Query 023099
Match_columns 287
No_of_seqs 159 out of 275
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 16:20:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ipb_A PHON protein, class A n 95.4 0.034 1.2E-06 48.9 7.2 62 177-240 134-195 (230)
2 1d2t_A Acid phosphatase; all a 94.8 0.068 2.3E-06 47.0 7.4 64 176-241 145-208 (231)
3 1up8_A Vanadium-dependent brom 63.3 16 0.00054 36.7 7.4 68 178-245 484-576 (598)
4 1qi9_A Protein (vanadium bromo 51.4 30 0.001 34.4 7.0 37 208-244 472-508 (556)
5 2zjs_E Preprotein translocase 24.3 43 0.0015 23.0 2.3 37 10-46 6-43 (60)
6 3dl8_C SECE; RECA-type ATPase 19.1 48 0.0016 23.2 1.6 37 10-46 5-42 (65)
7 3bb0_A Vanadium chloroperoxida 17.8 43 0.0015 33.7 1.5 29 207-235 481-509 (609)
8 2lfw_B NEPR anti sigma factor; 9.1 1.4E+02 0.0048 21.0 1.6 18 58-75 41-58 (62)
9 3din_D Preprotein translocase 8.8 43 0.0015 23.4 -1.2 35 11-45 6-41 (65)
10 3j01_B Preprotein translocase 8.4 61 0.0021 25.4 -0.6 38 8-45 56-94 (116)
No 1
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=95.39 E-value=0.034 Score=48.89 Aligned_cols=62 Identities=15% Similarity=0.017 Sum_probs=45.3
Q ss_pred eecccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHHH
Q 023099 177 IFSSHMIFTLLFVLTYHKYGTIRFIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVFF 240 (287)
Q Consensus 177 iFSGHt~~l~l~~l~~~~Y~~~~~~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~~~ 240 (287)
+-||||+..+..+.++..+.+++.... ++.+...++--+....||--||+.|..+...+...
T Consensus 134 FPSGHa~~a~a~a~~l~~~~~~~~~~~--~~~a~~v~~SRv~~G~H~~sDVlaG~~lG~~~~~~ 195 (230)
T 2ipb_A 134 YPSGHDAYSTLLALVLSQARPERAQEL--ARRGWEFGQSRVICGAHWQSDVDAGRYVGAVEFAR 195 (230)
T ss_dssp SSCHHHHHHHHHHHHHHHHCGGGHHHH--HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH
Confidence 679999987777777766667654322 33455666677888899999999999888765543
No 2
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=94.80 E-value=0.068 Score=47.01 Aligned_cols=64 Identities=16% Similarity=-0.018 Sum_probs=45.6
Q ss_pred eeecccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHHHH
Q 023099 176 LIFSSHMIFTLLFVLTYHKYGTIRFIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVFFI 241 (287)
Q Consensus 176 liFSGHt~~l~l~~l~~~~Y~~~~~~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~it~~v~~~~ 241 (287)
=+-||||+..+..+.++..+.+++... ....+...++--+....||--||+.|..+...+...+
T Consensus 145 SFPSGHa~~a~a~a~~l~~~~~~~~~~--~~~~a~~v~~SRvylGvH~psDVlaG~~lG~~~~~~~ 208 (231)
T 1d2t_A 145 SYPSGHTSIGWATALVLAEINPQRQNE--ILKRGYELGQSRVICGYHWQSDVDAARVVGSAVVATL 208 (231)
T ss_dssp CSSCHHHHHHHHHHHHHHHHCGGGHHH--HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 367999998777766666666655332 2334556666778889999999999998887655433
No 3
>1up8_A Vanadium-dependent bromoperoxidase 1; haloperoxidase, vanadate; 2.20A {Corallina pilulifera} SCOP: a.111.1.2 PDB: 1qhb_A
Probab=63.33 E-value=16 Score=36.69 Aligned_cols=68 Identities=15% Similarity=-0.036 Sum_probs=45.8
Q ss_pred ecccHHHHHHHHHHHHHhcCchH-------------------------HHHHHHHHHHHHHHHHHHcCCcceehhhHHHH
Q 023099 178 FSSHMIFTLLFVLTYHKYGTIRF-------------------------IKQSAWLLAIIESLLIIASRKHYTVDVVVAWY 232 (287)
Q Consensus 178 FSGHt~~l~l~~l~~~~Y~~~~~-------------------------~k~i~~ll~~~~~~~il~sr~HYTVDV~ia~~ 232 (287)
=|||+++...++..+..+-+.+. +......++...++--+..-.||--||..|+.
