCCCCeEEEEeCCCcch
Confidence 1 23333 445566666676777544443 445555543
No 157
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=42.22 E-value=64 Score=28.34 Aligned_cols=80 Identities=18% Similarity=0.111 Sum_probs=53.5
Q ss_pred cHHHHHH----HHHcCCCccccccCcCccccCC-CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCC
Q 023097 79 YKEDIDL----IAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGG 153 (287)
Q Consensus 79 ~~eDi~l----~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~gg 153 (287)
-.+|++. +++.|++.+|+.++=+...... -+ .--++.++...++++.+++.|+++.+++-+.+
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~----------- 132 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLN-KSREEALERIEEAVKYAKELGYEVAFGCEDAS----------- 132 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTC-SHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-----------
T ss_pred hHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhc-CCHHHHHHHHHHHHHHHHhcCCceEeCccccc-----------
Confidence 3455555 4569999999998755543332 13 22346788999999999999999988875422
Q ss_pred CCChHHHHHHHHHHHHHHHH
Q 023097 154 WLNKEIVKYFEIYADTCFAS 173 (287)
Q Consensus 154 w~~~~~~~~f~~ya~~v~~~ 173 (287)
..+ .+.+.++++.+.+.
T Consensus 133 ~~~---~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 133 RTD---PEELLELAEALAEA 149 (237)
T ss_dssp GSS---HHHHHHHHHHHHHH
T ss_pred ccc---HHHHHHHHHHHHHc
Confidence 122 45666677776555
No 158
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=41.84 E-value=61 Score=30.09 Aligned_cols=73 Identities=15% Similarity=0.030 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCccEEEEecCCccccccCcc
Q 023097 117 ITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYC 196 (287)
Q Consensus 117 ~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~~~~~~gy~ 196 (287)
++-+.+.++.++++||++.+++- +++|. ++.+.+.+-++.+.+.=-+.|+.....-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 45678899999999999888765 45551 234566666666555434678888888888866554455
Q ss_pred ccccCC
Q 023097 197 TGIFAP 202 (287)
Q Consensus 197 ~g~~~p 202 (287)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 566654
No 159
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=41.61 E-value=59 Score=34.35 Aligned_cols=65 Identities=26% Similarity=0.377 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCCccccccCcCccccCCCC------CccChh--HHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhH
Q 023097 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLG------TKINME--GITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH 148 (287)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g------~~~n~~--~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~ 148 (287)
.+-++-++++||.++=.|=-|.-.=-+..| +++|++ |.+-+.+++.+++++||-.|+++ .|.++.
T Consensus 22 ~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DI----VPNHMa 94 (889)
T COG3280 22 RALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDI----VPNHMA 94 (889)
T ss_pred HHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEe----cccchh
Confidence 445778899999988777444322100001 234443 56779999999999999999998 466654
No 160
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=40.60 E-value=73 Score=29.35 Aligned_cols=87 Identities=11% Similarity=0.138 Sum_probs=59.1
Q ss_pred HHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCC----CcH----HhH------
Q 023097 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD----LPL----HLH------ 148 (287)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~----~P~----wl~------ 148 (287)
++.+++.+=..=-++..|-.|-|++ .+.. ....++++.++++|+++++++..++ -+. -+.
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g---~~~~---~~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~ 89 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADG---TLTG---LPDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQ 89 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCC---CCCC---CCCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHH
Confidence 5667776666666888899998764 4432 2346899999999999999997653 110 010
Q ss_pred ----------hhc--CC----CC--ChHHHHHHHHHHHHHHHHhC
Q 023097 149 ----------ESM--GG----WL--NKEIVKYFEIYADTCFASFG 175 (287)
Q Consensus 149 ----------~~~--gg----w~--~~~~~~~f~~ya~~v~~~~~ 175 (287)
.++ .| |+ .++..+.|..+.+.+.+++.
T Consensus 90 ~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~ 134 (313)
T cd02874 90 RLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLH 134 (313)
T ss_pred HHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhh
Confidence 012 34 44 44667889999999999886
No 161
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=40.22 E-value=70 Score=28.70 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCC---CChHHHHHHHHHHHHHHHHhCCCccE
Q 023097 118 TFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGW---LNKEIVKYFEIYADTCFASFGDRVKN 180 (287)
Q Consensus 118 ~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw---~~~~~~~~f~~ya~~v~~~~~d~V~~ 180 (287)
...+++++++.++|++-+.-.-|..+|..... ..| .+.+..+.|.+-++.+-++|+++++.
T Consensus 15 ~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~--~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I 78 (253)
T TIGR01856 15 DTLEEVVQEAIQLGFEEICFTEHAPLPFEYPE--ETALDKMAFSSLPEYFKEINRLKKEYADKLKI 78 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcccCCCc--cccccchhHHHHHHHHHHHHHHHHHhhCCCeE
Confidence 45789999999999999999999765432211 112 12233555555566677889876654
No 162
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=40.13 E-value=97 Score=29.61 Aligned_cols=72 Identities=26% Similarity=0.286 Sum_probs=51.3
Q ss_pred HHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHH
Q 023097 86 IAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEI 165 (287)
Q Consensus 86 ~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ 165 (287)
..+.|+..+| |-| | .+-. -+....+++.++++|+-.=+..+|-.+..-+.++|++-..+..++--.+
T Consensus 91 ~~~~g~~k~R-------INP---G-Nig~--~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~ 157 (361)
T COG0821 91 AAECGVDKVR-------INP---G-NIGF--KDRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALE 157 (361)
T ss_pred hhhcCcceEE-------ECC---c-ccCc--HHHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHH
Confidence 3455666666 444 4 3321 2478999999999999999999999999999999986655545554444
Q ss_pred HHHHH
Q 023097 166 YADTC 170 (287)
Q Consensus 166 ya~~v 170 (287)
+++.+
T Consensus 158 ~a~~~ 162 (361)
T COG0821 158 HAELL 162 (361)
T ss_pred HHHHH
Confidence 55443
No 163
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=39.89 E-value=28 Score=34.22 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=37.4
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCC---CCCccChhHHHHHHHHHHHHHHCCCe-eEEEeccCCCc
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLP 144 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~---~g~~~n~~~~~~y~~~i~~l~~~GI~-p~vtL~h~~~P 144 (287)
-++.+++|+++|++.+-+++ ...-++- -+-..+ .+.+.+.++.+++.|++ +-++|. +++|
T Consensus 150 ~~e~l~~lk~~G~~risiGv--qS~~~~~l~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGV--QDFNKEVQQAVNRIQP---EEMIFELMNHAREAGFTSINIDLI-YGLP 213 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcC--CCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-eeCC
Confidence 46889999999998655554 3332221 020122 46678899999999996 434443 3444
No 164
>PLN02923 xylose isomerase
Probab=39.67 E-value=85 Score=31.02 Aligned_cols=153 Identities=14% Similarity=0.061 Sum_probs=75.0
Q ss_pred hhhcccccccccCCCCCcCceeeeec----cCCCccc-cCCCCCcccccccCcHHHH----HHHHHcCCCccccccC-cC
Q 023097 32 VATSAYQIEGACEEGNRGASIWDDFT----HTEGKII-DKSNGDVAVDHYHRYKEDI----DLIAKLGFDAYRFSIS-WS 101 (287)
Q Consensus 32 ~atsa~Q~EG~~~~~g~~~s~wd~~~----~~~~~~~-~~~~~~~a~d~~~~~~eDi----~l~~~lG~~~~R~si~-W~ 101 (287)
+++++.|.--....-|++.+..+.|. ...++|. .|..++. ---|+.|..|- +-|++ ++||++. |.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~m~~yF~~i~kI~yeG~~s~n-plaf~~Ynp~evv~GK~M~e----hlRFav~yWH 92 (478)
T PLN02923 18 SGVIAAQPPTCPADLGSKCSDSDEWEGEFFPGIPKIKYEGPSSKN-PLAYKWYNAEEEILGKKMKD----WMRFSVAFWH 92 (478)
T ss_pred HHHHhcCCCCCchhhcccccccHHHHHHhcCCCCceeeeCCCCCC-CccccccCchhhcCCccHHH----hhhhhheeee
Confidence 45566666655445566655444332 1223332 3333321 12244455442 44554 6899875 52
Q ss_pred cc-----ccCCCC---CccC------hhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCC--CChHHHHHHHH
Q 023097 102 RI-----FPDGLG---TKIN------MEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGW--LNKEIVKYFEI 165 (287)
Q Consensus 102 ri-----~P~~~g---~~~n------~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw--~~~~~~~~f~~ 165 (287)
.+ -|-|.+ ..++ ..+....|-.++.+.+-|+ |.+|.|--|+= .. |.= ......+.-.+
T Consensus 93 Tf~~~G~DpFG~~T~~rpw~~~~d~m~~A~~k~daaFEf~~kLG~-~y~cFHD~Dl~----Pe-g~sl~E~~~nld~ivd 166 (478)
T PLN02923 93 TFRGTGGDPFGAPTKYWPWEDGTNSLAMAKRRMRANFEFLKKLGV-DRWCFHDRDIA----PD-GKTLEESNANLDEVVA 166 (478)
T ss_pred ecCCCCCCCCCCCcCCCCcccCCCHHHHHHHHHHHHHHHHHHhCC-CeEccCccccC----CC-CCCHHHHHhhHHHHHH
Confidence 22 222211 1122 1266778888889999997 66777755531 11 110 12223445555
Q ss_pred HHHHHHHHhCCCccEEEEecCCccccccCccccc
Q 023097 166 YADTCFASFGDRVKNWITINEPLQTAVNGYCTGI 199 (287)
Q Consensus 166 ya~~v~~~~~d~V~~w~t~NEP~~~~~~gy~~g~ 199 (287)
+.+...+.-|-++ .|+-+|+++.--|..|.
T Consensus 167 ~~ke~~~~TGikl----lwgTaNlFshPrf~~GA 196 (478)
T PLN02923 167 LAKELQEGTKIRP----LWGTAQLFKHPRYMHGA 196 (478)
T ss_pred HHHHHhHhhCcee----eeeccccccCccccCCc
Confidence 5555555544333 45555666554455543
No 165
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=39.62 E-value=88 Score=29.30 Aligned_cols=63 Identities=14% Similarity=0.323 Sum_probs=44.6
Q ss_pred cHHHHHHHHHcCCCcccccc----CcCc---cccCCC--C---CccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHH
Q 023097 79 YKEDIDLIAKLGFDAYRFSI----SWSR---IFPDGL--G---TKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLH 146 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si----~W~r---i~P~~~--g---~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~w 146 (287)
.++-|+.|+..++|.+.+-+ +|+- -.|+-. | ..+.. +=+.++++.++++||++|.-+ |+|.+
T Consensus 20 ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~---~di~elv~yA~~rgI~vIPEI---d~PGH 93 (311)
T cd06570 20 IKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQ---EQIREVVAYARDRGIRVVPEI---DVPGH 93 (311)
T ss_pred HHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCH---HHHHHHHHHHHHcCCEEEEee---cCccc
Confidence 56678999999999877765 5642 233310 1 14553 457999999999999999987 56654
Q ss_pred h
Q 023097 147 L 147 (287)
Q Consensus 147 l 147 (287)
.
T Consensus 94 ~ 94 (311)
T cd06570 94 A 94 (311)
T ss_pred h
Confidence 3
No 166
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=39.45 E-value=2.5e+02 Score=27.33 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=59.0
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCC---CCCc--cChhHH-HHHHHHHHHHHHCCCeeEEEec----------cCC
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTK--INMEGI-TFYNNIIDALLQKGIQPYVTLY----------HWD 142 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~---~g~~--~n~~~~-~~y~~~i~~l~~~GI~p~vtL~----------h~~ 142 (287)
..+.++.++++|++.+=+.=-|..--... -| . +|++.+ .-...+++.+++.||++=+=+- .-.
T Consensus 60 i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~G-dW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~ 138 (394)
T PF02065_consen 60 ILELADAAAELGYEYFVIDDGWFGGRDDDNAGLG-DWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLYRE 138 (394)
T ss_dssp HHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTS-BECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSSCHCCS
T ss_pred HHHHHHHHHHhCCEEEEEcCccccccCCCcccCC-ceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccchhHHHHh
Confidence 34557888999999988888896431110 02 1 222222 2278899999999999755331 123
Q ss_pred CcHHhHhhcC------------CCCChHHHHHHHHHHHHHHHHhC
Q 023097 143 LPLHLHESMG------------GWLNKEIVKYFEIYADTCFASFG 175 (287)
Q Consensus 143 ~P~wl~~~~g------------gw~~~~~~~~f~~ya~~v~~~~~ 175 (287)
.|.|+....+ ...+|++.+...+-...+++.+|
T Consensus 139 hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 139 HPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp SBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred CccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 5888754211 13477888888888888888886
No 167
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=39.42 E-value=2e+02 Score=26.95 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=42.9
Q ss_pred HHHHHHHHHHCCCeeEEEeccC-----CCcHHhHhh-------------c-----------CCCCChHHHHHHHHHHHHH
Q 023097 120 YNNIIDALLQKGIQPYVTLYHW-----DLPLHLHES-------------M-----------GGWLNKEIVKYFEIYADTC 170 (287)
Q Consensus 120 y~~~i~~l~~~GI~p~vtL~h~-----~~P~wl~~~-------------~-----------ggw~~~~~~~~f~~ya~~v 170 (287)
-..+++.|+++|++.++.++-+ +.|..-... + -.|.||+..+.|.+.-+.+
T Consensus 66 p~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06604 66 PKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKF 145 (339)
T ss_pred HHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHH
Confidence 4789999999999988765422 122221110 0 1367888888887766655
Q ss_pred HHHhCCCcc-EEEEecCCccc
Q 023097 171 FASFGDRVK-NWITINEPLQT 190 (287)
Q Consensus 171 ~~~~~d~V~-~w~t~NEP~~~ 190 (287)
. .. -|+ +|+=+|||..+
T Consensus 146 ~-~~--Gvdg~w~D~~Ep~~~ 163 (339)
T cd06604 146 V-DL--GVDGIWNDMNEPAVF 163 (339)
T ss_pred h-hC--CCceEeecCCCcccc
Confidence 4 23 344 48889999865
No 168
>PRK05474 xylose isomerase; Provisional
Probab=39.15 E-value=4e+02 Score=26.42 Aligned_cols=88 Identities=20% Similarity=0.348 Sum_probs=52.3
Q ss_pred HHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHH----HHHHCCCee-EEEeccCCCcHHhHhhcCCCCC
Q 023097 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIID----ALLQKGIQP-YVTLYHWDLPLHLHESMGGWLN 156 (287)
Q Consensus 82 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~----~l~~~GI~p-~vtL~h~~~P~wl~~~~ggw~~ 156 (287)
-++.+.++|+..|=|- =..|.|++ . .+. +..+.++++++ .+.+-||++ ++|..-|..|.... |+.+|
T Consensus 84 afe~~~kLg~~~~~FH--D~D~~peg-~-s~~-E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~Tn 155 (437)
T PRK05474 84 AFEFFTKLGVPYYCFH--DVDVAPEG-A-SLK-EYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMA---GAATN 155 (437)
T ss_pred HHHHHHHhCCCeeccC--ccccCCCC-C-CHH-HHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccC---CcCCC
Confidence 3567899999986554 33488876 2 232 23234455544 455678885 56677788897752 78888
Q ss_pred hH--HHHHHHHHHHH---HHHHhCCC
Q 023097 157 KE--IVKYFEIYADT---CFASFGDR 177 (287)
Q Consensus 157 ~~--~~~~f~~ya~~---v~~~~~d~ 177 (287)
|+ +...=++-++. +.+++|..
T Consensus 156 pd~~Vra~A~~qvk~alD~~~eLGge 181 (437)
T PRK05474 156 PDPDVFAYAAAQVKTALDATKRLGGE 181 (437)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 75 22222222222 45677754
No 169
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=38.87 E-value=41 Score=32.63 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=44.0
Q ss_pred CCcccccccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEE
Q 023097 69 GDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (287)
Q Consensus 69 ~~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vt 137 (287)
.-.++|-+..+++-|+..++.|+.++ |+|- | .++. +++|++|.++||.-+.|
T Consensus 332 ~vlASDAFFPF~D~Id~Aa~~GV~aI--------iQPG--G-SiRD------~evI~aane~giaMvfT 383 (390)
T PRK07106 332 VALGSDAFFPFGDNIERAAKSGVKYI--------AQPG--G-SIRD------DNVIETCNKYGMTMAFT 383 (390)
T ss_pred eEEEecccCCCCchHHHHHHcCCEEE--------ECCC--C-CCCc------HHHHHHHHHhCCEEEEC
Confidence 34689999999999999999999986 7885 5 5543 78999999999988776
No 170
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=38.86 E-value=1.2e+02 Score=28.51 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=53.6
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccC-C-----CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcC
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPD-G-----LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMG 152 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~-~-----~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~g 152 (287)
.+|.++.||++|++.+- +.+.. ++++ - .+ ... .+-..+.|+.+++.||++..++- +++|
T Consensus 140 ~~e~l~~LkeAGl~~i~-~~~~E-~~~~~v~~~i~~~-~~~---~~~~~~~i~~a~~~Gi~v~s~~i-~G~~-------- 204 (343)
T TIGR03551 140 VEEALKRLKEAGLDSMP-GTAAE-ILDDEVRKVICPD-KLS---TAEWIEIIKTAHKLGIPTTATIM-YGHV-------- 204 (343)
T ss_pred HHHHHHHHHHhCccccc-Ccchh-hcCHHHHHhcCCC-CCC---HHHHHHHHHHHHHcCCcccceEE-EecC--------
Confidence 47889999999999875 22221 1111 0 02 222 34557899999999998876643 2332
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCCccEEEEec
Q 023097 153 GWLNKEIVKYFEIYADTCFASFGDRVKNWITIN 185 (287)
Q Consensus 153 gw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~N 185 (287)
.+.+.......+.+.+-..++ .+.-.+++|
T Consensus 205 --Et~ed~~~~l~~lr~l~~~~~-~~~~~iP~~ 234 (343)
T TIGR03551 205 --ETPEHWVDHLLILREIQEETG-GFTEFVPLP 234 (343)
T ss_pred --CCHHHHHHHHHHHHHhhHHhC-CeeEEEecc
Confidence 334445566666666666664 344466666
No 171
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=38.52 E-value=1.3e+02 Score=29.53 Aligned_cols=89 Identities=15% Similarity=0.154 Sum_probs=54.7
Q ss_pred cHHHHHHHHHcCCCccccc--cCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeE-EEeccCCCcHH--hHhhcCC
Q 023097 79 YKEDIDLIAKLGFDAYRFS--ISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLH--LHESMGG 153 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~s--i~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~-vtL~h~~~P~w--l~~~~gg 153 (287)
-.+|++.+.++.--.-|++ +.|. . +|.+.++ +.++++||..- ++..-|..|+- -.=++|.
