Query 023104
Match_columns 287
No_of_seqs 247 out of 563
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 16:25:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 96.0 0.016 5.5E-07 45.5 6.5 57 172-247 7-63 (89)
2 1wmh_B Partitioning defective- 95.4 0.036 1.2E-06 43.5 6.6 69 172-258 7-76 (86)
3 2kkc_A Sequestosome-1; P62, PB 94.6 0.061 2.1E-06 43.2 6.0 61 171-248 5-80 (102)
4 2ktr_A Sequestosome-1; autopha 93.2 0.18 6.2E-06 41.5 6.4 62 170-248 19-95 (117)
5 1q1o_A Cell division control p 88.5 0.97 3.3E-05 36.1 6.1 75 171-258 5-86 (98)
6 1oey_A P67-PHOX, neutrophil cy 85.9 3.6 0.00012 31.8 7.8 70 172-262 6-78 (83)
7 1oey_J P40-PHOX, neutrophil cy 80.5 2.4 8E-05 34.5 5.0 41 188-248 28-68 (107)
8 2bkf_A Zinc-finger protein NBR 78.8 5.6 0.00019 31.2 6.5 55 172-246 7-61 (87)
9 1pqs_A Cell division control p 77.4 6.1 0.00021 29.9 6.2 60 186-258 5-65 (77)
10 1wj6_A KIAA0049 protein, RSGI 75.7 6.6 0.00022 31.6 6.2 65 172-258 15-79 (101)
11 1e8p_A Endoglucanase, dockerin 54.5 4 0.00014 28.6 0.9 14 232-245 20-33 (46)
12 3o27_A Putative uncharacterize 36.6 12 0.0004 28.2 1.1 18 228-245 42-59 (68)
13 2npt_A Dual specificity mitoge 29.7 64 0.0022 25.9 4.4 57 172-247 15-72 (106)
14 2j4m_A Endoglucanase 45A; dock 25.9 15 0.0005 29.5 0.1 13 232-244 21-33 (100)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=95.95 E-value=0.016 Score=45.48 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=43.6
Q ss_pred CceEEEecCcccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEccC
Q 023104 172 PFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGD 247 (287)
Q Consensus 172 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVGD 247 (287)
.=|||+..|.-+ .+.+...-+|++|...|.++|. .. ....+++.|.|.|||+.-+-.
T Consensus 7 vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~-----~~------------~~~~f~lky~DEeGD~itisS 63 (89)
T 1vd2_A 7 VRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCS-----FD------------NEQLFTMKWIDEEGDPCTVSS 63 (89)
T ss_dssp EEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTT-----CC------------SSCCEEEEECCSSSCCEECCS
T ss_pred EEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhC-----CC------------CCCeEEEEEECCCCCcccccC
Confidence 578889999744 4444456799999999999994 11 235799999999999976543
No 2
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=95.44 E-value=0.036 Score=43.49 Aligned_cols=69 Identities=17% Similarity=0.139 Sum_probs=50.3
Q ss_pred CceEEEecCcccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEccCC-Ch
Q 023104 172 PFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDV-PW 250 (287)
Q Consensus 172 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVGDv-PW 250 (287)
.-||...|..--=-.||-....+|++|+.-|+++|. + ...+|++.|.|.|||++-+=+. =.
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~-----L-------------~~~~f~i~Y~D~dGDLlpInnDdnl 68 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQ-----I-------------PGLDVLLGYTDAHGDLLPLTNDDSL 68 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTT-----C-------------TTCCCEEEEECTTSCEEECCSHHHH
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcC-----C-------------CCCCEEEEEECCCCCEeeecCHHHH
Confidence 468888888643335565677899999999999994 1 1247999999999999988755 33
Q ss_pred HHHhhccc
Q 023104 251 GMFLGSVK 258 (287)
Q Consensus 251 ~mFv~svK 258 (287)
.+=+.++|
T Consensus 69 ~~Al~~a~ 76 (86)
T 1wmh_B 69 HRALASGP 76 (86)
T ss_dssp HHHTTSSS
T ss_pred HHHHHhCC
Confidence 33344555
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=94.65 E-value=0.061 Score=43.15 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=44.4
Q ss_pred CCceEEEecCc----ccceeeecCC-----------CCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEE
Q 023104 171 SPFVKVNMDGI----PIGRKIDLNA-----------HGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTY 235 (287)
Q Consensus 171 ~~~VKV~MdG~----pigRKVDL~~-----------~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltY 235 (287)
+.-||++..|. .-=|++-|.. ..+|++|...++++|.. . .+..|++.|
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~----l-------------~~~~f~l~Y 67 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA----L-------------RPGGFQAHY 67 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT----S-------------CSSCEEEEE
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc----c-------------CCCcEEEEE
Confidence 35788888752 2346655532 24899999999999951 1 124799999
Q ss_pred EeCCCCeEEccCC
Q 023104 236 EDKEGDWMLVGDV 248 (287)
Q Consensus 236 eDkeGDwMLVGDv 248 (287)
.|.|||+.-+-+.
