BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023103
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 328 bits (842), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 158/243 (65%), Positives = 190/243 (78%), Gaps = 1/243 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+MLRLAWH AGT+D TKTGGP G+I++ E
Sbjct: 17 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAE 76
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 77 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 136
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 137 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 196
Query: 183 FDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSEL 242
FDNSYF ELL+GE EGLLQLP+DKALL DP FR V+ YA DEDAFF DYA +H+KLSEL
Sbjct: 197 FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
Query: 243 GFS 245
GF+
Sbjct: 257 GFA 259
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 328 bits (842), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 158/243 (65%), Positives = 190/243 (78%), Gaps = 1/243 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+MLRLAWH AGT+D TKTGGP G+I++ E
Sbjct: 5 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAE 64
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 65 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 124
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 125 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 184
Query: 183 FDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSEL 242
FDNSYF ELL+GE EGLLQLP+DKALL DP FR V+ YA DEDAFF DYA +H+KLSEL
Sbjct: 185 FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
Query: 243 GFS 245
GF+
Sbjct: 245 GFA 247
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 328 bits (842), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 158/243 (65%), Positives = 190/243 (78%), Gaps = 1/243 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+MLRLAWH AGT+D TKTGGP G+I++ E
Sbjct: 17 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAE 76
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 77 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 136
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 137 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 196
Query: 183 FDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSEL 242
FDNSYF ELL+GE EGLLQLP+DKALL DP FR V+ YA DEDAFF DYA +H+KLSEL
Sbjct: 197 FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
Query: 243 GFS 245
GF+
Sbjct: 257 GFA 259
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 327 bits (839), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 157/243 (64%), Positives = 190/243 (78%), Gaps = 1/243 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+ML+LAWH AGT+D TKTGGP G+I++ E
Sbjct: 5 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLKLAWHSAGTFDKGTKTGGPFGTIKHPAE 64
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 65 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 124
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 125 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 184
Query: 183 FDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSEL 242
FDNSYF ELL+GE EGLLQLP+DKALL DP FR V+ YA DEDAFF DYA +H+KLSEL
Sbjct: 185 FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
Query: 243 GFS 245
GF+
Sbjct: 245 GFA 247
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 326 bits (836), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 157/243 (64%), Positives = 189/243 (77%), Gaps = 1/243 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+MLRLAWH AGT+D TKTGGP G+I++ E
Sbjct: 17 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAE 76
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 77 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 136
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH E SGF+GPWT PL
Sbjct: 137 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKEASGFEGPWTSNPLI 196
Query: 183 FDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSEL 242
FDNSYF ELL+GE EGLLQLP+DKALL DP FR V+ YA DEDAFF DYA +H+KLSEL
Sbjct: 197 FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
Query: 243 GFS 245
GF+
Sbjct: 257 GFA 259
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 326 bits (836), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 157/243 (64%), Positives = 189/243 (77%), Gaps = 1/243 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+ML LAWH AGT+D TKTGGP G+I++ E
Sbjct: 5 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLALAWHSAGTFDKGTKTGGPFGTIKHPAE 64
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 65 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 124
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 125 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 184
Query: 183 FDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSEL 242
FDNSYF ELL+GE EGLLQLP+DKALL DP FR V+ YA DEDAFF DYA +H+KLSEL
Sbjct: 185 FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
Query: 243 GFS 245
GF+
Sbjct: 245 GFA 247
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 326 bits (836), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 157/243 (64%), Positives = 187/243 (76%), Gaps = 1/243 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K I+KA+R LR IA K CAP++LRLAWH AGT+D TKTGGP G+I+++ E
Sbjct: 5 PTVSPDYQKAIEKAKRKLRGFIAEKKCAPLILRLAWHSAGTFDSKTKTGGPFGTIKHQAE 64
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+HG+NNGL IA+ E +K + P ++YAD YQLAGVVAVE+TGGP V F PGR+D
Sbjct: 65 LAHGANNGLDIAVRLLEPIKEQFPIVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEP 124
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGLSD+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 125 PPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 184
Query: 183 FDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSEL 242
FDNSYF ELL GE +GLLQLP+DKALL D FR VE YA DED FF DYA +H KLSEL
Sbjct: 185 FDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSEL 244
Query: 243 GFS 245
GF+
Sbjct: 245 GFA 247
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 325 bits (833), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 157/243 (64%), Positives = 189/243 (77%), Gaps = 1/243 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+MLRLAW AGT+D TKTGGP G+I++ E
Sbjct: 17 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWASAGTFDKGTKTGGPFGTIKHPAE 76
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 77 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 136
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 137 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 196
Query: 183 FDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSEL 242
FDNSYF ELL+GE EGLLQLP+DKALL DP FR V+ YA DEDAFF DYA +H+KLSEL
Sbjct: 197 FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
Query: 243 GFS 245
GF+
Sbjct: 257 GFA 259
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 324 bits (831), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 157/243 (64%), Positives = 189/243 (77%), Gaps = 1/243 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+MLRLA H AGT+D TKTGGP G+I++ E
Sbjct: 17 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAAHSAGTFDKGTKTGGPFGTIKHPAE 76
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 77 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 136
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 137 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 196
Query: 183 FDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSEL 242
FDNSYF ELL+GE EGLLQLP+DKALL DP FR V+ YA DEDAFF DYA +H+KLSEL
Sbjct: 197 FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
Query: 243 GFS 245
GF+
Sbjct: 257 GFA 259
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 321 bits (823), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 156/243 (64%), Positives = 189/243 (77%), Gaps = 1/243 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+MLRLA + AGT+D TKTGGP G+I++ E
Sbjct: 5 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAAYSAGTFDKGTKTGGPFGTIKHPAE 64
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 65 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 124
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 125 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 184
Query: 183 FDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSEL 242
FDNSYF ELL+GE EGLLQLP+DKALL DP FR V+ YA DEDAFF DYA +H+KLSEL
Sbjct: 185 FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
Query: 243 GFS 245
GF+
Sbjct: 245 GFA 247
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 320 bits (821), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 156/243 (64%), Positives = 188/243 (77%), Gaps = 1/243 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+MLRLA AGT+D TKTGGP G+I++ E
Sbjct: 17 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAAMSAGTFDKGTKTGGPFGTIKHPAE 76
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 77 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 136
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 137 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 196
Query: 183 FDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSEL 242
FDNSYF ELL+GE EGLLQLP+DKALL DP FR V+ YA DEDAFF DYA +H+KLSEL
Sbjct: 197 FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
Query: 243 GFS 245
GF+
Sbjct: 257 GFA 259
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 320 bits (819), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 156/243 (64%), Positives = 188/243 (77%), Gaps = 1/243 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+MLRLA AGT+D TKTGGP G+I++ E
Sbjct: 17 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAACSAGTFDKGTKTGGPFGTIKHPAE 76
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 77 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 136
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 137 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 196
Query: 183 FDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSEL 242
FDNSYF ELL+GE EGLLQLP+DKALL DP FR V+ YA DEDAFF DYA +H+KLSEL
Sbjct: 197 FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
Query: 243 GFS 245
GF+
Sbjct: 257 GFA 259
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/264 (50%), Positives = 168/264 (63%), Gaps = 27/264 (10%)
Query: 13 EIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNT----KTGGPNGSIRNEEEYSHGS 68
++ AR D++ L+ K C PIM+RL WHDAGTY+ N + GG NGS+R + E HG+
Sbjct: 7 QLKSAREDIKELLKTKFCHPIMVRLGWHDAGTYNKNIEEWPQRGGANGSLRFDVELKHGA 66
Query: 69 NNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKD---SKISPK 125
N GL AL+ + +K K+ +TYADL+QLA A+E GGP + GR D + P+
Sbjct: 67 NAGLVNALNLLKPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPE 126
Query: 126 EGRLPDAKRGAP--HLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGF---------DG 174
EGRLPDA +P HLRD+FYRMGL+DK+IVALSG HTLGR+ P+RSG+ DG
Sbjct: 127 EGRLPDAGPPSPAQHLRDVFYRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDG 186
Query: 175 P-------WTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDA 227
P WT + LKFDNSYF ++ E LL LPTD AL EDP F+ Y E YA D +A
Sbjct: 187 PGAPGGQSWTAQWLKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADPEA 246
Query: 228 FFRDYAASHKKLSELG--FSPGSG 249
FF+DYA +H KLS LG F P G
Sbjct: 247 FFKDYAEAHAKLSNLGAKFGPAEG 270
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 203 bits (516), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 108/252 (42%), Positives = 151/252 (59%), Gaps = 21/252 (8%)
Query: 13 EIDKARRDLRALIAYK-NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYSHGSNN 70
+I R D+ +I+ K P ++RLAWH+A +YD K G PN S+R + E + N
Sbjct: 8 DIRALRADIEDMISEKLELGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNK 67
Query: 71 GLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGR---KDSKISPKEG 127
GL I E +K K+P+I+YADL+ LA VA+E GGPT+ F GR KD + +G
Sbjct: 68 GLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDG 127
Query: 128 RLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSY 187
RLPD + H+R++F R+G +D++ VAL G HT G H E SG+ GPWT + FDNS+
Sbjct: 128 RLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSF 187
Query: 188 FVELLNGE----------------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRD 231
F +LL+ + + L+ LP+D LL DP +R+YVELYAKD D F +D
Sbjct: 188 FTQLLDEDWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKD 247
Query: 232 YAASHKKLSELG 243
+A + KKL+ELG
Sbjct: 248 FANAFKKLTELG 259
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/252 (42%), Positives = 151/252 (59%), Gaps = 21/252 (8%)
Query: 13 EIDKARRDLRALIAYK-NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYSHGSNN 70
+I R D+ +I+ K P ++RLAWH+A +YD K G PN S+R + E + N
Sbjct: 7 DIRALRADIEDMISEKLELGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNK 66
Query: 71 GLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGR---KDSKISPKEG 127
GL I E +K K+P+I+YADL+ LA VA+E GGPT+ F GR KD + +G
Sbjct: 67 GLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDG 126
Query: 128 RLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSY 187
RLPD + H+R++F R+G +D++ VAL G HT G H E SG+ GPWT + FDNS+
Sbjct: 127 RLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSF 186
Query: 188 FVELLNGE----------------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRD 231
F +LL+ + + L+ LP+D LL DP +R+YVELYAKD D F +D
Sbjct: 187 FTQLLDEDWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKD 246
Query: 232 YAASHKKLSELG 243
+A + KKL+ELG
Sbjct: 247 FANAFKKLTELG 258
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/252 (42%), Positives = 151/252 (59%), Gaps = 21/252 (8%)
Query: 13 EIDKARRDLRALIAYK-NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYSHGSNN 70
+I R D+ +I+ K P ++RLAWH+A +YD K G PN S+R + E + N
Sbjct: 8 DIRALRADIEDMISEKLELGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNK 67
Query: 71 GLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGR---KDSKISPKEG 127
GL I E +K K+P+I+YADL+ LA VA+E GGPT+ F GR KD + +G
Sbjct: 68 GLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDG 127
Query: 128 RLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSY 187
RLPD + H+R++F R+G +D++ VAL G HT G H E SG+ GPWT + FDNS+
Sbjct: 128 RLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETHIEFSGYHGPWTHDKNGFDNSF 187
