BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023102
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 28/239 (11%)
Query: 42 RKVIAEIIATYLLVFVTCGSAALSAYDEHRVSK-----------------LGASVAGGLI 84
++ AE++ T++LVF G+A ++ + K +A L
Sbjct: 7 KRFTAEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALA 66
Query: 85 VTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHP- 143
+ +IY++G ISGAH+NPAVT+A ++ FP ++V Y AQ GA SL + P
Sbjct: 67 IAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPA 126
Query: 144 ---IKHIGTTSP-SGSDL-QALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCI 198
+ +G T+P G QA++ E + TF +M V VA D +A AG+ +G V
Sbjct: 127 AATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGLTVGG 186
Query: 199 TSVLAGPVSGGSMNPARTVGPAIASSFYK-GIW----VYLVGPVTGTFMGAWSYNMIRE 252
G ++G S+NPART GP + S +W +Y++GP+ G AW YN + +
Sbjct: 187 IITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYNYLAK 245
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 116/238 (48%), Gaps = 29/238 (12%)
Query: 42 RKVIAEIIATYLLVFVTCGSAALS-----------------AYDEHRVSKLGASVAGGLI 84
++ IAE I T++LVF GSAA++ + +A G
Sbjct: 6 KRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFA 65
Query: 85 VTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLR----VL 140
+ IYA+G+ISG H+NPAVT+ +V+ FP ++V Y AQL GA S +
Sbjct: 66 IAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIG 125
Query: 141 LHPIKHIGTTSP--SGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCI 198
+ +G T+P S QA++ E+V TF +M +A D +A AGI +G V
Sbjct: 126 AATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAGIIIGLTVAG 185
Query: 199 TSVLAGPVSGGSMNPARTVGPAIASSFYKG--IW----VYLVGPVTGTFMGAWSYNMI 250
G +SG S+NPART GP + + G +W +Y++GP+ G + A +Y +
Sbjct: 186 IITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYL 243
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
+ + ++AE++ T+LL+ G A + R K A + GL V +I +G+ISG+
Sbjct: 143 YWQAMLAEVVGTFLLMITIMGIAV-----DERAPKGFAGIIIGLTVAGIITTLGNISGSS 197
Query: 100 MNPAVTLA-------FAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVL 140
+NPA T FA W IY + GAV A+LT + L
Sbjct: 198 LNPARTFGPYLNDMIFAGTDL--WNYYSIYVIGPIVGAVLAALTYQYL 243
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
F R + AE AT VF G++ A V L ++A GL + ++ AVGHISGAH
Sbjct: 9 FWRAIFAEFFATLFYVFFGLGASLRWAPGPLHV--LQVALAFGLALATLVQAVGHISGAH 66
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKH----IGTTSPSGS 155
+NPAVT AF + Y AQL GAV+ + L + P + T P S
Sbjct: 67 VNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVS 126
Query: 156 DLQALIMEIVVTFSMMFVTSAVAT-DTKAIGELAGI--AVGSAVCITSVLAGPVSGGSMN 212
QA I+EI +T + FV AT D + G L + AVG ++ + + +G MN
Sbjct: 127 VGQATIVEIFLT--LQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMN 184
Query: 213 PARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMI 250
PAR+ PAI + + WVY VGPV G +G+ Y+ +
Sbjct: 185 PARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL 222
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 108/204 (52%), Gaps = 19/204 (9%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF CGSA L+A + E + G ++A GL V M +AVGHISG H
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAWGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLL------------HPIKHI 147
NPAVT+ A FP K+V Y AQ+ G + A+ L ++
Sbjct: 65 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 124
Query: 148 GTTSPSG-SDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAGPV 206
G SP G S L AL++E+V++ + V ATD A A IA+G A+ + +++ PV
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIGLISIPV 183
Query: 207 SGGSMNPARTVGPAIASSFYKGIW 230
+ S+NPAR+ AI ++G W
Sbjct: 184 TNFSVNPARSTAVAI----FQGGW 203
