Query 023103
Match_columns 287
No_of_seqs 147 out of 1176
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:27:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02608 L-ascorbate peroxidas 100.0 3.1E-92 6.8E-97 654.2 28.0 287 1-287 1-289 (289)
2 PLN02879 L-ascorbate peroxidas 100.0 8.4E-75 1.8E-79 529.3 24.4 245 2-246 5-249 (251)
3 PLN02364 L-ascorbate peroxidas 100.0 8E-74 1.7E-78 523.3 25.3 245 2-246 4-249 (250)
4 cd00691 ascorbate_peroxidase A 100.0 1.4E-71 3.1E-76 509.8 22.9 242 4-245 2-251 (253)
5 PLN03030 cationic peroxidase; 100.0 7.8E-67 1.7E-71 490.7 16.1 231 8-250 27-314 (324)
6 cd00693 secretory_peroxidase H 100.0 2.9E-65 6.3E-70 477.9 16.9 221 18-250 19-289 (298)
7 cd00692 ligninase Ligninase an 100.0 3.6E-62 7.9E-67 460.5 21.7 231 16-247 19-278 (328)
8 cd00649 catalase_peroxidase_1 100.0 8.9E-59 1.9E-63 444.6 18.4 244 7-250 32-401 (409)
9 cd00314 plant_peroxidase_like 100.0 5.3E-58 1.1E-62 419.8 20.1 226 16-241 2-255 (255)
10 PF00141 peroxidase: Peroxidas 100.0 4.4E-58 9.5E-63 415.7 6.1 197 17-224 1-230 (230)
11 TIGR00198 cat_per_HPI catalase 100.0 2.1E-55 4.5E-60 444.8 18.8 235 7-241 42-397 (716)
12 PRK15061 catalase/hydroperoxid 100.0 2.8E-53 6.1E-58 427.5 18.3 235 7-241 44-403 (726)
13 cd08201 plant_peroxidase_like_ 100.0 1.3E-52 2.8E-57 383.7 14.6 209 26-241 37-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 1.8E-48 4E-53 360.4 20.4 237 3-243 3-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 8.2E-43 1.8E-47 353.3 21.0 237 3-244 422-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 3.3E-42 7.1E-47 347.4 20.6 238 3-244 428-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 1E-38 2.2E-43 310.2 16.2 242 5-246 55-419 (730)
18 COG0376 KatG Catalase (peroxid 99.8 7.6E-20 1.6E-24 179.0 16.6 236 3-243 439-725 (730)
19 PF11027 DUF2615: Protein of u 81.2 1.1 2.4E-05 36.2 2.1 29 232-262 14-43 (103)
20 PF01102 Glycophorin_A: Glycop 72.0 5 0.00011 33.4 3.6 34 254-287 60-93 (122)
21 PF11895 DUF3415: Domain of un 69.3 3.7 8.1E-05 31.7 2.1 20 227-246 2-21 (80)
22 PF01034 Syndecan: Syndecan do 57.9 3.1 6.7E-05 30.8 -0.2 27 258-285 13-39 (64)
23 COG1563 Predicted subunit of t 39.2 28 0.0006 27.3 2.5 24 259-286 59-82 (87)
24 PTZ00382 Variant-specific surf 36.5 9 0.0002 30.3 -0.6 28 258-285 66-95 (96)
25 PRK12346 transaldolase A; Prov 35.2 22 0.00048 34.2 1.7 85 75-161 138-240 (316)
26 PTZ00411 transaldolase-like pr 32.1 28 0.0006 33.7 1.8 87 74-162 148-252 (333)
27 PF09533 DUF2380: Predicted li 32.0 60 0.0013 28.9 3.7 26 136-161 107-132 (188)
28 PF15656 Tox-HDC: Toxin with a 29.1 59 0.0013 26.9 3.0 48 145-194 22-71 (119)
29 PF14800 DUF4481: Domain of un 28.9 1.1E+02 0.0024 29.3 5.1 99 179-284 17-121 (308)
30 PRK06287 cobalt transport prot 26.8 78 0.0017 25.5 3.3 28 256-285 77-104 (107)
31 PRK05264 transcriptional repre 24.5 80 0.0017 25.1 2.8 31 207-237 35-67 (105)
32 PF01299 Lamp: Lysosome-associ 24.2 62 0.0013 30.5 2.6 32 251-282 258-294 (306)
33 cd00490 Met_repressor_MetJ Met 23.7 86 0.0019 24.8 2.8 31 207-237 34-66 (103)
34 PF15102 TMEM154: TMEM154 prot 23.2 30 0.00066 29.6 0.3 26 261-287 63-88 (146)
35 PRK13859 type IV secretion sys 22.7 54 0.0012 23.3 1.4 31 94-124 9-42 (55)
36 COG2147 RPL19A Ribosomal prote 22.2 99 0.0022 26.6 3.2 23 6-28 24-48 (150)
37 PLN02438 inositol-3-phosphate 22.0 4E+02 0.0087 27.5 7.9 115 11-156 203-335 (510)
38 PF12732 YtxH: YtxH-like prote 21.9 88 0.0019 23.1 2.5 16 261-276 3-18 (74)
39 PF08113 CoxIIa: Cytochrome c 20.2 1.7E+02 0.0038 18.9 3.2 20 262-281 6-25 (34)
No 1
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=3.1e-92 Score=654.18 Aligned_cols=287 Identities=87% Similarity=1.360 Sum_probs=278.7
Q ss_pred CCCCccChhHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCcCChhhhccCCCCchhHHHHHHH
Q 023103 1 MALPVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCE 80 (287)
Q Consensus 1 ~~~~~~~~~y~~~~~~~~~~l~~~~~~~~~aa~llRl~FHDc~~~d~s~~~gG~dgSil~~~E~~~~~N~gl~~~~~~i~ 80 (287)
|+-|++++||+++++.+|+||+++.++|.++|.||||+||||+|||.++++|||||||++++|+++++|.||++++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid 80 (289)
T PLN02608 1 MAAPVVDAEYLKEIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCE 80 (289)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHhhCCCCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHcCCCcccceeccccc
Q 023103 81 EVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGH 160 (287)
Q Consensus 81 ~ik~~~p~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gft~~E~VaL~GaH 160 (287)
++|+++|+|||||||+|||++||+.+|||.|+|++||+|+++++++++||+|+.+++++++.|+++||+++|||+|+|||
T Consensus 81 ~iK~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAH 160 (289)
T PLN02608 81 PVKAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGH 160 (289)
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCCccChHHHHHHhhcccCCcccccchhhccCChhHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 023103 161 TLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLS 240 (287)
Q Consensus 161 TiG~~h~~~~g~~g~~~~tP~~fDN~Yy~~ll~~~~~gll~l~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~ 240 (287)
|||++||.++++.|+|+.||.+|||+||++|++++++|+++|+||++|+.|++|+++|+.||.||+.|+++|++||+||+
T Consensus 161 TiG~ahc~r~g~~g~~~~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~ 240 (289)
T PLN02608 161 TLGRAHPERSGFDGPWTKEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLS 240 (289)
T ss_pred ccccccccCCCCCCCCCCCCCccChHHHHHHHcCCcCCccccccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 99999999888888999999999999999999996569988999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCC--cccCCcchhhhhhhHHHHHHHHHHHHHHHHHHhhccC
Q 023103 241 ELGFSPGSGS--KSTANDCTILAQGAVGVAVTVAVVILSYFYEVRKRMK 287 (287)
Q Consensus 241 ~lgv~tg~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (287)
++||+||++| +-.....+.|||.+||++|..+||||||||||||+||
T Consensus 241 ~lgvltg~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (289)
T PLN02608 241 ELGFTPPSSAFKKKSTSTSTVLAQSAVGVAVAAAVVILSYFYEVRKKMK 289 (289)
T ss_pred cCCCCCCCCCcccccCcchhhhhhcccchhhhHHHHHHHHHhhhhhccC
Confidence 9999999999 6666678999999999999999999999999999998
No 2
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=8.4e-75 Score=529.32 Aligned_cols=245 Identities=64% Similarity=1.087 Sum_probs=238.5
Q ss_pred CCCccChhHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCcCChhhhccCCCCchhHHHHHHHH
Q 023103 2 ALPVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEE 81 (287)
Q Consensus 2 ~~~~~~~~y~~~~~~~~~~l~~~~~~~~~aa~llRl~FHDc~~~d~s~~~gG~dgSil~~~E~~~~~N~gl~~~~~~i~~ 81 (287)
+.|++..+|.++++.++++|++++.++.++|.+|||+||||+|||..++.|||||||++.+|+++++|.||+.++++|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~~i~~ 84 (251)
T PLN02879 5 SYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRLLDP 84 (251)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHhhCCCCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHcCCCcccceecccccc
Q 023103 82 VKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHT 161 (287)
Q Consensus 82 ik~~~p~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gft~~E~VaL~GaHT 161 (287)
||+++|+|||||||+||+++||+.+|||.|+|++||+|+..+.++++||.|+.+++++++.|+++||+++|||||+||||
T Consensus 85 iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHT 164 (251)
T PLN02879 85 IKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHT 164 (251)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCccChHHHHHHhhcccCCcccccchhhccCChhHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 023103 162 LGRAHPERSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSE 241 (287)
Q Consensus 162 iG~~h~~~~g~~g~~~~tP~~fDN~Yy~~ll~~~~~gll~l~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 241 (287)
||++||.|++++|+|+.||.+|||+||++|+.++++|+++|+||++|+.|++|+++|++||.||+.|+++|++||+||++
T Consensus 165 iG~ah~~r~g~~g~~d~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~ 244 (251)
T PLN02879 165 LGRCHKERSGFEGAWTPNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSE 244 (251)
T ss_pred ccccccccccCCCCCCCCccceeHHHHHHHHcCCcCCCccchhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999955599889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 023103 242 LGFSP 246 (287)
Q Consensus 242 lgv~t 246 (287)
+|+.+
T Consensus 245 lg~~~ 249 (251)
T PLN02879 245 LGFAD 249 (251)
T ss_pred cCCCC
Confidence 99864
No 3
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=8e-74 Score=523.34 Aligned_cols=245 Identities=63% Similarity=1.079 Sum_probs=236.7
Q ss_pred CCCccChhHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCcCChhhhccCCCCchhHHHHHHHH
Q 023103 2 ALPVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEE 81 (287)
Q Consensus 2 ~~~~~~~~y~~~~~~~~~~l~~~~~~~~~aa~llRl~FHDc~~~d~s~~~gG~dgSil~~~E~~~~~N~gl~~~~~~i~~ 81 (287)
+.|+++.+|.+.+++++++|++++.+++++|.||||+||||++||+....|||||||.+++|+++++|.||++++++|+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~i~~ 83 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRLLDP 83 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHhhCCCCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH-cCCCcccceeccccc
Q 023103 82 VKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGH 160 (287)
