Query 023105
Match_columns 287
No_of_seqs 131 out of 146
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 16:26:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yrc_A Protein transport prote 74.5 0.94 3.2E-05 32.9 0.9 19 85-103 5-37 (59)
2 2hi3_A Homeodomain-only protei 57.1 7 0.00024 28.0 2.7 20 8-27 1-20 (73)
3 2ecc_A Homeobox and leucine zi 44.5 15 0.0005 27.8 2.8 20 8-27 2-21 (76)
4 2nut_A Protein transport prote 42.3 7.8 0.00027 39.7 1.2 18 86-103 59-90 (769)
5 1m2o_A SEC23, protein transpor 39.0 8.7 0.0003 39.3 1.0 17 87-103 51-81 (768)
6 3a02_A Homeobox protein arista 38.4 15 0.00052 25.1 1.9 16 12-27 2-17 (60)
7 2dn0_A Zinc fingers and homeob 38.0 27 0.00093 25.1 3.3 19 9-27 8-26 (76)
8 1ahd_P Antennapedia protein mu 37.5 22 0.00075 25.1 2.7 18 10-27 3-20 (68)
9 1ig7_A Homeotic protein MSX-1; 36.5 21 0.00071 24.1 2.3 17 11-27 2-18 (58)
10 2dmu_A Homeobox protein goosec 35.7 30 0.001 24.3 3.1 19 9-27 7-25 (70)
11 3eh1_A Protein transport prote 35.5 11 0.00038 38.6 1.1 16 88-103 84-110 (751)
12 2ly9_A Zinc fingers and homeob 33.9 30 0.001 24.5 2.9 18 10-27 7-24 (74)
13 2cra_A Homeobox protein HOX-B1 33.8 34 0.0012 24.0 3.2 18 10-27 8-25 (70)
14 1wh5_A ZF-HD homeobox family p 33.5 24 0.00081 26.1 2.4 17 10-26 18-34 (80)
15 2da4_A Hypothetical protein DK 33.2 36 0.0012 24.6 3.3 20 8-27 7-26 (80)
16 2h1k_A IPF-1, pancreatic and d 33.1 25 0.00086 24.3 2.3 17 11-27 5-21 (63)
17 2da2_A Alpha-fetoprotein enhan 33.0 35 0.0012 23.9 3.1 18 10-27 8-25 (70)
18 1bw5_A ISL-1HD, insulin gene e 33.0 25 0.00084 24.5 2.3 18 10-27 4-21 (66)
19 2e1o_A Homeobox protein PRH; D 32.8 25 0.00086 24.8 2.3 18 10-27 8-25 (70)
20 2og0_A Excisionase; protein-DN 32.6 13 0.00046 26.2 0.8 28 15-42 2-33 (52)
21 2djn_A Homeobox protein DLX-5; 32.5 37 0.0013 23.9 3.2 18 10-27 8-25 (70)
22 2hdd_A Protein (engrailed home 32.0 25 0.00084 24.1 2.1 18 10-27 4-21 (61)
23 2dmt_A Homeobox protein BARH-l 31.8 26 0.0009 25.4 2.4 17 11-27 19-35 (80)
24 2vi6_A Homeobox protein nanog; 31.3 24 0.00083 24.2 2.0 17 11-27 5-21 (62)
25 1pm6_A Excisionase; antiparall 31.0 18 0.00062 27.1 1.3 29 15-43 2-34 (72)
26 1jgg_A Segmentation protein EV 30.4 30 0.001 23.6 2.3 17 11-27 3-19 (60)
27 1wh7_A ZF-HD homeobox family p 30.2 39 0.0013 25.1 3.1 15 11-25 19-33 (80)
28 2dms_A Homeobox protein OTX2; 29.9 30 0.001 25.0 2.4 18 10-27 8-25 (80)
29 1uhs_A HOP, homeodomain only p 29.9 33 0.0011 24.3 2.5 17 11-27 3-19 (72)
30 1ftt_A TTF-1 HD, thyroid trans 29.8 36 0.0012 23.9 2.7 18 10-27 3-20 (68)
31 4gkh_A Aminoglycoside 3'-phosp 29.8 31 0.0011 28.4 2.7 25 19-43 61-85 (272)
32 1nk2_P Homeobox protein VND; h 29.7 47 0.0016 23.8 3.4 19 9-27 9-27 (77)
33 1b8i_A Ultrabithorax, protein 29.6 29 0.00099 25.3 2.3 19 9-27 20-38 (81)
34 2cuf_A FLJ21616 protein; homeo 29.0 31 0.001 25.9 2.4 18 10-27 8-25 (95)
35 1zq3_P PRD-4, homeotic bicoid 28.7 33 0.0011 24.1 2.4 17 11-27 4-20 (68)
36 2l7z_A Homeobox protein HOX-A1 28.6 33 0.0011 24.5 2.4 18 10-27 8-25 (73)
37 2da1_A Alpha-fetoprotein enhan 28.4 34 0.0011 24.0 2.4 18 10-27 8-25 (70)
38 1yz8_P Pituitary homeobox 2; D 27.9 35 0.0012 23.9 2.4 17 11-27 5-21 (68)
39 1puf_A HOX-1.7, homeobox prote 27.8 52 0.0018 23.6 3.3 17 11-27 15-31 (77)
