Query 023106
Match_columns 287
No_of_seqs 420 out of 2077
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:29:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023106.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023106hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 1E-38 2.2E-43 270.8 2.2 173 77-256 2-224 (240)
2 COG3842 PotA ABC-type spermidi 100.0 1.9E-37 4.2E-42 284.4 2.0 175 75-256 3-225 (352)
3 COG1116 TauB ABC-type nitrate/ 100.0 4.9E-36 1.1E-40 260.5 4.6 156 76-240 2-196 (248)
4 COG1125 OpuBA ABC-type proline 100.0 3.4E-36 7.3E-41 260.6 2.8 174 77-257 1-225 (309)
5 COG1118 CysA ABC-type sulfate/ 100.0 8.2E-36 1.8E-40 264.3 5.0 173 77-256 2-226 (345)
6 COG3839 MalK ABC-type sugar tr 100.0 3.5E-36 7.6E-41 274.7 1.2 176 75-257 1-223 (338)
7 COG1120 FepC ABC-type cobalami 100.0 1.4E-35 3E-40 261.6 3.0 185 77-268 2-239 (258)
8 COG1135 AbcC ABC-type metal io 100.0 4.5E-35 9.8E-40 260.1 4.2 177 77-256 1-230 (339)
9 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.4E-35 7.4E-40 258.0 3.2 177 75-258 2-228 (254)
10 COG1127 Ttg2A ABC-type transpo 100.0 3.7E-35 8E-40 252.5 3.3 176 75-257 6-235 (263)
11 COG3638 ABC-type phosphate/pho 100.0 3E-34 6.6E-39 246.3 4.2 182 76-264 2-244 (258)
12 COG1136 SalX ABC-type antimicr 100.0 1.9E-34 4.1E-39 249.8 1.4 161 77-240 1-208 (226)
13 COG1124 DppF ABC-type dipeptid 100.0 8E-34 1.7E-38 245.0 3.0 179 75-256 1-230 (252)
14 COG2884 FtsE Predicted ATPase 100.0 9.2E-34 2E-38 235.9 2.8 158 77-240 1-202 (223)
15 COG0411 LivG ABC-type branched 100.0 4.2E-34 9.1E-39 246.9 0.7 175 76-257 3-239 (250)
16 COG1122 CbiO ABC-type cobalt t 100.0 2.2E-32 4.7E-37 240.2 3.6 178 76-259 2-230 (235)
17 COG4175 ProV ABC-type proline/ 100.0 4.6E-32 9.9E-37 241.1 4.4 179 76-257 3-254 (386)
18 COG1117 PstB ABC-type phosphat 100.0 1.4E-31 3E-36 226.6 6.2 177 75-256 5-236 (253)
19 PRK11650 ugpC glycerol-3-phosp 100.0 1.9E-32 4.1E-37 255.2 -1.3 176 75-257 1-224 (356)
20 COG4555 NatA ABC-type Na+ tran 100.0 5.9E-32 1.3E-36 227.0 1.7 178 77-260 1-225 (245)
21 TIGR03265 PhnT2 putative 2-ami 100.0 1.8E-32 4E-37 255.1 -1.7 176 75-257 2-224 (353)
22 PRK11432 fbpC ferric transport 100.0 2.3E-32 5E-37 254.1 -1.6 175 75-256 4-225 (351)
23 COG1137 YhbG ABC-type (unclass 100.0 3.5E-32 7.5E-37 228.1 -2.2 178 75-259 2-230 (243)
24 TIGR02314 ABC_MetN D-methionin 100.0 4.8E-32 1E-36 251.0 -1.7 177 77-256 1-229 (343)
25 COG0410 LivF ABC-type branched 100.0 2.4E-31 5.2E-36 228.1 1.9 175 76-257 2-226 (237)
26 COG1131 CcmA ABC-type multidru 100.0 1.6E-31 3.4E-36 243.0 0.1 177 75-258 2-227 (293)
27 PRK09536 btuD corrinoid ABC tr 100.0 3.2E-31 6.9E-36 249.9 1.6 175 75-256 1-227 (402)
28 PRK09452 potA putrescine/sperm 100.0 1.3E-31 2.9E-36 250.8 -1.5 176 75-257 12-234 (375)
29 PRK13537 nodulation ABC transp 100.0 2.1E-31 4.6E-36 243.7 -0.9 176 76-258 6-228 (306)
30 PRK13536 nodulation factor exp 100.0 2.3E-31 5E-36 246.5 -0.8 177 75-258 39-262 (340)