T Consensus 484 PSGHAt~S~A~A~vL~~lf~~~~~~~~~~~~~~~G~~R~~p~~g~~ltv~~sl~~lA~eig~SRVYlGVHypSDVlAG~~ 563 (598)
T 1up8_A 484 GSGHAVVAGACVTILKAFFDSGIEIDQVFEVDKDEDKLVKSSFKGTLTVAGELNKLADNIAIGRNMAGVHYFSDQFESLL 563 (598)
T ss_dssp SCHHHHHHHHHHHHHHHHBTTTCBCSCCEEECSSSSSEEECCCCSCCBHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccccccccccccccCcccccccccccchhHHHHHHHHHHHHHHHhheeeeecHHHHHHHHH
Confidence 49999987777777766544331 01123345555666677888999999999998
Q ss_pred HHHHHHHHHhhhC
Q 023099 233 TVNLVVFFINKKL 245 (287)
Q Consensus 233 it~~v~~~~~~~~ 245 (287)
+...+..++.+..
T Consensus 564 LG~aVa~~vl~~~ 576 (598)
T 1up8_A 564 LGEQVAIGILEEQ 576 (598)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877665554443
No 4
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Probab=51.43 E-value=30 Score=34.44 Aligned_cols=37 Identities=14% Similarity=0.032 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCcceehhhHHHHHHHHHHHHHhhh
Q 023099 208 LAIIESLLIIASRKHYTVDVVVAWYTVNLVVFFINKK 244 (287)
Q Consensus 208 l~~~~~~~il~sr~HYTVDV~ia~~it~~v~~~~~~~ 244 (287)
++...++--+....||--||+.|+.+...+...+.+.
T Consensus 472 lA~lIg~SRVYlGVHYPSDVlaG~lLG~~va~~vl~~ 508 (556)
T 1qi9_A 472 LAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLHQ 508 (556)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHeeCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677888999999999998887666555443
No 5
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=24.25 E-value=43 Score=22.95 Aligned_cols=37 Identities=5% Similarity=0.021 Sum_probs=23.5
Q ss_pred hHHHHhhcccc-cccchhhHHHHHHHHHHHHHHHHHhh
Q 023099 10 PKLWRKICSET-TIEISLLAENWKIILGGIIFQYIHGL 46 (287)
Q Consensus 10 ~~~~~~i~~~~-~~e~~~~~~~wKt~l~~~~~~~~~~~ 46 (287)
.++.+..++|. |+.||=.+|.++..+..+.+..+.++
T Consensus 6 ~~f~~~v~~ElkKV~WPtr~e~~~~t~vViv~v~i~~~ 43 (60)
T 2zjs_E 6 IRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMV 43 (60)
T ss_dssp ------CCCCCCCCCCSCSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 45677777776 78999999999888776666555443
No 6
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=19.08 E-value=48 Score=23.15 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=9.0
Q ss_pred hHHHHhhcccc-cccchhhHHHHHHHHHHHHHHHHHhh
Q 023099 10 PKLWRKICSET-TIEISLLAENWKIILGGIIFQYIHGL 46 (287)
Q Consensus 10 ~~~~~~i~~~~-~~e~~~~~~~wKt~l~~~~~~~~~~~ 46 (287)
.++.|...+|. |+.||=.+|.++..+..+.+..+.++
T Consensus 5 ~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~v~i~~~ 42 (65)
T 3dl8_C 5 KEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGV 42 (65)
T ss_dssp -----------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666 78899999999877766665555443
No 7
>3bb0_A Vanadium chloroperoxidase; protein phosphate-intermediate complex, phospatase activity, chloride, metal-binding, oxidoreductase, secreted; 1.50A {Curvularia inaequalis} PDB: 1vns_A 1vnc_A 1vni_A 1idq_A 1vne_A 1vnf_A 1idu_A 1vng_A 1vnh_A
Probab=17.81 E-value=43 Score=33.66 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCcceehhhHHHHHHH
Q 023099 207 LLAIIESLLIIASRKHYTVDVVVAWYTVN 235 (287)
Q Consensus 207 ll~~~~~~~il~sr~HYTVDV~ia~~it~ 235 (287)
.++...++--+..-.||--||..|..+..