40 2cue_A Paired box protein PAX6 27.7 51 0.0017 23.8 3.3 19 9-27 7-25 (80)
41 2kt0_A Nanog, homeobox protein 25.9 61 0.0021 23.4 3.4 19 10-28 23-41 (84)
42 2r7d_A Ribonuclease II family 25.8 27 0.00091 33.8 1.9 16 14-29 4-19 (469)
43 1lfb_A Liver transcription fac 25.4 34 0.0012 26.5 2.1 16 11-26 11-26 (99)
44 2k40_A Homeobox expressed in E 25.4 41 0.0014 23.4 2.4 17 11-27 3-19 (67)
45 3rkq_A Homeobox protein NKX-2. 25.1 43 0.0015 22.2 2.3 17 11-27 4-20 (58)
46 2r5y_A Homeotic protein sex co 24.6 40 0.0014 24.8 2.2 18 10-27 29-46 (88)
47 2dmq_A LIM/homeobox protein LH 24.6 61 0.0021 23.2 3.2 18 10-27 8-25 (80)
48 3ebe_A Protein MCM10 homolog; 24.5 15 0.00052 32.1 -0.1 43 89-133 151-197 (200)
49 2da6_A Hepatocyte nuclear fact 24.2 55 0.0019 26.0 3.1 17 10-26 7-23 (102)
50 2kra_A Prokineticin BV8; beta 23.6 29 0.00098 26.1 1.3 16 87-103 62-77 (77)
51 1akh_A Protein (mating-type pr 22.1 41 0.0014 22.8 1.8 17 11-27 7-23 (61)
52 1b72_A Protein (homeobox prote 22.0 47 0.0016 24.9 2.2 18 10-27 35-52 (97)
53 2da3_A Alpha-fetoprotein enhan 22.0 29 0.00099 24.8 1.0 17 11-27 19-35 (80)
54 1fjl_A Paired protein; DNA-bin 21.9 51 0.0017 23.8 2.3 17 11-27 20-36 (81)
55 3dkt_A Maritimacin; enzyme enc 21.1 54 0.0019 29.7 2.8 30 8-37 3-33 (265)
56 2m0c_A Homeobox protein arista 20.6 59 0.002 22.8 2.4 18 10-27 10-27 (75)
No 1
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=74.48 E-value=0.94 Score=32.90 Aligned_cols=19 Identities=37% Similarity=0.775 Sum_probs=14.9
Q ss_pred CCCCCCcccc--------------cCCCcceec
Q 023105 85 IDPEPGRCRR--------------TDGKKWRCS 103 (287)
Q Consensus 85 ~dpep~RCrR--------------tDGKkWRCs 103 (287)
.+-+|.||+| .+||+|+|-
T Consensus 5 ~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~ 37 (59)
T 2yrc_A 5 SSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACN 37 (59)
T ss_dssp SCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECS
T ss_pred CCCCCcccCCCCCCeEECCceEEECCCCEEEcc
Confidence 4557889998 358999995
No 2
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=57.11 E-value=7 Score=28.03 Aligned_cols=20 Identities=35% Similarity=0.094 Sum_probs=17.2
Q ss_pred ccccCCCCCCHHHHHHHHHH
Q 023105 8 MSAINRFPFTASQWQELEHQ 27 (287)
Q Consensus 8 ~~~~~r~pFT~~Qw~ELE~Q 27 (287)
|++..|..||..|..+||.-
T Consensus 1 ~~~k~Rt~ft~~Q~~~Le~~ 20 (73)
T 2hi3_A 1 MSAQTVSGPTEDQVEILEYN 20 (73)
T ss_dssp CCCSCCSSCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHH
Confidence 56678999999999999964
No 3
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=44.51 E-value=15 Score=27.76 Aligned_cols=20 Identities=20% Similarity=-0.069 Sum_probs=16.9
Q ss_pred ccccCCCCCCHHHHHHHHHH
Q 023105 8 MSAINRFPFTASQWQELEHQ 27 (287)
Q Consensus 8 ~~~~~r~pFT~~Qw~ELE~Q 27 (287)
.++..|..||..|+.+||.-
T Consensus 2 ~~g~~r~kfT~~Ql~~Le~~ 21 (76)
T 2ecc_A 2 SSGSSGKRKTKEQLAILKSF 21 (76)
T ss_dssp CCSCCCCCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHH
Confidence 35677899999999999974
No 4
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=42.32 E-value=7.8 Score=39.67 Aligned_cols=18 Identities=39% Similarity=0.831 Sum_probs=14.9
Q ss_pred CCCCCcccc--------------cCCCcceec
Q 023105 86 DPEPGRCRR--------------TDGKKWRCS 103 (287)
Q Consensus 86 dpep~RCrR--------------tDGKkWRCs 103 (287)
+-+|.||+| .+||+|+|.