Q Consensus 82 ik~~~p~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~-~Gft~~E~VaL~GaH 160 (287)
||+++++|||||||+|||++||+++|||.|+|++||+|+++|.++++||.|+.+++++++.|++ +|||++|||+|+|||
T Consensus 84 ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaLsGaH 163 (250)
T PLN02364 84 IREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVFAKQMGLSDKDIVALSGAH 163 (250)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHHHHHHHHHHhcCCCHHHheeeecce
Confidence 9999999999999999999999999999999999999999999999999999999999999997 599999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCCccChHHHHHHhhcccCCcccccchhhccCChhHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 023103 161 TLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLS 240 (287)
Q Consensus 161 TiG~~h~~~~g~~g~~~~tP~~fDN~Yy~~ll~~~~~gll~l~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~ 240 (287)
|||++||.++++.|+|+.||.+|||+||++|++++++|+++|+||++|+.|++|+.+|+.||.|++.|+++|++||+||+
T Consensus 164 TiG~~hc~r~~~~g~~~~tp~~fDn~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~ 243 (250)
T PLN02364 164 TLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLS 243 (250)
T ss_pred eeccccCCCCCCCCCCCCCCCccchHHHHHHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 99999999999889999999999999999999995569988899999999999999999999999999999999999999
Q ss_pred hCCCCC
Q 023103 241 ELGFSP 246 (287)
Q Consensus 241 ~lgv~t 246 (287)
++|+.+
T Consensus 244 ~lg~~~ 249 (250)
T PLN02364 244 ELGFAD 249 (250)
T ss_pred ccCCCC
Confidence 999864
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.4e-71 Score=509.76 Aligned_cols=242 Identities=65% Similarity=1.113 Sum_probs=229.5
Q ss_pred CccChhHHHH-HHHHHHHHHHHHhCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCcCChhhhccCCCCchhHHHHHHHHH
Q 023103 4 PVVDTEYLKE-IDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEEV 82 (287)
Q Consensus 4 ~~~~~~y~~~-~~~~~~~l~~~~~~~~~aa~llRl~FHDc~~~d~s~~~gG~dgSil~~~E~~~~~N~gl~~~~~~i~~i 82 (287)
|+|+-.|... ++.++++|++.+++++++|.+|||+||||++||++.+.|||||++.+++|+++++|.+|++++++|++|
T Consensus 2 ~~~~~~~~~~~~~~V~~~v~~~~~~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~i 81 (253)
T cd00691 2 PVVSAAYAAKDLEAARNDIAKLIDDKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPI 81 (253)
T ss_pred CcccccccHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHH
Confidence 8999888765 788899999888899999999999999999999999999999999988999999999998899999999
Q ss_pred HhhCCCCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCC---CCCCCCCCCCChHHHHHHHHHcCCCcccceecccc
Q 023103 83 KAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISP---KEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGG 159 (287)
Q Consensus 83 k~~~p~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~---~~~~lP~p~~~~~~l~~~F~~~Gft~~E~VaL~Ga 159 (287)
|+++|+|||||||++||++||+.+|||.|+|++||+|+++|. ++++||.|+.+++++++.|+++||+++|||+|+||
T Consensus 82 K~~~~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGa 161 (253)
T cd00691 82 KKKYPDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGA 161 (253)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhccc
Confidence 999999999999999999999999999999999999999987 67889999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCCCCccChHHHHHHhhccc----CCcccccchhhccCChhHHHHHHHhhcCHHHHHHHHHHH
Q 023103 160 HTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGES----EGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAAS 235 (287)
Q Consensus 160 HTiG~~h~~~~g~~g~~~~tP~~fDN~Yy~~ll~~~~----~gll~l~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A 235 (287)
||||++||.++++.|+|..||.+|||+||++|+++++ +++++|+||++|+.|++|+++|++||.|+++|+++|++|
T Consensus 162 HTiG~a~c~~~~~~g~~~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~A 241 (253)
T cd00691 162 HTLGRCHKERSGYDGPWTKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEA 241 (253)
T ss_pred ceeecccccCCCCCCCCCCCCCcccHHHHHHHhcCCCccCcCcceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHH
Confidence 9999999988888888889999999999999999984 345558999999999999999999999999999999999
Q ss_pred HHHHHhCCCC
Q 023103 236 HKKLSELGFS 245 (287)
Q Consensus 236 m~Km~~lgv~ 245 (287)
|+||+++||.
T Consensus 242 m~Km~~l~v~ 251 (253)
T cd00691 242 HKKLSELGVP 251 (253)
T ss_pred HHHHHhcCCC
Confidence 9999999985
No 5
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=7.8e-67 Score=490.72 Aligned_cols=231 Identities=27% Similarity=0.405 Sum_probs=203.2
Q ss_pred hhHHHH-HHHHHHHH----H-HHHhCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCcCCh---hhhccCCCCchhHHHHH
Q 023103 8 TEYLKE-IDKARRDL----R-ALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNE---EEYSHGSNNGLKIALDF 78 (287)
Q Consensus 8 ~~y~~~-~~~~~~~l----~-~~~~~~~~aa~llRl~FHDc~~~d~s~~~gG~dgSil~~---~E~~~~~N~gl~~~~~~ 78 (287)
.+|+++ +..+...| + ++.+|++++|++|||+||||| ++||||||+++ .|+++++|.+| +++++
T Consensus 27 ~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCf-------v~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf~~ 98 (324)
T PLN03030 27 VGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCF-------VRGCDASILIDGSNTEKTALPNLLL-RGYDV 98 (324)
T ss_pred cchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhhe-------ecCCceEEeeCCCcccccCCCCcCc-chHHH
Confidence 455544 54444444 3 355799999999999999998 79999999984 69999999999 58999
Q ss_pred HHHHHhh----CC-CCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCC--CCCCCCCCCCChHHHHHHHHHcCCCcc
Q 023103 79 CEEVKAK----HP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISP--KEGRLPDAKRGAPHLRDIFYRMGLSDK 151 (287)
Q Consensus 79 i~~ik~~----~p-~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~--~~~~lP~p~~~~~~l~~~F~~~Gft~~ 151 (287)
|+.+|++ || +||||||||+|||+||.++|||.|+|++||+|+++|. ...+||.|+.+++++++.|+++||+.+
T Consensus 99 i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~ 178 (324)
T PLN03030 99 IDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKFAAKGLNTQ 178 (324)
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHHHHcCCCHH
Confidence 9999964 99 9999999999999999999999999999999998875 345899999999999999999999999
Q ss_pred cceecccccccccCCCCCC-----CCCC---------------------------C-----CCCCCCccChHHHHHHhhc
Q 023103 152 DIVALSGGHTLGRAHPERS-----GFDG---------------------------P-----WTREPLKFDNSYFVELLNG 194 (287)
Q Consensus 152 E~VaL~GaHTiG~~h~~~~-----g~~g---------------------------~-----~~~tP~~fDN~Yy~~ll~~ 194 (287)
|||+|+||||||++||... +|.+ + +..||.+|||+||+||+++
T Consensus 179 DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~ 258 (324)
T PLN03030 179 DLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLKNG 258 (324)
T ss_pred HheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHHhc
Confidence 9999999999999999521 1110 0 2368999999999999999
Q ss_pred ccCCcccccchhhccCChhHHHHHHHhhcCH----HHHHHHHHHHHHHHHhCCCCCCCCC
Q 023103 195 ESEGLLQLPTDKALLEDPEFRRYVELYAKDE----DAFFRDYAASHKKLSELGFSPGSGS 250 (287)
Q Consensus 195 ~~~gll~l~SD~~L~~d~~t~~~V~~yA~d~----~~F~~~Fa~Am~Km~~lgv~tg~~g 250 (287)
+ |+ |+|||+|+.|++|+++|++||.|+ +.|+++|++||+|||++||+||++|
T Consensus 259 r--Gl--L~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~G 314 (324)
T PLN03030 259 R--GI--LESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNG 314 (324)
T ss_pred C--CC--cCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCC
Confidence 8 88 799999999999999999999875 5999999999999999999999999
No 6
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.9e-65 Score=477.85 Aligned_cols=221 Identities=40% Similarity=0.630 Sum_probs=199.8
Q ss_pred HHHHHH-HHhCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCcCCh------hhhccCCCCchhHHHHHHHHHHhh----C
Q 023103 18 RRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNE------EEYSHGSNNGLKIALDFCEEVKAK----H 86 (287)
Q Consensus 18 ~~~l~~-~~~~~~~aa~llRl~FHDc~~~d~s~~~gG~dgSil~~------~E~~~~~N~gl~~~~~~i~~ik~~----~ 86 (287)
++.|++ +.++++++|++|||+||||+ ++||||||+++ +|+++++|.++ +++++|+.||++ |
T Consensus 19 ~~~v~~~~~~~~~~a~~~lRl~FHDc~-------v~GcDaSill~~~~~~~~E~~~~~N~~l-~g~~~i~~iK~~~e~~c 90 (298)
T cd00693 19 RSVVRAAVKADPRLAAALLRLHFHDCF-------VRGCDASVLLDSTANNTSEKDAPPNLSL-RGFDVIDDIKAALEAAC 90 (298)
T ss_pred HHHHHHHHHhCCCcCchhhhhhhHhhh-------ccCcceeEEecCCCCCchhccCCCCCCc-chhHHHHHHHHHHHhhC
Confidence 555544 55689999999999999998 69999999964 59999999999 599999999964 8
Q ss_pred C-CCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCCC--CCCCCCCCCChHHHHHHHHHcCCCcccceecccccccc
Q 023103 87 P-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPK--EGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLG 163 (287)
Q Consensus 87 p-~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~--~~~lP~p~~~~~~l~~~F~~~Gft~~E~VaL~GaHTiG 163 (287)
| +|||||||||||++||+.+|||.|+|++||+|+..|.+ .+.||.|+.+++++++.|+++||+++|||+|+||||||
T Consensus 91 p~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~d~VaL~GaHTiG 170 (298)
T cd00693 91 PGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGLTVTDLVALSGAHTIG 170 (298)
T ss_pred CCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCCCHHHheeecccceee
Confidence 9 99999999999999999999999999999999987753 36899999999999999999999999999999999999
Q ss_pred cCCCC----C-CCCCC--------------------CC----------C-CCCCccChHHHHHHhhcccCCcccccchhh
