BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023105
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6AWY4|GRF5_ORYSJ Growth-regulating factor 5 OS=Oryza sativa subsp. japonica GN=GRF5
PE=2 SV=1
Length = 348
Score = 184 bits (466), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 129/330 (39%), Positives = 162/330 (49%), Gaps = 82/330 (24%)
Query: 16 FTASQWQELEHQALIFKYMVSGIPVPPDLLFTIK------RSYYFDRSPPSAAKHFTHQH 69
FTA+QW ELE QALI+KY+V+G+PVP DLL I+ +Y F AA F H H
Sbjct: 25 FTAAQWAELEQQALIYKYLVAGVPVPGDLLLPIRPHSSAAATYSFANP---AAAPFYHHH 81
Query: 70 QHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 129
H + + G+K+DPEP RCRRTDGKKWRCSKEA+PDSKYCERHMHRG+NRSRKPVE
Sbjct: 82 HHPSLSYYAY-YGKKLDPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVE 140
Query: 130 LNTS-------------------------TCTANKSSSAL------------------SR 146
T+ + T + L S+
Sbjct: 141 SKTAAPAPQSQPQLSNVTTATHDTDAPLPSLTVGAKTHGLSLGGAGSSQFHVDAPSYGSK 200
Query: 147 YVYGPKEEVDEHAFFSEPSGKVRSFSAVS-MDDSWQLTPLTMSSSCSSSSSKQRSFSGLQ 205
Y G K +V E +FFS SG R F+ S D SW P SS SK R L
Sbjct: 201 YSLGAKADVGELSFFSGASGNTRGFTIDSPTDSSWHSLP---SSVPPYPMSKPRDSGLLP 257
Query: 206 SDYS--------DLQLKSCADNTPKQQDK-------------QPEEIPQKTVHRFFDEWP 244
YS +L + A + +Q+ + + E P + FFDEWP
Sbjct: 258 GAYSYSHLEPSQELGQVTIASLSQEQERRSFGGGAGGMLGNVKHENQPLRP---FFDEWP 314
Query: 245 PKSRDSWLDLDDKSSKNASLSTASLSISIP 274
+ RDSW ++D++ S S ST LSISIP
Sbjct: 315 GR-RDSWSEMDEERSNQTSFSTTQLSISIP 343
>sp|Q8L8A6|GRF5_ARATH Growth-regulating factor 5 OS=Arabidopsis thaliana GN=GRF5 PE=1
SV=1
Length = 397
Score = 176 bits (447), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/122 (65%), Positives = 97/122 (79%), Gaps = 6/122 (4%)
Query: 10 AINRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQH 69
I R PFT +QW+ELEHQALI+KYMVSG+PVPP+L+F+I+RS D S S H
Sbjct: 11 TIGRPPFTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRRS--LDTSLVSRLL----PH 64
Query: 70 QHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 129
Q + W C+Q+G GRK DPEPGRCRRTDGKKWRCS+EAYPDSKYCE+HMHRG+NR+RK ++
Sbjct: 65 QSLGWGCYQMGFGRKPDPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLD 124
Query: 130 LN 131
N
Sbjct: 125 QN 126
>sp|Q6AWY8|GRF1_ORYSJ Growth-regulating factor 1 OS=Oryza sativa subsp. japonica GN=GRF1
PE=3 SV=1
Length = 397
Score = 174 bits (440), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 78/119 (65%), Positives = 93/119 (78%), Gaps = 1/119 (0%)
Query: 14 FPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVE 73
+PFTASQWQELEHQALI+KYM SG P+P DL+ ++RS+ D + ++ +
Sbjct: 17 YPFTASQWQELEHQALIYKYMASGTPIPSDLILPLRRSFLLDSALATSPSLAFPPQPSLG 76
Query: 74 WNCFQVGLGRKI-DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELN 131
W CF +G GRK DPEPGRCRRTDGKKWRCSKEAYPDSKYCE+HMHRGKNRSRKPVE++
Sbjct: 77 WGCFGMGFGRKAEDPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVEMS 135
Score = 35.8 bits (81), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 69/174 (39%), Gaps = 52/174 (29%)
