BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023106
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System
Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At
1.95 A Resolution
Length = 208
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 8/183 (4%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRIN------KIWPQKASSFDSQ--DPKEAHARRGAPW 158
+ +V L+G PG+GKSTL+ + ++ ++ P D++ +P+ R+GAP
Sbjct: 22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPXDGFHLDNRLLEPRGLLPRKGAPE 81
Query: 159 TFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW 218
TF Q V P FD + VG + +V I++GNYL D W
Sbjct: 82 TFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW 141
Query: 219 KDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNA 278
+D+++++D +EV R+++R + G D A R + ND NA I ++ A
Sbjct: 142 RDLTAIWDVSIRLEVPXADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPA 201
Query: 279 DLV 281
DL
Sbjct: 202 DLT 204
>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A
Putative P-Loop Containing Kinase With A Circular
Permutation.
pdb|2GAA|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A
Putative P-Loop Containing Kinase With A Circular
Permutation
Length = 359
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 34/152 (22%)
Query: 145 QDPKEAHARRGAPWTFXXXXXXXXXXXXXXQG---------------------------- 176
+DP+ AH RRG+P TF
Sbjct: 175 KDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLXKVSSHHKFYSTSSVFEKLSKTFSQTI 234
Query: 177 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK-----WF 230
++ P F+H + DP D + ++VI++G YL D WK + + +
Sbjct: 235 PDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYK 294
Query: 231 IEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 262
I++D + +RV KRH+ +G +A+ R ++
Sbjct: 295 IDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDP 147
N + V L G PG+GKST+A E+ + IN +K +F S+ P
Sbjct: 22 NYRVCVILVGSPGSGKSTIAEELXQIIN----EKYHTFLSEHP 60
>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
pdb|1XRJ|B Chain B, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
Length = 261
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRI--NKI-WPQKASSFDSQD--------PKEAHARRGA- 156
++G++G +GKS++ A++V+ + N++ + QK SQD ++A A +G
Sbjct: 22 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQF 81
Query: 157 ----PWTFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 212
P F +V P +D V +++ + VV+ +G F
Sbjct: 82 NFDHPDAFDNELILKTLKEITEGKTVQIPVYDF-VSHSRKEETVTVYPADVVLFEGILAF 140
Query: 213 LDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPD-VAKWRIEYNDRPNAEL 270
++V +F K F++ D DT + R + R IS G+ + + I + E
Sbjct: 141 YS----QEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEF 196
Query: 271 IMKSKKNADLVI 282
+ +KK AD++I
Sbjct: 197 CLPTKKYADVII 208
>pdb|1UDW|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UDW|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UEI|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEI|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEJ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UEJ|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UFQ|A Chain A, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|B Chain B, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|C Chain C, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|D Chain D, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UJ2|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
pdb|1UJ2|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
Length = 252
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRI--NKI-WPQKASSFDSQD--------PKEAHARRGA- 156
++G++G +GKS++ A++V+ + N++ + QK SQD ++A A +G
Sbjct: 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQF 83
Query: 157 ----PWTFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 212
P F +V P +D V +++ + VV+ +G F
Sbjct: 84 NFDHPDAFDNELILKTLKEITEGKTVQIPVYDF-VSHSRKEETVTVYPADVVLFEGILAF 142
Query: 213 LDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPD-VAKWRIEYNDRPNAEL 270
++V +F K F++ D DT + R + R IS G+ + + I + E
Sbjct: 143 YS----QEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEF 198
Query: 271 IMKSKKNADLVI 282
+ +KK AD++I
Sbjct: 199 CLPTKKYADVII 210
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 21/95 (22%)
Query: 56 RSLVQNKTSLKVLCSQRREIPVVEARCMDE---------------VYDALAQRLLPTSAL 100
R+L+Q ++K++ +EI E R ++E VY+ L +LL A
Sbjct: 35 RALIQADVNVKLVLKMSKEI---ERRALEEKTPKGLSKKEHIIKIVYEELV-KLLGEEAK 90
Query: 101 ASNVNVK--HIVGLAGPPGAGKSTLAAEVVRRINK 133
+N K +++ L G G+GK+T AA++ R I K
Sbjct: 91 KLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQK 125
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 21/95 (22%)
Query: 56 RSLVQNKTSLKVLCSQRREIPVVEARCMDE---------------VYDALAQRLLPTSAL 100
R+L+Q ++K++ +EI E R ++E VY+ L +LL A
Sbjct: 35 RALIQADVNVKLVLKMSKEI---ERRALEEKTPKGLSKKEHIIKIVYEELV-KLLGEEAK 90
Query: 101 ASNVNVK--HIVGLAGPPGAGKSTLAAEVVRRINK 133
+N K +++ L G G+GK+T AA++ R I K
Sbjct: 91 KLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQK 125
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 26/193 (13%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRI--NKIWP-QKASSFDSQD--------PKEAHARRGA- 156
++G++G +GKST+ +++ + N++ Q+ SQD ++A A +G
Sbjct: 27 LIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQY 86
Query: 157 ----PWTFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 212
P F +V P++D + + +V VV+ +G +F
Sbjct: 87 NFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVV-YPADVVLFEGILVF 145
Query: 213 LDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYND--RPN-AE 269
+++ MF + F++ D D + R + R + G+ D+ + +Y +P E
Sbjct: 146 YS----QEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGR--DLEQILTQYTTFVKPAFEE 199
Query: 270 LIMKSKKNADLVI 282
+ +KK AD++I
Sbjct: 200 FCLPTKKYADVII 212
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 110 VGLAGPPGAGKSTL 123
VGL+GPPGAGKST
Sbjct: 77 VGLSGPPGAGKSTF 90
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 19/67 (28%)