T Consensus 72 ~i~D~~~v~~Lt~~~~~v~LH~~wd-------~--vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GS 136 (412)
T TIGR02629 72 KLEDCAVIQQLTRATPNVSLHIPWD-------K--ADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGS 136 (412)
T ss_pred HHHHHHHHHhhcCCCCCccccCCCC-------c--CCHHHHH------HHHHHcCCccceeccccccCcccccccccccc
Confidence 3578888888877777777 4771 2 3644444 88999999988 77666766621 0112355
Q ss_pred CCCh--HHHHHHHHHHHHH---HHHhCCC-ccEEE
Q 023097 154 WLNK--EIVKYFEIYADTC---FASFGDR-VKNWI 182 (287)
Q Consensus 154 w~~~--~~~~~f~~ya~~v---~~~~~d~-V~~w~ 182 (287)
..|| .+.+...+-+..| .+..|.. |..|+
T Consensus 137 LtnPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 137 LSHTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 6655 4556666665554 4566654 44444
No 172
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=38.47 E-value=1.2e+02 Score=28.31 Aligned_cols=77 Identities=14% Similarity=0.084 Sum_probs=46.6
Q ss_pred cChhHHHHHHHHHHHHHHCCCeeEEEeccCCC---cHHhHhhc-------------------------CCCCChHHHHHH
Q 023097 112 INMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLHLHESM-------------------------GGWLNKEIVKYF 163 (287)
Q Consensus 112 ~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~---P~wl~~~~-------------------------ggw~~~~~~~~f 163 (287)
+|.+.+---.++|++|+++|+++++.++-+-. |..-..+. -.+.||+..+.|
T Consensus 67 ~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww 146 (317)
T cd06599 67 WNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWW 146 (317)
T ss_pred cCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHH
Confidence 33333334578999999999999987764422 22111000 114678888877
Q ss_pred HHHHHHHHHHhCCCccEEEEecCCcc
Q 023097 164 EIYADTCFASFGDRVKNWITINEPLQ 189 (287)
Q Consensus 164 ~~ya~~v~~~~~d~V~~w~t~NEP~~ 189 (287)
.+..+......| -.-+|+=+|||.+
T Consensus 147 ~~~~~~~~~~~G-vdg~w~D~~E~~~ 171 (317)
T cd06599 147 KEGVKEALLDLG-IDSTWNDNNEYEI 171 (317)
T ss_pred HHHHHHHHhcCC-CcEEEecCCCCcc
Confidence 776655544443 2345888999974
No 173
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=38.38 E-value=2.2e+02 Score=24.06 Aligned_cols=88 Identities=15% Similarity=0.282 Sum_probs=46.5
Q ss_pred HHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcH----------------
Q 023097 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPL---------------- 145 (287)
Q Consensus 82 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~---------------- 145 (287)
|.+.+|+.|++.+=+=+. +|.+ ..| ..|..-++.++++||. +..+||..|.
T Consensus 13 d~~~~k~~gi~fviiKat------eG~~-y~D----~~~~~~~~~a~~aGl~--~G~Yhy~~~~~~a~~qA~~f~~~~~~ 79 (184)
T cd06525 13 NFNAVKDSGVEVVYIKAT------EGTT-FVD----SYFNENYNGAKAAGLK--VGFYHFLVGTSNPEEQAENFYNTIKG 79 (184)
T ss_pred CHHHHHhCCCeEEEEEec------CCCc-ccC----HhHHHHHHHHHHCCCc--eEEEEEeeCCCCHHHHHHHHHHhccc
Confidence 566777766553211111 2222 456 4577777778888873 4667766541
Q ss_pred -------HhHhh-cCCCCChHHHHHHHHHHHHHHHHhCCCccEEE
Q 023097 146 -------HLHES-MGGWLNKEIVKYFEIYADTCFASFGDRVKNWI 182 (287)
Q Consensus 146 -------wl~~~-~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~ 182 (287)
+|.-+ .++.......+....|++++-++.|-++-.|.
T Consensus 80 ~~~~~~~~lD~E~~~~~~~~~~~~~~~~f~~~v~~~~G~~~~iY~ 124 (184)
T cd06525 80 KKMDLKPALDVEVNFGLSKDELNDYVLRFIEEFEKLSGLKVGIYT 124 (184)
T ss_pred cCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 10000 12222233456667777777777676655444
No 174
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=38.21 E-value=31 Score=28.89 Aligned_cols=62 Identities=13% Similarity=0.025 Sum_probs=41.3
Q ss_pred ccCcHHHHHHHHHcCCCccccccCcCccccCCC-CCccChhHHHHHHHHHHHHHHCCCeeEEEe
Q 023097 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGL-GTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
....++-+++++.+|.+.+++...+....+... . .--....+.++.+.+.+.++|+.+.+=-
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~-~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTE-ENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHH-HHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHH-HHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 456778899999999999999866411111110 1 1112356788888899999998866653
No 175
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=38.03 E-value=38 Score=30.31 Aligned_cols=60 Identities=8% Similarity=0.000 Sum_probs=40.0
Q ss_pred ccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEE
Q 023097 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (287)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vt 137 (287)
...++.-+++.+.+|.+++++........+.. . ..-....+.++.+.+.+.++||+..+=
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~-~-~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP-N-VIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH-H-HHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 44566678999999999999864322111111 1 112345678889999999999987665
No 176
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=37.65 E-value=48 Score=29.93 Aligned_cols=61 Identities=8% Similarity=0.093 Sum_probs=40.3
Q ss_pred ccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEe
Q 023097 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
..+++.-+++++++|.+.++++-. +..+.+...+.-...++.++++++.++++||.+.+=.
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 345677799999999999998531 1111110001122356778889999999999888864
No 177
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=37.59 E-value=1.1e+02 Score=29.91 Aligned_cols=93 Identities=11% Similarity=0.167 Sum_probs=54.0
Q ss_pred cHHHHHHHHHcCCCccccccC-c-CccccCCCCCccChhHHHHHHHHHHHHHHCCCeeE-EEeccCCCcHHhHhhcCCCC
Q 023097 79 YKEDIDLIAKLGFDAYRFSIS-W-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWL 155 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~-W-~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~-vtL~h~~~P~wl~~~~ggw~ 155 (287)
-++.+++|+++|++.+-+++. - .++...- | +-. ..+-..+.|+.+++.|+..+ ++|- +++|. .
T Consensus 140 t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l-~-R~~--~~~~~~~ai~~l~~~g~~~i~~dlI-~GlP~---------q 205 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIGVQSFHDSELHAL-H-RPQ--KRADVHQALEWIRAAGFPILNIDLI-YGIPG---------Q 205 (430)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHh-C-CCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------C
Confidence 467899999999986666652 2 1222221 3 211 24668889999999999864 5654 56662 2
Q ss_pred ChHHHHHHHHHHHHHHHHhC-CCccEEEEecCCcc
Q 023097 156 NKEIVKYFEIYADTCFASFG-DRVKNWITINEPLQ 189 (287)
Q Consensus 156 ~~~~~~~f~~ya~~v~~~~~-d~V~~w~t~NEP~~ 189 (287)
+ .+.|.+=.+.+.+ ++ +++..+...=+|+.
T Consensus 206 t---~e~~~~~l~~~~~-l~~~~is~y~L~~~~~T 236 (430)
T PRK08208 206 T---HASWMESLDQALV-YRPEELFLYPLYVRPLT 236 (430)
T ss_pred C---HHHHHHHHHHHHh-CCCCEEEEccccccCCC
Confidence 3 3344444444433 33 45665555555553
No 178
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=37.55 E-value=64 Score=32.29 Aligned_cols=93 Identities=14% Similarity=0.115 Sum_probs=55.1
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCC---CCCccChhHHHHHHHHHHHHHHCCC-eeEEEeccCCCcHHhHhhcCCC
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGI-QPYVTLYHWDLPLHLHESMGGW 154 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~---~g~~~n~~~~~~y~~~i~~l~~~GI-~p~vtL~h~~~P~wl~~~~ggw 154 (287)
-++-++.|+++|++ |+||.-...-++- -| +- -..+-..+.++.+++.|+ .+-++|- +++|.
T Consensus 268 t~e~L~~Lk~~Gv~--RISIGvQS~~d~vLk~ig-R~--ht~e~v~~ai~~ar~~Gf~~In~DLI-~GLPg--------- 332 (488)
T PRK08207 268 TEEKLEVLKKYGVD--RISINPQTMNDETLKAIG-RH--HTVEDIIEKFHLAREMGFDNINMDLI-IGLPG--------- 332 (488)
T ss_pred CHHHHHHHHhcCCC--eEEEcCCcCCHHHHHHhC-CC--CCHHHHHHHHHHHHhCCCCeEEEEEE-eCCCC---------
Confidence 46779999999998 6665533332221 03 21 125677889999999999 5656765 56662
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCccEEEEecCCcc
Q 023097 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (287)
Q Consensus 155 ~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~~ 189 (287)
++.+.|.+-.+.+.+.=-+.|..+...=+|+.
T Consensus 333 ---Et~ed~~~tl~~l~~L~pd~isv~~L~i~~gT 364 (488)
T PRK08207 333 ---EGLEEVKHTLEEIEKLNPESLTVHTLAIKRAS 364 (488)
T ss_pred ---CCHHHHHHHHHHHHhcCcCEEEEEeceEcCCC
Confidence 22445555555544433345665555444443
No 179
>PRK12677 xylose isomerase; Provisional
Probab=37.53 E-value=2.7e+02 Score=26.94 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=53.0
Q ss_pred CcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeE-EEeccCCCcHHhHhhcCCCCC
Q 023097 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWLN 156 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~-vtL~h~~~P~wl~~~~ggw~~ 156 (287)
...|-++.++++|++.+=+ .-..+.|-. ....+--+..+++-+.+.++||++. ++...|..|.+ +.|++.+
T Consensus 32 ~~~E~v~~~a~~Gf~gVEl--h~~~l~p~~---~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts 103 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTF--HDDDLVPFG---ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTS 103 (384)
T ss_pred CHHHHHHHHHHhCCCEEEe--cccccCCCC---CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCC
Confidence 4678899999999998744 223344432 1111111357788888999999976 55554555543 2367776
Q ss_pred hH-HHHHH-HHHHHH---HHHHhCC
Q 023097 157 KE-IVKYF-EIYADT---CFASFGD 176 (287)
Q Consensus 157 ~~-~~~~f-~~ya~~---v~~~~~d 176 (287)
++ -+..+ .++.+. ++..+|-
T Consensus 104 ~d~~~R~~Ai~~~~r~IdlA~eLGa 128 (384)
T PRK12677 104 NDRDVRRYALRKVLRNIDLAAELGA 128 (384)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 53 12222 444443 3445654
No 180
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=37.49 E-value=1.1e+02 Score=32.18 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHH
Q 023097 119 FYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTC 170 (287)
Q Consensus 119 ~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v 170 (287)
.+..+++.|+++|+..=+..+|..++.-+..+||. .....++--.+|++.|
T Consensus 211 ~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~ 261 (733)
T PLN02925 211 VFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARIC 261 (733)
T ss_pred HHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 34459999999999999999999999999998865 3333444444444443
No 181
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=37.48 E-value=60 Score=31.94 Aligned_cols=91 Identities=21% Similarity=0.276 Sum_probs=52.0
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCC---CCCccChhHHHHHHHHHHHHHHCCCe-eEEEeccCCCcHHhHhhcCCC
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGW 154 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~---~g~~~n~~~~~~y~~~i~~l~~~GI~-p~vtL~h~~~P~wl~~~~ggw 154 (287)
-++.+++|+++|++.+-+++ .-.-|+- -+-..+ .+-..+.|+.+++.|+. +-++|- +++|.
T Consensus 151 t~e~l~~L~~~G~~rvsiGv--QS~~~~vl~~l~R~~~---~~~~~~ai~~lr~~G~~~v~~dli-~GlPg--------- 215 (453)
T PRK13347 151 TAEMLQALAALGFNRASFGV--QDFDPQVQKAINRIQP---EEMVARAVELLRAAGFESINFDLI-YGLPH--------- 215 (453)
T ss_pred CHHHHHHHHHcCCCEEEECC--CCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-EeCCC---------
Confidence 46889999999999555554 3332221 020122 56678899999999997 556654 45552
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCccEEEEecCC
Q 023097 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEP 187 (287)
Q Consensus 155 ~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP 187 (287)
. +.+.|.+-.+.+.+.=-++|..+.....|
T Consensus 216 q---t~e~~~~tl~~~~~l~p~~i~~y~l~~~p 245 (453)
T PRK13347 216 Q---TVESFRETLDKVIALSPDRIAVFGYAHVP 245 (453)
T ss_pred C---CHHHHHHHHHHHHhcCCCEEEEecccccc
Confidence 2 34445555555544222445444333333
No 182
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=37.12 E-value=1.3e+02 Score=28.52 Aligned_cols=59 Identities=15% Similarity=0.294 Sum_probs=48.4
Q ss_pred HHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCc
Q 023097 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (287)
Q Consensus 82 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P 144 (287)
+.+.+|++|.+++.|=+=|. |+.+. .+|..-.++.+++.++|++.+|--++-+..++.+
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~~-ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~ 169 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDAE-EINIQKKAYIERIGSECVAEDIPFFLEVLTYDDN 169 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCCh-HHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 37889999999999977654 33323 6888889999999999999999999988877544
No 183
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=37.08 E-value=1.2e+02 Score=24.75 Aligned_cols=57 Identities=16% Similarity=0.074 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhCCC
Q 023097 117 ITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDR 177 (287)
Q Consensus 117 ~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~ 177 (287)
.+=+.-+++.|++.|++|++.+.= -.+.|.. |-| .+++..+.|.+=.+..++++|-.
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wyd--ytG-~~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQP-VNGKWYD--YTG-LSKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-----HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHHcCCceEEEecC-CcHHHHH--HhC-CCHHHHHHHHHHHHHHHHHCCCE
Confidence 455788999999999999998841 1124442 345 36677888888888888888854
No 184
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=36.91 E-value=1.4e+02 Score=29.35 Aligned_cols=57 Identities=25% Similarity=0.341 Sum_probs=41.9
Q ss_pred ccccCcHHH-----HHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCc
Q 023097 74 DHYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (287)
Q Consensus 74 d~~~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P 144 (287)
-.|.+|.+| +++..+-|++.||+ +..- |. ..-....|+..++.|.....+++-=..|
T Consensus 90 vGYrhyaDDvVe~Fv~ka~~nGidvfRi-------FDAl-----ND--~RNl~~ai~a~kk~G~h~q~~i~YT~sP 151 (472)
T COG5016 90 VGYRHYADDVVEKFVEKAAENGIDVFRI-------FDAL-----ND--VRNLKTAIKAAKKHGAHVQGTISYTTSP 151 (472)
T ss_pred ccccCCchHHHHHHHHHHHhcCCcEEEe-------chhc-----cc--hhHHHHHHHHHHhcCceeEEEEEeccCC
Confidence 357888888 57789999999984 4333 32 4557788999999999999888743344
No 185
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=36.03 E-value=72 Score=30.37 Aligned_cols=71 Identities=18% Similarity=0.354 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhc--------CCC--------CChHHHHHHHHHHHHH----HHHhC
Q 023097 116 GITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESM--------GGW--------LNKEIVKYFEIYADTC----FASFG 175 (287)
Q Consensus 116 ~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~--------ggw--------~~~~~~~~f~~ya~~v----~~~~~ 175 (287)
-.+.=+++++++++-||+|++=-+---.|.-+.+++ +.| +.| .-..|.+.++.. .+.||
T Consensus 93 q~~Lq~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG 171 (333)
T PF05089_consen 93 QAELQKKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG 171 (333)
T ss_dssp HHHHHHHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC
Confidence 356678999999999999999877666788777765 112 222 245666666554 55787
Q ss_pred CCccEEE--EecCCc
Q 023097 176 DRVKNWI--TINEPL 188 (287)
Q Consensus 176 d~V~~w~--t~NEP~ 188 (287)
...+|. +|||-.