Q 023103 164 RAHPE----R-SGFDG--------------------PW----------T-REPLKFDNSYFVELLNGESEGLLQLPTDKA 207 (287)
Q Consensus 164 ~~h~~----~-~g~~g--------------------~~----------~-~tP~~fDN~Yy~~ll~~~~~gll~l~SD~~ 207 (287)
++||. | ++|.| |+ + .||.+|||+||++|+.++ |+ |+||++
T Consensus 171 ~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~--gl--L~SD~~ 246 (298)
T cd00693 171 RAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGR--GL--LTSDQA 246 (298)
T ss_pred eeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhcc--cC--ccCCHH
Confidence 99994 2 23311 12 1 789999999999999998 88 899999
Q ss_pred ccCChhHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 023103 208 LLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFSPGSGS 250 (287)
Q Consensus 208 L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~g 250 (287)
|+.|++|+++|++||.||+.|+++|+.||+||+++||+||++|
T Consensus 247 L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~G 289 (298)
T cd00693 247 LLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQG 289 (298)
T ss_pred hccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCC
Confidence 9999999999999999999999999999999999999999999
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.6e-62 Score=460.47 Aligned_cols=231 Identities=29% Similarity=0.430 Sum_probs=205.6
Q ss_pred HHHHHHHHHHh-CCCc---hHHHHHHHHhhcCCCC-----CCCCCCCCCCCcCCh--hhhccCCCCchhHHHHHHHHHHh
Q 023103 16 KARRDLRALIA-YKNC---APIMLRLAWHDAGTYD-----VNTKTGGPNGSIRNE--EEYSHGSNNGLKIALDFCEEVKA 84 (287)
Q Consensus 16 ~~~~~l~~~~~-~~~~---aa~llRl~FHDc~~~d-----~s~~~gG~dgSil~~--~E~~~~~N~gl~~~~~~i~~ik~ 84 (287)
-+++||++.+. +..| |+.+|||+||||++|| ...+.|||||||++. .|+++++|.||+.+++.|+++++
T Consensus 19 ~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~~vvd~lk~~~e 98 (328)
T cd00692 19 DILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLDEIVEALRPFHQ 98 (328)
T ss_pred HHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHHHHHHHHHHHHH
Confidence 36778888765 5555 5669999999999999 467889999999874 58999999999877777777777
Q ss_pred hCCCCcHHHHHHHhhhhhhhh-cCCCccccCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHcCCCcccceecccccccc
Q 023103 85 KHPKITYADLYQLAGVVAVEV-TGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLG 163 (287)
Q Consensus 85 ~~p~VS~ADiialAa~~Av~~-~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gft~~E~VaL~GaHTiG 163 (287)
+++ |||||||+|||++||+. .|||.|+|++||+|++.+.++++||.|+.+++++++.|+++||+++|||+|+||||||
T Consensus 99 ~~c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~~l~~~F~~~Gf~~~E~VaLsGAHTiG 177 (328)
T cd00692 99 KHN-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVDKILARFADAGFSPDELVALLAAHSVA 177 (328)
T ss_pred hcC-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHHHhhhccccccc
Confidence 764 99999999999999995 5999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCC-CCCCCCCccChHHHHHHh-hccc---------------CCcccccchhhccCChhHHHHHHHhhcCHH
Q 023103 164 RAHPERSGFDG-PWTREPLKFDNSYFVELL-NGES---------------EGLLQLPTDKALLEDPEFRRYVELYAKDED 226 (287)
Q Consensus 164 ~~h~~~~g~~g-~~~~tP~~fDN~Yy~~ll-~~~~---------------~gll~l~SD~~L~~d~~t~~~V~~yA~d~~ 226 (287)
++|......+| +|+.||.+|||+||+|++ +++. +|+++|+||++|+.|++|+.+|++||.||+
T Consensus 178 ~a~~~Dps~~g~p~D~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~ 257 (328)
T cd00692 178 AQDFVDPSIAGTPFDSTPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQA 257 (328)
T ss_pred ccCCCCCCCCCCCCCCCcchhcHHHHHHHHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHH
Confidence 99975555555 889999999999999988 4432 256789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCC
Q 023103 227 AFFRDYAASHKKLSELGFSPG 247 (287)
Q Consensus 227 ~F~~~Fa~Am~Km~~lgv~tg 247 (287)
+|+++|++||+||+++||...
T Consensus 258 ~f~~~Fa~Am~KLs~lgv~~~ 278 (328)
T cd00692 258 KMNAAFAAAMLKLSLLGQDNI 278 (328)
T ss_pred HHHHHHHHHHHHHHcCCCCcc
Confidence 999999999999999999855
No 8
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=8.9e-59 Score=444.63 Aligned_cols=244 Identities=36% Similarity=0.572 Sum_probs=219.2
Q ss_pred ChhHHHHHH-----HHHHHHHHHHhCC---------CchHHHHHHHHhhcCCCCCCCCCCCCC-CCcCChhhhccCCCCc
Q 023103 7 DTEYLKEID-----KARRDLRALIAYK---------NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYSHGSNNG 71 (287)
Q Consensus 7 ~~~y~~~~~-----~~~~~l~~~~~~~---------~~aa~llRl~FHDc~~~d~s~~~gG~d-gSil~~~E~~~~~N~g 71 (287)
+++|.++++ .+++||++++.+. .++|-+|||+||+++|||.+++.||++ |+|++++|.+++.|.|
T Consensus 32 ~~~~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~~~~N~g 111 (409)
T cd00649 32 DFNYAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNSWPDNVN 111 (409)
T ss_pred CCCHHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccCcHhhhh
Confidence 478988864 4799999998864 799999999999999999999999998 7999999999999999
Q ss_pred hhHHHHHHHHHHhhCC-CCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCC--------------------------
Q 023103 72 LKIALDFCEEVKAKHP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISP-------------------------- 124 (287)
Q Consensus 72 l~~~~~~i~~ik~~~p-~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~-------------------------- 124 (287)
|+++..+|++||+++| .||+||+|+||+++||+.+|||.|+|.+||.|+..+.
T Consensus 112 L~~a~~~L~pik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~p 191 (409)
T cd00649 112 LDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENP 191 (409)
T ss_pred HHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccc
Confidence 9999999999999998 7999999999999999999999999999999997532
Q ss_pred ------------CCC--CCCCCCCChHHHHHHHHHcCCCcccceec-ccccccccCCCCC--------------------
Q 023103 125 ------------KEG--RLPDAKRGAPHLRDIFYRMGLSDKDIVAL-SGGHTLGRAHPER-------------------- 169 (287)
Q Consensus 125 ------------~~~--~lP~p~~~~~~l~~~F~~~Gft~~E~VaL-~GaHTiG~~h~~~-------------------- 169 (287)
|++ .+|.|..++++|++.|.+||||.+||||| +||||||++||..
T Consensus 192 l~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLg 271 (409)
T cd00649 192 LAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLG 271 (409)
T ss_pred hhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCCCCCCcCHHHHHhhc
Confidence 233 69999999999999999999999999999 5999999999942
Q ss_pred ---------------CCCCCCCCCCCCccChHHHHHHhhccc--------------------------------CCcccc
Q 023103 170 ---------------SGFDGPWTREPLKFDNSYFVELLNGES--------------------------------EGLLQL 202 (287)
Q Consensus 170 ---------------~g~~g~~~~tP~~fDN~Yy~~ll~~~~--------------------------------~gll~l 202 (287)
++++|+|+.||.+|||+||++|++.+| .++.+|
T Consensus 272 w~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL 351 (409)
T cd00649 272 WKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPMML 351 (409)
T ss_pred ccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCcccc
Confidence 357788999999999999999998432 145669
Q ss_pred cchhhccCChhHHHHHHHhhcCHHHHHHHHHHHHHHHH--hCCCCCCCCC
Q 023103 203 PTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLS--ELGFSPGSGS 250 (287)
Q Consensus 203 ~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~--~lgv~tg~~g 250 (287)
+||++|+.|++|+.+|++||.|++.|+++|++||.||+ .+|+++==-|
T Consensus 352 ~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 352 TTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred hhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 99999999999999999999999999999999999994 6777664333
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=5.3e-58 Score=419.76 Aligned_cols=226 Identities=46% Similarity=0.710 Sum_probs=205.0
Q ss_pred HHHHHHHHHH-hCCCchHHHHHHHHhhcCCCCCCC-CCCCCCCCcCChhhhccCCCCchhHHHHHHHHHHhhCC---CCc
Q 023103 16 KARRDLRALI-AYKNCAPIMLRLAWHDAGTYDVNT-KTGGPNGSIRNEEEYSHGSNNGLKIALDFCEEVKAKHP---KIT 90 (287)
Q Consensus 16 ~~~~~l~~~~-~~~~~aa~llRl~FHDc~~~d~s~-~~gG~dgSil~~~E~~~~~N~gl~~~~~~i~~ik~~~p---~VS 90 (287)
.++.+|+..+ +++.+++.+|||+||||++++.+. ..|||||||++++|+++|+|.|+.+++++|++||++++ +||
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~~~~~vS 81 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYDGGNPVS 81 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcCCCCccc
Confidence 3456665543 478999999999999999999887 78999999999999999999998889999999999985 899
Q ss_pred HHHHHHHhhhhhhhhc--CCCccccCCCCCCCC-----CCCCCCCCCCCCCChHHHHHHHHHcCCCcccceecc-ccccc
Q 023103 91 YADLYQLAGVVAVEVT--GGPTVDFVPGRKDSK-----ISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALS-GGHTL 162 (287)
Q Consensus 91 ~ADiialAa~~Av~~~--GGP~~~v~~GR~D~~-----~s~~~~~lP~p~~~~~~l~~~F~~~Gft~~E~VaL~-GaHTi 162 (287)
|||||++|+++||+.+ |||.|++++||+|++ .+.|.+++|.|..+++++++.|.++||+++|||||+ |+||+
T Consensus 82 ~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~GaHti 161 (255)
T cd00314 82 RADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSAGAHTL 161 (255)
T ss_pred HHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhccCCeec
Confidence 9999999999999999 999999999999999 556778899999999999999999999999999999 99999
Q ss_pred -ccCCCCCCCCC--CCCCCCCCccChHHHHHHhhcccC------------CcccccchhhccCChhHHHHHHHhhcCHHH
Q 023103 163 -GRAHPERSGFD--GPWTREPLKFDNSYFVELLNGESE------------GLLQLPTDKALLEDPEFRRYVELYAKDEDA 227 (287)
Q Consensus 163 -G~~h~~~~g~~--g~~~~tP~~fDN~Yy~~ll~~~~~------------gll~l~SD~~L~~d~~t~~~V~~yA~d~~~ 227 (287)
|++||...+.. ++|+.||.+|||+||++|++++++ ++.+|+||+.|+.|++|+.+|++||.|++.