T Consensus 68 ~DedGDlItiSsD 80 (102)
T 2kkc_A 68 RAERGDLVAFSSD 80 (102)
T ss_dssp ECTTCCEEEECSH
T ss_pred ECCCCCEEEecCH
Confidence 9999999887755
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=93.25 E-value=0.18 Score=41.47 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=44.9
Q ss_pred CCCceEEEecCc----ccceeeecC-----------CCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEE
Q 023104 170 TSPFVKVNMDGI----PIGRKIDLN-----------AHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLT 234 (287)
Q Consensus 170 ~~~~VKV~MdG~----pigRKVDL~-----------~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvlt 234 (287)
.+.-||++..|. .==|++=|. .-.+|++|...+.++|.. . .+..|+|.
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~----L-------------~~~~f~l~ 81 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA----L-------------RPGGFQAH 81 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT----S-------------CSSCEEEE
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc----c-------------CCCcEEEE
Confidence 357899999751 223655554 135999999999999941 1 12479999
Q ss_pred EEeCCCCeEEccCC
Q 023104 235 YEDKEGDWMLVGDV 248 (287)
Q Consensus 235 YeDkeGDwMLVGDv 248 (287)
|.|.|||+.-+-..
T Consensus 82 YkDEdGDlItISsD 95 (117)
T 2ktr_A 82 YRAERGDLVAFSSD 95 (117)
T ss_dssp EECTTCCEEEECSH
T ss_pred EECCCCCEEEecCH
Confidence 99999999877654
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=88.53 E-value=0.97 Score=36.09 Aligned_cols=75 Identities=11% Similarity=0.262 Sum_probs=52.9
Q ss_pred CCceEEEecCc------ccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEE
Q 023104 171 SPFVKVNMDGI------PIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWML 244 (287)
Q Consensus 171 ~~~VKV~MdG~------pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwML 244 (287)
+.-|||+-+.. .=.|.|=+..--+|++|...+.+-|..+ .+.+. .....|-|+|.|||+..
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~----~~~~i---------~~~~klkYkDEdGD~Vt 71 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT----HNNNI---------SPITKIKYQDEDGDFVV 71 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH----CSSCC---------CCCCCEEEECSSSCEEE
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC----ccccc---------cceeEEEEEcCCCCEEE
Confidence 35678887742 1236676778889999999999999521 11110 13467999999999988
Q ss_pred ccC-CChHHHhhccc
Q 023104 245 VGD-VPWGMFLGSVK 258 (287)
Q Consensus 245 VGD-vPW~mFv~svK 258 (287)
+++ .=|+|-+.+++
T Consensus 72 l~sddDl~~A~e~~~ 86 (98)
T 1q1o_A 72 LGSDEDWNVAKEMLA 86 (98)
T ss_dssp ECSHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHH
Confidence 775 57998888763
No 6
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=85.87 E-value=3.6 Score=31.75 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=54.8
Q ss_pred CceEEEecCcccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEe-CCCCeEEccCCCh
Q 023104 172 PFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYED-KEGDWMLVGDVPW 250 (287)
Q Consensus 172 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeD-keGDwMLVGDvPW 250 (287)
.=|||+-. +.-.|....=-+|.+|...|.+=+. .++ .+-+|-|.| .+|.|++.+|.=|
T Consensus 6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~-----l~~-------------~~~~LsYk~~~s~~~vi~~d~dl 64 (83)
T 1oey_A 6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLE-----LRL-------------EHTKLSYRPRDSNELVPLSEDSM 64 (83)
T ss_dssp EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTT-----CCG-------------GGCCEEECCTTCSSCEECCTTTH
T ss_pred EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhC-----CCc-------------ceeEEEeeCCCCCCeeccChHHH
Confidence 35677766 7788888888999999999999994 332 123488999 6889999999999
Q ss_pred HHHhhccc--eeEE
Q 023104 251 GMFLGSVK--RLRI 262 (287)
Q Consensus 251 ~mFv~svK--RLrI 262 (287)
+.-...++ ||++
T Consensus 65 ~~aw~~~~n~~LtL 78 (83)
T 1oey_A 65 KDAWGQVKNYCLTL 78 (83)
T ss_dssp HHHHTTCBTTEEEE
T ss_pred HHHHHhccCCcEEE
Confidence 98888755 6665
No 7
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=80.53 E-value=2.4 Score=34.48 Aligned_cols=41 Identities=27% Similarity=0.407 Sum_probs=33.0
Q ss_pred ecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEccCC
Q 023104 188 DLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDV 248 (287)
Q Consensus 188 DL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVGDv 248 (287)
||..--.|.+|..-..+-|. ..+-+|-|.|.|||+.-+=|.
