Query 023099
Match_columns 287
No_of_seqs 159 out of 275
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:26:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3058 Uncharacterized conser 100.0 1.5E-56 3.3E-61 420.4 16.8 241 16-267 51-309 (351)
2 PF14360 PAP2_C: PAP2 superfam 99.9 5E-26 1.1E-30 172.5 8.7 71 172-243 1-73 (74)
3 PF14378 PAP2_3: PAP2 superfam 98.0 5.5E-05 1.2E-09 66.3 10.7 63 175-237 126-188 (191)
4 cd03386 PAP2_Aur1_like PAP2_li 97.5 0.0024 5.2E-08 55.9 13.4 69 172-241 114-182 (186)
5 PF01569 PAP2: PAP2 superfamil 97.0 0.0033 7.2E-08 50.4 7.5 69 174-242 48-121 (129)
6 cd03393 PAP2_like_3 PAP2_like_ 96.8 0.0035 7.5E-08 51.3 6.4 64 176-239 59-122 (125)
7 cd03383 PAP2_diacylglycerolkin 96.8 0.0057 1.2E-07 49.6 7.2 62 177-238 41-102 (109)
8 cd01610 PAP2_like PAP2_like pr 96.7 0.0046 9.9E-08 48.4 6.3 67 173-239 49-119 (122)
9 cd03385 PAP2_BcrC_like PAP2_li 96.6 0.0081 1.7E-07 50.4 7.1 66 175-241 77-142 (144)
10 cd03394 PAP2_like_5 PAP2_like_ 96.5 0.0049 1.1E-07 49.0 5.3 62 176-237 40-101 (106)
11 smart00014 acidPPc Acid phosph 96.1 0.016 3.5E-07 46.3 5.9 62 177-238 47-112 (116)
12 cd03395 PAP2_like_4 PAP2_like_ 95.9 0.023 5E-07 49.2 6.7 65 174-238 103-167 (177)
13 COG0671 PgpB Membrane-associat 95.8 0.032 7E-07 47.5 6.9 66 174-239 133-205 (232)
14 cd03389 PAP2_lipid_A_1_phospha 95.6 0.038 8.2E-07 48.5 6.7 65 176-242 119-183 (186)
15 cd03391 PAP2_containing_2_like 95.4 0.042 9.1E-07 47.2 6.1 63 177-239 93-156 (159)
16 PLN02731 Putative lipid phosph 95.0 0.072 1.5E-06 51.4 7.1 74 177-250 181-268 (333)
17 PLN02250 lipid phosphate phosp 95.0 0.12 2.5E-06 49.5 8.4 73 177-249 163-249 (314)
18 cd03392 PAP2_like_2 PAP2_like_ 94.8 0.12 2.5E-06 44.7 7.4 65 173-237 99-171 (182)
19 PRK09597 lipid A 1-phosphatase 94.7 0.12 2.6E-06 46.0 7.2 63 177-241 121-184 (190)
20 PRK10699 phosphatidylglyceroph 94.2 0.19 4.1E-06 46.5 7.7 63 174-236 155-221 (244)
21 cd03388 PAP2_SPPase1 PAP2_like 94.1 0.14 3E-06 43.3 6.1 60 177-236 80-145 (151)
22 PRK11837 undecaprenyl pyrophos 93.9 0.16 3.5E-06 45.4 6.5 63 176-239 104-166 (202)
23 cd03390 PAP2_containing_1_like 93.9 0.13 2.8E-06 45.2 5.7 64 177-240 112-188 (193)
24 PLN02715 lipid phosphate phosp 93.7 0.27 5.8E-06 47.3 7.9 68 177-244 187-267 (327)
25 cd03397 PAP2_acid_phosphatase 93.7 0.17 3.8E-06 46.1 6.3 62 176-239 151-212 (232)
26 cd03384 PAP2_wunen PAP2, wunen 93.5 0.17 3.7E-06 42.9 5.6 63 177-239 74-147 (150)
27 cd03381 PAP2_glucose_6_phospha 93.0 0.31 6.6E-06 44.8 6.8 63 174-236 71-145 (235)
28 cd03396 PAP2_like_6 PAP2_like_ 92.7 0.45 9.7E-06 42.0 7.3 70 173-242 120-194 (197)
29 cd03380 PAP2_like_1 PAP2_like_ 92.6 0.22 4.8E-06 44.2 5.2 60 177-238 145-204 (209)
30 KOG3030 Lipid phosphate phosph 90.5 1.5 3.2E-05 42.1 8.7 69 177-245 181-261 (317)
31 PLN02525 phosphatidic acid pho 90.0 0.84 1.8E-05 44.4 6.6 61 177-237 86-156 (352)
32 cd03382 PAP2_dolichyldiphospha 89.4 1.2 2.6E-05 38.1 6.4 30 208-237 125-154 (159)
33 cd03398 PAP2_haloperoxidase PA 75.1 7.6 0.00016 35.2 5.9 62 177-238 147-227 (232)
34 KOG4268 Uncharacterized conser 70.0 14 0.0003 32.3 5.9 32 205-236 140-171 (189)
35 COG0690 SecE Preprotein transl 43.3 31 0.00067 25.9 3.2 38 8-45 19-57 (73)
36 PF00584 SecE: SecE/Sec61-gamm 40.0 32 0.0007 24.1 2.7 38 10-47 3-41 (57)
37 TIGR00964 secE_bact preprotein 35.3 53 0.0012 23.0 3.3 36 11-46 3-39 (55)
38 PRK07597 secE preprotein trans 34.0 57 0.0012 23.5 3.4 38 9-46 10-48 (64)
39 KOG2736 Presenilin [Signal tra 26.8 2.4E+02 0.0052 28.0 7.1 100 28-129 16-124 (406)
40 KOG3146 Dolichyl pyrophosphate 25.7 63 0.0014 29.6 2.7 67 203-272 134-203 (228)
41 KOG2822 Sphingoid base-phospha 23.9 1.4E+02 0.0031 29.6 5.0 74 177-250 159-244 (407)
42 PRK05740 secE preprotein trans 23.7 92 0.002 24.4 3.1 40 7-46 34-74 (92)
43 PF03248 Rer1: Rer1 family; I 23.3 4E+02 0.0086 23.6 7.2 64 200-263 25-90 (176)
44 PRK11340 phosphodiesterase Yae 21.5 37 0.0008 31.3 0.5 10 173-182 202-211 (271)
No 1
>KOG3058 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-56 Score=420.38 Aligned_cols=241 Identities=32% Similarity=0.440 Sum_probs=199.7
Q ss_pred hcccccccchhhHHHHHHHHHHHHHHHHHhhccceeEEeec--C--CCCCCcccccccCCCCCchhhHHHHHHHHH-HHH
Q 023099 16 ICSETTIEISLLAENWKIILGGIIFQYIHGLAAHAVHYLHQ--P--GPLLQDSGYALIPELGEDKAYISETLFSFL-FFS 90 (287)
Q Consensus 16 i~~~~~~e~~~~~~~wKt~l~~~~~~~~~~~~~~~~~y~h~--p--~~pLpDi~f~~~p~i~~~~~~vse~l~~~~-~~~ 90 (287)
+.++.+-+++.+.|+|||++++++....+.++..++.|+|| | +|||||++||++|+++|++ .++|++++++ +++
T Consensus 51 ~~~~~~~~~~~~~~~~kt~lafl~~~~~~~l~~v~l~~vHervP~~~pPLPDi~f~~vp~i~wa~-~~~e~~~~~~~~~~ 129 (351)
T KOG3058|consen 51 IRRPKSKRDRRPSEWWKTLLAFLYLFVAALLNSVTLVYVHERVPDPYPPLPDIFFDLVPEIPWAF-SLCEIIGMILVVLL 129 (351)
T ss_pred cccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcHHHHhcccchHHH-HHHHHHHHHHHHHH
Confidence 44555666777899999999999999999999999999999 5 5999999999999999987 7999988655 444
Q ss_pred HHHHhhcccccccCchhHHHHHHHHHHHHHHHHHHhhhheeeeecCCCCCCCCCCcc-cCCCCCchhHHhhhhhccCCCc
Q 023099 91 FVLWTFHPFVFQSKSFHTVLLWCRVLACLVVCQMLRIVTFYSTQLPGPNYHCREGSK-LARLPRPESVVEVLLINFPRGM 169 (287)
Q Consensus 91 ~vl~~~~~~~~~~~R~~~~ii~rR~~~~~~~~yllR~iti~vT~LP~P~~~C~~~~~-~a~~~~p~~~~~~~~i~f~~G~ 169 (287)
+++|+ +|++| ++++||+++++|++|++||+||++|+||.|++||+|.++ ++.++ ....+++.++.+.|.