T Consensus 162 ~G~~~~~~~~~~~~~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~ 241 (255)
T cd00314 162 GGKNHGDLLNYEGSGLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEK 241 (255)
T ss_pred cCcccCCCCCcccCCCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHH
Confidence 99999765443 578899999999999999998753 234489999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 023103 228 FFRDYAASHKKLSE 241 (287)
Q Consensus 228 F~~~Fa~Am~Km~~ 241 (287)
|+++|++||.||++
T Consensus 242 f~~~Fa~a~~Km~~ 255 (255)
T cd00314 242 FFEDFAKAWIKMVN 255 (255)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999974
No 10
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=4.4e-58 Score=415.68 Aligned_cols=197 Identities=46% Similarity=0.725 Sum_probs=170.8
Q ss_pred HHHHHHHHHh-CCCchHHHHHHHHhhcCCCCCCCCCCCCCCCcCC-hhhhccCCCCchhHHHHHHHHHHhh----CC-CC
Q 023103 17 ARRDLRALIA-YKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRN-EEEYSHGSNNGLKIALDFCEEVKAK----HP-KI 89 (287)
Q Consensus 17 ~~~~l~~~~~-~~~~aa~llRl~FHDc~~~d~s~~~gG~dgSil~-~~E~~~~~N~gl~~~~~~i~~ik~~----~p-~V 89 (287)
+|++|++.+. +++++|+||||+||||++| |||||||++ .+|+++++|.||++++++|++||++ || +|
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~V 74 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVY------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVV 74 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTH------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccc------cccccceeccccccccccccCcceeeechhhHHhhhcccccCCC
Confidence 4677776554 7999999999999999954 999999975 7899999999998899999999975 88 89
Q ss_pred cHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCCCCC--CCCCCCCChHHHHHHHHHcCCCcccceecccccccccCCC
Q 023103 90 TYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKEG--RLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHP 167 (287)
Q Consensus 90 S~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~--~lP~p~~~~~~l~~~F~~~Gft~~E~VaL~GaHTiG~~h~ 167 (287)
||||||++|+++||+.+|||.|+|++||+|++.+.+.+ +||.|+.+++++++.|+++|||++|||||+||||||++||
T Consensus 75 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c 154 (230)
T PF00141_consen 75 SCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHC 154 (230)
T ss_dssp -HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESG
T ss_pred CHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhcceeccccccccee
Confidence 99999999999999999999999999999999999654 5999999999999999999999999999999999999999
Q ss_pred CCCC---------CC--------------C-CCCCCCCccChHHHHHHhhcccCCcccccchhhccCChhHHHHHHHhhc
Q 023103 168 ERSG---------FD--------------G-PWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAK 223 (287)
Q Consensus 168 ~~~g---------~~--------------g-~~~~tP~~fDN~Yy~~ll~~~~~gll~l~SD~~L~~d~~t~~~V~~yA~ 223 (287)
.... ++ . +++ ||.+|||+||+++++++ |+ |+||++|++|++|+++|++||+
T Consensus 155 ~~f~rl~~~~dp~~d~~~~~~~C~~~~~~~~~~d-tp~~fDN~Yy~~ll~~~--gl--l~SD~~L~~d~~t~~~V~~yA~ 229 (230)
T PF00141_consen 155 SSFSRLYFPPDPTMDPGYAGQNCNSGGDNGVPLD-TPTVFDNSYYKNLLNGR--GL--LPSDQALLNDPETRPIVERYAQ 229 (230)
T ss_dssp GCTGGTSCSSGTTSTHHHHHHSSSTSGCTCEESS-STTS-SSHHHHHHHHTE--EE--EHHHHHHHHSTTHHHHHHHHHH
T ss_pred ccccccccccccccccccceeccCCCcccccccc-CCCcchhHHHHHHhcCC--Cc--CHHHHHHhcCHHHHHHHHHHhc
Confidence 6211 00 0 124 89999999999999998 77 8999999999999999999997
Q ss_pred C
Q 023103 224 D 224 (287)
Q Consensus 224 d 224 (287)
|
T Consensus 230 d 230 (230)
T PF00141_consen 230 D 230 (230)
T ss_dssp T
T ss_pred C
Confidence 6
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=2.1e-55 Score=444.84 Aligned_cols=235 Identities=37% Similarity=0.576 Sum_probs=213.6
Q ss_pred ChhHHHHHHH-----HHHHHHHHHhCC---------CchHHHHHHHHhhcCCCCCCCCCCCCC-CCcCChhhhccCCCCc
Q 023103 7 DTEYLKEIDK-----ARRDLRALIAYK---------NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYSHGSNNG 71 (287)
Q Consensus 7 ~~~y~~~~~~-----~~~~l~~~~~~~---------~~aa~llRl~FHDc~~~d~s~~~gG~d-gSil~~~E~~~~~N~g 71 (287)
+++|.+++++ +|+||++++++. .++|-+|||+||+++|||.+++.||++ |+|+|.+|++|+.|.+
T Consensus 42 ~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~sw~~N~~ 121 (716)
T TIGR00198 42 DFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNSWPDNVN 121 (716)
T ss_pred CccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccCchhhhh
Confidence 4899999877 799999999864 689999999999999999999999996 7999999999999999
Q ss_pred hhHHHHHHHHHHhhCC-CCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCC--------------------------
Q 023103 72 LKIALDFCEEVKAKHP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISP-------------------------- 124 (287)
Q Consensus 72 l~~~~~~i~~ik~~~p-~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~-------------------------- 124 (287)
|+++..++++||++|| .|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 122 Ldka~~lL~pIk~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~ 201 (716)
T TIGR00198 122 LDKARRLLWPIKKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPL 201 (716)
T ss_pred HHHHHHHHHHHHHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccc
Confidence 9999999999999999 8999999999999999999999999999999995331
Q ss_pred -----------CCC--CCCCCCCChHHHHHHHHHcCCCcccceecc-cccccccCCCCC---------------------
Q 023103 125 -----------KEG--RLPDAKRGAPHLRDIFYRMGLSDKDIVALS-GGHTLGRAHPER--------------------- 169 (287)
Q Consensus 125 -----------~~~--~lP~p~~~~~~l~~~F~~~Gft~~E~VaL~-GaHTiG~~h~~~--------------------- 169 (287)
+++ .+|.|..++++|++.|.++|||.+|||||+ ||||||++||..
T Consensus 202 a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~ 281 (716)
T TIGR00198 202 AATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGW 281 (716)
T ss_pred hhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccCCCCCCcCHHHHHHhcc
Confidence 122 699999999999999999999999999996 999999999941
Q ss_pred --------------CCCCCCCCCCCCccChHHHHHHhhcccC------------------------------Ccccccch
Q 023103 170 --------------SGFDGPWTREPLKFDNSYFVELLNGESE------------------------------GLLQLPTD 205 (287)
Q Consensus 170 --------------~g~~g~~~~tP~~fDN~Yy~~ll~~~~~------------------------------gll~l~SD 205 (287)
++++|+|+.||.+|||+||+||++++|+ ...+|+||
T Consensus 282 ~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SD 361 (716)
T TIGR00198 282 HNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDAD 361 (716)
T ss_pred cCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCccchh
Confidence 3456889999999999999999986210 24458999
Q ss_pred hhccCChhHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 023103 206 KALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSE 241 (287)
Q Consensus 206 ~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 241 (287)
++|..|++++++|++||.|++.|+++|++||.||++
T Consensus 362 laL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~ 397 (716)
T TIGR00198 362 LALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTH 397 (716)
T ss_pred HHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999995
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.8e-53 Score=427.48 Aligned_cols=235 Identities=37% Similarity=0.593 Sum_probs=213.2
Q ss_pred ChhHHHHHHH-----HHHHHHHHHhCC---------CchHHHHHHHHhhcCCCCCCCCCCCCC-CCcCChhhhccCCCCc
Q 023103 7 DTEYLKEIDK-----ARRDLRALIAYK---------NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYSHGSNNG 71 (287)
Q Consensus 7 ~~~y~~~~~~-----~~~~l~~~~~~~---------~~aa~llRl~FHDc~~~d~s~~~gG~d-gSil~~~E~~~~~N~g 71 (287)
+++|.+++++ +|+||++++++. .++|-+|||+||+++|||.+++.||++ |+|++.+|.+|+.|.|
T Consensus 44 ~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~w~~N~g 123 (726)
T PRK15061 44 DFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNVN 123 (726)
T ss_pred CCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcccccchhhhh
Confidence 4899998765 799999999864 689999999999999999999999997 7999999999999999
Q ss_pred hhHHHHHHHHHHhhCC-CCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCCC-------------------------
Q 023103 72 LKIALDFCEEVKAKHP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPK------------------------- 125 (287)
Q Consensus 72 l~~~~~~i~~ik~~~p-~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~------------------------- 125 (287)
|+++..+|++||+++| .||+||+|+||+.+||+.+|||.++|.+||.|...+..
T Consensus 124 L~ka~~~L~pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~ 203 (726)
T PRK15061 124 LDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLEN 203 (726)
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCcccccccccccccccccccc
Confidence 9999999999999998 89999999999999999999999999999999865321
Q ss_pred --------------C--CCCCCCCCChHHHHHHHHHcCCCcccceecc-cccccccCCCCC-------------------
Q 023103 126 --------------E--GRLPDAKRGAPHLRDIFYRMGLSDKDIVALS-GGHTLGRAHPER------------------- 169 (287)
Q Consensus 126 --------------~--~~lP~p~~~~~~l~~~F~~~Gft~~E~VaL~-GaHTiG~~h~~~------------------- 169 (287)
+ ..+|.|..++.+|++.|.+||||.+|||||+ ||||||++||..