31 COG4559 ABC-type hemin transpo 100.0 2.9E-30 6.2E-35 218.5 4.7 176 77-259 1-232 (259)
32 COG4604 CeuD ABC-type enteroch 100.0 2.4E-30 5.3E-35 216.6 4.0 177 77-260 1-228 (252)
33 TIGR03258 PhnT 2-aminoethylpho 100.0 2.9E-31 6.3E-36 247.6 -2.0 174 77-257 5-228 (362)
34 COG3840 ThiQ ABC-type thiamine 100.0 1.3E-30 2.8E-35 215.8 2.0 171 77-256 1-218 (231)
35 PRK11607 potG putrescine trans 100.0 4.1E-31 8.8E-36 247.8 -1.3 176 75-257 17-239 (377)
36 COG4181 Predicted ABC-type tra 100.0 3.3E-30 7.1E-35 211.5 4.2 161 77-240 6-212 (228)
37 PRK11000 maltose/maltodextrin 100.0 3.7E-31 8E-36 247.9 -2.0 175 75-256 1-222 (369)
38 PRK10851 sulfate/thiosulfate t 100.0 9.4E-31 2E-35 243.6 0.4 174 77-257 2-226 (353)
39 cd03261 ABC_Org_Solvent_Resist 100.0 1E-30 2.2E-35 230.4 -0.5 171 78-255 1-224 (235)
40 COG4598 HisP ABC-type histidin 100.0 1.4E-29 3E-34 209.5 4.9 175 75-256 4-240 (256)
41 cd03260 ABC_PstB_phosphate_tra 100.0 2.8E-30 6.1E-35 226.4 0.6 170 78-254 1-226 (227)
42 PRK15079 oligopeptide ABC tran 100.0 3.1E-30 6.8E-35 238.2 0.3 180 75-257 6-251 (331)
43 COG1123 ATPase components of v 100.0 7.7E-30 1.7E-34 243.8 2.8 179 75-256 278-518 (539)
44 TIGR01288 nodI ATP-binding ABC 100.0 2E-30 4.4E-35 237.0 -1.2 175 77-258 4-225 (303)
45 PRK11022 dppD dipeptide transp 100.0 4.9E-30 1.1E-34 236.6 -0.0 183 75-257 1-243 (326)
46 PRK11153 metN DL-methionine tr 100.0 2.6E-30 5.7E-35 240.0 -1.9 177 77-256 1-229 (343)
47 PRK11264 putative amino-acid A 100.0 6.8E-30 1.5E-34 227.1 0.6 175 75-256 1-232 (250)
48 PRK13651 cobalt transporter AT 100.0 9.2E-30 2E-34 232.7 1.3 178 77-257 2-254 (305)
49 cd03265 ABC_DrrA DrrA is the A 100.0 3.6E-30 7.8E-35 224.7 -1.6 170 78-254 1-218 (220)
50 PRK10895 lipopolysaccharide AB 100.0 1.2E-29 2.5E-34 224.5 1.5 175 75-256 1-225 (241)
51 TIGR03522 GldA_ABC_ATP gliding 100.0 5.6E-30 1.2E-34 233.9 -0.6 175 77-258 2-222 (301)
52 COG0444 DppD ABC-type dipeptid 100.0 1E-29 2.2E-34 228.1 0.9 181 77-257 1-243 (316)
53 COG4152 ABC-type uncharacteriz 100.0 2.8E-29 6.2E-34 216.4 3.6 176 77-259 2-221 (300)
54 TIGR00960 3a0501s02 Type II (G 100.0 2.3E-29 5E-34 219.0 2.6 159 77-240 1-203 (216)
55 PRK14250 phosphate ABC transpo 100.0 2.1E-29 4.6E-34 223.0 2.5 175 75-256 1-220 (241)
56 COG4525 TauB ABC-type taurine 100.0 3.2E-29 6.9E-34 209.7 3.2 159 75-240 1-198 (259)
57 TIGR02315 ABC_phnC phosphonate 100.0 3.3E-29 7.1E-34 221.7 3.5 172 77-255 1-233 (243)
58 PRK13643 cbiO cobalt transport 99.9 1.2E-29 2.6E-34 230.3 0.6 178 77-257 1-233 (288)
59 cd03256 ABC_PhnC_transporter A 99.9 2.5E-29 5.3E-34 222.1 2.5 172 78-256 1-233 (241)
60 cd03226 ABC_cobalt_CbiO_domain 99.9 4.9E-29 1.1E-33 215.3 4.0 155 79-240 1-191 (205)
61 cd03258 ABC_MetN_methionine_tr 99.9 1.1E-29 2.3E-34 223.6 -0.4 176 77-255 1-228 (233)
62 PRK11308 dppF dipeptide transp 99.9 1.5E-29 3.2E-34 233.5 0.3 180 75-257 3-244 (327)
63 cd03263 ABC_subfamily_A The AB 99.9 6.9E-30 1.5E-34 222.8 -1.9 170 78-254 1-218 (220)
