Query 023100
Match_columns 287
No_of_seqs 200 out of 399
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:26:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3088 Secretory carrier memb 100.0 1.9E-94 4.1E-99 660.7 26.0 257 1-286 1-268 (313)
2 PF04144 SCAMP: SCAMP family; 100.0 4.7E-57 1E-61 395.5 15.7 165 118-286 1-171 (177)
3 KOG3088 Secretory carrier memb 99.5 2.2E-12 4.8E-17 119.8 16.5 140 81-233 54-216 (313)
4 PF04144 SCAMP: SCAMP family; 92.9 0.32 7E-06 42.8 6.6 108 123-231 2-116 (177)
5 TIGR03319 YmdA_YtgF conserved 81.6 2.6 5.5E-05 43.2 5.4 21 83-103 100-120 (514)
6 PRK00106 hypothetical protein; 80.4 2.9 6.4E-05 43.0 5.4 8 87-94 125-132 (535)
7 PF05915 DUF872: Eukaryotic pr 80.0 12 0.00025 31.0 7.8 40 172-213 70-109 (115)
8 KOG3312 Predicted membrane pro 77.3 18 0.00039 31.6 8.3 98 80-213 41-145 (186)
9 PF14257 DUF4349: Domain of un 76.5 27 0.00058 32.1 10.0 10 143-152 217-226 (262)
10 PF11712 Vma12: Endoplasmic re 74.2 52 0.0011 27.7 12.3 12 157-168 79-90 (142)
11 PF05884 ZYG-11_interact: Inte 71.4 67 0.0015 30.9 11.4 19 182-201 140-158 (299)
12 KOG3966 p53-mediated apoptosis 69.3 12 0.00027 35.7 6.0 66 139-206 89-173 (360)
13 KOG3859 Septins (P-loop GTPase 65.6 12 0.00026 36.2 5.1 31 81-111 334-372 (406)
14 KOG1150 Predicted molecular ch 62.2 9.8 0.00021 34.9 3.7 26 80-105 168-195 (250)
15 COG1422 Predicted membrane pro 61.7 46 0.00099 30.3 7.9 25 194-218 157-182 (201)
16 PF14265 DUF4355: Domain of un 59.4 22 0.00048 29.0 5.1 24 84-107 46-69 (125)
17 PRK10263 DNA translocase FtsK; 59.2 59 0.0013 37.3 9.7 10 240-249 142-151 (1355)
18 KOG2174 Leptin receptor gene-r 59.2 51 0.0011 27.9 7.2 94 156-258 15-108 (131)
19 PRK12705 hypothetical protein; 57.8 19 0.00041 37.0 5.4 19 85-103 89-107 (508)
20 PF03154 Atrophin-1: Atrophin- 56.8 8.9 0.00019 42.0 2.9 24 81-106 715-741 (982)
21 PRK10245 adrA diguanylate cycl 56.5 1.9E+02 0.0042 27.9 12.6 72 120-199 14-85 (366)
22 PF04210 MtrG: Tetrahydrometha 55.4 91 0.002 23.7 8.6 58 79-166 11-68 (70)
23 PRK11098 microcin B17 transpor 53.2 88 0.0019 31.3 9.0 68 135-207 46-124 (409)
24 PRK13741 conjugal transfer ent 53.2 1.2E+02 0.0026 26.9 8.8 17 194-210 78-98 (171)
25 PF11471 Sugarporin_N: Maltopo 52.0 32 0.0007 25.2 4.4 23 86-108 31-53 (60)
26 PF12737 Mating_C: C-terminal 51.0 17 0.00038 36.4 3.7 25 79-103 394-418 (419)
27 PF12737 Mating_C: C-terminal 50.2 16 0.00035 36.7 3.3 26 85-110 393-418 (419)
28 PF01956 DUF106: Integral memb 49.9 31 0.00067 29.6 4.7 19 80-98 43-61 (168)
29 PF07787 DUF1625: Protein of u 49.8 41 0.0009 30.8 5.8 22 150-171 191-212 (248)
30 KOG1690 emp24/gp25L/p24 family 48.6 54 0.0012 30.0 6.1 27 82-109 144-171 (215)
31 PF03154 Atrophin-1: Atrophin- 48.2 12 0.00027 40.9 2.3 15 82-96 580-597 (982)
32 PHA02148 hypothetical protein 46.9 62 0.0013 26.1 5.5 15 97-111 58-72 (110)
33 COG0239 CrcB Integral membrane 46.7 1.6E+02 0.0034 24.7 8.3 44 240-283 71-124 (126)
34 PF06476 DUF1090: Protein of u 46.6 29 0.00062 28.7 3.8 23 83-105 66-88 (115)
35 PF13863 DUF4200: Domain of un 46.1 55 0.0012 26.4 5.4 26 82-107 16-41 (126)
36 PF05297 Herpes_LMP1: Herpesvi 45.7 6.9 0.00015 37.6 0.0 25 177-202 103-127 (381)
37 PF06936 Selenoprotein_S: Sele 45.0 44 0.00096 30.0 5.0 22 82-103 89-110 (190)
38 KOG4721 Serine/threonine prote 44.3 18 0.0004 38.2 2.8 19 95-113 450-468 (904)
39 PRK10780 periplasmic chaperone 44.0 62 0.0013 27.8 5.7 17 82-98 85-101 (165)
40 PF14851 FAM176: FAM176 family 43.8 25 0.00054 30.6 3.1 17 88-105 118-134 (153)
41 KOG1996 mRNA splicing factor [ 43.5 42 0.00091 32.5 4.9 22 81-102 119-140 (378)
42 KOG3231 Predicted assembly/vac 42.6 57 0.0012 29.1 5.2 26 80-105 18-43 (208)
43 PF03938 OmpH: Outer membrane 42.4 59 0.0013 27.1 5.2 14 128-141 140-153 (158)
44 COG2991 Uncharacterized protei 42.2 25 0.00055 27.0 2.6 35 216-252 4-41 (77)
45 PF06305 DUF1049: Protein of u 41.1 39 0.00084 24.3 3.4 22 83-104 44-65 (68)
46 PHA03239 envelope glycoprotein 40.8 2E+02 0.0043 29.2 9.3 29 143-171 24-52 (429)
47 KOG4721 Serine/threonine prote 40.7 30 0.00066 36.7 3.7 21 88-108 450-470 (904)
48 PF09036 Bcr-Abl_Oligo: Bcr-Ab 39.9 48 0.001 25.6 3.8 24 82-105 28-51 (79)
49 PF06476 DUF1090: Protein of u 38.9 70 0.0015 26.4 4.9 21 78-98 68-88 (115)
50 KOG2391 Vacuolar sorting prote 38.4 60 0.0013 31.9 5.1 9 88-96 236-244 (365)
51 PF00816 Histone_HNS: H-NS his 38.4 55 0.0012 25.3 4.1 36 81-116 2-39 (93)
52 TIGR02051 MerR Hg(II)-responsi 37.8 86 0.0019 25.6 5.4 24 82-105 81-104 (124)
53 COG4818 Predicted membrane pro 37.8 87 0.0019 25.4 5.1 16 193-208 70-85 (105)
54 PF06673 L_lactis_ph-MCP: Lact 37.8 38 0.00082 31.2 3.5 20 85-104 19-38 (347)
55 PF13346 ABC2_membrane_5: ABC- 37.6 2.5E+02 0.0054 23.6 13.8 19 193-211 129-147 (206)
56 KOG3866 DNA-binding protein of 37.4 42 0.00091 32.8 3.9 31 75-105 341-371 (442)
57 PF07795 DUF1635: Protein of u 37.4 62 0.0013 29.7 4.8 13 85-97 24-36 (214)
58 PF05178 Kri1: KRI1-like famil 37.1 64 0.0014 26.0 4.4 15 84-98 3-17 (101)
59 TIGR02976 phageshock_pspB phag 36.9 75 0.0016 24.4 4.5 35 81-123 39-73 (75)
60 KOG1691 emp24/gp25L/p24 family 36.3 90 0.002 28.6 5.6 19 146-164 177-195 (210)
61 PF10716 NdhL: NADH dehydrogen 35.5 82 0.0018 24.6 4.5 40 179-218 22-61 (81)
62 PF15390 DUF4613: Domain of un 35.2 98 0.0021 32.7 6.3 25 81-105 545-569 (671)
63 PLN03181 glycosyltransferase; 35.0 45 0.00097 33.7 3.8 23 80-102 336-358 (453)
64 PF05529 Bap31: B-cell recepto 34.5 74 0.0016 27.8 4.8 23 83-105 157-179 (192)
65 PF11853 DUF3373: Protein of u 33.6 37 0.0008 34.8 3.0 26 81-106 28-53 (489)
66 PRK10929 putative mechanosensi 33.4 7.8E+02 0.017 28.1 15.8 16 132-148 772-787 (1109)
67 PF02344 Myc-LZ: Myc leucine z 33.1 1.2E+02 0.0027 19.6 4.3 17 94-110 11-27 (32)
68 PF07047 OPA3: Optic atrophy 3 33.1 80 0.0017 26.5 4.5 21 85-105 106-126 (134)
69 cd08760 Cyt_b561_FRRS1_like Eu 32.9 1.3E+02 0.0029 26.1 6.1 58 214-279 67-125 (191)
70 PF10176 DUF2370: Protein of u 32.2 1.7E+02 0.0037 27.2 6.8 30 255-284 192-221 (233)
71 PF05278 PEARLI-4: Arabidopsis 32.0 99 0.0021 29.4 5.3 19 86-104 206-224 (269)
72 KOG2881 Predicted membrane pro 31.9 25 0.00055 33.4 1.4 22 86-107 160-181 (294)
73 PF07334 IFP_35_N: Interferon- 31.6 1.3E+02 0.0029 23.2 5.1 15 91-105 11-25 (76)
74 TIGR02047 CadR-PbrR Cd(II)/Pb( 31.6 1.3E+02 0.0028 24.7 5.5 24 82-105 84-107 (127)
75 PRK01026 tetrahydromethanopter 31.3 2.5E+02 0.0054 21.8 10.0 60 79-168 14-73 (77)
76 PF09278 MerR-DNA-bind: MerR, 31.3 92 0.002 22.0 4.1 22 82-103 41-62 (65)
77 COG4372 Uncharacterized protei 31.2 90 0.0019 31.4 5.1 9 99-107 215-223 (499)
78 PF11214 Med2: Mediator comple 31.2 54 0.0012 26.9 3.0 9 80-88 79-87 (105)
79 PF04201 TPD52: Tumour protein 30.9 2.1E+02 0.0045 25.2 6.8 29 80-108 29-57 (162)
80 TIGR01149 mtrG N5-methyltetrah 30.8 2.4E+02 0.0053 21.5 8.5 57 80-166 12-68 (70)
81 PF05082 Rop-like: Rop-like; 30.7 49 0.0011 24.9 2.5 19 130-148 25-43 (66)
82 COG0815 Lnt Apolipoprotein N-a 30.3 5.8E+02 0.013 26.3 11.0 17 228-249 140-156 (518)
83 KOG3915 Transcription regulato 29.9 96 0.0021 31.9 5.1 24 82-105 521-545 (641)
84 cd07912 Tweety_N N-terminal do 29.8 2E+02 0.0044 28.9 7.5 30 142-171 199-228 (418)
85 KOG1962 B-cell receptor-associ 29.4 97 0.0021 28.5 4.7 23 80-102 158-180 (216)
86 PF15086 UPF0542: Uncharacteri 29.2 96 0.0021 23.8 3.9 17 84-100 43-59 (74)
87 KOG0065 Pleiotropic drug resis 29.1 1.5E+02 0.0033 34.1 7.0 62 139-201 1147-1226(1391)
88 PRK14139 heat shock protein Gr 29.1 2.6E+02 0.0056 25.0 7.3 8 89-96 41-48 (185)
89 PF05988 DUF899: Bacterial pro 29.0 61 0.0013 29.7 3.3 26 79-104 9-34 (211)
90 PF05988 DUF899: Bacterial pro 28.4 1.1E+02 0.0024 28.0 4.9 26 78-103 15-40 (211)
91 cd04769 HTH_MerR2 Helix-Turn-H 27.8 1.3E+02 0.0028 24.1 4.8 26 82-107 84-109 (116)
92 PF10205 KLRAQ: Predicted coil 27.6 1.8E+02 0.0038 23.8 5.4 18 80-97 33-50 (102)
93 cd04770 HTH_HMRTR Helix-Turn-H 27.5 1.4E+02 0.003 24.0 4.9 23 82-104 84-106 (123)
94 COG4372 Uncharacterized protei 27.4 1.3E+02 0.0027 30.4 5.3 14 90-103 213-226 (499)
95 KOG0933 Structural maintenance 27.2 1.5E+02 0.0033 33.2 6.4 32 76-107 673-704 (1174)
96 KOG3866 DNA-binding protein of 27.2 70 0.0015 31.3 3.5 25 85-109 344-368 (442)
97 PF07334 IFP_35_N: Interferon- 27.1 86 0.0019 24.3 3.4 27 81-107 8-34 (76)
98 TIGR03752 conj_TIGR03752 integ 27.0 97 0.0021 31.7 4.6 38 71-108 53-97 (472)
99 PRK00888 ftsB cell division pr 26.9 1.6E+02 0.0036 23.6 5.2 21 83-103 40-60 (105)
100 PF12848 ABC_tran_2: ABC trans 26.7 1.6E+02 0.0035 21.8 4.9 22 83-104 20-41 (85)
101 KOG4279 Serine/threonine prote 26.6 1.7E+02 0.0037 32.2 6.4 18 81-98 1106-1123(1226)
102 KOG2881 Predicted membrane pro 26.4 43 0.00093 31.9 1.9 25 79-103 160-184 (294)
103 PF06673 L_lactis_ph-MCP: Lact 25.8 52 0.0011 30.4 2.3 17 81-97 22-38 (347)
104 PHA03237 envelope glycoprotein 25.8 4.6E+02 0.0099 26.6 9.1 27 145-171 18-44 (424)
105 PF10268 Tmemb_161AB: Predicte 25.4 4.2E+02 0.0091 27.3 8.9 72 138-209 88-163 (486)
106 KOG3248 Transcription factor T 25.4 73 0.0016 31.4 3.3 8 118-125 288-295 (421)
107 PF03904 DUF334: Domain of unk 25.0 3.2E+02 0.007 25.4 7.2 77 198-285 143-229 (230)
108 KOG3859 Septins (P-loop GTPase 25.0 1.5E+02 0.0032 29.0 5.2 9 88-96 334-342 (406)
109 PHA01750 hypothetical protein 24.9 91 0.002 23.6 3.0 18 87-104 52-69 (75)
110 PF11831 Myb_Cef: pre-mRNA spl 24.8 1.1E+02 0.0024 28.0 4.3 17 96-112 116-132 (231)
111 COG5220 TFB3 Cdk activating ki 24.8 1.9E+02 0.0041 27.3 5.8 31 77-107 158-188 (314)
112 TIGR01299 synapt_SV2 synaptic 24.5 9.1E+02 0.02 26.0 15.9 9 106-114 152-160 (742)
113 PF06570 DUF1129: Protein of u 24.3 5E+02 0.011 22.9 10.7 12 161-172 93-104 (206)
114 PRK11637 AmiB activator; Provi 24.2 1.6E+02 0.0034 29.2 5.6 23 84-106 107-129 (428)
115 PLN02705 beta-amylase 24.2 83 0.0018 33.3 3.6 9 15-23 11-19 (681)
116 KOG2668 Flotillins [Intracellu 24.1 76 0.0017 31.5 3.2 12 92-103 268-279 (428)
117 PF14265 DUF4355: Domain of un 23.9 1.2E+02 0.0027 24.5 4.0 35 80-115 49-83 (125)
118 PF04521 Viral_P18: ssRNA posi 23.9 1.3E+02 0.0028 25.3 4.1 14 85-98 80-93 (120)
119 PRK13752 putative transcriptio 23.9 1.7E+02 0.0037 24.7 5.0 24 82-105 89-112 (144)
120 PF05600 DUF773: Protein of un 23.8 2.3E+02 0.005 29.1 6.8 50 80-146 134-184 (507)
121 PF13025 DUF3886: Protein of u 23.6 2.3E+02 0.005 21.6 5.1 16 81-96 21-36 (70)
122 PF11712 Vma12: Endoplasmic re 23.4 1.1E+02 0.0025 25.6 3.8 43 242-284 93-138 (142)
123 KOG1962 B-cell receptor-associ 23.4 1.6E+02 0.0034 27.2 4.9 28 81-108 152-179 (216)
124 COG3074 Uncharacterized protei 23.4 1.4E+02 0.003 22.9 3.8 16 81-96 29-44 (79)
125 KOG4552 Vitamin-D-receptor int 23.3 1.6E+02 0.0035 27.2 4.9 13 92-104 79-91 (272)
126 PF05529 Bap31: B-cell recepto 23.2 1.5E+02 0.0033 25.8 4.7 19 90-108 157-175 (192)
127 PF06667 PspB: Phage shock pro 23.1 2.1E+02 0.0045 22.0 4.8 34 83-124 41-74 (75)
128 PHA03065 Hypothetical protein; 23.0 1.9E+02 0.0041 29.3 5.7 24 132-155 118-142 (438)
129 COG1008 NuoM NADH:ubiquinone o 22.9 2.1E+02 0.0046 29.5 6.2 52 225-285 376-431 (497)
130 cd08765 Cyt_b561_CYBRD1 Verteb 22.8 1.3E+02 0.0029 26.0 4.2 23 259-281 85-107 (153)