Query: 147 YVYG--PKEEVDEHAFFSEPSGKVRSFSAVSMDDSWQLTPLTMSSSCSSSSSKQRSFSGL 204
Y YG KE EHAFFS+ + + +A WQ L M S++ F G
Sbjct: 233 YAYGHATKEVHGEHAFFSDGTEREHHHAAAG-HGQWQFKQLGMEPKQSTTPL----FPG- 286
Query: 205 QSDYSDLQLKSCADNTPKQQDKQPE----------------------EIP---------Q 233
+ Y A + K+ D + E E P Q
Sbjct: 287 -AGYGHTAASPYAIDLSKEDDDEKERRQQQQQQQQQHCFLLGADLRLEKPAGHDHAAAAQ 345
Query: 234 KTVHRFFDEWPPK--SRDSWLDLDDKSSKNASLSTASLSISIP-SSHDFPIFSS 284
K + FFDEWP + S+ SW+ L+ ++ LS+SIP +++D PI ++
Sbjct: 346 KPLRHFFDEWPHEKNSKGSWMGLEGET---------QLSMSIPMAANDLPITTT 390
>sp|A2XA73|GRF1_ORYSI Growth-regulating factor 1 OS=Oryza sativa subsp. indica GN=GRF1
PE=2 SV=1
Length = 396
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/118 (66%), Positives = 92/118 (77%), Gaps = 1/118 (0%)
Query: 14 FPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVE 73
+PFTASQWQELEHQALI+KYM SG P+P DL+ ++RS+ D + ++ +
Sbjct: 17 YPFTASQWQELEHQALIYKYMASGTPIPSDLILPLRRSFLLDSALATSPSLAFPPQPSLG 76
Query: 74 WNCFQVGLGRKI-DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEL 130
W CF +G GRK DPEPGRCRRTDGKKWRCSKEAYPDSKYCE+HMHRGKNRSRKPVE+
Sbjct: 77 WGCFGMGFGRKAEDPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVEM 134
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 51/173 (29%)
Query: 147 YVYG--PKEEVDEHAFFSEPSGKVRSFSAVSMDDSWQLTPLTMSSSCSSSSSKQRSFSGL 204
Y YG KE EHAFFS+ + + +A WQ L M S++ F G
Sbjct: 233 YAYGHATKEVHGEHAFFSDGTEREHHHAAAG-HGQWQFKQLGMEPKQSTTPL----FPG- 286
Query: 205 QSDYSDLQLKSCADNTPKQQDKQPE---------------------EIP---------QK 234
+ Y A + K+ D + E E P QK
Sbjct: 287 -AGYGHTAASPYAIDLSKEDDDEKERRQQQQQQQQHCFLLGADLRLEKPAGHDHAAAAQK 345
Query: 235 TVHRFFDEWPPK--SRDSWLDLDDKSSKNASLSTASLSISIP-SSHDFPIFSS 284
+ FFDEWP + S+ SW+ L+ ++ LS+SIP +++D PI ++
Sbjct: 346 PLRHFFDEWPHEKNSKGSWMGLEGET---------QLSMSIPMAANDLPITTT 389
>sp|Q9ZQ12|GRF6_ARATH Growth-regulating factor 6 OS=Arabidopsis thaliana GN=GRF6 PE=2
SV=2
Length = 244
Score = 171 bits (433), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 110/252 (43%), Positives = 141/252 (55%), Gaps = 43/252 (17%)
Query: 13 RFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSP----------PSAA 62
R PFT SQW+ELE+QAL+FKY+ + +PVPP LLF IKR + F S P+ +
Sbjct: 4 RIPFTESQWEELENQALVFKYLAANMPVPPHLLFLIKRPFLFSSSSSSSSSSSFFSPTLS 63
Query: 63 KHFTHQHQHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKN 122
HF WN +++G+GRKID EPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKN
Sbjct: 64 PHFG-------WNVYEMGMGRKIDAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKN 116
Query: 123 R--SRK--PVELNTSTCTANKSSSALSRYVYGPKEEVDEHAFFS-EPSGKVRSFSAVSMD 177
R SRK P + + + S S Y+ FFS EPSG ++S S +M+
Sbjct: 117 RSSSRKPPPTQFTPNLFLDSSSRRRRSGYM---------DDFFSIEPSGSIKSCSGSAME 167
Query: 178 DSWQLTPLTMSSSCSSSSSKQ----RSFSGLQSDYSDLQLKSCADNTPKQQD-KQPEEIP 232
D+ SC ++++ R L +D + + KQ+D EE
Sbjct: 168 DN-------DDGSCRGINNEEKQPDRHCFILGTDLRTRERPLMLEEKLKQRDHDNEEEQG 220
Query: 233 QKTVHRFFDEWP 244
K +RF DEWP