T Consensus 130 f~ll~-----fH~~r---~iv~rR~~f~~gt~y~lR~iTm~vT~LPvP~~h~~C~~k~~~~~~--~~~~r~l~~~~~~G~ 199 (351)
T KOG3058|consen 130 FTLLL-----FHQHR---WIVLRRVFFLLGTLYLLRCITMYVTQLPVPGQHFRCAPKPNGDLG--EFLHRALEIWSGLGL 199 (351)
T ss_pred HHHHH-----Hhcch---hhHHHHHHHHHHHHHHHhhheeEEEecccCCCCcccCCcccccHH--HHHHHHHHHHHhcCc
Confidence 55554 56676 699999999999999999999999999999999999887 44332 222344444444332
Q ss_pred ----cccccceeecccHHHHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHHHHhh
Q 023099 170 ----IYGCGDLIFSSHMIFTLLFVLTYHKYGTIRF--IKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVFFINK 243 (287)
Q Consensus 170 ----~~~CgDliFSGHt~~l~l~~l~~~~Y~~~~~--~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~~~~~~ 243 (287)
..+||||||||||++++++++++.||+|+++ +++++|+++++|+++|++||+||||||++|||+++++|+++++
T Consensus 200 s~~~~~lCGDlmfSGHTlvl~~~~l~~~eY~pr~~~~L~~i~wll~~~gi~~il~sr~HYTIDVvvAyyittrvfw~yh~ 279 (351)
T KOG3058|consen 200 SLFGVRLCGDLMFSGHTLVLTLTALFITEYSPRRFIILHWISWLLAFVGIFLILASRKHYTIDVVVAYYITTRVFWSYHA 279 (351)
T ss_pred cccccCcccceeeecchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhCCceeEEEEEehhhHHHHHHHHHH
Confidence 2379999999999999999999999999996 7889999999999999999999999999999999999998888
Q ss_pred hCCCCCCCCCCCC------ccccccccccC
Q 023099 244 KLPELPDRSNASA------SLQFLPVSSRD 267 (287)
Q Consensus 244 ~~~~~~~r~~~~~------~~~~~~~~~~~ 267 (287)
+.++.+.|+.-.. --|..+|++++
T Consensus 280 ~a~~~~~~~~~~~~lak~~w~~~~~~fe~d 309 (351)
T KOG3058|consen 280 KAAELKLRTSQQSILAKDWWFPLVRWFELD 309 (351)
T ss_pred hccccchhhhhhhhHHhhcccchhhhhhhc
Confidence 8887665444211 12688888776
No 2
>PF14360 PAP2_C: PAP2 superfamily C-terminal
Probab=99.93 E-value=5e-26 Score=172.47 Aligned_cols=71 Identities=58% Similarity=0.968 Sum_probs=67.7
Q ss_pred cccceeecccHHHHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHHHHhh
Q 023099 172 GCGDLIFSSHMIFTLLFVLTYHKYGTIRF--IKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVFFINK 243 (287)
Q Consensus 172 ~CgDliFSGHt~~l~l~~l~~~~Y~~~~~--~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~~~~~~ 243 (287)
+||||||||||++++++++++.+|+|+++ .|+++|+++++++++++++|+||||||++|+++++++| ++||
T Consensus 1 ~CgDliFSGHt~~~~l~~l~~~~y~~~~~~~~~~~~~~~~~~~~~~ii~sr~HYTvDV~~a~~it~~~f-~~yH 73 (74)
T PF14360_consen 1 GCGDLIFSGHTAFLTLCALFWWEYSPRRFWVLKVIMWLLAIIGSFLIIASRKHYTVDVVLAYYITSLVF-WLYH 73 (74)
T ss_pred CCCCEEEchhHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHcCCCceeehhhHHHHHHHHH-HHhc
Confidence 59999999999999999999999999987 99999999999999999999999999999999999998 5555
No 3
>PF14378 PAP2_3: PAP2 superfamily
Probab=98.02 E-value=5.5e-05 Score=66.33 Aligned_cols=63 Identities=17% Similarity=0.299 Sum_probs=56.8
Q ss_pred ceeecccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHH
Q 023099 175 DLIFSSHMIFTLLFVLTYHKYGTIRFIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLV 237 (287)
Q Consensus 175 DliFSGHt~~l~l~~l~~~~Y~~~~~~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v 237 (287)
+-+-|+|++...++.+.++++.++++.+.+.+++++...+-.+..+.||.+|++.|..++...
T Consensus 126 ~afPSlH~a~a~l~~~~~~~~~~~~~~~~~~~~~~~~i~~stv~~~~HY~iDv~aG~~la~~~ 188 (191)
T PF14378_consen 126 AAFPSLHVAWAVLCALALWRVGRPRWLRALFLAFNVLILFSTVYTGQHYVIDVIAGAALALLA 188 (191)
T ss_pred cccCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 369999999999999999998888888889999999999999999999999999998776543
No 4
>cd03386 PAP2_Aur1_like PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin.
Probab=97.54 E-value=0.0024 Score=55.87 Aligned_cols=69 Identities=17% Similarity=0.153 Sum_probs=56.8
Q ss_pred cccceeecccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHHHH
Q 023099 172 GCGDLIFSSHMIFTLLFVLTYHKYGTIRFIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVFFI 241 (287)
Q Consensus 172 ~CgDliFSGHt~~l~l~~l~~~~Y~~~~~~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~~~~ 241 (287)
.-.+-+=|||++..+++..+..++.++ +.+.+.++..+..++-.+..+.||-+||+.|..+....+...
T Consensus 114 ~~~~~fPS~H~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~i~~s~v~~~~H~~~Dv~~G~~l~~~~~~~~ 182 (186)
T cd03386 114 NPFNAFPSLHVAWAVLAALFLWRHRRR-LLRWLAVLWPLLIWLSTLYLGNHYFIDLVGGIALALLSFYLA 182 (186)
T ss_pred CCcceeCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHHh
Confidence 355678899999998888888877654 567788888888888999999999999999998887666543
No 5
>PF01569 PAP2: PAP2 superfamily This family includes the following Prosite family; InterPro: IPR000326 This entry represents type 2 phosphatidic acid phosphatase (PAP2; 3.1.3.4 from EC) enzymes, such as phosphatidylglycerophosphatase B 3.1.3.27 from EC from Escherichia coli. PAP2 enzymes have a core structure consisting of a 5-helical bundle, where the beginning of the third helix binds the cofactor []. PAP2 enzymes catalyse the dephosphorylation of phosphatidate, yielding diacylglycerol and inorganic phosphate []. In eukaryotic cells, PAP activity has a central role in the synthesis of phospholipids and triacylglycerol through its product diacylglycerol, and it also generates and/or degrades lipid-signalling molecules that are related to phosphatidate. Other related enzymes have a similar core structure, including haloperoxidases such as bromoperoxidase (contains one core bundle, but forms a dimer), chloroperoxidases (contains two core bundles arranged as in other family dimers), bacitracin transport permease from Bacillus licheniformis, glucose-6-phosphatase from rat. The vanadium-dependent haloperoxidases exclusively catalyse the oxidation of halides, and act as histidine phosphatases, using histidine for the nucleophilic attack in the first step of the reaction []. Amino acid residues involved in binding phosphate/vanadate are conserved between the two families, supporting a proposal that vanadium passes through a tetrahedral intermediate during the reaction mechanism.; GO: 0003824 catalytic activity, 0016020 membrane; PDB: 1QI9_B 1IW8_A 1EOI_A 1D2T_A 1QHB_D 1UP8_C 2IPB_A 1VNS_A 1VNF_A 1VNE_A ....