131 TIGR02051 MerR Hg(II)-responsi 22.6 1.3E+02 0.0028 24.5 3.9 46 84-129 76-121 (124)
132 TIGR03752 conj_TIGR03752 integ 22.3 3E+02 0.0065 28.3 7.1 27 80-106 76-102 (472)
133 PRK09458 pspB phage shock prot 22.1 2.3E+02 0.0049 21.9 4.8 33 83-123 41-73 (75)
134 PRK14231 camphor resistance pr 22.0 4.7E+02 0.01 21.8 8.1 45 241-285 67-121 (129)
135 cd04787 HTH_HMRTR_unk Helix-Tu 21.8 3E+02 0.0065 22.6 6.0 24 82-105 84-107 (133)
136 PF09831 DUF2058: Uncharacteri 21.8 2E+02 0.0043 25.7 5.1 20 88-107 52-72 (177)
137 TIGR02043 ZntR Zn(II)-responsi 21.8 1.6E+02 0.0036 24.2 4.4 25 82-106 86-110 (131)
138 PF07047 OPA3: Optic atrophy 3 21.7 2E+02 0.0043 24.0 5.0 31 81-111 95-125 (134)
139 PF13863 DUF4200: Domain of un 21.7 2.3E+02 0.0049 22.7 5.2 25 81-105 22-46 (126)
140 PF03112 DUF244: Uncharacteriz 21.6 1.1E+02 0.0024 26.6 3.4 24 82-105 72-95 (158)
141 PLN02380 1-acyl-sn-glycerol-3- 21.5 3.4E+02 0.0073 26.8 7.2 25 81-105 259-284 (376)
142 PRK09514 zntR zinc-responsive 21.5 1.6E+02 0.0036 24.6 4.4 25 82-106 86-110 (140)
143 PF00957 Synaptobrevin: Synapt 21.4 3.7E+02 0.0079 20.3 9.6 6 147-152 64-69 (89)
144 PF04281 Tom22: Mitochondrial 21.4 2.5E+02 0.0055 23.9 5.5 20 177-196 93-112 (137)
145 PF15035 Rootletin: Ciliary ro 21.4 2.1E+02 0.0046 25.4 5.2 29 81-109 103-131 (182)
146 PF08467 Luteo_P1-P2: Luteovir 21.1 1.6E+02 0.0035 28.6 4.7 14 76-89 54-67 (361)
147 COG4064 MtrG Tetrahydromethano 21.0 3.9E+02 0.0084 20.5 8.8 23 145-167 50-72 (75)
148 PF11241 DUF3043: Protein of u 21.0 5.9E+02 0.013 22.6 9.1 17 183-199 109-125 (170)
149 PF08946 Osmo_CC: Osmosensory 21.0 2.3E+02 0.0051 19.8 4.2 25 81-105 16-40 (46)
150 PRK00736 hypothetical protein; 20.8 1.8E+02 0.004 21.6 4.0 17 82-98 28-44 (68)
151 PF14991 MLANA: Protein melan- 20.8 18 0.00038 30.1 -1.6 30 179-208 27-59 (118)
152 PRK00409 recombination and DNA 20.7 1.7E+02 0.0037 31.6 5.4 11 240-250 647-657 (782)
153 PF00957 Synaptobrevin: Synapt 20.6 2.1E+02 0.0046 21.7 4.5 19 87-105 34-52 (89)
154 PRK00295 hypothetical protein; 20.6 2E+02 0.0042 21.4 4.2 18 82-99 28-45 (68)
155 PRK13922 rod shape-determining 20.6 2.1E+02 0.0046 26.3 5.4 21 81-101 73-93 (276)
156 cd00225 API3 Ascaris pepsin in 20.6 2.2E+02 0.0049 24.8 5.0 19 79-97 36-54 (159)
157 PF12794 MscS_TM: Mechanosensi 20.5 4E+02 0.0087 25.6 7.4 16 132-148 296-311 (340)
158 PRK07331 cobalt transport prot 20.5 7.8E+02 0.017 23.8 12.0 58 144-207 73-130 (322)
159 KOG3091 Nuclear pore complex, 20.4 1.1E+02 0.0025 31.4 3.7 18 90-107 375-392 (508)
160 PF06696 Strep_SA_rep: Strepto 20.3 2.2E+02 0.0048 17.4 3.7 18 86-103 4-21 (25)
161 PF05278 PEARLI-4: Arabidopsis 20.2 2.2E+02 0.0048 27.1 5.3 28 85-112 198-225 (269)
162 PRK04325 hypothetical protein; 20.2 2.2E+02 0.0048 21.5 4.4 16 83-98 33-48 (74)
163 PF11460 DUF3007: Protein of u 20.2 74 0.0016 26.0 1.9 9 88-96 82-90 (104)
164 PRK10452 multidrug efflux syst 20.1 1.9E+02 0.0041 23.9 4.4 64 151-233 3-67 (120)
165 KOG0614 cGMP-dependent protein 20.1 1.9E+02 0.004 30.6 5.1 27 81-107 32-58 (732)
No 1
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-94 Score=660.73 Aligned_cols=257 Identities=53% Similarity=0.956 Sum_probs=237.7
Q ss_pred CCCCCCCCCCCC-cCCCCCCCccccccCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCccc-
Q 023100 1 MAGRYDSNPFDE-EEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPLDT- 78 (287)
Q Consensus 1 m~~~~d~nPf~~-~~~nPF~dp~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~- 78 (287)
|+ +||+|||+| |++|||+||+|+|+.++ ++++|.+++++. ++.++|+++|.+.
T Consensus 1 ~s-~~d~NPFadp~~~NPF~dp~~~q~~~~----------------------~~~~p~~~~~~~--~~~~~tv~~P~~~~ 55 (313)
T KOG3088|consen 1 MS-RYDPNPFAEPELVNPFADPAVVQPAST----------------------PPLSPLPPEPAP--SDQGPTVDIPLDSP 55 (313)
T ss_pred CC-CCCCCCCCCcccCCCCCCccccCCccC----------------------CCCCCCCCCCCC--CCCCCccccCCCCC
Confidence 66 999999999 89999999999986222 234445445442 2346788888877
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCC------CCCccccccccccchHHHHHHHHHHH
Q 023100 79 ---AADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWP------PFFPIIHHDIANEIPIHLQRLQYVAF 149 (287)
Q Consensus 79 ---~~~l~~k~~EL~~ke~EL~rRE~eL~~re~~~~~~g~~~~~~NwP------pf~P~~yhdI~~eIP~~~q~~v~~~y 149 (287)
..|+++||+||.||||||+|||+||+|||++++++|..+++|||| |++|||||||++|||+|+||+||++|
T Consensus 56 ~~~a~~~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~y 135 (313)
T KOG3088|consen 56 STQAKDLAKKQAELLKKQEELRRKEQELDRRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAY 135 (313)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHH
Confidence 679999999999999999999999999999999999999999999 57799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhchhhhhhhHHhhhhhhcCcchhHHHHHHHHHHHHHHHhh
Q 023100 150 ATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIF 229 (287)
Q Consensus 150 ~~wl~~~~~L~~N~i~~l~~~i~g~~~~~f~laily~i~g~P~sf~~WYrplY~A~r~dss~~f~~fF~~~~~~i~f~v~ 229 (287)
|+||++++||+||+++|+++||+|+++.+|+|||||+++|+||||+|||||||||||+|||++|+||||+|++|+++||+
T Consensus 136 ylwm~~~~tL~~Niia~la~~i~g~~~~~f~Laii~fllftPcsyVcWyRPlYkAFRsDSSf~F~~FFF~y~~q~~~~v~ 215 (313)
T KOG3088|consen 136 YLWMGLVLTLLWNIIACLAWWIKGGGGTIFGLAIIWFLLFTPCSYVCWYRPLYKAFRTDSSFNFGAFFFTYFFQIVFCVF 215 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhCCceeeEeehHHHHHhccccchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCccccCccccchhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 023100 230 ASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQVCFA 286 (287)
Q Consensus 230 ~aIG~p~~f~g~G~~G~i~ai~~~~~~~~vgi~~~i~a~lf~~~~~~s~~~l~~Vh~ 286 (287)
++||++ |||.||||.||+.++.+.+|||+|+|++++||+++++|+|||+|||+
T Consensus 216 qAvgf~----g~~~~G~i~ai~~~~~~i~v~i~m~i~a~~Ft~~av~~i~~i~kVh~ 268 (313)
T KOG3088|consen 216 QAVGFP----GWGLCGWIPAIDVLSGNIAVGILMLIGAGLFTLEAVLSIWVLQKVHS 268 (313)
T ss_pred HHHccC----CcchhhhhhHhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999955 99999999999999999999999999999999999999999999995
No 2
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=100.00 E-value=4.7e-57 Score=395.53 Aligned_cols=165 Identities=41% Similarity=0.825 Sum_probs=160.9
Q ss_pred ccCCCCCCC------ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhc
Q 023100 118 EEKNWPPFF------PIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVP 191 (287)
Q Consensus 118 ~~~NwPpf~------P~~yhdI~~eIP~~~q~~v~~~y~~wl~~~~~L~~N~i~~l~~~i~g~~~~~f~laily~i~g~P 191 (287)
|+|||||++ ||+||||++|||+++||+||++|++||++++||++|+++|++.++.|+++++|++|++|+++|+|
T Consensus 1 ~~~NwPp~~~~~~~~P~~y~di~~eIP~~~q~~v~~~y~~w~~~~~~l~~N~i~~~~~~~~~~~~~~~~lai~y~~~~~P 80 (177)
T PF04144_consen 1 RENNWPPFPKFCCIKPCFYHDISEEIPEEFQRLVKRAYYLWLFLAITLFWNFIACLALLIAGGSGSDFGLAILYLLLGTP 80 (177)
T ss_pred CCCCCCCCccccCCCCeEEeCHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHhH
Confidence 579999999 99999999999999999999999999999999999999999999987778899999999999999
Q ss_pred hhhhhhhHHhhhhhhcCcchhHHHHHHHHHHHHHHHhhhhccCCccccCccccchhhHHHhhcCCchhHHHHHHHHHHHH
Q 023100 192 GAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFC 271 (287)
Q Consensus 192 ~sf~~WYrplY~A~r~dss~~f~~fF~~~~~~i~f~v~~aIG~p~~f~g~G~~G~i~ai~~~~~~~~vgi~~~i~a~lf~ 271 (287)
+||+|||||+|||+|+|||++|++||+++++|++||++++||+| ++|+||||+|++++++|..+||+++|++++|+
T Consensus 81 ~sf~~wyrplY~A~r~dss~~f~~ff~~~~~~i~f~i~~aIG~p----~~G~~G~i~ai~~~~~~~~vgi~~~I~a~~w~ 156 (177)
T PF04144_consen 81 ASFFCWYRPLYKAFRTDSSFRFMWFFFFFFVHIIFCIIMAIGIP----GWGSCGWITAIDVFSNNKAVGILMLIVAILWT 156 (177)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccc----cccHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 79999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcC
Q 023100 272 LESLVSIWVIQVCFA 286 (287)
Q Consensus 272 ~~~~~s~~~l~~Vh~ 286 (287)
+++++++|+++|||+
T Consensus 157 ~~~~~~~~~l~kv~~ 171 (177)
T PF04144_consen 157 LEAVLSFWLLKKVHR 171 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999995
No 3
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.2e-12 Score=119.78 Aligned_cols=140 Identities=18% Similarity=0.167 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-cCCCCC--CCc------cccccccccchHHHH-HHHHHHHH
Q 023100 81 DLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLE-EKNWPP--FFP------IIHHDIANEIPIHLQ-RLQYVAFA 150 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~rRE~eL~~re~~~~~~g~~~~-~~NwPp--f~P------~~yhdI~~eIP~~~q-~~v~~~y~ 150 (287)
+.....+||.+||+||.|||+||+|||++++|...... -++-+. +|| .+..=|..||..|.. .+||+.|.
T Consensus 54 ~~~~~a~~~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~ 133 (313)
T KOG3088|consen 54 SPSTQAKDLAKKQAELLKKQEELRRKEQELDRRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKR 133 (313)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHH
Confidence 34445789999999999999999999999999864322 246664 899 899999999999996 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHH------------HhhhchhhhhhhHHhhhhhhcC-cchhHHHHH
Q 023100 151 TYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYF------------IAGVPGAYVLWYRPLYRAFRTE-SAMKFGWFF 217 (287)
Q Consensus 151 ~wl~~~~~L~~N~i~~l~~~i~g~~~~~f~laily~------------i~g~P~sf~~WYrplY~A~r~d-ss~~f~~fF 217 (287)
.|. +++-.+.||++ +++-++.|+ ++..-+.--|-|--+||-+.+- .+=+-+-|+
T Consensus 134 ~yy-----lwm~~~~tL~~--------Niia~la~~i~g~~~~~f~Laii~fllftPcsyVcWyRPlYkAFRsDSSf~F~ 200 (313)
T KOG3088|consen 134 AYY-----LWMGLVLTLLW--------NIIACLAWWIKGGGGTIFGLAIIWFLLFTPCSYVCWYRPLYKAFRTDSSFNFG 200 (313)
T ss_pred HHH-----HHHHHHHHHHH--------HHHHHHHHHHcCCCchhhHHHHHHHHHhCCceeeEeehHHHHHhccccchhhH
Confidence 994 33334444443 333333332 2222233338899999998765 455566666
Q ss_pred HHHHHHHHHHhhhhcc
Q 023100 218 LFYLLHIGFCIFASVA 233 (287)
Q Consensus 218 ~~~~~~i~f~v~~aIG 233 (287)
.+||+.++-+++-.+.
T Consensus 201 ~FFF~y~~q~~~~v~q 216 (313)
T KOG3088|consen 201 AFFFTYFFQIVFCVFQ 216 (313)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666665555444433
No 4
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=92.95 E-value=0.32 Score=42.81 Aligned_cols=108 Identities=8% Similarity=-0.029 Sum_probs=69.7
Q ss_pred CCCCcccc------ccccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhchhhh
Q 023100 123 PPFFPIIH------HDIANEIPIHLQ-RLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYV 195 (287)
Q Consensus 123 Ppf~P~~y------hdI~~eIP~~~q-~~v~~~y~~wl~~~~~L~~N~i~~l~~~i~g~~~~~f~laily~i~g~P~sf~ 195 (287)
.|+||.++ .=+.+||.+|.+ ..+++.+..+....+..+.=++..+.+++.--.+.+ +-.+...++...+...
T Consensus 2 ~~NwPp~~~~~~~~P~~y~di~~eIP~~~q~~v~~~y~~w~~~~~~l~~N~i~~~~~~~~~~~-~~~~~lai~y~~~~~P 80 (177)
T PF04144_consen 2 ENNWPPFPKFCCIKPCFYHDISEEIPEEFQRLVKRAYYLWLFLAITLFWNFIACLALLIAGGS-GSDFGLAILYLLLGTP 80 (177)
T ss_pred CCCCCCCccccCCCCeEEeCHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cceehHHHHHHHHHhH
Confidence 47999999 999999999996 888998888865544322222222222222233334 4445555666666667
Q ss_pred hhhHHhhhhhhcCcchhHHHHHHHHHHHHHHHhhhh
Q 023100 196 LWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFAS 231 (287)
Q Consensus 196 ~WYrplY~A~r~dss~~f~~fF~~~~~~i~f~v~~a 231 (287)
+-|.-+|+...+--...-...|..|++...+.+...
