Query 023100
Match_columns 287
No_of_seqs 200 out of 399
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 16:21:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmd_A CGMP dependent protein 92.0 0.31 1E-05 36.2 5.6 32 81-112 27-58 (72)
2 3nmd_A CGMP dependent protein 81.6 3 0.0001 30.8 5.5 30 81-110 34-63 (72)
3 2oqq_A Transcription factor HY 75.9 7.6 0.00026 25.7 5.5 26 80-105 6-31 (42)
4 1lq7_A Alpha3W; three helix bu 71.4 8.6 0.00029 26.9 5.2 34 78-111 26-65 (67)
5 2oqq_A Transcription factor HY 66.0 10 0.00034 25.1 4.4 27 86-112 5-31 (42)
6 1zxa_A CGMP-dependent protein 63.0 16 0.00054 26.5 5.4 33 80-112 18-50 (67)
7 3a7o_A Autophagy protein 16; c 61.5 12 0.00042 27.5 4.6 32 81-112 19-50 (75)
8 3he4_B Synzip5; heterodimeric 60.9 14 0.00047 24.1 4.3 25 79-103 5-29 (46)
9 4egx_A Kinesin-like protein KI 49.8 28 0.00094 29.5 5.7 27 92-118 28-54 (184)
10 1k1f_A Breakpoint cluster regi 47.6 25 0.00086 25.5 4.3 24 82-105 28-51 (72)
11 2qdq_A Talin-1; dimerisation d 44.9 34 0.0012 23.4 4.4 21 85-105 13-33 (50)
12 3he4_B Synzip5; heterodimeric 44.4 63 0.0022 21.0 5.5 22 87-108 6-27 (46)
13 2do5_A Splicing factor 3B subu 44.3 29 0.00099 23.9 3.9 25 99-123 31-55 (58)
14 1zxa_A CGMP-dependent protein 43.5 25 0.00085 25.5 3.8 26 85-110 16-41 (67)
15 3he5_B Synzip2; heterodimeric 42.5 47 0.0016 22.1 4.6 20 82-101 8-27 (52)
16 2b5u_A Colicin E3; high resolu 39.3 30 0.001 34.2 4.7 19 78-96 292-310 (551)
17 2lw1_A ABC transporter ATP-bin 39.2 51 0.0017 24.4 5.1 29 84-112 19-47 (89)
18 2qdq_A Talin-1; dimerisation d 39.0 44 0.0015 22.8 4.2 18 86-104 8-25 (50)
19 1g6u_A Domain swapped dimer; d 35.8 59 0.002 21.3 4.3 19 87-105 20-38 (48)
20 2js5_A Uncharacterized protein 35.4 39 0.0013 24.7 3.7 21 130-150 26-46 (71)
21 2q2f_A Selenoprotein S; anti-p 34.8 78 0.0027 24.0 5.4 22 82-103 53-74 (89)
22 3t97_B Nuclear pore complex pr 33.7 63 0.0021 23.2 4.5 28 80-107 20-47 (65)
23 1t6f_A Geminin; coiled-coil, c 32.9 73 0.0025 20.3 4.2 18 81-98 8-25 (37)
24 2yy0_A C-MYC-binding protein; 32.4 71 0.0024 21.8 4.5 27 80-106 22-48 (53)
25 3qh9_A Liprin-beta-2; coiled-c 32.1 37 0.0013 25.4 3.2 19 87-105 54-72 (81)
26 2pnv_A Small conductance calci 32.0 77 0.0026 20.9 4.4 25 80-104 12-36 (43)
27 2f95_B Sensory rhodopsin II tr 31.9 9.8 0.00033 29.7 0.0 8 117-124 156-163 (163)
28 1a92_A Delta antigen; leucine 31.4 64 0.0022 21.9 4.0 15 94-108 21-35 (50)
29 3nr7_A DNA-binding protein H-N 30.9 78 0.0027 23.8 4.9 27 90-116 48-74 (86)
30 1y66_A Engrailed homeodomain; 30.6 52 0.0018 21.9 3.4 18 87-104 6-23 (52)
31 3p01_A Two-component response 30.5 34 0.0011 27.1 3.1 21 228-249 130-150 (184)