T Consensus 172 -~~~~Y~~D~FnE~~ 185 (333)
T PF05089_consen 172 -TDHIYAADPFNEGG 185 (333)
T ss_dssp ---SEEE--TTTTS-
T ss_pred -CCceeCCCccCCCC
Confidence 444444 888854
No 186
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=35.88 E-value=51 Score=33.00 Aligned_cols=56 Identities=32% Similarity=0.484 Sum_probs=45.9
Q ss_pred CCcccccccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEE-eccC
Q 023097 69 GDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT-LYHW 141 (287)
Q Consensus 69 ~~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vt-L~h~ 141 (287)
.-.|+|-+..+++-|+.+++.|++++ |+|- | .++. +++|+++-++||.-+.| +-||
T Consensus 457 av~ASDAFFPF~D~i~~aA~aGi~aI--------IqPG--G-SirD------~eVI~aAde~giaMvfTg~RhF 513 (515)
T COG0138 457 AVLASDAFFPFPDGIDAAAKAGIKAI--------IQPG--G-SIRD------QEVIAAADEHGIAMVFTGVRHF 513 (515)
T ss_pred cEEeecccCCCcchHHHHHHcCCeEE--------ECCC--C-cccc------HHHHHHHHhcCcEEEEcccccc
Confidence 34689999999999999999999986 8885 5 5553 78999999999998877 3344
No 187
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=35.36 E-value=1.5e+02 Score=28.27 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=55.8
Q ss_pred cHHHHHHHHHcCCCccccccC-c-CccccCCCCCccChhHHHHHHHHHHHHHHCCCe-eEEEeccCCCcHHhHhhcCCCC
Q 023097 79 YKEDIDLIAKLGFDAYRFSIS-W-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGWL 155 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~-W-~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~-p~vtL~h~~~P~wl~~~~ggw~ 155 (287)
-++.+++|+++|++.+-++++ = .++...- |-..+ .+-+.+.++.++++|+. +-++|- +++|.
T Consensus 102 t~e~l~~lk~~G~nrisiGvQS~~d~vL~~l-~R~~~---~~~~~~ai~~lr~~G~~~v~~dlI-~GlPg---------- 166 (353)
T PRK05904 102 TQSQINLLKKNKVNRISLGVQSMNNNILKQL-NRTHT---IQDSKEAINLLHKNGIYNISCDFL-YCLPI---------- 166 (353)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ecCCC----------
Confidence 468899999999986555542 1 1222221 31223 45678899999999997 556664 45662
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCccEEEEecCCccc
Q 023097 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (287)
Q Consensus 156 ~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~~~ 190 (287)
++.+.|.+=.+.+.+.=-++|..+...=||+..
T Consensus 167 --qt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~ 199 (353)
T PRK05904 167 --LKLKDLDEVFNFILKHKINHISFYSLEIKEGSI 199 (353)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEEeeEecCCCh
Confidence 224445444444433222566666665577643
No 188
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=35.07 E-value=1.2e+02 Score=30.24 Aligned_cols=61 Identities=10% Similarity=0.015 Sum_probs=39.6
Q ss_pred cHHHHHHHHHcCCCccccccC--cCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCc
Q 023097 79 YKEDIDLIAKLGFDAYRFSIS--WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~--W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P 144 (287)
-++-+++|+++|++.+-++++ =.++...-.. ..+ .+-+.+.|+.++++||.+.+++- +++|
T Consensus 286 d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K-~~t---~~~~~~ai~~l~~~Gi~~~~~~I-~G~P 348 (497)
T TIGR02026 286 DADILHLYRRAGLVHISLGTEAAAQATLDHFRK-GTT---TSTNKEAIRLLRQHNILSEAQFI-TGFE 348 (497)
T ss_pred CHHHHHHHHHhCCcEEEEccccCCHHHHHHhcC-CCC---HHHHHHHHHHHHHCCCcEEEEEE-EECC
Confidence 345689999999987777764 1122221101 223 45678999999999999887754 3455
No 189
>PRK07094 biotin synthase; Provisional
Probab=34.73 E-value=67 Score=29.74 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=40.4
Q ss_pred CcHHHHHHHHHcCCCccccccC-c-CccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 78 RYKEDIDLIAKLGFDAYRFSIS-W-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~-W-~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
.-+++++.|+++|++.+-++++ - .++...-.. ..+ ++-+.+.++.+++.||.+..++-
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~-~~s---~~~~~~~i~~l~~~Gi~v~~~~i 186 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHP-GMS---FENRIACLKDLKELGYEVGSGFM 186 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCC-CCC---HHHHHHHHHHHHHcCCeecceEE
Confidence 4578999999999999888874 2 233332211 122 56788899999999998665543
No 190
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=34.51 E-value=3e+02 Score=25.34 Aligned_cols=105 Identities=10% Similarity=0.053 Sum_probs=70.0
Q ss_pred cHHHHHHHHHcCCCccccccC-cCccccCC--CCCcc----ChhHHHHHHHHHHHHHHCC---CeeEEEeccCCCcHHhH
Q 023097 79 YKEDIDLIAKLGFDAYRFSIS-WSRIFPDG--LGTKI----NMEGITFYNNIIDALLQKG---IQPYVTLYHWDLPLHLH 148 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~-W~ri~P~~--~g~~~----n~~~~~~y~~~i~~l~~~G---I~p~vtL~h~~~P~wl~ 148 (287)
-.+.|+..-++|.|++=+.|. |+-=.|.- .|... +....+..+.+++.+++.- -.--++|. ||.
T Consensus 9 ~~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pcdc~r~c~~~~~f~~~l~~~r~~ttpg~~~~l~lv------~lD 82 (265)
T cd08576 9 DLEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPCDCFRGCTAREMFDEILDYRRNGTTPGFRENLIFV------WLD 82 (265)
T ss_pred cHHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCccccccCCcHHHHHHHHHHHHHhcCCCCccceeEEE------EEE
Confidence 346788889999999999986 33222221 12111 3345677788888777653 11222222 222
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhCCC---ccEEEEecCCcc
Q 023097 149 ESMGGWLNKEIVKYFEIYADTCFASFGDR---VKNWITINEPLQ 189 (287)
Q Consensus 149 ~~~ggw~~~~~~~~f~~ya~~v~~~~~d~---V~~w~t~NEP~~ 189 (287)
-|.++.......+...+.|+.+.++|+.. ++.++.+..|.+
T Consensus 83 lK~~~~~~~~~~~ag~~la~~ll~~~w~~~~~~ra~~~~s~~~~ 126 (265)
T cd08576 83 LKNPDLCGECSINAGRDLARKLLEPYWNGGSGARALYGFSIPSI 126 (265)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeccc
Confidence 34456667788999999999999999965 888999999985
No 191
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.49 E-value=1.6e+02 Score=27.04 Aligned_cols=107 Identities=14% Similarity=0.185 Sum_probs=56.6
Q ss_pred HHHHHHHcCCC--ccccccCcCccc-----cCC-CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCC-C-c---HH--
Q 023097 82 DIDLIAKLGFD--AYRFSISWSRIF-----PDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD-L-P---LH-- 146 (287)
Q Consensus 82 Di~l~~~lG~~--~~R~si~W~ri~-----P~~-~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~-~-P---~w-- 146 (287)
-++.+++.||. ++=+.+.|..-- .++ ....+|.+.+--...+|++|++.|+++++.++-.. . | ..
T Consensus 30 v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~ 109 (292)
T cd06595 30 LMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPE 109 (292)
T ss_pred HHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHH
Confidence 34455555543 455555664311 011 01245555555578999999999999998775321 1 1 11
Q ss_pred hHhhc-----------CCCCChHHHHHHHHHHHHHHHHhCCCcc-EEEEecCCccc
Q 023097 147 LHESM-----------GGWLNKEIVKYFEIYADTCFASFGDRVK-NWITINEPLQT 190 (287)
Q Consensus 147 l~~~~-----------ggw~~~~~~~~f~~ya~~v~~~~~d~V~-~w~t~NEP~~~ 190 (287)
+.... ..+.+|+..+.|.+-....+...| |+ .|.=+|||...
T Consensus 110 ~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~G--idg~W~D~~E~~~~ 163 (292)
T cd06595 110 MAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQG--VDFWWLDWQQGNRT 163 (292)
T ss_pred HHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcC--CcEEEecCCCCccc
Confidence 11111 125676666655433333333333 44 58889998754
No 192
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=34.49 E-value=1.1e+02 Score=27.09 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=38.1
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCC--CCCccChhHHHHHHHHHHHHHHCCCeeEEEe-ccCCCc
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG--LGTKINMEGITFYNNIIDALLQKGIQPYVTL-YHWDLP 144 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~--~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL-~h~~~P 144 (287)
.++-+++++++|.+.+++...+ . |.+ .. +......+..+++.+.++++||+..+=. +|++.|
T Consensus 87 ~~~~i~~a~~lga~~i~~~~g~--~-~~~~~~~-~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 87 VAAAIRYARALGNKKINCLVGK--T-PAGFSSE-QIHATLVENLRYAANMLMKEDILLLIEPINHFDIP 151 (258)
T ss_pred HHHHHHHHHHhCCCEEEECCCC--C-CCCCCHH-HHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCC
Confidence 5666889999999998864322 1 211 01 1112234566777788889999877753 454433
No 193
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=34.44 E-value=40 Score=19.44 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHCCCee
Q 023097 118 TFYNNIIDALLQKGIQP 134 (287)
Q Consensus 118 ~~y~~~i~~l~~~GI~p 134 (287)
+--.++++.+++.||+|
T Consensus 18 ~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 18 DAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 34577888888999987
No 194
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=34.28 E-value=1.7e+02 Score=26.16 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=29.6
Q ss_pred cCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHC-CCeeEE
Q 023097 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQK-GIQPYV 136 (287)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~-GI~p~v 136 (287)
..+++.+++++++|++.+=+.+......+.. ..+. +..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~---~~~~---~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR---PLKK---ERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC---CCCH---HHHHHHHHHHHHcCCCcEEE
Confidence 4567777888888877776666544333322 1122 3445555555555 444433
No 195
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=33.78 E-value=2.5e+02 Score=25.19 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=38.5
Q ss_pred cCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEE
Q 023097 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV 136 (287)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~v 136 (287)
..+.+-+++++++|++.+=+++.-....+.. - .++ -.....+-+.+.++||++..
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~-~-~~~---~~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDDRLSR-L-DWS---REQRLALVNAIIETGVRIPS 70 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccchhhc-c-CCC---HHHHHHHHHHHHHcCCCcee
Confidence 3588999999999999998866543222222 1 223 24567788889999999754
No 196
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=33.37 E-value=1.3e+02 Score=29.52 Aligned_cols=92 Identities=18% Similarity=0.308 Sum_probs=52.7
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCC---CCCccChhHHHHHHHHHHHHHHCCC-eeEEEeccCCCcHHhHhhcCCC
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGI-QPYVTLYHWDLPLHLHESMGGW 154 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~---~g~~~n~~~~~~y~~~i~~l~~~GI-~p~vtL~h~~~P~wl~~~~ggw 154 (287)
-++.+++|+++|++.+-++++ .+-++- -+ .. ...+-..+.++.+++.|+ .+.++|- +++|.
T Consensus 150 t~e~l~~l~~aG~~risiGvq--S~~~~~L~~l~-r~--~~~~~~~~ai~~l~~~G~~~v~~dli-~GlPg--------- 214 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQ--DFDPEVQKAVN-RI--QPFEFTFALVEAARELGFTSINIDLI-YGLPK--------- 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCC--CCCHHHHHHhC-CC--CCHHHHHHHHHHHHHcCCCcEEEEEE-ccCCC---------
Confidence 568899999999996666653 222211 02 11 125667889999999999 5666664 45552
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCccEEEEecCCc
Q 023097 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEPL 188 (287)
Q Consensus 155 ~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~ 188 (287)
.+ .+.|.+-.+.+.+.=-+.|..+...+.|.
T Consensus 215 qt---~e~~~~~l~~~~~l~~~~i~~y~l~~~p~ 245 (453)
T PRK09249 215 QT---PESFARTLEKVLELRPDRLAVFNYAHVPW 245 (453)
T ss_pred CC---HHHHHHHHHHHHhcCCCEEEEccCccchh
Confidence 23 34444545554442224454444333443
No 197
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=32.93 E-value=91 Score=32.50 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=35.9
Q ss_pred HHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCC----ChH-HHHHHHHHHHHHHHHhCCCccEEEEecCCcc
Q 023097 122 NIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWL----NKE-IVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (287)
Q Consensus 122 ~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~----~~~-~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~~ 189 (287)
.++.++++++=.+-+....|..|.|+.. ||. ++. +..+..++..-+.+.+|-.++|--++||=..
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~~---g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~~ 185 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVGN---GWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERGF 185 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGGT---TSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS--
T ss_pred hhHHHHHhhCCCCeEEEeccCCCccccC---CCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccCC
Confidence 4788888887666666677999999964 433 222 3344456666677888888998889999653
No 198
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=32.65 E-value=1.4e+02 Score=28.88 Aligned_cols=125 Identities=10% Similarity=0.054 Sum_probs=70.1
Q ss_pred HHHHHHHHHcCCCccccccC-c-CccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCCh
Q 023097 80 KEDIDLIAKLGFDAYRFSIS-W-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNK 157 (287)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~-W-~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~ 157 (287)
++.++.|+++|+|.+-+++. - ..+...- | +.. ..+-..+.++.+++.+..+-++|- +++|.
T Consensus 111 ~e~l~~l~~~GvnRiSiGvQS~~d~~L~~l-g-R~h--~~~~~~~ai~~~~~~~~~v~~DlI-~GlPg------------ 173 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGVQSLKEDDLKKL-G-RTH--DCMQAIKTIEAANTIFPRVSFDLI-YARSG------------ 173 (390)
T ss_pred HHHHHHHHHCCCCEEEEECCcCCHHHHHHc-C-CCC--CHHHHHHHHHHHHHhCCcEEEEee-cCCCC------------
Confidence 58999999999986666552 2 1222221 3 322 135566677888888888888887 66662
Q ss_pred HHHHHHHHHHHHHHHHhCCCccEEEEecCCccccccCccccccC-CCCCCCCCchhHHHHHHHHHHH
Q 023097 158 EIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFA-PGRHQHSSTEPYLVAHHQILAH 223 (287)
Q Consensus 158 ~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~~~~~~gy~~g~~~-p~~~~~~~~~~~~~~hn~l~AH 223 (287)
++.+.+.+=++.+++-=-++|..+...=||+.....-+..|.+. |.. ....++|+.+..++.++
T Consensus 174 qt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~--~~~~~~~~~~~~~L~~~ 238 (390)
T PRK06582 174 QTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKLFKEGNLILPHS--DAAAEMYEWTNHYLESK 238 (390)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCEEccCChHHHHHhcCCCCCCCh--HHHHHHHHHHHHHHHHc
Confidence 12334444455555433367888877777765433223333332 221 12234455555555543
No 199
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=32.57 E-value=1.4e+02 Score=30.78 Aligned_cols=48 Identities=17% Similarity=0.145 Sum_probs=33.0
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEecc
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h 140 (287)
.++|+++.++.|++.+|+..+-+.+ +-....++.++++|..+.+++..
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~ 145 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV--------------RNMEVAIKAAKKAGAHVQGTISY 145 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH--------------HHHHHHHHHHHHcCCEEEEEEEe
Confidence 3456789999999999988654333 22455567777777777766643
No 200
>PRK10658 putative alpha-glucosidase; Provisional
Probab=31.89 E-value=4.1e+02 Score=27.75 Aligned_cols=103 Identities=16% Similarity=0.195 Sum_probs=62.0
Q ss_pred HHHHHHcCCC--ccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCC---CcHHhHhh-------
Q 023097 83 IDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD---LPLHLHES------- 150 (287)
Q Consensus 83 i~l~~~lG~~--~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~---~P~wl~~~------- 150 (287)
++.+++.|+. ++-+++.|.+-.--. ...+|.+.+---..+|++|+++|+++++.+.-+- .|.+-...
T Consensus 289 ~~~~r~~~iP~d~i~lD~~w~~~~~~~-~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk 367 (665)
T PRK10658 289 IDGMAERDLPLHVFHFDCFWMKEFQWC-DFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLLK 367 (665)
T ss_pred HHHHHHcCCCceEEEEchhhhcCCcee-eeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEEE
Confidence 4666777765 566666665432111 1245544444457899999999999998765322 22221110
Q ss_pred -----------------cCCCCChHHHHHHHHHHHHHHHHhCCCccEEEEecCCc
Q 023097 151 -----------------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPL 188 (287)
Q Consensus 151 -----------------~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~ 188 (287)
.-.+.||+..+.|.+..+.+.+ .| ---+|.=+||+.