T Consensus 81 ~sf~~wyrplY~A~r~dss~~f~~ff~~~~~~i~f~ 116 (177)
T PF04144_consen 81 ASFFCWYRPLYKAFRTDSSFRFMWFFFFFFVHIIFC 116 (177)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 888889998887755555555666666666666555
No 5
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=81.56 E-value=2.6 Score=43.19 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023100 83 KKKEKELQAKEAELRRREQDV 103 (287)
Q Consensus 83 ~~k~~EL~~ke~EL~rRE~eL 103 (287)
.+++++|++|+++|++|++++
T Consensus 100 ekre~~Le~ke~~L~~re~eL 120 (514)
T TIGR03319 100 DKKEENLEKKEKELSNKEKNL 120 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334433333333333
No 6
>PRK00106 hypothetical protein; Provisional
Probab=80.45 E-value=2.9 Score=43.05 Aligned_cols=8 Identities=50% Similarity=0.688 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 023100 87 KELQAKEA 94 (287)
Q Consensus 87 ~EL~~ke~ 94 (287)
++|+++++
T Consensus 125 ~eLe~kek 132 (535)
T PRK00106 125 KTLESKEQ 132 (535)
T ss_pred HHHHHHHH
Confidence 33333333
No 7
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=80.00 E-value=12 Score=31.01 Aligned_cols=40 Identities=30% Similarity=0.513 Sum_probs=28.0
Q ss_pred cCCChhHHHHHHHHHHhhhchhhhhhhHHhhhhhhcCcchhH
Q 023100 172 KGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKF 213 (287)
Q Consensus 172 ~g~~~~~f~laily~i~g~P~sf~~WYrplY~A~r~dss~~f 213 (287)
.+.....+.+-++=+++++|+.|.+ |-+|.|.|.-+.+.|
T Consensus 70 ~~~~~~~~~llilG~L~fIPG~Y~~--~i~y~a~rg~~Gysf 109 (115)
T PF05915_consen 70 DGDRDRGWALLILGILCFIPGFYHT--RIAYYAWRGYKGYSF 109 (115)
T ss_pred CCCCcccchHHHHHHHHHhccHHHH--HHHHHHHcCCCCCCH
Confidence 3444556777777778999999987 567888776554433
No 8
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=77.26 E-value=18 Score=31.64 Aligned_cols=98 Identities=22% Similarity=0.278 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCcccccCCCCCCCccccccccccchHHHHHHHHHHHHHHHH
Q 023100 80 ADLKKKEKELQAKEAEL-----RRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLG 154 (287)
Q Consensus 80 ~~l~~k~~EL~~ke~EL-----~rRE~eL~~re~~~~~~g~~~~~~NwPpf~P~~yhdI~~eIP~~~q~~v~~~y~~wl~ 154 (287)
+|..++.+.||+|.+|. +.+.+.+.|.|+.+.+.+ | |. .++|+--..-++
T Consensus 41 a~vdK~sKKLE~~K~~~~~s~~k~~kkKieR~Ee~LK~~n---R-------------Dl---------Sl~kmKsmfaig 95 (186)
T KOG3312|consen 41 AEVDKQSKKLEKKKEENGDSNDKSKKKKIERVEEKLKNNN---R-------------DL---------SLFKMKSMFAIG 95 (186)
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhccc---c-------------ch---------HHHHHHHHHHHH
Confidence 36667777777777765 224444555555554433 1 22 244443333444
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhchhhh--hhhHHhhhhhhcCcchhH
Q 023100 155 LFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYV--LWYRPLYRAFRTESAMKF 213 (287)
Q Consensus 155 ~~~~L~~N~i~~l~~~i~g~~~~~f~laily~i~g~P~sf~--~WYrplY~A~r~dss~~f 213 (287)
++++.++.++.+++ .|.-+.- +=|.|++++ +.+|.|-.-=.+|-|+-|
T Consensus 96 l~ftal~~~fNSiF---eGrVVAk--------LPF~Pis~iqglSHRnL~GdD~TDCSfiF 145 (186)
T KOG3312|consen 96 LAFTALLGMFNSIF---EGRVVAK--------LPFTPISIIQGLSHRNLKGDDMTDCSFIF 145 (186)
T ss_pred HHHHHHHHHHHhhh---cceeEEe--------cCCcchHHHhcccccCCCCCCccchHHHH
Confidence 55555555555543 2221111 356777776 666666554445555533
No 9
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=76.48 E-value=27 Score=32.12 Aligned_cols=10 Identities=10% Similarity=0.125 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 023100 143 RLQYVAFATY 152 (287)
Q Consensus 143 ~~v~~~y~~w 152 (287)
++..-....|
T Consensus 217 ~~~~al~~~~ 226 (262)
T PF14257_consen 217 RFRDALKNGW 226 (262)
T ss_pred HHHHHHHHHH
Confidence 4444444445
No 10
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=74.21 E-value=52 Score=27.67 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHH
Q 023100 157 LCLLWNIVAVTT 168 (287)
Q Consensus 157 ~~L~~N~i~~l~ 168 (287)
+++++|++.+++
T Consensus 79 ls~v~Nilvsv~ 90 (142)
T PF11712_consen 79 LSTVFNILVSVF 90 (142)
T ss_pred HHHHHHHHHHHH
Confidence 578899987754
No 11
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=71.36 E-value=67 Score=30.90 Aligned_cols=19 Identities=21% Similarity=0.060 Sum_probs=9.9
Q ss_pred HHHHHHhhhchhhhhhhHHh
Q 023100 182 AIIYFIAGVPGAYVLWYRPL 201 (287)
Q Consensus 182 aily~i~g~P~sf~~WYrpl 201 (287)
|++...+.+|+...- |.+.
T Consensus 140 Aaila~iviP~~~~y-~ln~ 158 (299)
T PF05884_consen 140 AAILAYIVIPLIAYY-YLNK 158 (299)
T ss_pred HHHHHHHHHHHHHHh-hccc
Confidence 444445566765444 5544
No 12
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=69.34 E-value=12 Score=35.70 Aligned_cols=66 Identities=15% Similarity=0.349 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcCC-Chh-------HHHHHHHH-HHhhhchhhh------hhhH
Q 023100 139 IHLQRLQYVAFATYLGLFLCLLWNIVAVTTA----WIKGE-GVK-------IWFLAIIY-FIAGVPGAYV------LWYR 199 (287)
Q Consensus 139 ~~~q~~v~~~y~~wl~~~~~L~~N~i~~l~~----~i~g~-~~~-------~f~laily-~i~g~P~sf~------~WYr 199 (287)
..++.+.+-.+..|+. +.|+||.+.-++- .+.|. .+. .++|+.++ .+...|+.+. +||-
T Consensus 89 ~~F~cc~wngg~~w~s--~llf~~v~ipiL~~~~s~f~g~~s~h~~vw~wl~~~ls~lfg~iwVlPiF~lSkiV~alWF~ 166 (360)
T KOG3966|consen 89 DSFLCCLWNGGAMWIS--FLLFWQVCIPILGLFFSFFDGTDSGHNVVWGWLHPILSLLFGYIWVLPIFFLSKIVQALWFS 166 (360)
T ss_pred HHHHHHHHhcchHHHH--HHHHHHHHHHHHHHHHheeccCCccccchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777888999964 4779998754432 23332 111 23444443 3344555544 7887
Q ss_pred Hhhhhhh
Q 023100 200 PLYRAFR 206 (287)
Q Consensus 200 plY~A~r 206 (287)
-+=+|+.
T Consensus 167 DIa~aa~ 173 (360)
T KOG3966|consen 167 DIAGAAM 173 (360)
T ss_pred HHHHHHH
Confidence 7766644
No 13
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=65.58 E-value=12 Score=36.24 Aligned_cols=31 Identities=35% Similarity=0.608 Sum_probs=16.0
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQ--------AKEAELRRREQDVRRKEEAAA 111 (287)
Q Consensus 81 ~l~~k~~EL~--------~ke~EL~rRE~eL~~re~~~~ 111 (287)
++++||+|+. .||+||++.|+||..+.+.+.
T Consensus 334 e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~lk 372 (406)
T KOG3859|consen 334 ELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLK 372 (406)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555542 345555555555555444433
No 14
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=62.25 E-value=9.8 Score=34.86 Aligned_cols=26 Identities=42% Similarity=0.740 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 023100 80 ADLKKKEKELQAKEAELRR--REQDVRR 105 (287)
Q Consensus 80 ~~l~~k~~EL~~ke~EL~r--RE~eL~~ 105 (287)
+|+.+|.++|+.|+.|=++ ||.|+++
T Consensus 168 ae~erkRk~~e~r~~~eRkr~re~eIea 195 (250)
T KOG1150|consen 168 AELERKRKELEARANEERKRQREEEIEA 195 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4677777777777665433 5555544
No 15
>COG1422 Predicted membrane protein [Function unknown]
Probab=61.72 E-value=46 Score=30.25 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=12.9
Q ss_pred hhhhhHHhhhhhh-cCcchhHHHHHH
Q 023100 194 YVLWYRPLYRAFR-TESAMKFGWFFL 218 (287)
Q Consensus 194 f~~WYrplY~A~r-~dss~~f~~fF~ 218 (287)
+..++-++|.-.. .|----.+|||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~gWi~WYfL 182 (201)
T COG1422 157 LPTLFHILYHTAVFGDFLGWIGWYFL 182 (201)
T ss_pred hHHhhhhhhhccccccchHHHHHHHH
Confidence 3445555665554 343445556655
No 16
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=59.40 E-value=22 Score=28.97 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 84 KKEKELQAKEAELRRREQDVRRKE 107 (287)
Q Consensus 84 ~k~~EL~~ke~EL~rRE~eL~~re 107 (287)
+.+.|++.++++|+.+++++.+++
T Consensus 46 k~~~e~~~~~~el~~~~~e~~~~e 69 (125)
T PF14265_consen 46 KAQEELEELEKELEELEAELARRE 69 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666665544
No 17
>PRK10263 DNA translocase FtsK; Provisional
Probab=59.21 E-value=59 Score=37.27 Aligned_cols=10 Identities=20% Similarity=0.312 Sum_probs=6.0
Q ss_pred CccccchhhH
Q 023100 240 GKSLTGVLPA 249 (287)
Q Consensus 240 g~G~~G~i~a 249 (287)
+.|..|.+.+
T Consensus 142 gGGIIG~lLs 151 (1355)
T PRK10263 142 SGGVIGSLLS 151 (1355)
T ss_pred ccchHHHHHH
Confidence 5566666644
No 18
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=59.16 E-value=51 Score=27.91 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhchhhhhhhHHhhhhhhcCcchhHHHHHHHHHHHHHHHhhhhccCC
Q 023100 156 FLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPP 235 (287)
Q Consensus 156 ~~~L~~N~i~~l~~~i~g~~~~~f~laily~i~g~P~sf~~WYrplY~A~r~dss~~f~~fF~~~~~~i~f~v~~aIG~p 235 (287)
++.+.+-+++|-+ .. .---.+..+.|.+.=+|+-++.=+|--+.--+++++-.=...|+. +-.+..++|+|
T Consensus 15 a~G~~l~iL~CAL--~~--nwwPlf~~~~yvl~PiP~l~f~a~~~~~d~~~~~~~~idlA~FlT-----g~~vvs~falP 85 (131)
T KOG2174|consen 15 AVGLLLLILGCAL--FR--NWWPLFVILFYVLSPIPNLLFIAGRTQHDFDATSDACIDLAKFLT-----GAIVVSAFALP 85 (131)
T ss_pred HHHHHHHHHHhhh--cc--chHHHHHHHHHHhcCCchHHhccccceecccccccHHHHHHHHHh-----cchhhhhhhhH
Confidence 3456667777722 11 111246778898888888888777765555555544322222221 45667788999
Q ss_pred ccccCccccchhhHHHhhcCCch
Q 023100 236 IIFKGKSLTGVLPAVDVMGDHAL 258 (287)
Q Consensus 236 ~~f~g~G~~G~i~ai~~~~~~~~ 258 (287)
+++..-|..||-...-.+..|..
T Consensus 86 iVl~ha~lI~~gAc~l~~tg~~i 108 (131)
T KOG2174|consen 86 IVLAHAGLIGWGACALVLTGNSI 108 (131)
T ss_pred HHHHHhhHhhhhhhhhhhcCCch
Confidence 99887777777766555555544
No 19
>PRK12705 hypothetical protein; Provisional
Probab=57.84 E-value=19 Score=37.01 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023100 85 KEKELQAKEAELRRREQDV 103 (287)
Q Consensus 85 k~~EL~~ke~EL~rRE~eL 103 (287)
|++.|++|.++|++||++|
T Consensus 89 ~e~~l~~~~~~l~~~~~~l 107 (508)
T PRK12705 89 KEEQLDARAEKLDNLENQL 107 (508)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443
No 20
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=56.78 E-value=8.9 Score=41.97 Aligned_cols=24 Identities=42% Similarity=0.753 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAELR---RREQDVRRK 106 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~---rRE~eL~~r 106 (287)
|...+|+|| ||+|++ -|||||+.|
T Consensus 715 ~~~~rErel--rERE~Rere~reReLrdR 741 (982)
T PF03154_consen 715 DPAAREREL--REREIRERELRERELRDR 741 (982)
T ss_pred CHHhhhhhh--hhhhhhhHHHHHHHHHHh
Confidence 455555555 333332 245555544
No 21
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=56.51 E-value=1.9e+02 Score=27.85 Aligned_cols=72 Identities=15% Similarity=0.057 Sum_probs=45.6
Q ss_pred CCCCCCCccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhchhhhhhhH
Q 023100 120 KNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYR 199 (287)
Q Consensus 120 ~NwPpf~P~~yhdI~~eIP~~~q~~v~~~y~~wl~~~~~L~~N~i~~l~~~i~g~~~~~f~laily~i~g~P~sf~~WYr 199 (287)
..|||..+. +|--..--+++|++|..=..-....++++++++.. .+.....|++-+.+.++.+-++|.+--|
T Consensus 14 ~~~~~~~~~------~~~~~~~~~~~~r~~~~r~~g~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~p~~a~~~~~~ 85 (366)
T PRK10245 14 GEEPPLTPQ------NEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVS--HPPPGWWWLLLVGWAFVWPHLAWQIASR 85 (366)
T ss_pred ccCCCCcch------hhhccccchhHHHHHHHHHHHHHHhHHHHHHHHHh--cccchHHHHHHHHHHHHhHHHHHHHHHh
Confidence 458887653 22222334788999988766556667777766443 2333346777778877777777776444
No 22
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=55.45 E-value=91 Score=23.75 Aligned_cols=58 Identities=14% Similarity=0.345 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCCCccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 023100 79 AADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLC 158 (287)
Q Consensus 79 ~~~l~~k~~EL~~ke~EL~rRE~eL~~re~~~~~~g~~~~~~NwPpf~P~~yhdI~~eIP~~~q~~v~~~y~~wl~~~~~ 158 (287)
.+|.++-++.|++-|+.++.-..|+.+|. | ...=|-+=++|.+-.++.+.
T Consensus 11 ~~~~~~i~~rLd~iEeKvEf~~~Ei~Qr~------G------------------------kkiGRDiGIlYG~v~Glii~ 60 (70)
T PF04210_consen 11 PDDFNEIMKRLDEIEEKVEFTNAEIAQRA------G------------------------KKIGRDIGILYGLVIGLIIF 60 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH------h------------------------HHhhhHHHHHHHHHHHHHHH
Confidence 34677777778888888888888887664 2 11223356888888877777
Q ss_pred HHHHHHHH
Q 023100 159 LLWNIVAV 166 (287)
Q Consensus 159 L~~N~i~~ 166 (287)
+++..+..