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 108/204 (52%), Gaps = 19/204 (9%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF CGSA L+A + E + G ++A GL V M +AVGHISG H
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLL------------HPIKHI 147
NPAVT+ A FP K+V Y AQ+ G + A+ L ++
Sbjct: 65 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 124
Query: 148 GTTSPSG-SDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAGPV 206
G SP G S L AL++E+V++ + V ATD A A IA+G A+ + +++ PV
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIGLISIPV 183
Query: 207 SGGSMNPARTVGPAIASSFYKGIW 230
+ S+NPAR+ AI ++G W
Sbjct: 184 TNFSVNPARSTAVAI----FQGGW 203
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 108/204 (52%), Gaps = 19/204 (9%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF CGSA L+A + E + G ++A GL V M +AVGHISG H
Sbjct: 2 FRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 61
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLL------------HPIKHI 147
NPAVT+ A FP K+V Y AQ+ G + A+ L ++
Sbjct: 62 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 121
Query: 148 GTTSPSG-SDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAGPV 206
G SP G S L AL++E+V++ + V ATD A A IA+G A+ + +++ PV
Sbjct: 122 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIHLISIPV 180
Query: 207 SGGSMNPARTVGPAIASSFYKGIW 230
+ S+NPAR+ AI ++G W
Sbjct: 181 TNTSVNPARSTAVAI----FQGGW 200
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
F R + AE AT VF G++ A V L ++A GL + ++ AVGHISGAH
Sbjct: 5 FWRAIFAEFFATLFYVFFGLGASLRWAPGPLHV--LQVALAFGLALATLVQAVGHISGAH 62
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKH----IGTTSPSGS 155
+NPAVT AF + Y AQL GAV+ + L + P + T P S
Sbjct: 63 VNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVS 122
Query: 156 DLQALIMEIVVTFSMMFVTSAVAT-DTKAIGELAGI--AVGSAVCITSVLAGPVSGGSMN 212
QA I+EI +T + FV AT D + G L + AVG ++ + + +G MN
Sbjct: 123 VGQATIVEIFLT--LQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMN 180
Query: 213 PARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMI 250
PAR+ PAI + + WVY VGPV G +G+ Y+ +
Sbjct: 181 PARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL 218
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
F R + AE AT VF G++ A V L ++A GL + ++ AVGHISGAH
Sbjct: 3 FWRAIFAEFFATLFYVFFGLGASLRWAPGPLHV--LQVALAFGLALATLVQAVGHISGAH 60
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKH----IGTTSPSGS 155
+NPAVT AF + Y AQL GAV+ + L + P + T P S
Sbjct: 61 VNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVS 120
Query: 156 DLQALIMEIVVTFSMMFVTSAVAT-DTKAIGELAGI--AVGSAVCITSVLAGPVSGGSMN 212
QA I+EI +T + FV AT D + G L + AVG ++ + + +G MN
Sbjct: 121 VGQATIVEIFLT--LQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMN 178
Query: 213 PARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMI 250
PAR+ PAI + + WVY VGPV G +G+ Y+ +
Sbjct: 179 PARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL 216
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
F R + AE A+ VF G++ A V L ++A GL + ++ AVGHISGAH
Sbjct: 9 FWRAICAEFFASLFYVFFGLGASLRWAPGPLHV--LQVALAFGLALATLVQAVGHISGAH 66
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKH----IGTTSPSGS 155
+NPAVT AF + Y AQL GAV+ + L + P + T P S
Sbjct: 67 VNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVS 126
Query: 156 DLQALIMEIVVTFSMMFVTSAVAT-DTKAIGELAGI--AVGSAVCITSVLAGPVSGGSMN 212
QA I+EI +T + FV AT D + G L + AVG ++ + + +G MN
Sbjct: 127 VGQATIVEIFLT--LQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMN 184
Query: 213 PARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMI 250
PAR+ PAI + + WVY VGPV G +G+ Y+ +
Sbjct: 185 PARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL 222