64 COG4608 AppF ABC-type oligopep 99.9 1.3E-28 2.7E-33 216.7 6.1 165 75-257 2-199 (268)
65 PRK13634 cbiO cobalt transport 99.9 2.2E-29 4.7E-34 228.9 1.3 177 77-256 2-234 (290)
66 cd03224 ABC_TM1139_LivF_branch 99.9 1.8E-29 3.9E-34 220.4 0.6 171 78-255 1-219 (222)
67 PRK13637 cbiO cobalt transport 99.9 1.9E-29 4E-34 229.0 0.7 178 77-257 2-234 (287)
68 cd03218 ABC_YhbG The ABC trans 99.9 1.5E-29 3.2E-34 222.4 -0.0 171 78-255 1-220 (232)
69 PRK13641 cbiO cobalt transport 99.9 2.3E-29 5E-34 228.4 1.1 178 77-257 2-234 (287)
70 PRK14247 phosphate ABC transpo 99.9 3.5E-29 7.6E-34 222.6 2.2 175 75-256 1-233 (250)
71 cd03235 ABC_Metallic_Cations A 99.9 9.5E-29 2.1E-33 214.7 4.8 153 79-240 1-197 (213)
72 PRK11831 putative ABC transpor 99.9 1.5E-29 3.2E-34 227.6 -0.3 175 75-256 5-232 (269)
73 cd03219 ABC_Mj1267_LivG_branch 99.9 1.2E-29 2.5E-34 223.6 -1.0 171 78-255 1-230 (236)
74 PRK13548 hmuV hemin importer A 99.9 3.2E-29 6.9E-34 224.1 1.7 174 77-257 2-230 (258)
75 cd03259 ABC_Carb_Solutes_like 99.9 1E-29 2.3E-34 220.7 -1.6 156 78-240 1-196 (213)
76 PRK11614 livF leucine/isoleuci 99.9 1.8E-29 3.9E-34 222.8 -0.3 175 75-256 3-225 (237)
77 PRK13647 cbiO cobalt transport 99.9 1.9E-29 4E-34 227.6 -0.2 172 77-255 4-225 (274)
78 cd03296 ABC_CysA_sulfate_impor 99.9 1.3E-29 2.8E-34 224.0 -1.2 173 77-256 2-225 (239)
79 PRK15093 antimicrobial peptide 99.9 2.2E-29 4.7E-34 232.8 0.2 183 75-257 1-248 (330)
80 PRK14273 phosphate ABC transpo 99.9 4.6E-29 9.9E-34 222.4 2.2 175 75-256 5-237 (254)
81 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 3.5E-29 7.6E-34 218.0 1.1 159 78-239 1-205 (218)
82 TIGR00972 3a0107s01c2 phosphat 99.9 2.2E-29 4.8E-34 223.6 -0.3 173 77-256 1-231 (247)
83 COG3845 ABC-type uncharacteriz 99.9 2.8E-28 6.1E-33 228.1 7.0 158 76-240 3-205 (501)
84 PRK13638 cbiO cobalt transport 99.9 2.9E-29 6.3E-34 225.9 0.3 173 77-256 1-224 (271)
85 PRK13646 cbiO cobalt transport 99.9 4.3E-29 9.4E-34 226.5 1.4 178 77-257 2-235 (286)
86 PRK09473 oppD oligopeptide tra 99.9 3.1E-29 6.7E-34 231.6 0.2 181 74-257 9-251 (330)
87 PRK11231 fecE iron-dicitrate t 99.9 9E-29 1.9E-33 220.7 3.0 174 77-257 2-227 (255)
88 TIGR03411 urea_trans_UrtD urea 99.9 7.3E-29 1.6E-33 219.4 2.3 173 77-256 2-230 (242)
89 TIGR03410 urea_trans_UrtE urea 99.9 2.7E-29 5.8E-34 220.6 -0.8 173 78-257 1-221 (230)
90 PRK13644 cbiO cobalt transport 99.9 3.7E-29 8E-34 225.6 0.0 174 77-257 1-224 (274)
91 PRK14267 phosphate ABC transpo 99.9 5.6E-29 1.2E-33 221.6 1.1 175 75-256 2-236 (253)
92 PRK13652 cbiO cobalt transport 99.9 3.5E-29 7.6E-34 226.1 -0.3 176 75-257 1-227 (277)
93 PRK09493 glnQ glutamine ABC tr 99.9 3.4E-29 7.4E-34 221.4 -0.4 173 77-256 1-224 (240)
94 PRK11247 ssuB aliphatic sulfon 99.9 4.4E-29 9.5E-34 223.1 -0.1 167 76-251 11-217 (257)
95 PRK13631 cbiO cobalt transport 99.9 6.8E-29 1.5E-33 228.4 1.1 178 76-256 20-264 (320)
96 PRK13650 cbiO cobalt transport 99.9 7.1E-29 1.5E-33 224.3 1.2 177 77-257 4-229 (279)