T Consensus 61 ~~~~~l~~ 68 (70)
T PF04210_consen 61 IIYIVLSS 68 (70)
T ss_pred HHHHHHHH
Confidence 66666554
No 23
>PRK11098 microcin B17 transporter; Reviewed
Probab=53.18 E-value=88 Score=31.34 Aligned_cols=68 Identities=24% Similarity=0.445 Sum_probs=37.3
Q ss_pred ccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhH-------HHHHHHHHHhhhchhhhhhhHHhhh
Q 023100 135 NEIPIHLQRLQ---YVAFATYLGLFLCLLWNIVAVTTAWI-KGEGVKI-------WFLAIIYFIAGVPGAYVLWYRPLYR 203 (287)
Q Consensus 135 ~eIP~~~q~~v---~~~y~~wl~~~~~L~~N~i~~l~~~i-~g~~~~~-------f~laily~i~g~P~sf~~WYrplY~ 203 (287)
++.|...-+.. .+++|+|...|..++ + .++.. +..+-+. ..+.+.+...++-...--||++.|+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~s~~~w~~w~lLg~~~il~l~l~~v~l~V~~n~w~~~Fyd 120 (409)
T PRK11098 46 GQLPIGAARFWSPDFLWFYAYYLVCVGLF----A-GFWFIYSPHPWQRWSILGSALIIFVTWFLVQVSVAVNAWYAPFYD 120 (409)
T ss_pred cCCCcchhHhcCchHHHHHHHHHHHHHHH----h-hhhcccCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 44554444333 567777765544332 2 12222 2222222 2223345556666677789999999
Q ss_pred hhhc
Q 023100 204 AFRT 207 (287)
Q Consensus 204 A~r~ 207 (287)
|+.+
T Consensus 121 aLq~ 124 (409)
T PRK11098 121 LIQT 124 (409)
T ss_pred HHHH
Confidence 9986
No 24
>PRK13741 conjugal transfer entry exclusion protein TraS; Provisional
Probab=53.18 E-value=1.2e+02 Score=26.93 Aligned_cols=17 Identities=41% Similarity=0.436 Sum_probs=10.8
Q ss_pred hhhhhHHhhhh----hhcCcc
Q 023100 194 YVLWYRPLYRA----FRTESA 210 (287)
Q Consensus 194 f~~WYrplY~A----~r~dss 210 (287)
.+.-.|-+|-+ +|++|.
T Consensus 78 ~i~n~R~lYLSiP~~fRk~S~ 98 (171)
T PRK13741 78 AITNGRMLYLSIPDEFRKESK 98 (171)
T ss_pred HHHHHHHHHhcCcHHHHhhhH
Confidence 34556777765 567765
No 25
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=52.00 E-value=32 Score=25.21 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023100 86 EKELQAKEAELRRREQDVRRKEE 108 (287)
Q Consensus 86 ~~EL~~ke~EL~rRE~eL~~re~ 108 (287)
|+.|+..|++|+.-|++++.-|.
T Consensus 31 EqRLa~LE~rL~~ae~ra~~ae~ 53 (60)
T PF11471_consen 31 EQRLAALEQRLQAAEQRAQAAEA 53 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666655555555443
No 26
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=50.98 E-value=17 Score=36.41 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 79 AADLKKKEKELQAKEAELRRREQDV 103 (287)
Q Consensus 79 ~~~l~~k~~EL~~ke~EL~rRE~eL 103 (287)
.+++++|++||+..|+++++.|+||
T Consensus 394 ~~~~~AK~reL~eLeAq~~aL~AEL 418 (419)
T PF12737_consen 394 EAEREAKRRELEELEAQARALRAEL 418 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455666666665555555555554
No 27
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=50.16 E-value=16 Score=36.65 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 85 KEKELQAKEAELRRREQDVRRKEEAA 110 (287)
Q Consensus 85 k~~EL~~ke~EL~rRE~eL~~re~~~ 110 (287)
.++|+++|.+||+..|++.++.|.++
T Consensus 393 ~~~~~~AK~reL~eLeAq~~aL~AEL 418 (419)
T PF12737_consen 393 PEAEREAKRRELEELEAQARALRAEL 418 (419)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 47788999999999999888876654
No 28
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=49.87 E-value=31 Score=29.58 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023100 80 ADLKKKEKELQAKEAELRR 98 (287)
Q Consensus 80 ~~l~~k~~EL~~ke~EL~r 98 (287)
++.++++++++++.+|+++
T Consensus 43 ~~~~~~~~~~~~~~~~l~~ 61 (168)
T PF01956_consen 43 DKYQKRMKEFQKRYRELRK 61 (168)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666644
No 29
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=49.79 E-value=41 Score=30.80 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 023100 150 ATYLGLFLCLLWNIVAVTTAWI 171 (287)
Q Consensus 150 ~~wl~~~~~L~~N~i~~l~~~i 171 (287)
++-|+..+.+++..+..++.++
T Consensus 191 ~llmf~G~~~~~~~l~~l~~~~ 212 (248)
T PF07787_consen 191 WLLMFIGFFLLFSPLYTLVDWI 212 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3344555666666666655554
No 30
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.63 E-value=54 Score=29.95 Aligned_cols=27 Identities=30% Similarity=0.647 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 023100 82 LKKKEKELQAKEAELRRREQDVRR-KEEA 109 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~rRE~eL~~-re~~ 109 (287)
+..|...|..|-++++ ||++++| ||+.
T Consensus 144 l~~Rv~~L~~~~~~Ir-kEQ~~~R~RE~~ 171 (215)
T KOG1690|consen 144 LEGRVRQLNSRLESIR-KEQNLQREREET 171 (215)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3444444444444443 6776654 6543
No 31
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=48.25 E-value=12 Score=40.95 Aligned_cols=15 Identities=47% Similarity=0.510 Sum_probs=8.3
Q ss_pred HHHHHHHH---HHHHHHH
Q 023100 82 LKKKEKEL---QAKEAEL 96 (287)
Q Consensus 82 l~~k~~EL---~~ke~EL 96 (287)
|.||.+|+ .|||+|.
T Consensus 580 LAkKRee~~ek~RReaEq 597 (982)
T PF03154_consen 580 LAKKREERVEKARREAEQ 597 (982)
T ss_pred HhhhhHHHHHHHHhhhhc
Confidence 55555554 4566665
No 32
>PHA02148 hypothetical protein
Probab=46.94 E-value=62 Score=26.07 Aligned_cols=15 Identities=40% Similarity=0.680 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 023100 97 RRREQDVRRKEEAAA 111 (287)
Q Consensus 97 ~rRE~eL~~re~~~~ 111 (287)
.+||.||++.|.+++
T Consensus 58 ~~R~NEL~~HE~Air 72 (110)
T PHA02148 58 KSRENELRRHEAAIR 72 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 446666666665444
No 33
>COG0239 CrcB Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]
Probab=46.73 E-value=1.6e+02 Score=24.71 Aligned_cols=44 Identities=16% Similarity=0.311 Sum_probs=30.4
Q ss_pred CccccchhhHHHhhc--------C-CchhHHHHHHHHHHHHHHHH-HHHHhhhh
Q 023100 240 GKSLTGVLPAVDVMG--------D-HALVGIFYFIGFGLFCLESL-VSIWVIQV 283 (287)
Q Consensus 240 g~G~~G~i~ai~~~~--------~-~~~vgi~~~i~a~lf~~~~~-~s~~~l~~ 283 (287)
+.|+||=.++.+.|+ + +...++.++....+.++.++ ++.+..++
T Consensus 71 ~tGflGglTTFSTfs~E~~~L~~~~~~~~a~~yi~~sv~~gl~a~~lG~~l~~~ 124 (126)
T COG0239 71 GTGFLGGLTTFSTFSLETVSLLQEGQYLLALAYILLSVLLGLLAVFLGLLLARR 124 (126)
T ss_pred HHHHccchhhHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378899998888764 2 34567888888888887644 44555544
No 34
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=46.62 E-value=29 Score=28.67 Aligned_cols=23 Identities=13% Similarity=0.489 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023100 83 KKKEKELQAKEAELRRREQDVRR 105 (287)
Q Consensus 83 ~~k~~EL~~ke~EL~rRE~eL~~ 105 (287)
..++++.+.+++++++||+||+.
T Consensus 66 ~e~q~ki~~~~~kV~ere~eL~e 88 (115)
T PF06476_consen 66 AERQQKIAEKQQKVAEREAELKE 88 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777777777754
No 35
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=46.07 E-value=55 Score=26.38 Aligned_cols=26 Identities=35% Similarity=0.737 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRRREQDVRRKE 107 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~rRE~eL~~re 107 (287)
|..+.+|.+++++.++.|+.+|+.++
T Consensus 16 l~~kr~e~~~~~~~~~~~e~~L~~~e 41 (126)
T PF13863_consen 16 LDTKREEIERREEQLKQREEELEKKE 41 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 36
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=45.74 E-value=6.9 Score=37.63 Aligned_cols=25 Identities=16% Similarity=0.458 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhchhhhhhhHHhh
Q 023100 177 KIWFLAIIYFIAGVPGAYVLWYRPLY 202 (287)
Q Consensus 177 ~~f~laily~i~g~P~sf~~WYrplY 202 (287)
+..++.++.+++++-++..+|++ +.
T Consensus 103 Q~LF~Gi~~l~l~~lLaL~vW~Y-m~ 127 (381)
T PF05297_consen 103 QTLFVGIVILFLCCLLALGVWFY-MW 127 (381)
T ss_dssp --------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 45788888888888888889988 55
No 37
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=44.95 E-value=44 Score=30.01 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRRREQDV 103 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~rRE~eL 103 (287)
-+|.|+|++++.++.+++++++
T Consensus 89 R~RmQEE~dakA~~~kEKq~q~ 110 (190)
T PF06936_consen 89 RRRMQEELDAKAEEYKEKQKQE 110 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788887777665544433
No 38
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=44.33 E-value=18 Score=38.21 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 023100 95 ELRRREQDVRRKEEAAARA 113 (287)
Q Consensus 95 EL~rRE~eL~~re~~~~~~ 113 (287)
+|+.||+||.+||+++.+.
T Consensus 450 qLelkEkElaerEq~l~rr 468 (904)
T KOG4721|consen 450 QLELKEKELAEREQALERR 468 (904)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4555666666666655544
No 39
>PRK10780 periplasmic chaperone; Provisional
Probab=43.98 E-value=62 Score=27.79 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRR 98 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~r 98 (287)
..++++||.++++++++
T Consensus 85 ~~~~~~el~~~~~~~q~ 101 (165)
T PRK10780 85 RTKLEKDVMAQRQTFSQ 101 (165)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555544444433
No 40
>PF14851 FAM176: FAM176 family
Probab=43.75 E-value=25 Score=30.62 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023100 88 ELQAKEAELRRREQDVRR 105 (287)
Q Consensus 88 EL~~ke~EL~rRE~eL~~ 105 (287)
||+ |++.|++||+.++.
T Consensus 118 ~~e-~A~rlEeRe~iirE 134 (153)
T PF14851_consen 118 ELE-RAQRLEERERIIRE 134 (153)
T ss_pred HHH-HHHHHHHHHHHHHH
Confidence 544 66677788877664
No 41
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=43.53 E-value=42 Score=32.48 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAELRRREQD 102 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~rRE~e 102 (287)
+-.++++|++|+.+|.++||.+
T Consensus 119 ~er~~~re~~r~~~e~eeRekr 140 (378)
T KOG1996|consen 119 DERKQRRETAREVAEIEEREKR 140 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666655543
No 42
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.61 E-value=57 Score=29.07 Aligned_cols=26 Identities=12% Similarity=0.473 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 80 ADLKKKEKELQAKEAELRRREQDVRR 105 (287)
Q Consensus 80 ~~l~~k~~EL~~ke~EL~rRE~eL~~ 105 (287)
.+|.+.++++++-.+.++++|++|..
T Consensus 18 ReLRkt~RdierdRr~me~~Ek~LEl 43 (208)
T KOG3231|consen 18 RELRKTQRDIERDRRAMEKQEKQLEL 43 (208)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888888888888877754
No 43
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=42.42 E-value=59 Score=27.13 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=7.5
Q ss_pred cccccccccchHHH
Q 023100 128 IIHHDIANEIPIHL 141 (287)
Q Consensus 128 ~~yhdI~~eIP~~~ 141 (287)
++|+|=..||-.+.
T Consensus 140 vly~~~~~DIT~~V 153 (158)
T PF03938_consen 140 VLYADPAYDITDEV 153 (158)
T ss_dssp EEEE-TTSE-HHHH
T ss_pred eEeeCCCCChHHHH
Confidence 77776666665543
No 44
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.20 E-value=25 Score=26.99 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhhhccCCccccC---ccccchhhHHHh
Q 023100 216 FFLFYLLHIGFCIFASVAPPIIFKG---KSLTGVLPAVDV 252 (287)
Q Consensus 216 fF~~~~~~i~f~v~~aIG~p~~f~g---~G~~G~i~ai~~ 252 (287)
|++.|.+.+++.+.|+||.- ++. .|+||=|.++..
T Consensus 4 ~lltFg~Fllvi~gMsiG~I--~krk~I~GSCGGi~alGi 41 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGYI--FKRKSIKGSCGGIAALGI 41 (77)
T ss_pred HHHHHHHHHHHHHHHhHhhh--eeccccccccccHHhhcc
Confidence 56667777788888899953 443 688998888753
No 45
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=41.14 E-value=39 Score=24.31 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023100 83 KKKEKELQAKEAELRRREQDVR 104 (287)
Q Consensus 83 ~~k~~EL~~ke~EL~rRE~eL~ 104 (287)
.+...++.+.++|+++.|+|++
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555543
No 46
>PHA03239 envelope glycoprotein M; Provisional
Probab=40.77 E-value=2e+02 Score=29.19 Aligned_cols=29 Identities=14% Similarity=0.306 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023100 143 RLQYVAFATYLGLFLCLLWNIVAVTTAWI 171 (287)
Q Consensus 143 ~~v~~~y~~wl~~~~~L~~N~i~~l~~~i 171 (287)
+.=++.+..|+..++|.++-++..++.+|
T Consensus 24 ~~D~i~~r~W~~qv~~f~l~~l~~~v~lI 52 (429)
T PHA03239 24 ELERISWRIWLTEAACFILGALLFLLAIF 52 (429)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34478888998888887777776654443
No 47
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=40.69 E-value=30 Score=36.66 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023100 88 ELQAKEAELRRREQDVRRKEE 108 (287)
Q Consensus 88 EL~~ke~EL~rRE~eL~~re~ 108 (287)
+|+-||.||.+||+.|.+|+.
T Consensus 450 qLelkEkElaerEq~l~rr~p 470 (904)
T KOG4721|consen 450 QLELKEKELAEREQALERRCP 470 (904)
T ss_pred HHHHHHHHHHHHHHHHHhhCC
Confidence 556677777777777776663
No 48
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=39.88 E-value=48 Score=25.57 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRRREQDVRR 105 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~rRE~eL~~ 105 (287)
+..-+.||++..+.++|.|+|+.+
T Consensus 28 vgd~e~eLerCK~sirrLeqevnk 51 (79)
T PF09036_consen 28 VGDIEQELERCKASIRRLEQEVNK 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHH
Confidence 444677899999999999988854
No 49
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=38.91 E-value=70 Score=26.39 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=14.8
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 023100 78 TAADLKKKEKELQAKEAELRR 98 (287)
Q Consensus 78 ~~~~l~~k~~EL~~ke~EL~r 98 (287)
.+....+++.++..|++||++
T Consensus 68 ~q~ki~~~~~kV~ere~eL~e 88 (115)
T PF06476_consen 68 RQQKIAEKQQKVAEREAELKE 88 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445677777778888888754
No 50
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.41 E-value=60 Score=31.87 Aligned_cols=9 Identities=44% Similarity=0.608 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 023100 88 ELQAKEAEL 96 (287)
Q Consensus 88 EL~~ke~EL 96 (287)
+|+|+|+||
T Consensus 236 slkRt~EeL 244 (365)
T KOG2391|consen 236 SLKRTEEEL 244 (365)
T ss_pred HHHhhHHHH
Confidence 333333333
No 51
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=38.36 E-value=55 Score=25.31 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCcc
Q 023100 81 DLKKKEKELQAKEAELRRRE--QDVRRKEEAAARAGIV 116 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~rRE--~eL~~re~~~~~~g~~ 116 (287)
+|.+..++|++..++++++| +-+..-.+.++..|+.