Query: 188 FVELLNGE----------------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRD 231
F +LL+ + + L+ LP+D LL DP +R+YVELYAKD D F +D
Sbjct: 188 FTQLLDEDWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKD 247
Query: 232 YAASHKKLSELG 243
+A + KKL+ELG
Sbjct: 248 FANAFKKLTELG 259
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 183 bits (465), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 144/237 (60%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VALSG HTLG+ H + SG++GPWT FDNS+++ LLN +
Sbjct: 159 QRLNMNDREVVALSGAHTLGKTHLKNSGYEGPWTANNNVFDNSFYLNLLNEDWKLEKNDA 218
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G LQLPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 219 NNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 275
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 143/237 (60%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G HTLG+ H + SG++GPWT P FDNS+++ LLN +
Sbjct: 159 QRLNMNDREVVALMGAHTLGKTHLKNSGYEGPWTANPNVFDNSFYLNLLNEDWKLEKNDA 218
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 219 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 275
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 181 bits (460), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 143/237 (60%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G HTLG+ H + SG++GPWT FDNS+++ LLN +
Sbjct: 159 QRLNMNDREVVALMGAHTLGKTHLKNSGYEGPWTANNNVFDNSFYLNLLNEDWKLEKNDA 218
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G LQLPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 219 NNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 275
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 142/237 (59%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G HTLG+ H + SG++GPWT FDNS+++ LLN +
Sbjct: 159 QRLNMNDREVVALMGAHTLGKTHLKNSGYEGPWTANNNVFDNSFYLNLLNEDWKLEKNDA 218
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 219 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 275
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 141/237 (59%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G HTLG+ H + SG++GPW FDNS+++ LLN +
Sbjct: 159 QRLNMNDREVVALMGAHTLGKTHLKNSGYEGPWDATNNVFDNSFYLNLLNEDWKLEKNDA 218
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 219 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 275
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 175 bits (443), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 142/239 (59%), Gaps = 18/239 (7%)
Query: 25 IAYKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVK 83
IA K C P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E +
Sbjct: 30 IAEKKCGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIH 89
Query: 84 AKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRD 141
+ P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R
Sbjct: 90 KEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRT 149
Query: 142 IFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE------ 195
F R+ ++D+++VAL G H LG+ H +RSG++GP+ F N +++ LLN +
Sbjct: 150 FFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPFGAANNVFTNEFYLNLLNEDWKLEKN 209
Query: 196 ---------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 210 DANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 268
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 139/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H +RSG++GPW F N +++ LLN +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 215
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 216 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 272
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 171 bits (433), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 142/246 (57%), Gaps = 21/246 (8%)
Query: 21 LRALIAYKNC---APIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIAL 76
LR Y N P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+
Sbjct: 32 LREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGF 91
Query: 77 DFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKR 134
F E + + P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA +
Sbjct: 92 KFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADK 151
Query: 135 GAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNG 194
A ++R F R+ ++D+++VAL G H LG+ H +RSG++GPW F N +++ LLN
Sbjct: 152 DADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNLLNE 211
Query: 195 E---------------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKL 239
+ G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL
Sbjct: 212 DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
Query: 240 SELGFS 245
E G +
Sbjct: 272 LENGIT 277
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 171 bits (432), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 141/246 (57%), Gaps = 21/246 (8%)
Query: 21 LRALIAYKNC---APIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIAL 76
LR Y N P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+
Sbjct: 30 LREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGF 89
Query: 77 DFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKR 134
F E + + P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA +
Sbjct: 90 KFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADK 149
Query: 135 GAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLN- 193
A ++R F R+ ++D+++VAL G H LG+ H +RSG++GPW F N +++ LLN
Sbjct: 150 DADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNLLNE 209
Query: 194 --------------GESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKL 239
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL
Sbjct: 210 NWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
Query: 240 SELGFS 245
E G +
Sbjct: 270 LENGIT 275
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 171 bits (432), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 141/246 (57%), Gaps = 21/246 (8%)
Query: 21 LRALIAYKNC---APIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIAL 76
LR Y N P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+
Sbjct: 32 LREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGF 91
Query: 77 DFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKR 134
F E + + P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA +
Sbjct: 92 KFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADK 151
Query: 135 GAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLN- 193
A ++R F R+ ++D+++VAL G H LG+ H +RSG++GPW F N +++ LLN
Sbjct: 152 DADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNLLNE 211
Query: 194 --------------GESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKL 239
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL
Sbjct: 212 NWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
Query: 240 SELGFS 245
E G +
Sbjct: 272 LENGIT 277
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N Y++ LLN +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEYYLNLLNEDWKLEKNDA 215
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 216 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 272
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNCFTNEFYLNLLNEDWKLEKNDA 218
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 219 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 275
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 218
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 219 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 275
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 218
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 219 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 275
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLN---------- 193
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNENWKLEKNDA 218
Query: 194 -----GESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 219 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 275
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 38 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 97
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 98 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 157
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 158 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 217
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 218 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 274
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 218
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 219 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGIT 275
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H +RSG++GPW F N +++ LLN +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 218
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPT +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 219 NNEQWDSKSGYMMLPTXYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 275
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 156 QRLNMNDREVVALKGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 215
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 216 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 272
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 42 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 101
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 102 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 161
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 162 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 221
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 222 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 278
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGCANNVFTNEFYLNLLNEDWKLEKNDA 220
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 221 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 277
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 220
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 221 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 277
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 141/246 (57%), Gaps = 21/246 (8%)
Query: 21 LRALIAYKNC---APIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIAL 76
LR Y N P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+
Sbjct: 32 LREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGF 91
Query: 77 DFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKR 134
F E + + P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA +
Sbjct: 92 KFLEPIHKEFPWISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTPEDTTPDNGRLPDADK 151
Query: 135 GAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNG 194
A ++R F R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN
Sbjct: 152 DADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNE 211
Query: 195 E---------------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKL 239
+ G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL
Sbjct: 212 DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
Query: 240 SELGFS 245
E G +
Sbjct: 272 LENGIT 277
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 215
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 216 NNEQWDSKSGYMHLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 272
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 220
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 221 NNEQWDSKSGYIMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 277
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 168 bits (425), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 218
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 219 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 275
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 168 bits (425), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 215
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 216 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGIT 272
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 167 bits (423), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 141/246 (57%), Gaps = 21/246 (8%)
Query: 21 LRALIAYKNC---APIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIAL 76
LR Y N P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+
Sbjct: 27 LREDDEYDNAIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGF 86
Query: 77 DFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKR 134
F E + + P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA +
Sbjct: 87 KFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADK 146
Query: 135 GAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNG 194
A ++R F R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN
Sbjct: 147 DAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNE 206
Query: 195 E---------------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKL 239
+ G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL
Sbjct: 207 DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
Query: 240 SELGFS 245
E G +
Sbjct: 267 LEDGIT 272
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 167 bits (423), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAW+ +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWYTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 218
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 219 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 275
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 167 bits (423), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ N GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPWNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 220
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 221 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 277
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 167 bits (423), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P++++LAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVKLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 220
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 221 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 277
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 167 bits (422), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 220
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPT+ +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 221 NNEQWDSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 277