32 2oxj_A Hybrid alpha/beta pepti 27.6 1.2E+02 0.004 19.1 4.5 25 79-103 3-27 (34)
33 3csx_A Putative uncharacterize 27.0 30 0.001 25.9 2.0 23 130-152 38-60 (81)
34 3ktp_B Trinucleotide repeat-co 26.0 23 0.00078 20.3 0.8 11 119-129 3-14 (22)
35 4g3b_A Alpha4F3D; alpha helix, 25.5 1E+02 0.0035 17.8 3.6 17 85-101 6-22 (26)
36 3a7o_A Autophagy protein 16; c 24.4 1.6E+02 0.0054 21.6 5.3 21 88-108 19-39 (75)
37 1q08_A Zn(II)-responsive regul 24.2 88 0.003 22.8 4.2 26 81-106 43-68 (99)
38 1u2m_A Histone-like protein HL 23.4 23 0.0008 28.1 0.8 17 81-97 61-77 (143)
39 1a93_A Coiled coil, LZ, MYC pr 22.6 1.3E+02 0.0043 18.9 3.9 24 83-106 6-29 (34)
40 2v4h_A NF-kappa-B essential mo 21.9 1.4E+02 0.0049 23.5 5.1 26 82-107 33-58 (110)
41 1kd8_B GABH BLL, GCN4 acid bas 20.6 1.7E+02 0.0059 18.5 4.5 21 79-99 3-23 (36)
42 3p01_A Two-component response 20.3 85 0.0029 24.6 3.6 16 80-95 13-28 (184)
43 1abz_A Alpha-T-alpha, ATA; de 20.1 1.5E+02 0.0051 18.7 3.9 10 95-104 25-34 (40)
44 3fd9_A Uncharacterized protein 20.1 94 0.0032 27.9 4.1 21 80-100 159-179 (256)
No 1
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=92.00 E-value=0.31 Score=36.17 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023100 81 DLKKKEKELQAKEAELRRREQDVRRKEEAAAR 112 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~rRE~eL~~re~~~~~ 112 (287)
.|++|.+||.+|++.++++|.+|+.++.++++
T Consensus 27 ~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~ 58 (72)
T 3nmd_A 27 ALQEKIEELRQRDALIDELELELDQKDELIQM 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777776665543
No 2
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=81.58 E-value=3 Score=30.79 Aligned_cols=30 Identities=13% Similarity=0.348 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAELRRREQDVRRKEEAA 110 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~rRE~eL~~re~~~ 110 (287)
++..|++.++.+|.+|++||.+++.-..++
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554433333
No 3
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=75.92 E-value=7.6 Score=25.67 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 80 ADLKKKEKELQAKEAELRRREQDVRR 105 (287)
Q Consensus 80 ~~l~~k~~EL~~ke~EL~rRE~eL~~ 105 (287)
.||+.|.++|+.|-+||+.|=.-|++
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888888877666653
No 4
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=71.42 E-value=8.6 Score=26.92 Aligned_cols=34 Identities=38% Similarity=0.521 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 023100 78 TAADLKKKEKELQAKEAEL------RRREQDVRRKEEAAA 111 (287)
Q Consensus 78 ~~~~l~~k~~EL~~ke~EL------~rRE~eL~~re~~~~ 111 (287)
+-++|+++=+||.+|-+|| ++-|+|.+..|+++.