Sbjct: 221 SKRFYRFLDEWP 232
>sp|Q6AWY7|GRF2_ORYSJ Growth-regulating factor 2 OS=Oryza sativa subsp. japonica GN=GRF2
PE=3 SV=1
Length = 301
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 140/289 (48%), Gaps = 46/289 (15%)
Query: 12 NRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYY------FDRSPPSAAKHF 65
R FTA+QWQELEHQALI+KYM +G PVPPDLL ++ D P
Sbjct: 8 GRCLFTATQWQELEHQALIYKYMAAGAPVPPDLLLHLRHRAAAAAAADVDTVP-----SL 62
Query: 66 THQHQHVEWNCFQVG---LGRKI-DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGK 121
H+ W C+ GR++ DPEPGRCRRTDGKKWRCS+EAY +SKYCE+HMHRGK
Sbjct: 63 AFPPHHLGWGCYGAAAAQYGRRVEDPEPGRCRRTDGKKWRCSREAYGESKYCEKHMHRGK 122
Query: 122 NRSRKPVELNTSTCTANKSSSALSRYVYGPKEEVDEHAFFSEPSGKVR------------ 169
NRSRKPVE+ A SALS + P + D ++ + ++
Sbjct: 123 NRSRKPVEMPPPAAAAVYRPSALS--ISPPPHDADAPSYGAGAGAPLQLHLDSFHASTSP 180
Query: 170 --SFSAVSMDDSWQLTPLTMSSSCSSSSSKQRSFSGLQSDYSDLQLKSCADNTPKQQDKQ 227
S+ + S L P + + S + L +DL L AD+
Sbjct: 181 PPSYHRYAHTSSAPLFPSSAAGYGGGWSLSKEHCLTLGGAAADLSLDKPADH----HHDA 236
Query: 228 PEEIPQKTVHRFFDEWPPKSRDSWLDLDDKSSKNASLSTASLSISIPSS 276
+K + RFFDEW P+S D D LSISIP++
Sbjct: 237 TSATTEKPLRRFFDEW-PRSDDGRTPWDGT----------QLSISIPTA 274
>sp|Q6ZIK5|GRF4_ORYSJ Growth-regulating factor 4 OS=Oryza sativa subsp. japonica GN=GRF4
PE=2 SV=1
Length = 394
Score = 155 bits (392), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 71/114 (62%), Positives = 87/114 (76%), Gaps = 10/114 (8%)
Query: 16 FTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVEWN 75
FTA+Q++ELE QALI+KY+V+G+PVPPDL+ I+R S A F + H + +
Sbjct: 65 FTAAQYEELEQQALIYKYLVAGVPVPPDLVLPIRRGL------DSLAARF-YNHPALGYG 117
Query: 76 CFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 129
+ G+K+DPEPGRCRRTDGKKWRCSKEA PDSKYCERHMHRG+NRSRKPVE
Sbjct: 118 PY---FGKKLDPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVE 168
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 146 RY-VYGPKEEVDEHAFFSEPSGKVRSFSAVSMDDSWQLTPLTMSSSCSSSSSKQRSFSGL 204
RY YG + DE S + S+++ W+L P S SS S+ + S L
Sbjct: 251 RYTAYGTRSLADEQ------SQLITEAINTSIENPWRLLPSQNSPFPLSSYSQLGALSDL 304
Query: 205 Q----SDYSDLQLKSCA--DNTPKQQDKQPEEIPQKTVHRFFDEWPPKSRDSWLDLDDKS 258
S S +Q + + N D +E +T+ FFDEWP K RDSW DL D++
Sbjct: 305 GQNTPSSLSKVQRQPLSFFGNDYAAVDSVKQE--NQTLRPFFDEWP-KGRDSWSDLADEN 361
Query: 259 SKNASLSTASLSISIP 274
+ +S S LSISIP
Sbjct: 362 ANLSSFSGTQLSISIP 377
>sp|Q6AWY6|GRF3_ORYSJ Growth-regulating factor 3 OS=Oryza sativa subsp. japonica GN=GRF3
PE=3 SV=2
Length = 387
Score = 155 bits (391), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/115 (63%), Positives = 87/115 (75%), Gaps = 10/115 (8%)
Query: 15 PFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVEW 74
PFTA+Q++ELE QALI+KY+V+G+PVP DLL I+R S A F H H + +
Sbjct: 53 PFTAAQYEELEQQALIYKYLVAGVPVPADLLLPIRRGL------DSLASRFYH-HPVLGY 105
Query: 75 NCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 129
+ G+K+DPEPGRCRRTDGKKWRCSKEA PDSKYCERHMHRG+NRSRKPVE