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 167 bits (422), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 42 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 101
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 102 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 161
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 162 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 221
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPT+ +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 222 NNEQWDSKSGYMMLPTEYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 278
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 167 bits (422), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPD + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDMDKDAGYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 218
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 219 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 275
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 167 bits (422), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 139/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 38 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 97
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 98 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 157
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H +RSG++GP+ F N +++ LLN +
Sbjct: 158 QRLNMNDREVVALMGAHALGKTHLKRSGYEGPFGAANNVFTNEFYLNLLNEDWKLEKNDA 217
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 218 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDRFFKDFSKAFEKLLENGIT 274
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPD + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDYDKDAGYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 218
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 219 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 275
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N ++ LLN +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEKYLNLLNEDWKLEKNDA 215
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 216 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 272
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N ++ LLN +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEGYLNLLNEDWKLEKNDA 218
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 219 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 275
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 42 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 101
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 102 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 161
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 162 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 221
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPT +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 222 NNEQWDSKSGYMMLPTAYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 278
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++ LAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVALAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 215
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 216 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 272
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++ LAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVLLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 220
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 221 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 277
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 37 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 96
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 97 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 156
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G LG+ H + SG++GPW F N +++ LLN +
Sbjct: 157 QRLNMNDREVVALMGAGALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 216
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 217 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 273
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G LG+ H + SG++GPW F N +++ LLN +
Sbjct: 156 QRLNMNDREVVALMGAGALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 215
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 216 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 272
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAW +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAWLISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 220
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 221 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 277
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 164 bits (415), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLA+H +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAFHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 220
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 221 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 277
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 164 bits (415), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GP+ F N +++ LLN +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPFGAANNVFTNEFYLNLLNEDWKLEKNDA 220
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 221 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 277
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 164 bits (415), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 138/237 (58%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GP+ F N +++ LLN +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPYGAANNVFTNEFYLNLLNEDWKLEKNDA 215
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 216 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGIT 272
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 164 bits (414), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 135/230 (58%), Gaps = 18/230 (7%)
Query: 34 MLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + + P I+
Sbjct: 46 LVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSG 105
Query: 93 DLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIFYRMGLSD 150
DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F R+ ++D
Sbjct: 106 DLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMND 165
Query: 151 KDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE--------------- 195
+++VAL G H LG+ H + SG++GPW F N +++ LLN +
Sbjct: 166 REVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 196 SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 226 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 275
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 163 bits (413), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R +++++ SN GL+ F E + +
Sbjct: 37 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKQFNDPSNAGLQNGFKFLEPIHKE 96
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 97 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 156
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G LG+ H + SG++GPW F N +++ LLN +
Sbjct: 157 QRLNMNDREVVALMGAGALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 216
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 217 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 273
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GP F N +++ LLN +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPQGAANNVFTNEFYLNLLNEDWKLEKNDA 220
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 221 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 277
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 136/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P ++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPELVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ + SG++GPW F N +++ LLN +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTELKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 215
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 216 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 272
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GP F N +++ LLN +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDA 220
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 221 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 277
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GP F N +++ LLN +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDA 218
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 219 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 275
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GP F N +++ LLN +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPQGAANNVFTNEFYLNLLNEDWKLEKNDA 215
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 216 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGIT 272
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GP F N +++ LLN +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDA 218
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 219 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGIT 275
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GP F N +++ LLN +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDA 215
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 216 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGIT 272
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 37 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 96
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 97 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 156
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GP F N +++ LLN +
Sbjct: 157 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDA 216
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 217 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGIT 273
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++GP F N +++ LLN +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDA 218
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPT+ +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 219 NNEQWDSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 275
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 157 bits (398), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 136/237 (57%), Gaps = 20/237 (8%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 42 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 101
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 102 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 161
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++G F N +++ LLN +
Sbjct: 162 QRLNMNDREVVALMGAHALGKTHLKNSGYEGGGANN--VFTNEFYLNLLNEDWKLEKNDA 219
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 220 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 276
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 157 bits (397), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 136/237 (57%), Gaps = 20/237 (8%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++G F N +++ LLN +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKNSGYEGGGANNV--FTNEFYLNLLNEDWKLEKNDA 213
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 214 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 270
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 157 bits (397), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 136/237 (57%), Gaps = 20/237 (8%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 37 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 96
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 97 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 156
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE-------- 195
R+ ++D+++VAL G H LG+ H + SG++G F N +++ LLN +
Sbjct: 157 QRLNMNDREVVALMGAHALGKTHLKNSGYEGGGANNV--FTNEFYLNLLNEDWKLEKNDA 214
Query: 196 -------SEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 245
G + LPTD +L++DP++ V+ YA D+D FF+D++ + +KL E G +
Sbjct: 215 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGIT 271
>pdb|3VLH|A Chain A, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLH|B Chain B, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLI|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLI|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLJ|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
pdb|3VLJ|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
Length = 737
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 126/331 (38%), Gaps = 111/331 (33%)
Query: 27 YKNCAPIMLRLAWHDAGTY-DVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y + P+ +R+AWH AGTY + + G G R S N L A +K K
Sbjct: 83 YGHYGPLFIRMAWHSAGTYRTADGRGGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQK 142
Query: 86 H-PKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS-------KISPKE----------- 126
+ KI++ADL LAG VA+E G T + GR+D+ P++
Sbjct: 143 YGQKISWADLMILAGNVAIESMGFKTFGYAGGREDAFEEDKAVNWGPEDEFETQERFDEP 202
Query: 127 GRL----------------------PDAKRGAPHLRDIFYRMGLSDKDIVAL-SGGHTLG 163
G + PD + A ++R F RM ++DK+ AL +GGHT G
Sbjct: 203 GEIQEGLGASVMGLIYVNPEGPDGNPDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFG 262
Query: 164 RAH----PER--------------------------------SGFDGPWTREPLKFDNSY 187
+ H PE SG +GPWT+ P ++D Y
Sbjct: 263 KVHGADDPEENLGPEPEAAPIEQQGLGWQNKNGNSKGGEMITSGIEGPWTQSPTEWDMGY 322
Query: 188 FVELLNGESE------GLLQ--------------------------LPTDKALLEDPEFR 215
LL+ E E G Q L TD AL DP++R
Sbjct: 323 INNLLDYEWEPEKGPGGAWQWAPKSEELKNSVPDAHDPDEKQTPMMLTTDIALKRDPDYR 382
Query: 216 RYVELYAKDEDAFFRDYAASHKKLSELGFSP 246
+E + ++ F ++A + KL+ L P
Sbjct: 383 EVMETFQENPMEFGMNFAKAWYKLTHLDMGP 413
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 37/198 (18%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS---IRNEEEYSHGSNNGLKIALDFCEEVKAKH---- 86
+++ AW A TY + K GG NG+ + ++ + L+ L E ++ +
Sbjct: 463 LVKTAWASASTYRDSDKRGGANGARLRLEPQKNWEVNEPEQLETVLGTLENIQTEFNDSR 522
Query: 87 ---PKITYADLYQLAGVVAVEVTGGPT-----VDFVPGRKDSKISPKEGRLPDAKRGAP- 137
+++ ADL L G AVE + F PGR D+ P+ P P
Sbjct: 523 SDGTQVSLADLIVLGGNAAVEQAAANAGYDVEIPFEPGRVDA--GPEHTDAPSFDALKPK 580
Query: 138 ------HLRDIFYR------------MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTRE 179
+++D R + L+ ++ AL GG A+ + + G +T E