Probab=96.99 E-value=0.0033 Score=50.37 Aligned_cols=69 Identities=19% Similarity=0.137 Sum_probs=50.9
Q ss_pred cceeecccHHHHHHHHHHHHHhcCchHHH-----HHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHHHHh
Q 023099 174 GDLIFSSHMIFTLLFVLTYHKYGTIRFIK-----QSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVFFIN 242 (287)
Q Consensus 174 gDliFSGHt~~l~l~~l~~~~Y~~~~~~k-----~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~~~~~ 242 (287)
+.=+-|||++.....+.+...+.+++... ...+..+...+.--+.+..||-.||+.|..+........+
T Consensus 48 ~~sfPSgH~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~srv~~g~H~~~Dvi~G~~lg~~~~~~~~ 121 (129)
T PF01569_consen 48 FNSFPSGHAAIAAAFAFFLAYYLGSRGWIRILLFLLAIVLAFLVALSRVYLGAHFFSDVIAGILLGILIAYLFY 121 (129)
T ss_dssp S-SSS-HHHHHHHHHHHHHHHHCCCCHHHSEEHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCcCcchhhhhHHHHHhhhhhhhhccccccchhhHHHHHHHHHhhcCEEEcCeEehHHHHHHHHHHHHHHHHHH
Confidence 34568999998888778777777665433 4566677788888999999999999999988876655443
No 6
>cd03393 PAP2_like_3 PAP2_like_3 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria and archaea, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=96.82 E-value=0.0035 Score=51.33 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=42.7
Q ss_pred eeecccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHH
Q 023099 176 LIFSSHMIFTLLFVLTYHKYGTIRFIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVF 239 (287)
Q Consensus 176 liFSGHt~~l~l~~l~~~~Y~~~~~~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~~ 239 (287)
=+=|||++..+..........++++...+..++.+..++.-+....||-.||+.|..+.....+
T Consensus 59 sFPSgHa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sRv~lg~H~~sDVl~G~~lG~~~~~ 122 (125)
T cd03393 59 GFPSGHAQTSATFWGSLMLHVRKKWFTLIGVVLVVLISFSRLYLGVHWPSDVIGGVLIGLLVLV 122 (125)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 3679999865543333322234445455555556666677788889999999999988765544
No 7
>cd03383 PAP2_diacylglycerolkinase PAP2_like proteins, diacylglycerol_kinase like sub-family. In some prokaryotes, PAP2_like phosphatase domains appear fused to E. coli DAGK-like trans-membrane diacylglycerol kinase domains. The cellular function of these architectures remains to be determined.
Probab=96.76 E-value=0.0057 Score=49.63 Aligned_cols=62 Identities=18% Similarity=0.124 Sum_probs=44.5
Q ss_pred eecccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHH
Q 023099 177 IFSSHMIFTLLFVLTYHKYGTIRFIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVV 238 (287)
Q Consensus 177 iFSGHt~~l~l~~l~~~~Y~~~~~~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~ 238 (287)
+-||||+..+..+.+.....++++...+++++++..+.--+.-..||--||+.|..+.....
T Consensus 41 FPSgHt~~a~a~a~~l~~~~~~~~~~~~~~~~a~lv~~SRvylg~H~psDVlaG~~lG~~~~ 102 (109)
T cd03383 41 MPSGHAAIAFSIATAISLITNNPIISILSVLLAVMVAHSRVEMKIHTMWEVVVGAILGALIT 102 (109)
T ss_pred CChHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 78999987665555443323333445666677777778888889999999999998776543
No 8
>cd01610 PAP2_like PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies. Several members of this superfamily have been predicted to be transmembrane proteins.
Probab=96.73 E-value=0.0046 Score=48.44 Aligned_cols=67 Identities=22% Similarity=0.174 Sum_probs=51.7
Q ss_pred ccceeecccHHHHHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHH
Q 023099 173 CGDLIFSSHMIFTLLFVLTYHKYGTI----RFIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVF 239 (287)
Q Consensus 173 CgDliFSGHt~~l~l~~l~~~~Y~~~----~~~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~~ 239 (287)
-++=+-|||++.....+.....+.++ ++.....+.+.+..+.-.+..+.||-.||+.|..+...+..
T Consensus 49 ~~~sfPSgH~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sri~~g~H~~~Dv~~G~~lg~~~~~ 119 (122)
T cd01610 49 GGYSFPSGHAAFAFALALFLALLLPRRLLRLLLGLLLLLLALLVGLSRVYLGVHYPSDVLAGALLGILVAL 119 (122)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 34557899999887777777766554 25566777778888888899999999999999987765543
No 9
>cd03385 PAP2_BcrC_like PAP2_like proteins, BcrC_like subfamily. Several members of this family have been annotated as bacitracin transport permeases, as it was suspected that they form the permease component of an ABC transporter system. It was shown, however, that BcrC from Bacillus subtilis posesses undecaprenyl pyrophosphate (UPP) phospatase activity, and it is hypothesized that it competes with bacitracin for UPP, increasing the cell's resistance to bacitracin.
Probab=96.58 E-value=0.0081 Score=50.36 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=45.8
Q ss_pred ceeecccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHHHH
Q 023099 175 DLIFSSHMIFTLLFVLTYHKYGTIRFIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVFFI 241 (287)
Q Consensus 175 DliFSGHt~~l~l~~l~~~~Y~~~~~~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~~~~ 241 (287)
.=+=|||++..+.....+.... +++.+++.++.++..++--+.-..||-.||+.|..+........
T Consensus 77 ~SFPSgH~~~~~~~~~~l~~~~-~~~~~~~~~~~a~~v~~SRvylg~H~~sDVl~G~~lg~~~~~~~ 142 (144)
T cd03385 77 SSFPSDHTTLFFSIAFSLLLRR-RKWAGWILLILALLVAWSRIYLGVHYPLDMLGAALVAVLSALLV 142 (144)
T ss_pred CCCCcHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHH
Confidence 3457999987665554443322 33455666667777777788889999999999998877655443
No 10
>cd03394 PAP2_like_5 PAP2_like_5 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=96.54 E-value=0.0049 Score=49.04 Aligned_cols=62 Identities=18% Similarity=0.091 Sum_probs=42.9
Q ss_pred eeecccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHH
Q 023099 176 LIFSSHMIFTLLFVLTYHKYGTIRFIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLV 237 (287)
Q Consensus 176 liFSGHt~~l~l~~l~~~~Y~~~~~~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v 237 (287)
=+=|||++..+....+.....++++.....++..+..+.--+....||--||+.|..+...+
T Consensus 40 sfPSgHa~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sRv~~g~H~~sDV~~G~~lG~~~ 101 (106)
T cd03394 40 SFPSGHTASAFAAATFLQYRYGWRWYGIPAYALASLVGASRVVANRHWLSDVLAGAAIGILV 101 (106)
T ss_pred ccCcHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHh
Confidence 35699998765544444332233344555556666677778889999999999999877654
No 11
>smart00014 acidPPc Acid phosphatase homologues.
Probab=96.07 E-value=0.016 Score=46.27 Aligned_cols=62 Identities=23% Similarity=0.235 Sum_probs=45.8
Q ss_pred eecccHHHHHHHHHHHHHhcCchH----HHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHH
Q 023099 177 IFSSHMIFTLLFVLTYHKYGTIRF----IKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVV 238 (287)
Q Consensus 177 iFSGHt~~l~l~~l~~~~Y~~~~~----~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~ 238 (287)
+-|||++..+.+..+...+.++++ ...+.++..+..+.--+....||-.||+.|..+...+.
T Consensus 47 fPSgHa~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sRi~~g~H~~~Dv~~G~~lG~~v~ 112 (116)
T smart00014 47 FPSGHTAFAFAFALFLLLYLPARAARKLLIILLLLLALVVGFSRVYLGAHWPSDVLAGSLLGILIA 112 (116)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 569999987777777766655443 22345556677777788889999999999998877654
No 12
>cd03395 PAP2_like_4 PAP2_like_4 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=95.93 E-value=0.023 Score=49.17 Aligned_cols=65 Identities=15% Similarity=0.064 Sum_probs=44.7
Q ss_pred cceeecccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHH
Q 023099 174 GDLIFSSHMIFTLLFVLTYHKYGTIRFIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVV 238 (287)
Q Consensus 174 gDliFSGHt~~l~l~~l~~~~Y~~~~~~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~ 238 (287)
|.=+=||||+..+..+.......+++...++..++++..++--+....||--||+.|..+.....