T Consensus 204 pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgL 283 (726)
T PRK15061 204 PLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGL 283 (726)
T ss_pred chhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcccccCCCCCcCHHHHHhc
Confidence 1 1279999999999999999999999999995 999999999952
Q ss_pred ----------------CCCCCCCCCCCCccChHHHHHHhhcccC--------------------------------Cccc
Q 023103 170 ----------------SGFDGPWTREPLKFDNSYFVELLNGESE--------------------------------GLLQ 201 (287)
Q Consensus 170 ----------------~g~~g~~~~tP~~fDN~Yy~~ll~~~~~--------------------------------gll~ 201 (287)
++++|+|+.||++|||+||++|+.++|+ ++.+
T Consensus 284 gw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~M 363 (726)
T PRK15061 284 GWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTM 363 (726)
T ss_pred cccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccccCccc
Confidence 2467889999999999999999986421 2567
Q ss_pred ccchhhccCChhHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 023103 202 LPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSE 241 (287)
Q Consensus 202 l~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 241 (287)
|+||++|..||+++.+|++|+.|++.|+++|++||.||++
T Consensus 364 LtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~h 403 (726)
T PRK15061 364 LTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTH 403 (726)
T ss_pred ccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999965
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=1.3e-52 Score=383.66 Aligned_cols=209 Identities=29% Similarity=0.448 Sum_probs=179.7
Q ss_pred hCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCcCChhhhccCCCCchh--HHHHHHHHHHhhCCCCcHHHHHHHhhhhhh
Q 023103 26 AYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLK--IALDFCEEVKAKHPKITYADLYQLAGVVAV 103 (287)
Q Consensus 26 ~~~~~aa~llRl~FHDc~~~d~s~~~gG~dgSil~~~E~~~~~N~gl~--~~~~~i~~ik~~~p~VS~ADiialAa~~Av 103 (287)
.++..+++||||+||||++||...++|||||||++ |..++||.|++ ..+..++.++. ++||||||||||+++||
T Consensus 37 ~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIll--e~~~~En~G~~~n~~l~~~~~i~~--~~VScADiialAa~~AV 112 (264)
T cd08201 37 PGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQY--ELDRPENIGSGFNTTLNFFVNFYS--PRSSMADLIAMGVVTSV 112 (264)
T ss_pred CCccHHHHHHHHHHHhhcCcccCCCCCCCCcceee--cCCChhhccCchhhccccceeecc--CccCHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999998 56788998875 33444444432 48999999999999999
Q ss_pred hhcCCCccccCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHcCCCcccceeccc-ccccccCCCCCC------CCC--C
Q 023103 104 EVTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSG-GHTLGRAHPERS------GFD--G 174 (287)
Q Consensus 104 ~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gft~~E~VaL~G-aHTiG~~h~~~~------g~~--g 174 (287)
+.||||.|+|++||+|++.+.+.+ ||.|+.++++|++.|+++||+++|||+|+| |||||++||..+ ++. +
T Consensus 113 ~~~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~g~~~~~ 191 (264)
T cd08201 113 ASCGGPVVPFRAGRIDATEAGQAG-VPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIVPPGSVPDT 191 (264)
T ss_pred HHcCCCeecccccCCCcccccccc-CCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccchhhcCCccccCC
Confidence 999999999999999999999887 999999999999999999999999999995 999999999865 333 3
Q ss_pred --CCCCCCCccChHHHHHHhhcccCCcccc------cchhhccCChhHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 023103 175 --PWTREPLKFDNSYFVELLNGESEGLLQL------PTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSE 241 (287)
Q Consensus 175 --~~~~tP~~fDN~Yy~~ll~~~~~gll~l------~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 241 (287)
||++||.+|||+||.++++++++|+|++ .||..++... -...++..| +++.|.+.++..+.||++
T Consensus 192 ~~p~dstp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d-~n~t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 192 VLQFFDTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSD-GNVTMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred CCCCCCCccccchHHHHHHhcCCCCCceeecCCCCccchhhheecC-ccHHHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999888765 5566665432 234456666 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=1.8e-48 Score=360.42 Aligned_cols=237 Identities=30% Similarity=0.443 Sum_probs=203.5
Q ss_pred CCccChhHHHHHHHHHHHHHH-HHhCCCchHHHHHHHHhhcCCCCCCCCCCCCCCC-cCChhhhccCCCCc--hhHHHHH
Q 023103 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNNG--LKIALDF 78 (287)
Q Consensus 3 ~~~~~~~y~~~~~~~~~~l~~-~~~~~~~aa~llRl~FHDc~~~d~s~~~gG~dgS-il~~~E~~~~~N~g--l~~~~~~ 78 (287)
+|.++++++.+-+ .+.|++ ++....+++.+|||+||++.|||.+++.||++|+ |++++|++|+.|.+ |++++.+
T Consensus 3 ~p~~~~~~i~~~d--i~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~~ 80 (297)
T cd08200 3 IPAVDYELIDDAD--IAALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLAV 80 (297)
T ss_pred CCCCCccccCHHH--HHHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHHH
Confidence 7999988887543 334443 3445678999999999999999999999999996 99999999999999 9999999
Q ss_pred HHHHHhhCC-------CCcHHHHHHHhhhhhhhhcCC-----CccccCCCCCCCCCCCC--C---CCCCCCC--------
Q 023103 79 CEEVKAKHP-------KITYADLYQLAGVVAVEVTGG-----PTVDFVPGRKDSKISPK--E---GRLPDAK-------- 133 (287)
Q Consensus 79 i~~ik~~~p-------~VS~ADiialAa~~Av~~~GG-----P~~~v~~GR~D~~~s~~--~---~~lP~p~-------- 133 (287)
+++||+++| .||.||+|+||+.+||+.+|| |.++|.+||.|++.+.. + .++|.+.
T Consensus 81 Le~ik~~~~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~ 160 (297)
T cd08200 81 LEGIQKEFNESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKK 160 (297)
T ss_pred HHHHHHHhcccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCccccccccc
Confidence 999999997 799999999999999999999 99999999999987642 1 2345332
Q ss_pred ----CChHHHHHHHHHcCCCcccceeccccc-ccccCCCCCCCCCCCCCCCCCccChHHHHHHhhcc--c----------
Q 023103 134 ----RGAPHLRDIFYRMGLSDKDIVALSGGH-TLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE--S---------- 196 (287)
Q Consensus 134 ----~~~~~l~~~F~~~Gft~~E~VaL~GaH-TiG~~h~~~~g~~g~~~~tP~~fDN~Yy~~ll~~~--~---------- 196 (287)
.+.+.|++.|.++|||++|||||+||| ++|..|. ++ +.|+|+.+|.+|||.||++|++.. |
T Consensus 161 ~~~~~~~~~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~-~s-~~G~wT~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~ 238 (297)
T cd08200 161 GYRVPPEEMLVDKAQLLTLTAPEMTVLVGGLRVLGANYG-GS-KHGVFTDRPGVLTNDFFVNLLDMSTEWKPADEDDGLF 238 (297)
T ss_pred CCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCC-CC-CCCCCcCCCCccccHHHHHHhcccceeeecCCCCCce
Confidence 234679999999999999999999997 7999886 45 469999999999999999999631 1
Q ss_pred ------CCcc---cccchhhccCChhHHHHHHHhhcC--HHHHHHHHHHHHHHHHhCC
Q 023103 197 ------EGLL---QLPTDKALLEDPEFRRYVELYAKD--EDAFFRDYAASHKKLSELG 243 (287)
Q Consensus 197 ------~gll---~l~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km~~lg 243 (287)
.|.+ ++++|..|.+|++.|++|+.||.| ++.|+++|++||.||+++.
T Consensus 239 ~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 239 EGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred eeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 1222 378899999999999999999998 9999999999999999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=8.2e-43 Score=353.30 Aligned_cols=237 Identities=29% Similarity=0.422 Sum_probs=202.2
Q ss_pred CCccChhHHHHHHHHHHHHH-HHHhCCCchHHHHHHHHhhcCCCCCCCCCCCCCCC-cCChhhhccCCC--CchhHHHHH
Q 023103 3 LPVVDTEYLKEIDKARRDLR-ALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSN--NGLKIALDF 78 (287)
Q Consensus 3 ~~~~~~~y~~~~~~~~~~l~-~~~~~~~~aa~llRl~FHDc~~~d~s~~~gG~dgS-il~~~E~~~~~N--~gl~~~~~~ 78 (287)
+|.++++++ +..++.|+ +++.+.-+++.+||++||++.|||.+++.||+||+ |++++|++|+.| .||.+++.+
T Consensus 422 ~p~~~~~~v---~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~ 498 (716)
T TIGR00198 422 LPPVDYTLS---EGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAKVLAV 498 (716)
T ss_pred CCCCCchhH---HHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHHHHHH
Confidence 789998887 33344565 45566778999999999999999999999999996 999999999999 899999999
Q ss_pred HHHHHhhCC--CCcHHHHHHHhhhhhhhhc---CCC--ccccCCCCCCCCCCC--CCCCCC---C------------CCC
Q 023103 79 CEEVKAKHP--KITYADLYQLAGVVAVEVT---GGP--TVDFVPGRKDSKISP--KEGRLP---D------------AKR 134 (287)
Q Consensus 79 i~~ik~~~p--~VS~ADiialAa~~Av~~~---GGP--~~~v~~GR~D~~~s~--~~~~lP---~------------p~~ 134 (287)
+++||+++| .||.||+|+||+.+|||.+ ||| .+||.+||.|++... +++..| . ...
T Consensus 499 Le~Ik~~f~~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~ 578 (716)
T TIGR00198 499 LEKIQAEFAKGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVT 578 (716)
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCC
Confidence 999999999 8999999999999999998 897 589999999998764 232222 1 122
Q ss_pred ChHHHHHHHHHcCCCcccceecccc-cccccCCCCCCCCCCCCCCCCCccChHHHHHHhhcc--c---------------
Q 023103 135 GAPHLRDIFYRMGLSDKDIVALSGG-HTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE--S--------------- 196 (287)
Q Consensus 135 ~~~~l~~~F~~~Gft~~E~VaL~Ga-HTiG~~h~~~~g~~g~~~~tP~~fDN~Yy~~ll~~~--~--------------- 196 (287)
..+.|++.|..+|||+.|||||+|| |++|++|.. + +.|+|+.+|.+|||.||++|++.. |
T Consensus 579 ~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~-s-~~G~~T~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr 656 (716)
T TIGR00198 579 PEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGG-S-KHGVFTDRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDR 656 (716)
T ss_pred HHHHHHHHHHhCCCChHHHHheecchhhccccCCC-C-CCCCCcCCCCccccHHHHHHhcCCceeeecCCCCceeeeecC
Confidence 3456889999999999999999999 599999984 3 469999999999999999999732 1
Q ss_pred -CCcccc---cchhhccCChhHHHHHHHhhcCH--HHHHHHHHHHHHHHHhCCC
Q 023103 197 -EGLLQL---PTDKALLEDPEFRRYVELYAKDE--DAFFRDYAASHKKLSELGF 244 (287)
Q Consensus 197 -~gll~l---~SD~~L~~d~~t~~~V~~yA~d~--~~F~~~Fa~Am~Km~~lgv 244 (287)
.|.+++ ++|..|.+|++.|++|+.||+|+ +.|++||++||.|+++++-
T Consensus 657 ~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ldr 710 (716)
T TIGR00198 657 QTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLDR 710 (716)
T ss_pred CCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHHhCCC
Confidence 133333 78999999999999999999997 8999999999999999864
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=3.3e-42 Score=347.44 Aligned_cols=238 Identities=31% Similarity=0.456 Sum_probs=204.1
Q ss_pred CCccChhHHHHHHHHHHHHHH-HHhCCCchHHHHHHHHhhcCCCCCCCCCCCCCCC-cCChhhhccCCCC--chhHHHHH
Q 023103 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNN--GLKIALDF 78 (287)
Q Consensus 3 ~~~~~~~y~~~~~~~~~~l~~-~~~~~~~aa~llRl~FHDc~~~d~s~~~gG~dgS-il~~~E~~~~~N~--gl~~~~~~ 78 (287)
+|.|+.+++++-+ +..|++ ++.+.-..+.+||++||++.|||.+++.||+||+ |++++|++|+.|. +|.+++++
T Consensus 428 ~p~~~~~~~~~~d--i~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~ 505 (726)
T PRK15061 428 VPAVDHELIDDAD--IAALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLAKVLAV 505 (726)
T ss_pred CCCCCcccCCHHH--HHHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHHHHHHH
Confidence 7899999887655 446664 4445667899999999999999999999999996 9999999999999 99999999
Q ss_pred HHHHHhhC-------CCCcHHHHHHHhhhhhhhhc---CC--CccccCCCCCCCCCCCC--C---CCCCCCC--------
Q 023103 79 CEEVKAKH-------PKITYADLYQLAGVVAVEVT---GG--PTVDFVPGRKDSKISPK--E---GRLPDAK-------- 133 (287)
Q Consensus 79 i~~ik~~~-------p~VS~ADiialAa~~Av~~~---GG--P~~~v~~GR~D~~~s~~--~---~~lP~p~-------- 133 (287)
+++||+++ |.||.||+|+||+.+|||.+ || |.+|+.+||.|++.... + .++|...