T Consensus 368 ~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~G-vdgfw~D~gE~~ 420 (665)
T PRK10658 368 RPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MG-VDCFKTDFGERI 420 (665)
T ss_pred CCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cC-CcEEEecCCcee
Confidence 0126789999999888877554 43 223477788873
No 201
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=31.45 E-value=36 Score=24.28 Aligned_cols=39 Identities=18% Similarity=0.441 Sum_probs=31.2
Q ss_pred CccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCC
Q 023097 101 SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD 142 (287)
Q Consensus 101 ~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~ 142 (287)
+++.|.. + .=-.++++..-+++.-|.++|| +.+.|++-+
T Consensus 19 s~l~p~~-~-~d~~kaldiCaeIL~cLE~R~i-sWl~LFqlt 57 (64)
T PF03511_consen 19 SYLAPKE-G-ADSLKALDICAEILGCLEKRKI-SWLVLFQLT 57 (64)
T ss_pred HhcCccc-c-cccHHHHHHHHHHHHHHHhCCC-cHHHhhhcc
Confidence 5788885 5 4456789999999999999999 888777543
No 202
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=31.22 E-value=5.3e+02 Score=25.52 Aligned_cols=68 Identities=24% Similarity=0.411 Sum_probs=43.8
Q ss_pred HHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHH----HHHHCCCee-EEEeccCCCcHHhHhhcCCCCCh
Q 023097 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIID----ALLQKGIQP-YVTLYHWDLPLHLHESMGGWLNK 157 (287)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~----~l~~~GI~p-~vtL~h~~~P~wl~~~~ggw~~~ 157 (287)
++.+.+||+..|=|- =..|.|++ . .+. +..+..+++++ .+.+-||++ ++|..-|..|.+.. |+.+||
T Consensus 84 Fef~~kLg~~~~~FH--D~D~~peg-~-~~~-E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~TnP 155 (434)
T TIGR02630 84 FEFFEKLGVPYYCFH--DRDIAPEG-A-SLR-ETNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH---GAATSP 155 (434)
T ss_pred HHHHHHhCCCeeccC--ccccCCCC-C-CHH-HHHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC---CcCCCC
Confidence 566899999986554 34588876 2 222 22233444444 455779985 56677788898753 888887
Q ss_pred H
Q 023097 158 E 158 (287)
Q Consensus 158 ~ 158 (287)
+
T Consensus 156 d 156 (434)
T TIGR02630 156 D 156 (434)
T ss_pred C
Confidence 6
No 203
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=31.14 E-value=1.6e+02 Score=27.32 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhC
Q 023097 118 TFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (287)
Q Consensus 118 ~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~ 175 (287)
....+-|..|+++|+++++++--++... ...++...+.|++....+++.|+
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG~~~~~-------~~~~~~~~~~fa~sl~~~~~~~g 110 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGGANGHV-------DLNHTAQEDNFVDSIVAIIKEYG 110 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCcc-------ccCCHHHHHHHHHHHHHHHHHhC
Confidence 3457778899999999999986433211 11233444555555555555554
No 204
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=30.91 E-value=1.6e+02 Score=29.67 Aligned_cols=48 Identities=19% Similarity=0.262 Sum_probs=30.4
Q ss_pred ccCcH-----HHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEE
Q 023097 76 YHRYK-----EDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (287)
Q Consensus 76 ~~~~~-----eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vt 137 (287)
|..|. .|++..++.|++.+|+....+.+ .-....++.+++.|.....+
T Consensus 91 y~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv--------------~nl~~ai~~vk~ag~~~~~~ 143 (499)
T PRK12330 91 YRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP--------------RNLEHAMKAVKKVGKHAQGT 143 (499)
T ss_pred ccCcchhHHHHHHHHHHHcCCCEEEEEecCChH--------------HHHHHHHHHHHHhCCeEEEE
Confidence 55555 47899999999999987654333 23444555555555554333
No 205
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=30.69 E-value=2.7e+02 Score=26.17 Aligned_cols=164 Identities=20% Similarity=0.183 Sum_probs=94.0
Q ss_pred HHHHHHcCCCccccc---cC-cCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCC-------------c-
Q 023097 83 IDLIAKLGFDAYRFS---IS-WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL-------------P- 144 (287)
Q Consensus 83 i~l~~~lG~~~~R~s---i~-W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~-------------P- 144 (287)
+...++-|+..+=.. ++ -.+..|...+ -++++.+.-+.++.+.++++|-++++=|+|.+. |
T Consensus 42 y~~rA~GG~Glii~~~~~v~~~~~~~~~~~~-i~~d~~i~~~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~ps 120 (341)
T PF00724_consen 42 YERRAKGGAGLIITEATAVSPEGRGFPGQPG-IWDDEQIPGLKKLADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPS 120 (341)
T ss_dssp HHHHHHTTTSEEEEEEEESSGGGSSSTTSEB-SSSHHHHHHHHHHHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESS
T ss_pred HHHHhhcCCceEEecccccccccccccccch-hchhhHHHHHHHHHHHHHhcCccceeeccccccccCcccCCCCccCcc
Confidence 344566666655433 22 1222333224 568889999999999999999999999999441 1
Q ss_pred --HHhHhhc--CCCC----C----hHHHHHHHHHHHHHHHHhC-CCccEEEEecCCccccccCcccccc-CCCCC-CCCC
Q 023097 145 --LHLHESM--GGWL----N----KEIVKYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIF-APGRH-QHSS 209 (287)
Q Consensus 145 --~wl~~~~--ggw~----~----~~~~~~f~~ya~~v~~~~~-d~V~~w~t~NEP~~~~~~gy~~g~~-~p~~~-~~~~ 209 (287)
.++.... -|.. + .++++.|++=|+.+.+ =| |-|. +.+-.||+...| .|... ..+
T Consensus 121 a~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~-AGfDGVE---------IH~ahGyLl~qFLSp~~N~RtD- 189 (341)
T PF00724_consen 121 APSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAKE-AGFDGVE---------IHAAHGYLLSQFLSPLTNRRTD- 189 (341)
T ss_dssp CSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHHH-TT-SEEE---------EEESTTSHHHHHHSTTT---SS-
T ss_pred cccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHH-hccCeEe---------ecccchhhhhheeeeccCCCch-
Confidence 0111100 0100 1 2467777776666665 23 3332 345668887654 45421 111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCceeeeCCCCHHHH
Q 023097 210 TEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIEDK 261 (287)
Q Consensus 210 ~~~~~~~hn~l~AHa~a~~~~r~~~~~~~~~kIG~~~~~~~~~P~~~~p~Dv 261 (287)
+.--...|=++-...+++.+|+..+ ++..||+-++.....+.....+|.
T Consensus 190 -eYGGs~ENR~Rf~~Eii~aIr~~vg--~d~~v~~Rls~~~~~~~g~~~~e~ 238 (341)
T PF00724_consen 190 -EYGGSLENRARFLLEIIEAIREAVG--PDFPVGVRLSPDDFVEGGITLEET 238 (341)
T ss_dssp -TTSSSHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEETTCSSTTSHHSHHH
T ss_pred -hhhhhhchhhHHHHHHHHHHHHHhc--CCceEEEEEeeecccCCCCchHHH
Confidence 1112345666667778888888653 456699999988877765333443
No 206
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=30.62 E-value=1.4e+02 Score=21.86 Aligned_cols=40 Identities=25% Similarity=0.418 Sum_probs=32.1
Q ss_pred HHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEe
Q 023097 84 DLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 84 ~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
+.++.+|+.++|-| .+. | +.+-+.++++.++ .|..+.+|.
T Consensus 27 ~~~~~~G~~~iRGS-------s~r-g------g~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 27 RVLERFGFRTIRGS-------SSR-G------GARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHcCCCeEEeC-------CCC-c------HHHHHHHHHHHHH-CCCeEEEeC
Confidence 67899999999999 232 4 3677899999998 888887775
No 207
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=30.56 E-value=1.1e+02 Score=26.62 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCc
Q 023097 119 FYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRV 178 (287)
Q Consensus 119 ~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V 178 (287)
+.-.++..+++.|++.+++. |-+.|.-.|.++ .+..|.++++.++-+++|.+
T Consensus 106 ~~~~~~r~~~~~g~~v~vN~---DGlEWkR~KW~~-----~~k~~lk~~E~~avk~ad~l 157 (185)
T PF09314_consen 106 FFLPFLRKLRKKGGKVVVNM---DGLEWKRAKWGR-----PAKKYLKFSEKLAVKYADRL 157 (185)
T ss_pred HHHHHHHhhhhcCCcEEECC---CcchhhhhhcCH-----HHHHHHHHHHHHHHHhCCEE
Confidence 44455666667777777765 346676555222 47899999999999999874
No 208
>PTZ00445 p36-lilke protein; Provisional
Probab=30.48 E-value=81 Score=28.21 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=39.7
Q ss_pred HHHHHHcCCCccccccCcCccccCCCCCccChh---------HHHHHHHHHHHHHHCCCeeEEEec
Q 023097 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINME---------GITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~---------~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
++++++.|++.+=+.++=.-|.--.-| ..++. +=.-...++.+|+++||.++|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~HsgG-~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSGG-YIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhccc-ccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 688999999999888876655422113 33332 234477899999999999988765
No 209
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=30.01 E-value=2.4e+02 Score=25.62 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=48.4
Q ss_pred CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCccEEEEecCC
Q 023097 108 LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEP 187 (287)
Q Consensus 108 ~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP 187 (287)
+| ++| ++-+++.++.+.+.|+.-++.+-+- |-...-+.+...+..+.+.+.-+++++.+.-....
T Consensus 13 ~g-~iD---~~~~~~~i~~l~~~Gv~Gi~~~Gst-----------GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~ 77 (285)
T TIGR00674 13 DG-SVD---FAALEKLIDFQIENGTDAIVVVGTT-----------GESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSN 77 (285)
T ss_pred CC-CcC---HHHHHHHHHHHHHcCCCEEEECccC-----------cccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCc
Confidence 47 899 4668999999999999999977531 11112235677777888888888888887766655
Q ss_pred cc
Q 023097 188 LQ 189 (287)
Q Consensus 188 ~~ 189 (287)
+.
T Consensus 78 s~ 79 (285)
T TIGR00674 78 AT 79 (285)
T ss_pred cH
Confidence 43
No 210
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=29.79 E-value=4.8e+02 Score=24.58 Aligned_cols=137 Identities=15% Similarity=0.125 Sum_probs=72.7
Q ss_pred ccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHH-------------hHhhc-C----CCCC---hHHHHHHHHHHHH
Q 023097 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLH-------------LHESM-G----GWLN---KEIVKYFEIYADT 169 (287)
Q Consensus 111 ~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~w-------------l~~~~-g----gw~~---~~~~~~f~~ya~~ 169 (287)
-++++-+.-++++++.++++|-.+++=|+|.+.-.. +.... + .... .++++.|++=|++
T Consensus 70 l~~d~~i~~~~~l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~r 149 (343)
T cd04734 70 ASDDEIIPGFRRLAEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARR 149 (343)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 567788899999999999999999999999643111 00000 0 0111 2467777775554
Q ss_pred HHHHhC-CCccEEEEecCCccccccCccccccC-CCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEeee
Q 023097 170 CFASFG-DRVKNWITINEPLQTAVNGYCTGIFA-PGR-HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVV 246 (287)
Q Consensus 170 v~~~~~-d~V~~w~t~NEP~~~~~~gy~~g~~~-p~~-~~~~~~~~~~~~hn~l~AHa~a~~~~r~~~~~~~~~kIG~~~ 246 (287)
+.+ -| |-|. +.+-.||+...|- |.. +..+... -.+-|-..-....++.+|+... ++..|++-+
T Consensus 150 a~~-aGfDgVe---------ih~ahGyLl~qFlsp~~N~RtD~yG--GslenR~r~~~eiv~~ir~~vg--~~~~v~iRl 215 (343)
T cd04734 150 CQA-GGLDGVE---------LQAAHGHLIDQFLSPLTNRRTDEYG--GSLENRMRFLLEVLAAVRAAVG--PDFIVGIRI 215 (343)
T ss_pred HHH-cCCCEEE---------EccccchHHHHhhCCCcCCCCCcCC--CCHHHHhHHHHHHHHHHHHHcC--CCCeEEEEe
Confidence 433 33 2232 3344577655442 321 0001000 1133444444556677776532 345677777
Q ss_pred cCceeeeCCCCHHHH
Q 023097 247 DCEWAEANSDKIEDK 261 (287)
Q Consensus 247 ~~~~~~P~~~~p~Dv 261 (287)
+...+.+...+++|.
T Consensus 216 ~~~~~~~~G~~~~e~ 230 (343)
T cd04734 216 SGDEDTEGGLSPDEA 230 (343)
T ss_pred ehhhccCCCCCHHHH
Confidence 755544433345553
No 211
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.59 E-value=1.3e+02 Score=27.24 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=39.0
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCC
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD 142 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~ 142 (287)
..+-++.++++|++++-+-...+|.-..+ .++... ...+-+.+.++++.......|-.
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P~~w~~~---~~~~~~---~~~~~~~~~~~~~~~~~i~~Hap 70 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSPRWWRRP---MLEEEV---IDWFKAALETNKNLSQIVLVHAP 70 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCccccCCC---CCCHHH---HHHHHHHHHHcCCCCcceeccCC
Confidence 45678999999999999988888876544 344333 34444557888887443344533
No 212
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=29.14 E-value=1.3e+02 Score=28.58 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=43.8
Q ss_pred cHHHHHHHHHcCCCccccccC----cCccc---cC----C----CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCC
Q 023097 79 YKEDIDLIAKLGFDAYRFSIS----WSRIF---PD----G----LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL 143 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~----W~ri~---P~----~----~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~ 143 (287)
.++-|+.|+..++|.+.+-++ |+-=. |+ + .| .+.. +=++++|+.++++||++|.-+ |+
T Consensus 20 ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~-~YT~---~di~eiv~yA~~rgI~vIPEI---D~ 92 (348)
T cd06562 20 IKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSE-VYTP---EDVKEIVEYARLRGIRVIPEI---DT 92 (348)
T ss_pred HHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCc-eECH---HHHHHHHHHHHHcCCEEEEec---cC
Confidence 566789999999998876542 32211 21 1 12 3453 458999999999999999987 67
Q ss_pred cHHhH
Q 023097 144 PLHLH 148 (287)
Q Consensus 144 P~wl~ 148 (287)
|.+..
T Consensus 93 PGH~~ 97 (348)
T cd06562 93 PGHTG 97 (348)
T ss_pred chhhH
Confidence 76643
No 213
>PTZ00445 p36-lilke protein; Provisional
Probab=28.99 E-value=1.1e+02 Score=27.40 Aligned_cols=52 Identities=19% Similarity=0.343 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHh-hcCCCCChH---------HHHHHHHHHHHHHH
Q 023097 117 ITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE-SMGGWLNKE---------IVKYFEIYADTCFA 172 (287)
Q Consensus 117 ~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~-~~ggw~~~~---------~~~~f~~ya~~v~~ 172 (287)
-+.-+.+++.|++.||+.+++= || .-|.. ..|||.++. ....|..+...+-+
T Consensus 28 ~~~~~~~v~~L~~~GIk~Va~D--~D--nTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~ 89 (219)
T PTZ00445 28 HESADKFVDLLNECGIKVIASD--FD--LTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN 89 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEEec--ch--hhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHH
Confidence 3556888999999999999863 22 22222 248999886 44556665555443
No 214
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.98 E-value=3.2e+02 Score=24.27 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=36.6
Q ss_pred CcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEE
Q 023097 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV 136 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~v 136 (287)
.+++-++.++++|++.+=+++.=.+..+.. . .++. .....+-+.+.++||++..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~-~-~~~~---~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDERLAR-L-DWSK---EERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCccccccc-c-cCCH---HHHHHHHHHHHHcCCCceE
Confidence 468899999999999988865411111111 2 2342 4467788899999999764
No 215
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.47 E-value=76 Score=28.41 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHcCCCccccccCcCcc-ccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 78 RYKEDIDLIAKLGFDAYRFSISWSRI-FPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri-~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
..+.-++.++.+|.+.+|+. ..... .|.. . ..-...++.++.+.+.+.++||+..+=-+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~-~~~~~~~~~~-~-~~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 95 IMKKAIRLAQDLGIRTIQLA-GYDVYYEEKS-E-ETRQRFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHhCCCEEEEC-Cccccccccc-H-HHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 35566888999999999974 11111 1111 1 11134567788889999999998877543
No 216
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=27.95 E-value=88 Score=28.84 Aligned_cols=62 Identities=26% Similarity=0.363 Sum_probs=48.3
Q ss_pred ccCcHHHHHHHHHcCCCccccccCcCccccCC-CCCccChhHHHHHHHHHHHHHHCCCeeEEEe
Q 023097 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
-..-.+|++...++|++.+-+.++=|...-.. -+ .=-++.++.+.++++.++++|+++-+++
T Consensus 73 ~r~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~-~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 73 IRANKEDLKLVKEMGLKETGILMSVSDYHIFKKLK-MTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred ecCCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC-cCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44568999999999999988887655443332 13 3345789999999999999999999888
No 217
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=27.88 E-value=49 Score=29.59 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCccEEEEecCCcc
Q 023097 165 IYADTCFASFGDRVKNWITINEPLQ 189 (287)
Q Consensus 165 ~ya~~v~~~~~d~V~~w~t~NEP~~ 189 (287)
.+.+.+.+. +..+++++.||||+.
T Consensus 54 ~~~~~v~~~-~~~~~~ll~fNEPD~ 77 (239)
T PF11790_consen 54 DWLANVQNA-HPGSKHLLGFNEPDL 77 (239)
T ss_pred HHHHHHHhh-ccCccceeeecCCCC
No 218
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=27.85 E-value=1.1e+02 Score=28.98 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=34.8
Q ss_pred HHHHHHcCCCccccccCcC---ccccCCCCCccCh----hHHHHHHHHHHHHHHCCCeeEEEeccCC
Q 023097 83 IDLIAKLGFDAYRFSISWS---RIFPDGLGTKINM----EGITFYNNIIDALLQKGIQPYVTLYHWD 142 (287)
Q Consensus 83 i~l~~~lG~~~~R~si~W~---ri~P~~~g~~~n~----~~~~~y~~~i~~l~~~GI~p~vtL~h~~ 142 (287)
++++|++|++.+=+.-.-. -+.|+... .+|- -.-+...++.++|+++||++.+-++++|
T Consensus 97 ~~~ak~aGakY~VlTakHHDGF~LW~S~~t-~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~d 162 (346)
T PF01120_consen 97 AKLAKDAGAKYVVLTAKHHDGFCLWPSKYT-DYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWD 162 (346)
T ss_dssp HHHHHHTT-SEEEEEEE-TT--BSS--TT--SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSS
T ss_pred HHHHHHcCCCEEEeehhhcCccccCCCCCC-cccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchH
Confidence 7999999999764321100 02233211 2221 1247899999999999999999887654
No 219
>PRK06256 biotin synthase; Validated
Probab=27.47 E-value=97 Score=28.88 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=38.9
Q ss_pred CcHHHHHHHHHcCCCccccccC-cCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEe
Q 023097 78 RYKEDIDLIAKLGFDAYRFSIS-WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~-W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
.-++.++.|+++|++.+-++++ =.++.+.-.. .- .++.+.+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~-~~---t~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVT-TH---TYEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCC-CC---CHHHHHHHHHHHHHcCCeeccCe
Confidence 5678899999999998877653 2223333211 11 25667789999999999865543
No 220
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=27.46 E-value=3.3e+02 Score=27.29 Aligned_cols=66 Identities=17% Similarity=0.287 Sum_probs=47.0
Q ss_pred cCcHHHHHHHHHcCCCccccc-cCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHh
Q 023097 77 HRYKEDIDLIAKLGFDAYRFS-ISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHL 147 (287)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~s-i~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl 147 (287)
+|.++-.++++++|+|..-+. +. +-....- -++..-+.-...+-|..+.+||++.+++. |..|.-|
T Consensus 183 qR~kDYAR~laSiGINg~v~NNVN---vk~~e~~-lit~~fl~k~aklAdiFR~YGIK~yLsin-faSP~~l 249 (684)
T COG3661 183 QRMKDYARALASIGINGTVLNNVN---VKKAESY-LITAPFLAKAAKLADIFRPYGIKVYLSIN-FASPMEL 249 (684)
T ss_pred HHHHHHHHHHhhcCcceEEecccc---cchhhhh-eechHhHHHHHHHHHHhhhccceEEEEec-cCCcccc
Confidence 566777889999999987664 22 1111101 24555577788899999999999999986 7889765
No 221
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.38 E-value=1.6e+02 Score=27.92 Aligned_cols=62 Identities=23% Similarity=0.402 Sum_probs=42.6
Q ss_pred cHHHHHHHHHcCCCcccccc----Cc-------CccccCC--------------------CCCccChhHHHHHHHHHHHH
Q 023097 79 YKEDIDLIAKLGFDAYRFSI----SW-------SRIFPDG--------------------LGTKINMEGITFYNNIIDAL 127 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si----~W-------~ri~P~~--------------------~g~~~n~~~~~~y~~~i~~l 127 (287)
.++-|+.|+..++|.+.+-+ +| +.+-..+ .| .+. -+=++++++.+
T Consensus 20 ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~-~YT---~~di~eiv~yA 95 (357)
T cd06563 20 VKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGG-FYT---QEEIREIVAYA 95 (357)
T ss_pred HHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCc-eEC---HHHHHHHHHHH
Confidence 56678999999999887655 23 2221110 12 344 35589999999
Q ss_pred HHCCCeeEEEeccCCCcHHh
Q 023097 128 LQKGIQPYVTLYHWDLPLHL 147 (287)
Q Consensus 128 ~~~GI~p~vtL~h~~~P~wl 147 (287)
+++||++|.-+ |+|.+.