97 PRK11124 artP arginine transpo 99.9 6.8E-29 1.5E-33 219.7 1.0 172 77-255 2-228 (242)
98 TIGR01186 proV glycine betaine 99.9 2.3E-29 5E-34 234.5 -2.2 166 85-257 1-219 (363)
99 PRK10575 iron-hydroxamate tran 99.9 1.3E-28 2.8E-33 221.0 2.6 174 76-256 10-236 (265)
100 PRK13636 cbiO cobalt transport 99.9 4.5E-29 9.8E-34 226.0 -0.3 175 76-257 4-231 (283)
101 cd03301 ABC_MalK_N The N-termi 99.9 2E-29 4.2E-34 218.9 -2.7 156 78-240 1-196 (213)
102 PRK14248 phosphate ABC transpo 99.9 1.1E-28 2.3E-33 221.8 1.9 179 74-256 18-251 (268)
103 TIGR01188 drrA daunorubicin re 99.9 3.7E-29 8.1E-34 228.6 -1.1 167 85-258 1-214 (302)
104 cd03266 ABC_NatA_sodium_export 99.9 2.5E-29 5.4E-34 219.0 -2.2 161 77-240 1-201 (218)
105 PRK14268 phosphate ABC transpo 99.9 7.5E-29 1.6E-33 221.6 0.7 175 75-256 10-241 (258)
106 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 4.1E-29 8.8E-34 220.4 -1.0 174 77-257 1-221 (236)
107 COG1123 ATPase components of v 99.9 1.2E-28 2.6E-33 235.7 2.1 179 76-257 4-244 (539)
108 cd03268 ABC_BcrA_bacitracin_re 99.9 2.4E-29 5.2E-34 217.7 -2.5 156 78-240 1-191 (208)
109 PRK10070 glycine betaine trans 99.9 3.8E-29 8.2E-34 235.7 -1.4 172 78-256 29-253 (400)
110 TIGR02673 FtsE cell division A 99.9 1.7E-28 3.6E-33 213.2 2.6 157 77-240 1-202 (214)
111 PRK14253 phosphate ABC transpo 99.9 1.5E-28 3.3E-33 218.4 2.2 174 75-255 1-231 (249)
112 PRK10253 iron-enterobactin tra 99.9 2.1E-28 4.5E-33 219.7 3.1 175 76-257 6-233 (265)
113 PRK10908 cell division protein 99.9 1.9E-28 4E-33 214.2 2.4 157 77-240 1-202 (222)
114 cd03257 ABC_NikE_OppD_transpor 99.9 7.1E-29 1.5E-33 217.3 -0.2 161 77-240 1-211 (228)
115 PRK11300 livG leucine/isoleuci 99.9 1.1E-28 2.4E-33 219.9 0.9 172 77-255 5-241 (255)
116 PRK10619 histidine/lysine/argi 99.9 9.4E-29 2E-33 220.8 0.4 173 77-256 5-240 (257)
117 PRK14262 phosphate ABC transpo 99.9 1.1E-28 2.4E-33 219.4 0.8 175 75-256 1-233 (250)
118 PRK13635 cbiO cobalt transport 99.9 8.3E-29 1.8E-33 223.9 -0.0 176 76-256 4-228 (279)
119 COG1134 TagH ABC-type polysacc 99.9 3E-28 6.6E-33 210.8 3.4 160 93-261 39-240 (249)
120 PRK14274 phosphate ABC transpo 99.9 1.7E-28 3.6E-33 219.4 1.7 178 75-256 10-242 (259)
121 cd03225 ABC_cobalt_CbiO_domain 99.9 2E-28 4.4E-33 212.2 2.2 155 79-240 1-199 (211)
122 PRK14242 phosphate transporter 99.9 1.6E-28 3.4E-33 218.8 1.4 178 75-256 4-236 (253)
123 cd03269 ABC_putative_ATPase Th 99.9 1.6E-28 3.5E-33 212.8 1.5 155 78-240 1-193 (210)
124 PRK13543 cytochrome c biogenes 99.9 2.8E-28 6.1E-33 212.2 2.9 159 75-240 9-202 (214)
125 PRK13633 cobalt transporter AT 99.9 1.1E-28 2.4E-33 223.1 0.3 179 76-257 3-233 (280)
126 PRK11144 modC molybdate transp 99.9 6.6E-29 1.4E-33 231.4 -1.4 171 77-257 1-218 (352)
127 PRK14235 phosphate transporter 99.9 2E-28 4.4E-33 220.0 1.7 175 75-256 17-250 (267)
128 PRK11629 lolD lipoprotein tran 99.9 1.8E-28 3.8E-33 216.0 1.1 162 76-240 4-211 (233)