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 13/228 (5%)
Query: 31 VWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHR--VSKLGASVAGGLIVTVM 88
VW + F + V AE +A + V ++ GS E+ V + S+ GL + M
Sbjct: 7 VWTQ----AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATM 62
Query: 89 IYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHP--IKH 146
+ GHISG H+NPAVT+A R + Y AQ GA+ + L ++ P +
Sbjct: 63 VQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGG 122
Query: 147 IGTTSPSGSDL--QALIMEIVVTFSMMFVTSAVATD--TKAIGELAGIAVGSAVCITSVL 202
+G T+ G+ L++E+++TF ++F A D T G +A +A+G +V I +
Sbjct: 123 LGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLF 181
Query: 203 AGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMI 250
A +G SMNPAR+ GPA+ ++ W+Y VGP+ G + Y +
Sbjct: 182 AINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYV 229
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 13/228 (5%)
Query: 31 VWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHR--VSKLGASVAGGLIVTVM 88
VW + F + V AE +A + V ++ GS E+ V + S+ GL + M
Sbjct: 46 VWTQ----AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATM 101
Query: 89 IYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHP--IKH 146
+ GHISG H+NPAVT+A R + Y AQ GA+ + L ++ P +
Sbjct: 102 VQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGG 161
Query: 147 IGTTSPSGSDL--QALIMEIVVTFSMMFVTSAVATD--TKAIGELAGIAVGSAVCITSVL 202
+G T+ G+ L++E+++TF ++F A D T G +A +A+G +V I +
Sbjct: 162 LGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLF 220
Query: 203 AGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMI 250
A +G SMNPAR+ GPA+ ++ W+Y VGP+ G + Y +
Sbjct: 221 AINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYV 268
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 107/204 (52%), Gaps = 19/204 (9%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF CGSA L+A + + G ++A GL V M +AVGHISG H
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAVLAAGFPALGIGFAGVALAWGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLL------------HPIKHI 147
NPAVT+ A FP K+V Y AQ+ G + A+ L ++
Sbjct: 65 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 124
Query: 148 GTTSPSG-SDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAGPV 206
G SP G S L AL++E+V++ + V ATD A A IA+G A+ + +++ PV
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIHLISIPV 183
Query: 207 SGGSMNPARTVGPAIASSFYKGIW 230
+ S+NPAR+ AI ++G W
Sbjct: 184 TNTSVNPARSTAVAI----FQGGW 203
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 13/228 (5%)
Query: 31 VWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHR--VSKLGASVAGGLIVTVM 88
VW + F + V AE +A + V ++ GS E+ V + S+ GL + M
Sbjct: 7 VWTQ----AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATM 62
Query: 89 IYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHP--IKH 146
+ GHISG H+NPAVT+A R + Y AQ GA+ + L ++ P +
Sbjct: 63 VQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGG 122
Query: 147 IGTTSPSGSDL--QALIMEIVVTFSMMFV--TSAVATDTKAIGELAGIAVGSAVCITSVL 202
+G T+ G+ L++E+++TF ++F S + T G +A +A+G +V I +
Sbjct: 123 LGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA-LAIGFSVAIGHLF 181
Query: 203 AGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMI 250
A +G SMNPAR+ GPA+ ++ W+Y VGP+ G + Y +
Sbjct: 182 AINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYV 229
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 107/204 (52%), Gaps = 19/204 (9%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF GSA L+A + E + G ++A GL V M +AVGHISG H
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLL------------HPIKHI 147
NPAVT+ A FP K+V Y AQ+ G + A+ L ++