Sbjct: 106 GSY---FGKKLDPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVE 157
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 75/174 (43%), Gaps = 43/174 (24%)
Query: 133 STCTANKSSSALSRYVYGPKEEVDEHAFFSEPSGKVRSFSAVSMDDSWQLTP-------- 184
ST A + YG + DEH S + S+D+SW L P
Sbjct: 230 STVAAGAGNKDFRYSAYGVRPLADEH------SPLITGAMDTSIDNSWCLLPSQTSTFSV 283
Query: 185 -----------LTMSSSCSSSSSKQRSFSGLQSDYSDLQLKSCADNTPKQQDKQPEEIPQ 233
L ++ CS ++ S SDY + ++ KQ+++
Sbjct: 284 SSYPMLGNLSELDQNTICSLPKVEREPLSFFGSDYVTV-------DSGKQENQ------- 329
Query: 234 KTVHRFFDEWPPKSRDSWLDLDDKSSKNASLSTASLSISIP-SSHDFPIFSSRA 286
T+ FFDEWP K+RDSW DL D +S A+ S LSISIP ++ DF SSR+
Sbjct: 330 -TLRPFFDEWP-KARDSWPDLADDNSL-ATFSATQLSISIPMATSDFSTTSSRS 380
>sp|Q8L8A8|GRF2_ARATH Growth-regulating factor 2 OS=Arabidopsis thaliana GN=GRF2 PE=1
SV=1
Length = 535
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/143 (50%), Positives = 99/143 (69%), Gaps = 15/143 (10%)
Query: 15 PFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYY-FDRSPPSAAKHFTHQHQHVE 73
PFT +QW ELE QALI+KY+ + +PVP LL +IK+S+Y + PPS+
Sbjct: 164 PFTLTQWAELEQQALIYKYITANVPVPSSLLISIKKSFYPYGSLPPSS----------FG 213
Query: 74 WNCFQVGL-GRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELNT 132
W F +G G +DPEPGRCRRTDGKKWRCS++A PD KYCERH++RG++RSRKPVE+ +
Sbjct: 214 WGTFHLGFAGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEVQS 273
Query: 133 STCTANKSSSALSRYVYGPKEEV 155
N++++A S+ V P++ V
Sbjct: 274 G---QNQTAAAASKAVTTPQQPV 293
>sp|Q6AWY3|GRF6_ORYSJ Growth-regulating factor 6 OS=Oryza sativa subsp. japonica GN=GRF6
PE=2 SV=2
Length = 603
Score = 137 bits (345), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 79/117 (67%), Gaps = 6/117 (5%)
Query: 13 RFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHV 72
R PFT SQW ELEHQALI+KY+ + PVP LL I+RS SP +F +
Sbjct: 156 RGPFTPSQWIELEHQALIYKYLAANSPVPHSLLIPIRRSLTSPYSP----AYFGSST--L 209
Query: 73 EWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 129
W FQ+G DPEPGRCRRTDGKKWRCS++A D KYCERHM+RG++RSRK VE
Sbjct: 210 GWGSFQLGYSGSADPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVE 266
>sp|Q6AWY2|GRF7_ORYSJ Growth-regulating factor 7 OS=Oryza sativa subsp. japonica GN=GRF7
PE=2 SV=2
Length = 411
Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 13 RFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHV 72
R PFT +QW ELEHQALI+K++V+ PVP LL I+RS + P HF+
Sbjct: 36 RGPFTPTQWMELEHQALIYKHIVANAPVPAGLLLPIRRSLH-----PPVFPHFSSGGILG 90
Query: 73 E----WNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPV 128
W FQ+G D EPGRCRRTDGKKWRCS++A D KYCERH++RG++RSRK V
Sbjct: 91 SSSLGWGSFQLGYSGSADSEPGRCRRTDGKKWRCSRDAVVDQKYCERHINRGRHRSRKHV 150
Query: 129 ELNTS 133
E +S
Sbjct: 151 EGQSS 155
>sp|Q9SJR5|GRF3_ARATH Growth-regulating factor 3 OS=Arabidopsis thaliana GN=GRF3 PE=2
SV=1
Length = 398
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/128 (54%), Positives = 85/128 (66%), Gaps = 10/128 (7%)