T Consensus 2 eL~~~~~~l~~~~~~~~~~e~~~~~~~i~~~~~~~Gis 39 (93)
T PF00816_consen 2 ELEAQIKELEKEIEERRKQEREEAIAEIRELMAEYGIS 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 56677777776665554433 2233333445555644
No 52
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=37.84 E-value=86 Score=25.60 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRRREQDVRR 105 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~rRE~eL~~ 105 (287)
++++.++++++.+||++.++.|+.
T Consensus 81 l~~~~~~l~~~i~~L~~~~~~L~~ 104 (124)
T TIGR02051 81 ASRKLKSVQAKMADLLRIERLLEE 104 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666655554
No 53
>COG4818 Predicted membrane protein [Function unknown]
Probab=37.82 E-value=87 Score=25.45 Aligned_cols=16 Identities=44% Similarity=1.076 Sum_probs=14.5
Q ss_pred hhhhhhHHhhhhhhcC
Q 023100 193 AYVLWYRPLYRAFRTE 208 (287)
Q Consensus 193 sf~~WYrplY~A~r~d 208 (287)
+|.+|--+.|||.|.+
T Consensus 70 a~iLwlv~mykAyrGe 85 (105)
T COG4818 70 AFILWLVCMYKAYRGE 85 (105)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 7889999999999976
No 54
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=37.82 E-value=38 Score=31.24 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023100 85 KEKELQAKEAELRRREQDVR 104 (287)
Q Consensus 85 k~~EL~~ke~EL~rRE~eL~ 104 (287)
|-+||++|-+||.+..+||+
T Consensus 19 kvreleakveelnkereelk 38 (347)
T PF06673_consen 19 KVRELEAKVEELNKEREELK 38 (347)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 45677888888865444454
No 55
>PF13346 ABC2_membrane_5: ABC-2 family transporter protein
Probab=37.56 E-value=2.5e+02 Score=23.63 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=11.7
Q ss_pred hhhhhhHHhhhhhhcCcch
Q 023100 193 AYVLWYRPLYRAFRTESAM 211 (287)
Q Consensus 193 sf~~WYrplY~A~r~dss~ 211 (287)
.+..-+-|+|-.+..+++-
T Consensus 129 i~~~i~lp~~~~~g~~~~~ 147 (206)
T PF13346_consen 129 IFYSIFLPLYYKFGYKKGR 147 (206)
T ss_pred HHHHHHHHHHHHhcchhHH
Confidence 3445567777777766543
No 56
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=37.43 E-value=42 Score=32.80 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=24.8
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 75 PLDTAADLKKKEKELQAKEAELRRREQDVRR 105 (287)
Q Consensus 75 ~~~~~~~l~~k~~EL~~ke~EL~rRE~eL~~ 105 (287)
+..+-++|++-++|+..||+||+.+.++|++
T Consensus 341 ~~yTeEEL~~fE~e~A~ke~El~~ka~~lqq 371 (442)
T KOG3866|consen 341 KVYTEEELQQFEREYAQKEQELQHKAEALQQ 371 (442)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhchHHHhhC
Confidence 4567778888889999999999887777755
No 57
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=37.37 E-value=62 Score=29.73 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 023100 85 KEKELQAKEAELR 97 (287)
Q Consensus 85 k~~EL~~ke~EL~ 97 (287)
.++|+.|+|+++.
T Consensus 24 A~EElRk~eeqi~ 36 (214)
T PF07795_consen 24 ANEELRKREEQIA 36 (214)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666666553
No 58
>PF05178 Kri1: KRI1-like family; InterPro: IPR018034 The Kri1 protein is also known as KRR1-interacting protein 1. The Saccharomyces cerevisiae member of this family is found to be required for the assembly of preribosomal 40S subunits in the nucleolus []. KRR1 is highly expressed in dividing cells and its expression ceases almost completely when cells enter the stationary phase.
Probab=37.12 E-value=64 Score=26.00 Aligned_cols=15 Identities=60% Similarity=0.815 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHH
Q 023100 84 KKEKELQAKEAELRR 98 (287)
Q Consensus 84 ~k~~EL~~ke~EL~r 98 (287)
|+++|-.+|++||+|
T Consensus 3 RK~~Ek~~k~eElkr 17 (101)
T PF05178_consen 3 RKEEEKQEKEEELKR 17 (101)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566667777765
No 59
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=36.91 E-value=75 Score=24.36 Aligned_cols=35 Identities=31% Similarity=0.398 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCC
Q 023100 81 DLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWP 123 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~rRE~eL~~re~~~~~~g~~~~~~NwP 123 (287)
+..++-+||.++.+.|++|=+-|++- ...+.+||-
T Consensus 39 ~d~~~L~~L~~~a~rm~eRI~tLE~I--------Ld~e~P~wR 73 (75)
T TIGR02976 39 DDQALLQELYAKADRLEERIDTLERI--------LDAEHPNWR 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HcCCCcCcc
Confidence 44555566666665555544444331 223567874
No 60
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.28 E-value=90 Score=28.58 Aligned_cols=19 Identities=26% Similarity=0.121 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023100 146 YVAFATYLGLFLCLLWNIV 164 (287)
Q Consensus 146 ~~~y~~wl~~~~~L~~N~i 164 (287)
++++++.|.+++|+.++..
T Consensus 177 rv~~fSi~Sl~v~~~va~~ 195 (210)
T KOG1691|consen 177 RVAWFSILSLVVLLSVAGW 195 (210)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677777666666555443
No 61
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=35.46 E-value=82 Score=24.64 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhhchhhhhhhHHhhhhhhcCcchhHHHHHH
Q 023100 179 WFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFL 218 (287)
Q Consensus 179 f~laily~i~g~P~sf~~WYrplY~A~r~dss~~f~~fF~ 218 (287)
-+++.+|+++..++.|.-==.++|++-+-|.-+.|+.-|+
T Consensus 22 ~~l~~~YLlVvP~~l~~wm~~RWy~~~~~Er~~~y~lvF~ 61 (81)
T PF10716_consen 22 AALAGLYLLVVPLILYFWMNKRWYVMSSFERLFMYFLVFL 61 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778889776666555544567888877775554444333
No 62
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=35.21 E-value=98 Score=32.73 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAELRRREQDVRR 105 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~rRE~eL~~ 105 (287)
...++|+|.++.+.||+|.-+++.+
T Consensus 545 ~~~~~eke~~~L~~~lE~Ls~~~~e 569 (671)
T PF15390_consen 545 NNLQKEKETSQLSKELERLSRNFTE 569 (671)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHH
Confidence 4456777778888888775555444
No 63
>PLN03181 glycosyltransferase; Provisional
Probab=35.00 E-value=45 Score=33.71 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023100 80 ADLKKKEKELQAKEAELRRREQD 102 (287)
Q Consensus 80 ~~l~~k~~EL~~ke~EL~rRE~e 102 (287)
++..+|.+|++|+.+-|+||-+|
T Consensus 336 e~~~~~y~~~er~~~~lrrrhae 358 (453)
T PLN03181 336 DNITERYLEMEREDATLRRRHAE 358 (453)
T ss_pred HHHHHHHHHhhhcchhhhhhhhh
Confidence 45555666666666666665554
No 64
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.48 E-value=74 Score=27.84 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023100 83 KKKEKELQAKEAELRRREQDVRR 105 (287)
Q Consensus 83 ~~k~~EL~~ke~EL~rRE~eL~~ 105 (287)
++.++|+++.++||++.|+|+..
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~ 179 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEA 179 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566555555443
No 65
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=33.59 E-value=37 Score=34.81 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAELRRREQDVRRK 106 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~rRE~eL~~r 106 (287)
++++|-|||+++-+||++...++++|
T Consensus 28 ~~~qkie~L~kql~~Lk~q~~~l~~~ 53 (489)
T PF11853_consen 28 DLLQKIEALKKQLEELKAQQDDLNDR 53 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccc
Confidence 44446666666666666554455443
No 66
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=33.44 E-value=7.8e+02 Score=28.11 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=10.1
Q ss_pred cccccchHHHHHHHHHH
Q 023100 132 DIANEIPIHLQRLQYVA 148 (287)
Q Consensus 132 dI~~eIP~~~q~~v~~~ 148 (287)
|+ +.|-....|+++.+
T Consensus 772 dl-~~Is~QslrL~r~~ 787 (1109)
T PRK10929 772 DL-DAISAQSLRLVRSI 787 (1109)
T ss_pred CH-HHHHHHHHHHHHHH
Confidence 44 35666667887774
No 67
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=33.13 E-value=1.2e+02 Score=19.59 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023100 94 AELRRREQDVRRKEEAA 110 (287)
Q Consensus 94 ~EL~rRE~eL~~re~~~ 110 (287)
+.|+||.++|+.+=+.+
T Consensus 11 eqLrrr~eqLK~kLeql 27 (32)
T PF02344_consen 11 EQLRRRREQLKHKLEQL 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444455544333
No 68
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=33.09 E-value=80 Score=26.46 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023100 85 KEKELQAKEAELRRREQDVRR 105 (287)
Q Consensus 85 k~~EL~~ke~EL~rRE~eL~~ 105 (287)
|+++++.+.++|+++..+|+.
T Consensus 106 Ke~~~~~~l~~L~~~i~~L~~ 126 (134)
T PF07047_consen 106 KEEELQERLEELEERIEELEE 126 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 69
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=32.92 E-value=1.3e+02 Score=26.06 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhhhhccCCccccCccccchhhHH-HhhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 023100 214 GWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAV-DVMGDHALVGIFYFIGFGLFCLESLVSIW 279 (287)
Q Consensus 214 ~~fF~~~~~~i~f~v~~aIG~p~~f~g~G~~G~i~ai-~~~~~~~~vgi~~~i~a~lf~~~~~~s~~ 279 (287)
.||.+.-.+|++-.+...+|.- +|++... ..-+.+..=.++.++..++.+++.+++++
T Consensus 67 ~~~~~H~~~q~~~~~~~i~g~~--------~~~~~~~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~ 125 (191)
T cd08760 67 VWFYLHAGLQLLAVLLAIAGFV--------LGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLL 125 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH--------HHHHhhccCCCCCcCcchhhhHHHHHHHHHHHHHHHh
Confidence 4666777778766665555521 2333210 00011123356667777788888887774
No 70
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=32.22 E-value=1.7e+02 Score=27.22 Aligned_cols=30 Identities=7% Similarity=0.196 Sum_probs=20.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023100 255 DHALVGIFYFIGFGLFCLESLVSIWVIQVC 284 (287)
Q Consensus 255 ~~~~vgi~~~i~a~lf~~~~~~s~~~l~~V 284 (287)
.+.+++++.++.-.+-++.+++..|..||-
T Consensus 192 ~~~wla~~Lm~~G~fI~irsi~dY~rVKR~ 221 (233)
T PF10176_consen 192 SNPWLAYILMAFGWFIFIRSIIDYWRVKRM 221 (233)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555567899999988874
No 71
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=32.01 E-value=99 Score=29.37 Aligned_cols=19 Identities=37% Similarity=0.730 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023100 86 EKELQAKEAELRRREQDVR 104 (287)
Q Consensus 86 ~~EL~~ke~EL~rRE~eL~ 104 (287)
.+||+..++||+++|++++
T Consensus 206 ~~ELe~~~EeL~~~Eke~~ 224 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVK 224 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555543
No 72
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=31.88 E-value=25 Score=33.39 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023100 86 EKELQAKEAELRRREQDVRRKE 107 (287)
Q Consensus 86 ~~EL~~ke~EL~rRE~eL~~re 107 (287)
|||++.-|+||++||.|+++.+
T Consensus 160 ~eE~eEVe~el~~~~~~~~~~~ 181 (294)
T KOG2881|consen 160 QEELEEVEAELAKREDELDRLE 181 (294)
T ss_pred hhhHHHHHHHHHhccchhhhhh
Confidence 6788888888888887776643
No 73
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=31.59 E-value=1.3e+02 Score=23.18 Aligned_cols=15 Identities=13% Similarity=0.397 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 023100 91 AKEAELRRREQDVRR 105 (287)
Q Consensus 91 ~ke~EL~rRE~eL~~ 105 (287)
+.++||++.|+||+.
T Consensus 11 ~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 11 RLKEEIQKLEAELQQ 25 (76)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444555543
No 74
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=31.55 E-value=1.3e+02 Score=24.69 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRRREQDVRR 105 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~rRE~eL~~ 105 (287)
+.++.++|+++-+||++..+.|++
T Consensus 84 l~~~~~~l~~~i~~L~~~~~~L~~ 107 (127)
T TIGR02047 84 LDEHISHVRARIIKLQALIEQLVD 107 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544543
No 75
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=31.30 E-value=2.5e+02 Score=21.79 Aligned_cols=60 Identities=18% Similarity=0.328 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCCCccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 023100 79 AADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLC 158 (287)
Q Consensus 79 ~~~l~~k~~EL~~ke~EL~rRE~eL~~re~~~~~~g~~~~~~NwPpf~P~~yhdI~~eIP~~~q~~v~~~y~~wl~~~~~ 158 (287)
.+|.++-++.|+.-|+.++.--.|+.+|. | +..=|-+=++|..-+++.+.
T Consensus 14 ~~d~~~i~~rLD~iEeKVEftn~Ei~Qr~------G------------------------kkvGRDiGIlYG~viGlli~ 63 (77)
T PRK01026 14 PKDFKEIQKRLDEIEEKVEFTNAEIFQRI------G------------------------KKVGRDIGILYGLVIGLLIV 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------h------------------------HHhhhHHHHHHHHHHHHHHH
Confidence 34666666777777777777777776654 2 11223456889888888887
Q ss_pred HHHHHHHHHH
Q 023100 159 LLWNIVAVTT 168 (287)
Q Consensus 159 L~~N~i~~l~ 168 (287)
+++..+..++
T Consensus 64 ~i~~~~~~~~ 73 (77)
T PRK01026 64 LVYIILSPIF 73 (77)
T ss_pred HHHHHHHHHH
Confidence 7777766544
No 76
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=31.27 E-value=92 Score=21.96 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRRREQDV 103 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~rRE~eL 103 (287)
+.++-++++++-++|++.+++|
T Consensus 41 l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 41 LEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445554444444444443
No 77
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=31.19 E-value=90 Score=31.39 Aligned_cols=9 Identities=22% Similarity=0.652 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 023100 99 REQDVRRKE 107 (287)
Q Consensus 99 RE~eL~~re 107 (287)
|++||++|+
T Consensus 215 r~~ela~r~ 223 (499)
T COG4372 215 RTEELARRA 223 (499)
T ss_pred HHHHHHHHH
Confidence 444444444
No 78
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=31.16 E-value=54 Score=26.85 Aligned_cols=9 Identities=44% Similarity=0.785 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 023100 80 ADLKKKEKE 88 (287)
Q Consensus 80 ~~l~~k~~E 88 (287)
.++.++.+|
T Consensus 79 ~e~~q~~ee 87 (105)
T PF11214_consen 79 VELKQKQEE 87 (105)
T ss_pred HHHHHHHHH
Confidence 344444444
No 79
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=30.87 E-value=2.1e+02 Score=25.22 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 80 ADLKKKEKELQAKEAELRRREQDVRRKEE 108 (287)
Q Consensus 80 ~~l~~k~~EL~~ke~EL~rRE~eL~~re~ 108 (287)
++-++-.+||.+-|+|+....+-|..+|+
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqvL~aKer 57 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQVLAAKER 57 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556777777776554444444443
No 80
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=30.81 E-value=2.4e+02 Score=21.47 Aligned_cols=57 Identities=18% Similarity=0.317 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCCCccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 023100 80 ADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCL 159 (287)
Q Consensus 80 ~~l~~k~~EL~~ke~EL~rRE~eL~~re~~~~~~g~~~~~~NwPpf~P~~yhdI~~eIP~~~q~~v~~~y~~wl~~~~~L 159 (287)
+|.++-++.|+.-|+.++.--.|+.+|. | +..=|-+-++|..-+++.+++
T Consensus 12 ~d~~~i~~rLd~iEeKVEf~~~E~~Qr~------G------------------------kk~GRDiGIlYG~viGlli~~ 61 (70)
T TIGR01149 12 DEFNEVMKRLDEIEEKVEFVNGEVAQRI------G------------------------KKVGRDIGILYGLVIGLILFL 61 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------h------------------------HHhhhHHHHHHHHHHHHHHHH
Confidence 4556566666666676776667776654 2 112234568888888777766
Q ss_pred HHHHHHH
Q 023100 160 LWNIVAV 166 (287)
Q Consensus 160 ~~N~i~~ 166 (287)
+++.+..