T Consensus 506 LE~Ik~~f~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~ 585 (726)
T PRK15061 506 LEGIQAEFNAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKK 585 (726)
T ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccc
Confidence 99999997 68999999999999999998 58 99999999999987642 2 2456532
Q ss_pred ----CChHHHHHHHHHcCCCcccceeccccc-ccccCCCCCCCCCCCCCCCCCccChHHHHHHhhcc--c----------
Q 023103 134 ----RGAPHLRDIFYRMGLSDKDIVALSGGH-TLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE--S---------- 196 (287)
Q Consensus 134 ----~~~~~l~~~F~~~Gft~~E~VaL~GaH-TiG~~h~~~~g~~g~~~~tP~~fDN~Yy~~ll~~~--~---------- 196 (287)
...+.|++.|.++|||+.|||||+||| ++|..|. ++ +.|+|+.+|.+|||.||+||++.. |
T Consensus 586 ~~~~~~e~~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~-~S-~~G~~T~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~y 663 (726)
T PRK15061 586 GYSVSPEELLVDKAQLLTLTAPEMTVLVGGLRVLGANYG-GS-KHGVFTDRPGVLTNDFFVNLLDMGTEWKPTDEDEEVY 663 (726)
T ss_pred cCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCC-CC-CCCCCcCCCCccccHHHHHHhcCCceeeecCCCCCce
Confidence 123678999999999999999999997 7888885 45 479999999999999999999632 1
Q ss_pred ------CCccc---ccchhhccCChhHHHHHHHhhcC--HHHHHHHHHHHHHHHHhCCC
Q 023103 197 ------EGLLQ---LPTDKALLEDPEFRRYVELYAKD--EDAFFRDYAASHKKLSELGF 244 (287)
Q Consensus 197 ------~gll~---l~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km~~lgv 244 (287)
.|.++ +++|..|.+|++.|++|+.||+| ++.|++||++||.|+++++-
T Consensus 664 e~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeldr 722 (726)
T PRK15061 664 EGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLDR 722 (726)
T ss_pred eeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCCC
Confidence 12222 47899999999999999999998 99999999999999999864
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-38 Score=310.20 Aligned_cols=242 Identities=37% Similarity=0.596 Sum_probs=214.7
Q ss_pred ccChhHHHHHHH-----HHHHHHHHHhCC---------CchHHHHHHHHhhcCCCCCCCCCCCCC-CCcCChhhhccCCC
Q 023103 5 VVDTEYLKEIDK-----ARRDLRALIAYK---------NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYSHGSN 69 (287)
Q Consensus 5 ~~~~~y~~~~~~-----~~~~l~~~~~~~---------~~aa~llRl~FHDc~~~d~s~~~gG~d-gSil~~~E~~~~~N 69 (287)
-.+++|.+++++ +++||++++.+. ..++-+|||+||-++||+..++.||+. |..+|.++.+||.|
T Consensus 55 g~~fdYaeefk~lD~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFaPlnSWPDN 134 (730)
T COG0376 55 GEDFDYAEEFKSLDLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDN 134 (730)
T ss_pred ccchHHHHHhhhccHHHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecccccCCCcc
Confidence 356999999876 688899988764 468899999999999999999999987 58999999999999
Q ss_pred CchhHHHHHHHHHHhhCC-CCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCCC-----------------------
Q 023103 70 NGLKIALDFCEEVKAKHP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPK----------------------- 125 (287)
Q Consensus 70 ~gl~~~~~~i~~ik~~~p-~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~----------------------- 125 (287)
.+|+++..++++||++|+ .||+||+++|++.+|++.+|+|.+.|..||.|...|..
T Consensus 135 ~nLDKarRLLWPIKkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le 214 (730)
T COG0376 135 ANLDKARRLLWPIKKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLE 214 (730)
T ss_pred cchHHHHHHhhhHhHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCcccccccccccccccccc
Confidence 999999999999999999 99999999999999999999999999999999877743
Q ss_pred ---------------C--CCCCCCCCChHHHHHHHHHcCCCcccceecc-cccccccCCCCC------------------
Q 023103 126 ---------------E--GRLPDAKRGAPHLRDIFYRMGLSDKDIVALS-GGHTLGRAHPER------------------ 169 (287)
Q Consensus 126 ---------------~--~~lP~p~~~~~~l~~~F~~~Gft~~E~VaL~-GaHTiG~~h~~~------------------ 169 (287)
+ +..|.|-.+..+++..|++|+++.+|.|||+ ||||+|++|...
T Consensus 215 ~PlaavqMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~vg~ePe~a~ie~qG 294 (730)
T COG0376 215 NPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGPEPEAAPIEQQG 294 (730)
T ss_pred CchhhheeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhcCCCccccchhhhc
Confidence 1 3478888889999999999999999999998 599999999742
Q ss_pred -----------------CCCCCCCCCCCCccChHHHHHHhhcccC-------------------------------Cccc
Q 023103 170 -----------------SGFDGPWTREPLKFDNSYFVELLNGESE-------------------------------GLLQ 201 (287)
Q Consensus 170 -----------------~g~~g~~~~tP~~fDN~Yy~~ll~~~~~-------------------------------gll~ 201 (287)
+|..++|+.||++|||+||.+|+..+|+ .+.|
T Consensus 295 lGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~M 374 (730)
T COG0376 295 LGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMM 374 (730)
T ss_pred cccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCcee
Confidence 1234578999999999999999976531 4578
Q ss_pred ccchhhccCChhHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCCC
Q 023103 202 LPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFSP 246 (287)
Q Consensus 202 l~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~t 246 (287)
|.+|.+|.-||..+.|.++|..||+.|.+.|+.||.||..-++-+
T Consensus 375 lttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRDMGP 419 (730)
T COG0376 375 LTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRDMGP 419 (730)
T ss_pred eccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhccCCc
Confidence 999999999999999999999999999999999999999865543
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.83 E-value=7.6e-20 Score=178.95 Aligned_cols=236 Identities=30% Similarity=0.438 Sum_probs=183.7
Q ss_pred CCccChhHHHHHHHHHHHHH-HHHhCCCchHHHHHHHHhhcCCCCCCCCCCCCCC-CcCChhhhccCCCC--chhHHHHH
Q 023103 3 LPVVDTEYLKEIDKARRDLR-ALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNG-SIRNEEEYSHGSNN--GLKIALDF 78 (287)
Q Consensus 3 ~~~~~~~y~~~~~~~~~~l~-~~~~~~~~aa~llRl~FHDc~~~d~s~~~gG~dg-Sil~~~E~~~~~N~--gl~~~~~~ 78 (287)
+|+|+++..+ ..+..|+ +++.+.-....++-.+|..+.||..|++.||+|| .|++.+.++|+.|. -|.+++.+
T Consensus 439 iP~vd~~l~d---~di~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l~kvl~~ 515 (730)
T COG0376 439 LPAVDYELVD---ADIAALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAELAKVLAV 515 (730)
T ss_pred CCccccccch---HHHHHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHHHHHHHH
Confidence 7899988877 2344665 4566777789999999999999999999999998 79999999999996 57789999
Q ss_pred HHHHHhhCC-CCcHHHHHHHhhhhhhhhc---CCC--ccccCCCCCCCCCCCCC-----CCCC------------CCCCC
Q 023103 79 CEEVKAKHP-KITYADLYQLAGVVAVEVT---GGP--TVDFVPGRKDSKISPKE-----GRLP------------DAKRG 135 (287)
Q Consensus 79 i~~ik~~~p-~VS~ADiialAa~~Av~~~---GGP--~~~v~~GR~D~~~s~~~-----~~lP------------~p~~~ 135 (287)
++.|++++. .||.||+|+|++..+|+.+ .|- .+||..||.|++..... -.-| ....+
T Consensus 516 le~iq~~fnkkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~p 595 (730)
T COG0376 516 LEKIQKEFNKKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTP 595 (730)
T ss_pred HHHHHHHhcCccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCH
Confidence 999999886 7999999999999999875 454 56889999999765311 0011 11122
Q ss_pred hHHHHHHHHHcCCCcccceeccccc-ccccCCCCCCCCCCCCCCCCCccChHHHHHHhhccc--------C---------
Q 023103 136 APHLRDIFYRMGLSDKDIVALSGGH-TLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGES--------E--------- 197 (287)
Q Consensus 136 ~~~l~~~F~~~Gft~~E~VaL~GaH-TiG~~h~~~~g~~g~~~~tP~~fDN~Yy~~ll~~~~--------~--------- 197 (287)
..-|++.-+-.+||..||++|+||- -+|.-+. .+ -.|.++..|..+.|.||.||++... +
T Consensus 596 e~~LvDkAqlL~LtapemtVLiGGlRvLg~n~g-~s-~~GVfT~~pg~LtndFFvnLlDM~~~W~~~~~~~~~feg~Drk 673 (730)
T COG0376 596 EELLVDKAQLLTLTAPEMTVLIGGLRVLGANYG-GS-KHGVFTDRPGVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRK 673 (730)
T ss_pred HHHHHHHHHHhccCCccceEEEcceEeeccCCC-CC-ccceeccCcccccchhhhhhhhccceeeeccccccceeccccc
Confidence 3346788888999999999999884 4444332 11 2467888999999999999997431 1
Q ss_pred -Cccc---ccchhhccCChhHHHHHHHhhcC--HHHHHHHHHHHHHHHHhCC
Q 023103 198 -GLLQ---LPTDKALLEDPEFRRYVELYAKD--EDAFFRDYAASHKKLSELG 243 (287)
Q Consensus 198 -gll~---l~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km~~lg 243 (287)
|.+. ...|..+-+++..|++.+.|+++ ++.|.+||+.||.|..++.