Query: 13 RFP-----FTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTH 67
RFP F+ +QWQELE QALI++YM++G VP +LL IK+S PS H H
Sbjct: 69 RFPKMGSFFSWAQWQELELQALIYRYMLAGAAVPQELLLPIKKSLL--HLSPSYFLH--H 124
Query: 68 QHQHVEWNCFQVGLGRK-IDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRK 126
QH+ LGR +DPEPGRCRRTDGKKWRCS++ + KYCERHMHRG+NRSRK
Sbjct: 125 PLQHLPHYQPAWYLGRAAMDPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNRSRK 184
Query: 127 PVELNTST 134
PVE T+
Sbjct: 185 PVETPTTV 192
>sp|O81001|GRF1_ARATH Growth-regulating factor 1 OS=Arabidopsis thaliana GN=GRF1 PE=1
SV=1
Length = 530
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/119 (52%), Positives = 85/119 (71%), Gaps = 12/119 (10%)
Query: 13 RFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYY-FDRSPPSAAKHFTHQHQH 71
+ PF+ +QW ELE QALI+KY+ + +PVP LL ++K+S++ + PP++
Sbjct: 131 KGPFSLTQWAELEQQALIYKYITANVPVPSSLLLSLKKSFFPYGSLPPNS---------- 180
Query: 72 VEWNCFQVGL-GRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 129
W F +G G +DPEPGRCRRTDGKKWRCS++A PD KYCERH++RG++RSRKPVE
Sbjct: 181 FGWGSFHLGFSGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 239
>sp|Q8L8A7|GRF4_ARATH Growth-regulating factor 4 OS=Arabidopsis thaliana GN=GRF4 PE=2
SV=1
Length = 380
Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 79/121 (65%), Gaps = 16/121 (13%)
Query: 16 FTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQ------- 68
F+ +QWQELE QALI++YM++G VP +LL IK+S +SP HF H
Sbjct: 83 FSWAQWQELELQALIYRYMLAGASVPQELLLPIKKSL-LHQSP----MHFLHHPLQHSFP 137
Query: 69 HQHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPV 128
H W G G +DPEPGRC+RTDGKKWRCS++ KYC+RH+HRG+NRSRKPV
Sbjct: 138 HHQPSWYW---GRG-AMDPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNRSRKPV 193
Query: 129 E 129
E
Sbjct: 194 E 194
>sp|Q6AWY1|GRF8_ORYSJ Growth-regulating factor 8 OS=Oryza sativa subsp. japonica GN=GRF8
PE=2 SV=1
Length = 409
Score = 117 bits (294), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 81/136 (59%), Gaps = 20/136 (14%)
Query: 13 RFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHV 72
R PFT +QW ELEHQALI+K++ + + VP LL I+RS + P
Sbjct: 105 RGPFTPTQWMELEHQALIYKHIAANVSVPSSLLLPIRRSLH-----PWG----------- 148
Query: 73 EWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELNT 132
W F G D EP RCRRTDGKKWRCS++A D KYCERH++RG++RSRK VE
Sbjct: 149 -WGSFPPGCA---DVEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVEGRK 204
Query: 133 STCTANKSSSALSRYV 148
+T T + S+ ++ V
Sbjct: 205 ATLTIAEPSTVIAAGV 220
>sp|Q9FRG8|GRF9_ORYSJ Growth-regulating factor 9 OS=Oryza sativa subsp. japonica GN=GRF9
PE=2 SV=1
Length = 426
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 69/116 (59%), Gaps = 14/116 (12%)
Query: 15 PFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVEW 74
PFT SQW ELEHQALI+KY+ + P+P S +K F + W
Sbjct: 92 PFTPSQWMELEHQALIYKYLNAKAPIP-------------SSLLISISKSFRSSANRMSW 138
Query: 75 NCFQVGL-GRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 129