T Consensus 96 ~~rgI~VIPEI---D~PGH~ 112 (357)
T cd06563 96 AERGITVIPEI---DMPGHA 112 (357)
T ss_pred HHcCCEEEEec---CCchhH
Confidence 99999999986 567654
No 222
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=27.30 E-value=1.6e+02 Score=28.53 Aligned_cols=87 Identities=20% Similarity=0.328 Sum_probs=59.3
Q ss_pred HHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccC--CCcHH-----hHh--------
Q 023097 85 LIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW--DLPLH-----LHE-------- 149 (287)
Q Consensus 85 l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~--~~P~w-----l~~-------- 149 (287)
.|.-+|+.+.|+.+.|. | .+|. +...++|+...++||.-|=|-.-+ +.-.- |.+
T Consensus 12 ~~s~lgfG~MRlp~~~~-------~-~id~---~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 12 ELSILGFGCMRLPLKEQ-------G-SIDE---ENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred ccceeccceeecccccC-------C-CccH---HHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 34558999999999988 4 6774 668999999999999988876433 32111 111
Q ss_pred --hcCCCCChHHHHHHHHHHHHHHHHhC-CCccEEEE
Q 023097 150 --SMGGWLNKEIVKYFEIYADTCFASFG-DRVKNWIT 183 (287)
Q Consensus 150 --~~ggw~~~~~~~~f~~ya~~v~~~~~-d~V~~w~t 183 (287)
|...|.- +..+.|.++-..=.++++ |+++++.+
T Consensus 81 aTKlp~~~~-~~~edm~r~fneqLekl~~Dy~D~yli 116 (391)
T COG1453 81 ATKLPSWPV-KDREDMERIFNEQLEKLGTDYIDYYLI 116 (391)
T ss_pred EeecCCccc-cCHHHHHHHHHHHHHHhCCchhhhhhh
Confidence 1122322 336778888888888887 47888774
No 223
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=27.07 E-value=5.6e+02 Score=24.67 Aligned_cols=96 Identities=16% Similarity=0.174 Sum_probs=53.4
Q ss_pred ccccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec-cCCCcHHhHhhcC
Q 023097 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-HWDLPLHLHESMG 152 (287)
Q Consensus 74 d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~-h~~~P~wl~~~~g 152 (287)
.-.-...+-++.++++|++.+= +....+.|-. - ...... ..++++-+.|.++||++...+. -+..|.+ +.|
T Consensus 29 ~~~~~~~e~i~~la~~GfdgVE--~~~~dl~P~~-~-~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~---~~g 100 (382)
T TIGR02631 29 RTALDPVEAVHKLAELGAYGVT--FHDDDLIPFG-A-PPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVF---KDG 100 (382)
T ss_pred CCCcCHHHHHHHHHHhCCCEEE--ecccccCCCC-C-ChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCccc---cCC
Confidence 3344577889999999999873 4444555643 1 111111 3467788889999999664332 2222333 125
Q ss_pred CCCChH--HHHHHHHHHH---HHHHHhCCC
Q 023097 153 GWLNKE--IVKYFEIYAD---TCFASFGDR 177 (287)
Q Consensus 153 gw~~~~--~~~~f~~ya~---~v~~~~~d~ 177 (287)
+..+++ ..+.=.++.+ .++..+|-.
T Consensus 101 ~las~d~~vR~~ai~~~kraId~A~eLGa~ 130 (382)
T TIGR02631 101 GFTSNDRSVRRYALRKVLRNMDLGAELGAE 130 (382)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 666643 2222222222 245667654
No 224
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=27.03 E-value=5.7e+02 Score=24.55 Aligned_cols=144 Identities=17% Similarity=0.201 Sum_probs=84.5
Q ss_pred ccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCC-----CcHH---------hHhhcCC-CC------Ch---
Q 023097 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD-----LPLH---------LHESMGG-WL------NK--- 157 (287)
Q Consensus 102 ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~-----~P~w---------l~~~~gg-w~------~~--- 157 (287)
++.|...| -++.+-+.-+.++.++++++|=+.++=|.|-+ ...| +... ++ .. ..
T Consensus 68 ~~~~~~~~-l~~d~~i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~-~~~~~~pr~mt~~eI~ 145 (363)
T COG1902 68 RGYPGQPG-LWSDAQIPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAP-GGRRATPRELTEEEIE 145 (363)
T ss_pred ccCCCCCc-cCChhHhHHHHHHHHHHHhcCCeEEEEeccCcccccccccCCCcccCCCccccc-cCCCCCCccCCHHHHH
Confidence 35665546 56666699999999999999999999999976 1111 1111 11 11 11
Q ss_pred HHHHHHHHHHHHHHHHhC-CCccEEEEecCCccccccCcccccc-CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhcc
Q 023097 158 EIVKYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIF-APGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYK 235 (287)
Q Consensus 158 ~~~~~f~~ya~~v~~~~~-d~V~~w~t~NEP~~~~~~gy~~g~~-~p~~~~~~~~~~~~~~hn~l~AHa~a~~~~r~~~~ 235 (287)
++++.|++=|++..+ =| |-|. +..-.||+.-.| .|.. +...-+.-=..-|-++---.+++.+|+...
T Consensus 146 ~ii~~f~~AA~rA~~-AGFDgVE---------IH~AhGYLi~qFlsp~t-N~RtD~YGGSlENR~Rf~~EVv~aVr~~vg 214 (363)
T COG1902 146 EVIEDFARAARRAKE-AGFDGVE---------IHGAHGYLLSQFLSPLT-NKRTDEYGGSLENRARFLLEVVDAVREAVG 214 (363)
T ss_pred HHHHHHHHHHHHHHH-cCCCEEE---------EeeccchHHHHhcCCcc-CCCCCccCCcHHHHHHHHHHHHHHHHHHhC
Confidence 456677765555544 22 3342 456678887544 4443 111111112245666666677888887653
Q ss_pred CCCCceEEeeecCcee-eeCCCCHHH
Q 023097 236 DKQGGNIGLVVDCEWA-EANSDKIED 260 (287)
Q Consensus 236 ~~~~~kIG~~~~~~~~-~P~~~~p~D 260 (287)
+...||+-++...+ .....+.++
T Consensus 215 --~~~~vg~Rls~~d~~~~~g~~~~e 238 (363)
T COG1902 215 --ADFPVGVRLSPDDFFDGGGLTIEE 238 (363)
T ss_pred --CCceEEEEECccccCCCCCCCHHH
Confidence 34459998887776 332345555
No 225
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=26.96 E-value=3.6e+02 Score=23.92 Aligned_cols=52 Identities=10% Similarity=0.037 Sum_probs=34.5
Q ss_pred CcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEE
Q 023097 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV 136 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~v 136 (287)
.+++.+++++++|++.+=+.......++. .+.. ...+++-+.+.++||++..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~----~~~~---~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAP----DLKA---GGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCcccccc----ccCc---hHHHHHHHHHHHcCCeEEE
Confidence 47899999999999998774332222211 1221 2356677788899998754
No 226
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.91 E-value=1.8e+02 Score=27.16 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=42.3
Q ss_pred cHHHHHHHHHcCCCcccccc--CcCc---cccC-----------------------CCCCccChhHHHHHHHHHHHHHHC
Q 023097 79 YKEDIDLIAKLGFDAYRFSI--SWSR---IFPD-----------------------GLGTKINMEGITFYNNIIDALLQK 130 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si--~W~r---i~P~-----------------------~~g~~~n~~~~~~y~~~i~~l~~~ 130 (287)
.++=|+.|+..++|.+-+-+ +|+- ..|. ..| .+.. +=++++++.++++
T Consensus 19 ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~-~YT~---~di~eiv~yA~~r 94 (326)
T cd06564 19 LKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDG-YYTK---EEFKELIAYAKDR 94 (326)
T ss_pred HHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCC-cccH---HHHHHHHHHHHHc
Confidence 56668999999999877533 1211 1111 113 4553 5589999999999
Q ss_pred CCeeEEEeccCCCcHHhH
Q 023097 131 GIQPYVTLYHWDLPLHLH 148 (287)
Q Consensus 131 GI~p~vtL~h~~~P~wl~ 148 (287)
||++|.-+ |+|.+..
T Consensus 95 gI~vIPEI---D~PGH~~ 109 (326)
T cd06564 95 GVNIIPEI---DSPGHSL 109 (326)
T ss_pred CCeEeccC---CCcHHHH
Confidence 99999876 6776643
No 227
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=26.87 E-value=78 Score=31.89 Aligned_cols=55 Identities=24% Similarity=0.405 Sum_probs=44.5
Q ss_pred CcccccccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEE-eccC
Q 023097 70 DVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT-LYHW 141 (287)
Q Consensus 70 ~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vt-L~h~ 141 (287)
-.|+|-+..+++-++..++.|+.++ |+|- | .+.. +++|++|.++||.-+.| .-||
T Consensus 454 vlASDAFFPF~D~ve~aa~aGi~aI--------iQPG--G-SiRD------~evI~aa~e~giaMvfTg~RhF 509 (511)
T TIGR00355 454 SLASDAFFPFRDGVEEAAAAGITCI--------IQPG--G-SMRD------EDSIWAADEHGIVMVFTGMRHF 509 (511)
T ss_pred EEEeccccCCCccHHHHHHcCCEEE--------EcCC--C-CCCc------HHHHHHHHHhCCEEEECCCCCC
Confidence 4578999999999999999999986 7885 5 5543 67899999999998776 3344
No 228
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=26.74 E-value=2.4e+02 Score=26.98 Aligned_cols=126 Identities=10% Similarity=0.028 Sum_probs=69.5
Q ss_pred cHHHHHHHHHcCCCccccccC-c-CccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCC
Q 023097 79 YKEDIDLIAKLGFDAYRFSIS-W-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLN 156 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~-W-~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~ 156 (287)
-.+.++.|+++|++.+-+++. - .++...- | +.. ..+-..+.++.+++.++.+.++|- +++|. .+
T Consensus 103 ~~e~L~~l~~~GvnrislGvQS~~d~vL~~l-~-R~~--~~~~~~~ai~~~~~~~~~v~~dli-~GlPg---------qt 168 (380)
T PRK09057 103 EAGRFRGYRAAGVNRVSLGVQALNDADLRFL-G-RLH--SVAEALAAIDLAREIFPRVSFDLI-YARPG---------QT 168 (380)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-C-CCC--CHHHHHHHHHHHHHhCccEEEEee-cCCCC---------CC
Confidence 448999999999997666653 1 1222221 3 221 134556778888888998988886 56662 11
Q ss_pred hHHHHHHHHHHHHHHHHhCCCccEEEEecCCccccccCccccccC-CCCCCCCCchhHHHHHHHHHHH
Q 023097 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFA-PGRHQHSSTEPYLVAHHQILAH 223 (287)
Q Consensus 157 ~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~~~~~~gy~~g~~~-p~~~~~~~~~~~~~~hn~l~AH 223 (287)
.+.+.+=.+.+.+.=-++|..+...=||+...+.-+..|.+. |.. ....++++.+..++.++
T Consensus 169 ---~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~--~~~~~~~~~~~~~L~~~ 231 (380)
T PRK09057 169 ---LAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKLILPDE--DLAADLYELTQEITAAA 231 (380)
T ss_pred ---HHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCCCCCCh--HHHHHHHHHHHHHHHHc
Confidence 223333344444322356888888888875433223333332 211 11124455555555443
No 229
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=26.63 E-value=3.5e+02 Score=24.31 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=47.9
Q ss_pred CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCccEEEEecCC
Q 023097 108 LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEP 187 (287)
Q Consensus 108 ~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP 187 (287)
+| .+| ++-+++.++.|.+.|+.-++.+-+- |-...-+.++..+.++.+.+.-+++++...-...+
T Consensus 12 dg-~iD---~~~~~~~i~~l~~~Gv~gi~~~Gst-----------GE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~ 76 (281)
T cd00408 12 DG-EVD---LDALRRLVEFLIEAGVDGLVVLGTT-----------GEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGAN 76 (281)
T ss_pred CC-CcC---HHHHHHHHHHHHHcCCCEEEECCCC-----------cccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCc
Confidence 47 899 5668999999999999998876541 11111235667777888888878888877766666
Q ss_pred cc
Q 023097 188 LQ 189 (287)
Q Consensus 188 ~~ 189 (287)
+.
T Consensus 77 ~~ 78 (281)
T cd00408 77 ST 78 (281)
T ss_pred cH
Confidence 54
No 230
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=26.51 E-value=2.3e+02 Score=29.20 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=31.3
Q ss_pred cccCcHH-----HHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 75 HYHRYKE-----DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 75 ~~~~~~e-----Di~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
.|..|.+ .++++++.|++.+|..-+ +|+ ++-....|+.+++.|.....+++
T Consensus 89 Gy~~~~d~vv~~~v~~a~~~Gidv~Rifd~------------lnd--~~n~~~~i~~~k~~G~~~~~~i~ 144 (596)
T PRK14042 89 GYRNYADDVVRAFVKLAVNNGVDVFRVFDA------------LND--ARNLKVAIDAIKSHKKHAQGAIC 144 (596)
T ss_pred ccccCChHHHHHHHHHHHHcCCCEEEEccc------------Ccc--hHHHHHHHHHHHHcCCEEEEEEE
Confidence 4666665 578899999999996522 121 23334455556666665555543
No 231
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=26.42 E-value=72 Score=29.50 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHH
Q 023097 114 MEGITFYNNIIDALLQKGIQPYVTLYHWDLPLH 146 (287)
Q Consensus 114 ~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~w 146 (287)
.+|++-+.++|+.+++.|+.+|+++=..|+|.-
T Consensus 69 ~~G~~~l~~~i~~l~~~g~~VilD~K~~DI~nT 101 (278)
T PRK00125 69 AEGLAQLERTIAYLREAGVLVIADAKRGDIGST 101 (278)
T ss_pred chhhhHHHHHHHHHHHCCCcEEEEeecCChHHH
Confidence 346888999999999999999999999998843
No 232
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=26.15 E-value=1.2e+02 Score=29.18 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHH
Q 023097 118 TFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYAD 168 (287)
Q Consensus 118 ~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~ 168 (287)
+....+++.++++|+-.=+..+|-.++.-+.++| |-.....++.-.++++
T Consensus 118 ~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky-~~t~~amvesA~~~~~ 167 (359)
T PF04551_consen 118 EKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKY-GPTPEAMVESALEHVR 167 (359)
T ss_dssp HHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHH-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEecccccCcHHHHhhc-cchHHHHHHHHHHHHH
Confidence 6789999999999999999999999999998887 3233334444444554
No 233
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.11 E-value=4e+02 Score=23.76 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=35.4
Q ss_pred CcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEE
Q 023097 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV 136 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~v 136 (287)
.+++-+++++++|++.+=+++.=....+.. . .++. ...+.+-+.++++||++..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~-~-~~~~---~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERLAR-L-DWSR---EQRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccchhc-c-CCCH---HHHHHHHHHHHHcCCceeE
Confidence 477899999999999987754211111111 1 1232 4577788889999999753
No 234
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=25.88 E-value=3.1e+02 Score=24.80 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=47.4
Q ss_pred CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCccEEEEecCC
Q 023097 108 LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEP 187 (287)
Q Consensus 108 ~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP 187 (287)
+| .+|. +-+++.++.+.+.|+..++.+-+- |-...-+.+...+..+.+.+.-++++....-...+
T Consensus 15 dg-~iD~---~~~~~~i~~l~~~Gv~gl~v~Gst-----------GE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~ 79 (284)
T cd00950 15 DG-SVDF---DALERLIEFQIENGTDGLVVCGTT-----------GESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSN 79 (284)
T ss_pred CC-CcCH---HHHHHHHHHHHHcCCCEEEECCCC-----------cchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCc
Confidence 47 8995 568899999999999999877432 11122346677777888888888888877766655
Q ss_pred c
Q 023097 188 L 188 (287)
Q Consensus 188 ~ 188 (287)
+
T Consensus 80 ~ 80 (284)
T cd00950 80 N 80 (284)
T ss_pred c
Confidence 4
No 235
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=25.61 E-value=1.1e+02 Score=30.88 Aligned_cols=50 Identities=30% Similarity=0.494 Sum_probs=41.4
Q ss_pred cccccccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEE
Q 023097 71 VAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (287)
Q Consensus 71 ~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vt 137 (287)
.++|.+..+.+-++.|++.|++++ ++|. | .++. +++|+.+.++||..+.|
T Consensus 457 ~aSDafFPf~Dtie~aa~~Gv~aI--------iqPg--G-SirD------~evI~aAne~gIamvfT 506 (513)
T PRK00881 457 LASDAFFPFRDGVEAAAKAGITAI--------IQPG--G-SIRD------EEVIAAADEHGIAMVFT 506 (513)
T ss_pred EEeeCCCCchhHHHHHHHcCCeEE--------EeCC--C-CCCh------HHHHHHHHHcCCEEEEC
Confidence 457888888999999999999985 6775 5 5764 68999999999998887
No 236
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.58 E-value=82 Score=28.31 Aligned_cols=58 Identities=12% Similarity=0.070 Sum_probs=37.7
Q ss_pred ccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChh----HHHHHHHHHHHHHHCCCeeEEEec
Q 023097 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINME----GITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~----~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
..+++.-+++.+++|.+.+++.-. -.+. + .-+.+ ..+..+.+.+.++++||.+.+=.+
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~~~---~~~~--~-~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLAGY---DVYY--E-QANNETRRRFIDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCc---cccc--c-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeec
Confidence 345667789999999999997511 1111 1 11222 256668888888999987777543
No 237
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=25.46 E-value=75 Score=30.52 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
++=|++|++.|++.+=.|+ ..|+. . ..+.++.+.++++.|++.||++++++.