T Consensus 59 ~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~ 90 (769)
T 2nut_A 59 QYEPVLCSRTTCRAVLNPLCQVDYRAKLWACN 90 (769)
T ss_dssp CSCCCBCSSTTCCCBCCTTSEEETTTTEEECS
T ss_pred CCCCCcCCCCCCCeEECCceEEeCCCCEEEcc
Confidence 346899999 679999995
No 5
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=39.01 E-value=8.7 Score=39.27 Aligned_cols=17 Identities=24% Similarity=0.720 Sum_probs=14.2
Q ss_pred CCCCcccc--------------cCCCcceec
Q 023105 87 PEPGRCRR--------------TDGKKWRCS 103 (287)
Q Consensus 87 pep~RCrR--------------tDGKkWRCs 103 (287)
-+|.||+| .+||+|+|.
T Consensus 51 ~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~ 81 (768)
T 1m2o_A 51 YNPVVCSGPHCKSILNPYCVIDPRNSSWSCP 81 (768)
T ss_dssp SCCCBCCSTTTCCBCCTTSCEETTTTEECCT
T ss_pred CCCCccCCCCCCeEECCceEEeCCCCEEEcc
Confidence 36899999 678999995
No 6
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=38.41 E-value=15 Score=25.11 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=11.9
Q ss_pred CCCCCCHHHHHHHHHH
Q 023105 12 NRFPFTASQWQELEHQ 27 (287)
Q Consensus 12 ~r~pFT~~Qw~ELE~Q 27 (287)
.|..||..|..+||.-
T Consensus 2 ~Rt~ft~~Q~~~Le~~ 17 (60)
T 3a02_A 2 SHMTFTSFQLEELEKA 17 (60)
T ss_dssp ---CCCHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHH
Confidence 5789999999999964
No 7
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.97 E-value=27 Score=25.06 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=15.5
Q ss_pred cccCCCCCCHHHHHHHHHH
Q 023105 9 SAINRFPFTASQWQELEHQ 27 (287)
Q Consensus 9 ~~~~r~pFT~~Qw~ELE~Q 27 (287)
....|..||..|+++||.-
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~ 26 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGS 26 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHH
Confidence 3445889999999999964
No 8
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=37.52 E-value=22 Score=25.10 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=15.3
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEHQ 27 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~Q 27 (287)
-+.|..||..|..+||.-
T Consensus 3 rr~Rt~ft~~Q~~~Le~~ 20 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKE 20 (68)
T ss_dssp SCTTCCCCHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHH
Confidence 456889999999999964
No 9
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=36.54 E-value=21 Score=24.08 Aligned_cols=17 Identities=41% Similarity=0.557 Sum_probs=14.4
Q ss_pred cCCCCCCHHHHHHHHHH
Q 023105 11 INRFPFTASQWQELEHQ 27 (287)
Q Consensus 11 ~~r~pFT~~Qw~ELE~Q 27 (287)
..|..||..|..+||.-
T Consensus 2 r~Rt~ft~~Q~~~Le~~ 18 (58)
T 1ig7_A 2 KPRTPFTTAQLLALERK 18 (58)
T ss_dssp CCCCCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 35789999999999964
No 10
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.67 E-value=30 Score=24.30 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=15.6
Q ss_pred cccCCCCCCHHHHHHHHHH
Q 023105 9 SAINRFPFTASQWQELEHQ 27 (287)
Q Consensus 9 ~~~~r~pFT~~Qw~ELE~Q 27 (287)
.-+.|..||..|..+||.-
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~ 25 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENL 25 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHH
Confidence 3456789999999999964
No 11
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=35.52 E-value=11 Score=38.60 Aligned_cols=16 Identities=38% Similarity=1.093 Sum_probs=13.3
Q ss_pred CCCcccc-----------cCCCcceec
Q 023105 88 EPGRCRR-----------TDGKKWRCS 103 (287)
Q Consensus 88 ep~RCrR-----------tDGKkWRCs 103 (287)
+|.||+| .|||+|+|-
T Consensus 84 ~p~RC~rCrayiNPf~~f~~~~~w~Cn 110 (751)
T 3eh1_A 84 TIVRCRSCRTYINPFVSFIDQRRWKCN 110 (751)
T ss_dssp CCCBCTTTCCBCCTTCEESSSSEEECT
T ss_pred CCCcccCccCEeCCceEEecCCEEEcc
Confidence 4789986 699999995
No 12
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=33.86 E-value=30 Score=24.53 Aligned_cols=18 Identities=28% Similarity=0.002 Sum_probs=15.4
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEHQ 27 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~Q 27 (287)
...|..||..|..+||.-
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~ 24 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVS 24 (74)
T ss_dssp CCTTCCCCHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHH
Confidence 556899999999999963
No 13
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=33.77 E-value=34 Score=24.05 Aligned_cols=18 Identities=33% Similarity=0.649 Sum_probs=15.1
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEHQ 27 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~Q 27 (287)
-..|..||..|.++||.-
T Consensus 8 rr~Rt~ft~~Q~~~Le~~ 25 (70)
T 2cra_A 8 RKKRIPYSKGQLRELERE 25 (70)
T ss_dssp CCSCCCSCHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHH
Confidence 455789999999999964
No 14
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=33.48 E-value=24 Score=26.09 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=14.4
Q ss_pred ccCCCCCCHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEH 26 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~ 26 (287)
-+.|..||..|+++||.