129 PRK14240 phosphate transporter 99.9 1.5E-28 3.2E-33 218.6 0.6 177 76-256 2-233 (250)
130 cd03252 ABCC_Hemolysin The ABC 99.9 1.9E-28 4.1E-33 216.2 1.2 176 78-258 1-226 (237)
131 COG0488 Uup ATPase components 99.9 3.9E-28 8.5E-33 235.1 3.5 193 38-240 263-501 (530)
132 PRK14270 phosphate ABC transpo 99.9 1.9E-28 4.1E-33 218.0 1.2 174 76-256 3-234 (251)
133 PRK15439 autoinducer 2 ABC tra 99.9 1.8E-28 3.8E-33 239.0 1.1 175 75-256 9-228 (510)
134 PRK10762 D-ribose transporter 99.9 2E-28 4.3E-33 238.2 1.3 173 76-255 3-228 (501)
135 cd03264 ABC_drug_resistance_li 99.9 5.9E-29 1.3E-33 215.7 -2.2 155 78-240 1-194 (211)
136 PRK11248 tauB taurine transpor 99.9 1.8E-28 3.9E-33 218.9 0.7 155 77-240 1-194 (255)
137 cd03251 ABCC_MsbA MsbA is an e 99.9 3E-28 6.5E-33 214.4 2.0 174 78-256 1-224 (234)
138 TIGR03005 ectoine_ehuA ectoine 99.9 9.8E-29 2.1E-33 220.0 -1.2 172 78-256 1-235 (252)
139 PRK13649 cbiO cobalt transport 99.9 2.1E-28 4.6E-33 221.2 0.9 178 77-257 2-234 (280)
140 cd03293 ABC_NrtD_SsuB_transpor 99.9 2E-28 4.3E-33 213.8 0.6 158 78-240 1-197 (220)
141 PRK09984 phosphonate/organopho 99.9 4E-28 8.7E-33 217.3 2.5 173 76-255 3-240 (262)
142 COG2274 SunT ABC-type bacterio 99.9 7E-28 1.5E-32 240.2 4.5 176 77-258 471-697 (709)
143 cd03262 ABC_HisP_GlnQ_permease 99.9 4.6E-28 9.9E-33 210.2 2.7 156 78-240 1-200 (213)
144 PRK09700 D-allose transporter 99.9 4.1E-28 8.9E-33 236.5 2.6 174 76-256 4-233 (510)
145 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.7E-28 3.6E-33 217.3 -0.2 171 78-255 1-223 (242)
146 PRK14259 phosphate ABC transpo 99.9 5.7E-28 1.2E-32 217.3 3.2 178 76-257 12-253 (269)
147 TIGR02211 LolD_lipo_ex lipopro 99.9 2.8E-28 6.2E-33 212.7 1.2 160 77-239 1-206 (221)
148 PRK13549 xylose transporter AT 99.9 3.2E-28 6.8E-33 237.1 1.6 173 76-255 4-230 (506)
149 PRK14245 phosphate ABC transpo 99.9 2.6E-28 5.6E-33 217.1 0.9 175 76-257 2-234 (250)
150 PRK14239 phosphate transporter 99.9 2.5E-28 5.5E-33 217.2 0.7 174 76-256 4-235 (252)
151 COG4674 Uncharacterized ABC-ty 99.9 4.5E-28 9.8E-33 202.7 2.2 173 76-255 4-233 (249)
152 PRK15112 antimicrobial peptide 99.9 2.5E-28 5.5E-33 219.3 0.4 177 77-256 4-238 (267)
153 PRK14241 phosphate transporter 99.9 3.7E-28 8.1E-33 217.1 1.4 173 77-256 4-241 (258)
154 PRK14269 phosphate ABC transpo 99.9 3.9E-28 8.5E-33 215.5 1.6 176 77-256 2-229 (246)
155 PRK14272 phosphate ABC transpo 99.9 3E-28 6.6E-33 216.7 0.8 173 77-256 4-235 (252)
156 PRK13645 cbiO cobalt transport 99.9 3E-28 6.5E-33 221.3 0.6 177 77-256 6-239 (289)
157 PRK10744 pstB phosphate transp 99.9 4.5E-28 9.8E-33 216.8 1.7 178 75-256 11-243 (260)
158 PRK13639 cbiO cobalt transport 99.9 2.4E-28 5.2E-33 220.4 -0.1 174 77-257 1-226 (275)
159 PRK13547 hmuV hemin importer A 99.9 4.4E-28 9.6E-33 218.3 1.5 174 77-257 1-244 (272)
160 TIGR02769 nickel_nikE nickel i 99.9 3.3E-28 7.1E-33 218.4 0.6 177 77-256 2-239 (265)
161 cd03254 ABCC_Glucan_exporter_l 99.9 1.1E-27 2.4E-32 210.1 4.0 171 78-255 3-224 (229)