Sbjct: 581 VDGVRNYIQDDITRPAEEVLVDNADLLNLTASELTALIGGMRSIGANYQDTDL-GVFTDE 639
Query: 180 PLKFDNSYFVELLNGESE 197
P N +FV LL+ +E
Sbjct: 640 PETLTNDFFVNLLDMGTE 657
>pdb|1ITK|A Chain A, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
pdb|1ITK|B Chain B, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
Length = 731
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 126/331 (38%), Gaps = 111/331 (33%)
Query: 27 YKNCAPIMLRLAWHDAGTY-DVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y + P+ +R+AWH AGTY + + G G R S N L A +K K
Sbjct: 83 YGHYGPLFIRMAWHSAGTYRTADGRGGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQK 142
Query: 86 H-PKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS-------KISPKE----------- 126
+ KI++ADL LAG VA+E G T + GR+D+ P++
Sbjct: 143 YGQKISWADLMILAGNVAIESMGFKTFGYAGGREDAFEEDKAVNWGPEDEFETQERFDEP 202
Query: 127 GRL----------------------PDAKRGAPHLRDIFYRMGLSDKDIVAL-SGGHTLG 163
G + PD + A ++R F RM ++DK+ AL +GGHT G
Sbjct: 203 GEIQEGLGASVMGLIYVNPEGPDGNPDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFG 262
Query: 164 RAH----PER--------------------------------SGFDGPWTREPLKFDNSY 187
+ H PE SG +GPWT+ P ++D Y
Sbjct: 263 KVHGADDPEENLGPEPEAAPIEQQGLGWQNKNGNSKGGEMITSGIEGPWTQSPTEWDMGY 322
Query: 188 FVELLNGE----------------SEGL----------------LQLPTDKALLEDPEFR 215
LL+ E SE L + L TD AL DP++R
Sbjct: 323 INNLLDYEWEPEKGPGGAWQWAPKSEELKNSVPDAHDPDEKQTPMMLTTDIALKRDPDYR 382
Query: 216 RYVELYAKDEDAFFRDYAASHKKLSELGFSP 246
+E + ++ F ++A + KL+ P
Sbjct: 383 EVMETFQENPMEFGMNFAKAWYKLTHRDMGP 413
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 37/198 (18%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS---IRNEEEYSHGSNNGLKIALDFCEEVKAKH---- 86
+++ AW A TY + K GG NG+ + ++ + L+ L E ++ +
Sbjct: 463 LVKTAWASASTYRDSDKRGGANGARLRLEPQKNWEVNEPEQLETVLGTLENIQTEFNDSR 522
Query: 87 ---PKITYADLYQLAGVVAVEVTGGPT-----VDFVPGRKDSKISPKEGRLPDAKRGAP- 137
+++ ADL L G AVE + F PGR D+ P+ P P
Sbjct: 523 SDGTQVSLADLIVLGGNAAVEQAAANAGYDVEIPFEPGRVDA--GPEHTDAPSFDALKPK 580
Query: 138 ------HLRDIFYR------------MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTRE 179
+++D R + L+ ++ AL GG A+ + + G +T E
Sbjct: 581 VDGVRNYIQDDITRPAEEVLVDNADLLNLTASELTALIGGMRSIGANYQDTDL-GVFTDE 639
Query: 180 PLKFDNSYFVELLNGESE 197
P N +FV LL+ +E
Sbjct: 640 PETLTNDFFVNLLDMGTE 657
>pdb|3UW8|A Chain A, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
pdb|3UW8|B Chain B, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
Length = 737
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 126/331 (38%), Gaps = 111/331 (33%)
Query: 27 YKNCAPIMLRLAWHDAGTY-DVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y + P+ +R+AWH AGTY + + G G R S N L A +K K
Sbjct: 83 YGHYGPLFIRMAWHSAGTYRTADGRGGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQK 142
Query: 86 H-PKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS-------KISPKE----------- 126
+ KI++ADL LAG VA+E G T + GR+D+ P++
Sbjct: 143 YGQKISWADLMILAGNVAIESMGFKTFGYAGGREDAFEEDKAVNWGPEDEFETQERFDEP 202
Query: 127 GRL----------------------PDAKRGAPHLRDIFYRMGLSDKDIVAL-SGGHTLG 163
G + PD + A ++R F RM ++DK+ AL +GGHT G
Sbjct: 203 GEIQEGLGASVMGLIYVNPEGPDGNPDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFG 262
Query: 164 RAH----PER--------------------------------SGFDGPWTREPLKFDNSY 187
+ H PE +G +GPWT+ P ++D Y
Sbjct: 263 KVHGADDPEENLGPEPEAAPIEQQGLGWQNKNGNSKGGEMITTGIEGPWTQSPTEWDMGY 322
Query: 188 FVELLNGE----------------SEGL----------------LQLPTDKALLEDPEFR 215
LL+ E SE L + L TD AL DP++R
Sbjct: 323 INNLLDYEWEPEKGPGGAWQWAPKSEELKNSVPDAHDPDEKQTPMMLTTDIALKRDPDYR 382
Query: 216 RYVELYAKDEDAFFRDYAASHKKLSELGFSP 246
+E + ++ F ++A + KL+ P
Sbjct: 383 EVMETFQENPMEFGMNFAKAWYKLTHRDMGP 413
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 37/198 (18%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS---IRNEEEYSHGSNNGLKIALDFCEEVKAKH---- 86
+++ AW A TY + K GG NG+ + ++ + L+ L E ++ +
Sbjct: 463 LVKTAWASASTYRDSDKRGGANGARLRLEPQKNWEVNEPEQLETVLGTLENIQTEFNDSR 522
Query: 87 ---PKITYADLYQLAGVVAVEVTGGPT-----VDFVPGRKDSKISPKEGRLPDAKRGAP- 137
+++ ADL L G AVE + F PGR D+ P+ P P
Sbjct: 523 SDGTQVSLADLIVLGGNAAVEQAAANAGYDVEIPFEPGRVDA--GPEHTDAPSFDALKPK 580
Query: 138 ------HLRDIFYR------------MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTRE 179
+++D R + L+ ++ AL GG A+ + + G +T E
Sbjct: 581 VDGVRNYIQDDITRPAEEVLVDNADLLNLTASELTALIGGMRSIGANYQDTDL-GVFTDE 639
Query: 180 PLKFDNSYFVELLNGESE 197
P N +FV LL+ +E
Sbjct: 640 PETLTNDFFVNLLDMGTE 657
>pdb|3VLK|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLK|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLL|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
pdb|3VLL|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
Length = 737
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 126/331 (38%), Gaps = 111/331 (33%)
Query: 27 YKNCAPIMLRLAWHDAGTY-DVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y + P+ +R+AWH AGTY + + G G R S N L A +K K
Sbjct: 83 YGHYGPLFIRMAWHSAGTYRTADGRGGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQK 142
Query: 86 H-PKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS-------KISPKE----------- 126
+ KI++ADL LAG VA+E G T + GR+D+ P++
Sbjct: 143 YGQKISWADLMILAGNVAIESMGFKTFGYAGGREDAFEEDKAVNWGPEDEFETQERFDEP 202
Query: 127 GRL----------------------PDAKRGAPHLRDIFYRMGLSDKDIVAL-SGGHTLG 163
G + PD + A ++R F RM ++DK+ AL +GGHT G
Sbjct: 203 GEIQEGLGASVMGLIYVNPEGPDGNPDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFG 262
Query: 164 RAH----PER--------------------------------SGFDGPWTREPLKFDNSY 187
+ H PE +G +GPWT+ P ++D Y
Sbjct: 263 KVHGADDPEENLGPEPEAAPIEQQGLGWQNKNGNSKGGEMITAGIEGPWTQSPTEWDMGY 322
Query: 188 FVELLNGE----------------SEGL----------------LQLPTDKALLEDPEFR 215
LL+ E SE L + L TD AL DP++R
Sbjct: 323 INNLLDYEWEPEKGPGGAWQWAPKSEELKNSVPDAHDPDEKQTPMMLTTDIALKRDPDYR 382
Query: 216 RYVELYAKDEDAFFRDYAASHKKLSELGFSP 246
+E + ++ F ++A + KL+ P
Sbjct: 383 EVMETFQENPMEFGMNFAKAWYKLTHRDMGP 413
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 37/198 (18%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS---IRNEEEYSHGSNNGLKIALDFCEEVKAKH---- 86
+++ AW A TY + K GG NG+ + ++ + L+ L E ++ +
Sbjct: 463 LVKTAWASASTYRDSDKRGGANGARLRLEPQKNWEVNEPEQLETVLGTLENIQTEFNDSR 522
Query: 87 ---PKITYADLYQLAGVVAVEVTGGPT-----VDFVPGRKDSKISPKEGRLPDAKRGAP- 137
+++ ADL L G AVE + F PGR D+ P+ P P
Sbjct: 523 SDGTQVSLADLIVLGGNAAVEQAAANAGYDVEIPFEPGRVDA--GPEHTDAPSFDALKPK 580
Query: 138 ------HLRDIFYR------------MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTRE 179
+++D R + L+ ++ AL GG A+ + + G +T E
Sbjct: 581 VDGVRNYIQDDITRPAEEVLVDNADLLNLTASELTALIGGMRSIGANYQDTDL-GVFTDE 639
Query: 180 PLKFDNSYFVELLNGESE 197
P N +FV LL+ +E
Sbjct: 640 PETLTNDFFVNLLDMGTE 657
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 34/259 (13%)
Query: 19 RDLRALIAYKNC---APIMLRLAWHDAGTYDVNT---KTGGPNGSIR--NEEEYSHGSNN 70
+DL+ I C A ++RL +HDA + GG +GS+ E + +NN
Sbjct: 22 QDLQETIFQNECGEDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSANN 81
Query: 71 GLKIALDFCEEVKAKHPKITYADLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRL 129
G+ +++ KH I+ ADL Q AG VA+ G P ++F+ GR + I+ +G +
Sbjct: 82 GIDDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLI 141
Query: 130 PDAKRGAPHLRDIFYRM-GLSDKDIVALSGGHTLGRAHPERSGFD-GPWTREPLKFDNSY 187
P+ + + F G + ++V+L H++ RA+ D P+ P FD
Sbjct: 142 PEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARANKVDQTIDAAPFDSTPFTFDTQV 201
Query: 188 FVELL-----------------------NGESEGLLQLPTDKALLEDPEFRRYVELYAKD 224
F+E+L +G G ++L +D AL DP + + +
Sbjct: 202 FLEVLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMRLQSDFALAHDPRTACIWQGFVNE 261
Query: 225 EDAFFRDYAASHKKLSELG 243
+ + A+ KL+ LG
Sbjct: 262 QAFMAASFRAAMSKLAVLG 280
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 34/259 (13%)
Query: 19 RDLRALIAYKNC---APIMLRLAWHDAGTYDVNT---KTGGPNGSIR--NEEEYSHGSNN 70
+DL+ I C A ++RL +HDA + GG +GS+ E + +NN
Sbjct: 22 QDLQETIFQNECGQDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSANN 81
Query: 71 GLKIALDFCEEVKAKHPKITYADLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRL 129
G+ +++ KH I+ ADL Q AG VA+ G P ++F+ GR + I+ +G +
Sbjct: 82 GIDDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLI 141
Query: 130 PDAKRGAPHLRDIFYRM-GLSDKDIVALSGGHTLGRAHPERSGFD-GPWTREPLKFDNSY 187
P+ + + F G + ++V+L H++ RA+ D P+ P FD
Sbjct: 142 PEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARANKVDQTIDAAPFDSTPFTFDTQV 201
Query: 188 FVELL-----------------------NGESEGLLQLPTDKALLEDPEFRRYVELYAKD 224
F+E+L +G G ++L +D AL DP + + +
Sbjct: 202 FLEVLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMRLQSDFALAHDPRTACIWQGFVNE 261
Query: 225 EDAFFRDYAASHKKLSELG 243
+ + A+ KL+ LG
Sbjct: 262 QAFMAASFRAAMSKLAVLG 280
>pdb|3VLM|A Chain A, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLM|B Chain B, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
Length = 737
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 124/331 (37%), Gaps = 111/331 (33%)
Query: 27 YKNCAPIMLRLAWHDAGTY-DVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y + P+ +R+AWH AGTY + + G G R S N L A +K K
Sbjct: 83 YGHYGPLFIRMAWHSAGTYRTADGRGGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQK 142
Query: 86 H-PKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS-------KISPKE----------- 126
+ KI++ADL LAG VA+E G T + GR+D+ P++
Sbjct: 143 YGQKISWADLMILAGNVAIESMGFKTFGYAGGREDAFEEDKAVNWGPEDEFETQERFDEP 202
Query: 127 GRL----------------------PDAKRGAPHLRDIFYRMGLSDKDIVAL-SGGHTLG 163
G + PD + A ++R F R ++DK+ AL +GGHT G
Sbjct: 203 GEIQEGLGASVMGLIYVNPEGPDGNPDPEASAKNIRQTFDRAAMNDKETAALIAGGHTFG 262
Query: 164 RAH----PER--------------------------------SGFDGPWTREPLKFDNSY 187
+ H PE SG +GPWT+ P ++D Y
Sbjct: 263 KVHGADDPEENLGPEPEAAPIEQQGLGWQNKNGNSKGGEMITSGIEGPWTQSPTEWDMGY 322
Query: 188 FVELLNGESE------GLLQ--------------------------LPTDKALLEDPEFR 215
LL+ E E G Q L TD AL DP++R
Sbjct: 323 INNLLDYEWEPEKGPGGAWQWAPKSEELKNSVPDAHDPDEKQTPMMLTTDIALKRDPDYR 382
Query: 216 RYVELYAKDEDAFFRDYAASHKKLSELGFSP 246
+E + ++ F ++A + KL+ P
Sbjct: 383 EVMETFQENPMEFGMNFAKAWYKLTHRDMGP 413
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 37/198 (18%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS---IRNEEEYSHGSNNGLKIALDFCEEVKAKH---- 86
+++ AW A TY + K GG NG+ + ++ + L+ L E ++ +
Sbjct: 463 LVKTAWASASTYRDSDKRGGANGARLRLEPQKNWEVNEPEQLETVLGTLENIQTEFNDSR 522
Query: 87 ---PKITYADLYQLAGVVAVEVTGGPT-----VDFVPGRKDSKISPKEGRLPDAKRGAP- 137
+++ ADL L G AVE + F PGR D+ P+ P P
Sbjct: 523 SDGTQVSLADLIVLGGNAAVEQAAANAGYDVEIPFEPGRVDA--GPEHTDAPSFDALKPK 580
Query: 138 ------HLRDIFYR------------MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTRE 179
+++D R + L+ ++ AL GG A+ + + G +T E
Sbjct: 581 VDGVRNYIQDDITRPAEEVLVDNADLLNLTASELTALIGGMRSIGANYQDTDL-GVFTDE 639
Query: 180 PLKFDNSYFVELLNGESE 197
P N +FV LL+ +E
Sbjct: 640 PETLTNDFFVNLLDMGTE 657
>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
pdb|1MNP|A Chain A, Manganese Peroxidase
pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
Length = 357
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 34/259 (13%)
Query: 19 RDLRALIAYKNC---APIMLRLAWHDAGTYDVNT---KTGGPNGSIR--NEEEYSHGSNN 70
+DL+ I C A ++RL +HDA + GG +GS+ E + +NN
Sbjct: 22 QDLQETIFQNECGEDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSANN 81
Query: 71 GLKIALDFCEEVKAKHPKITYADLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRL 129
G+ +++ KH I+ ADL Q AG VA+ G P ++F+ GR + I+ +G +
Sbjct: 82 GIDDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLI 141
Query: 130 PDAKRGAPHLRDIFYRM-GLSDKDIVALSGGHTLGRAHPERSGFD-GPWTREPLKFDNSY 187
P+ + + F G + ++V+L H++ RA D P+ P FD
Sbjct: 142 PEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARADKVDQTIDAAPFDSTPFTFDTQV 201
Query: 188 FVELL-----------------------NGESEGLLQLPTDKALLEDPEFRRYVELYAKD 224
F+E+L +G G ++L +D AL DP + + +
Sbjct: 202 FLEVLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMRLQSDFALAHDPRTACIWQGFVNE 261
Query: 225 EDAFFRDYAASHKKLSELG 243
+ + A+ KL+ LG
Sbjct: 262 QAFMAASFRAAMSKLAVLG 280
>pdb|1UB2|A Chain A, Crystal Structure Of Catalase-Peroxidase From
Synechococcus Pcc 7942
Length = 720
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 88/364 (24%), Positives = 132/364 (36%), Gaps = 126/364 (34%)
Query: 9 EYLKEIDKA-RRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGS 57
E ++++D A ++DL+AL+ + + +M+RL WH AGTY + GG G+
Sbjct: 53 EEVQKLDAALKQDLQALMTDSQDWWPADWGHYGGLMIRLTWHAAGTYRIADGRGGAGTGN 112
Query: 58 IRNEEEYSHGSNNGLKIALDFCEEVKAKH-PKITYADLYQLAGVVAVEVTGGPTVDFVPG 116
R S N L A +K K+ K+++ADL AG +A E G T F G
Sbjct: 113 QRFAPLNSWPDNTNLDKARRLLWPIKQKYGNKLSWADLIAYAGTIAYESMGLKTFGFAFG 172
Query: 117 R-------KDSKISPKEGRL--------------------------------------PD 131
R KD P++ PD
Sbjct: 173 REDIWHPEKDIYWGPEKEWFPPSTNPNSRYTGDRELENPLAAVTMGLIYVNPEGVDGNPD 232
Query: 132 AKRGAPHLRDIFYRMGLSDKDIVALS-GGHTLGRAH---------PE------------- 168
+ A +R F RM ++D++ VAL+ GGHT+G+ H PE
Sbjct: 233 PLKTAHDVRVTFARMAMNDEETVALTAGGHTVGKCHGNGNAALLGPEPEGADVEDQGLGW 292
Query: 169 -------------RSGFDGPWTREPLKFDNSYFV--------------------ELLNGE 195
SG +G WT P ++DN YF E +N
Sbjct: 293 INKTQSGIGRNAVTSGLEGAWTPHPTQWDNGYFAVCSLNYDWELKKNPAGAWQWEPINPR 352
Query: 196 SE-------------GLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSEL 242
E L+ D A+ DPE+R+ E + +D F +A + KL+
Sbjct: 353 EEDLPVDVEDPSIRRNLVMTDADMAMKMDPEYRKISERFYQDPAYFADVFARAWFKLTHR 412
Query: 243 GFSP 246
P
Sbjct: 413 DMGP 416
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 93/270 (34%), Gaps = 84/270 (31%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS---IRNEEEYSHGSNNGLKIALDFCEEVKAKHPKIT 90
++ AW A TY + K GG NG+ + ++++ + L L E + A T
Sbjct: 462 LVSTAWDSARTYRNSDKRGGANGARIRLAPQKDWEGNEPDRLPKVLAVLEGISAAT-GAT 520
Query: 91 YADLYQLAGVVAVEVTGGP-----TVDFVPGRKDSKISPKEG------------------ 127
AD+ LAG V VE + F PGR D+ +
Sbjct: 521 VADVIVLAGNVGVEQKARAAGVEIVLPFAPGRGDATAEQTDTESFAVLEPIHDAIATGSS 580
Query: 128 -----RLPDAKRGAPHLRDIFYRMGLSDKDIVALSGG-HTLGRAH--------PERSGFD 173
RL + A L +GL+ ++ L GG LG H +R G
Sbjct: 581 RTMRQRLKNCCLIATQL------LGLTAPEMTVLIGGLRVLGTNHGGTKHVVFTDREGV- 633
Query: 174 GPWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLE----------------------D 211
N +FV L + L P K L E +
Sbjct: 634 ---------LTNDFFVNLTD---MNYLWKPAGKNLYEICDRKTNQVKWTATRVDLVFGSN 681
Query: 212 PEFRRYVELYAKDED--AFFRDYAASHKKL 239
R Y ELYA+D++ F RD+ A+ K+
Sbjct: 682 SILRAYSELYAQDDNKEKFVRDFVAAWTKV 711