T Consensus 18 rR~Rt~ft~~Ql~~Le~ 34 (80)
T 1wh5_A 18 KRHRTKFTAEQKERMLA 34 (80)
T ss_dssp CCCSCCCCHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHH
Confidence 34567899999999997
No 15
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.21 E-value=36 Score=24.59 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=16.0
Q ss_pred ccccCCCCCCHHHHHHHHHH
Q 023105 8 MSAINRFPFTASQWQELEHQ 27 (287)
Q Consensus 8 ~~~~~r~pFT~~Qw~ELE~Q 27 (287)
..-+.|..||..|.++||.-
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~ 26 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKY 26 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHH
Confidence 34456789999999999964
No 16
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=33.06 E-value=25 Score=24.27 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=14.6
Q ss_pred cCCCCCCHHHHHHHHHH
Q 023105 11 INRFPFTASQWQELEHQ 27 (287)
Q Consensus 11 ~~r~pFT~~Qw~ELE~Q 27 (287)
+.|..||..|..+||.-
T Consensus 5 r~Rt~ft~~Q~~~Le~~ 21 (63)
T 2h1k_A 5 RTRTAYTRAQLLELEKE 21 (63)
T ss_dssp CCCCCCCHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHH
Confidence 46789999999999964
No 17
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=33.04 E-value=35 Score=23.86 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=15.1
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEHQ 27 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~Q 27 (287)
-..|..||..|.++||.-
T Consensus 8 rr~Rt~ft~~q~~~Le~~ 25 (70)
T 2da2_A 8 RSSRTRFTDYQLRVLQDF 25 (70)
T ss_dssp CCCCCCCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 456789999999999964
No 18
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=33.01 E-value=25 Score=24.48 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=15.1
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEHQ 27 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~Q 27 (287)
-+.|..||..|.++||.-
T Consensus 4 rr~Rt~ft~~q~~~Le~~ 21 (66)
T 1bw5_A 4 TRVRTVLNEKQLHTLRTC 21 (66)
T ss_dssp SCCCCCCSHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 356889999999999964
No 19
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=32.85 E-value=25 Score=24.79 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=15.1
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEHQ 27 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~Q 27 (287)
...|..||..|.++||.-
T Consensus 8 ~r~R~~ft~~q~~~Le~~ 25 (70)
T 2e1o_A 8 KGGQVRFSNDQTIELEKK 25 (70)
T ss_dssp CCCCCCCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 346789999999999964
No 20
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=32.62 E-value=13 Score=26.17 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=24.0
Q ss_pred CCCHHHHHHHH----HHHHHHHHHHhCCCCCC
Q 023105 15 PFTASQWQELE----HQALIFKYMVSGIPVPP 42 (287)
Q Consensus 15 pFT~~Qw~ELE----~QalIykYm~ag~pVP~ 42 (287)
.+|..+|.|.+ .+.-||||+..|-=+||
T Consensus 2 lltl~EwA~~~~~~~s~~Tl~r~ar~G~I~Pp 33 (52)
T 2og0_A 2 YLTLQEWNARQRRPRSLETVRRWVRESRIFPP 33 (52)
T ss_dssp EEEHHHHHHTSSSCCCHHHHHHHHHTTCEESC
T ss_pred eeeHHHHHHHhcCCCCHHHHHHHHHCCCCCCc
Confidence 36889999998 89999999999976565
No 21
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.53 E-value=37 Score=23.85 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=15.0
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEHQ 27 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~Q 27 (287)
-..|..||..|.++||.-
T Consensus 8 rr~Rt~ft~~Q~~~Le~~ 25 (70)
T 2djn_A 8 RKPRTIYSSFQLAALQRR 25 (70)
T ss_dssp CCSSCSSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 456789999999999963
No 22
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=31.95 E-value=25 Score=24.10 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=13.6
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEHQ 27 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~Q 27 (287)
-+.|..||..|..+||.-
T Consensus 4 rr~Rt~ft~~Q~~~Le~~ 21 (61)
T 2hdd_A 4 KRPRTAFSSEQLARLKRE 21 (61)
T ss_dssp ---CCCCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 346789999999999964
No 23
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.77 E-value=26 Score=25.37 Aligned_cols=17 Identities=35% Similarity=0.325 Sum_probs=14.2
Q ss_pred cCCCCCCHHHHHHHHHH
Q 023105 11 INRFPFTASQWQELEHQ 27 (287)
Q Consensus 11 ~~r~pFT~~Qw~ELE~Q 27 (287)
+.|..||..|+++||..