162 cd03294 ABC_Pro_Gly_Bertaine T 99.9 1.8E-28 3.8E-33 220.6 -1.2 171 79-256 26-249 (269)
163 PRK14237 phosphate transporter 99.9 5.5E-28 1.2E-32 217.2 2.0 177 76-256 19-250 (267)
164 PRK13539 cytochrome c biogenes 99.9 4.3E-28 9.3E-33 209.9 1.2 157 77-240 2-192 (207)
165 PRK13538 cytochrome c biogenes 99.9 4.2E-28 9.2E-33 209.5 1.0 157 77-240 1-194 (204)
166 PRK11701 phnK phosphonate C-P 99.9 3.1E-28 6.8E-33 217.6 -0.0 174 76-256 5-240 (258)
167 cd03292 ABC_FtsE_transporter F 99.9 5E-28 1.1E-32 210.1 1.2 156 78-240 1-201 (214)
168 TIGR03873 F420-0_ABC_ATP propo 99.9 5.2E-28 1.1E-32 215.9 1.4 173 78-257 2-226 (256)
169 PRK10584 putative ABC transpor 99.9 5.8E-28 1.3E-32 211.8 1.4 161 76-239 5-211 (228)
170 cd03247 ABCC_cytochrome_bd The 99.9 1.9E-27 4.1E-32 201.1 4.5 138 78-239 1-161 (178)
171 TIGR03415 ABC_choXWV_ATP choli 99.9 1.9E-28 4.1E-33 229.5 -1.9 169 81-256 28-253 (382)
172 PRK10771 thiQ thiamine transpo 99.9 3.6E-28 7.7E-33 213.9 -0.1 171 77-256 1-218 (232)
173 PRK13640 cbiO cobalt transport 99.9 3.5E-28 7.6E-33 220.1 -0.1 176 77-257 5-232 (282)
174 KOG0058 Peptide exporter, ABC 99.9 2.1E-27 4.6E-32 230.7 5.3 178 77-258 465-692 (716)
175 COG4619 ABC-type uncharacteriz 99.9 6.1E-28 1.3E-32 197.6 1.2 157 77-240 3-199 (223)
176 PRK15056 manganese/iron transp 99.9 8.1E-28 1.8E-32 216.6 2.1 173 77-256 6-229 (272)
177 PRK10938 putative molybdenum t 99.9 5.4E-28 1.2E-32 234.6 1.0 175 75-256 1-223 (490)
178 PRK10247 putative ABC transpor 99.9 1.6E-27 3.4E-32 209.0 3.9 157 76-239 6-202 (225)
179 PRK14275 phosphate ABC transpo 99.9 6.1E-28 1.3E-32 219.0 1.3 178 75-256 37-269 (286)
180 PRK10419 nikE nickel transport 99.9 6.3E-28 1.4E-32 216.9 1.2 179 75-256 1-240 (268)
181 PRK10261 glutathione transport 99.9 4.3E-28 9.3E-33 241.3 -0.0 178 76-256 312-552 (623)
182 PRK11147 ABC transporter ATPas 99.9 1.4E-27 3E-32 238.2 3.6 151 75-240 317-502 (635)
183 TIGR01978 sufC FeS assembly AT 99.9 4.8E-28 1E-32 214.1 0.2 171 78-255 1-232 (243)
184 PRK14243 phosphate transporter 99.9 1.2E-27 2.6E-32 214.7 2.8 177 76-256 9-247 (264)
185 COG1129 MglA ABC-type sugar tr 99.9 1.1E-27 2.5E-32 227.5 2.7 170 75-251 6-228 (500)
186 PRK14271 phosphate ABC transpo 99.9 8E-28 1.7E-32 217.2 1.5 175 76-257 20-251 (276)
187 PRK13632 cbiO cobalt transport 99.9 4.5E-28 9.7E-33 218.2 -0.2 174 76-256 6-230 (271)
188 PRK14251 phosphate ABC transpo 99.9 7.5E-28 1.6E-32 214.2 1.2 176 77-256 4-234 (251)
189 PRK14249 phosphate ABC transpo 99.9 9.3E-28 2E-32 213.6 1.6 173 77-256 4-234 (251)
190 cd03228 ABCC_MRP_Like The MRP 99.9 3.6E-27 7.8E-32 198.3 5.0 135 78-239 1-159 (171)
191 TIGR02323 CP_lyasePhnK phospho 99.9 5.3E-28 1.2E-32 215.4 -0.1 174 76-256 2-237 (253)
192 TIGR02142 modC_ABC molybdenum 99.9 3.5E-28 7.5E-33 226.8 -1.5 166 82-256 4-220 (354)
193 PRK14256 phosphate ABC transpo 99.9 8.9E-28 1.9E-32 213.9 1.1 176 77-256 4-235 (252)
194 PRK10261 glutathione transport 99.9 7.4E-28 1.6E-32 239.6 0.6 179 75-256 10-257 (623)