T Consensus 26 rieelkkkweelkkkieelggggevkkveeevkkleeeik 65 (67)
T 1lq7_A 26 RIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIK 65 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 5578999999999998887 567777877776553
No 5
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=66.03 E-value=10 Score=25.10 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023100 86 EKELQAKEAELRRREQDVRRKEEAAAR 112 (287)
Q Consensus 86 ~~EL~~ke~EL~rRE~eL~~re~~~~~ 112 (287)
-.||+.|+.+|+.|-.||..|-..+.+
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999988877654443
No 6
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=63.03 E-value=16 Score=26.54 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023100 80 ADLKKKEKELQAKEAELRRREQDVRRKEEAAAR 112 (287)
Q Consensus 80 ~~l~~k~~EL~~ke~EL~rRE~eL~~re~~~~~ 112 (287)
+.++.|++.....|.+|+.+++|+++...++.+
T Consensus 18 ~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 18 KILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778887888888888888888775554444
No 7
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=61.51 E-value=12 Score=27.47 Aligned_cols=32 Identities=34% Similarity=0.473 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023100 81 DLKKKEKELQAKEAELRRREQDVRRKEEAAAR 112 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~rRE~eL~~re~~~~~ 112 (287)
.+..-++||..||+|+.+.++.++-|.....+
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~Er 50 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTER 50 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 35667778888888888877777665544443
No 8
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=60.94 E-value=14 Score=24.15 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 79 AADLKKKEKELQAKEAELRRREQDV 103 (287)
Q Consensus 79 ~~~l~~k~~EL~~ke~EL~rRE~eL 103 (287)
.++|+.--+||+.|.+||+...+.|
T Consensus 5 vkelknyiqeleernaelknlkehl 29 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 3466666667777777776644444
No 9
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=49.84 E-value=28 Score=29.54 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccc
Q 023100 92 KEAELRRREQDVRRKEEAAARAGIVLE 118 (287)
Q Consensus 92 ke~EL~rRE~eL~~re~~~~~~g~~~~ 118 (287)
||+.|++-|+..+.|+.++++.|+..+
T Consensus 28 WeeKl~~te~~~~e~~~~l~~~gi~~~ 54 (184)
T 4egx_A 28 WEEKLRRTEAIRMEREALLAEMGVAMR 54 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchh
Confidence 455555444444567778888876543
No 10
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=47.62 E-value=25 Score=25.52 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRRREQDVRR 105 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~rRE~eL~~ 105 (287)
+..-|.||++..+-++|.|+|+.+
T Consensus 28 vgdiEqeLe~Ck~sIrrLE~evn~ 51 (72)
T 1k1f_A 28 VGDIEQELERAKASIRRLEQEVNQ 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhH
Confidence 444677888888888888888853
No 11
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=44.90 E-value=34 Score=23.38 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023100 85 KEKELQAKEAELRRREQDVRR 105 (287)
Q Consensus 85 k~~EL~~ke~EL~rRE~eL~~ 105 (287)
.++++-|+|+||++-.+.|..
T Consensus 13 Aqe~iLr~ErELEeAr~~La~ 33 (50)
T 2qdq_A 13 AQEEMLRKERELEEARKKLAQ 33 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666655444543
No 12
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=44.43 E-value=63 Score=20.99 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023100 87 KELQAKEAELRRREQDVRRKEE 108 (287)
Q Consensus 87 ~EL~~ke~EL~rRE~eL~~re~ 108 (287)
+||+.--+||++|.+||+...+
T Consensus 6 kelknyiqeleernaelknlke 27 (46)
T 3he4_B 6 KELKNYIQELEERNAELKNLKE 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhHHH
Confidence 5666677777777777766443
No 13
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.27 E-value=29 Score=23.95 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhcCcccccCCCC
Q 023100 99 REQDVRRKEEAAARAGIVLEEKNWP 123 (287)
Q Consensus 99 RE~eL~~re~~~~~~g~~~~~~NwP 123 (287)
||+-+.|.+--.++.|....++|-|
T Consensus 31 REElvdRLk~Y~~QtGi~lnkP~~~ 55 (58)
T 2do5_A 31 REELVERLQSYTRQTGIVLNRPSGP 55 (58)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCTTCS
T ss_pred HHHHHHHHHHHhhccceeecCCCCC
Confidence 4443344333334557766666655
No 14
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=43.54 E-value=25 Score=25.46 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 85 KEKELQAKEAELRRREQDVRRKEEAA 110 (287)
Q Consensus 85 k~~EL~~ke~EL~rRE~eL~~re~~~ 110 (287)
.++.+..|++.+++.|.+|..+++++
T Consensus 16 ~~~~i~~Kde~I~eLE~~L~~kd~eI 41 (67)
T 1zxa_A 16 FAKILMLKEERIKELEKRLSEKEEEI 41 (67)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444433
No 15
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=42.45 E-value=47 Score=22.13 Aligned_cols=20 Identities=40% Similarity=0.542 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRRREQ 101 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~rRE~ 101 (287)
|.+|-..|++-.-.|+|-|+
T Consensus 8 lrkkiarlkkdnlqlerdeq 27 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQ 27 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHh
Confidence 33444444333333333333
No 16
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=39.27 E-value=30 Score=34.24 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=15.1
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 023100 78 TAADLKKKEKELQAKEAEL 96 (287)
Q Consensus 78 ~~~~l~~k~~EL~~ke~EL 96 (287)
+.+++++||||-+|+++|-
T Consensus 292 t~~elkqrqeee~r~~qew 310 (551)
T 2b5u_A 292 SPDQVKQRQDEENRRQQEW 310 (551)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 5578888888888888876
No 17
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=39.23 E-value=51 Score=24.44 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023100 84 KKEKELQAKEAELRRREQDVRRKEEAAAR 112 (287)
Q Consensus 84 ~k~~EL~~ke~EL~rRE~eL~~re~~~~~ 112 (287)
+.++||+..++++++.|+++...+..++.