T Consensus 17 ~~yi~~a~~~Gf~~iFTSL----~ipe~-~---~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 17 KAYIEKAAKYGFKRIFTSL----HIPED-D---PEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp HHHHHHHHCTTEEEEEEEE-----------------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred HHHHHHHHHCCCCEEECCC----CcCCC-C---HHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 3447888999988776665 35553 2 234578999999999999999999985
No 238
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=25.33 E-value=2.5e+02 Score=27.03 Aligned_cols=52 Identities=17% Similarity=0.100 Sum_probs=38.0
Q ss_pred ccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCcc
Q 023097 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVK 179 (287)
Q Consensus 111 ~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~ 179 (287)
-|++.-++..+.++..++++||++++.- |..|+. ..++-++.++++.|-.++
T Consensus 51 gY~~~~~~~L~~~L~~~~~~gIkvI~Na--------------Gg~np~---~~a~~v~eia~e~Gl~lk 102 (362)
T PF07287_consen 51 GYAPDFVRDLRPLLPAAAEKGIKVITNA--------------GGLNPA---GCADIVREIARELGLSLK 102 (362)
T ss_pred CchHHHHHHHHHHHHHHHhCCCCEEEeC--------------CCCCHH---HHHHHHHHHHHhcCCCee
Confidence 4788888999999999999999998873 334443 366667777777665433
No 239
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=25.06 E-value=67 Score=25.06 Aligned_cols=60 Identities=22% Similarity=0.369 Sum_probs=40.7
Q ss_pred cccccCcHHHHHHHHH-cCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEe
Q 023097 73 VDHYHRYKEDIDLIAK-LGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 73 ~d~~~~~~eDi~l~~~-lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
-++|+-|.+|...+++ +|++..........-.|.- | +. ...++..+..|.++|.++.+.=
T Consensus 24 G~fYe~y~~DA~~~a~~l~~~~~~~~~~~~~~~~~~-g--fp---~~~l~~~l~~Ll~~G~~V~i~~ 84 (113)
T PF01624_consen 24 GDFYEAYGEDAEFVAEILGLKLSKRKTGGGKSVPMA-G--FP---KSQLDKYLKKLLEAGYRVAIYE 84 (113)
T ss_dssp TTEEEEECHHHHHHHHHHTSSSEEEECSSSECEEEE-E--EE---GGGHHHHHHHHHHTT-EEEEEE
T ss_pred CCEEEEEccCHHHHHHhccceeeeccccccccccEe-c--cc---HHHHHHHHHHHHHcCCEEEEEE
Confidence 4699999999886655 8888765553333223433 4 44 2557888899999999998863
No 240
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=24.99 E-value=6.1e+02 Score=24.19 Aligned_cols=130 Identities=16% Similarity=0.131 Sum_probs=75.0
Q ss_pred CCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCC-------------cHHhHhhc--CCCC-----C----hHHHHHHH
Q 023097 109 GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL-------------PLHLHESM--GGWL-----N----KEIVKYFE 164 (287)
Q Consensus 109 g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~-------------P~wl~~~~--ggw~-----~----~~~~~~f~ 164 (287)
| -++++-+.-++++++.++++|-+.++=|+|-+- |.-+.... .... + .++++.|+
T Consensus 75 ~-l~~d~~i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~ 153 (370)
T cd02929 75 R-LWDDGDIRNLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYV 153 (370)
T ss_pred C-cCCHHHHHHHHHHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHH
Confidence 6 678889999999999999999999999999542 00000000 0000 1 14677777
Q ss_pred HHHHHHHHHhC-CCccEEEEecCCccccccCcccccc-CCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCce
Q 023097 165 IYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIF-APGR-HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGN 241 (287)
Q Consensus 165 ~ya~~v~~~~~-d~V~~w~t~NEP~~~~~~gy~~g~~-~p~~-~~~~~~~~~~~~hn~l~AHa~a~~~~r~~~~~~~~~k 241 (287)
+=|+.+.+ -| |-|. +.+-.||+...| .|.. +..+ +.--.+-|-+.--..+++.+|+... ++..
T Consensus 154 ~AA~ra~~-aGfDgVE---------ih~ahGyLl~QFlSp~~N~RtD--~yGGslenR~Rf~~eii~aIr~~vg--~~~~ 219 (370)
T cd02929 154 DAALRARD-AGFDIVY---------VYAAHGYLPLQFLLPRYNKRTD--EYGGSLENRARFWRETLEDTKDAVG--DDCA 219 (370)
T ss_pred HHHHHHHH-cCCCEEE---------EcccccchHHHhhCccccCCcc--ccCCChHhhhHHHHHHHHHHHHHcC--CCce
Confidence 75555544 33 2232 234457776544 3331 1111 1111244555555677888887642 4567
Q ss_pred EEeeecCceeee
Q 023097 242 IGLVVDCEWAEA 253 (287)
Q Consensus 242 IG~~~~~~~~~P 253 (287)
||+-++.....|
T Consensus 220 v~vRls~~~~~~ 231 (370)
T cd02929 220 VATRFSVDELIG 231 (370)
T ss_pred EEEEecHHHhcC
Confidence 888887655544
No 241
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=24.94 E-value=1e+02 Score=31.02 Aligned_cols=68 Identities=19% Similarity=0.340 Sum_probs=41.3
Q ss_pred HHHHHHHHHC--CCeeEEEeccCCCcHHhHhh--c--CCCCC----hHHHHHHHHHHHHHHHHhCCC---ccEEEEecCC
Q 023097 121 NNIIDALLQK--GIQPYVTLYHWDLPLHLHES--M--GGWLN----KEIVKYFEIYADTCFASFGDR---VKNWITINEP 187 (287)
Q Consensus 121 ~~~i~~l~~~--GI~p~vtL~h~~~P~wl~~~--~--ggw~~----~~~~~~f~~ya~~v~~~~~d~---V~~w~t~NEP 187 (287)
-.+|.++++. +|+.+.+- |..|.|+-.. + +|.+. ++..+.|++|--+.++.|+.. |-.-.+-|||
T Consensus 156 ip~ik~a~~~~~~lki~aSp--WSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP 233 (496)
T PF02055_consen 156 IPLIKEALAINPNLKIFASP--WSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEP 233 (496)
T ss_dssp HHHHHHHHHHHTT-EEEEEE--S---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSC
T ss_pred HHHHHHHHHhCCCcEEEEec--CCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCC
Confidence 3566666653 47777776 8999998542 1 24443 355677777777777778664 4445689999
Q ss_pred ccc
Q 023097 188 LQT 190 (287)
Q Consensus 188 ~~~ 190 (287)
...
T Consensus 234 ~~~ 236 (496)
T PF02055_consen 234 DNG 236 (496)
T ss_dssp CGG
T ss_pred CCC
Confidence 864
No 242
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=24.94 E-value=90 Score=24.53 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCCccccccC-cCcc-ccCCCCCcc-ChhHHHHHHHHHHHHHHCCCeeE
Q 023097 80 KEDIDLIAKLGFDAYRFSIS-WSRI-FPDGLGTKI-NMEGITFYNNIIDALLQKGIQPY 135 (287)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~-W~ri-~P~~~g~~~-n~~~~~~y~~~i~~l~~~GI~p~ 135 (287)
++.++.+++.|++.+++|++ -+.- ... .+ ....++...+.++.|+++|+.++
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~----~~~~~~~~~~~~~~l~~l~~~g~~~~ 144 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLR----IINRGKSFERVLEALERLKEAGIPRV 144 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHH----HHSSTSHHHHHHHHHHHHHHTTSETE
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhh----hhcCCCCHHHHHHHHHHHHHcCCCcE
Confidence 89999999999999999984 2221 111 11 11246778899999999999963
No 243
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=24.88 E-value=1.2e+02 Score=28.46 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=35.4
Q ss_pred cHHHHHHHHHcCCCccccc----cCc---CccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEe
Q 023097 79 YKEDIDLIAKLGFDAYRFS----ISW---SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~s----i~W---~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
.++.++.|+++|++.+-.. ++. .++.|. ..+ .+-+.+.++.+++.||++..++
T Consensus 142 ~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~----~~s---~~~~l~~i~~a~~~Gi~v~~~~ 201 (340)
T TIGR03699 142 LREVLERLKEAGLDSIPGGGAEILSDRVRKIISPK----KIS---SEEWLEVMETAHKLGLPTTATM 201 (340)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCC----CCC---HHHHHHHHHHHHHcCCCcccee
Confidence 3789999999999977421 111 112222 122 4567899999999999876554
No 244
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=24.85 E-value=1.8e+02 Score=23.47 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=39.3
Q ss_pred cHHHHHHHHHcCCCccccccCcCccccCCCCCcc--ChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKI--NMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~--n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
-+++++.|+++|+..+.+|++-..-.-.. .+ ....++.+-+.|+.+++.|+.+.+++.
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 146 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVAD---KIRGSGESFKERLEALKELREAGLGLSTTLL 146 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHH---HHhcCCcCHHHHHHHHHHHHHcCCCceEEEE
Confidence 47899999999999999998632211100 00 111256788888888988888777653
No 245
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=24.74 E-value=1.1e+02 Score=28.21 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=26.9
Q ss_pred ccChhHHHHHHHHHHHHHHCCCeeEEEecc
Q 023097 111 KINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (287)
Q Consensus 111 ~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h 140 (287)
.+|+.+-....++|.++++.|+.++++.|+
T Consensus 168 gLD~~~~~~l~~~l~~l~~~g~till~sH~ 197 (306)
T PRK13537 168 GLDPQARHLMWERLRSLLARGKTILLTTHF 197 (306)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 489999999999999999899999998875
No 246
>PRK10426 alpha-glucosidase; Provisional
Probab=24.55 E-value=2.8e+02 Score=28.74 Aligned_cols=104 Identities=19% Similarity=0.238 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCCc--cccccCcCccccCCCC------CccChhHHHHHHHHHHHHHHCCCeeEEEeccC---CCcHHhHh
Q 023097 81 EDIDLIAKLGFDA--YRFSISWSRIFPDGLG------TKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLHE 149 (287)
Q Consensus 81 eDi~l~~~lG~~~--~R~si~W~ri~P~~~g------~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~---~~P~wl~~ 149 (287)
+-++.+++.|+.+ +=+. .|........| ..+|.+-+--.+++|++|++.|+++++.+.=+ +.|..-..
T Consensus 225 ~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e~ 303 (635)
T PRK10426 225 KKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCEEA 303 (635)
T ss_pred HHHHHHHHcCCCeeEEEEe-cccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHHHH
Confidence 4467778888653 3233 57644221111 13355444556899999999999988887632 22333211
Q ss_pred h-------------c--------C---CCCChHHHHHHHHHHHHHHHHhCCCccE-EEEecCC
Q 023097 150 S-------------M--------G---GWLNKEIVKYFEIYADTCFASFGDRVKN-WITINEP 187 (287)
Q Consensus 150 ~-------------~--------g---gw~~~~~~~~f~~ya~~v~~~~~d~V~~-w~t~NEP 187 (287)
. | + .+.||+..+.|.+..+......| |+. |.=+||+
T Consensus 304 ~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 304 AEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 1 0 1 16788999988877665555554 665 5788994
No 247
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=24.46 E-value=2.2e+02 Score=29.25 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHH
Q 023097 118 TFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCF 171 (287)
Q Consensus 118 ~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~ 171 (287)
+.+..+++.|+++|+..=+..+|..++.-+..+||. .....++.-.+|++.|-
T Consensus 145 e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~yG~-tpegmVeSAle~~~i~e 197 (606)
T PRK00694 145 EKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRYGD-TIEGMVYSALEYIEVCE 197 (606)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999998863 33345555555555543
No 248
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=24.33 E-value=3.3e+02 Score=26.63 Aligned_cols=125 Identities=14% Similarity=0.185 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCCCccccccCcCccccCC---CCCccChhHHHHHHHHHHHHHHCCCee-EEEeccCCCcHHhHhhcCCCC
Q 023097 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQP-YVTLYHWDLPLHLHESMGGWL 155 (287)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~---~g~~~n~~~~~~y~~~i~~l~~~GI~p-~vtL~h~~~P~wl~~~~ggw~ 155 (287)
.+-++.++++|+| |+|+-=.-+-++- -| +... -+--...++.+++.|+.- -++|- |++|.
T Consensus 137 ~e~~~~l~~~GvN--RiSlGVQsf~~~~lk~lg-R~h~--~~~~~~a~~~~~~~g~~~in~DLI-yglP~---------- 200 (416)
T COG0635 137 AEKFKALKEAGVN--RISLGVQSFNDEVLKALG-RIHD--EEEAKEAVELARKAGFTSINIDLI-YGLPG---------- 200 (416)
T ss_pred HHHHHHHHHcCCC--EEEeccccCCHHHHHHhc-CCCC--HHHHHHHHHHHHHcCCCcEEEEee-cCCCC----------
Confidence 4668999999999 8887522222221 03 3321 244567888899988874 45555 45551
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCccEEEEecCCccccccCccccccCCCCCCCCCchhHHHHHHHHHHHH
Q 023097 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHA 224 (287)
Q Consensus 156 ~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~AHa 224 (287)
++.+.|.+=.+.+++-=-++|..+...-||+.....-...|...|... ...+.++..+..+..+.
T Consensus 201 --QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d--~~~~~~~~~~e~L~~~G 265 (416)
T COG0635 201 --QTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDED--EKADMYELVEELLEKAG 265 (416)
T ss_pred --CCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCCCCcChH--HHHHHHHHHHHHHHHCC
Confidence 234445555566666556899999999999987655455454334321 12345666666665544
No 249
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=24.28 E-value=1.5e+02 Score=24.94 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=26.1
Q ss_pred ccChhHHHHHHHHHHHHHHCCCeeEEEeccC
Q 023097 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHW 141 (287)
Q Consensus 111 ~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~ 141 (287)
.+|....+...++|..+++.|..++++.|..
T Consensus 157 ~LD~~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 157 GLDPAGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 5888888999999999988898888877653
No 250
>PRK09389 (R)-citramalate synthase; Provisional
Probab=24.27 E-value=1.1e+02 Score=30.69 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=49.0
Q ss_pred CcHHHHHHHHHcCCCccccccCcCccccCC-CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccC
Q 023097 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW 141 (287)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~ 141 (287)
.-++|++.+.+.|++.+++.++-|.+.-+. -+ .--++.++...+.++.+++.|+++.+++-..