Sbjct: 65 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 124
Query: 148 GTTSPSG-SDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAGPV 206
G SP G S L AL++E+V++ + V ATD A A IA+G A+ + +++ PV
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIHLISIPV 183
Query: 207 SGGSMNPARTVGPAIASSFYKGIW 230
+ S+NPAR+ AI ++G W
Sbjct: 184 TNCSVNPARSTAVAI----FQGGW 203
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 107/204 (52%), Gaps = 19/204 (9%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF GSA L+A + E + G ++A GL V M +AVGHISG H
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLL------------HPIKHI 147
NPAVT+ A FP K+V Y AQ+ G + A+ L ++
Sbjct: 65 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 124
Query: 148 GTTSPSG-SDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAGPV 206
G SP G S L AL++E+V++ + V ATD A A IA+G A+ + +++ PV
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIHLISIPV 183
Query: 207 SGGSMNPARTVGPAIASSFYKGIW 230
+ S+NPAR+ AI ++G W
Sbjct: 184 TNCSVNPARSTAVAI----FQGGW 203
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 106/204 (51%), Gaps = 19/204 (9%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF GSA L+A + E + G ++A GL V M +AVGHISG H
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLL------------HPIKHI 147
NPAVT+ A FP K+V Y AQ+ G + A+ L ++
Sbjct: 65 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 124
Query: 148 GTTSPSG-SDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAGPV 206
G SP G S L AL++E+V++ + V ATD A A IA+G A + +++ PV
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLACTLIHLISIPV 183
Query: 207 SGGSMNPARTVGPAIASSFYKGIW 230
+ S+NPAR+ AI ++G W
Sbjct: 184 TNTSVNPARSTAVAI----FQGGW 203
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 9/219 (4%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHR--VSKLGASVAGGLIVTVMIYAVGHISG 97
F + V AE +A + V ++ GS E V + S+ GL + M+ GHISG
Sbjct: 3 FWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISG 62
Query: 98 AHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHP--IKHIGTTSPSGS 155
H+NPAVT+A R + Y AAQ GA+ + L ++ P + +G T G+
Sbjct: 63 GHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGN 122
Query: 156 DL--QALIMEIVVTFSMMF--VTSAVATDTKAIGELAGIAVGSAVCITSVLAGPVSGGSM 211
L++E+++TF ++F S + T G +A +A+G +V I + A +G SM
Sbjct: 123 LTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASM 181
Query: 212 NPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMI 250
NPAR+ GPA+ ++ W+Y VGP+ G + Y +
Sbjct: 182 NPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYV 220
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 119/245 (48%), Gaps = 33/245 (13%)
Query: 33 NEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAY----DEHRV-SKLGASVAGGLIVTV 87
+E F R V+AE +AT L VF++ GSA Y ++ V + S+A GL +
Sbjct: 3 SEFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIAT 62
Query: 88 MIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHI 147
+ +VGHISGAH+NPAVTL + +Y AQ GA+ A+ L +
Sbjct: 63 LAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGI------- 115
Query: 148 GTTSPSGSDL------------QALIMEIVVTFSMMFVTSAVATDTKAIGELAG---IAV 192
T+S +G+ L Q L +EI+ T + V +AT + +L G +A+
Sbjct: 116 -TSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQL--VLCVLATTDRRRRDLGGSAPLAI 172
Query: 193 GSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMI-- 250
G +V + +LA +G +NPAR+ G A+ + + W++ VGP G + Y+ I
Sbjct: 173 GLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFILA 232
Query: 251 -RETD 254
R +D
Sbjct: 233 PRSSD 237
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 116/239 (48%), Gaps = 19/239 (7%)
Query: 33 NEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGA-------SVAGGLIV 85