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45678888899999888888887776654
No 18
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=39.04 E-value=44 Score=22.82 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023100 86 EKELQAKEAELRRREQDVR 104 (287)
Q Consensus 86 ~~EL~~ke~EL~rRE~eL~ 104 (287)
.+|++++|+-|+ +|+||.
T Consensus 8 aqEi~Aqe~iLr-~ErELE 25 (50)
T 2qdq_A 8 AQIIAAQEEMLR-KERELE 25 (50)
T ss_dssp HHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHH
Confidence 345555544443 455553
No 19
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=35.78 E-value=59 Score=21.29 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023100 87 KELQAKEAELRRREQDVRR 105 (287)
Q Consensus 87 ~EL~~ke~EL~rRE~eL~~ 105 (287)
+||.+.|.||+..|+.|..
T Consensus 20 eelaaleselqalekklaa 38 (48)
T 1g6u_A 20 EELAALESELQALEKKLAA 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666666666666665543
No 20
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=35.36 E-value=39 Score=24.73 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=12.5
Q ss_pred cccccccchHHHHHHHHHHHH
Q 023100 130 HHDIANEIPIHLQRLQYVAFA 150 (287)
Q Consensus 130 yhdI~~eIP~~~q~~v~~~y~ 150 (287)
-||+++|+|...+++.-++=-
T Consensus 26 LHDLaEdLP~~w~~i~~vA~~ 46 (71)
T 2js5_A 26 LHDLAEDLPTGWNRIMEVAEK 46 (71)
T ss_dssp HHHHHHSTTTSGGGHHHHHHH
T ss_pred HHHHhccchhhHHHHHHHHHH
Confidence 467777777666655544433
No 21
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=34.81 E-value=78 Score=24.01 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRRREQDV 103 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~rRE~eL 103 (287)
-.+-|+||++++++-+.+.+++
T Consensus 53 RlRMQEeldAqAe~~keKQkql 74 (89)
T 2q2f_A 53 RLKMQEELNAQVEKHKEKLKQL 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888887776655544
No 22
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=33.69 E-value=63 Score=23.22 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 80 ADLKKKEKELQAKEAELRRREQDVRRKE 107 (287)
Q Consensus 80 ~~l~~k~~EL~~ke~EL~rRE~eL~~re 107 (287)
.||++++....+|-+|.+||-.||..|-
T Consensus 20 ~eLq~~~~~~~aki~e~krkl~eLsHRi 47 (65)
T 3t97_B 20 SELQKNQTTTMAKIAQYKRKLMDLSHRT 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4677777777777777777777776653
No 23
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=32.93 E-value=73 Score=20.29 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAELRR 98 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~r 98 (287)
+-.+-.+|++.|.+|+.+
T Consensus 8 ENekLhk~ie~KdeeIa~ 25 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIAR 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566777777777766
No 24
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.42 E-value=71 Score=21.76 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 80 ADLKKKEKELQAKEAELRRREQDVRRK 106 (287)
Q Consensus 80 ~~l~~k~~EL~~ke~EL~rRE~eL~~r 106 (287)
+.|++.-+||++|=++|.++-+|+++|
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666677777777777777777654
No 25
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=32.14 E-value=37 Score=25.44 Aligned_cols=19 Identities=11% Similarity=0.370 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023100 87 KELQAKEAELRRREQDVRR 105 (287)
Q Consensus 87 ~EL~~ke~EL~rRE~eL~~ 105 (287)
+||....+.|+.++.|+++
T Consensus 54 ~El~~Lq~qLe~kd~ei~r 72 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIER 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 4444444444445555444
No 26
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=31.96 E-value=77 Score=20.86 Aligned_cols=25 Identities=12% Similarity=0.363 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 80 ADLKKKEKELQAKEAELRRREQDVR 104 (287)
Q Consensus 80 ~~l~~k~~EL~~ke~EL~rRE~eL~ 104 (287)
.|+..|+++|++|-.-|+.|=..|+
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4777788888777666665554444
No 27
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=31.85 E-value=9.8 Score=29.67 Aligned_cols=8 Identities=0% Similarity=-0.101 Sum_probs=0.0
Q ss_pred cccCCCCC
Q 023100 117 LEEKNWPP 124 (287)
Q Consensus 117 ~~~~NwPp 124 (287)
+.+|+.||
T Consensus 156 ~~~~~~~~ 163 (163)
T 2f95_B 156 SHHHHHHH 163 (163)
T ss_dssp --------
T ss_pred CCccccCC
Confidence 34555554
No 28
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=31.42 E-value=64 Score=21.91 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 023100 94 AELRRREQDVRRKEE 108 (287)
Q Consensus 94 ~EL~rRE~eL~~re~ 108 (287)
++|++-.+++++.|+
T Consensus 21 r~lrk~kk~iKklEd 35 (50)
T 1a92_A 21 RDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhc
Confidence 344433334555443
No 29
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=30.91 E-value=78 Score=23.76 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 023100 90 QAKEAELRRREQDVRRKEEAAARAGIV 116 (287)
Q Consensus 90 ~~ke~EL~rRE~eL~~re~~~~~~g~~ 116 (287)
++.+++.+.|++.++.--+.+...|+.