T Consensus 19 r~Rt~ft~~Q~~~Le~~ 35 (80)
T 2dmt_A 19 RSRTVFTELQLMGLEKR 35 (80)
T ss_dssp CSCCCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 34678999999999974
No 24
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=31.25 E-value=24 Score=24.20 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=12.7
Q ss_pred cCCCCCCHHHHHHHHHH
Q 023105 11 INRFPFTASQWQELEHQ 27 (287)
Q Consensus 11 ~~r~pFT~~Qw~ELE~Q 27 (287)
..|..||..|..+||.-
T Consensus 5 r~Rt~ft~~q~~~Le~~ 21 (62)
T 2vi6_A 5 KMRTVFSQAQLCALKDR 21 (62)
T ss_dssp ---CCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 45789999999999964
No 25
>1pm6_A Excisionase; antiparallel beta-sheet, winged-helix, CIS-trans-trans triproline, gene regulation; NMR {Enterobacteria phage HK022} SCOP: a.6.1.7
Probab=30.96 E-value=18 Score=27.12 Aligned_cols=29 Identities=14% Similarity=0.345 Sum_probs=24.9
Q ss_pred CCCHHHHHHHH----HHHHHHHHHHhCCCCCCC
Q 023105 15 PFTASQWQELE----HQALIFKYMVSGIPVPPD 43 (287)
Q Consensus 15 pFT~~Qw~ELE----~QalIykYm~ag~pVP~~ 43 (287)
.+|..+|.|.+ -+.-||+|+..|-=+||-
T Consensus 2 llTl~EwA~~~~~~~s~~Tl~r~ar~G~I~Pp~ 34 (72)
T 1pm6_A 2 YLTLQEWNARQRRPRSLETVRRWVRESRIFPPP 34 (72)
T ss_dssp EEEHHHHHHHSSSCCCHHHHHHHHHHTCEESCC
T ss_pred eeeHHHHHHHhcCCCCHHHHHHHHHCCCCCCch
Confidence 36899999999 899999999999866653
No 26
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=30.40 E-value=30 Score=23.57 Aligned_cols=17 Identities=35% Similarity=0.388 Sum_probs=14.4
Q ss_pred cCCCCCCHHHHHHHHHH
Q 023105 11 INRFPFTASQWQELEHQ 27 (287)
Q Consensus 11 ~~r~pFT~~Qw~ELE~Q 27 (287)
..|..||..|..+||.-
T Consensus 3 r~Rt~ft~~Q~~~Le~~ 19 (60)
T 1jgg_A 3 RYRTAFTRDQLGRLEKE 19 (60)
T ss_dssp CCCCCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 45789999999999964
No 27
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=30.18 E-value=39 Score=25.06 Aligned_cols=15 Identities=33% Similarity=0.237 Sum_probs=13.1
Q ss_pred cCCCCCCHHHHHHHH
Q 023105 11 INRFPFTASQWQELE 25 (287)
Q Consensus 11 ~~r~pFT~~Qw~ELE 25 (287)
+.|..||..|+.+||
T Consensus 19 R~Rt~ft~~Ql~~Le 33 (80)
T 1wh7_A 19 RFRTKFTAEQKEKML 33 (80)
T ss_dssp CCCCCCCHHHHHHHH
T ss_pred CCCccCCHHHHHHHH
Confidence 446789999999999
No 28
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=29.95 E-value=30 Score=25.00 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=15.1
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEHQ 27 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~Q 27 (287)
-+.|..||..|+++||.-
T Consensus 8 rr~Rt~ft~~Q~~~Le~~ 25 (80)
T 2dms_A 8 RRERTTFTRAQLDVLEAL 25 (80)
T ss_dssp CCCCSSCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 456789999999999964
No 29
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=29.92 E-value=33 Score=24.30 Aligned_cols=17 Identities=24% Similarity=0.094 Sum_probs=14.5
Q ss_pred cCCCCCCHHHHHHHHHH
Q 023105 11 INRFPFTASQWQELEHQ 27 (287)
Q Consensus 11 ~~r~pFT~~Qw~ELE~Q 27 (287)
..|..||..|..+||.-
T Consensus 3 k~Rt~ft~~Q~~~Le~~ 19 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYN 19 (72)
T ss_dssp CCCCCCCHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHH
Confidence 45789999999999964
No 30
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=29.84 E-value=36 Score=23.88 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=15.2
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEHQ 27 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~Q 27 (287)
-..|..||..|..+||.-
T Consensus 3 rr~Rt~ft~~Q~~~Le~~ 20 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERR 20 (68)
T ss_dssp SSSCSSCCHHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHH
Confidence 356889999999999964
No 31
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=29.77 E-value=31 Score=28.35 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCC
Q 023105 19 SQWQELEHQALIFKYMVSGIPVPPD 43 (287)
Q Consensus 19 ~Qw~ELE~QalIykYm~ag~pVP~~ 43 (287)
..-.+|+.++.+.+++++++|||.=
T Consensus 61 ~~~~~~~~E~~~l~~l~~~vPVP~v 85 (272)
T 4gkh_A 61 SVANDVTDEMVRLNWLTAFMPLPTI 85 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCCCE
T ss_pred CCHhHHHHHHHHHHHhccCCCcCeE
Confidence 3456889999999999999999863
No 32
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=29.74 E-value=47 Score=23.84 Aligned_cols=19 Identities=37% Similarity=0.373 Sum_probs=15.5
Q ss_pred cccCCCCCCHHHHHHHHHH
Q 023105 9 SAINRFPFTASQWQELEHQ 27 (287)
Q Consensus 9 ~~~~r~pFT~~Qw~ELE~Q 27 (287)
.-..|..||..|+.+||.-
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~ 27 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERR 27 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHH
Confidence 3456789999999999964
No 33
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=29.63 E-value=29 Score=25.35 Aligned_cols=19 Identities=32% Similarity=0.275 Sum_probs=13.5
Q ss_pred cccCCCCCCHHHHHHHHHH