T Consensus 481 ~~A~e~g~SRIY~GVHypsDv~aG~~lG~ 509 (609)
T 3bb0_A 481 ELMFENAISRIFLGVHWRFDAAAARDILI 509 (609)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHSCHHHHBC
T ss_pred HHHHHHhhhhheeeeeCHHHHHHHHHHHH
Confidence 34556666788888999999999987653
No 8
>2lfw_B NEPR anti sigma factor; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=9.11 E-value=1.4e+02 Score=20.95 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=15.5
Q ss_pred CCCCCcccccccCCCCCc
Q 023099 58 GPLLQDSGYALIPELGED 75 (287)
Q Consensus 58 ~~pLpDi~f~~~p~i~~~ 75 (287)
.+|+||.+.+++.+++..
T Consensus 41 ~E~VPDrFldLL~qLd~~ 58 (62)
T 2lfw_B 41 EEQVPDEMLDLLNKLALE 58 (62)
T ss_dssp SSCCCCTTGGGSTTTTSC
T ss_pred ccCCCHHHHHHHHHHHhc
Confidence 689999999999887653
No 9
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=8.80 E-value=43 Score=23.38 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=19.8
Q ss_pred HHHHhhcccc-cccchhhHHHHHHHHHHHHHHHHHh
Q 023099 11 KLWRKICSET-TIEISLLAENWKIILGGIIFQYIHG 45 (287)
Q Consensus 11 ~~~~~i~~~~-~~e~~~~~~~wKt~l~~~~~~~~~~ 45 (287)
++.+...+|. |+.||=.+|.++..+..+.+..+.+
T Consensus 6 ~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~~~i~~ 41 (65)
T 3din_D 6 KFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTS 41 (65)
T ss_dssp ----CHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCcCHHHHHhHHHHHHHHHHHHH
Confidence 4445555555 6778888888876666555554443
No 10
>3j01_B Preprotein translocase SECE subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Z 2aki_Z
Probab=8.41 E-value=61 Score=25.44 Aligned_cols=38 Identities=11% Similarity=-0.018 Sum_probs=25.0
Q ss_pred cchHHHHhhcccc-cccchhhHHHHHHHHHHHHHHHHHh
Q 023099 8 EAPKLWRKICSET-TIEISLLAENWKIILGGIIFQYIHG 45 (287)
Q Consensus 8 ~~~~~~~~i~~~~-~~e~~~~~~~wKt~l~~~~~~~~~~ 45 (287)
...++.|..++|. |+-||=.+|.+++.+..+.+..+.+
T Consensus 56 ~~~~F~kev~~ElkKV~WPtr~E~~~~T~vViv~vii~a 94 (116)
T 3j01_B 56 ATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMS 94 (116)
T ss_dssp CTTTCSSSHHHHHHHHHTTTTTSCHHHHHHHHTTHHHHH
T ss_pred hHHHHHHHHHHHhheeeCcCHHHHHhHHHHHHHHHHHHH
Confidence 3444555555555 6788889999988776655554443
Done!