T Consensus 674 tG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 674 TGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred cCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 2111 24577777899999999999974 8899999999999998874
No 19
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=81.19 E-value=1.1 Score=36.18 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=23.0
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCcc-hhhhh
Q 023103 232 YAASHKKLSELGFSPGSGSKSTANDC-TILAQ 262 (287)
Q Consensus 232 Fa~Am~Km~~lgv~tg~~g~~~~~~~-~~~~~ 262 (287)
.-.||.+|.++ ++-+|..|||+|| .+|-|
T Consensus 14 HE~AMrRLl~~--LRqsQ~~CTDteC~~d~~g 43 (103)
T PF11027_consen 14 HEMAMRRLLNL--LRQSQNYCTDTECLQDLPG 43 (103)
T ss_pred hHHHHHHHHHH--HHHhhCccCcchhhccCCC
Confidence 34589998776 8899999999999 55444
No 20
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=72.02 E-value=5 Score=33.36 Aligned_cols=34 Identities=24% Similarity=0.165 Sum_probs=26.2
Q ss_pred CCcchhhhhhhHHHHHHHHHHHHHHHHHHhhccC
Q 023103 254 ANDCTILAQGAVGVAVTVAVVILSYFYEVRKRMK 287 (287)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (287)
+--.+.+++-.+||...|..+||..+|-+|+|.|
T Consensus 60 ~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp SSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred CccccceeehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445678999999999999999988888887654
No 21
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=69.28 E-value=3.7 Score=31.66 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhCCCCC
Q 023103 227 AFFRDYAASHKKLSELGFSP 246 (287)
Q Consensus 227 ~F~~~Fa~Am~Km~~lgv~t 246 (287)
...+.|..||.||+.+|.++
T Consensus 2 ~m~~~F~~am~KlavLG~d~ 21 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHDR 21 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-G
T ss_pred hHHHHHHHHHHHHHHhcCCh
Confidence 45689999999999999864
No 22
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=57.93 E-value=3.1 Score=30.78 Aligned_cols=27 Identities=33% Similarity=0.694 Sum_probs=0.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhc
Q 023103 258 TILAQGAVGVAVTVAVVILSYFYEVRKR 285 (287)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (287)
+.+||+.+|+.+.+. +|+...|..|||
T Consensus 13 avIaG~Vvgll~ail-LIlf~iyR~rkk 39 (64)
T PF01034_consen 13 AVIAGGVVGLLFAIL-LILFLIYRMRKK 39 (64)
T ss_dssp -------------------------S--
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 456666666655544 445667888876
No 23
>COG1563 Predicted subunit of the Multisubunit Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=39.23 E-value=28 Score=27.27 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=17.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 023103 259 ILAQGAVGVAVTVAVVILSYFYEVRKRM 286 (287)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (287)
-+++++||++++.++. -+-+||++
T Consensus 59 AlTEA~vGa~l~t~v~----~~alrk~~ 82 (87)
T COG1563 59 ALTEALVGAGLSTAVY----AIALRKTL 82 (87)
T ss_pred HHHHHHHHhHHHHHHH----HHHHHHhH
Confidence 5789999999888764 45666654
No 24
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=36.47 E-value=9 Score=30.35 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=15.5
Q ss_pred hhhhhhhHHHHHHHHH--HHHHHHHHHhhc
Q 023103 258 TILAQGAVGVAVTVAV--VILSYFYEVRKR 285 (287)
Q Consensus 258 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 285 (287)
+..|+..+|+.+.|++ .+|-||+-.|+|
T Consensus 66 gaiagi~vg~~~~v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 66 GAIAGISVAVVAVVGGLVGFLCWWFVCRGK 95 (96)
T ss_pred ccEEEEEeehhhHHHHHHHHHhheeEEeec
Confidence 5667777776655432 244455444554
No 25
>PRK12346 transaldolase A; Provisional
Probab=35.21 E-value=22 Score=34.16 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhCCCCcHHHHHHHhhhhhhh--hcCCCccccCCCCCCCCCCCCC--CCC-CCCC---CChHHHHHHHHHc
Q 023103 75 ALDFCEEVKAKHPKITYADLYQLAGVVAVE--VTGGPTVDFVPGRKDSKISPKE--GRL-PDAK---RGAPHLRDIFYRM 146 (287)
Q Consensus 75 ~~~~i~~ik~~~p~VS~ADiialAa~~Av~--~~GGP~~~v~~GR~D~~~s~~~--~~l-P~p~---~~~~~l~~~F~~~ 146 (287)
++..+..++++ .|+|-=.+.+....++. .+|-..+..++||.|.+.-... ... |... ..+.++..+|++.
T Consensus 138 Gi~A~~~L~~~--GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~ 215 (316)
T PRK12346 138 GIRAAEELEKE--GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQH 215 (316)
T ss_pred HHHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHc
Confidence 44555555544 34443334444444443 3588899999999987533211 111 1112 3366777788888
Q ss_pred CCC----------cccceecccccc
Q 023103 147 GLS----------DKDIVALSGGHT 161 (287)
Q Consensus 147 Gft----------~~E~VaL~GaHT 161 (287)
|+. .+|+.+|.|+|.
T Consensus 216 ~~~T~Vm~ASfRn~~qi~alaG~d~ 240 (316)
T PRK12346 216 RYETIVMGASFRRTEQILALAGCDR 240 (316)
T ss_pred CCCcEEEecccCCHHHHHHHhCCCE
Confidence 865 345556667663
No 26
>PTZ00411 transaldolase-like protein; Provisional
Probab=32.15 E-value=28 Score=33.74 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhCCCCcHHHHHHHhhhhhhh--hcCCCccccCCCCCCCCCCCCC---CCCCCCC---CChHHHHHHHHH
Q 023103 74 IALDFCEEVKAKHPKITYADLYQLAGVVAVE--VTGGPTVDFVPGRKDSKISPKE---GRLPDAK---RGAPHLRDIFYR 145 (287)
Q Consensus 74 ~~~~~i~~ik~~~p~VS~ADiialAa~~Av~--~~GGP~~~v~~GR~D~~~s~~~---~~lP~p~---~~~~~l~~~F~~ 145 (287)
.++..+..++++ .|.|-=.+.+....|+. .+|-..+..++||.+.+.-.+. ...+... ..+.++...|+.
T Consensus 148 eGi~Aa~~L~~e--GI~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~ 225 (333)
T PTZ00411 148 EGIQAAKALEKE--GIHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKK 225 (333)
T ss_pred HHHHHHHHHHHC--CCceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHH
Confidence 345555555554 22222223333333332 2478889999999866533221 1112222 235567778888
Q ss_pred cCCC----------cccceeccccccc
Q 023103 146 MGLS----------DKDIVALSGGHTL 162 (287)
Q Consensus 146 ~Gft----------~~E~VaL~GaHTi 162 (287)
.|+. .+|+..|.|+|.+
T Consensus 226 ~g~~T~Im~ASfRn~~qi~~laG~D~l 252 (333)
T PTZ00411 226 HGYKTIVMGASFRNTGEILELAGCDKL 252 (333)
T ss_pred cCCCeEEEecccCCHHHHHHHHCCCEE
Confidence 8875 4556667788744
No 27
>PF09533 DUF2380: Predicted lipoprotein of unknown function (DUF2380); InterPro: IPR011755 This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N terminus; the others are predicted lipoproteins. The function is unknown.
Probab=31.98 E-value=60 Score=28.86 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.1
Q ss_pred hHHHHHHHHHcCCCcccceecccccc
Q 023103 136 APHLRDIFYRMGLSDKDIVALSGGHT 161 (287)
Q Consensus 136 ~~~l~~~F~~~Gft~~E~VaL~GaHT 161 (287)
..+|...|.++|++..|.+.++.-|.