T Consensus 62 ~~~~l~~ 68 (70)
T TIGR01149 62 IYILLSS 68 (70)
T ss_pred HHHHHHh
Confidence 6666543
No 81
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=30.73 E-value=49 Score=24.90 Aligned_cols=19 Identities=32% Similarity=0.627 Sum_probs=11.9
Q ss_pred cccccccchHHHHHHHHHH
Q 023100 130 HHDIANEIPIHLQRLQYVA 148 (287)
Q Consensus 130 yhdI~~eIP~~~q~~v~~~ 148 (287)
.||+++|+|...+++.-++
T Consensus 25 LHDLaEdLP~~w~~i~~vA 43 (66)
T PF05082_consen 25 LHDLAEDLPTNWEEIPEVA 43 (66)
T ss_dssp HHHHHHCTTTTGGGHHHHH
T ss_pred HHHHHHccchhHHHHHHHH
Confidence 4677777777766555443
No 82
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=30.29 E-value=5.8e+02 Score=26.30 Aligned_cols=17 Identities=18% Similarity=-0.015 Sum_probs=9.4
Q ss_pred hhhhccCCccccCccccchhhH
Q 023100 228 IFASVAPPIIFKGKSLTGVLPA 249 (287)
Q Consensus 228 v~~aIG~p~~f~g~G~~G~i~a 249 (287)
.+..-|.| |+..|+-..
T Consensus 140 ~~~~tGFp-----W~~~Gy~q~ 156 (518)
T COG0815 140 GWSLTGFP-----WLLLGYSQW 156 (518)
T ss_pred hccCcCCc-----hhhhchhhc
Confidence 33455666 666665443
No 83
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=29.91 E-value=96 Score=31.86 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH
Q 023100 82 LKKKEKELQAKEAELRR-REQDVRR 105 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~r-RE~eL~~ 105 (287)
+++||-.+|++|=.++. |||||+.
T Consensus 521 ~qekQiq~Ek~ELkmd~lrerelre 545 (641)
T KOG3915|consen 521 AQEKQIQLEKTELKMDFLRERELRE 545 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556655555555 7777654
No 84
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=29.77 E-value=2e+02 Score=28.89 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023100 142 QRLQYVAFATYLGLFLCLLWNIVAVTTAWI 171 (287)
Q Consensus 142 q~~v~~~y~~wl~~~~~L~~N~i~~l~~~i 171 (287)
..+.+.=++=|+.+.+.|++.++.|+++++
T Consensus 199 ~~~~~~E~~Rw~~~l~lL~~~lviC~~~l~ 228 (418)
T cd07912 199 DQVSLYESYRWLAYLGLLSLLLVICLVLLV 228 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455577788899999999999999987664
No 85
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=29.39 E-value=97 Score=28.48 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023100 80 ADLKKKEKELQAKEAELRRREQD 102 (287)
Q Consensus 80 ~~l~~k~~EL~~ke~EL~rRE~e 102 (287)
+|+.+.++||++++.+|++.+.+
T Consensus 158 ~~~~kL~~el~~~~~~Le~~~~~ 180 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKLEKAQKK 180 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555666555555554443
No 86
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=29.16 E-value=96 Score=23.85 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023100 84 KKEKELQAKEAELRRRE 100 (287)
Q Consensus 84 ~k~~EL~~ke~EL~rRE 100 (287)
+-+++++++|.|-++++
T Consensus 43 kLaK~ie~~ere~K~k~ 59 (74)
T PF15086_consen 43 KLAKAIEKEEREKKKKA 59 (74)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456666555544443
No 87
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.13 E-value=1.5e+02 Score=34.15 Aligned_cols=62 Identities=19% Similarity=0.154 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCC---hhHHHHH-----HHHHHhhhchhhhhhhHH
Q 023100 139 IHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIK----------GEG---VKIWFLA-----IIYFIAGVPGAYVLWYRP 200 (287)
Q Consensus 139 ~~~q~~v~~~y~~wl~~~~~L~~N~i~~l~~~i~----------g~~---~~~f~la-----ily~i~g~P~sf~~WYrp 200 (287)
...|.++..++..+|..++....|.-.. .-.+. ..+ -..+.+| +-|-++..-+.|+|||.|
T Consensus 1147 ~~~q~lqn~m~a~yma~v~~~~~~~~~~-~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~ 1225 (1391)
T KOG0065|consen 1147 HNVQGLQNAMGAAYMATVFSGPNNNQLQ-QPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYP 1225 (1391)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhhhhhhh-hhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeee
Confidence 5678888888888886544333332221 11221 111 1123333 236677777788899988
Q ss_pred h
Q 023100 201 L 201 (287)
Q Consensus 201 l 201 (287)
+
T Consensus 1226 i 1226 (1391)
T KOG0065|consen 1226 I 1226 (1391)
T ss_pred c
Confidence 4
No 88
>PRK14139 heat shock protein GrpE; Provisional
Probab=29.07 E-value=2.6e+02 Score=25.01 Aligned_cols=8 Identities=38% Similarity=0.393 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 023100 89 LQAKEAEL 96 (287)
Q Consensus 89 L~~ke~EL 96 (287)
|+..++|+
T Consensus 41 l~~le~e~ 48 (185)
T PRK14139 41 LAEAEAKA 48 (185)
T ss_pred HHHHHHHH
Confidence 33333333
No 89
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=28.98 E-value=61 Score=29.66 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 79 AADLKKKEKELQAKEAELRRREQDVR 104 (287)
Q Consensus 79 ~~~l~~k~~EL~~ke~EL~rRE~eL~ 104 (287)
.++-++..++|-+||.||.|.-.+|.
T Consensus 9 ~eew~~Ar~~LL~~EKeltR~~dala 34 (211)
T PF05988_consen 9 REEWLAARDALLAREKELTRARDALA 34 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666666665444453
No 90
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=28.36 E-value=1.1e+02 Score=27.97 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 78 TAADLKKKEKELQAKEAELRRREQDV 103 (287)
Q Consensus 78 ~~~~l~~k~~EL~~ke~EL~rRE~eL 103 (287)
+-++|.++||||.|...+|.++.|+|
T Consensus 15 Ar~~LL~~EKeltR~~dalaa~RR~L 40 (211)
T PF05988_consen 15 ARDALLAREKELTRARDALAAERRRL 40 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44567777777777777776555544
No 91
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.76 E-value=1.3e+02 Score=24.13 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRRREQDVRRKE 107 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~rRE~eL~~re 107 (287)
+.++.++|+++-++|++..+.|....
T Consensus 84 l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (116)
T cd04769 84 LEDKKQEIRAQITELQQLLARLDAFE 109 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666665555433
No 92
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=27.56 E-value=1.8e+02 Score=23.77 Aligned_cols=18 Identities=39% Similarity=0.451 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023100 80 ADLKKKEKELQAKEAELR 97 (287)
Q Consensus 80 ~~l~~k~~EL~~ke~EL~ 97 (287)
++|+.|+.+|.+.|+|++
T Consensus 33 e~Lk~ke~~LRk~eqE~d 50 (102)
T PF10205_consen 33 EQLKEKEQALRKLEQEND 50 (102)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356666667766666664
No 93
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.47 E-value=1.4e+02 Score=24.03 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRRREQDVR 104 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~rRE~eL~ 104 (287)
++++.++|+++-++|++..+.|+
T Consensus 84 l~~~~~~l~~~i~~l~~~~~~l~ 106 (123)
T cd04770 84 LEEKLAEVEAKIAELQALRAELA 106 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544444443
No 94
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=27.39 E-value=1.3e+02 Score=30.40 Aligned_cols=14 Identities=43% Similarity=0.565 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 023100 90 QAKEAELRRREQDV 103 (287)
Q Consensus 90 ~~ke~EL~rRE~eL 103 (287)
+.+++||.+|++.+
T Consensus 213 q~r~~ela~r~aa~ 226 (499)
T COG4372 213 QARTEELARRAAAA 226 (499)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 95
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.17 E-value=1.5e+02 Score=33.21 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=20.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 76 LDTAADLKKKEKELQAKEAELRRREQDVRRKE 107 (287)
Q Consensus 76 ~~~~~~l~~k~~EL~~ke~EL~rRE~eL~~re 107 (287)
+..-.++...|.||+..+.||+..|+||+..+
T Consensus 673 L~~l~~l~~~~~~~~~~q~el~~le~eL~~le 704 (1174)
T KOG0933|consen 673 LRQLQKLKQAQKELRAIQKELEALERELKSLE 704 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334566666677777777777777666544
No 96
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=27.15 E-value=70 Score=31.31 Aligned_cols=25 Identities=44% Similarity=0.587 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 85 KEKELQAKEAELRRREQDVRRKEEA 109 (287)
Q Consensus 85 k~~EL~~ke~EL~rRE~eL~~re~~ 109 (287)
.++||.+-|+|+..||+||+...++
T Consensus 344 TeEEL~~fE~e~A~ke~El~~ka~~ 368 (442)
T KOG3866|consen 344 TEEELQQFEREYAQKEQELQHKAEA 368 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHhchHHH
Confidence 3566666666666666666655543
No 97
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=27.14 E-value=86 Score=24.25 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAELRRREQDVRRKE 107 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~rRE~eL~~re 107 (287)
+-.+..+||++.|+||++..++.+-++
T Consensus 8 En~~Lk~eiqkle~ELq~~~~~~qIk~ 34 (76)
T PF07334_consen 8 ENARLKEEIQKLEAELQQNKREFQIKE 34 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 334556677777889987666655443
No 98
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.98 E-value=97 Score=31.69 Aligned_cols=38 Identities=24% Similarity=0.436 Sum_probs=17.4
Q ss_pred CccCCccchHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 71 PIDIPLDTAADL-------KKKEKELQAKEAELRRREQDVRRKEE 108 (287)
Q Consensus 71 ~~~~~~~~~~~l-------~~k~~EL~~ke~EL~rRE~eL~~re~ 108 (287)
-.|.|.|+-..| +++.++|.+.-+.|+++.++|++||+
T Consensus 53 egDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~ 97 (472)
T TIGR03752 53 EGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQ 97 (472)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345566554444 44444444333334444444555553
No 99
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=26.85 E-value=1.6e+02 Score=23.63 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023100 83 KKKEKELQAKEAELRRREQDV 103 (287)
Q Consensus 83 ~~k~~EL~~ke~EL~rRE~eL 103 (287)
+++-++|+++.++|+++-+.|
T Consensus 40 ~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 40 QQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444333333
No 100
>PF12848 ABC_tran_2: ABC transporter
Probab=26.68 E-value=1.6e+02 Score=21.82 Aligned_cols=22 Identities=14% Similarity=0.493 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023100 83 KKKEKELQAKEAELRRREQDVR 104 (287)
Q Consensus 83 ~~k~~EL~~ke~EL~rRE~eL~ 104 (287)
..++++++..+++.++.+++++
T Consensus 20 ~~k~~~~~~~~~~~~~~~k~~~ 41 (85)
T PF12848_consen 20 EQKEERRERQERQYEKQQKEIK 41 (85)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 3344444444444444444433
No 101
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.59 E-value=1.7e+02 Score=32.19 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAELRR 98 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~r 98 (287)
+..+-+|+|.|||.|+++
T Consensus 1106 et~rlre~L~rke~E~Qa 1123 (1226)
T KOG4279|consen 1106 ETERLREILDRKEREYQA 1123 (1226)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 445555666666666654
No 102
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=26.44 E-value=43 Score=31.88 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 79 AADLKKKEKELQAKEAELRRREQDV 103 (287)
Q Consensus 79 ~~~l~~k~~EL~~ke~EL~rRE~eL 103 (287)
++|+++-|+||+++|.|++++|+.+
T Consensus 160 ~eE~eEVe~el~~~~~~~~~~~~~~ 184 (294)
T KOG2881|consen 160 QEELEEVEAELAKREDELDRLEEGL 184 (294)
T ss_pred hhhHHHHHHHHHhccchhhhhhhcC
Confidence 4455555566665555555544433
No 103
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=25.84 E-value=52 Score=30.37 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAELR 97 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~ 97 (287)
+|+.|-+||.+..+||+
T Consensus 22 eleakveelnkereelk 38 (347)
T PF06673_consen 22 ELEAKVEELNKEREELK 38 (347)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666665555554
No 104
>PHA03237 envelope glycoprotein M; Provisional
Probab=25.78 E-value=4.6e+02 Score=26.57 Aligned_cols=27 Identities=15% Similarity=0.421 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023100 145 QYVAFATYLGLFLCLLWNIVAVTTAWI 171 (287)
Q Consensus 145 v~~~y~~wl~~~~~L~~N~i~~l~~~i 171 (287)
=+..+.+|+..++|.++-++..++.+|
T Consensus 18 D~i~~r~W~~qv~~f~l~~l~~~v~lI 44 (424)
T PHA03237 18 DYIHWRLWLVQVACFALAVLVLFITLI 44 (424)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788898888887777776654433
No 105
>PF10268 Tmemb_161AB: Predicted transmembrane protein 161AB; InterPro: IPR019395 This entry represents a family of conserved eukaryotic proteins. Members are putative transmembrane proteins but otherwise the function is not known.
Probab=25.39 E-value=4.2e+02 Score=27.26 Aligned_cols=72 Identities=13% Similarity=0.132 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh-hcCCChhHHHHHHHHHHhhhchhhhhhhHHhhhhhhcCc
Q 023100 138 PIHLQRLQYVAFAT---YLGLFLCLLWNIVAVTTAW-IKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTES 209 (287)
Q Consensus 138 P~~~q~~v~~~y~~---wl~~~~~L~~N~i~~l~~~-i~g~~~~~f~laily~i~g~P~sf~~WYrplY~A~r~ds 209 (287)
|.....++..-||. |++........+-...-++ .--.....+=++++|+++.+-.+.-+++.-.=.-++++.
T Consensus 88 pv~~~d~l~L~~Y~ey~WLvdFav~~~~Vyl~tE~y~~~~~~~~e~Nisv~w~lL~v~F~lk~L~sLt~~yf~s~~ 163 (486)
T PF10268_consen 88 PVTPSDVLVLRYYTEYQWLVDFAVYALVVYLFTEVYYFFVPPSTEFNISVVWCLLVVFFALKVLFSLTRLYFSSEE 163 (486)
T ss_pred cccHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44444444444443 7665444433333222121 111111234456778777777777788887667777654
No 106
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=25.35 E-value=73 Score=31.37 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=4.8
Q ss_pred ccCCCCCC
Q 023100 118 EEKNWPPF 125 (287)
Q Consensus 118 ~~~NwPpf 125 (287)
+..+|+-+
T Consensus 288 es~~~~~~ 295 (421)
T KOG3248|consen 288 ESEMWCGS 295 (421)
T ss_pred cccccccc
Confidence 34678754
No 107
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=24.98 E-value=3.2e+02 Score=25.39 Aligned_cols=77 Identities=6% Similarity=0.189 Sum_probs=0.0
Q ss_pred hHHhhhhhhcCcchhHHHHHHHHHHHHHHHhhhhccCCccccCccccchhhHHHhh-----cCCchhHHHHHHHHHHHHH
Q 023100 198 YRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVM-----GDHALVGIFYFIGFGLFCL 272 (287)
Q Consensus 198 YrplY~A~r~dss~~f~~fF~~~~~~i~f~v~~aIG~p~~f~g~G~~G~i~ai~~~-----~~~~~vgi~~~i~a~lf~~ 272 (287)
|+-.++-+.++ |=-++++.++|.++|.+|.|. ..+-|+=..=+.+ .....++.++.|+-++==+
T Consensus 143 y~k~~k~~~~g-------i~aml~Vf~LF~lvmt~g~d~----m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~ 211 (230)
T PF03904_consen 143 YQKRQKSMYKG-------IGAMLFVFMLFALVMTIGSDF----MDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYI 211 (230)
T ss_pred HHHHHHHHHHh-------HHHHHHHHHHHHHHHHhcccc----hhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHH
Q ss_pred HHHHHH-----Hhhhhhc
Q 023100 273 ESLVSI-----WVIQVCF 285 (287)
Q Consensus 273 ~~~~s~-----~~l~~Vh 285 (287)
.++..+ |.-+|.|
T Consensus 212 ~~ig~~i~l~~~~~~~~~ 229 (230)
T PF03904_consen 212 FAIGLFIYLYEWIRAKFH 229 (230)
T ss_pred HHHHHHHHHHHHHHHHhc
No 108
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.97 E-value=1.5e+02 Score=29.01 Aligned_cols=9 Identities=67% Similarity=0.848 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 023100 88 ELQAKEAEL 96 (287)
Q Consensus 88 EL~~ke~EL 96 (287)
||.|||+|+
T Consensus 334 e~qrkEee~ 342 (406)
T KOG3859|consen 334 ELQRKEEEM 342 (406)
T ss_pred HHHHhHHHH
Confidence 444444444
No 109
>PHA01750 hypothetical protein
Probab=24.93 E-value=91 Score=23.63 Aligned_cols=18 Identities=33% Similarity=0.667 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023100 87 KELQAKEAELRRREQDVR 104 (287)
Q Consensus 87 ~EL~~ke~EL~rRE~eL~ 104 (287)
++++.|.-+|+++-.|++
T Consensus 52 ~~~kikqDnl~~qv~eik 69 (75)
T PHA01750 52 EELKIKQDELSRQVEEIK 69 (75)
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 344444444444444443
No 110
>PF11831 Myb_Cef: pre-mRNA splicing factor component; InterPro: IPR021786 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 73 to 279 amino acids in length.