>pdb|3RRW|A Chain A, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
pdb|3RRW|B Chain B, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
Length = 268
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 71/161 (44%), Gaps = 34/161 (21%)
Query: 32 PIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEEVK------AK 85
P +L+LA +DA TYD TK+GG NGSIR E S N GL L EEVK +K
Sbjct: 33 PSLLKLALNDAXTYDKATKSGGANGSIRFSSELSRAENEGLSDGLSLIEEVKKEIDSISK 92
Query: 86 HPKITYADLYQLAGVVAVEVT---------GGPT------------------VDFVPGRK 118
I+YAD+ QLAG AV+ T GG D GR
Sbjct: 93 GGPISYADIIQLAGQSAVKFTYLASAIRKCGGNEEKGNLLYTAYGSAGQWGLFDRNFGRS 152
Query: 119 DSKISPKEGRLPD-AKRGAPHLRDIFYRMGLSDKDIVALSG 158
D+ + EGR+P K +D F +GL + + S
Sbjct: 153 DATEADPEGRVPQWGKATVQEXKDKFIAVGLGPRQLAVXSA 193
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 107/268 (39%), Gaps = 53/268 (19%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 34 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 93
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 94 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPQPFFTLPQLKDSF 153
Query: 144 YRMGLS-DKDIVALSGGHTLGRAHP----------ERSGFDGPW---------------- 176
+GL+ D+VALSGGHT G+ +G P
Sbjct: 154 RNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLN 213
Query: 177 ----------TREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVEL---YAK 223
R P FDN Y+V L E +GL+Q +D+ L P + L +A
Sbjct: 214 GNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSPNATDTIPLVRSFAN 269
Query: 224 DEDAFFRDYAASHKKLSELGFSPGSGSK 251
FF + + ++ + +P +G++
Sbjct: 270 STQTFFNAFVEAMDRMGNI--TPLTGTQ 295
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 107/268 (39%), Gaps = 53/268 (19%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 33 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 92
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 93 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSF 152
Query: 144 YRMGLS-DKDIVALSGGHTLGRAHP----------ERSGFDGPW---------------- 176
+GL+ D+VALSGGHT G+ +G P
Sbjct: 153 RNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLN 212
Query: 177 ----------TREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVEL---YAK 223
R P FDN Y+V L E +GL+Q +D+ L P + L +A
Sbjct: 213 GNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSPNATDTIPLVRSFAN 268
Query: 224 DEDAFFRDYAASHKKLSELGFSPGSGSK 251
FF + + ++ + +P +G++
Sbjct: 269 STQTFFNAFVEAMDRMGNI--TPLTGTQ 294
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 107/268 (39%), Gaps = 53/268 (19%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 34 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 93
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 94 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSF 153
Query: 144 YRMGLS-DKDIVALSGGHTLGRAHP----------ERSGFDGPW---------------- 176
+GL+ D+VALSGGHT G+ +G P
Sbjct: 154 RNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLN 213
Query: 177 ----------TREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVEL---YAK 223
R P FDN Y+V L E +GL+Q +D+ L P + L +A
Sbjct: 214 GNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSPNATDTIPLVRSFAN 269
Query: 224 DEDAFFRDYAASHKKLSELGFSPGSGSK 251
FF + + ++ + +P +G++
Sbjct: 270 STQTFFNAFVEAMDRMGNI--TPLTGTQ 295
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 107/268 (39%), Gaps = 53/268 (19%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 33 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 92
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 93 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSF 152
Query: 144 YRMGLS-DKDIVALSGGHTLGRAHP----------ERSGFDGPW---------------- 176
+GL+ D+VALSGGHT G+ +G P
Sbjct: 153 RNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLN 212
Query: 177 ----------TREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVEL---YAK 223
R P FDN Y+V L E +GL+Q +D+ L P + L +A
Sbjct: 213 GNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSPNATDTIPLVRSFAN 268
Query: 224 DEDAFFRDYAASHKKLSELGFSPGSGSK 251
FF + + ++ + +P +G++
Sbjct: 269 STQTFFNAFVEAMDRMGNI--TPLTGTQ 294
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 107/268 (39%), Gaps = 53/268 (19%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 34 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 93
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 94 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSF 153
Query: 144 YRMGLS-DKDIVALSGGHTLGRAHP----------ERSGFDGPW---------------- 176
+GL+ D+VALSGGHT G+ +G P
Sbjct: 154 RNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLN 213
Query: 177 ----------TREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVEL---YAK 223
R P FDN Y+V L E +GL+Q +D+ L P + L +A
Sbjct: 214 GNLSALVDMDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSPNATDTIPLVRSFAN 269
Query: 224 DEDAFFRDYAASHKKLSELGFSPGSGSK 251
FF + + ++ + +P +G++
Sbjct: 270 STQTFFNAFVEAMDRMGNI--TPLTGTQ 295
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 107/268 (39%), Gaps = 53/268 (19%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 34 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 93
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 94 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSF 153
Query: 144 YRMGLS-DKDIVALSGGHTLGRAHP----------ERSGFDGPW---------------- 176
+GL+ D+VALSGGHT G+ +G P
Sbjct: 154 RNVGLNRSSDLVALSGGHTFGKNQCRSIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLN 213
Query: 177 ----------TREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVEL---YAK 223
R P FDN Y+V L E +GL+Q +D+ L P + L +A
Sbjct: 214 GNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSPNATDTIPLVRSFAN 269
Query: 224 DEDAFFRDYAASHKKLSELGFSPGSGSK 251
FF + + ++ + +P +G++
Sbjct: 270 STQTFFNAFVEAMDRMGNI--TPLTGTQ 295
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 107/268 (39%), Gaps = 53/268 (19%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 33 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 92
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 93 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSF 152
Query: 144 YRMGLS-DKDIVALSGGHTLGRAHP----------ERSGFDGPW---------------- 176
+GL+ D+VALSGGHT G+ +G P
Sbjct: 153 RNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLN 212
Query: 177 ----------TREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVEL---YAK 223
R P FDN Y+V L E +GL+Q +D+ L P + L +A
Sbjct: 213 GNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSPNATDTIPLVRSFAN 268
Query: 224 DEDAFFRDYAASHKKLSELGFSPGSGSK 251
FF + + ++ + +P +G++
Sbjct: 269 STQTFFNAFVEAMDRMGNI--TPLTGTQ 294
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 107/268 (39%), Gaps = 53/268 (19%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 34 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 93
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 94 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSF 153
Query: 144 YRMGLS-DKDIVALSGGHTLGRAHP----------ERSGFDGPW---------------- 176
+GL+ D+VALSGGHT G+ +G P
Sbjct: 154 RNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLN 213
Query: 177 ----------TREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVEL---YAK 223
R P FDN Y+V L E +GL+Q +D+ L P + L +A
Sbjct: 214 GNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSPNATDTIPLVRSFAN 269
Query: 224 DEDAFFRDYAASHKKLSELGFSPGSGSK 251
FF + + ++ + +P +G++
Sbjct: 270 STQTFFNAFVEAMDRMGNI--TPLTGTQ 295
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 111/265 (41%), Gaps = 55/265 (20%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYSHGSNN--GLKIALDFCEEVKAKHPKI- 89
++RL +HD + N GSI +E+ +N+ G + + ++ P +
Sbjct: 38 LIRLHFHDCFVLGCDASILLDNSGSIISEKNAGPNANSARGFNVVDNIKTALENACPGVV 97
Query: 90 TYADLYQLAGVVAVEVTGGP--TVDFVPGRKDSKISPKEG---RLPDAKRGAPHLRDIFY 144
+ D+ LA +V ++GGP TVD GR+D+ + + G +P +G ++ F
Sbjct: 98 SCTDVLALASQASVSLSGGPSWTVDL--GRRDTLTANQAGANSSIPSPTQGLSNITSKFS 155
Query: 145 RMGLSDKDIVALSGGHTLGRAH---------------------------------PER-- 169
+GL+ D+VALSG HT GRA P++
Sbjct: 156 AVGLNTNDLVALSGAHTFGRATCGVFSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGR 215
Query: 170 -SGFDGPWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRR--YVELYAKDED 226
SG P FDN+YF L + GLLQ +D+ L V +A ++
Sbjct: 216 GSGSTNLDLSTPDAFDNNYFTNLQ--SNNGLLQ--SDQELFSTTGSATIAIVTSFASNQT 271
Query: 227 AFFRDYAASHKKLSELGFSPGSGSK 251
FF+ +A S + + SP +GS
Sbjct: 272 LFFQAFAQSMINMGNI--SPLTGSS 294
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 107/268 (39%), Gaps = 53/268 (19%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 33 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 92
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 93 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSF 152
Query: 144 YRMGLS-DKDIVALSGGHTLGRAHP----------ERSGFDGPW---------------- 176
+GL+ D+VALSGGH+ G+ +G P
Sbjct: 153 RNVGLNRSSDLVALSGGHSFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLN 212
Query: 177 ----------TREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVEL---YAK 223
R P FDN Y+V L E +GL+Q +D+ L P + L +A
Sbjct: 213 GNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSPNATDTIPLVRSFAN 268
Query: 224 DEDAFFRDYAASHKKLSELGFSPGSGSK 251
FF + + ++ + +P +G++
Sbjct: 269 STQTFFNAFVEAMDRMGNI--TPLTGTQ 294
>pdb|1MWV|A Chain A, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|1MWV|B Chain B, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|2B2O|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2O|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2Q|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2Q|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2R|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2R|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2S|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
pdb|2B2S|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
Length = 714
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 102/277 (36%), Gaps = 93/277 (33%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEE 62
++ +RDL AL+ + + + +R+AWH AGTY GG G R
Sbjct: 42 DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAGTYRTADGRGGAGEGQQRFAP 101
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK 121
S N L A +K K+ + I++ADL L G VA+E G T F GR D+
Sbjct: 102 LNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW 161
Query: 122 -------------------------------------------ISPK--EGRLPDAKRGA 136
++P+ +G PD A
Sbjct: 162 EPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGN-PDPVAAA 220
Query: 137 PHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH-----------PE---------------- 168
+RD F RM ++D++ VAL +GGHT G+ H PE
Sbjct: 221 RDIRDTFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYR 280
Query: 169 --------RSGFDGPWTREPLKFDNSYFVELLNGESE 197
SG + WT P ++ +++F L E E
Sbjct: 281 TGKGADAITSGLEVTWTTTPTQWSHNFFENLFGYEWE 317
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS---I 58
+P VD + D A +L+A ++A ++ AW A T+ + K GG NG+ +
Sbjct: 416 IPAVDHPLIDAADAA--ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRL 473
Query: 59 RNEEEYSHGSNNGLKIALDFCEEVKAKH-------PKITYADLYQLAGVVAVEVTG---- 107
++++ L L+ E ++ +++ ADL LAG VE
Sbjct: 474 APQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAG 533
Query: 108 -GPTVDFVPGRKDS 120
TV F PGR D+
Sbjct: 534 HAVTVPFAPGRADA 547
>pdb|2DV1|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg
pdb|2DV1|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg
Length = 748
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 102/277 (36%), Gaps = 93/277 (33%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEE 62
++ +RDL AL+ + + + +R+AWH AGTY GG G R
Sbjct: 76 DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAGTYRTADGRGGAGEGQQRFAP 135
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK 121
S N L A +K K+ + I++ADL L G VA+E G T F GR D+
Sbjct: 136 LNSWPENANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW 195
Query: 122 -------------------------------------------ISPK--EGRLPDAKRGA 136
++P+ +G PD A
Sbjct: 196 EPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGN-PDPVAAA 254
Query: 137 PHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH-----------PE---------------- 168
+RD F RM ++D++ VAL +GGHT G+ H PE
Sbjct: 255 RDIRDTFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYR 314
Query: 169 --------RSGFDGPWTREPLKFDNSYFVELLNGESE 197
SG + WT P ++ +++F L E E
Sbjct: 315 TGKGADAITSGLEVTWTTTPTQWSHNFFENLFGYEWE 351
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS---I 58
+P VD + D A +L+A ++A ++ AW A T+ + K GG NG+ +
Sbjct: 450 IPAVDHPLIDAADAA--ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRL 507
Query: 59 RNEEEYSHGSNNGLKIALDFCEEVKAKH-------PKITYADLYQLAGVVAVEVTG---- 107
++++ L L+ E ++ +++ ADL LAG VE
Sbjct: 508 APQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAG 567
Query: 108 -GPTVDFVPGRKDS 120
TV F PGR D+
Sbjct: 568 HAVTVPFAPGRADA 581
>pdb|1X7U|A Chain A, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
pdb|1X7U|B Chain B, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
Length = 748
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 102/277 (36%), Gaps = 93/277 (33%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEE 62
++ +RDL AL+ + + + +R+AWH AGTY GG G R
Sbjct: 76 DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAGTYRTADGRGGAGEGQQRFAP 135
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK 121
S N L A +K K+ + I++ADL L G VA+E G T F GR D+
Sbjct: 136 LNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW 195
Query: 122 -------------------------------------------ISPK--EGRLPDAKRGA 136
++P+ +G PD A
Sbjct: 196 EPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGN-PDPVAAA 254
Query: 137 PHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH-----------PERSGFDG---------- 174
+RD F RM ++D++ VAL +GGHT G+ H PE +G +
Sbjct: 255 RDIRDTFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYR 314
Query: 175 --------------PWTREPLKFDNSYFVELLNGESE 197
WT P ++ +++F L E E
Sbjct: 315 TGKGADAITTGLEVTWTTTPTQWSHNFFENLFGYEWE 351
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS---I 58
+P VD + D A +L+A ++A ++ AW A T+ + K GG NG+ +
Sbjct: 450 IPAVDHPLIDAADAA--ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRL 507
Query: 59 RNEEEYSHGSNNGLKIALDFCEEVKAKH-------PKITYADLYQLAGVVAVEVTG---- 107