T Consensus 103 ~~SFPSgHt~~a~~~~~~l~~~~~~~~~~~~~~~~~~~v~~SRvylG~H~psDVl~G~~lG~~~~ 167 (177)
T cd03395 103 SYSFASSHAANSFALALFIWLFFRRGLFSPVLLLWALLVGYSRVYVGVHYPGDVIAGALIGIISG 167 (177)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHH
Confidence 33456999997766555554444444344555566666777788888999999999998776543
No 13
>COG0671 PgpB Membrane-associated phospholipid phosphatase [Lipid metabolism]
Probab=95.78 E-value=0.032 Score=47.50 Aligned_cols=66 Identities=21% Similarity=0.088 Sum_probs=45.0
Q ss_pred cceeecccHHHHHHHHHHHHHhcCchH-------HHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHH
Q 023099 174 GDLIFSSHMIFTLLFVLTYHKYGTIRF-------IKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVF 239 (287)
Q Consensus 174 gDliFSGHt~~l~l~~l~~~~Y~~~~~-------~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~~ 239 (287)
|--+=||||+....++.....+.+.+. ...++++.++..++.-+....||-.||+.|..+......
T Consensus 133 ~~sfPSgHt~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~~SRv~lGvH~~~DVi~G~~~g~~~~~ 205 (232)
T COG0671 133 GYSFPSGHAAGAAAAALLLALLLPLRRALLRRVLLLILLLLLAALVGLSRVYLGVHYPSDVIGGALLGALAAL 205 (232)
T ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcccccchHHHhhHHHHHHHHH
Confidence 334679998876665555544443221 225666677777778888889999999999877765443
No 14
>cd03389 PAP2_lipid_A_1_phosphatase PAP2_like proteins, Lipid A 1-phosphatase subfamily. Lipid A 1-phosphatase, or LpxE from Francisella novicida selectively dephosphorylates lipid A at the 1-position. Lipid A is the membrane-anchor component of lipopolysaccharides (LPS), the major constituents of the outer membrane in many gram-negative bacteria.
Probab=95.59 E-value=0.038 Score=48.51 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=44.4
Q ss_pred eeecccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHHHHh
Q 023099 176 LIFSSHMIFTLLFVLTYHKYGTIRFIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVFFIN 242 (287)
Q Consensus 176 liFSGHt~~l~l~~l~~~~Y~~~~~~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~~~~~ 242 (287)
=+-||||+..+..+.+...+.++. +...+...+..++--+....||--||+.|..+...+....+
T Consensus 119 SFPSGHa~~a~~~~~~l~~~~~~~--~~~~~~~~~lv~~SRiylg~H~~sDVl~G~~lG~~~~~~~~ 183 (186)
T cd03389 119 SFPSGHSATAGAAAAALALLFPRY--RWAFILLALLIAFSRVIVGAHYPSDVIAGSLLGAVTALALY 183 (186)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 378999998766655554444432 33444555666667778889999999999988876554444
No 15
>cd03391 PAP2_containing_2_like PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_2. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to eukaryota, lacks functional characterization and may act as a membrane-associated phosphatidic acid phosphatase.
Probab=95.38 E-value=0.042 Score=47.18 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=44.7
Q ss_pred eecccHHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHH
Q 023099 177 IFSSHMIFTLLFVLTYHKYGTIR-FIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVF 239 (287)
Q Consensus 177 iFSGHt~~l~l~~l~~~~Y~~~~-~~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~~ 239 (287)
+=||||+..+..+.+...+.+++ ......++.++..++--+....||--||+.|..+......
T Consensus 93 FPSGHa~~a~a~a~~l~~~~~~~~~~~~~~~~~a~~v~~SRvylg~H~psDVlaG~~lG~~~~~ 156 (159)
T cd03391 93 FPSGHASRAAFVARFLLNHLVLAVPLRVLLVLWATVVGISRVLLGRHHVLDVLAGAFLGYLEAL 156 (159)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHH
Confidence 56999998766665555554432 2445555667777777888899999999999987765443
No 16
>PLN02731 Putative lipid phosphate phosphatase
Probab=95.02 E-value=0.072 Score=51.35 Aligned_cols=74 Identities=14% Similarity=-0.010 Sum_probs=39.5
Q ss_pred eecccHHHHHHHHHHHHHhcCc---------hHHHHH----HHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHHH-Hh
Q 023099 177 IFSSHMIFTLLFVLTYHKYGTI---------RFIKQS----AWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVFF-IN 242 (287)
Q Consensus 177 iFSGHt~~l~l~~l~~~~Y~~~---------~~~k~i----~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~~~-~~ 242 (287)
+=|||+.+.+.++.+..-|-.. ...|.+ .+++++..++--+.-..||=-||+.|..+...+-++ +.
T Consensus 181 FPSGHSS~sfagl~fLslyL~~kl~~~~~~~~~~rl~l~~lpll~A~lIalSRV~Dy~Hh~sDVlaG~lLG~~iA~~~Y~ 260 (333)
T PLN02731 181 FPSGHTSWSFSGLGFLSLYLSGKIQAFDGKGHVAKLCIVILPLLFAALVGISRVDDYWHHWQDVFAGGLLGLAISTICYL 260 (333)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4599998755444333322211 112322 223333444444455579999999999887554433 33
Q ss_pred hhCCCCCC
Q 023099 243 KKLPELPD 250 (287)
Q Consensus 243 ~~~~~~~~ 250 (287)
.+.|.+-.
T Consensus 261 ~yfp~~~~ 268 (333)
T PLN02731 261 QFFPPPYH 268 (333)
T ss_pred HHcCCccc
Confidence 45555443
No 17
>PLN02250 lipid phosphate phosphatase
Probab=94.99 E-value=0.12 Score=49.55 Aligned_cols=73 Identities=18% Similarity=0.035 Sum_probs=38.7
Q ss_pred eecccHHHHHHHHHHHHHhc--------Cc-hHHHHHHHHHHHHHHHHHHHc----CCcceehhhHHHHHHHHHHHH-Hh
Q 023099 177 IFSSHMIFTLLFVLTYHKYG--------TI-RFIKQSAWLLAIIESLLIIAS----RKHYTVDVVVAWYTVNLVVFF-IN 242 (287)
Q Consensus 177 iFSGHt~~l~l~~l~~~~Y~--------~~-~~~k~i~~ll~~~~~~~il~s----r~HYTVDV~ia~~it~~v~~~-~~ 242 (287)
+-|||+...+.++.+..-|- ++ +..|.+..++.++.++++-+| ..||=.||+.|..+...+.++ +.
T Consensus 163 FPSGHSS~afa~~~fLslyL~~kl~~~~~~~~~~r~~l~~lpll~A~lVa~SRI~dy~Hh~sDVlaG~lIG~~~A~~~y~ 242 (314)
T PLN02250 163 FPSGHTSWSFAGLGFLSLYLSGKIRVFDRRGHVAKLCIVFLPLLVAALVGVSRVDDYWHHWQDVFAGALIGLTVASFCYL 242 (314)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 44999987555444332221 11 112322222233333444444 569999999999887655444 33
Q ss_pred hhCCCCC
Q 023099 243 KKLPELP 249 (287)
Q Consensus 243 ~~~~~~~ 249 (287)
.+.|..-
T Consensus 243 ~~fp~~~ 249 (314)
T PLN02250 243 QFFPPPY 249 (314)
T ss_pred HHcCCcc
Confidence 4455443
No 18
>cd03392 PAP2_like_2 PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=94.84 E-value=0.12 Score=44.72 Aligned_cols=65 Identities=18% Similarity=0.107 Sum_probs=40.9
Q ss_pred ccceeecccHHHHHHHHH----HHHHhcCchH----HHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHH
Q 023099 173 CGDLIFSSHMIFTLLFVL----TYHKYGTIRF----IKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLV 237 (287)
Q Consensus 173 CgDliFSGHt~~l~l~~l----~~~~Y~~~~~----~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v 237 (287)
.|.=+-||||+..+..+. ...++.++++ ...++++..+..++.-+.-..||--||+.|+.+....