195 cd03213 ABCG_EPDR ABCG transpo 99.9 6.7E-28 1.5E-32 206.8 0.2 146 77-239 3-176 (194)
196 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 2.8E-27 6.2E-32 208.8 4.2 175 78-256 1-225 (238)
197 PRK14261 phosphate ABC transpo 99.9 1E-27 2.2E-32 213.6 1.3 176 76-256 5-236 (253)
198 TIGR03608 L_ocin_972_ABC putat 99.9 1.8E-27 3.9E-32 205.4 2.7 152 80-238 1-197 (206)
199 cd03229 ABC_Class3 This class 99.9 1.6E-27 3.5E-32 201.7 2.3 137 78-240 1-166 (178)
200 PRK13648 cbiO cobalt transport 99.9 8.2E-28 1.8E-32 216.2 0.4 177 76-257 6-231 (269)
201 PRK14265 phosphate ABC transpo 99.9 1.9E-27 4.1E-32 214.5 2.7 178 75-256 18-257 (274)
202 cd03230 ABC_DR_subfamily_A Thi 99.9 1.7E-27 3.8E-32 200.5 2.3 135 78-240 1-160 (173)
203 PRK13540 cytochrome c biogenes 99.9 2.1E-27 4.5E-32 204.6 2.7 157 77-240 1-192 (200)
204 PRK14255 phosphate ABC transpo 99.9 8.6E-28 1.9E-32 213.9 0.4 176 76-256 4-235 (252)
205 PRK09544 znuC high-affinity zi 99.9 1.6E-27 3.6E-32 212.3 1.9 166 76-256 3-208 (251)
206 cd03248 ABCC_TAP TAP, the Tran 99.9 1.4E-26 3E-31 202.9 7.6 160 76-239 10-213 (226)
207 cd03246 ABCC_Protease_Secretio 99.9 3.3E-27 7.2E-32 198.8 3.4 134 78-238 1-159 (173)
208 cd03223 ABCD_peroxisomal_ALDP 99.9 4.7E-27 1E-31 196.8 4.3 131 78-238 1-151 (166)
209 PRK14254 phosphate ABC transpo 99.9 1.1E-27 2.4E-32 217.2 0.4 177 75-255 37-267 (285)
210 PRK13642 cbiO cobalt transport 99.9 1E-27 2.2E-32 216.6 0.1 177 77-257 4-229 (277)
211 cd03298 ABC_ThiQ_thiamine_tran 99.9 7.8E-28 1.7E-32 208.6 -0.7 154 78-240 1-194 (211)
212 PRK14260 phosphate ABC transpo 99.9 1.5E-27 3.3E-32 213.3 1.2 175 75-256 5-242 (259)
213 cd03253 ABCC_ATM1_transporter 99.9 3.2E-27 7E-32 208.0 3.1 172 78-256 1-223 (236)
214 PRK14236 phosphate transporter 99.9 1.8E-27 4E-32 214.3 1.4 178 75-256 23-255 (272)
215 TIGR03740 galliderm_ABC gallid 99.9 2.7E-28 5.8E-33 213.4 -4.0 169 78-254 1-210 (223)
216 PRK10418 nikD nickel transport 99.9 1.4E-27 3E-32 212.9 0.3 172 77-256 4-229 (254)
217 PRK14238 phosphate transporter 99.9 1.7E-27 3.6E-32 214.5 0.7 178 75-256 22-254 (271)
218 cd03215 ABC_Carb_Monos_II This 99.9 9.7E-27 2.1E-31 197.6 5.4 137 76-240 3-169 (182)
219 cd03231 ABC_CcmA_heme_exporter 99.9 3.1E-27 6.6E-32 203.7 1.9 156 78-240 1-190 (201)
220 cd03217 ABC_FeS_Assembly ABC-t 99.9 2.4E-27 5.3E-32 204.2 1.2 155 78-256 1-192 (200)
221 cd03244 ABCC_MRP_domain2 Domai 99.9 3.4E-27 7.3E-32 205.9 2.1 158 78-240 3-203 (221)
222 cd03233 ABC_PDR_domain1 The pl 99.9 2.1E-27 4.6E-32 205.0 0.6 156 77-240 3-185 (202)
223 cd03369 ABCC_NFT1 Domain 2 of 99.9 3.1E-27 6.7E-32 204.4 1.6 159 77-240 6-189 (207)
224 TIGR02633 xylG D-xylose ABC tr 99.9 3.3E-27 7.2E-32 229.6 1.5 172 77-255 1-228 (500)
225 PRK11288 araG L-arabinose tran 99.9 1.1E-26 2.4E-31 226.0 5.1 169 75-250 2-222 (501)
226 PRK11819 putative ABC transpor 99.9 5.6E-27 1.2E-31 230.7 2.6 166 75-255 4-248 (556)