T Consensus 48 ~~~~~~~~er~~Kl~~~~e~l~~~GI~ 74 (86)
T 3nr7_A 48 SAAAAEVEERTRKLQQYREMLIADGID 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 334444444555554433345555654
No 30
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=30.59 E-value=52 Score=21.87 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023100 87 KELQAKEAELRRREQDVR 104 (287)
Q Consensus 87 ~EL~~ke~EL~rRE~eL~ 104 (287)
+|.+||-.|..||-+|+.
T Consensus 6 eeverklkefvrrhqeit 23 (52)
T 1y66_A 6 EEVERKLKEFVRRHQEIT 23 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555543
No 31
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=30.50 E-value=34 Score=27.10 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=12.4
Q ss_pred hhhhccCCccccCccccchhhH
Q 023100 228 IFASVAPPIIFKGKSLTGVLPA 249 (287)
Q Consensus 228 v~~aIG~p~~f~g~G~~G~i~a 249 (287)
+-..+++|+..+| ...|.+..
T Consensus 130 ~~s~l~vPL~~~~-~~~GvL~l 150 (184)
T 3p01_A 130 IQSHVVIPITYRN-EMLGVLSL 150 (184)
T ss_dssp CCEEEEEEEEETT-EEEEEEEE
T ss_pred ccEEEEEEEEECC-EEEEEEEe
Confidence 3456777865433 45677665
No 32
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=27.63 E-value=1.2e+02 Score=19.07 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 79 AADLKKKEKELQAKEAELRRREQDV 103 (287)
Q Consensus 79 ~~~l~~k~~EL~~ke~EL~rRE~eL 103 (287)
+..|+.|-+||..+..||+..-+.|
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4457778888877777776543333
No 33
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=27.05 E-value=30 Score=25.94 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=14.2
Q ss_pred cccccccchHHHHHHHHHHHHHH
Q 023100 130 HHDIANEIPIHLQRLQYVAFATY 152 (287)
Q Consensus 130 yhdI~~eIP~~~q~~v~~~y~~w 152 (287)
.||+++|+|...+++.-++=-.+
T Consensus 38 LHDLaEdLP~~w~~i~~vA~~ty 60 (81)
T 3csx_A 38 LHDLAEGLPTDYENLVETAEKTY 60 (81)
T ss_dssp HHHHHHHTTTTGGGHHHHHHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHH
Confidence 47777777777776654443333
No 34
>3ktp_B Trinucleotide repeat-containing gene 6C protein; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding; 1.50A {Homo sapiens}
Probab=25.99 E-value=23 Score=20.30 Aligned_cols=11 Identities=55% Similarity=1.343 Sum_probs=7.2
Q ss_pred cCCCCC-CCccc
Q 023100 119 EKNWPP-FFPII 129 (287)
Q Consensus 119 ~~NwPp-f~P~~ 129 (287)
..|||| |.|-+
T Consensus 3 ~~sWpPef~pg~ 14 (22)
T 3ktp_B 3 SINWPPEFHPGV 14 (26)
T ss_pred cccCCcccccCC
Confidence 368999 54543
No 35
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=25.46 E-value=1e+02 Score=17.79 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023100 85 KEKELQAKEAELRRREQ 101 (287)
Q Consensus 85 k~~EL~~ke~EL~rRE~ 101 (287)
.-+||+..++.|++..+
T Consensus 6 ~ykeled~qerlrk~rk 22 (26)
T 4g3b_A 6 XYKELEDXQERLRKXRK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566666665554433
No 36
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=24.41 E-value=1.6e+02 Score=21.56 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023100 88 ELQAKEAELRRREQDVRRKEE 108 (287)
Q Consensus 88 EL~~ke~EL~rRE~eL~~re~ 108 (287)
-+.+..+||+.+|+|+++.++
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e 39 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKE 39 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555443
No 37
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=24.20 E-value=88 Score=22.77 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAELRRREQDVRRK 106 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~rRE~eL~~r 106 (287)
-+.++.++|+++-++|++..+.|+..