T Consensus 99 ~~~sfPSgHa~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sRv~lg~H~~sDvl~G~~lG~~~ 171 (182)
T cd03392 99 GGYSFPSGHAMGATVLYGFLAYLLARRLPRRRVRILLLILAAILILLVGLSRLYLGVHYPSDVLAGWLLGLAW 171 (182)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 344577999987654432 2223333222 2334445566666677778899999999999877654
No 19
>PRK09597 lipid A 1-phosphatase; Reviewed
Probab=94.69 E-value=0.12 Score=46.04 Aligned_cols=63 Identities=19% Similarity=0.051 Sum_probs=39.3
Q ss_pred eecccHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHHHH
Q 023099 177 IFSSHMIFTLLFVLTYH-KYGTIRFIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVFFI 241 (287)
Q Consensus 177 iFSGHt~~l~l~~l~~~-~Y~~~~~~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~~~~ 241 (287)
+-||||+..+..+.++. +|..+.. ++...+.+..+.--+....||--||+.|+.+...+-+++
T Consensus 121 FPSGHt~~af~~a~~l~~~~~~~~~--~~~l~lallVg~SRVYLGvHyPsDVLaG~liGil~~~lf 184 (190)
T PRK09597 121 MPSGHSSMVGLAVAFLMRRYSFKKY--WWLLPLIPLTMLARIYLDMHTIGAVLAGLGVGMLCVSLF 184 (190)
T ss_pred CCcHHHHHHHHHHHHHHHHHchhHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 67999998765444433 4544332 112223334455566667999999999998876554433
No 20
>PRK10699 phosphatidylglycerophosphatase B; Provisional
Probab=94.24 E-value=0.19 Score=46.49 Aligned_cols=63 Identities=21% Similarity=0.084 Sum_probs=35.9
Q ss_pred cce-eecccHHHHHHHHHHHHH-hcCch-H-HHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHH
Q 023099 174 GDL-IFSSHMIFTLLFVLTYHK-YGTIR-F-IKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNL 236 (287)
Q Consensus 174 gDl-iFSGHt~~l~l~~l~~~~-Y~~~~-~-~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~ 236 (287)
+|+ +-||||++....+++... ..+++ . ...+..+.++..++.-+.-..||-.||+.|..+...
T Consensus 155 ~gySFPSGHa~~a~~~~l~~~~ll~~~~~~~~~~~~~~wa~~v~~SRvyLGvH~psDVlaG~llG~~ 221 (244)
T PRK10699 155 TGFAFPSGHTMFAASWALLAVGLLWPRRRYKTVALLMLWATGVMGSRLLLGMHWPRDLVVATLISWL 221 (244)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCHHHHHHHHHHHHH
Confidence 444 889999976543322211 11222 1 112222334445555666789999999999776653
No 21
>cd03388 PAP2_SPPase1 PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second messenger in the cell, and extracellularly by binding to G-protein coupled receptors of the endothelial differentiation gene family.
Probab=94.09 E-value=0.14 Score=43.31 Aligned_cols=60 Identities=18% Similarity=0.050 Sum_probs=36.7
Q ss_pred eecccHHHHHHHHHHHHHhcCch------HHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHH
Q 023099 177 IFSSHMIFTLLFVLTYHKYGTIR------FIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNL 236 (287)
Q Consensus 177 iFSGHt~~l~l~~l~~~~Y~~~~------~~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~ 236 (287)
+=||||+..+..+..+..+..++ ......++.++..++--+.-..||-.||+.|..+...
T Consensus 80 FPSgH~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~SRvylgvH~p~DVl~G~~lG~~ 145 (151)
T cd03388 80 FPSTHAMNATAISFYLLIYLYDRYQYPFVLGLILALFYSTLVCLSRIYMGMHSVLDVIAGSLIGVL 145 (151)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 56999987665555443332221 1223334444555555566679999999999987654
No 22
>PRK11837 undecaprenyl pyrophosphate phosphatase; Provisional
Probab=93.95 E-value=0.16 Score=45.37 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=42.3
Q ss_pred eeecccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHH
Q 023099 176 LIFSSHMIFTLLFVLTYHKYGTIRFIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVF 239 (287)
Q Consensus 176 liFSGHt~~l~l~~l~~~~Y~~~~~~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~~ 239 (287)
=+=||||+.....++.+.-.. +++...+.++.++..++--+....||--||+.|+.+......
T Consensus 104 SFPSgHa~~~~~~a~~~l~~~-~~~~~~~~~~~a~lva~SRVylGvHypsDVlgG~~lG~~~~~ 166 (202)
T PRK11837 104 SFPSDHGTVIFTFALAFLFWH-RLWSGSLLMAIAVAIAWSRVYLGVHWPLDMLGALLVGMIGCL 166 (202)
T ss_pred CCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 346999987666544332222 223445666667777777888889999999999887765443
No 23
>cd03390 PAP2_containing_1_like PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_1. Most likely membrane-associated phosphatidic acid phosphatases. Plant members of this group are constitutively expressed in many tissues and exhibit both diacylglycerol pyrophosphate phosphatase activity as well as phosphatidate (PA) phosphatase activity, they may have a more generic housekeeping role in lipid metabolism.
Probab=93.91 E-value=0.13 Score=45.24 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=38.2
Q ss_pred eecccHHHHHHHHHHHHHh--------cCc-hHHH----HHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHHH
Q 023099 177 IFSSHMIFTLLFVLTYHKY--------GTI-RFIK----QSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVFF 240 (287)
Q Consensus 177 iFSGHt~~l~l~~l~~~~Y--------~~~-~~~k----~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~~~ 240 (287)
+-|||++..+..+.+...| .++ +..+ .+..++++..++.-+.-..||--||+.|..+...+-+.
T Consensus 112 FPSGHas~a~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~SRi~~g~H~~sDVlaG~~lG~~~a~~ 188 (193)
T cd03390 112 FPSGHSSFAFAGLGFLSLYLAGKLHIFDPRGSSWRLLLALLPLLLAILVAVSRTRDYRHHFSDVIAGSLIGLIIAYL 188 (193)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHh
Confidence 6799998765433332211 111 1222 23334455556666777889999999999887655443
No 24
>PLN02715 lipid phosphate phosphatase
Probab=93.70 E-value=0.27 Score=47.34 Aligned_cols=68 Identities=18% Similarity=0.103 Sum_probs=37.1
Q ss_pred eecccHHHHHHHHHHHHHhcCch---------HHHHHHHHHHHHHHHHHHHc----CCcceehhhHHHHHHHHHHHHHhh
Q 023099 177 IFSSHMIFTLLFVLTYHKYGTIR---------FIKQSAWLLAIIESLLIIAS----RKHYTVDVVVAWYTVNLVVFFINK 243 (287)
Q Consensus 177 iFSGHt~~l~l~~l~~~~Y~~~~---------~~k~i~~ll~~~~~~~il~s----r~HYTVDV~ia~~it~~v~~~~~~ 243 (287)
+=|||+.+.+..+.+..-|-..+ ..|.+..++.++.++++-+| ..||--||+.|..+...+.++.++
T Consensus 187 FPSGHSS~sfagl~~Lsl~L~~kl~~~~~~~~~~k~~l~~lpll~A~lIalSRv~Dy~Hh~sDVlaG~lLG~~~a~~~y~ 266 (327)
T PLN02715 187 FPSGHTSWSFAGLTFLSLYLSGKIKAFNGEGHVAKLCLVIFPLLAACLVGISRVDDYWHHWQDVFAGALIGILVAAFCYR 266 (327)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34999986555444433221111 12322222333344444444 469999999999887665544444
Q ss_pred h
Q 023099 244 K 244 (287)
Q Consensus 244 ~ 244 (287)
.
T Consensus 267 ~ 267 (327)
T PLN02715 267 Q 267 (327)
T ss_pred H
Confidence 3
No 25
>cd03397 PAP2_acid_phosphatase PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases. These enzymes catalyze phosphomonoester hydrolysis, with optimal activity in low pH conditions. They are secreted into the periplasmic space, and their physiological role remains to be determined.