Q 023105 9 SAINRFPFTASQWQELEHQ 27 (287)
Q Consensus 9 ~~~~r~pFT~~Qw~ELE~Q 27 (287)
.-+.|..||..|..+||.-
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~ 38 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKE 38 (81)
T ss_dssp ----CCCCCHHHHHHHHHH
T ss_pred CCCCCcccCHHHHHHHHHH
Confidence 3456789999999999964
No 34
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=29.02 E-value=31 Score=25.89 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=14.9
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEHQ 27 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~Q 27 (287)
-+.|..||..|+.+||.-
T Consensus 8 rr~R~~ft~~ql~~Le~~ 25 (95)
T 2cuf_A 8 RGSRFTWRKECLAVMESY 25 (95)
T ss_dssp CCCSCCCCHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHH
Confidence 356789999999999963
No 35
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=28.67 E-value=33 Score=24.08 Aligned_cols=17 Identities=47% Similarity=0.546 Sum_probs=14.5
Q ss_pred cCCCCCCHHHHHHHHHH
Q 023105 11 INRFPFTASQWQELEHQ 27 (287)
Q Consensus 11 ~~r~pFT~~Qw~ELE~Q 27 (287)
..|..||..|..+||.-
T Consensus 4 r~Rt~ft~~Q~~~Le~~ 20 (68)
T 1zq3_P 4 RTRTTFTSSQIAELEQH 20 (68)
T ss_dssp CCSCCCCHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHH
Confidence 45789999999999964
No 36
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=28.64 E-value=33 Score=24.51 Aligned_cols=18 Identities=39% Similarity=0.625 Sum_probs=15.1
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEHQ 27 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~Q 27 (287)
-..|..||..|..+||.-
T Consensus 8 rr~Rt~ft~~Q~~~Le~~ 25 (73)
T 2l7z_A 8 RKKRVPYTKVQLKELERE 25 (73)
T ss_dssp CCCCCCSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 456789999999999964
No 37
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=28.44 E-value=34 Score=23.97 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=15.0
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEHQ 27 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~Q 27 (287)
-..|..||..|.++||.-
T Consensus 8 rr~Rt~ft~~q~~~Le~~ 25 (70)
T 2da1_A 8 KRPRTRITDDQLRVLRQY 25 (70)
T ss_dssp CSCSCCCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 456789999999999963
No 38
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=27.89 E-value=35 Score=23.89 Aligned_cols=17 Identities=41% Similarity=0.466 Sum_probs=14.5
Q ss_pred cCCCCCCHHHHHHHHHH
Q 023105 11 INRFPFTASQWQELEHQ 27 (287)
Q Consensus 11 ~~r~pFT~~Qw~ELE~Q 27 (287)
..|..||..|.++||.-
T Consensus 5 r~Rt~ft~~Q~~~Le~~ 21 (68)
T 1yz8_P 5 RQRTHFTSQQLQQLEAT 21 (68)
T ss_dssp CSCCCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 45789999999999964
No 39
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=27.80 E-value=52 Score=23.58 Aligned_cols=17 Identities=41% Similarity=0.556 Sum_probs=14.4
Q ss_pred cCCCCCCHHHHHHHHHH
Q 023105 11 INRFPFTASQWQELEHQ 27 (287)
Q Consensus 11 ~~r~pFT~~Qw~ELE~Q 27 (287)
..|..||..|..+||.-
T Consensus 15 r~Rt~ft~~Q~~~Le~~ 31 (77)
T 1puf_A 15 KKRCPYTKHQTLELEKE 31 (77)
T ss_dssp CCCCCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 45788999999999964
No 40
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=27.69 E-value=51 Score=23.82 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=15.4
Q ss_pred cccCCCCCCHHHHHHHHHH
Q 023105 9 SAINRFPFTASQWQELEHQ 27 (287)
Q Consensus 9 ~~~~r~pFT~~Qw~ELE~Q 27 (287)
.-+.|..||..|+++||.-
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~ 25 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKE 25 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHH
Confidence 3456789999999999963
No 41
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=25.93 E-value=61 Score=23.41 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=15.2
Q ss_pred ccCCCCCCHHHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEHQA 28 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~Qa 28 (287)
-+.|..||..|+.+||.--
T Consensus 23 rr~Rt~ft~~Q~~~Le~~F 41 (84)
T 2kt0_A 23 QKTRTVFSSTQLCVLNDRF 41 (84)
T ss_dssp CCCSSCCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 3457889999999999653
No 42
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=25.81 E-value=27 Score=33.81 Aligned_cols=16 Identities=31% Similarity=0.177 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHHHHH
Q 023105 14 FPFTASQWQELEHQAL 29 (287)
Q Consensus 14 ~pFT~~Qw~ELE~Qal 29 (287)
-+||++|||+||.=|+
T Consensus 4 ~~~~~~~~~~~e~~a~ 19 (469)
T 2r7d_A 4 PELTPAQRTEVELLAR 19 (469)
T ss_dssp CCCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc
Confidence 5899999999998876
No 43
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=25.42 E-value=34 Score=26.50 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=13.1
Q ss_pred cCCCCCCHHHHHHHHH
Q 023105 11 INRFPFTASQWQELEH 26 (287)
Q Consensus 11 ~~r~pFT~~Qw~ELE~ 26 (287)
+.|..||..|+++||.