+E F R V+AE +A L +F++ GSA Y GA S+A GL +
Sbjct: 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSI 62
Query: 86 TVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLH--P 143
+ +VGHISGAH+NPAVTL + +Y AQ GA+ A+ L + P
Sbjct: 63 ATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP 122
Query: 144 IKHIGTT--SPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAG---IAVGSAVCI 198
+G +P + Q L +EI+ T + V +AT + +L G +A+G +V +
Sbjct: 123 DNSLGLNALAPGVNSGQGLGIEIIGTLQL--VLCVLATTDRRRRDLGGSGPLAIGFSVAL 180
Query: 199 TSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMI---RETD 254
+LA +G +NPAR+ G ++ + ++ W++ VGP G + Y+ I R +D
Sbjct: 181 GHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSD 239
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 117/227 (51%), Gaps = 15/227 (6%)
Query: 42 RKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHM 100
RK++AE T+ LVF CGSA +A + E + G ++A GL V M YAVG ISG H
Sbjct: 31 RKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHF 90
Query: 101 NPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHI----------GTT 150
NPAV++ FP + Y AQ+ GA+ A+ L V+ I G
Sbjct: 91 NPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEH 150
Query: 151 SPSGSDL-QALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAGPVSGG 209
SP G L AL++EI++T + V +T + A IA+G A+ + +++ PV+
Sbjct: 151 SPGGYSLVSALLIEIILTAFFLIVILG-STHGRVPAGFAPIAIGLALTLIHLISIPVTNT 209
Query: 210 SMNPARTVGPAIASSFY--KGIWVYLVGPVTGTFMGAWSYNMIRETD 254
S+NPAR+ G A+ + + +W++ + P+ G GA + + E D
Sbjct: 210 SVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFGEKD 256
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 120/239 (50%), Gaps = 21/239 (8%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
FL+ V AE +AT + VF GSA + + L ++A GL + + A+G +SG H
Sbjct: 11 FLKAVFAEFLATLIFVFFGLGSAL--KWPSALPTILQIALAFGLAIGTLAQALGPVSGGH 68
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPSG----- 154
+NPA+TLA + Y AAQL GA++ + L + P+ G + +
Sbjct: 69 INPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYG-VAPLNARGNLAVNALNNNT 127
Query: 155 SDLQALIMEIVVTFSMMFVTSAVATDTKAIGELA--GIAVGSAVCITSVLAGPVSGGSMN 212
+ QA+++E+++TF + A +TD++ + +++G +V + ++ +G SMN
Sbjct: 128 TQGQAMVVELILTFQLALCIFA-STDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMN 186
Query: 213 PARTVGPAIA-SSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAISPGSLSFKLR 270
PAR+ GPA+ + F WV+ VGP+ G + A Y + + P SLS R
Sbjct: 187 PARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYF---------YLLFPNSLSLSER 236
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 109/245 (44%), Gaps = 37/245 (15%)
Query: 43 KVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNP 102
+ IAE + T LL+F G A + SV GL V + IY +SGAH+NP
Sbjct: 10 QCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNP 69
Query: 103 AVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPI-------KHIGTTSPSGS 155
AVT+A F ++V + +Q+ GA A+ + L + + HI S
Sbjct: 70 AVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESV 129
Query: 156 DL---------------QALIMEIVVTFSMMFVTSAVATDTKAI--GELAGIAVGSAVCI 198
DL QA +E+V+T +M + A+ D + G LA + +G + +
Sbjct: 130 DLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAV 189
Query: 199 TSVLAGPVSGGSMNPARTVGPAIAS--------SFYKG-----IWVYLVGPVTGTFMGAW 245
GP++G +MNPAR GP + + +F G V L GP+ G +GA+
Sbjct: 190 IGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAF 249
Query: 246 SYNMI 250
+Y +
Sbjct: 250 AYRKL 254
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 109/245 (44%), Gaps = 37/245 (15%)
Query: 43 KVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNP 102
+ IAE + T LL+F G A + SV GL V + IY +SGAH+NP