Probab=24.76 E-value=1.1e+02 Score=28.01 Aligned_cols=17 Identities=18% Similarity=0.485 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 023100 96 LRRREQDVRRKEEAAAR 112 (287)
Q Consensus 96 L~rRE~eL~~re~~~~~ 112 (287)
.+++++++++|.+++.+
T Consensus 116 ~~~e~~e~~rRSqvvQR 132 (231)
T PF11831_consen 116 EEEEEKELKRRSQVVQR 132 (231)
T ss_pred HHHHHHHHHHhhHHHHc
Confidence 34466677788776654
No 111
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=24.75 E-value=1.9e+02 Score=27.34 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=14.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 77 DTAADLKKKEKELQAKEAELRRREQDVRRKE 107 (287)
Q Consensus 77 ~~~~~l~~k~~EL~~ke~EL~rRE~eL~~re 107 (287)
..+.+...|...|++|+.|.+.-|+|-.+||
T Consensus 158 ~~q~~~l~kr~K~kkR~~~~q~~eeEr~~kE 188 (314)
T COG5220 158 GKQKNVLQKRMKLKKRQLERQIEEEERMNKE 188 (314)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444544455555555555443333333344
No 112
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=24.54 E-value=9.1e+02 Score=26.02 Aligned_cols=9 Identities=22% Similarity=0.165 Sum_probs=3.7
Q ss_pred HHHHHHhcC
Q 023100 106 KEEAAARAG 114 (287)
Q Consensus 106 re~~~~~~g 114 (287)
.++.+++.+
T Consensus 152 ~d~~l~~~~ 160 (742)
T TIGR01299 152 YELIIQECG 160 (742)
T ss_pred HHHHHHHcC
Confidence 334444433
No 113
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=24.27 E-value=5e+02 Score=22.94 Aligned_cols=12 Identities=0% Similarity=0.210 Sum_probs=4.8
Q ss_pred HHHHHHHHHhhc
Q 023100 161 WNIVAVTTAWIK 172 (287)
Q Consensus 161 ~N~i~~l~~~i~ 172 (287)
+.++..+..++.
T Consensus 93 f~~~~gi~~~f~ 104 (206)
T PF06570_consen 93 FSLLFGIMGFFS 104 (206)
T ss_pred HHHHHHHHHHHh
Confidence 333433344443
No 114
>PRK11637 AmiB activator; Provisional
Probab=24.23 E-value=1.6e+02 Score=29.15 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023100 84 KKEKELQAKEAELRRREQDVRRK 106 (287)
Q Consensus 84 ~k~~EL~~ke~EL~rRE~eL~~r 106 (287)
+.++++++.+++|+++++++++|
T Consensus 107 ~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 107 ELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444344333
No 115
>PLN02705 beta-amylase
Probab=24.20 E-value=83 Score=33.34 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=3.9
Q ss_pred CCCCCCccc
Q 023100 15 VNPFSDPAV 23 (287)
Q Consensus 15 ~nPF~dp~v 23 (287)
.|+-+||..
T Consensus 11 ~~~~~~~~~ 19 (681)
T PLN02705 11 TTGSQDPNL 19 (681)
T ss_pred cccccCccc
Confidence 344444433
No 116
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=24.12 E-value=76 Score=31.46 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 023100 92 KEAELRRREQDV 103 (287)
Q Consensus 92 ke~EL~rRE~eL 103 (287)
+|+|+.||++||
T Consensus 268 ~eqEiqr~~~el 279 (428)
T KOG2668|consen 268 REQEIQRRVEEL 279 (428)
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 117
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=23.93 E-value=1.2e+02 Score=24.49 Aligned_cols=35 Identities=43% Similarity=0.563 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 023100 80 ADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGI 115 (287)
Q Consensus 80 ~~l~~k~~EL~~ke~EL~rRE~eL~~re~~~~~~g~ 115 (287)
.++.+++++|+.+++++.++|.....+. .+...|.
T Consensus 49 ~e~~~~~~el~~~~~e~~~~e~~~~~~~-~l~e~GL 83 (125)
T PF14265_consen 49 EELEELEKELEELEAELARRELRSEAKK-VLAEKGL 83 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCC
Confidence 5788899999999999998887665443 3445554
No 118
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=23.92 E-value=1.3e+02 Score=25.27 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 023100 85 KEKELQAKEAELRR 98 (287)
Q Consensus 85 k~~EL~~ke~EL~r 98 (287)
+-+.|++||++|+-
T Consensus 80 ~L~~Le~r~e~Lk~ 93 (120)
T PF04521_consen 80 ELEKLERREEQLKT 93 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 119
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=23.88 E-value=1.7e+02 Score=24.74 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRRREQDVRR 105 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~rRE~eL~~ 105 (287)
++++.++++++-+||++.++.|+.
T Consensus 89 l~~k~~~l~~~i~~L~~~~~~L~~ 112 (144)
T PRK13752 89 AEHKLKDVREKMADLARMEAVLSE 112 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666655555543
No 120
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=23.84 E-value=2.3e+02 Score=29.15 Aligned_cols=50 Identities=30% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCcccccCCCCCCCccccccccccchHHHHHHHH
Q 023100 80 ADLKKKEKELQAKEAELRRREQDVRR-KEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQY 146 (287)
Q Consensus 80 ~~l~~k~~EL~~ke~EL~rRE~eL~~-re~~~~~~g~~~~~~NwPpf~P~~yhdI~~eIP~~~q~~v~ 146 (287)
+...+..+|+.|||+|+.|.+++.+. .+.++++.|+... .|..|+..+++
T Consensus 134 ~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~-----------------nir~ELl~l~~ 184 (507)
T PF05600_consen 134 AKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIKGE-----------------NIREELLELVK 184 (507)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccc-----------------hhHHHHHHHHH
No 121
>PF13025 DUF3886: Protein of unknown function (DUF3886)
Probab=23.63 E-value=2.3e+02 Score=21.56 Aligned_cols=16 Identities=44% Similarity=0.594 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAEL 96 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL 96 (287)
-|+.+.+||.+.|++-
T Consensus 21 kLka~k~eLk~~ee~r 36 (70)
T PF13025_consen 21 KLKAKKQELKAEEEKR 36 (70)
T ss_pred HHHHHHHHHhHHHHHH
Confidence 4666666666555544
No 122
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=23.44 E-value=1.1e+02 Score=25.59 Aligned_cols=43 Identities=14% Similarity=-0.028 Sum_probs=21.5
Q ss_pred cccchhhHHHhh-cCCchhHHHHHHHHHHH--HHHHHHHHHhhhhh
Q 023100 242 SLTGVLPAVDVM-GDHALVGIFYFIGFGLF--CLESLVSIWVIQVC 284 (287)
Q Consensus 242 G~~G~i~ai~~~-~~~~~vgi~~~i~a~lf--~~~~~~s~~~l~~V 284 (287)
+.+||..+-..+ ..+....++..+.+++- .++.++=+.-+.|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv~l~~~y~~k~ 138 (142)
T PF11712_consen 93 FFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEVVLYIRYLRKV 138 (142)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456777766666 44555444443333333 34555444444443
No 123
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.40 E-value=1.6e+02 Score=27.17 Aligned_cols=28 Identities=18% Similarity=0.438 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAELRRREQDVRRKEE 108 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~rRE~eL~~re~ 108 (287)
+..+..+|++..|+||++++.+|+.++.
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~ 179 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQK 179 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777777766553
No 124
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.36 E-value=1.4e+02 Score=22.92 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAEL 96 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL 96 (287)
+|+.|...|...++++
T Consensus 29 ELKEknn~l~~e~q~~ 44 (79)
T COG3074 29 ELKEKNNSLSQEVQNA 44 (79)
T ss_pred HHHHHhhHhHHHHHHH
Confidence 3444433333333333
No 125
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=23.34 E-value=1.6e+02 Score=27.23 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 023100 92 KEAELRRREQDVR 104 (287)
Q Consensus 92 ke~EL~rRE~eL~ 104 (287)
.|++.++|.++++
T Consensus 79 Lea~VEkrD~~IQ 91 (272)
T KOG4552|consen 79 LEAHVEKRDEVIQ 91 (272)
T ss_pred HHHHHHHhHHHHH
Confidence 3333333433333
No 126
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.20 E-value=1.5e+02 Score=25.84 Aligned_cols=19 Identities=16% Similarity=0.436 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023100 90 QAKEAELRRREQDVRRKEE 108 (287)
Q Consensus 90 ~~ke~EL~rRE~eL~~re~ 108 (287)
++.++|+++.++||+..|.
T Consensus 157 ~~~~~ei~~lk~el~~~~~ 175 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEK 175 (192)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3344555555555544443
No 127
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=23.13 E-value=2.1e+02 Score=21.97 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCC
Q 023100 83 KKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPP 124 (287)
Q Consensus 83 ~~k~~EL~~ke~EL~rRE~eL~~re~~~~~~g~~~~~~NwPp 124 (287)
.++-+||.++++.|++|=+-|++- ...+.+||-+
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~I--------Ldae~P~wR~ 74 (75)
T PF06667_consen 41 EQRLQELYEQAERMEERIETLERI--------LDAEHPNWRQ 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HcCCCCCccc
Confidence 445556655555555444433321 2235678853
No 128
>PHA03065 Hypothetical protein; Provisional
Probab=23.03 E-value=1.9e+02 Score=29.31 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=18.8
Q ss_pred cccccchHHHH-HHHHHHHHHHHHH
Q 023100 132 DIANEIPIHLQ-RLQYVAFATYLGL 155 (287)
Q Consensus 132 dI~~eIP~~~q-~~v~~~y~~wl~~ 155 (287)
...+||-.+.| |+.|..|+.++.-
T Consensus 118 ~~yEEikt~~~lrI~Kl~F~~fLa~ 142 (438)
T PHA03065 118 EMYEEIKTDLELKIDKLSFQLFLAN 142 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34577888888 8999999988754
No 129
>COG1008 NuoM NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]
Probab=22.86 E-value=2.1e+02 Score=29.48 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=32.2
Q ss_pred HHHhhhhccCCccccCccccchhhH----HHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 023100 225 GFCIFASVAPPIIFKGKSLTGVLPA----VDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQVCF 285 (287)
Q Consensus 225 ~f~v~~aIG~p~~f~g~G~~G~i~a----i~~~~~~~~vgi~~~i~a~lf~~~~~~s~~~l~~Vh 285 (287)
.++..+.+|.| |.+|++.= +..++.+..+.++. +..-.+.++.++|++|||.
T Consensus 376 ~~~~mAs~glP------G~sgFvgEFlil~G~f~~~~~~~~la---~~g~iltA~Y~L~~~~rv~ 431 (497)
T COG1008 376 MLFAMASLGLP------GTSGFVGEFLILLGSFQVFPWVAFLA---AFGLILTAVYMLWMYQRVF 431 (497)
T ss_pred HHHHHHhcCCC------ccchHHHHHHHHhhhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 35667789999 34455543 33344444444443 3334467899999999985
No 130
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=22.82 E-value=1.3e+02 Score=26.00 Aligned_cols=23 Identities=17% Similarity=0.103 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 023100 259 VGIFYFIGFGLFCLESLVSIWVI 281 (287)
Q Consensus 259 vgi~~~i~a~lf~~~~~~s~~~l 281 (287)
=+.+.++..++|+++.+.++..+
T Consensus 85 HSwlGl~t~~l~~lQ~~~Gf~~f 107 (153)
T cd08765 85 HSWVGLAAVILYPLQLVLGISVY 107 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888889999888886554
No 131
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=22.63 E-value=1.3e+02 Score=24.53 Aligned_cols=46 Identities=15% Similarity=0.026 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCCCccc
Q 023100 84 KKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPII 129 (287)
Q Consensus 84 ~k~~EL~~ke~EL~rRE~eL~~re~~~~~~g~~~~~~NwPpf~P~~ 129 (287)
...+-|+++.++|+++-++|++.++.+...-......+.+..||++
T Consensus 76 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~~~~~~~c~~~ 121 (124)
T TIGR02051 76 EMYELASRKLKSVQAKMADLLRIERLLEELLEQCPANKGNTSCPII 121 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccc
Confidence 3456677888888888888887766555431111223344456654
No 132
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.31 E-value=3e+02 Score=28.27 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 80 ADLKKKEKELQAKEAELRRREQDVRRK 106 (287)
Q Consensus 80 ~~l~~k~~EL~~ke~EL~rRE~eL~~r 106 (287)
+++.+.-+.|.+..++|++||..+..|
T Consensus 76 ~~l~~~N~~l~~eN~~L~~r~~~id~~ 102 (472)
T TIGR03752 76 AKLISENEALKAENERLQKREQSIDQQ 102 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 456666677777777777777776543
No 133
>PRK09458 pspB phage shock protein B; Provisional
Probab=22.13 E-value=2.3e+02 Score=21.90 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCC
Q 023100 83 KKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWP 123 (287)
Q Consensus 83 ~~k~~EL~~ke~EL~rRE~eL~~re~~~~~~g~~~~~~NwP 123 (287)
.++-+||..+++.+++|=+-|++- ...+.+||-
T Consensus 41 ~~~L~~L~~~A~rm~~RI~tLE~I--------LDae~P~WR 73 (75)
T PRK09458 41 QQRLAQLTEKAERMRERIQALEAI--------LDAEHPNWR 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HcccCCCcC
Confidence 334445555555554444333321 223567884
No 134
>PRK14231 camphor resistance protein CrcB; Provisional
Probab=22.03 E-value=4.7e+02 Score=21.77 Aligned_cols=45 Identities=9% Similarity=0.071 Sum_probs=24.4
Q ss_pred ccccchhhHHHhhc--------CC-chhHHHHHHHHHHHHHHH-HHHHHhhhhhc
Q 023100 241 KSLTGVLPAVDVMG--------DH-ALVGIFYFIGFGLFCLES-LVSIWVIQVCF 285 (287)
Q Consensus 241 ~G~~G~i~ai~~~~--------~~-~~vgi~~~i~a~lf~~~~-~~s~~~l~~Vh 285 (287)
.|+||=.++.+.+. ++ ...++.+++....-++.+ .++.++-+++.
T Consensus 67 tGflGgfTTFSTf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~l~~~~~ 121 (129)
T PRK14231 67 TGFIGAFTTFSAFSVDTIQLVQSGAWLLAVSYVLASFIGGLIMVKFGRMLSNKLL 121 (129)
T ss_pred hHHhcccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666655442 23 345677766666555543 34455555543
No 135
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=21.83 E-value=3e+02 Score=22.59 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRRREQDVRR 105 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~rRE~eL~~ 105 (287)
+.++.++|+++.++|++..+.|..