G DPEPGRCRRTDGKKWRCSKEA D KYCERH++R ++RSRKPVE
Sbjct: 139 RPLYQGFPNADSDPEPGRCRRTDGKKWRCSKEAMADHKYCERHINRNRHRSRKPVE 194
>sp|Q6EPP9|GRF10_ORYSJ Growth-regulating factor 10 OS=Oryza sativa subsp. japonica
GN=GRF10 PE=2 SV=1
Length = 211
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 81/151 (53%), Gaps = 20/151 (13%)
Query: 16 FTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVEWN 75
T Q QELEHQ LI++Y +G PVP L+ I +S A+ F H +
Sbjct: 69 LTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSV--------ASSSFG---PHRFPS 117
Query: 76 CFQVGLGR-------KIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPV 128
+GLG ++P+PGRCRRTDGKKWRCS++ P KYCERH+HRG+ RSRKPV
Sbjct: 118 LAVMGLGNLCFDYRSSMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPV 177
Query: 129 ELNTSTCTANKSSSALSRYVYGPKEEVDEHA 159
E + + AN V+ P + H
Sbjct: 178 EASAAATPANNGGGG--GIVFSPTSVLLAHG 206
>sp|Q9FJB8|GRF7_ARATH Growth-regulating factor 7 OS=Arabidopsis thaliana GN=GRF7 PE=2
SV=1
Length = 365
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 75/126 (59%), Gaps = 23/126 (18%)
Query: 4 GNHNMSAINRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAK 63
GN + +PFT +Q +ELE QA+I+KYM++ IPVP DLL + SP SA+
Sbjct: 48 GNGLLGCYYYYPFTNAQLKELERQAMIYKYMIASIPVPFDLLVS---------SPSSASP 98
Query: 64 HFTHQHQHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNR 123
C + D EPGRCRRTDGKKWRC+KE + KYCE+H+HRG+ R
Sbjct: 99 ------------CNNKNIAG--DLEPGRCRRTDGKKWRCAKEVVSNHKYCEKHLHRGRPR 144
Query: 124 SRKPVE 129
SRK VE
Sbjct: 145 SRKHVE 150
>sp|Q6AWX7|GRF12_ORYSJ Growth-regulating factor 12 OS=Oryza sativa subsp. japonica
GN=GRF12 PE=2 SV=1
Length = 236
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 72/123 (58%), Gaps = 13/123 (10%)
Query: 16 FTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQH----QH 71
T Q QELE Q LI++Y +G PVP L+ I +S +AA F Q
Sbjct: 75 LTFMQRQELEQQVLIYRYFAAGAPVPVHLVLPIWKSI-------AAASSFGPQSFPSLTG 127
Query: 72 VEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELN 131
+ CF ++PEPGRCRRTDGKKWRCS++ P KYCERH+HRG+ RSRKP+E +
Sbjct: 128 LGSLCFD--YRSSMEPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPMEAS 185
Query: 132 TST 134
+
Sbjct: 186 AAV 188
>sp|Q6AWX8|GRF11_ORYSJ Growth-regulating factor 11 OS=Oryza sativa subsp. japonica
GN=GRF11 PE=2 SV=1
Length = 269
Score = 104 bits (259), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 71/115 (61%), Gaps = 8/115 (6%)
Query: 16 FTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVEWN 75
FTA Q QELE Q+ +++YM + +PVP L+F I +S S A K+ T +
Sbjct: 115 FTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWKSVT-GASSEGAQKYPTL----MGLA 169
Query: 76 CFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEL 130
+ G+ +PEPGRCRRTDGKKWRC + A + KYCERHMHRG+ R PV+L
Sbjct: 170 TLCLDFGKNPEPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKR---PVQL 221
>sp|Q9SU44|GRF8_ARATH Growth-regulating factor 8 OS=Arabidopsis thaliana GN=GRF8 PE=2
SV=1
Length = 493