T Consensus 74 ~~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~-~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~ 137 (488)
T PRK09389 74 AVKVDIDAALECDVDSVHLVVPTSDLHIEYKLK-KTREEVLETAVEAVEYAKDHGLIVELSGEDA 137 (488)
T ss_pred cCHHHHHHHHhCCcCEEEEEEccCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCEEEEEEeeC
Confidence 348999999999999999999877664332 13 2234678889999999999999998887643
No 251
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=24.26 E-value=2.2e+02 Score=29.34 Aligned_cols=52 Identities=10% Similarity=0.147 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHH
Q 023097 118 TFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTC 170 (287)
Q Consensus 118 ~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v 170 (287)
+....+++.|+++|+..=+..+|..++.-+..+||. +....++--.+|++.|
T Consensus 141 e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~yg~-tpe~mVeSAle~~~i~ 192 (611)
T PRK02048 141 DRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRYGD-TPEGMVESCMEFLRIC 192 (611)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 567789999999999999999999999999988863 3333455555555544
No 252
>PF13119 DUF3973: Domain of unknown function (DUF3973)
Probab=24.13 E-value=34 Score=22.15 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=18.3
Q ss_pred HHHHHHHhhhccccchhhhhccccc
Q 023097 262 SAAARRLDFQIGWYCLKYSVNVISL 286 (287)
Q Consensus 262 ~Aa~~~~~~~n~~flDp~~~~~~~~ 286 (287)
+.......|.|+.++||+..+-+.|
T Consensus 13 e~~~~~~iF~ngfYIdPflgek~hL 37 (41)
T PF13119_consen 13 EKGINDKIFKNGFYIDPFLGEKYHL 37 (41)
T ss_pred hhcchhhhhhCceeecccccceeec
Confidence 3333445678999999999887765
No 253
>PF06777 DUF1227: Protein of unknown function (DUF1227); InterPro: IPR010643 This domain represents a conserved region within a number of eukaryotic DNA repair helicases.; GO: 0005634 nucleus
Probab=23.93 E-value=1.5e+02 Score=24.76 Aligned_cols=68 Identities=16% Similarity=0.118 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHCCCeeE--EEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCccEEEEecC
Q 023097 118 TFYNNIIDALLQKGIQPY--VTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINE 186 (287)
Q Consensus 118 ~~y~~~i~~l~~~GI~p~--vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NE 186 (287)
+=|+++++.|+..++..- ..+.+--+|..+...- =-.|--..+.|..|-+++++.++.+++--.+..|
T Consensus 16 ~EY~rLV~GL~~~~~~~~~d~~~~npvLp~dil~ea-VPGnIR~AeHFv~flkR~veylk~rlrv~~v~~e 85 (146)
T PF06777_consen 16 DEYDRLVEGLREAEIARETDEILANPVLPDDILKEA-VPGNIRRAEHFVAFLKRFVEYLKTRLRVQHVISE 85 (146)
T ss_pred HHHHHHHHHHHHhccccccchhhcCCCCchhhhhhc-CCchHHhHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 459999999999986432 2234445676655431 0112234789999999999999988877777777
No 254
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=23.91 E-value=3.8e+02 Score=26.09 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcC-C-CCChHHHHHHHHHHHHHH--------HHhCCCccEE-EEec
Q 023097 117 ITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMG-G-WLNKEIVKYFEIYADTCF--------ASFGDRVKNW-ITIN 185 (287)
Q Consensus 117 ~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~g-g-w~~~~~~~~f~~ya~~v~--------~~~~d~V~~w-~t~N 185 (287)
-+++.+.+.+++++|+.... |.--.-|.|.-. |. - |+..+....+.+|+.-+. +++++.+..- .++|
T Consensus 152 A~~l~~fv~~m~~nGvnlya-lSVQNEPd~~p~-~d~~~wtpQe~~rF~~qyl~si~~~~rV~~pes~~~~~~~~dp~ln 229 (433)
T COG5520 152 ADYLNDFVLEMKNNGVNLYA-LSVQNEPDYAPT-YDWCWWTPQEELRFMRQYLASINAEMRVIIPESFKDLPNMSDPILN 229 (433)
T ss_pred HHHHHHHHHHHHhCCCceeE-EeeccCCcccCC-CCcccccHHHHHHHHHHhhhhhccccEEecchhccccccccccccc
Confidence 46778888999999987654 443456777632 33 3 444455666667776666 3555533321 2677
Q ss_pred CCcccccc
Q 023097 186 EPLQTAVN 193 (287)
Q Consensus 186 EP~~~~~~ 193 (287)
.|-.....
T Consensus 230 Dp~a~a~~ 237 (433)
T COG5520 230 DPKALANM 237 (433)
T ss_pred CHhHhccc
Confidence 77655443
No 255
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=23.86 E-value=1.8e+02 Score=26.30 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=37.2
Q ss_pred HHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 84 DLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 84 ~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
++++++|++.+=++-|=.|-.= | +=| +...+-+..++++||+|++++-
T Consensus 78 ~mL~d~G~~~viiGHSERR~~f---~-Et~----~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 78 EMLKDAGAKYVIIGHSERRQYF---G-ETD----EDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHcCCCEEEeCcccccCcC---C-CCc----HHHHHHHHHHHHCCCEEEEEeC
Confidence 7899999999988877444321 2 222 6678889999999999999984
No 256
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=23.37 E-value=1.2e+02 Score=28.70 Aligned_cols=57 Identities=23% Similarity=0.426 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCCccccccCcCccccCCCCCccCh--hHHHH-HHHHHHHHHHCCCeeEEEeccCC
Q 023097 81 EDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINM--EGITF-YNNIIDALLQKGIQPYVTLYHWD 142 (287)
Q Consensus 81 eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~--~~~~~-y~~~i~~l~~~GI~p~vtL~h~~ 142 (287)
.++.++.++|+++ +++-|+|=-.-++| -+.+ .||.. =.++|++|.+.|| +++|.|-.
T Consensus 112 ~~L~~~~~~GvR~--lgltwn~~N~~g~g-~~~~~~~GLs~~Gk~lV~~~N~LgI--iiDlSH~s 171 (313)
T COG2355 112 DKLELFHALGVRS--LGLTWNRDNLFGDG-CYERTGGGLTPFGKELVREMNELGI--IIDLSHLS 171 (313)
T ss_pred HHHHHHHHhCceE--EEeeeccCCcccCc-cCCCCCCCCCHHHHHHHHHHHhcCC--EEEecccC
Confidence 4567789999877 56788876544433 3222 23332 2678899988885 77888854
No 257
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=23.30 E-value=3.7e+02 Score=24.45 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=45.0
Q ss_pred CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCccEEEEecCC
Q 023097 108 LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEP 187 (287)
Q Consensus 108 ~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP 187 (287)
+| .+| ++-+++.++.+.+.|+.-++.+-+- |-...-+.+...+..+.+.+.-+++++...-....
T Consensus 16 dg-~iD---~~~l~~~i~~l~~~Gv~gi~~~Gs~-----------GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~ 80 (292)
T PRK03170 16 DG-SVD---FAALRKLVDYLIANGTDGLVVVGTT-----------GESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSN 80 (292)
T ss_pred CC-CcC---HHHHHHHHHHHHHcCCCEEEECCcC-----------CccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCc
Confidence 47 899 4668999999999999999876431 11112235566666777777777788777655554
Q ss_pred c
Q 023097 188 L 188 (287)
Q Consensus 188 ~ 188 (287)
+
T Consensus 81 ~ 81 (292)
T PRK03170 81 S 81 (292)
T ss_pred h
Confidence 4
No 258
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=23.05 E-value=2e+02 Score=29.36 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHCCCeeEEEeccCCC
Q 023097 114 MEGITFYNNIIDALLQKGIQPYVTLYHWDL 143 (287)
Q Consensus 114 ~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~ 143 (287)
.+|+.-+.+.|+-+++.|+.++|.+++|+.
T Consensus 355 ~sGl~NL~RHIenvr~FGvPvVVAINKFd~ 384 (557)
T PRK13505 355 KKGFANLERHIENIRKFGVPVVVAINKFVT 384 (557)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 357889999999999999999999999985
No 259
>PRK08508 biotin synthase; Provisional
Probab=22.76 E-value=1.9e+02 Score=26.42 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=39.2
Q ss_pred cHHHHHHHHHcCCCccccccCc-CccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEe
Q 023097 79 YKEDIDLIAKLGFDAYRFSISW-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W-~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
.+|.++.|++.|++.+-.+++= ++++|.-.. .-+ ++..-+.++.+++.||++--++
T Consensus 101 ~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~-~~~---~~~~l~~i~~a~~~Gi~v~sg~ 157 (279)
T PRK08508 101 SVEQLKELKKAGIFSYNHNLETSKEFFPKICT-THT---WEERFQTCENAKEAGLGLCSGG 157 (279)
T ss_pred CHHHHHHHHHcCCCEEcccccchHHHhcCCCC-CCC---HHHHHHHHHHHHHcCCeeccee
Confidence 5899999999999999887632 346665411 122 4556667788999999765544
No 260
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=22.41 E-value=3.7e+02 Score=24.83 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=34.4
Q ss_pred cHHHHHHHHHcCCCccccccC-cCc-cccCCCCCccChhHHHHHHHHHHHHHHCCC-eeEE
Q 023097 79 YKEDIDLIAKLGFDAYRFSIS-WSR-IFPDGLGTKINMEGITFYNNIIDALLQKGI-QPYV 136 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~-W~r-i~P~~~g~~~n~~~~~~y~~~i~~l~~~GI-~p~v 136 (287)
..+.++.+++.|++.+.+|++ ... ..-.-.+ .. .++...+.|+.+++.|+ .+.+
T Consensus 107 l~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~-~~---~~~~vl~~i~~~~~~g~~~v~i 163 (331)
T PRK00164 107 LARRAAALKDAGLDRVNVSLDSLDPERFKAITG-RD---RLDQVLAGIDAALAAGLTPVKV 163 (331)
T ss_pred HHHHHHHHHHcCCCEEEEEeccCCHHHhccCCC-CC---CHHHHHHHHHHHHHCCCCcEEE
Confidence 456788999999998888873 221 0100012 21 26677888889999998 4443
No 261
>PLN02891 IMP cyclohydrolase
Probab=22.37 E-value=1e+02 Score=31.30 Aligned_cols=54 Identities=19% Similarity=0.390 Sum_probs=42.1
Q ss_pred cccccccCcH--HHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEE-eccC
Q 023097 71 VAVDHYHRYK--EDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT-LYHW 141 (287)
Q Consensus 71 ~a~d~~~~~~--eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vt-L~h~ 141 (287)
.|+|-+..++ +-++.+++.|+.++ |+|- | .+.. +++|+.+.++||.-+.| .-||
T Consensus 489 lASDAFFPF~~~D~ve~aa~~Gv~aI--------IQPG--G-SiRD------~evI~aane~giaMvfTg~RhF 545 (547)
T PLN02891 489 LASDAFFPFAWNDAVEEACQAGVKVI--------AEPG--G-SMRD------QDAIDCCNKYGVALLFTGVRHF 545 (547)
T ss_pred EEecccCCCCCCccHHHHHHhCCEEE--------ECCC--C-CCCc------HHHHHHHHHhCCEEEECCCCCC
Confidence 4678776665 88999999999986 7885 5 5653 67899999999988776 3344
No 262
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=22.27 E-value=2.8e+02 Score=25.78 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHCCCe--eEEE---------------eccCCCcHHhHhhcCCCCCh-H-HHHHHHHHHHHHHHHhCCC
Q 023097 117 ITFYNNIIDALLQKGIQ--PYVT---------------LYHWDLPLHLHESMGGWLNK-E-IVKYFEIYADTCFASFGDR 177 (287)
Q Consensus 117 ~~~y~~~i~~l~~~GI~--p~vt---------------L~h~~~P~wl~~~~ggw~~~-~-~~~~f~~ya~~v~~~~~d~ 177 (287)
.+.|.++++.|++.||+ +++. +++-.+|.|+.++....... + ..+.=.+||....+.+.+.
T Consensus 188 ~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~ 267 (296)
T PRK09432 188 VESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKLVGASIAMDMVKILSRE 267 (296)
T ss_pred hHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 46678999999999854 3333 34677899998876555332 2 2223344555555554332
Q ss_pred -cc--EEEEecCCccc
Q 023097 178 -VK--NWITINEPLQT 190 (287)
Q Consensus 178 -V~--~w~t~NEP~~~ 190 (287)
|+ +..|+|-+...
T Consensus 268 gv~GvH~yt~n~~~~~ 283 (296)
T PRK09432 268 GVKDFHFYTLNRAELT 283 (296)
T ss_pred CCCEEEEecCCChHHH
Confidence 32 34468877654
No 263
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=22.24 E-value=1.8e+02 Score=25.56 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=35.2
Q ss_pred HHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEe
Q 023097 84 DLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 84 ~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
.+++++|++.+=++-|=.| +.+ =| ..+-+..++++||+|+++.
T Consensus 75 ~mLkd~G~~~viiGHSERR-f~E-----td------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 75 EMLKDIGAKGTLINHSERR-MKL-----AD------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHcCCCEEEECcccCC-CCc-----cH------HHHHHHHHHHCCCEEEEEE
Confidence 7899999999988888667 222 12 5778889999999999998
No 264
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=22.21 E-value=5.1e+02 Score=23.41 Aligned_cols=66 Identities=17% Similarity=0.123 Sum_probs=47.6
Q ss_pred CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCccEEEEecCC
Q 023097 108 LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEP 187 (287)
Q Consensus 108 ~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP 187 (287)
+| .+| ++-+++.++.+.+.|+.-++.+-+- |=...-+.+...+..+.+.+.-+++++...-....
T Consensus 16 dg-~id---~~~~~~~i~~l~~~Gv~gl~~~Gst-----------GE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~ 80 (289)
T PF00701_consen 16 DG-SID---EDALKRLIDFLIEAGVDGLVVLGST-----------GEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGAN 80 (289)
T ss_dssp TS-SB----HHHHHHHHHHHHHTTSSEEEESSTT-----------TTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESS
T ss_pred Cc-CcC---HHHHHHHHHHHHHcCCCEEEECCCC-----------cccccCCHHHHHHHHHHHHHHccCceEEEecCcch
Confidence 37 899 5678999999999999998877531 11112235677788888889899999887766665
Q ss_pred c
Q 023097 188 L 188 (287)
Q Consensus 188 ~ 188 (287)
+
T Consensus 81 s 81 (289)
T PF00701_consen 81 S 81 (289)
T ss_dssp S
T ss_pred h
Confidence 5
No 265
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=21.96 E-value=1.3e+02 Score=23.51 Aligned_cols=47 Identities=19% Similarity=0.391 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEE
Q 023097 81 EDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (287)
Q Consensus 81 eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vt 137 (287)
+=...+++. ...|++++ +-+ ++|-.|++..-++++.++++|..+.++
T Consensus 31 ~r~~~~~~~--~~~~idLs-------~v~-rvDSaglALL~~~~~~~k~~g~~~~L~ 77 (99)
T COG3113 31 QREAQLKQL--DTVRIDLS-------GVS-RVDSAGLALLLHLIRLAKKQGNAVTLT 77 (99)
T ss_pred HHHHHcccc--CeEEEehh-------hcc-eechHHHHHHHHHHHHHHHcCCeeEEe
Confidence 333444444 56666554 225 889999999999999999999966665
No 266
>PRK08445 hypothetical protein; Provisional
Probab=21.83 E-value=5.4e+02 Score=24.39 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=39.1
Q ss_pred cHHHHHHHHHcCCCccc-cccC-----c-CccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 79 YKEDIDLIAKLGFDAYR-FSIS-----W-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 79 ~~eDi~l~~~lG~~~~R-~si~-----W-~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
.+|.++.++++|++.+= .+++ = .++.|.+ .. .+-+.+.++.+++.||+...+.-
T Consensus 143 ~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~----~t---~~~~i~~i~~a~~~Gi~~~sg~i 203 (348)
T PRK08445 143 IKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKK----LD---SDRWLEVHRQAHLIGMKSTATMM 203 (348)
T ss_pred HHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCC----CC---HHHHHHHHHHHHHcCCeeeeEEE
Confidence 47999999999999774 4443 1 2333543 23 23457999999999999999864
No 267
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=21.75 E-value=1.7e+02 Score=30.53 Aligned_cols=56 Identities=7% Similarity=0.002 Sum_probs=37.3
Q ss_pred HHHHHHcCCCcccccc---C---cC-ccccCCCCCccCh-------h--HHHHHHHHHHHHHHCCCeeEEEec
Q 023097 83 IDLIAKLGFDAYRFSI---S---WS-RIFPDGLGTKINM-------E--GITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 83 i~l~~~lG~~~~R~si---~---W~-ri~P~~~g~~~n~-------~--~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
-+.++++|++.+=++= | |. +.-|..+| .+|- . ..+=++++++++.++||+++++|.
T Consensus 80 wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~-gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 80 WKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDG-NFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred HHHHHHhCCCEEEeCcceecccccccCCCCCCCC-CCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 5778899999877662 1 11 11133233 3331 1 256689999999999999999974
No 268
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=21.63 E-value=2.4e+02 Score=25.78 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=30.2
Q ss_pred cCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHH
Q 023097 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDAL 127 (287)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l 127 (287)
....+||+.++++|++-+=|++- -| +| .+|. +...++++.+
T Consensus 73 ~~M~~di~~~~~~GadGvV~G~L----~~--dg-~vD~---~~~~~Li~~a 113 (248)
T PRK11572 73 AAMLEDIATVRELGFPGLVTGVL----DV--DG-HVDM---PRMRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeE----CC--CC-CcCH---HHHHHHHHHh
Confidence 45678999999999999888863 22 47 8995 4456666665
No 269
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=21.44 E-value=6.9e+02 Score=23.52 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=74.0
Q ss_pred cccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCc---HH------------hHhhcC---------CCC---
Q 023097 103 IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP---LH------------LHESMG---------GWL--- 155 (287)
Q Consensus 103 i~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P---~w------------l~~~~g---------gw~--- 155 (287)
..|...+ -++++.+..++++.+.++++|-..++=|+|.+.- .+ .... + +..
T Consensus 63 ~~~~~~~-l~~d~~i~~lr~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~-~~~~~~~~~~~~~~p~ 140 (338)
T cd02933 63 GYPNTPG-IYTDEQVEGWKKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAE-GKVFTPAGKVPYPTPR 140 (338)
T ss_pred CCCCCCc-cCCHHHHHHHHHHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCC-cccccccccCCCCCCC
Confidence 3443334 5688889999999999999999999999995421 10 0000 0 111
Q ss_pred ------ChHHHHHHHHHHHHHHHHhC-CCccEEEEecCCccccccCcccccc-CCCC-CCCCCchhHHHHHHHHHHHHHH
Q 023097 156 ------NKEIVKYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIF-APGR-HQHSSTEPYLVAHHQILAHAAA 226 (287)
Q Consensus 156 ------~~~~~~~f~~ya~~v~~~~~-d~V~~w~t~NEP~~~~~~gy~~g~~-~p~~-~~~~~~~~~~~~hn~l~AHa~a 226 (287)
-.++++.|++=|+.+.+ -| |-|. +.+-.||+...| .|.. +..+. .--.+-|=+.--.++
T Consensus 141 ~mt~~eI~~ii~~f~~aA~~a~~-aGfDgVe---------ih~ahGyLl~qFlSp~~N~R~D~--yGGslenR~rf~~ei 208 (338)
T cd02933 141 ALTTEEIPGIVADFRQAARNAIE-AGFDGVE---------IHGANGYLIDQFLRDGSNKRTDE--YGGSIENRARFLLEV 208 (338)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-cCCCEEE---------EccccchhHHHhcCCccCCCCCc--CCCcHHHhhhHHHHH
Confidence 11467777775554444 33 3332 234457776544 3321 11111 111244555555667
Q ss_pred HHHHHHhccCCCCceEEeeecCceee
Q 023097 227 FSVYQRKYKDKQGGNIGLVVDCEWAE 252 (287)
Q Consensus 227 ~~~~r~~~~~~~~~kIG~~~~~~~~~ 252 (287)
++.+|+... .+ .||+-++...+.