Sbjct: 10 QCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNP 69
Query: 103 AVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPI-------KHIGTTSPSGS 155
AVT+A F ++V + +Q+ GA A+ + L + + HI S
Sbjct: 70 AVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESV 129
Query: 156 DL---------------QALIMEIVVTFSMMFVTSAVATDTKAI--GELAGIAVGSAVCI 198
DL QA +E+V+T +M + A+ D + G LA + +G + +
Sbjct: 130 DLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAV 189
Query: 199 TSVLAGPVSGGSMNPARTVGPAIAS--------SFYKG-----IWVYLVGPVTGTFMGAW 245
GP++G +MNPAR GP + + +F G V L GP+ G +GA+
Sbjct: 190 IGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAF 249
Query: 246 SYNMI 250
+Y +
Sbjct: 250 AYRKL 254
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 102/227 (44%), Gaps = 38/227 (16%)
Query: 40 FLRKVIAEIIATYLLVFVT-------------CGSAALSAYDEHRVSKLGASVAGGLIVT 86
F R IAE IAT L +++T CGS L LG + A G ++
Sbjct: 37 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGL----------LGIAWAFGGMIF 86
Query: 87 VMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLH-PIK 145
V++Y ISG H+NPAVT R + +Y AQ GA+ ++ + P
Sbjct: 87 VLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYN 146
Query: 146 HIGTTSPS----GSDLQALIMEIVVTFSMMFVTSAVATDTKAIGE------LAGIAVGSA 195
G + S + AL EI+ TF +++ T ATD K LA + +G A
Sbjct: 147 QFGGGANSVALGYNKGTALGAEIIGTFVLVY-TVFSATDPKRSARDSHVPILAPLPIGFA 205
Query: 196 VCITSVLAGPVSGGSMNPARTVGPAI---ASSFYKGIWVYLVGPVTG 239
V + + P++G +NPAR+ G A+ ++ + W++ VGP G
Sbjct: 206 VFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIG 252
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 102/227 (44%), Gaps = 38/227 (16%)
Query: 40 FLRKVIAEIIATYLLVFVT-------------CGSAALSAYDEHRVSKLGASVAGGLIVT 86
F R IAE IAT L +++T CGS L LG + A G ++
Sbjct: 60 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGL----------LGIAWAFGGMIF 109
Query: 87 VMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLH-PIK 145
V++Y ISG H+NPAVT R + +Y AQ GA+ ++ + P
Sbjct: 110 VLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYN 169
Query: 146 HIGTTSPS----GSDLQALIMEIVVTFSMMFVTSAVATDTKAIGE------LAGIAVGSA 195
G + S + AL EI+ TF +++ T ATD K LA + +G A
Sbjct: 170 QFGGGANSVALGYNKGTALGAEIIGTFVLVY-TVFSATDPKRSARDSHVPILAPLPIGFA 228
Query: 196 VCITSVLAGPVSGGSMNPARTVGPAI---ASSFYKGIWVYLVGPVTG 239
V + + P++G +NPAR+ G A+ ++ + W++ VGP G
Sbjct: 229 VFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIG 275
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 102/227 (44%), Gaps = 38/227 (16%)
Query: 40 FLRKVIAEIIATYLLVFVT-------------CGSAALSAYDEHRVSKLGASVAGGLIVT 86
F R IAE IAT L +++T CGS L LG + A G ++
Sbjct: 56 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGL----------LGIAWAFGGMIF 105
Query: 87 VMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLH-PIK 145
V++Y ISG H+NPAVT R + +Y AQ GA+ ++ + P
Sbjct: 106 VLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYN 165
Query: 146 HIGTTSPS----GSDLQALIMEIVVTFSMMFVTSAVATDTKAIGE------LAGIAVGSA 195
G + S + AL EI+ TF +++ T ATD K LA + +G A
Sbjct: 166 QFGGGANSVALGYNKGTALGAEIIGTFVLVY-TVFSATDPKRSARDSHVPILAPLPIGFA 224
Query: 196 VCITSVLAGPVSGGSMNPARTVGPAI---ASSFYKGIWVYLVGPVTG 239
V + + P++G +NPAR+ G A+ ++ + W++ VGP G
Sbjct: 225 VFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIG 271
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 102/227 (44%), Gaps = 38/227 (16%)
Query: 40 FLRKVIAEIIATYLLVFVT-------------CGSAALSAYDEHRVSKLGASVAGGLIVT 86
F R IAE IAT L +++T CGS L LG + A G ++
Sbjct: 60 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGL----------LGIAWAFGGMIF 109
Query: 87 VMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLH-PIK 145