T Consensus 84 l~~~~~~l~~~i~~l~~~~~~l~~ 107 (133)
T cd04787 84 IEQRLAETERRIKELLKLRDRMQQ 107 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666665555544
No 136
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=21.81 E-value=2e+02 Score=25.67 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=9.6
Q ss_pred HHHHHHHHHHH-HHHHHHHHH
Q 023100 88 ELQAKEAELRR-REQDVRRKE 107 (287)
Q Consensus 88 EL~~ke~EL~r-RE~eL~~re 107 (287)
|=..|.+||++ |+++.+++|
T Consensus 52 ek~erdr~Ln~qr~~~~~~K~ 72 (177)
T PF09831_consen 52 EKAERDRELNRQRQAEAERKE 72 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 33345555544 555554444
No 137
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=21.77 E-value=1.6e+02 Score=24.20 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRRREQDVRRK 106 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~rRE~eL~~r 106 (287)
++++.++|+++.++|++.++.|+..
T Consensus 86 l~~~~~~l~~~i~~L~~~~~~L~~~ 110 (131)
T TIGR02043 86 VDAKLELVDEKINELTKIRRSLKKL 110 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666555543
No 138
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=21.72 E-value=2e+02 Score=24.04 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAELRRREQDVRRKEEAAA 111 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~rRE~eL~~re~~~~ 111 (287)
|..|..+.=.+||++++.+.++|+.+-+++.
T Consensus 95 E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~ 125 (134)
T PF07047_consen 95 EYWRSARKEAKKEEELQERLEELEERIEELE 125 (134)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445677777777777776655544
No 139
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=21.70 E-value=2.3e+02 Score=22.69 Aligned_cols=25 Identities=28% Similarity=0.736 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAELRRREQDVRR 105 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~rRE~eL~~ 105 (287)
+..++.+.+..++++|+.++++|+.
T Consensus 22 e~~~~~~~~~~~e~~L~~~e~~l~~ 46 (126)
T PF13863_consen 22 EIERREEQLKQREEELEKKEQELEE 46 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666665554
No 140
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=21.62 E-value=1.1e+02 Score=26.63 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRRREQDVRR 105 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~rRE~eL~~ 105 (287)
|+....|++++..||++.+.|-+.
T Consensus 72 Le~~L~EI~~lq~ElnKiqnEn~k 95 (158)
T PF03112_consen 72 LECSLMEIDSLQTELNKIQNENKK 95 (158)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444333
No 141
>PLN02380 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=21.55 E-value=3.4e+02 Score=26.84 Aligned_cols=25 Identities=4% Similarity=0.170 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAEL-RRREQDVRR 105 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL-~rRE~eL~~ 105 (287)
|+.+.++|+++|-+|+ .+|++.|++
T Consensus 259 ~iP~~~~~~~~WL~~~w~eKD~lle~ 284 (376)
T PLN02380 259 ELPETDDGIAQWCKDVFVAKDALLDK 284 (376)
T ss_pred cCcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667888888877 556766654
No 142
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=21.52 E-value=1.6e+02 Score=24.57 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRRREQDVRRK 106 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~rRE~eL~~r 106 (287)
+.++.++|+++-++|++.++.|++.
T Consensus 86 l~~~~~~l~~~i~~L~~~~~~L~~~ 110 (140)
T PRK09514 86 VDEKLAEVEAKIAELQHMRRSLQRL 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666555543
No 143
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=21.40 E-value=3.7e+02 Score=20.31 Aligned_cols=6 Identities=17% Similarity=0.495 Sum_probs=2.2
Q ss_pred HHHHHH
Q 023100 147 VAFATY 152 (287)
Q Consensus 147 ~~y~~w 152 (287)
.-|..|
T Consensus 64 ~~~k~~ 69 (89)
T PF00957_consen 64 RNYKLY 69 (89)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 144
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=21.39 E-value=2.5e+02 Score=23.92 Aligned_cols=20 Identities=25% Similarity=0.592 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHhhhchhhhh
Q 023100 177 KIWFLAIIYFIAGVPGAYVL 196 (287)
Q Consensus 177 ~~f~laily~i~g~P~sf~~ 196 (287)
..|+++.-.+|+|+|+++-+
T Consensus 93 a~Wi~tTSallLgvPl~l~i 112 (137)
T PF04281_consen 93 ALWIVTTSALLLGVPLALEI 112 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 36888888899999998754
No 145
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=21.36 E-value=2.1e+02 Score=25.38 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAELRRREQDVRRKEEA 109 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~rRE~eL~~re~~ 109 (287)
|+.+-..++++-..||+.||.+.+.++..
T Consensus 103 dl~klt~~~~~l~~eL~~ke~~~~~ee~~ 131 (182)
T PF15035_consen 103 DLQKLTQDWERLRDELEQKEAEWREEEEN 131 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666777777776665543
No 146
>PF08467 Luteo_P1-P2: Luteovirus RNA polymerase P1-P2/replicase; InterPro: IPR013674 This domain is found in RNA-dependent RNA polymerase P1-P2 fusion/replicase proteins in plant Luteoviruses. ; GO: 0003968 RNA-directed RNA polymerase activity
Probab=21.06 E-value=1.6e+02 Score=28.63 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=7.9
Q ss_pred ccchHHHHHHHHHH
Q 023100 76 LDTAADLKKKEKEL 89 (287)
Q Consensus 76 ~~~~~~l~~k~~EL 89 (287)
-+.+.|.+.=|.||
T Consensus 54 yg~M~diEdFE~eL 67 (361)
T PF08467_consen 54 YGHMYDIEDFEAEL 67 (361)
T ss_pred HHhhcCHHHHHHHH
Confidence 34555666566665
No 147
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=21.05 E-value=3.9e+02 Score=20.48 Aligned_cols=23 Identities=22% Similarity=0.654 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023100 145 QYVAFATYLGLFLCLLWNIVAVT 167 (287)
Q Consensus 145 v~~~y~~wl~~~~~L~~N~i~~l 167 (287)
.-++|.+=+++.+|+++|.+.+.
T Consensus 50 IGILYGlVIGlil~~i~~~l~~~ 72 (75)
T COG4064 50 IGILYGLVIGLILCMIYILLGVA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999998764
No 148
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=21.02 E-value=5.9e+02 Score=22.55 Aligned_cols=17 Identities=12% Similarity=0.172 Sum_probs=10.2
Q ss_pred HHHHHhhhchhhhhhhH
Q 023100 183 IIYFIAGVPGAYVLWYR 199 (287)
Q Consensus 183 ily~i~g~P~sf~~WYr 199 (287)
.+++++.+-=++++|.+
T Consensus 109 ~~~~~~~iid~~~l~r~ 125 (170)
T PF11241_consen 109 YVLLLLVIIDGVILGRR 125 (170)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445556667777754
No 149
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=20.95 E-value=2.3e+02 Score=19.83 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAELRRREQDVRR 105 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~rRE~eL~~ 105 (287)
..+.|-++++..-+||++|.+.|..
T Consensus 16 ~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 16 NIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777766555543
No 150
>PRK00736 hypothetical protein; Provisional
Probab=20.75 E-value=1.8e+02 Score=21.57 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRR 98 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~r 98 (287)
+.+.++++.+.+++|+.
T Consensus 28 v~~Qq~~i~~L~~ql~~ 44 (68)
T PRK00736 28 LAEQWKTVEQMRKKLDA 44 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555544444444
No 151
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=20.75 E-value=18 Score=30.15 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=1.7
Q ss_pred HHHHHHHHHhhhchhhhhhh---HHhhhhhhcC
Q 023100 179 WFLAIIYFIAGVPGAYVLWY---RPLYRAFRTE 208 (287)
Q Consensus 179 f~laily~i~g~P~sf~~WY---rplY~A~r~d 208 (287)
.|.+|+-+|+++-+.+-||| |.=||.+|+.
T Consensus 27 aGIGiL~VILgiLLliGCWYckRRSGYk~L~~k 59 (118)
T PF14991_consen 27 AGIGILIVILGILLLIGCWYCKRRSGYKTLRDK 59 (118)
T ss_dssp -SSS-----------------------------
T ss_pred ccceeHHHHHHHHHHHhheeeeecchhhhhhhc
Confidence 45566666777778888999 5678888754
No 152
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.67 E-value=1.7e+02 Score=31.64 Aligned_cols=11 Identities=9% Similarity=0.172 Sum_probs=5.6
Q ss_pred CccccchhhHH
Q 023100 240 GKSLTGVLPAV 250 (287)
Q Consensus 240 g~G~~G~i~ai 250 (287)
++|..|-|..+
T Consensus 647 ~~~~~g~v~~i 657 (782)
T PRK00409 647 SLGQKGEVLSI 657 (782)
T ss_pred cCCceEEEEEE
Confidence 45555555544
No 153
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=20.63 E-value=2.1e+02 Score=21.67 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023100 87 KELQAKEAELRRREQDVRR 105 (287)
Q Consensus 87 ~EL~~ke~EL~rRE~eL~~ 105 (287)
++|+.|.++|+..-.+.++
T Consensus 34 ~~L~~kt~~L~~~a~~F~k 52 (89)
T PF00957_consen 34 EELEDKTEELSDNAKQFKK 52 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3444444444443333333
No 154
>PRK00295 hypothetical protein; Provisional
Probab=20.61 E-value=2e+02 Score=21.41 Aligned_cols=18 Identities=6% Similarity=0.204 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRRR 99 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~rR 99 (287)
+.+.++++.+.+++|+..
T Consensus 28 v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 28 LVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555445444443
No 155
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=20.58 E-value=2.1e+02 Score=26.33 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAELRRREQ 101 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~rRE~ 101 (287)
++.++-++|+++-++|+++..
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 73 DLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 156
>cd00225 API3 Ascaris pepsin inhibitor-3 (API3); protein inhibitor that reversibly inhibits aspartic proteinase cathepsin E, and gastric enzymes pepsin and gastricsin.
Probab=20.58 E-value=2.2e+02 Score=24.83 Aligned_cols=19 Identities=11% Similarity=0.279 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 023100 79 AADLKKKEKELQAKEAELR 97 (287)
Q Consensus 79 ~~~l~~k~~EL~~ke~EL~ 97 (287)
+.++...++|..+..+|++
T Consensus 36 q~el~~y~~d~~~yK~~~k 54 (159)
T cd00225 36 QQELAQYVEDVADYKEEVK 54 (159)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577777777777776664
No 157
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=20.48 E-value=4e+02 Score=25.64 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=10.2
Q ss_pred cccccchHHHHHHHHHH
Q 023100 132 DIANEIPIHLQRLQYVA 148 (287)
Q Consensus 132 dI~~eIP~~~q~~v~~~ 148 (287)
|+ ++|-++..|+++.+
T Consensus 296 dl-~~I~~QslrL~~~~ 311 (340)
T PF12794_consen 296 DL-EQISQQSLRLLRSI 311 (340)
T ss_pred CH-HHHHHHHHHHHHHH
Confidence 44 35667777777664
No 158
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=20.48 E-value=7.8e+02 Score=23.78 Aligned_cols=58 Identities=9% Similarity=0.152 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhchhhhhhhHHhhhhhhc
Q 023100 144 LQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRT 207 (287)
Q Consensus 144 ~v~~~y~~wl~~~~~L~~N~i~~l~~~i~g~~~~~f~laily~i~g~P~sf~~WYrplY~A~r~ 207 (287)
+.-+++.-|.......+.+++-++ +++.++...++.-++ ..+.+..++.|+ +||..++
T Consensus 73 L~alllGP~~A~la~~ivLllQal--lfg~GGl~alGaN~l--~ma~~~~~v~y~--iyr~~~~ 130 (322)
T PRK07331 73 LIAILLGPWAACLAVTVALAIQAL--LFGDGGILAFGANCF--NMAFIMPFVGYY--IYKFIKK 130 (322)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH--HHhCchHHHHHHHHH--HHHHHHHHHHHH--HHHHHHh
Confidence 445556656555554555555432 223344334444444 444444555553 5555543
No 159
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.39 E-value=1.1e+02 Score=31.36 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023100 90 QAKEAELRRREQDVRRKE 107 (287)
Q Consensus 90 ~~ke~EL~rRE~eL~~re 107 (287)
..|-+|+++|+.||.+|=
T Consensus 375 ~~KI~~~k~r~~~Ls~Ri 392 (508)
T KOG3091|consen 375 VAKIEEAKNRHVELSHRI 392 (508)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455666666665543
No 160
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=20.26 E-value=2.2e+02 Score=17.40 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023100 86 EKELQAKEAELRRREQDV 103 (287)
Q Consensus 86 ~~EL~~ke~EL~rRE~eL 103 (287)
|..|.+-|+||.|-.++.
T Consensus 4 qakla~YqaeLa~vqk~n 21 (25)
T PF06696_consen 4 QAKLAQYQAELARVQKAN 21 (25)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344555555665544443
No 161
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=20.25 E-value=2.2e+02 Score=27.06 Aligned_cols=28 Identities=29% Similarity=0.560 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023100 85 KEKELQAKEAELRRREQDVRRKEEAAAR 112 (287)
Q Consensus 85 k~~EL~~ke~EL~rRE~eL~~re~~~~~ 112 (287)
..+.|+.+++||+..+.+|++.|.+++.
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e 225 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKE 225 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566777667777777665543
No 162
>PRK04325 hypothetical protein; Provisional
Probab=20.21 E-value=2.2e+02 Score=21.50 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 023100 83 KKKEKELQAKEAELRR 98 (287)
Q Consensus 83 ~~k~~EL~~ke~EL~r 98 (287)
.+.++++.+.+++|+.
T Consensus 33 ~~Qq~~I~~L~~ql~~ 48 (74)
T PRK04325 33 ARQQQTLDLLQAQLRL 48 (74)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 163
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=20.19 E-value=74 Score=26.02 Aligned_cols=9 Identities=56% Similarity=0.645 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 023100 88 ELQAKEAEL 96 (287)
Q Consensus 88 EL~~ke~EL 96 (287)
||++|=+||
T Consensus 82 ~lqkRle~l 90 (104)
T PF11460_consen 82 ELQKRLEEL 90 (104)
T ss_pred HHHHHHHhC
Confidence 444444443
No 164
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=20.11 E-value=1.9e+02 Score=23.93 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-cCCChhHHHHHHHHHHhhhchhhhhhhHHhhhhhhcCcchhHHHHHHHHHHHHHHHhh
Q 023100 151 TYLGLFLCLLWNIVAVTTAWI-KGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIF 229 (287)
Q Consensus 151 ~wl~~~~~L~~N~i~~l~~~i-~g~~~~~f~laily~i~g~P~sf~~WYrplY~A~r~dss~~f~~fF~~~~~~i~f~v~ 229 (287)
.|+.+.+.-+..+++.+..-- .+.. .+.-. +..+.+.-+||.+| .+|+|+= =+.++|.+|
T Consensus 3 ~wl~L~~Ai~~Ev~~t~~LK~s~g~~--~~~~~-~~~i~~~~~sf~~l----s~al~~l------------plsiAYavw 63 (120)
T PRK10452 3 YWILLALAIATEITGTLSMKWASVSE--GNGGF-ILMLVMISLSYIFL----SFAVKKI------------ALGVAYALW 63 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccCC--CcHHH-HHHHHHHHHHHHHH----HHHHhhC------------CchhHHHHH
Confidence 366667777788887654321 2221 11111 22344555666665 4455531 144566666
Q ss_pred hhcc
Q 023100 230 ASVA 233 (287)
Q Consensus 230 ~aIG 233 (287)
..+|
T Consensus 64 ~GiG 67 (120)
T PRK10452 64 EGIG 67 (120)
T ss_pred HHHH
Confidence 5554
No 165
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=20.10 E-value=1.9e+02 Score=30.59 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAELRRREQDVRRKE 107 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~rRE~eL~~re 107 (287)
+++++.+||.++|.+|+..++|+.+.+
T Consensus 32 ~v~~kd~elr~rqt~~~~l~~~~~~~~ 58 (732)
T KOG0614|consen 32 AVQRKDAELRQRQTILEELIKEISKLE 58 (732)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 556666666666666655555554333
Done!