T Consensus 209 i~air~~vg--~d-~v~vRis~~~~~ 231 (338)
T cd02933 209 VDAVAEAIG--AD-RVGIRLSPFGTF 231 (338)
T ss_pred HHHHHHHhC--CC-ceEEEECccccC
Confidence 777777542 23 588887765443
No 270
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=21.34 E-value=1.5e+02 Score=22.67 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=25.9
Q ss_pred ccChhHHHHHHHHHHHHHHCCCeeEEEe
Q 023097 111 KINMEGITFYNNIIDALLQKGIQPYVTL 138 (287)
Q Consensus 111 ~~n~~~~~~y~~~i~~l~~~GI~p~vtL 138 (287)
.+|..|++...++.+.++++|++++++=
T Consensus 60 ~iDssgi~~L~~~~~~~~~~g~~~~l~~ 87 (117)
T PF01740_consen 60 FIDSSGIQALVDIIKELRRRGVQLVLVG 87 (117)
T ss_dssp EESHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5789999999999999999999999874
No 271
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=21.13 E-value=3.3e+02 Score=24.45 Aligned_cols=89 Identities=16% Similarity=0.260 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCC--ccccccCcCccccCCCCC--ccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCC
Q 023097 80 KEDIDLIAKLGFD--AYRFSISWSRIFPDGLGT--KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWL 155 (287)
Q Consensus 80 ~eDi~l~~~lG~~--~~R~si~W~ri~P~~~g~--~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~ 155 (287)
.+-++.+++.|+. ++=+++.|..-. + .. .+|.+.+.-..++|+.|+++|++.++.++ |.
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~~~~~~--~-~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~----P~---------- 89 (265)
T cd06589 27 LEVIDGMRENDIPLDGFVLDDDYTDGY--G-DFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID----PY---------- 89 (265)
T ss_pred HHHHHHHHHcCCCccEEEECcccccCC--c-eeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC----hh----------
Confidence 3445555555544 444455554321 1 11 34444455568899999999999999774 31
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCcc-EEEEecCCccc
Q 023097 156 NKEIVKYFEIYADTCFASFGDRVK-NWITINEPLQT 190 (287)
Q Consensus 156 ~~~~~~~f~~ya~~v~~~~~d~V~-~w~t~NEP~~~ 190 (287)
+.+.|.+..+.+. +..-|+ +|+=+|||...
T Consensus 90 ---v~~w~~~~~~~~~--~~~Gvdg~w~D~~E~~~~ 120 (265)
T cd06589 90 ---IREWWAEVVKKLL--VSLGVDGFWTDMGEPSPG 120 (265)
T ss_pred ---HHHHHHHHHHHhh--ccCCCCEEeccCCCCCcC
Confidence 1344444343332 222344 48899999765
No 272
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.08 E-value=2.5e+02 Score=25.70 Aligned_cols=72 Identities=11% Similarity=0.038 Sum_probs=50.8
Q ss_pred cccccCcHHHHHHHHHcCCCccccccCcCccccCC-CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHh
Q 023097 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE 149 (287)
Q Consensus 73 ~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~ 149 (287)
.+......+-.+.+|++|+..+|-++.=+|=-|.. .| + +.+.+..+-+.+++.||..+.+.+.-..+..+.+
T Consensus 37 ie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G--~---g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~ 109 (266)
T PRK13398 37 VESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQG--L---GEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVAD 109 (266)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCC--c---HHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHH
Confidence 34455566778889999999999986446655543 12 2 2456677777789999999999987665555543
No 273
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=21.07 E-value=1.5e+02 Score=25.24 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=41.2
Q ss_pred cccccccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEE
Q 023097 71 VAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (287)
Q Consensus 71 ~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vt 137 (287)
.+.|.+-.-...+..+..+.++.++++.++-+-.... .......+.+++.++..|++++++
T Consensus 149 ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~------~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 149 IALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTD------PEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred EEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccC------hhHHHHHHHHHHHHHHCCCeEEEe
Confidence 4455554445667777777777777776654433321 123467889999999999999886
No 274
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=21.07 E-value=64 Score=29.04 Aligned_cols=60 Identities=20% Similarity=0.151 Sum_probs=37.7
Q ss_pred cccCcHHHHHHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEE
Q 023097 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (287)
Q Consensus 75 ~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vt 137 (287)
...+.+.=+++++++|.+.+++-..+..-.+. . ..-...++.++++.+.++++||+..+-
T Consensus 83 ~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~--~-~~~~~~~~~l~~l~~~a~~~gi~l~lE 142 (279)
T cd00019 83 SIERLKDEIERCEELGIRLLVFHPGSYLGQSK--E-EGLKRVIEALNELIDKAETKGVVIALE 142 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCCCCCH--H-HHHHHHHHHHHHHHHhccCCCCEEEEe
Confidence 44556677899999999998874432211011 1 111234567777777777889876664
No 275
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.01 E-value=1.4e+02 Score=26.48 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=46.1
Q ss_pred ccCcHHHHHHHHHcCCCcccc-c-cCcCcc------ccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEecc
Q 023097 76 YHRYKEDIDLIAKLGFDAYRF-S-ISWSRI------FPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (287)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~-s-i~W~ri------~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h 140 (287)
.+..++-+..+-+ |...-+= + ++|||. .+...| .+...+......+|+..+++|++-++|..-
T Consensus 76 P~mL~~vF~~Ll~-~~~~P~~p~vwEsSRF~vd~~~a~~~~g-~~~~a~~el~~g~ie~a~~~G~~~IvtVt~ 146 (209)
T COG3916 76 PYMLTDVFPALLE-GGPPPSSPGVWESSRFAVDKPSARRAAG-GVSPAAYELFAGMIEYALARGITGIVTVTD 146 (209)
T ss_pred cchhhhhhHHHhc-CCCCCCCCCeEEEeeeeeccccchhhcC-CccHHHHHHHHHHHHHHHHcCCceEEEEEc
Confidence 4555666666666 3343333 4 488888 455446 777788899999999999999999999863
No 276
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=20.95 E-value=3.1e+02 Score=30.62 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=19.0
Q ss_pred cccCcHHH-----HHHHHHcCCCccccc
Q 023097 75 HYHRYKED-----IDLIAKLGFDAYRFS 97 (287)
Q Consensus 75 ~~~~~~eD-----i~l~~~lG~~~~R~s 97 (287)
.|..|.+| ++..++.|++.+|+.
T Consensus 618 gy~~ypd~vv~~f~~~~~~~Gidifrif 645 (1143)
T TIGR01235 618 GYTNYPDNVVKYFVKQAAQGGIDIFRVF 645 (1143)
T ss_pred CccCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 48888888 577799999999964
No 277
>PLN02411 12-oxophytodienoate reductase
Probab=20.58 E-value=7.7e+02 Score=23.76 Aligned_cols=124 Identities=16% Similarity=0.180 Sum_probs=71.8
Q ss_pred ccChhHHHHHHHHHHHHHHCCCeeEEEeccCCC---cHHh--------------H------hhcC---C------CCC--
Q 023097 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLHL--------------H------ESMG---G------WLN-- 156 (287)
Q Consensus 111 ~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~---P~wl--------------~------~~~g---g------w~~-- 156 (287)
-++++-+.-+.++.+.++++|-+.++=|+|-+- |.+. . ...+ . ...
T Consensus 80 i~~d~~i~~~~~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~e 159 (391)
T PLN02411 80 IYSDEQVEAWKKVVDAVHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSE 159 (391)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHH
Confidence 668888999999999999999999999999442 1000 0 0000 0 001
Q ss_pred -hHHHHHHHHHHHHHHHHhC-CCccEEEEecCCccccccCcccccc-CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 023097 157 -KEIVKYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIF-APGRHQHSSTEPYLVAHHQILAHAAAFSVYQRK 233 (287)
Q Consensus 157 -~~~~~~f~~ya~~v~~~~~-d~V~~w~t~NEP~~~~~~gy~~g~~-~p~~~~~~~~~~~~~~hn~l~AHa~a~~~~r~~ 233 (287)
.++++.|++=|+++.+ =| |-|. +.+-.||+...| .|.. +...-+.-=..-|=++--..+++.+|+.
T Consensus 160 I~~ii~~f~~AA~rA~~-AGFDGVE---------IH~AhGYLl~QFLSp~t-N~RtDeYGGSlENR~RF~lEIi~aVr~~ 228 (391)
T PLN02411 160 IPEVVEHYRQAALNAIR-AGFDGIE---------IHGAHGYLIDQFLKDGI-NDRTDEYGGSIENRCRFLMQVVQAVVSA 228 (391)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCEEE---------EccccchHHHHhCCCcc-CCCCCcCCCCHHHHhHHHHHHHHHHHHH
Confidence 1356777775555544 22 3332 445668887654 3432 1000011112445566666778888886
Q ss_pred ccCCCCceEEeeecC
Q 023097 234 YKDKQGGNIGLVVDC 248 (287)
Q Consensus 234 ~~~~~~~kIG~~~~~ 248 (287)
.. ++ .||+-++.
T Consensus 229 vg--~d-~vgvRiS~ 240 (391)
T PLN02411 229 IG--AD-RVGVRVSP 240 (391)
T ss_pred cC--CC-eEEEEEcc
Confidence 53 34 58888874
No 278
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=20.57 E-value=4e+02 Score=25.81 Aligned_cols=87 Identities=15% Similarity=0.165 Sum_probs=54.5
Q ss_pred cHHHHHHHHHc-CCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeE-EEeccCCCcHHhHhhcCCCCC
Q 023097 79 YKEDIDLIAKL-GFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWLN 156 (287)
Q Consensus 79 ~~eDi~l~~~l-G~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~-vtL~h~~~P~wl~~~~ggw~~ 156 (287)
--+|++.++.+ |+. .++++- .|.+ . . ..+.++.+.++++||++. ++...|..|.+ ++|.+.+
T Consensus 42 ~~~d~~~v~~L~~~~-~~v~lH----~~~d-~-~------~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~---~~GSLt~ 105 (378)
T TIGR02635 42 KIEDAALVHRLTGIC-PTVALH----IPWD-R-V------EDYEELARYAEELGLKIGAINPNLFQDDDY---KFGSLTH 105 (378)
T ss_pred HHHHHHHHHhhcCCC-Cceeec----cCCc-c-c------cCHHHHHHHHHHcCCceeeeeCCccCCccc---CCCCCCC
Confidence 34677777777 554 666652 2211 2 2 237778888999999998 77776655644 3466766
Q ss_pred h--HHHHHHHHHHHHH---HHHhCCC-ccEE
Q 023097 157 K--EIVKYFEIYADTC---FASFGDR-VKNW 181 (287)
Q Consensus 157 ~--~~~~~f~~ya~~v---~~~~~d~-V~~w 181 (287)
+ ++.+.-.++++.+ ++.+|.. |..|
T Consensus 106 pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW 136 (378)
T TIGR02635 106 PDKRIRRKAIDHLLECVDIAKKTGSKDISLW 136 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 5 4556666777665 4677764 4444
No 279
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=20.47 E-value=1.7e+02 Score=25.50 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=26.0
Q ss_pred ccChhHHHHHHHHHHHHHHCCCeeEEEecc
Q 023097 111 KINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (287)
Q Consensus 111 ~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h 140 (287)
.+|.+......++|..++++|..++++.|+
T Consensus 166 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 195 (240)
T PRK09493 166 ALDPELRHEVLKVMQDLAEEGMTMVIVTHE 195 (240)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 589888889999999998889998888775
No 280
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=20.44 E-value=2.6e+02 Score=26.92 Aligned_cols=59 Identities=14% Similarity=0.226 Sum_probs=45.2
Q ss_pred CCCccccccCcCccc--cCCCCCccC-hhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHh
Q 023097 90 GFDAYRFSISWSRIF--PDGLGTKIN-MEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE 149 (287)
Q Consensus 90 G~~~~R~si~W~ri~--P~~~g~~~n-~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~ 149 (287)
++.--|.+..|.-+. |..+| .+| .+|+...++++..+.+.|+-..--+..-..|+.+.+
T Consensus 94 y~eKPRTs~gwkGl~~DP~ldg-s~~i~~GL~i~R~ll~~~~~~GlPvatE~ld~~~~qy~~D 155 (356)
T PRK12822 94 YFEKPRTRKGWKGLIFDPDLDG-SNDIEKGLRLARQLLLSINTLGLATATEFLDTTSFPYIAD 155 (356)
T ss_pred ccccCCCCCCccccccCCCCCC-CccHHHHHHHHHHHHHHHHHhCCCEEEeecccccHHHHHH
Confidence 444468888899885 54467 777 689999999999999999987777765556766554
No 281
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=20.29 E-value=3.6e+02 Score=24.50 Aligned_cols=76 Identities=16% Similarity=0.149 Sum_probs=46.0
Q ss_pred ccChhHHHHHHHHHHHHHHCCCee--EEEe---------------ccCCCcHHhHhhcCCCCC-h-HHHHHHHHHHHHHH
Q 023097 111 KINMEGITFYNNIIDALLQKGIQP--YVTL---------------YHWDLPLHLHESMGGWLN-K-EIVKYFEIYADTCF 171 (287)
Q Consensus 111 ~~n~~~~~~y~~~i~~l~~~GI~p--~vtL---------------~h~~~P~wl~~~~ggw~~-~-~~~~~f~~ya~~v~ 171 (287)
-|| .+.+.++++.|++.||++ ++++ ..-.+|.|+.++.....+ + +..+.-.++|..++
T Consensus 166 ~fd---~~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~~~~~~~~~~~~~gi~~~~~~~ 242 (272)
T TIGR00676 166 FFD---NDDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAERCGAEIPAWLVKRLEKYDDDPEEVRAVGIEYATDQC 242 (272)
T ss_pred ccC---HHHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHhccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 467 467889999999997652 2222 245578888776543322 2 23456677777777
Q ss_pred HHhCCC-cc--EEEEecCCcc
Q 023097 172 ASFGDR-VK--NWITINEPLQ 189 (287)
Q Consensus 172 ~~~~d~-V~--~w~t~NEP~~ 189 (287)
+++.+. ++ +..|+|=+..
T Consensus 243 ~~l~~~g~~GiHl~t~n~~~~ 263 (272)
T TIGR00676 243 EDLIAEGVPGIHFYTLNRADA 263 (272)
T ss_pred HHHHHCCCCEEEEcCCCCHHH
Confidence 766433 43 4555776554
No 282
>PLN02417 dihydrodipicolinate synthase
Probab=20.18 E-value=5.1e+02 Score=23.56 Aligned_cols=67 Identities=9% Similarity=0.114 Sum_probs=48.5
Q ss_pred CCCccChhHHHHHHHHHHHHHHCCCeeEEEeccCCCcHHhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCccEEEEecCC
Q 023097 108 LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEP 187 (287)
Q Consensus 108 ~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEP 187 (287)
+| .+|. +-++++++.+.+.|+.-++.+-+-+ - ...-+.+...+..+.+.+.-+++++...-...+
T Consensus 16 ~g-~iD~---~~~~~~i~~l~~~Gv~Gi~~~GstG----------E-~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~ 80 (280)
T PLN02417 16 DG-RFDL---EAYDSLVNMQIENGAEGLIVGGTTG----------E-GQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSN 80 (280)
T ss_pred CC-CcCH---HHHHHHHHHHHHcCCCEEEECccCc----------c-hhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCc
Confidence 47 8994 6689999999999999998775421 1 111235566777778888888889888777766
Q ss_pred cc
Q 023097 188 LQ 189 (287)
Q Consensus 188 ~~ 189 (287)
+.
T Consensus 81 ~t 82 (280)
T PLN02417 81 ST 82 (280)
T ss_pred cH
Confidence 54
No 283
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=20.13 E-value=5e+02 Score=22.94 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHCCCeeEE
Q 023097 115 EGITFYNNIIDALLQKGIQPYV 136 (287)
Q Consensus 115 ~~~~~y~~~i~~l~~~GI~p~v 136 (287)
++++++.+.|+.+.+-|...++
T Consensus 81 ~~~~~l~~~i~~A~~lGa~~vv 102 (273)
T smart00518 81 KSIERLIDEIKRCEELGIKALV 102 (273)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE
Confidence 4455566666666666655433
No 284
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=20.11 E-value=2.1e+02 Score=26.10 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=38.9
Q ss_pred HHHHHcCCCccccccCcCccccCCCCCccChhHHHHHHHHHHHHHHCCCeeEEEec
Q 023097 84 DLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (287)
Q Consensus 84 ~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~~~~y~~~i~~l~~~GI~p~vtL~ 139 (287)
.+++++|++.+=++-|=.|..=. +-| +....-+..++++|++|+++.-
T Consensus 82 ~mL~d~G~~~viiGHSERR~~~~----E~d----~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 82 EMLKDLGAKYVLIGHSERRLYFG----ETD----ELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHcCCCEEEECccccccccc----cch----HHHHHHHHHHHHCCCeEEEEcC
Confidence 78999999999999886665332 333 5778899999999999999974
Done!