++++ L L+ E ++ +++ ADL LAG VE
Sbjct: 508 APQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAG 567
Query: 108 -GPTVDFVPGRKDS 120
TV F PGR D+
Sbjct: 568 HAVTVPFAPGRADA 581
>pdb|3N3S|A Chain A, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
pdb|3N3S|B Chain B, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
Length = 748
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 102/277 (36%), Gaps = 93/277 (33%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEE 62
++ +RDL AL+ + + + +R+AWH AGTY GG G R
Sbjct: 76 DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAGTYRTADGRGGAGEGQQRFAP 135
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK 121
S N L A +K K+ + I++ADL L G VA+E G T F GR D+
Sbjct: 136 LNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW 195
Query: 122 -------------------------------------------ISPK--EGRLPDAKRGA 136
++P+ +G PD A
Sbjct: 196 EPADVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGN-PDPVAAA 254
Query: 137 PHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH-----------PE---------------- 168
+RD F RM ++D++ VAL +GGHT G+ H PE
Sbjct: 255 RDIRDTFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYR 314
Query: 169 --------RSGFDGPWTREPLKFDNSYFVELLNGESE 197
SG + WT P ++ +++F L E E
Sbjct: 315 TGKGADAITSGLEVTWTTTPTQWSHNFFENLFGYEWE 351
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS---I 58
+P VD + D A +L+A ++A ++ AW A T+ + K GG NG+ +
Sbjct: 450 IPAVDHPLIDAADAA--ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRL 507
Query: 59 RNEEEYSHGSNNGLKIALDFCEEVKAKH-------PKITYADLYQLAGVVAVEVTG---- 107
++++ L L+ E ++ +++ ADL LAG VE
Sbjct: 508 APQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAG 567
Query: 108 -GPTVDFVPGRKDS 120
TV F PGR D+
Sbjct: 568 HAVTVPFAPGRADA 581
>pdb|2FXG|A Chain A, Crystal Structure Of Katg At Ph 4.5
pdb|2FXG|B Chain B, Crystal Structure Of Katg At Ph 4.5
pdb|2FXH|A Chain A, Crystal Structure Of Katg At Ph 6.5
pdb|2FXH|B Chain B, Crystal Structure Of Katg At Ph 6.5
pdb|3N3N|A Chain A, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3N|B Chain B, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3P|A Chain A, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
pdb|3N3P|B Chain B, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
Length = 748
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 102/277 (36%), Gaps = 93/277 (33%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEE 62
++ +RDL AL+ + + + +R+AWH AGTY GG G R
Sbjct: 76 DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAGTYRTADGRGGAGEGQQRFAP 135
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK 121
S N L A +K K+ + I++ADL L G VA+E G T F GR D+
Sbjct: 136 LNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW 195
Query: 122 -------------------------------------------ISPK--EGRLPDAKRGA 136
++P+ +G PD A
Sbjct: 196 EPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGN-PDPVAAA 254
Query: 137 PHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH-----------PE---------------- 168
+RD F RM ++D++ VAL +GGHT G+ H PE
Sbjct: 255 RDIRDTFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYR 314
Query: 169 --------RSGFDGPWTREPLKFDNSYFVELLNGESE 197
SG + WT P ++ +++F L E E
Sbjct: 315 TGKGADAITSGLEVTWTTTPTQWSHNFFENLFGYEWE 351
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS---I 58
+P VD + D A +L+A ++A ++ AW A T+ + K GG NG+ +
Sbjct: 450 IPAVDHPLIDAADAA--ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRL 507
Query: 59 RNEEEYSHGSNNGLKIALDFCEEVKAKH-------PKITYADLYQLAGVVAVEVTG---- 107
++++ L L+ E ++ +++ ADL LAG VE
Sbjct: 508 APQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAG 567
Query: 108 -GPTVDFVPGRKDS 120
TV F PGR D+
Sbjct: 568 HAVTVPFAPGRADA 581
>pdb|3N3Q|A Chain A, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
pdb|3N3Q|B Chain B, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
Length = 748
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 102/277 (36%), Gaps = 93/277 (33%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEE 62
++ +RDL AL+ + + + +R+AWH AGTY GG G R
Sbjct: 76 DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAGTYRTADGRGGAGEGQQRFAP 135
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK 121
S N L A +K K+ + I++ADL L G VA+E G T F GR D+
Sbjct: 136 LNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW 195
Query: 122 -------------------------------------------ISPK--EGRLPDAKRGA 136
++P+ +G PD A
Sbjct: 196 EPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGN-PDPVAAA 254
Query: 137 PHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH-----------PERSGFDG---------- 174
+RD F RM ++D++ VAL +GGHT G+ H PE +G +
Sbjct: 255 RDIRDTFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYR 314
Query: 175 --------------PWTREPLKFDNSYFVELLNGESE 197
WT P ++ +++F L E E
Sbjct: 315 TGKGADAITTGLEVTWTTTPTQWSHNFFENLFGYEWE 351
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS---I 58
+P VD + D A +L+A ++A ++ AW A T+ + K GG NG+ +
Sbjct: 450 IPAVDHPLIDAADAA--ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRL 507
Query: 59 RNEEEYSHGSNNGLKIALDFCEEVKAKH-------PKITYADLYQLAGVVAVEVTG---- 107
++++ L L+ E ++ +++ ADL LAG VE
Sbjct: 508 APQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAG 567
Query: 108 -GPTVDFVPGRKDS 120
TV F PGR D+
Sbjct: 568 HAVTVPFAPGRADA 581
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 106/268 (39%), Gaps = 53/268 (19%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 33 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 92
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 93 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSF 152
Query: 144 YRMGLS-DKDIVALSGGHTLGRAHP----------ERSGFDGPW---------------- 176
+GL+ D+VAL GGHT G+ +G P
Sbjct: 153 RNVGLNRSSDLVALYGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLN 212
Query: 177 ----------TREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVEL---YAK 223
R P FDN Y+V L E +GL+Q +D+ L P + L +A
Sbjct: 213 GNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSPNATDTIPLVRSFAN 268
Query: 224 DEDAFFRDYAASHKKLSELGFSPGSGSK 251
FF + + ++ + +P +G++
Sbjct: 269 STQTFFNAFVEAMDRMGNI--TPLTGTQ 294
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 98/232 (42%), Gaps = 27/232 (11%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSIR--NEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ G + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPE---GFDSVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFVELL------------NGE 195
S ++V L H++ A G P+ P FD+ +F+E GE
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 196 SEGLLQ----LPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELG 243
++ LQ L +D L DP+ + ++ +AA+ K++ LG
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 27/232 (11%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSIR--NEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPQD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFVELL------------NGE 195
S ++V L H++ A G P+ P FD+ +F+E GE
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 196 SEGLLQ----LPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELG 243
++ LQ L +D L DP+ + ++ +AA+ K++ LG
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 27/232 (11%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSIR--NEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFVELL------------NGE 195
S ++V+L H++ A G P+ P FD+ +F+E GE
Sbjct: 158 SPVEVVSLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 196 SEGLLQ----LPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELG 243
++ LQ L +D L DP+ + ++ +AA+ K++ LG
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 106/268 (39%), Gaps = 53/268 (19%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL + D + N + E+ + G+ N G + V++ P
Sbjct: 34 AASILRLHFEDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 93
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 94 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSF 153
Query: 144 YRMGLS-DKDIVALSGGHTLGRAHP----------ERSGFDGPW---------------- 176
+GL+ D+VALSGGHT G+ +G P
Sbjct: 154 RNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLN 213
Query: 177 ----------TREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVEL---YAK 223
R P FDN Y+V L E +GL+Q +D+ L P + L +A
Sbjct: 214 GNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSPNATDTIPLVRSFAN 269
Query: 224 DEDAFFRDYAASHKKLSELGFSPGSGSK 251
FF + + ++ + +P +G++
Sbjct: 270 STQTFFNAFVEAMDRMGNI--TPLTGTQ 295
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 27/232 (11%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSIR--NEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFVELL------------NGE 195
S ++V L H++ A G P+ P FD+ +F+E GE
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 196 SEGLLQ----LPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELG 243
++ LQ L +D L DP+ + + ++ +AA+ K++ LG
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSFVNNQPKIQNRFAATMSKMALLG 269
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 50/214 (23%)
Query: 82 VKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAP 137
V++ P+ ++ ADL +A +V + GGP+ GR+DS + LP P
Sbjct: 87 VESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLP 146
Query: 138 HLRDIFYRMGLS-DKDIVALSGGHTLGRAHP----------ERSGFDGPW---------- 176
L+D F +GL+ D+VALSGGHT G+ +G P
Sbjct: 147 QLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLR 206
Query: 177 ----------------TREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVEL 220
R P FDN Y+V L E +GL+Q +D+ L P + L
Sbjct: 207 GLCPLNGNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSPNATDTIPL 262
Query: 221 ---YAKDEDAFFRDYAASHKKLSELGFSPGSGSK 251
+A FF + + ++ + +P +G++
Sbjct: 263 VRSFANSTQTFFNAFVEAMDRMGNI--TPLTGTQ 294
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 27/232 (11%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSIR--NEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFVELL------------NGE 195
S ++V L H++ A G P+ P FD+ +F+E GE
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPQVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 196 SEGLLQ----LPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELG 243
++ LQ L +D L DP+ + ++ +AA+ K++ LG
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 27/232 (11%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSIR--NEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFVELL------------NGE 195
S ++V L H++ A G P+ P FD+ +F+E GE
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 196 SEGLLQ----LPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELG 243
++ LQ L +D L DP+ + ++ +AA+ K++ LG
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 27/232 (11%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSIR--NEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFVELL------------NGE 195
S ++V L H++ A G P+ P FD+ +F+E GE
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 196 SEGLLQ----LPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELG 243
++ LQ L +D L DP+ + ++ +AA+ K++ LG
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 27/232 (11%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSIR--NEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFVELL------------NGE 195
S ++V L H++ A G P+ P FD+ +F+E GE
Sbjct: 158 SPVEVVWLLASHSIAAAAKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 196 SEGLLQ----LPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELG 243
++ LQ L +D L DP+ + ++ +AA+ K++ LG
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 27/232 (11%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSIR--NEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFVELL------------NGE 195
S ++V L H++ A G P+ P FD+ +F+E GE
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 196 SEGLLQ----LPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELG 243
++ LQ L +D L DP+ + ++ +AA+ K++ LG
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 27/232 (11%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSIR--NEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFVELL------------NGE 195
S ++V L H++ A G P+ P FD+ +F+E GE
Sbjct: 158 SPVEVVYLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 196 SEGLLQ----LPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELG 243
++ LQ L +D L DP+ + ++ +AA+ K++ LG
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 27/232 (11%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSIR--NEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFVELL------------NGE 195
S ++V L H++ A G P+ P FD+ +F+E GE
Sbjct: 158 SPVEVVWLLASHSIAAADGVDPSIPGTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 196 SEGLLQ----LPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELG 243
++ LQ L +D L DP+ + ++ +AA+ K++ LG
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 103/265 (38%), Gaps = 64/265 (24%)
Query: 34 MLRLAWHDAGTYDVNT-------------KTGGPNG-SIRNEEEYSHGSNNGLKIALDFC 79
+LRL +HD + KT GPN SIR G ++
Sbjct: 36 LLRLHFHDCFVQGCDASVLLDDTSNFTGEKTAGPNANSIR-----------GFEVIDTIK 84
Query: 80 EEVKAKHPKI-TYADLYQLAGVVAVEVTGGPTVDFVPGRKDS---KISPKEGRLPDAKRG 135
+V++ P + + AD+ +A +V GG + + + GR+DS +S LP
Sbjct: 85 SQVESLCPGVVSCADILAVAARDSVVALGGASWNVLLGRRDSTTASLSSANSDLPAPFFN 144
Query: 136 APHLRDIFYRMGLSDKDIVALSGGHTLGRAHP--------ERSGFDGPWTRE-------- 179
L F G + K++V LSG HT+G+A S D + +
Sbjct: 145 LSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRTRIYNESNIDPTYAKSLQANCPSV 204
Query: 180 -------------PLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDED 226
P KFDN+Y++ L N +GLL +D+ L V Y+ +
Sbjct: 205 GGDTNLSPFDVTTPNKFDNAYYINLRN--KKGLLH--SDQQLFNGVSTDSQVTAYSNNAA 260
Query: 227 AFFRDYAASHKKLSELGFSPGSGSK 251
F D+ + K+ L SP +G+
Sbjct: 261 TFNTDFGNAMIKMGNL--SPLTGTS 283
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 27/232 (11%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSIR--NEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPGPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFVELL------------NGE 195
S ++V L H++ A G P+ P FD+ +F+E GE
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 196 SEGLLQ----LPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELG 243
++ LQ L +D L DP+ + ++ +AA+ K++ LG
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 107/266 (40%), Gaps = 57/266 (21%)
Query: 34 MLRLAWHDAGTYDVNTKTG-GPNGSIRNEEEYSHGSNN--GLKIALDFCEEVKAKHPKI- 89