T Consensus 11 r~Rt~ft~~Ql~~LE~ 26 (99)
T 1lfb_A 11 RNRFKWGPASQQILFQ 26 (99)
T ss_dssp --CCCCCHHHHHHHHH
T ss_pred CCCcCcCHHHHHHHHH
Confidence 4578999999999996
No 44
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=25.40 E-value=41 Score=23.36 Aligned_cols=17 Identities=35% Similarity=0.348 Sum_probs=14.3
Q ss_pred cCCCCCCHHHHHHHHHH
Q 023105 11 INRFPFTASQWQELEHQ 27 (287)
Q Consensus 11 ~~r~pFT~~Qw~ELE~Q 27 (287)
+.|..||..|..+||.-
T Consensus 3 r~Rt~ft~~q~~~Le~~ 19 (67)
T 2k40_A 3 RPRTAFTQNQIEVLENV 19 (67)
T ss_dssp CCSCCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 45789999999999964
No 45
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=25.08 E-value=43 Score=22.17 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=14.2
Q ss_pred cCCCCCCHHHHHHHHHH
Q 023105 11 INRFPFTASQWQELEHQ 27 (287)
Q Consensus 11 ~~r~pFT~~Qw~ELE~Q 27 (287)
..|..||..|..+||.-
T Consensus 4 r~Rt~~t~~q~~~Le~~ 20 (58)
T 3rkq_A 4 KPRVLFSQAQVYELERR 20 (58)
T ss_dssp CCCCCCCHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHH
Confidence 35788999999999963
No 46
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=24.58 E-value=40 Score=24.85 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=14.0
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEHQ 27 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~Q 27 (287)
-+.|..||..|+.+||.-
T Consensus 29 rr~Rt~ft~~Ql~~Le~~ 46 (88)
T 2r5y_A 29 KRQRTSYTRYQTLELEKE 46 (88)
T ss_dssp --CCCCCCHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHH
Confidence 355789999999999964
No 47
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.55 E-value=61 Score=23.17 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=15.1
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEHQ 27 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~Q 27 (287)
-+.|..||..|..+||.-
T Consensus 8 rr~Rt~ft~~Q~~~Le~~ 25 (80)
T 2dmq_A 8 KRMRTSFKHHQLRTMKSY 25 (80)
T ss_dssp CCCCCCCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 456789999999999964
No 48
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=24.49 E-value=15 Score=32.12 Aligned_cols=43 Identities=23% Similarity=0.608 Sum_probs=24.9
Q ss_pred CCccc--ccCCCcceecCccCCCch-hHHHHhhccCCCCC-CCCCCCCc
Q 023105 89 PGRCR--RTDGKKWRCSKEAYPDSK-YCERHMHRGKNRSR-KPVELNTS 133 (287)
Q Consensus 89 p~RCr--RtDGKkWRCsr~a~~~~k-~Ce~H~~rgr~Rsr-k~ve~~~~ 133 (287)
=|.|+ |.||+ +|..-+...+. ||+.|+...-++.+ +.+|.+.+
T Consensus 151 lG~Ck~~kkdG~--~C~~~Vn~~~~eyC~yHv~~~~~k~~s~R~El~~s 197 (200)
T 3ebe_A 151 LGTCKARKKNGD--PCTQMVNLNDCEYCQYHVQAQYKKVSSKRADLQSS 197 (200)
T ss_dssp EEECSSBCTTSC--BCCCEEETTTCSSCHHHHHHHHTC-----------
T ss_pred CcEeeCEecCCC--cCCCcEeCCcCcccHhHHHHHHHHhhcCChhhccc
Confidence 45675 46777 59988886554 99999988877654 77887654
No 49
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.18 E-value=55 Score=25.96 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.5
Q ss_pred ccCCCCCCHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEH 26 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~ 26 (287)
-+.|+.||++|+++||.