Probab=93.68 E-value=0.17 Score=46.05 Aligned_cols=62 Identities=16% Similarity=-0.008 Sum_probs=45.0
Q ss_pred eeecccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHH
Q 023099 176 LIFSSHMIFTLLFVLTYHKYGTIRFIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVF 239 (287)
Q Consensus 176 liFSGHt~~l~l~~l~~~~Y~~~~~~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~~ 239 (287)
=+-||||+......+.+.++.|++...++.+ ....+.--+....||--||+.|..+...+.-
T Consensus 151 SfPSGHa~~a~a~a~~La~~~p~~~~~l~~~--a~~~g~SRv~~GvH~psDV~aG~~lG~~~~a 212 (232)
T cd03397 151 SYPSGHTAAGYAWALILAELVPERADEILAR--GSEYGQSRIVCGVHWPSDVMGGRIMAAALVA 212 (232)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCcCHHHHHHHHHHHHHHHH
Confidence 3689999988777777777767665443333 3344555777889999999999988876543
No 26
>cd03384 PAP2_wunen PAP2, wunen subfamily. Most likely a family of membrane associated phosphatidic acid phosphatases. Wunen is a drosophila protein expressed in the central nervous system, which provides repellent activity towards primordial germ cells (PGCs), controls the survival of PGCs and is essential in the migration process of these cells towards the somatic gonadal precursors.
Probab=93.51 E-value=0.17 Score=42.94 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=35.4
Q ss_pred eecccHHHHHHHHHHHHHh-----cCc--hHHHHHH----HHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHH
Q 023099 177 IFSSHMIFTLLFVLTYHKY-----GTI--RFIKQSA----WLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVF 239 (287)
Q Consensus 177 iFSGHt~~l~l~~l~~~~Y-----~~~--~~~k~i~----~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~~ 239 (287)
+-|||+...+..+.+..-| ..+ +..+.+. .+.++..++--+.-+.||--||+.|..+...+-+
T Consensus 74 FPSGHs~~a~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~~a~~v~~sRv~~~~H~~sDviaG~~lG~~~~~ 147 (150)
T cd03384 74 FPSGHASLSMYAAVFLALYLQARLKLRGSRLLRPLLQFLLLALALYVGLSRISDYKHHWSDVLAGALLGSVIAL 147 (150)
T ss_pred CCcHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhHhhhccCCCCHHHHHHHHHHHHHHHH
Confidence 4599998765433332211 211 1123322 2333444444555667999999999988765543
No 27
>cd03381 PAP2_glucose_6_phosphatase PAP2_like proteins, glucose-6-phosphatase subfamily. Glucose-6-phosphatase converts glucose-6-phosphate into free glucose and is active in the lumen of the endoplasmic reticulum, where it is bound to the membrane. The generation of free glucose is an important control point in metabolism, and stands at the end of gluconeogenesis and the release of glucose from glycogen. Deficiency of glucose-6-phosphatase leads to von Gierke's disease.
Probab=92.98 E-value=0.31 Score=44.81 Aligned_cols=63 Identities=22% Similarity=0.203 Sum_probs=36.4
Q ss_pred cceeecccHHHHHHHHHHHH----HhcC----chHHHHHHHHHHHHHHHHHHHcC----CcceehhhHHHHHHHH
Q 023099 174 GDLIFSSHMIFTLLFVLTYH----KYGT----IRFIKQSAWLLAIIESLLIIASR----KHYTVDVVVAWYTVNL 236 (287)
Q Consensus 174 gDliFSGHt~~l~l~~l~~~----~Y~~----~~~~k~i~~ll~~~~~~~il~sr----~HYTVDV~ia~~it~~ 236 (287)
|.=+=|||++..+.....+. .+.. +++.+...|++.....+++-.|| .||--||+.|..+...
T Consensus 71 gysfPSGHam~a~a~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~V~~SRvYLgvHfpsDVlaG~~lGi~ 145 (235)
T cd03381 71 GPGSPSGHAMGTTAVLLVMVTALLSHLAGRKRSRFLRVMLWLVFWGVQLAVCLSRIYLAAHFPHQVIAGVISGIA 145 (235)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 45578999976544332221 1111 22344445554444444454555 8999999999877644
No 28
>cd03396 PAP2_like_6 PAP2_like_6 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which mainly contains bacterial proteins, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=92.72 E-value=0.45 Score=41.97 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=42.3
Q ss_pred ccceeecccHHHHHHHH--HH-HHHhcCc--hHHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHHHHh
Q 023099 173 CGDLIFSSHMIFTLLFV--LT-YHKYGTI--RFIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVFFIN 242 (287)
Q Consensus 173 CgDliFSGHt~~l~l~~--l~-~~~Y~~~--~~~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~~~~~ 242 (287)
.|.=+-||||+..+..+ .+ ..++.++ +..-.+..++.+..+..-+....||--||+.|..+...+....+
T Consensus 120 ~~~SFPSGHas~af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~sRi~~G~Hf~SDvl~g~~ig~~~~~~~~ 194 (197)
T cd03396 120 KGCSFPSGHASAGFALLALYFLFRRRRPRLARLVLAAGLALGALMGLARMARGAHFLSDVLWSLLLVWLIALLLY 194 (197)
T ss_pred CCCcCCchhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 34458899998644322 22 2222221 11122333445556666777889999999999998877655544
No 29
>cd03380 PAP2_like_1 PAP2_like_1 proteins, a sub-family of PAP2, containing bacterial acid phosphatase, vanadium chloroperoxidases and vanadium bromoperoxidases.
Probab=92.59 E-value=0.22 Score=44.20 Aligned_cols=60 Identities=15% Similarity=-0.005 Sum_probs=44.8
Q ss_pred eecccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHH
Q 023099 177 IFSSHMIFTLLFVLTYHKYGTIRFIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVV 238 (287)
Q Consensus 177 iFSGHt~~l~l~~l~~~~Y~~~~~~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~ 238 (287)
+-||||++....+.++.++.++++..+. ........--+....||--||+.|..+...+.
T Consensus 145 fPSGHa~~a~a~a~~l~~~~~~~~~~~~--~~a~~~~~SRv~~G~H~~sDv~aG~~lG~~i~ 204 (209)
T cd03380 145 YPSGHATFGGAAALVLAELFPERAAELL--ARAAEAGNSRVVAGVHWPSDVEAGRILGEAIA 204 (209)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhCCeecHHHHHHHHHHHHHHH
Confidence 4699999988888888777776653332 34455556677889999999999998876543
No 30
>KOG3030 consensus Lipid phosphate phosphatase and related enzymes of the PAP2 family [Lipid transport and metabolism]
Probab=90.49 E-value=1.5 Score=42.09 Aligned_cols=69 Identities=20% Similarity=0.258 Sum_probs=42.0
Q ss_pred eecccHHHHHHHHHHHHHhcCch--------HHHHHHHHH----HHHHHHHHHHcCCcceehhhHHHHHHHHHHHHHhhh
Q 023099 177 IFSSHMIFTLLFVLTYHKYGTIR--------FIKQSAWLL----AIIESLLIIASRKHYTVDVVVAWYTVNLVVFFINKK 244 (287)
Q Consensus 177 iFSGHt~~l~l~~l~~~~Y~~~~--------~~k~i~~ll----~~~~~~~il~sr~HYTVDV~ia~~it~~v~~~~~~~ 244 (287)
+.|||+.+..-++.+..-|...+ ..|.+...+ ++..++--+...+|-=.||+.|..+...+-++.+..