++RL +HD + GSI++E+ N+ G + + ++ P +
Sbjct: 37 LIRLHFHDCFVNGCDASILLDDTGSIQSEKNAGPNVNSARGFNVVDNIKTALENACPGVV 96
Query: 90 TYADLYQLAGVVAVEVTGGPTVDFVPGRKDS---KISPKEGRLPDAKRGAPHLRDIFYRM 146
+ +D+ LA +V + GGP+ + GR+DS ++ +P ++ F +
Sbjct: 97 SCSDVLALASEASVSLAGGPSWTVLLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAV 156
Query: 147 GLSDKDIVALSGGHTLGRAHPERSG--------FDGPWTREPL----------------- 181
GL+ D+VALSG HT GRA R G F G +P
Sbjct: 157 GLNTNDLVALSGAHTFGRA---RCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNG 213
Query: 182 --------------KFDNSYFVELLNGESEGLLQLPTDKALLED--PEFRRYVELYAKDE 225
FDN+YF L ++GLLQ +D+ L V +A ++
Sbjct: 214 SASTITNLDLSTPDAFDNNYFANL--QSNDGLLQ--SDQELFSTTGSSTIAIVTSFASNQ 269
Query: 226 DAFFRDYAASHKKLSELGFSPGSGSK 251
FF+ +A S + + SP +GS
Sbjct: 270 TLFFQAFAQSMINMGNI--SPLTGSN 293
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 27/232 (11%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSIR--NEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPGPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFVELL------------NGE 195
S ++V L H++ A G P+ P FD+ +F+E GE
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 196 SEGLLQ----LPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELG 243
++ LQ L +D L DP+ + ++ +AA+ K++ LG
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 27/232 (11%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSIR--NEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPGPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFVELL------------NGE 195
S ++V L H++ A G P+ P FD+ +F+E GE
Sbjct: 158 SPVEVVWLLASHSIAAADGVDPSIPGTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 196 SEGLLQ----LPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELG 243
++ LQ L +D L DP+ + ++ +AA+ K++ LG
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 17/175 (9%)
Query: 89 ITYADLYQLAGVV-AVEVTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMG 147
+++ D Q AG V A GGP + F+ GR + +G +PD A + +G
Sbjct: 104 VSFGDFVQFAGAVGAANCAGGPRLQFLAGRSNISQPSPDGLVPDPTDSADKILARMADIG 163
Query: 148 LSDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFVE-LLNGES--------- 196
S ++V L H++ + + G P+ P FD +FVE LL+G
Sbjct: 164 FSPTEVVHLLASHSIAAQYEVDTDVAGSPFDSTPSVFDTQFFVESLLHGTQFTGSGQGGE 223
Query: 197 -----EGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFSP 246
G +L +D AL DP + ++ A ++ A +L+ +G P
Sbjct: 224 VMSPIPGEFRLQSDFALSRDPRTACEWQALVNNQQAMVNNFEAVMSRLAVIGQIP 278
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 46/196 (23%)
Query: 89 ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKE--GRLPDAKRGAPHLRDIFYRM 146
++ AD+ LA +V ++GGP GRKD ++ + LP + F +
Sbjct: 92 VSCADILTLAARDSVVLSGGPGWRVALGRKDGLVANQNSANNLPSPFEPLDAIIAKFVAV 151
Query: 147 GLSDKDIVALSGGHTLGRA----------------HP----ERSGFDGPWTREPL----- 181
L+ D+VALSG HT G+A +P E S T PL
Sbjct: 152 NLNITDVVALSGAHTFGQAKCAVFSNRLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSN 211
Query: 182 -----------KFDNSYFVELLNGESEGLLQLPTDKAL----LEDPEFRRYVELYAKDED 226
FDN+YF LL E +GLL +D+ L L ++ VE Y++ +
Sbjct: 212 ITAPLDRSTTDTFDNNYFKNLL--EGKGLLS--SDQILFSSDLAVNTTKKLVEAYSRSQS 267
Query: 227 AFFRDYAASHKKLSEL 242
FFRD+ + ++ +
Sbjct: 268 LFFRDFTCAMIRMGNI 283
>pdb|2DV2|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
pdb|2DV2|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
Length = 748
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 101/277 (36%), Gaps = 93/277 (33%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEE 62
++ +RDL AL+ + + + +R+A H AGTY GG G R
Sbjct: 76 DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAXHSAGTYRTADGRGGAGEGQQRFAP 135
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK 121
S N L A +K K+ + I++ADL L G VA+E G T F GR D+
Sbjct: 136 LNSWPENANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW 195
Query: 122 -------------------------------------------ISPK--EGRLPDAKRGA 136
++P+ +G PD A
Sbjct: 196 EPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGN-PDPVAAA 254
Query: 137 PHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH-----------PE---------------- 168
+RD F RM ++D++ VAL +GGHT G+ H PE
Sbjct: 255 RDIRDTFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYR 314
Query: 169 --------RSGFDGPWTREPLKFDNSYFVELLNGESE 197
SG + WT P ++ +++F L E E
Sbjct: 315 TGKGADAITSGLEVTWTTTPTQWSHNFFENLFGYEWE 351
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS---I 58
+P VD + D A +L+A ++A ++ AW A T+ + K GG NG+ +
Sbjct: 450 IPAVDHPLIDAADAA--ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRL 507
Query: 59 RNEEEYSHGSNNGLKIALDFCEEVKAKH-------PKITYADLYQLAGVVAVEVTG---- 107
++++ L L+ E ++ +++ ADL LAG VE
Sbjct: 508 APQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAG 567
Query: 108 -GPTVDFVPGRKDS 120
TV F PGR D+
Sbjct: 568 HAVTVPFAPGRADA 581
>pdb|3N3R|A Chain A, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
pdb|3N3R|B Chain B, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
Length = 748
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 101/277 (36%), Gaps = 93/277 (33%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEE 62
++ +RDL AL+ + + + +R+A H AGTY GG G R
Sbjct: 76 DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAXHSAGTYRTADGRGGAGEGQQRFAP 135
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK 121
S N L A +K K+ + I++ADL L G VA+E G T F GR D+
Sbjct: 136 LNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW 195
Query: 122 -------------------------------------------ISPK--EGRLPDAKRGA 136
++P+ +G PD A
Sbjct: 196 EPADVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGN-PDPVAAA 254
Query: 137 PHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH-----------PE---------------- 168
+RD F RM ++D++ VAL +GGHT G+ H PE
Sbjct: 255 RDIRDTFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYR 314
Query: 169 --------RSGFDGPWTREPLKFDNSYFVELLNGESE 197
SG + WT P ++ +++F L E E
Sbjct: 315 TGKGADAITSGLEVTWTTTPTQWSHNFFENLFGYEWE 351
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS---I 58
+P VD + D A +L+A ++A ++ AW A T+ + K GG NG+ +
Sbjct: 450 IPAVDHPLIDAADAA--ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRL 507
Query: 59 RNEEEYSHGSNNGLKIALDFCEEVKAKH-------PKITYADLYQLAGVVAVEVTG---- 107
++++ L L+ E ++ +++ ADL LAG VE
Sbjct: 508 APQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAG 567
Query: 108 -GPTVDFVPGRKDS 120
TV F PGR D+
Sbjct: 568 HAVTVPFAPGRADA 581
>pdb|2FXJ|A Chain A, Crystal Structure Of Katg At Ph 8.5
pdb|2FXJ|B Chain B, Crystal Structure Of Katg At Ph 8.5
pdb|3N3O|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
pdb|3N3O|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
Length = 748
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 101/277 (36%), Gaps = 93/277 (33%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEE 62
++ +RDL AL+ + + + +R+A H AGTY GG G R
Sbjct: 76 DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAXHSAGTYRTADGRGGAGEGQQRFAP 135
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK 121
S N L A +K K+ + I++ADL L G VA+E G T F GR D+
Sbjct: 136 LNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW 195
Query: 122 -------------------------------------------ISPK--EGRLPDAKRGA 136
++P+ +G PD A
Sbjct: 196 EPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGN-PDPVAAA 254
Query: 137 PHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH-----------PE---------------- 168
+RD F RM ++D++ VAL +GGHT G+ H PE
Sbjct: 255 RDIRDTFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYR 314
Query: 169 --------RSGFDGPWTREPLKFDNSYFVELLNGESE 197
SG + WT P ++ +++F L E E
Sbjct: 315 TGKGADAITSGLEVTWTTTPTQWSHNFFENLFGYEWE 351
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS---I 58
+P VD + D A +L+A ++A ++ AW A T+ + K GG NG+ +
Sbjct: 450 IPAVDHPLIDAADAA--ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRL 507
Query: 59 RNEEEYSHGSNNGLKIALDFCEEVKAKH-------PKITYADLYQLAGVVAVEVTG---- 107
++++ L L+ E ++ +++ ADL LAG VE
Sbjct: 508 APQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAG 567
Query: 108 -GPTVDFVPGRKDS 120
TV F PGR D+
Sbjct: 568 HAVTVPFAPGRADA 581
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 38/196 (19%)
Query: 81 EVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK--ISPKE--GRLPDAKRGA 136
E + + ++ +D+ LA +V V+GGP GR+DS+ S ++ LP
Sbjct: 96 ERECRGAVVSCSDILALAARDSVVVSGGPDYRVPLGRRDSRSFASTQDVLSDLPGPSSNV 155
Query: 137 PHLRDIFYRMGLSDKDIVALSGGHTLGRAH---------PERSGFDGPW----------- 176
L + R+GL D+V +SGGHT+G AH P P
Sbjct: 156 QSLLALLGRLGLDATDLVTISGGHTIGLAHCSSFEDRLFPRPDPTISPTFLSRLKRTCPA 215
Query: 177 ----------TREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDED 226
R P FDN Y+++L+N EGL +D+ L + R VE +A+ +
Sbjct: 216 KGTDRRTVLDVRTPNVFDNKYYIDLVN--REGLFV--SDQDLFTNAITRPIVERFAQSQQ 271
Query: 227 AFFRDYAASHKKLSEL 242
FF + S K+ ++
Sbjct: 272 DFFEQFGVSIGKMGQM 287
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNG-SIRNEEEYSHGSNN--GLKIALDFCEEVKAKHP-KI 89
++RL +HD + N +I +E++ N+ GL + D V+ P +
Sbjct: 36 LMRLHFHDCFVQGCDGSVLLNNTDTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTV 95
Query: 90 TYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPK---EGRLPDAKRGAPHLRDIFYRM 146
+ AD+ +A +A + GGP GR+DS + + LP L+ F
Sbjct: 96 SCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQ 155
Query: 147 GLSDKDIVALSGGHTLGRA 165
GL+ D+V LSGGHT GRA
Sbjct: 156 GLNTLDLVTLSGGHTFGRA 174
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 123/346 (35%), Gaps = 131/346 (37%)
Query: 18 RRDLRALIA---------YKNCAPIMLRLAWHDAGTY-DVNTKTGGPNGSIRNEEEYSHG 67
++D+ AL+ + N + +R+A H AGTY ++ + GG G R S
Sbjct: 88 KKDIAALMTESQDWWPADFGNYGGLFVRMAXHSAGTYRAMDGRGGGGMGQQRFAPLNSWP 147
Query: 68 SNNGLKIALDFCEEVKAKH-PKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS------ 120
N L A +K K+ KI++ADL L G VA+E G T+ F GR D+
Sbjct: 148 DNQNLDKARRLIWPIKQKYGNKISWADLMLLTGNVALENMGFKTLGFGGGRADTWQSDEA 207
Query: 121 ----------------------KISPKEGRL----------------------PDAKRGA 136
I+ + +L PD A
Sbjct: 208 VYWGAETTFVPQGNDVRYNNSVDINARADKLEKPLAATHMGLIYVNPEGPNGTPDPAASA 267
Query: 137 PHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH-----------PE---------------- 168
+R+ F RMG++D + VAL +GGH G+ H PE
Sbjct: 268 KDIREAFGRMGMNDTETVALIAGGHAFGKTHGAVKGSNIGPAPEAADLGMQGLGWHNSVG 327
Query: 169 --------RSGFDGPWTREPLKFDNSYFVELLNGE---------------SEGLLQLP-- 203
SG + WT+ P K+ N Y L+N G + P
Sbjct: 328 DGNGPNQMTSGLEVIWTKTPTKWSNGYLESLINNNWTLVESPAGAHQWEAVNGTVDYPDP 387
Query: 204 -------------TDKALLEDPEF----RRYVELYAKDEDAFFRDY 232
+D AL+ DPE+ +R++E + DAF + +
Sbjct: 388 FDKTKFRKATMLTSDLALINDPEYLKISQRWLEHPEELADAFAKAW 433
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 100/255 (39%), Gaps = 55/255 (21%)
Query: 42 AGTYDVNTKTGGPNGS-IRNEEEYSHGSNN--GLKIALDFCEEVKAK------HPKITYA 92
A TY + K GG NG+ I E + + SNN L LD ++V++ + K++ A
Sbjct: 502 ATTYRNSDKRGGCNGARIALEPQRNWVSNNPTQLSAVLDALKKVQSDFNGSNGNKKVSLA 561
Query: 93 DLYQLAGVVAVEVTGGPT-----VDFVPGRKD-----------SKISPKEGRLPDAKRGA 136
DL L G AVE V F GR D S + P+ + RG
Sbjct: 562 DLIVLGGTAAVEKAAKDAGVDIKVPFSAGRVDATQEQTDVTQFSYLEPQADGFRNYGRGT 621
Query: 137 PHLR------DIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVE 190
R D ++ L+ ++ L GG A+ + S G +T K +FV
Sbjct: 622 ARARTEEIMVDKASQLTLTPPELTVLVGGMRALGANYDGSDV-GVFTANKGKLTPDFFVN 680
Query: 191 LLN-------GESEGLLQLPTDK--------------ALLEDPEFRRYVELYAK--DEDA 227
L++ ++G + TD+ E R E+YA+ +++
Sbjct: 681 LVDMNIAWTASGADGESWVGTDRKSRSEKYKGSRADLVFGSHAELRAIAEVYAENGNQEK 740
Query: 228 FFRDYAASHKKLSEL 242
F +D+ A+ K+ L
Sbjct: 741 FVKDFVAAWTKVMNL 755
>pdb|1SJ2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
pdb|1SJ2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
Length = 743
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 106/277 (38%), Gaps = 87/277 (31%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSI-RNEE 62
++D RD+ ++ Y + P+ +R+AWH AGTY ++ GG G + R
Sbjct: 75 DVDALTRDIEEVMTTSQPWWPADYGHYGPLFIRMAWHAAGTYRIHDGRGGAGGGMQRFAP 134
Query: 63 EYSHGSNNGLKIALDFCEEVKAKH-PKITYADLYQLAGVVAV------------------ 103
S N L A VK K+ K+++ADL AG A+
Sbjct: 135 LNSWPDNASLDKARRLLWPVKKKYGKKLSWADLIVFAGNCALESMGFKTFGFGFGRVDQW 194
Query: 104 ---EVTGGPTVDFV-----PGRKDSK------------ISPK-EGRLPDAKRGAPHLRDI 142
EV G ++ G++D + ++P+ PD A +R+
Sbjct: 195 EPDEVYWGKEATWLGDERYSGKRDLENPLAAVQMGLIYVNPEGPNGNPDPMAAAVDIRET 254
Query: 143 FYRMGLSDKDIVAL-SGGHTLGRAH---------PE------------------------ 168
F RM ++D + AL GGHT G+ H PE
Sbjct: 255 FRRMAMNDVETAALIVGGHTFGKTHGAGPADLVGPEPEAAPLEQMGLGWKSSYGTGTGKD 314
Query: 169 --RSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLP 203
SG + WT P K+DNS F+E+L G L + P
Sbjct: 315 AITSGIEVVWTNTPTKWDNS-FLEILYGYEWELTKSP 350
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 103/267 (38%), Gaps = 62/267 (23%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNN---GLKIALDFCEEVKAK---- 85
++ AW A ++ + K GG NG IR + + N+ L+ + EE++
Sbjct: 475 LVSTAWAAASSFRGSDKRGGANGGRIRLQPQVGWEVNDPDGDLRKVIRTLEEIQESFNSA 534
Query: 86 ---HPKITYADLYQLAGVVAVEVTGGP-----TVDFVPGRKDSK-----------ISPK- 125
+ K+++ADL L G A+E TV F PGR D+ + PK
Sbjct: 535 APGNIKVSFADLVVLGGCAAIEKAAKAAGHNITVPFTPGRTDASQEQTDVESFAVLEPKA 594
Query: 126 EGRLPDAKRGAP-----HLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREP 180
+G +G P L D + LS ++ L GG + A+ +R G +T
Sbjct: 595 DGFRNYLGKGNPLPAEYMLLDKANLLTLSAPEMTVLVGGLRVLGANYKRLPL-GVFTEAS 653
Query: 181 LKFDNSYFVELLNGESEGLLQLPT-----------------------DKALLEDPEFRRY 217
N +FV LL+ G+ P+ D + E R
Sbjct: 654 ESLTNDFFVNLLD---MGITWEPSPADDGTYQGKDGSGKVKWTGSRVDLVFGSNSELRAL 710
Query: 218 VELYAKD--EDAFFRDYAASHKKLSEL 242
VE+Y D + F +D+ A+ K+ L
Sbjct: 711 VEVYGADDAQPKFVQDFVAAWDKVMNL 737
>pdb|2CCA|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCA|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 106/277 (38%), Gaps = 87/277 (31%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSI-RNEE 62
++D RD+ ++ Y + P+ +R+AWH AGTY ++ GG G + R
Sbjct: 72 DVDALTRDIEEVMTTSQPWWPADYGHYGPLFIRMAWHAAGTYRIHDGRGGAGGGMQRFAP 131
Query: 63 EYSHGSNNGLKIALDFCEEVKAKH-PKITYADLYQLAGVVAV------------------ 103
S N L A VK K+ K+++ADL AG A+
Sbjct: 132 LNSWPDNASLDKARRLLWPVKKKYGKKLSWADLIVFAGNCALESMGFKTFGFGFGRVDQW 191
Query: 104 ---EVTGGPTVDFV-----PGRKDSK------------ISPK-EGRLPDAKRGAPHLRDI 142
EV G ++ G++D + ++P+ PD A +R+
Sbjct: 192 EPDEVYWGKEATWLGDERYSGKRDLENPLAAVQMGLIYVNPEGPNGNPDPMAAAVDIRET 251