T Consensus 7 Rr~Rt~ft~~ql~~Le~ 23 (102)
T 2da6_A 7 GRNRFKWGPASQQILYQ 23 (102)
T ss_dssp CCCCCCCCHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHH
Confidence 45689999999999985
No 50
>2kra_A Prokineticin BV8; beta strands, beta turn, helix, disulfide bond, secreted, CO protein; NMR {Bombina variegata}
Probab=23.63 E-value=29 Score=26.14 Aligned_cols=16 Identities=25% Similarity=0.654 Sum_probs=13.4
Q ss_pred CCCCcccccCCCcceec
Q 023105 87 PEPGRCRRTDGKKWRCS 103 (287)
Q Consensus 87 pep~RCrRtDGKkWRCs 103 (287)
.+...|++.|| +|||+
T Consensus 62 ~~GL~C~~~~~-~~~c~ 77 (77)
T 2kra_A 62 KSGLTCSKSGE-KFKCS 77 (77)
T ss_dssp CTTCCEEECSS-SEEEC
T ss_pred CCCCeEeCCCC-EEeeC
Confidence 36788999988 99995
No 51
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=22.13 E-value=41 Score=22.81 Aligned_cols=17 Identities=12% Similarity=0.046 Sum_probs=10.9
Q ss_pred cCCCCCCHHHHHHHHHH
Q 023105 11 INRFPFTASQWQELEHQ 27 (287)
Q Consensus 11 ~~r~pFT~~Qw~ELE~Q 27 (287)
..|..||..|..+||.-
T Consensus 7 r~Rt~ft~~q~~~Le~~ 23 (61)
T 1akh_A 7 KGKSSISPQARAFLEEV 23 (61)
T ss_dssp -----CCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 35788999999999964
No 52
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=22.03 E-value=47 Score=24.94 Aligned_cols=18 Identities=39% Similarity=0.383 Sum_probs=13.9
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEHQ 27 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~Q 27 (287)
.+.|..||..|+.+||.-
T Consensus 35 rr~Rt~ft~~Ql~~Le~~ 52 (97)
T 1b72_A 35 SGLRTNFTTRQLTELEKE 52 (97)
T ss_dssp --CCCCCCHHHHHHHHHH
T ss_pred CCCCcCcCHHHHHHHHHH
Confidence 345788999999999964
No 53
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=21.99 E-value=29 Score=24.80 Aligned_cols=17 Identities=24% Similarity=0.124 Sum_probs=14.0
Q ss_pred cCCCCCCHHHHHHHHHH
Q 023105 11 INRFPFTASQWQELEHQ 27 (287)
Q Consensus 11 ~~r~pFT~~Qw~ELE~Q 27 (287)
+.|..||..|+++||.-
T Consensus 19 r~Rt~ft~~Ql~~Le~~ 35 (80)
T 2da3_A 19 RLRTTITPEQLEILYQK 35 (80)
T ss_dssp TCCSSCCTTTHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 34678999999999863
No 54
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=21.87 E-value=51 Score=23.80 Aligned_cols=17 Identities=47% Similarity=0.563 Sum_probs=14.4
Q ss_pred cCCCCCCHHHHHHHHHH
Q 023105 11 INRFPFTASQWQELEHQ 27 (287)
Q Consensus 11 ~~r~pFT~~Qw~ELE~Q 27 (287)
+.|..||..|..+||.-
T Consensus 20 r~Rt~ft~~Q~~~Le~~ 36 (81)
T 1fjl_A 20 RSRTTFSASQLDELERA 36 (81)
T ss_dssp CCCCCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 45788999999999963
No 55
>3dkt_A Maritimacin; enzyme encapsulation, nanocompartment, oxidative stress, FER like protein, HK97-fold, antibiotic; 3.10A {Thermotoga maritima}
Probab=21.09 E-value=54 Score=29.74 Aligned_cols=30 Identities=37% Similarity=0.597 Sum_probs=22.8
Q ss_pred ccccCCCCCCHHHHHHHHHHHH-HHHHHHhC
Q 023105 8 MSAINRFPFTASQWQELEHQAL-IFKYMVSG 37 (287)
Q Consensus 8 ~~~~~r~pFT~~Qw~ELE~Qal-IykYm~ag 37 (287)
++.+.-.|+|+++|+|+|..|- ++|-..+|
T Consensus 3 ~L~R~~APis~~~W~~Id~~a~~~~k~~L~g 33 (265)
T 3dkt_A 3 FLKRSFAPLTEKQWQEIDNRAREIFKTQLYG 33 (265)
T ss_dssp SSCGGGSSCCHHHHHHHHHHHHHHHHHHCGG
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 3566668999999999999874 56655554
No 56
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.60 E-value=59 Score=22.76 Aligned_cols=18 Identities=44% Similarity=0.484 Sum_probs=14.9
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 023105 10 AINRFPFTASQWQELEHQ 27 (287)
Q Consensus 10 ~~~r~pFT~~Qw~ELE~Q 27 (287)
-..|..||..|..+||.-
T Consensus 10 rr~Rt~ft~~q~~~Le~~ 27 (75)
T 2m0c_A 10 RRNRTTFTSYQLEELEKV 27 (75)
T ss_dssp CSCSCSSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 455789999999999964
Done!