Query: 84 DEVYDALAQRLLPTSALASNVNVKHIVG------------------LAGPPGAGKSTLAA 125
D + LA R+ P + LA + +H++ L GPPG GK+TLA
Sbjct: 10 DNTFQPLAARMRPEN-LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAE 68
Query: 126 EVVRRIN 132
+ R N
Sbjct: 69 VIARYAN 75
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
I+ LAGPPG GK++LA + + + +
Sbjct: 110 ILCLAGPPGVGKTSLAKSIAKSLGR 134
>pdb|3TQC|A Chain A, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
pdb|3TQC|B Chain B, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
Length = 321
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 74/203 (36%), Gaps = 46/203 (22%)
Query: 74 EIPVVEARCMDEVYDALAQRLLPTSALASNV--------------NVKHIVGLAGPPGAG 119
+I +V + + E+Y L+ RLL A V +I+G+AG G
Sbjct: 46 QIEIVSLKEVTEIYLPLS-RLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVG 104
Query: 120 KSTLAAEVVRRINKIWPQKAS-----------SFDSQDPKEAHARRGAPWTFXX-XXXXX 167
KST + V++ + WP + S + + R+G P ++
Sbjct: 105 KST-TSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRV 163
Query: 168 XXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG-NYL--------------- 211
Q +V P + H D V + Q +VI++G N L
Sbjct: 164 LNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFV 223
Query: 212 --FLDGGVWKDVSSMFDEKWFIE 232
F D ++ D + +KW+I+
Sbjct: 224 SDFFDFSLFVDAQAQVIQKWYID 246
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 81 RCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129
R +DEV D + QRL N+ H++ +GPPG GK+ A + R
Sbjct: 14 RTLDEVVGQDEVIQRL---KGYVERKNIPHLL-FSGPPGTGKTATAIALAR 60
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 81 RCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129
R +DEV D + QRL N+ H++ +GPPG GK+ A + R
Sbjct: 14 RTLDEVVGQDEVIQRL---KGYVERKNIPHLL-FSGPPGTGKTATAIALAR 60
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAP--WTF 160
K + L GP GAGKST+ ++ +++N + +DS +E R GA W F
Sbjct: 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEF------YDS--DQEIEKRTGADVGWVF 51
>pdb|1W5S|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5S|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5T|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|C Chain C, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
Length = 412
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK 133
EA + +Y RLL + L S+VN+ I G G G GK+TLA V+R+++
Sbjct: 30 EAEALARIY---LNRLLSGAGL-SDVNM--IYGSIGRVGIGKTTLAKFTVKRVSE 78
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 100 LASNVNVKHIVGLAGPPGAGKSTLAAEV 127
L+ V I+ L GP GAGKSTL A +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARM 46
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 100 LASNVNVKHIVGLAGPPGAGKSTLAAEV 127
L+ V I+ L GP GAGKSTL A +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARM 46
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 110 VGLAGPPGAGKSTLAAEVVRRINKIWP 136
V LAGPPG GK+ LA + + + P
Sbjct: 66 VLLAGPPGTGKTALALAIAQELGSKVP 92
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 110 VGLAGPPGAGKSTLAAEVVRRINKIWP 136
VGL G P AGKS+L A + R KI P
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAHPKIAP 186
>pdb|3NWP|A Chain A, Crystal Structure Of A 6-Phosphogluconolactonase
(Sbal_2240) From Shewanella Baltica Os155 At 1.40 A
Resolution
pdb|3NWP|B Chain B, Crystal Structure Of A 6-Phosphogluconolactonase
(Sbal_2240) From Shewanella Baltica Os155 At 1.40 A
Resolution
Length = 233
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 218 WKDVS-SMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWR 259
W DV ++ DE+W +E D D + +R+++ H+ + + AK+R
Sbjct: 63 WSDVYITLADERW-VEADADASNERLVREHLLQNRASN-AKFR 103
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 112 LAGPPGAGKSTLAAEVVRRINKIWP 136
LAGPPG GK+ LA + + + P
Sbjct: 82 LAGPPGTGKTALALAIAQELGSKVP 106
>pdb|1YE8|A Chain A, Crystal Structure Of Thep1 From The Hyperthermophile
Aquifex Aeolicus
Length = 178
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 112 LAGPPGAGKSTLAAEVVRRINK 133
+ G PG GK+TL ++V R+ K
Sbjct: 5 ITGEPGVGKTTLVKKIVERLGK 26
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129
++ AR +D YD Q L S A I+ AGP G GKST+ + + R
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQP---NSIIAFAGPSGGGKSTIFSLLER 50
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 100 LASNVNVKHIVGLAGPPGAGKSTLAA 125
L+ V I+ L GP GAGKSTL A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA 44
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 100 LASNVNVKHIVGLAGPPGAGKSTLAA 125
L+ V I+ L GP GAGKSTL A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA 44
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 112 LAGPPGAGKSTLAAEVVRRINKI 134
+ GPPG GK+ +A +V ++KI
Sbjct: 380 IQGPPGTGKTVTSATIVYHLSKI 402
>pdb|2JGJ|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Methamidophos
Length = 535
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 442 IEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 495
>pdb|2JGE|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Methamidophos
Length = 533
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 442 IEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 495
>pdb|3DL7|A Chain A, Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
Length = 538
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 446 IEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 499
>pdb|2JGE|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Methamidophos
pdb|2JGJ|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Methamidophos
Length = 536
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 445 IEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 498
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,437,299
Number of Sequences: 62578
Number of extensions: 331214
Number of successful extensions: 1182
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1141
Number of HSP's gapped (non-prelim): 49
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)