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 68/137 (49%), Gaps = 23/137 (16%)
Query: 16 FTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKR------------------SYYFDRS 57
F+ +QW ELE Q I+KYM++ +PVPP+LL + S Y D
Sbjct: 150 FSEAQWHELERQRNIYKYMMASVPVPPELLTPFPKNHQSNTNPDVDTYRSGMFSIYADYK 209
Query: 58 PPSAAKHFTHQHQHVEWNCFQVGLG-----RKIDPEPGRCRRTDGKKWRCSKEAYPDSKY 112
+ T Q+G+ D EP RC+RTDGKKWRCS+ PD KY
Sbjct: 210 NLPLSMWMTVTVAVATGGSLQLGIASSASNNTADLEPWRCKRTDGKKWRCSRNVIPDQKY 269
Query: 113 CERHMHRGKNRSRKPVE 129
CERH H+ + RSRK VE
Sbjct: 270 CERHTHKSRPRSRKHVE 286
>sp|Q8S9M3|GRF9_ARATH Growth-regulating factor 9 OS=Arabidopsis thaliana GN=GRF9 PE=1
SV=1
Length = 431
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 65/124 (52%), Gaps = 23/124 (18%)
Query: 12 NRFPFT-ASQWQELEHQALIFKYMVSGIPVPPDLLFTI--------KRSYYFDRSPPSAA 62
N++P+ A+Q E QAL+++Y+ +G+ VP L+ I +Y + S +
Sbjct: 20 NKWPWMKAAQLMEFRMQALVYRYIEAGLRVPHHLVVPIWNSLALSSSSNYNYHSSSLLSN 79
Query: 63 KHFTHQHQHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKN 122
K TH ++ EP RCRRTDGKKWRCS KYCERHMHRG+
Sbjct: 80 KGVTHIDT--------------LETEPTRCRRTDGKKWRCSNTVLLFEKYCERHMHRGRK 125
Query: 123 RSRK 126
RSRK
Sbjct: 126 RSRK 129
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 64 HFTHQHQHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNR 123
HF+ E CF++ G + D EPGRCRRTDGKKWRCSK+ KYC++HMHRG +
Sbjct: 286 HFSPDTVLQERGCFRLQ-GVETDNEPGRCRRTDGKKWRCSKDVLSGQKYCDKHMHRGM-K 343
Query: 124 SRKPVELNTS 133
+ PV+ S
Sbjct: 344 KKHPVDTTNS 353
>sp|P83626|TNR26_MOUSE Tumor necrosis factor receptor superfamily member 26 OS=Mus
musculus GN=Tnfrsf26 PE=2 SV=1
Length = 204
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 57 SPPSAAKHFTHQHQHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERH 116
P ++HF H++ E CF + R E +C RT + +C + Y DS+ C
Sbjct: 61 CAPCDSEHFI-DHKNRESECFPCSVCRDDQEEVAKCSRTADRVCQCKQGTYCDSENCLER 119
Query: 117 MH 118
H
Sbjct: 120 CH 121
>sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2
SV=2
Length = 1049
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 17/77 (22%)
Query: 10 AINRFPFTASQWQELEHQALIFKYMVSGIPVPP--DLLFTIKRSYYFDRSPPSAAKHFTH 67
A+ A+ W+E +Y ++GIP P +L+F + D + S ++F
Sbjct: 433 ALKGVQIVATHWKEKS-----IRYKITGIPSAPMNELMFDL------DGNRISVVQYFKK 481
Query: 68 QH----QHVEWNCFQVG 80
Q+ +HV W C Q G
Sbjct: 482 QYNYSLKHVNWPCLQAG 498
>sp|P78504|JAG1_HUMAN Protein jagged-1 OS=Homo sapiens GN=JAG1 PE=1 SV=3
Length = 1218
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 84 KIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELNTSTCTA---NKS 140
K P PG + W+C E + C++ ++ + +P LN TC+ +K
Sbjct: 264 KCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCG--THQPC-LNGGTCSNTGPDKY 320
Query: 141 SSALSRYVYGPKEEVDEHAFFSEPSGKVRSFSAVSMDDSWQLTPLTMSSSCSSS 194
+ GP E+ EHA S+P S S+ + +P +CS++
Sbjct: 321 QCSCPEGYSGPNCEIAEHACLSDPCHNRGSCKETSLGFECECSPGWTGPTCSTN 374
>sp|Q9QXX0|JAG1_MOUSE Protein jagged-1 OS=Mus musculus GN=Jag1 PE=1 SV=1
Length = 1218