T Consensus 43 ~L~~~~~~l~~~i~~L~~~~~~L~~~ 68 (99)
T 1q08_A 43 IVQERLQEVEARIAELQSMQRSLQRL 68 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666543
No 38
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=23.39 E-value=23 Score=28.10 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023100 81 DLKKKEKELQAKEAELR 97 (287)
Q Consensus 81 ~l~~k~~EL~~ke~EL~ 97 (287)
+..++++||.+++++++
T Consensus 61 ~~~~~~~el~~~~~~~q 77 (143)
T 1u2m_A 61 DRTKLEKDVMAQRQTFA 77 (143)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555553
No 39
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=22.62 E-value=1.3e+02 Score=18.94 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 83 KKKEKELQAKEAELRRREQDVRRK 106 (287)
Q Consensus 83 ~~k~~EL~~ke~EL~rRE~eL~~r 106 (287)
...|..|-.-.+.|++|.+.|.+|
T Consensus 6 q~dE~kLl~ekE~l~~r~eqL~~k 29 (34)
T 1a93_A 6 QAEEQKLISEEDLLRKRREQLKHK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333444455555543
No 40
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=21.85 E-value=1.4e+02 Score=23.47 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023100 82 LKKKEKELQAKEAELRRREQDVRRKE 107 (287)
Q Consensus 82 l~~k~~EL~~ke~EL~rRE~eL~~re 107 (287)
|...|+-|..|..++++.++++.+++
T Consensus 33 L~~AEeaL~~Kq~~idelk~ei~q~~ 58 (110)
T 2v4h_A 33 LQQAEEALVAKQELIDKLKEEAEQHK 58 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555554554433
No 41
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=20.59 E-value=1.7e+02 Score=18.51 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 023100 79 AADLKKKEKELQAKEAELRRR 99 (287)
Q Consensus 79 ~~~l~~k~~EL~~ke~EL~rR 99 (287)
+..|+.|-+||..+-.+|+..
T Consensus 3 MnQLE~KVEeLl~~~~~Le~e 23 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNK 23 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHH
Confidence 445677777777666666543
No 42
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=20.28 E-value=85 Score=24.64 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 023100 80 ADLKKKEKELQAKEAE 95 (287)
Q Consensus 80 ~~l~~k~~EL~~ke~E 95 (287)
.+++++.+||++++++
T Consensus 13 ~~l~~~~~~l~~~~~~ 28 (184)
T 3p01_A 13 DLLKQRTEELRRANAQ 28 (184)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555444433
No 43
>1abz_A Alpha-T-alpha, ATA; de novo design, helix-turn-helix, peptide; HET: SIN; NMR {} SCOP: k.15.1.1
Probab=20.14 E-value=1.5e+02 Score=18.68 Aligned_cols=10 Identities=40% Similarity=0.614 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q 023100 95 ELRRREQDVR 104 (287)
Q Consensus 95 EL~rRE~eL~ 104 (287)
||+..|+.|+
T Consensus 25 elrameaklk 34 (40)
T 1abz_A 25 ELRAMEAKLK 34 (40)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 44
>3fd9_A Uncharacterized protein; anti-activator, transcription regulation, repressor, type III secretion, unknown function; 2.60A {Pseudomonas aeruginosa ucbpp-pa14}
Probab=20.07 E-value=94 Score=27.91 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023100 80 ADLKKKEKELQAKEAELRRRE 100 (287)
Q Consensus 80 ~~l~~k~~EL~~ke~EL~rRE 100 (287)
+++.+-++.|+++|+||+++-
T Consensus 159 ~~l~~~~~~L~~~~~~l~~ll 179 (256)
T 3fd9_A 159 ARVAKCQARTQEQVAELAGKL 179 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555666666666665443
Done!