T Consensus 181 FPSGHsS~s~y~~~flalyl~~~~~~~~~~rllr~~l~f~~l~~A~~v~lSRV~DYkHHwsDV~aG~liG~~~A~~~~~~ 260 (317)
T KOG3030|consen 181 FPSGHSSFSFYAMGFLALYLQARLFWFGRGRLLRPLLQFLPLMLALLVGLSRVSDYKHHWSDVLAGALIGAFVAYFLYRY 260 (317)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHeeehhcccccccHHHHHHHHHHHHHHHHHHhh
Confidence 68999998777777766444322 123222222 333333445556899999999988877655544444
Q ss_pred C
Q 023099 245 L 245 (287)
Q Consensus 245 ~ 245 (287)
+
T Consensus 261 v 261 (317)
T KOG3030|consen 261 V 261 (317)
T ss_pred h
Confidence 4
No 31
>PLN02525 phosphatidic acid phosphatase family protein
Probab=90.00 E-value=0.84 Score=44.38 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=35.4
Q ss_pred eecccHHHHHHHHHHHHHh----cC---chH-H--HHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHH
Q 023099 177 IFSSHMIFTLLFVLTYHKY----GT---IRF-I--KQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLV 237 (287)
Q Consensus 177 iFSGHt~~l~l~~l~~~~Y----~~---~~~-~--k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v 237 (287)
+-||||+..+....++..| .+ ++. . -.+.+++.+..++--+--..||-.||+.|..+...+
T Consensus 86 FPSgHt~nA~av~~~ll~~l~~~~~~~~~~~~~~~~~l~~l~allV~~SRlYLGvH~psDVl~G~~lG~~i 156 (352)
T PLN02525 86 LPSSHTLNTVCLSGYLLHYVLSYLQNVDASVIFAGLALFCLLVALVGFGRLYLGMHSPIDIIAGLAIGLVI 156 (352)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHheeccCHHHHHHHHHHHHHH
Confidence 6799998765544322222 11 111 1 122333444555555566799999999999877654
No 32
>cd03382 PAP2_dolichyldiphosphatase PAP2_like proteins, dolichyldiphosphatase subfamily. Dolichyldiphosphatase is a membrane-associated protein located in the endoplasmic reticulum and hydrolyzes dolichyl pyrophosphate, as well as dolichylmonophosphate at a low rate. The enzyme is necessary for maintaining proper levels of dolichol-linked oligosaccharides and protein N-glycosylation, and might play a role in re-utilization of the glycosyl carrier lipid for additional rounds of lipid intermediate biosynthesis after its release during protein N-glycosylation reactions.
Probab=89.41 E-value=1.2 Score=38.11 Aligned_cols=30 Identities=27% Similarity=0.153 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCcceehhhHHHHHHHHH
Q 023099 208 LAIIESLLIIASRKHYTVDVVVAWYTVNLV 237 (287)
Q Consensus 208 l~~~~~~~il~sr~HYTVDV~ia~~it~~v 237 (287)
.++..+.--+.-..||=-||+.|+.+...+
T Consensus 125 ~~~~v~~SRvylg~H~~~DVl~G~~lG~~~ 154 (159)
T cd03382 125 LALLVSYSRVYLGYHTVSQVVVGAIVGILL 154 (159)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 344444555556799999999999877643
No 33
>cd03398 PAP2_haloperoxidase PAP2, haloperoxidase_like subfamily. Haloperoxidases catalyze the oxidation of halides such as bromide or chloride by hydrogen peroxide, which results in subsequent halogenation of organic substrates, or halide-assisted disproportionation of hydrogen peroxide forming dioxygen. They are likely to participate in the biosynthesis of halogenated natural products, such as volatile halogenated hydrocarbons, chiral halogenated terpenes, acetogenins and indoles.
Probab=75.09 E-value=7.6 Score=35.16 Aligned_cols=62 Identities=11% Similarity=-0.107 Sum_probs=40.6
Q ss_pred eecccHHHHHHHHHHHHHhcCchH-------------------HHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHH
Q 023099 177 IFSSHMIFTLLFVLTYHKYGTIRF-------------------IKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLV 237 (287)
Q Consensus 177 iFSGHt~~l~l~~l~~~~Y~~~~~-------------------~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v 237 (287)
.=|||+++...++..+..+-+++. .......++.....--+..-.||-.||..|..+...+
T Consensus 147 yPSGHa~~a~a~a~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~SRvy~GvH~~sDv~~G~~lG~~v 226 (232)
T cd03398 147 YPSGHATFAGAAATVLKALFGSDKVPDTVSEPDEGGPSTGVTRVWAELNELADEVAISRVYAGVHFRSDDAAGAALGEQI 226 (232)
T ss_pred CccHHHHHHHHHHHHHHHHhCCCCCCCCccccccCCCCCCCcccHhHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHH
Confidence 459999988777777765544321 0111222444455566778899999999999877654
Q ss_pred H
Q 023099 238 V 238 (287)
Q Consensus 238 ~ 238 (287)
.
T Consensus 227 a 227 (232)
T cd03398 227 G 227 (232)
T ss_pred H
Confidence 3
No 34
>KOG4268 consensus Uncharacterized conserved protein containing PAP2 domain [Function unknown]
Probab=70.05 E-value=14 Score=32.34 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHcCCcceehhhHHHHHHHH
Q 023099 205 AWLLAIIESLLIIASRKHYTVDVVVAWYTVNL 236 (287)
Q Consensus 205 ~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~ 236 (287)
.|+-+.....--++=..||--||..|.++..+
T Consensus 140 ~~~walvvglSRv~lGRHyvtDVlaG~fiGyl 171 (189)
T KOG4268|consen 140 LVLWALVVGLSRVMLGRHYVTDVLAGFFIGYL 171 (189)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33333333444455557999999999998864
No 35
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=43.26 E-value=31 Score=25.91 Aligned_cols=38 Identities=8% Similarity=0.034 Sum_probs=29.3
Q ss_pred cchHHHHhhcccc-cccchhhHHHHHHHHHHHHHHHHHh
Q 023099 8 EAPKLWRKICSET-TIEISLLAENWKIILGGIIFQYIHG 45 (287)
Q Consensus 8 ~~~~~~~~i~~~~-~~e~~~~~~~wKt~l~~~~~~~~~~ 45 (287)
...++++..++|. |++||-.+|-++..+..+.+..+..
T Consensus 19 ~~~~f~~~~~~E~~KV~WPsrke~~~~t~~Vl~~v~~~s 57 (73)
T COG0690 19 KFFNFFKEVRKELKKVVWPTRKELIRSTLIVLVVVAFFS 57 (73)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 3457888899998 8999999999988876665554443
No 36
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=39.96 E-value=32 Score=24.10 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=27.9
Q ss_pred hHHHHhhcccc-cccchhhHHHHHHHHHHHHHHHHHhhc
Q 023099 10 PKLWRKICSET-TIEISLLAENWKIILGGIIFQYIHGLA 47 (287)
Q Consensus 10 ~~~~~~i~~~~-~~e~~~~~~~wKt~l~~~~~~~~~~~~ 47 (287)
.++++.+.+|. +++||-.+|.++.....+.+..+.++.
T Consensus 3 ~~f~~~~~~Elkkv~WP~~~e~~~~t~~Vl~~~~i~~~~ 41 (57)
T PF00584_consen 3 KNFFREVKKELKKVTWPSRKELLKSTIIVLVFVIIFGLF 41 (57)
T ss_dssp HHHHHCHHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777776 789999999998888777666655543
No 37
>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial. This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.
Probab=35.33 E-value=53 Score=23.05 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=26.5
Q ss_pred HHHHhhcccc-cccchhhHHHHHHHHHHHHHHHHHhh
Q 023099 11 KLWRKICSET-TIEISLLAENWKIILGGIIFQYIHGL 46 (287)
Q Consensus 11 ~~~~~i~~~~-~~e~~~~~~~wKt~l~~~~~~~~~~~ 46 (287)
++.+.+.+|. ++.||=.+|.++..+..+.+..+.++
T Consensus 3 ~f~~~~~~ElkkV~WPt~~e~~~~t~~Vi~~~~~~~~ 39 (55)
T TIGR00964 3 KFFKEVKAELKKVVWPSRKELITYTIVVIVFVIFFSL 39 (55)
T ss_pred hHHHHHHHHHhcCcCcCHHHHHhHHHHHHHHHHHHHH
Confidence 4667777777 78999999999887766665555443
No 38
>PRK07597 secE preprotein translocase subunit SecE; Reviewed
Probab=34.01 E-value=57 Score=23.51 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=29.0
Q ss_pred chHHHHhhcccc-cccchhhHHHHHHHHHHHHHHHHHhh
Q 023099 9 APKLWRKICSET-TIEISLLAENWKIILGGIIFQYIHGL 46 (287)
Q Consensus 9 ~~~~~~~i~~~~-~~e~~~~~~~wKt~l~~~~~~~~~~~ 46 (287)
..++++.+.+|. ++.||=.+|.++..+..+.+..+.++
T Consensus 10 ~~~f~~~~~~ElkkV~WPs~~e~~~~t~~Vi~~~~~~~~ 48 (64)
T PRK07597 10 LKKFFKDVKAELKKVTWPTRKELVRSTIVVLVFVAFFAL 48 (64)
T ss_pred HHHHHHHHHHHHhhCcCcCHHHHHhHHHHHHHHHHHHHH
Confidence 456788888887 79999999999887776666655544
No 39
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=26.81 E-value=2.4e+02 Score=28.00 Aligned_cols=100 Identities=12% Similarity=0.065 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccceeEEeecC--CCCCCcccccccCCCCCchhhHHHHHHHHHHHH-HHHHhhcccccccC
Q 023099 28 AENWKIILGGIIFQYIHGLAAHAVHYLHQP--GPLLQDSGYALIPELGEDKAYISETLFSFLFFS-FVLWTFHPFVFQSK 104 (287)
Q Consensus 28 ~~~wKt~l~~~~~~~~~~~~~~~~~y~h~p--~~pLpDi~f~~~p~i~~~~~~vse~l~~~~~~~-~vl~~~~~~~~~~~ 104 (287)
++.|+.+...-++.+...++-.......++ +.-+.|.++|-.+...... .-+-.+..+ .++ .++.+++-+++-+.