T Consensus 28 dl~~~P~ykdLl~lmr~~F~--------------------~~DIaLNYrD~eGDLIrildd 68 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQ--------------------REDIALNYRDAEGDLVRLLSD 68 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHC--------------------CSSEEEEEECTTSCEEECCSH
T ss_pred ccccCCCHHHHHHHHHHHhc--------------------ccceeeeeecCCCCEEEEcch
Confidence 67777899999999999994 125679999999999765443
No 8
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=78.84 E-value=5.6 Score=31.16 Aligned_cols=55 Identities=9% Similarity=0.110 Sum_probs=41.9
Q ss_pred CceEEEecCcccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEcc
Q 023104 172 PFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVG 246 (287)
Q Consensus 172 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVG 246 (287)
.-+||.-.|...=--|.-..--++++|...|..+|. + ..++|.|.|.|||-.-|=
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~-----L---------------~~~~ikY~DEenD~v~i~ 61 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD-----L---------------NTIQIKYLDEENEEVSIN 61 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHT-----C---------------SSEEEEEECTTSCEEEEC
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcC-----C---------------CceEEEEEcCCCCEEEEe
Confidence 357889999754334544447799999999999993 1 368999999999987663
No 9
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=77.37 E-value=6.1 Score=29.91 Aligned_cols=60 Identities=13% Similarity=0.351 Sum_probs=42.2
Q ss_pred eeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEcc-CCChHHHhhccc
Q 023104 186 KIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVG-DVPWGMFLGSVK 258 (287)
Q Consensus 186 KVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVG-DvPW~mFv~svK 258 (287)
.|=...--+|++|...+.+-|..+. ..+ -.....|-|+|.|||+...+ |.=|+|=+.++|
T Consensus 5 ~i~V~~~i~f~~L~~kI~~kl~~~~--~~~-----------~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~ 65 (77)
T 1pqs_A 5 TLLVEKVWNFDDLIMAINSKISNTH--NNN-----------ISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA 65 (77)
T ss_dssp EEECTTCCCSHHHHHHHHHHTTTTT--SSC-----------SCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHcccc--ccc-----------ccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence 3334555689999999999995320 000 02456799999999998776 557998888763
No 10
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=75.73 E-value=6.6 Score=31.59 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=48.7
Q ss_pred CceEEEecCcccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEccCCChH
Q 023104 172 PFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDVPWG 251 (287)
Q Consensus 172 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVGDvPW~ 251 (287)
.-+||...|...=--|.-..--++++|...|..+|. + ..++|.|.|.|||-.-| .-+.
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~-----L---------------~~~~IkY~DEenD~V~i--~Sq~ 72 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD-----L---------------NTIQIKYLDEENEEVSI--NSQG 72 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHC-----C---------------SSBCCEEECTTSCEECC--CSHH
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcC-----C---------------CceEEEEecCCCCEEEE--ecHH
Confidence 468999999864444644457799999999999993 1 25789999999999877 3466
Q ss_pred HHhhccc
Q 023104 252 MFLGSVK 258 (287)
Q Consensus 252 mFv~svK 258 (287)
+|-+.+|
T Consensus 73 E~eEAlk 79 (101)
T 1wj6_A 73 EYEEALK 79 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655444
No 11
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=54.53 E-value=4 Score=28.62 Aligned_cols=14 Identities=29% Similarity=0.731 Sum_probs=11.6
Q ss_pred EEEEEeCCCCeEEc
Q 023104 232 VLTYEDKEGDWMLV 245 (287)
Q Consensus 232 vltYeDkeGDwMLV 245 (287)
.++|+|.||||=.-
T Consensus 20 ~V~YtD~dG~WGVe 33 (46)
T 1e8p_A 20 KVEYTDASGQWGVQ 33 (46)
T ss_dssp CEEEEETTEEEEEE
T ss_pred eEEEEcCCCccccC
Confidence 48899999999653
No 12
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=36.57 E-value=12 Score=28.19 Aligned_cols=18 Identities=33% Similarity=0.695 Sum_probs=15.6
Q ss_pred CCCeEEEEEeCCCCeEEc
Q 023104 228 TSDYVLTYEDKEGDWMLV 245 (287)
Q Consensus 228 ~seyvltYeDkeGDwMLV 245 (287)
+-+|.++++|++|+.+|+
T Consensus 42 gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 42 DDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp TCCEEEEEEEETTEEEEE
T ss_pred CCEEEEEEecCCCeEEEE
Confidence 358999999999999885
No 13
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=29.70 E-value=64 Score=25.86 Aligned_cols=57 Identities=12% Similarity=0.346 Sum_probs=39.8
Q ss_pred CceEEEec-CcccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEccC
Q 023104 172 PFVKVNMD-GIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGD 247 (287)
Q Consensus 172 ~~VKV~Md-G~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVGD 247 (287)
.-+.+... |..+--.||-..+=+|.+|..++.+..-.-| --..-|||.+||++-|--
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT-------------------~TAFeYEDE~gDRITVRS 72 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEAT-------------------TTAFEYEDEDGDRITVRS 72 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSC-------------------CSEEEEECTTSCEEEECS
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccce-------------------eeeeeeccccCCeeEEcc
Confidence 34555554 6667788887778899999999999884211 122669999999988753
No 14
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=25.93 E-value=15 Score=29.53 Aligned_cols=13 Identities=31% Similarity=0.825 Sum_probs=11.2
Q ss_pred EEEEEeCCCCeEE
Q 023104 232 VLTYEDKEGDWML 244 (287)
Q Consensus 232 vltYeDkeGDwML 244 (287)
.|+|.|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 4889999999965
Done!