V++Y ISG H+NPAVT R + +Y AQ GA+ ++ + P
Sbjct: 110 VLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYN 169
Query: 146 HIGTTSPS----GSDLQALIMEIVVTFSMMFVTSAVATDTKAIGE------LAGIAVGSA 195
G + S + AL EI+ TF +++ T ATD K LA + +G A
Sbjct: 170 QFGGGANSVALGYNKGTALGAEIIGTFVLVY-TVFSATDPKRSARDSHVPILAPLPIGFA 228
Query: 196 VCITSVLAGPVSGGSMNPARTVGPAI---ASSFYKGIWVYLVGPVTG 239
V + + P++G +NPAR+ G A+ ++ + W++ VGP G
Sbjct: 229 VFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIG 275
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 102/227 (44%), Gaps = 38/227 (16%)
Query: 40 FLRKVIAEIIATYLLVFVT-------------CGSAALSAYDEHRVSKLGASVAGGLIVT 86
F R IAE IAT L +++T CGS L LG + A G ++
Sbjct: 37 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGL----------LGIAWAFGGMIF 86
Query: 87 VMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLH-PIK 145
V++Y ISG H+NPAVT R + +Y AQ GA+ ++ + P
Sbjct: 87 VLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYN 146
Query: 146 HIGTTSPS----GSDLQALIMEIVVTFSMMFVTSAVATDTKAIGE------LAGIAVGSA 195
G + S + AL EI+ TF +++ T ATD K LA + +G A
Sbjct: 147 QFGGGANSVALGYNKGTALGAEIIGTFVLVY-TVFSATDPKRSARDSHVPILAPLPIGFA 205
Query: 196 VCITSVLAGPVSGGSMNPARTVGPAI---ASSFYKGIWVYLVGPVTG 239
V + + P++G +NPAR+ G A+ ++ + W++ VGP G
Sbjct: 206 VFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIG 252
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 40/246 (16%)
Query: 36 YPPGFLRKVIAEIIATYLLVFVTCGSAA------LSAYDEHRVSKLGASVAGGLIVTVMI 89
+ ++R+ I E + T++L+F+ G+ A LS D +++ + GL V I
Sbjct: 5 FYKSYVREFIGEFLGTFVLMFLGEGATANFHTTGLSG-DWYKLC-----LGWGLAVFFGI 58
Query: 90 YAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPI----- 144
+SGAH+N AV++ +++ F K++P+Y AQL GA + T+ L H
Sbjct: 59 LVSAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSK 118
Query: 145 --KHIGTTS--PSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITS 200
+ TS PS S A E+++T ++ + V D G+ + + S V +
Sbjct: 119 IPQFAWETSRNPSISLTGAFFNELILT-GILLLVILVVVDENICGKFHILKLSSVVGLII 177
Query: 201 VLAGPVSGGS----MNPARTVGPAIAS------------SFYKGIWVYLVGPVTGTFMGA 244
+ G GG+ +NP+R +G S +FY WV LV P G+ +
Sbjct: 178 LCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFY--FWVPLVAPCVGSVVFC 235
Query: 245 WSYNMI 250
Y+ +
Sbjct: 236 QFYDKV 241
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 2/167 (1%)
Query: 78 SVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTL 137
S G V V ++ +SG ++NPAVTLA R P + + A Q+ ++A+
Sbjct: 89 SFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAA 148
Query: 138 RVLL-HPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAV 196
+ I S + L +E T + +A + A +G A+
Sbjct: 149 SAMTPGEIAFANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHRATWFAPFVIGIAL 208
Query: 197 CITSVLAGPVSGGSMNPARTVGPAIAS-SFYKGIWVYLVGPVTGTFM 242
I ++ +G +NPAR+ GPA+A+ SF W+Y +GP+ G F+
Sbjct: 209 LIAHLICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFL 255
>pdb|3RB9|A Chain A, Crystal Structure Of The M. Tuberculosis Beta Clamp
pdb|3RB9|B Chain B, Crystal Structure Of The M. Tuberculosis Beta Clamp
Length = 395
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 213 PARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAISPGSLSFKLRRL 272
PAR P ++ V L G G + + Y + E A +SPGS+ R L
Sbjct: 27 PARPAVPVLSG-------VLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGSVLVSGRLL 79
Query: 273 KSNEQAHNNDPLD 285
+A N P+D
Sbjct: 80 SDITRALPNKPVD 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,088,055
Number of Sequences: 62578
Number of extensions: 300279
Number of successful extensions: 802
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 33
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)