Query: 143 FYRMGLSDKDIVAL-SGGHTLGRAH---------PE------------------------ 168
F RM ++D + AL GGHT G+ H PE
Sbjct: 252 FRRMAMNDVETAALIVGGHTFGKTHGAGPADLVGPEPEAAPLEQMGLGWKSSYGTGTGKD 311
Query: 169 --RSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLP 203
SG + WT P K+DNS F+E+L G L + P
Sbjct: 312 AITSGIEVVWTNTPTKWDNS-FLEILYGYEWELTKSP 347
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 103/267 (38%), Gaps = 62/267 (23%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNN---GLKIALDFCEEVKAK---- 85
++ AW A ++ + K GG NG IR + + N+ L+ + EE++
Sbjct: 472 LVSTAWAAASSFRGSDKRGGANGGRIRLQPQVGWEVNDPDGDLRKVIRTLEEIQESFNSA 531
Query: 86 ---HPKITYADLYQLAGVVAVEVTGGP-----TVDFVPGRKDSK-----------ISPK- 125
+ K+++ADL L G A+E TV F PGR D+ + PK
Sbjct: 532 APGNIKVSFADLVVLGGCAAIEKAAKAAGHNITVPFTPGRTDASQEQTDVESFAVLEPKA 591
Query: 126 EGRLPDAKRGAP-----HLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREP 180
+G +G P L D + LS ++ L GG + A+ +R G +T
Sbjct: 592 DGFRNYLGKGNPLPAEYMLLDKANLLTLSAPEMTVLVGGLRVLGANYKRLPL-GVFTEAS 650
Query: 181 LKFDNSYFVELLNGESEGLLQLPT-----------------------DKALLEDPEFRRY 217
N +FV LL+ G+ P+ D + E R
Sbjct: 651 ESLTNDFFVNLLD---MGITWEPSPADDGTYQGKDGSGKVKWTGSRVDLVFGSNSELRAL 707
Query: 218 VELYAKD--EDAFFRDYAASHKKLSEL 242
VE+Y D + F +D+ A+ K+ L
Sbjct: 708 VEVYGADDAQPKFVQDFVAAWDKVMNL 734
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 77/200 (38%), Gaps = 19/200 (9%)
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVE-VTGGPTVDFVPGRKDSK 121
E + +N GL ++ V H +++ DL Q A V + G P ++F+ GR +S
Sbjct: 86 ELAFPANGGLTDTVEALRAVGINH-GVSFGDLIQFAAAVGMSNCPGSPRLEFLTGRSNSS 144
Query: 122 ISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSG-FDGPWTREP 180
+P + D F G S ++V L H+L S F P P
Sbjct: 145 QPSPPSLIPGPGNTVTAILDRFGDAGFSPDEVVDLLAAHSLASQEGLNSAIFRSPLDSTP 204
Query: 181 LKFDNSYFVE-LLNGESE---------------GLLQLPTDKALLEDPEFRRYVELYAKD 224
FD +++E LL G ++ G ++ +D L D +
Sbjct: 205 QVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGGFRIRSDALLARDSRTACRWQSMTSS 264
Query: 225 EDAFFRDYAASHKKLSELGF 244
+ + + A+ K+S LGF
Sbjct: 265 NEVMGQRFRAAMAKMSVLGF 284
>pdb|2CCD|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCD|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 106/277 (38%), Gaps = 87/277 (31%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSI-RNEE 62
++D RD+ ++ Y + P+ +R+AWH AGTY ++ GG G + R
Sbjct: 72 DVDALTRDIEEVMTTSQPWWPADYGHYGPLFIRMAWHAAGTYRIHDGRGGAGGGMQRFAP 131
Query: 63 EYSHGSNNGLKIALDFCEEVKAKH-PKITYADLYQLAGVVAV------------------ 103
S N L A VK K+ K+++ADL AG A+
Sbjct: 132 LNSWPDNASLDKARRLLWPVKKKYGKKLSWADLIVFAGNCALESMGFKTFGFGFGRVDQW 191
Query: 104 ---EVTGGPTVDFV-----PGRKDSK------------ISPK-EGRLPDAKRGAPHLRDI 142
EV G ++ G++D + ++P+ PD A +R+
Sbjct: 192 EPDEVYWGKEATWLGDERYSGKRDLENPLAAVQMGLIYVNPEGPNGNPDPMAAAVDIRET 251
Query: 143 FYRMGLSDKDIVAL-SGGHTLGRAH---------PE------------------------ 168
F RM ++D + AL GGHT G+ H PE
Sbjct: 252 FRRMAMNDVETAALIVGGHTFGKTHGAGPADLVGPEPEAAPLEQMGLGWKSSYGTGTGKD 311
Query: 169 --RSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLP 203
+G + WT P K+DNS F+E+L G L + P
Sbjct: 312 AITTGIEVVWTNTPTKWDNS-FLEILYGYEWELTKSP 347
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 103/267 (38%), Gaps = 62/267 (23%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNN---GLKIALDFCEEVKAK---- 85
++ AW A ++ + K GG NG IR + + N+ L+ + EE++
Sbjct: 472 LVSTAWAAASSFRGSDKRGGANGGRIRLQPQVGWEVNDPDGDLRKVIRTLEEIQESFNSA 531
Query: 86 ---HPKITYADLYQLAGVVAVEVTGGP-----TVDFVPGRKDSK-----------ISPK- 125
+ K+++ADL L G A+E TV F PGR D+ + PK
Sbjct: 532 APGNIKVSFADLVVLGGCAAIEKAAKAAGHNITVPFTPGRTDASQEQTDVESFAVLEPKA 591
Query: 126 EGRLPDAKRGAP-----HLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREP 180
+G +G P L D + LS ++ L GG + A+ +R G +T
Sbjct: 592 DGFRNYLGKGNPLPAEYMLLDKANLLTLSAPEMTVLVGGLRVLGANYKRLPL-GVFTEAS 650
Query: 181 LKFDNSYFVELLNGESEGLLQLPT-----------------------DKALLEDPEFRRY 217
N +FV LL+ G+ P+ D + E R
Sbjct: 651 ESLTNDFFVNLLD---MGITWEPSPADDGTYQGKDGSGKVKWTGSRVDLVFGSNSELRAL 707
Query: 218 VELYAKD--EDAFFRDYAASHKKLSEL 242
VE+Y D + F +D+ A+ K+ L
Sbjct: 708 VEVYGADDAQPKFVQDFVAAWDKVMNL 734
>pdb|1CK6|A Chain A, Binding Mode Of Salicylhydroxamic Acid To Arthromyces
Ramosus Peroxidase
pdb|1C8I|A Chain A, Binding Mode Of Hydroxylamine To Arthromyces Ramosus
Peroxidase
pdb|1ARP|A Chain A, Crystal Structure Of The Fungal Peroxidase From
Arthromyces Ramosus At 1.9 Angstroms Resolution:
Structural Comparisons With The Lignin And Cytochrome C
Peroxidases
pdb|1ARU|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARV|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARW|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARX|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARY|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1GZA|A Chain A, Peroxidase
pdb|1GZB|A Chain A, Peroxidase
pdb|1HSR|A Chain A, Binding Mode Of Benzhydroxamic Acid To Arthromyces Ramosus
Peroxidase
pdb|2E3B|A Chain A, Crystal Structure Of The Ha-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E3A|A Chain A, Crystal Structure Of The No-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E39|A Chain A, Crystal Structure Of The Cn-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
Length = 344
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 19/200 (9%)
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVE-VTGGPTVDFVPGRKDSK 121
E + +N GL ++ V H +++ DL Q A V + G P ++F+ GR +S
Sbjct: 87 ELAFPANGGLTDTIEALRAVGINH-GVSFGDLIQFATAVGMSNCPGSPRLEFLTGRSNSS 145
Query: 122 ISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSG-FDGPWTREP 180
+P + D G S ++V L H+L S F P P
Sbjct: 146 QPSPPSLIPGPGNTVTAILDRMGDAGFSPDEVVDLLAAHSLASQEGLNSAIFRSPLDSTP 205
Query: 181 LKFDNSYFVE-LLNGESE---------------GLLQLPTDKALLEDPEFRRYVELYAKD 224
FD +++E LL G ++ G ++ +D L D +
Sbjct: 206 QVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGEFRMRSDALLARDSRTACRWQSMTSS 265
Query: 225 EDAFFRDYAASHKKLSELGF 244
+ + Y A+ K+S LGF
Sbjct: 266 NEVMGQRYRAAMAKMSVLGF 285
>pdb|1LY9|A Chain A, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LY9|B Chain B, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 80/214 (37%), Gaps = 24/214 (11%)
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVE-VTGGPTVDFVPGRKDSK 121
E + +N GL ++ V H +++ DL Q A V + G P ++F+ GR S
Sbjct: 86 ELAFPANGGLTDTVEALRAVGINH-GVSFGDLIQFATAVGMSNCPGSPRLEFLTGRSSSS 144
Query: 122 ISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSG-FDGPWTREP 180
+P + D G S ++V L H+L S F P P
Sbjct: 145 QPSPPSLIPGPGNTVTAILDRMGDAGFSPDEVVDLLAAHSLASQEGLNSAIFRSPLDSTP 204
Query: 181 LKFDNSYFVE-LLNGESE---------------GLLQLPTDKALLEDPEFRRYVELYAKD 224
FD +++E LL G ++ G ++ +D L D +
Sbjct: 205 QVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGEFRMRSDALLARDSRTACRWQSMTSS 264
Query: 225 EDAFFRDYAASHKKLSELGFSPGSGSKSTANDCT 258
+ + Y A+ K+S LGF ++ DC+
Sbjct: 265 NEVMGQRYRAAMAKMSVLGF-----DRNALTDCS 293
>pdb|1LYK|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYK|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 81/214 (37%), Gaps = 24/214 (11%)
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVE-VTGGPTVDFVPGRKDSK 121
E + +N GL ++ V H +++ DL Q A V + G P ++F+ GR +S
Sbjct: 86 ELAFPANGGLTDTVEALRAVGINH-GVSFGDLIQFATAVGMSNCPGSPRLEFLTGRSNSS 144
Query: 122 ISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSG-FDGPWTREP 180
+P + D G S ++V L H+L S F P P
Sbjct: 145 QPSPPSLIPGPGNTVTAILDRMGDAGFSPDEVVDLLAAHSLASQEGLNSAIFRSPLDSTP 204
Query: 181 LKFDNSYFVE-LLNGESE---------------GLLQLPTDKALLEDPEFRRYVELYAKD 224
FD +++E LL G ++ G ++ +D L D +
Sbjct: 205 QVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGEFRMRSDALLARDSRTACRWQSMTSS 264
Query: 225 EDAFFRDYAASHKKLSELGFSPGSGSKSTANDCT 258
+ + Y A+ K+S LGF ++ DC+
Sbjct: 265 NEVMGQRYRAAMAKMSVLGF-----DRNALTDCS 293
>pdb|1U2J|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|C Chain C, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|D Chain D, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|E Chain E, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|F Chain F, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|G Chain G, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|H Chain H, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
Length = 326
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 100/256 (39%), Gaps = 49/256 (19%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
++ +AW A T+ K GG NG+ + + N AL E+++ + K + A
Sbjct: 67 LVSVAWASASTFRGGDKRGGANGARLALMPQRDWDVNAAAVRALPVLEKIQKESGKASLA 126
Query: 93 DLYQLAGVVAVEVTGGPT-----VDFVPGRKDSKISPKE------------------GRL 129
D+ LAGVV VE V F PGR D++ + RL
Sbjct: 127 DIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDIEMFELLEPIADGFRNYRARL 186
Query: 130 PDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
D L D ++ L+ ++ AL GG + A+ + S +G +T N +FV
Sbjct: 187 -DVSTTESLLIDKAQQLTLTAPEMTALVGGMRVLGANFDGSK-NGVFTDRVGVLSNDFFV 244
Query: 190 ELLNGESE------------------GLLQLPTDKALL---EDPEFRRYVELYAKDE--D 226
LL+ E G ++ +A L + R E+YA + +
Sbjct: 245 NLLDMRYEWKATDESKELFEGRDRETGEVKFTASRADLVFGSNSVLRAVAEVYASSDAHE 304
Query: 227 AFFRDYAASHKKLSEL 242
F +D+ A+ K+ L
Sbjct: 305 KFVKDFVAAWVKVMNL 320
>pdb|1U2K|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase- Peroxidase Katg Of Escherichia Coli (I41)
pdb|1U2L|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
pdb|1U2L|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
Length = 309
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 100/256 (39%), Gaps = 49/256 (19%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
++ +AW A T+ K GG NG+ + + N AL E+++ + K + A
Sbjct: 50 LVSVAWASASTFRGGDKRGGANGARLALMPQRDWDVNAAAVRALPVLEKIQKESGKASLA 109
Query: 93 DLYQLAGVVAVEVTGGPT-----VDFVPGRKDSKISPKE------------------GRL 129
D+ LAGVV VE V F PGR D++ + RL
Sbjct: 110 DIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDIEMFELLEPIADGFRNYRARL 169
Query: 130 PDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
D L D ++ L+ ++ AL GG + A+ + S +G +T N +FV
Sbjct: 170 -DVSTTESLLIDKAQQLTLTAPEMTALVGGMRVLGANFDGSK-NGVFTDRVGVLSNDFFV 227
Query: 190 ELLNGESE------------------GLLQLPTDKALL---EDPEFRRYVELYAKDE--D 226
LL+ E G ++ +A L + R E+YA + +
Sbjct: 228 NLLDMRYEWKATDESKELFEGRDRETGEVKFTASRADLVFGSNSVLRAVAEVYASSDAHE 287
Query: 227 AFFRDYAASHKKLSEL 242
F +D+ A+ K+ L
Sbjct: 288 KFVKDFVAAWVKVMNL 303
>pdb|1H3J|A Chain A, Structure Of Recombinant Coprinus Cinereus Peroxidase
Determined To 2.0 A
pdb|1H3J|B Chain B, Structure Of Recombinant Coprinus Cinereus Peroxidase
Determined To 2.0 A
Length = 342
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 75/200 (37%), Gaps = 19/200 (9%)
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVE-VTGGPTVDFVPGRKDSK 121
E + +N GL ++ V H +++ DL Q A V + G P ++F+ GR +S
Sbjct: 85 ELAFPANGGLTDTVEALRAVGINH-GVSFGDLIQFATAVGMSNCPGSPRLEFLTGRSNSS 143
Query: 122 ISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSG-FDGPWTREP 180
+P + D G S ++V L +L S F P P
Sbjct: 144 QPSPPSLIPGPGNTVTAILDRMGDAGFSPDEVVDLLAAXSLASQEGLNSAIFRSPLDSTP 203
Query: 181 LKFDNSYFVE-LLNGESE---------------GLLQLPTDKALLEDPEFRRYVELYAKD 224
FD +++E LL G ++ G ++ +D L D +
Sbjct: 204 QVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGEFRMRSDALLARDSRTACRWQSMTSS 263
Query: 225 EDAFFRDYAASHKKLSELGF 244
+ + Y A+ K+S LGF
Sbjct: 264 NEVMGQRYRAAMAKMSVLGF 283
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/275 (20%), Positives = 102/275 (37%), Gaps = 50/275 (18%)
Query: 31 APIMLRLAWHDAGTYDVNTKT---GGPNGSIRNEEEYSHGSNNGLKIALDFCEEVKAKHP 87
AP ++R+ +HD + N + + ++ S G ++ V+A P
Sbjct: 33 APGLIRMHFHDCFVRGCDASVLLDSTANNTAEKDAIPNNPSLRGFEVITAAKSAVEAACP 92
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS---PKEGRLPDAKRGAPHLRDIF 143
+ ++ AD+ A + + G T GR+D +S ++P A L + F
Sbjct: 93 QTVSCADILAFAARDSANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSF 152
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPER-----------SGFD------------------- 173
L+ ++V LSG H++G AH SG D
Sbjct: 153 ANKTLTADEMVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANS 212
Query: 174 ---GPWTRE-----PLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDE 225
P T P DN Y+ G L L +D+AL+ + V+ A +
Sbjct: 213 TRFTPITVSLDIITPSVLDNMYYT----GVQLTLGLLTSDQALVTEANLSAAVKANAMNL 268
Query: 226 DAFFRDYAASHKKLSELGFSPGSGSKSTANDCTIL 260
A+ +A + K+ ++ G+ + N C+++
Sbjct: 269 TAWASKFAQAMVKMGQIEVLTGTQGEIRTN-CSVV 302
>pdb|1LGA|A Chain A, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LGA|B Chain B, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LLP|A Chain A, Lignin Peroxidase (isozyme H2) Pi 4.15
Length = 343
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 81/212 (38%), Gaps = 24/212 (11%)
Query: 58 IRNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVE-VTGGPTVDFVPG 116
I + E + N GL + + KH +T D AG VA+ G P ++F G
Sbjct: 73 IFDTIETAFHPNIGLDEVVAMQKPFVQKH-GVTPGDFIAFAGAVALSNCPGAPQMNFFTG 131
Query: 117 RKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSDK-DIVALSGGHTLGRAH---PERSGF 172
RK + +G +P+ + G D+ ++V + H++ + P G
Sbjct: 132 RKPATQPAPDGLVPEPFHTVDQIIARVNDAGEFDELELVWMLSAHSVAAVNDVDPTVQGL 191
Query: 173 DGPWTREPLKFDNSYFVELL------------NGESE----GLLQLPTDKALLEDPEFRR 216
P+ P FD+ +FVE GE E G +++ TD L D
Sbjct: 192 --PFDSTPGIFDSQFFVETQFRGTLFPGSGGNQGEVESGMAGEIRIQTDHTLARDSRTAC 249
Query: 217 YVELYAKDEDAFFRDYAASHKKLSELGFSPGS 248
+ + ++ D+ L++LG P +
Sbjct: 250 EWQSFVGNQSKLVDDFQFIFLALTQLGQDPNA 281
>pdb|1P33|A Chain A, Pteridine Reductase From Leishmania Tarentolae Complex
With Nadph And Mtx
pdb|1P33|B Chain B, Pteridine Reductase From Leishmania Tarentolae Complex
With Nadph And Mtx
pdb|1P33|C Chain C, Pteridine Reductase From Leishmania Tarentolae Complex
With Nadph And Mtx
pdb|1P33|D Chain D, Pteridine Reductase From Leishmania Tarentolae Complex
With Nadph And Mtx
Length = 289
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 192 LNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDA 227
+NG S GL LP D ++RR V LY ++ A
Sbjct: 220 VNGVSPGLSVLPDDMPFSVQEDYRRKVPLYQRNSSA 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,094,732
Number of Sequences: 62578
Number of extensions: 412457
Number of successful extensions: 1256
Number of sequences better than 100.0: 145
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 824
Number of HSP's gapped (non-prelim): 209
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)