T Consensus 107 a~~la~wF~~~Gi~IHd~ti~Ip~~v 132 (188)
T PF09533_consen 107 AEELAEWFERRGIDIHDYTIPIPRDV 132 (188)
T ss_pred cHHHHHHHHHcCCChhheeEecCHHH
Confidence 45799999999999999999886643
No 28
>PF15656 Tox-HDC: Toxin with a H, D/N and C signature
Probab=29.09 E-value=59 Score=26.95 Aligned_cols=48 Identities=25% Similarity=0.249 Sum_probs=29.7
Q ss_pred HcCCC--cccceecccccccccCCCCCCCCCCCCCCCCCccChHHHHHHhhc
Q 023103 145 RMGLS--DKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNG 194 (287)
Q Consensus 145 ~~Gft--~~E~VaL~GaHTiG~~h~~~~g~~g~~~~tP~~fDN~Yy~~ll~~ 194 (287)
+++++ ..++++|||.| |..+..+.-..+.....|...+++||++=++-
T Consensus 22 ar~~s~~~~~I~IlSGtH--G~~~G~nw~~~~~~~R~p~l~e~~f~~eD~~~ 71 (119)
T PF15656_consen 22 ARRPSGDNGDIHILSGTH--GYCSGQNWLSESNRLRRPGLKEKAFYKEDLRD 71 (119)
T ss_pred HhCcCCCCCCEEEEeCCC--CCccccchhhccccccCchhhhhhHHHHHHHH
Confidence 45555 88999999988 44433211000111346888999999887764
No 29
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=28.94 E-value=1.1e+02 Score=29.31 Aligned_cols=99 Identities=23% Similarity=0.226 Sum_probs=51.8
Q ss_pred CCCccChHHHHHHhhcccCCcccccchh------hccCChhHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCCCCCCCcc
Q 023103 179 EPLKFDNSYFVELLNGESEGLLQLPTDK------ALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFSPGSGSKS 252 (287)
Q Consensus 179 tP~~fDN~Yy~~ll~~~~~gll~l~SD~------~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~g~~ 252 (287)
+| .||-.+-.+.+... |+ +++.|+ .+..||+.|.+. --|.-.|.-.|+--+-=....++-.+.++++
T Consensus 17 tp-~F~~e~~~E~L~a~--Gl-qlp~e~y~~~~E~al~~p~VRRy~---~yNs~~fr~~~a~I~yivlw~~l~Stl~l~s 89 (308)
T PF14800_consen 17 TP-SFDPELCPEELMAQ--GL-QLPVEDYVHLMESALLDPQVRRYT---LYNSRYFRLLVAVIFYIVLWANLYSTLQLFS 89 (308)
T ss_pred cC-ccChhhCHHHHHhh--Cc-cccHHHHHHHHHHhccchhheeee---eecchHHHHHHHHHHHHHHHHHHHccchhhh
Confidence 78 99999999988876 75 466663 244555433321 1244445444443332222223344566675
Q ss_pred cCCcchhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 023103 253 TANDCTILAQGAVGVAVTVAVVILSYFYEVRK 284 (287)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (287)
-.+-....----++++..+..+|+...|.-||
T Consensus 90 lg~~wv~~Llv~l~ai~lt~~l~lv~~~~~rK 121 (308)
T PF14800_consen 90 LGSHWVGWLLVNLAAIFLTMALILVFMRHQRK 121 (308)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444322222222333344456666777776
No 30
>PRK06287 cobalt transport protein CbiN; Validated
Probab=26.84 E-value=78 Score=25.54 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=18.0
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHhhc
Q 023103 256 DCTILAQGAVGVAVTVAVVILSYFYEVRKR 285 (287)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (287)
=++++|+ ++|+++|+++..+ .++-+|||
T Consensus 77 ~g~ilsg-iiGv~i~l~l~~~-~~~~l~r~ 104 (107)
T PRK06287 77 IGEIIAM-VIGTLLVLALAYG-VGKIFKKK 104 (107)
T ss_pred hhHHHHH-HHHHHHHHHHHHH-HHHHHhcc
Confidence 3677775 8999888887665 33334443
No 31
>PRK05264 transcriptional repressor protein MetJ; Provisional
Probab=24.50 E-value=80 Score=25.09 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=26.9
Q ss_pred hccCChhHHHHHHHh--hcCHHHHHHHHHHHHH
Q 023103 207 ALLEDPEFRRYVELY--AKDEDAFFRDYAASHK 237 (287)
Q Consensus 207 ~L~~d~~t~~~V~~y--A~d~~~F~~~Fa~Am~ 237 (287)
.+++|.+||..|+.. |.|.++..+.|-.||+
T Consensus 35 kiLTdERTRRQvnNLRHATNSELLCEAFLHA~T 67 (105)
T PRK05264 35 KILTDERTRRQVNNLRHATNSELLCEAFLHAFT 67 (105)
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHHc
Confidence 467899999999765 7899999999999985
No 32
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=24.25 E-value=62 Score=30.46 Aligned_cols=32 Identities=34% Similarity=0.428 Sum_probs=20.7
Q ss_pred cccCCcc-----hhhhhhhHHHHHHHHHHHHHHHHHH
Q 023103 251 KSTANDC-----TILAQGAVGVAVTVAVVILSYFYEV 282 (287)
Q Consensus 251 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (287)
|+...|| .++.--+||+|+.+.|+|....|-+
T Consensus 258 Fg~a~~C~~D~~~~~vPIaVG~~La~lvlivLiaYli 294 (306)
T PF01299_consen 258 FGTAEECSSDDTSDLVPIAVGAALAGLVLIVLIAYLI 294 (306)
T ss_pred CCChhcCCcCCccchHHHHHHHHHHHHHHHHHHhhee
Confidence 5554444 5788888998887666655444444
No 33
>cd00490 Met_repressor_MetJ Met Repressor, MetJ. MetJ is a bacterial regulatory protein that uses S-adenosylmethionine (SAM) as a corepressor to regulate the production of Methionine. MetJ binds arrays of two to five adjacent copies of an eight base-pair 'metbox' sequence. MetJ forms sufficiently strong interactions with the sugar-phosphate backbone to accomodate sequence variation in natural operators. However, it is very sensitive to particular base changes in the operator. MetJ exists as a homodimer.
Probab=23.65 E-value=86 Score=24.79 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=26.8
Q ss_pred hccCChhHHHHHHHh--hcCHHHHHHHHHHHHH
Q 023103 207 ALLEDPEFRRYVELY--AKDEDAFFRDYAASHK 237 (287)
Q Consensus 207 ~L~~d~~t~~~V~~y--A~d~~~F~~~Fa~Am~ 237 (287)
.+++|.+||..|+.. |.|.++..+.|-.||.
T Consensus 34 kiLTdERTRRQvnnlRHATNSELLCEAFLHAfT 66 (103)
T cd00490 34 KILTDERTRRQVNNLRHATNSELLCEAFLHAFT 66 (103)
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHhc
Confidence 467899999999765 7899999999999985
No 34
>PF15102 TMEM154: TMEM154 protein family
Probab=23.22 E-value=30 Score=29.64 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=15.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhccC
Q 023103 261 AQGAVGVAVTVAVVILSYFYEVRKRMK 287 (287)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (287)
--.+|++.+.+.||+|.+.| .|||-|
T Consensus 63 IP~VLLvlLLl~vV~lv~~~-kRkr~K 88 (146)
T PF15102_consen 63 IPLVLLVLLLLSVVCLVIYY-KRKRTK 88 (146)
T ss_pred HHHHHHHHHHHHHHHheeEE-eecccC
Confidence 33355666666665555555 788765
No 35
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=22.67 E-value=54 Score=23.32 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=21.6
Q ss_pred HHHHhhh---hhhhhcCCCccccCCCCCCCCCCC
Q 023103 94 LYQLAGV---VAVEVTGGPTVDFVPGRKDSKISP 124 (287)
Q Consensus 94 iialAa~---~Av~~~GGP~~~v~~GR~D~~~s~ 124 (287)
+++||+. |-+..|.||.+++-.||--.+.|.
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqptpsD 42 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPTPSD 42 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCChhh
Confidence 4566665 345568999999999996554443
No 36
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=22.22 E-value=99 Score=26.60 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=20.0
Q ss_pred cChhHHHHHHHH--HHHHHHHHhCC
Q 023103 6 VDTEYLKEIDKA--RRDLRALIAYK 28 (287)
Q Consensus 6 ~~~~y~~~~~~~--~~~l~~~~~~~ 28 (287)
+|+|++++|+.+ ++||++++.+.
T Consensus 24 idp~~~eei~~A~TR~dIr~LIk~g 48 (150)
T COG2147 24 IDPNEIEEIASAITREDIRALIKDG 48 (150)
T ss_pred eChHHHHHHHHhhhHHHHHHHHHCC
Confidence 578999999986 89999999875
No 37
>PLN02438 inositol-3-phosphate synthase
Probab=21.96 E-value=4e+02 Score=27.46 Aligned_cols=115 Identities=18% Similarity=0.254 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCcCC---hhhhcc----CCCCchhHHHHHHHHHH
Q 023103 11 LKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRN---EEEYSH----GSNNGLKIALDFCEEVK 83 (287)
Q Consensus 11 ~~~~~~~~~~l~~~~~~~~~aa~llRl~FHDc~~~d~s~~~gG~dgSil~---~~E~~~----~~N~gl~~~~~~i~~ik 83 (287)
++.++++|+||+.|.+. .|+|--|++ ..|+-. +.|..+ -.++..++
T Consensus 203 ~e~ve~ir~DIr~Fk~~------------------------n~ld~vVVlwtAsTEr~~~~~~~~~~t~---~~l~~ai~ 255 (510)
T PLN02438 203 KEQMDQIRKDIREFKEK------------------------NKVDKVVVLWTANTERYSNVVVGLNDTM---ENLLASIE 255 (510)
T ss_pred HHHHHHHHHHHHHHHHH------------------------hCCCeEEEEECCCCCCCCcCCCcccCCH---HHHHHHHh
Confidence 67899999999998874 344443332 224322 334333 24556676
Q ss_pred hhCCCCcHHHHHHHhhhhhhhhcCCCccccCC--CCCCCCCCC-CCCCCCCCCCC--------hHHHHHHHHHcCCCccc
Q 023103 84 AKHPKITYADLYQLAGVVAVEVTGGPTVDFVP--GRKDSKISP-KEGRLPDAKRG--------APHLRDIFYRMGLSDKD 152 (287)
Q Consensus 84 ~~~p~VS~ADiialAa~~Av~~~GGP~~~v~~--GR~D~~~s~-~~~~lP~p~~~--------~~~l~~~F~~~Gft~~E 152 (287)
+.-+.||-+=+.|.|+.. .|-|.+...+ +..-+...- .+..+|-.-++ =..|.++|..+|+.+..
T Consensus 256 ~~~~eispS~~YA~AAl~----eG~~fVNgsP~~t~vP~~~elA~~~gvpi~GDD~KSGqT~~ksvLa~~l~~RGlkv~s 331 (510)
T PLN02438 256 KDEAEISPSTLYALACIL----EGVPFINGSPQNTFVPGVIELAVKKNSLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTS 331 (510)
T ss_pred cCCCcCChHHHHHHHHHH----cCCCeEecCCccccChhhHHHHHHcCCCEecccccCCCchhHHHHHHHHHHcCCceee
Confidence 655589999999888763 4555554433 321110000 12224422222 23477889999998877
Q ss_pred ceec
Q 023103 153 IVAL 156 (287)
Q Consensus 153 ~VaL 156 (287)
.+-+
T Consensus 332 ~~s~ 335 (510)
T PLN02438 332 IVSY 335 (510)
T ss_pred EEEE
Confidence 6654
No 38
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=21.92 E-value=88 Score=23.05 Aligned_cols=16 Identities=25% Similarity=0.121 Sum_probs=8.2
Q ss_pred hhhhHHHHHHHHHHHH
Q 023103 261 AQGAVGVAVTVAVVIL 276 (287)
Q Consensus 261 ~~~~~~~~~~~~~~~~ 276 (287)
.+.++|+++.+++.+|
T Consensus 3 ~g~l~Ga~~Ga~~glL 18 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLL 18 (74)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555554
No 39
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=20.16 E-value=1.7e+02 Score=18.91 Aligned_cols=20 Identities=30% Similarity=0.767 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 023103 262 QGAVGVAVTVAVVILSYFYE 281 (287)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~ 281 (287)
-|++++...+.+.||.+++-
T Consensus 6 ~Gal~vv~iLt~~ILvFWfg 25 (34)
T PF08113_consen 6 KGALGVVMILTAFILVFWFG 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeeHHHHHHHHHHHHHH
Confidence 46777777777888876553
Done!