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 84 KIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELNTSTCTA---NKS 140
K P PG T + W+C E + C++ ++ + +P LN TC+ +K
Sbjct: 264 KCIPHPGCVHGTCNEPWQCLCETNWGGQLCDKDLNYCG--THQPC-LNRGTCSNTGPDKY 320
Query: 141 SSALSRYVYGPKEEVDEHAFFSEPSGKVRSFSAVSMDDSWQLTPLTMSSSCSSS 194
+ GP E+ EHA S+P S S + +P +CS++
Sbjct: 321 QCSCPEGYSGPNCEIAEHACLSDPCHNRGSCKETSSGFECECSPGWTGPTCSTN 374
>sp|Q63722|JAG1_RAT Protein jagged-1 OS=Rattus norvegicus GN=Jag1 PE=1 SV=2
Length = 1219
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 84 KIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELNTSTCTA---NKS 140
K P PG T + W+C E + C++ ++ + +P LN TC+ +K
Sbjct: 264 KCIPHPGCVHGTCNEPWQCLCETNWGGQLCDKDLNYCG--THQPC-LNRGTCSNTGPDKY 320
Query: 141 SSALSRYVYGPKEEVDEHAFFSEPSGKVRSFSAVSMDDSWQLTPLTMSSSCSSS 194
+ GP E+ EHA S+P S S + +P +CS++
Sbjct: 321 QCSCPEGYSGPNCEIAEHACLSDPCHNRGSCKETSSGFECECSPGWTGPTCSTN 374
>sp|Q9WU60|ATRN_MOUSE Attractin OS=Mus musculus GN=Atrn PE=2 SV=3
Length = 1428
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%)
Query: 109 DSKYCERHMHRGKNRSRKPVELNTSTCTANKSSSALSRYVYGPKEEVDEHAFFSE-PSGK 167
+ CER + + R P L T+ C SSS+ + K+ VD +A+ + P G+
Sbjct: 913 NGSVCERPANHSAKQCRTPCALRTA-CGECTSSSSECMWCSNMKQCVDSNAYVASFPFGQ 971
Query: 168 VRSFSAVSMDDSWQLTPLTMSSSCSSSSSKQRSFSGLQSDYSDLQLKSCADNTPKQQDKQ 227
+ +S P S C+ S ++ G +D S+ C + + K K
Sbjct: 972 CMEWYTMS-----SCPPENCSGYCTCSHCLEQPGCGWCTDPSNTGKGKCIEGSYKGPVKM 1026
Query: 228 PEEIPQKTVH 237
P + V+
Sbjct: 1027 PSQASAGNVY 1036
>sp|Q4PSE8|P2C71_ARATH Probable protein phosphatase 2C 71 OS=Arabidopsis thaliana
GN=At5g24940 PE=2 SV=1
Length = 447
Score = 31.2 bits (69), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 171 FSAVSMDDSWQLTPLTMSSSCSSSSSKQRSFSGLQSDYSDLQLKSCADNTPKQQDKQPEE 230
+A S D+S Q P+ +++ S SS+Q SGL + S + +K +D+ PK K P +
Sbjct: 341 IAARSADNSNQ-KPIATTATGHSVSSEQ---SGLTGEKSQMPIKIRSDSEPKSSAKVPNQ 396
Query: 231 IPQKTVHRFFDEWPPK 246
Q TVH D K
Sbjct: 397 -TQSTVHNDLDSSTAK 411
>sp|Q99J86|ATRN_RAT Attractin OS=Rattus norvegicus GN=Atrn PE=2 SV=1
Length = 1432
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 7/130 (5%)
Query: 109 DSKYCERHMHRGKNRSRKPVELNTSTCTANKSSSALSRYVYGPKEEVDEHAFFSE-PSGK 167
+ CER + + R P L T+ C SSS+ + K+ VD +A+ + P G+
Sbjct: 917 NGSVCERPANHSAKQCRTPCALRTA-CGECTSSSSECMWCSNMKQCVDSNAYVASFPFGQ 975
Query: 168 VRSFSAVSMDDSWQLTPLTMSSSCSSSSSKQRSFSGLQSDYSDLQLKSCADNTPKQQDKQ 227
+ +S P S C+ S ++ G +D S+ C + + K K
Sbjct: 976 CMEWYTMS-----SCPPENCSGYCTCSHCLEQPGCGWCTDPSNTGKGKCIEGSYKGPVKM 1030
Query: 228 PEEIPQKTVH 237
P V+
Sbjct: 1031 PSHASTGNVY 1040
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.127 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,318,209
Number of Sequences: 539616
Number of extensions: 4563962
Number of successful extensions: 13094
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 12192
Number of HSP's gapped (non-prelim): 397
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)