T Consensus 16 ~~vi~lf~PVslCM~~Vv~~i~~~~~~s~~~~~~~~y~pf~e~t~s~~~k~-l~sl~N~li-~i~viv~~Tfllv~ly~~ 93 (406)
T KOG2736|consen 16 KHVIGLFVPVSLCMLVVVATIKSVSFYSSEQGRQLIYTPFTEDTDSTGQKL-LDSLLNALI-MISVIVVMTFLLVVLYKY 93 (406)
T ss_pred eEEEEEehhHHHHHHHHHHhheecceeecccchheeecccccCCccHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 456666766666666666666555545544 3677777777443333321 111111111 111 12223333456677
Q ss_pred chhHHH-HHHH-----HHHHHHHHHHHhhhh
Q 023099 105 SFHTVL-LWCR-----VLACLVVCQMLRIVT 129 (287)
Q Consensus 105 R~~~~i-i~rR-----~~~~~~~~yllR~it 129 (287)
|+|+.+ .|.+ .++.++..|+-+.+-
T Consensus 94 rfyk~ik~wl~~Ss~llLf~~s~~~l~~v~~ 124 (406)
T KOG2736|consen 94 RFYKFIKAWLILSSLLLLFLFSGIYLGEVFK 124 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877666 2222 233445555555554
No 40
>KOG3146 consensus Dolichyl pyrophosphate phosphatase and related acid phosphatases [Lipid transport and metabolism]
Probab=25.67 E-value=63 Score=29.57 Aligned_cols=67 Identities=19% Similarity=0.041 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHH---HHHHHhhhCCCCCCCCCCCCccccccccccCCCCCc
Q 023099 203 QSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNL---VVFFINKKLPELPDRSNASASLQFLPVSSRDKDGRN 272 (287)
Q Consensus 203 ~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~---v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~k~~~~ 272 (287)
.+.|.++...+..-+.-+.||+--|+.|..+..+ .||++-+.+ .-+--+|..++|...+.- .||+-+
T Consensus 134 ~~~laLs~~v~~sRVyl~yHt~sQVv~G~ivG~l~g~~Wf~~v~sl--ll~~f~~~l~~~i~~ffy-i~dt~~ 203 (228)
T KOG3146|consen 134 GLLLALSFYVCYSRVYLKYHTLSQVVVGAIVGGLVGILWFYLVNSL--LLGLFPWILSLPISRFFY-IKDTSL 203 (228)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhHHHHHHHHHHHH--HHHHHHHHHHhhHHHhhh-hhcccc
Confidence 4556677777788888999999999999977654 566666665 223334566666666653 455543
No 41
>KOG2822 consensus Sphingoid base-phosphate phosphatase [Lipid transport and metabolism]
Probab=23.88 E-value=1.4e+02 Score=29.62 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=42.6
Q ss_pred eecccHHHHHHHHHH----HHHhcCchHH-HHHH----HHHHHHHHHHHHHcCCcceehhhHHHHHHHHHH---HHHhhh
Q 023099 177 IFSSHMIFTLLFVLT----YHKYGTIRFI-KQSA----WLLAIIESLLIIASRKHYTVDVVVAWYTVNLVV---FFINKK 244 (287)
Q Consensus 177 iFSGHt~~l~l~~l~----~~~Y~~~~~~-k~i~----~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~---~~~~~~ 244 (287)
+=|.||+..+-..+. +..+.+..+. .+.. .++.+..++--+-.-.|=-+|++.|..++.+++ +.+.+.
T Consensus 159 ~PStHt~natais~~~~~~ls~~d~~s~p~~~lgl~lv~~y~~lv~lgRiY~GMHgvlDi~sG~ligvl~~~~~~~~~~~ 238 (407)
T KOG2822|consen 159 MPSTHTMNATAISFYFFLVLSTMDRESYPIQYLGLSLVLLYYALVCLGRIYCGMHGVLDIVSGLLIGVLILILRYPFVDF 238 (407)
T ss_pred CCcchhhhhhHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHhhhHHHHHHhhhhhhHHHh
Confidence 348898864433322 2233332231 2222 234445555566666899999999998887654 445566
Q ss_pred CCCCCC
Q 023099 245 LPELPD 250 (287)
Q Consensus 245 ~~~~~~ 250 (287)
+++...
T Consensus 239 ~dnf~~ 244 (407)
T KOG2822|consen 239 IDNFIS 244 (407)
T ss_pred ccchhh
Confidence 666553
No 42
>PRK05740 secE preprotein translocase subunit SecE; Reviewed
Probab=23.66 E-value=92 Score=24.38 Aligned_cols=40 Identities=13% Similarity=0.028 Sum_probs=29.0
Q ss_pred ccchHHHHhhcccc-cccchhhHHHHHHHHHHHHHHHHHhh
Q 023099 7 REAPKLWRKICSET-TIEISLLAENWKIILGGIIFQYIHGL 46 (287)
Q Consensus 7 ~~~~~~~~~i~~~~-~~e~~~~~~~wKt~l~~~~~~~~~~~ 46 (287)
++..++.+...+|. |+.||=.+|.++..+..+.+..+.++
T Consensus 34 ~~~~~F~k~v~~ElkKV~WPtr~e~~~~t~~Viv~~~i~~l 74 (92)
T PRK05740 34 KAFFAFAKESRTEVRKVVWPTRQETLQTTLIVIAVVIVMAL 74 (92)
T ss_pred HHHHHHHHHHHHHhhhccCcCHHHHHhHHHHHhhHHHHHHH
Confidence 34456777777777 78899999999888776666555543
No 43
>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane
Probab=23.27 E-value=4e+02 Score=23.60 Aligned_cols=64 Identities=25% Similarity=0.299 Sum_probs=38.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHcCCcceehhhHHHHHHHHHHHHHh-hhCCCCCCCCCCCCccccccc
Q 023099 200 FIKQSAWL-LAIIESLLIIASRKHYTVDVVVAWYTVNLVVFFIN-KKLPELPDRSNASASLQFLPV 263 (287)
Q Consensus 200 ~~k~i~~l-l~~~~~~~il~sr~HYTVDV~ia~~it~~v~~~~~-~~~~~~~~r~~~~~~~~~~~~ 263 (287)
..+|+..+ +.++-++-+...+.+|-|.=.+|.|+-++.--++- +.-|+..+.+.....-|.||.
T Consensus 25 ~~RW~~~~~L~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FltP~~Dp~l~~~~~~~~~g~~Lp~ 90 (176)
T PF03248_consen 25 KYRWIAFLVLLFLFLLRVYYLQGWYIVTYALGIYLLNLFIAFLTPKFDPELEQDEEDEEEGPELPT 90 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeeehHHHHHHHHHHHHHHhCCcCccccccccccccccccCCC
Confidence 34454433 44455567788899999999999998886543333 333444433322222245665
No 44
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=21.54 E-value=37 Score=31.26 Aligned_cols=10 Identities=30% Similarity=0.401 Sum_probs=9.1
Q ss_pred ccceeecccH
Q 023099 173 CGDLIFSSHM 182 (287)
Q Consensus 173 CgDliFSGHt 182 (287)
..||++||||
T Consensus 202 ~~dL~lsGHT 211 (271)
T PRK11340 202 PWDLMLCGHT 211 (271)
T ss_pred CCCEEEeccc
Confidence 5799999999
Done!