227 KOG0055 Multidrug/pheromone ex 99.9 1.2E-26 2.6E-31 236.7 4.9 177 77-258 350-577 (1228)
228 PRK10636 putative ABC transpor 99.9 4.1E-27 8.9E-32 234.7 1.4 168 75-257 310-517 (638)
229 cd03232 ABC_PDR_domain2 The pl 99.9 1.1E-26 2.4E-31 198.9 3.8 143 77-237 3-170 (192)
230 cd03300 ABC_PotA_N PotA is an 99.9 1.3E-27 2.8E-32 210.4 -2.0 172 78-256 1-219 (232)
231 PRK13549 xylose transporter AT 99.9 3.6E-27 7.9E-32 229.6 0.7 176 76-255 258-492 (506)
232 cd03245 ABCC_bacteriocin_expor 99.9 9.5E-27 2.1E-31 203.0 3.2 156 78-238 3-202 (220)
233 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 9.7E-27 2.1E-31 235.1 3.7 176 77-257 477-700 (710)
234 PRK14266 phosphate ABC transpo 99.9 5.9E-27 1.3E-31 208.3 1.9 178 75-256 1-233 (250)
235 TIGR01277 thiQ thiamine ABC tr 99.9 2.6E-27 5.6E-32 205.8 -0.5 154 78-240 1-194 (213)
236 cd03216 ABC_Carb_Monos_I This 99.9 1E-26 2.2E-31 194.2 2.7 123 78-240 1-147 (163)
237 PRK15134 microcin C ABC transp 99.9 5.3E-27 1.2E-31 229.6 1.2 178 76-256 4-245 (529)
238 PRK14246 phosphate ABC transpo 99.9 7.7E-27 1.7E-31 208.7 2.0 174 76-256 9-240 (257)
239 PRK15064 ABC transporter ATP-b 99.9 6.3E-27 1.4E-31 229.1 1.3 165 77-256 1-241 (530)
240 TIGR02324 CP_lyasePhnL phospho 99.9 2.1E-26 4.5E-31 201.4 4.4 161 77-240 1-214 (224)
241 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 9.2E-27 2E-31 234.4 2.4 176 77-257 451-673 (686)
242 cd03289 ABCC_CFTR2 The CFTR su 99.9 8.1E-27 1.8E-31 210.3 1.8 172 78-257 3-225 (275)
243 PRK14264 phosphate ABC transpo 99.9 8.4E-27 1.8E-31 213.3 1.9 177 76-256 44-288 (305)
244 TIGR00968 3a0106s01 sulfate AB 99.9 2.3E-27 5.1E-32 209.4 -1.7 172 78-256 1-219 (237)
245 TIGR03269 met_CoM_red_A2 methy 99.9 7.6E-27 1.6E-31 228.1 1.6 179 75-256 277-516 (520)
246 PRK14257 phosphate ABC transpo 99.9 5.5E-27 1.2E-31 216.5 0.6 179 76-256 79-312 (329)
247 PRK10982 galactose/methyl gala 99.9 6.7E-27 1.5E-31 226.9 1.1 169 80-255 1-221 (491)
248 cd03297 ABC_ModC_molybdenum_tr 99.9 3E-27 6.5E-32 205.5 -1.2 152 78-240 2-197 (214)
249 TIGR01189 ccmA heme ABC export 99.9 3.5E-27 7.5E-32 202.8 -0.8 154 78-238 1-190 (198)
250 TIGR03269 met_CoM_red_A2 methy 99.9 5.6E-27 1.2E-31 229.0 0.4 174 78-258 1-259 (520)
251 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 3E-27 6.5E-32 207.1 -1.4 150 78-240 23-207 (224)
252 COG4161 ArtP ABC-type arginine 99.9 5.1E-26 1.1E-30 185.4 5.8 172 77-255 2-228 (242)
253 CHL00131 ycf16 sulfate ABC tra 99.9 6.4E-27 1.4E-31 208.2 0.6 171 76-253 6-237 (252)
254 cd03299 ABC_ModC_like Archeal 99.9 2.2E-27 4.7E-32 209.4 -2.7 171 78-256 1-218 (235)
255 PRK14258 phosphate ABC transpo 99.9 7.9E-27 1.7E-31 208.9 0.9 174 76-256 6-244 (261)
256 PRK14252 phosphate ABC transpo 99.9 1E-26 2.2E-31 208.7 1.6 174 76-256 15-248 (265)
257 PRK15134 microcin C ABC transp 99.9 4.8E-27 1E-31 229.9 -0.7 177 76-256 274-514 (529)
258 PRK09700 D-allose transporter 99.9 1.5E-26 3.2E-31 225.5 2.4 168 76-252 264-493 (510)
259 TIGR02982 heterocyst_DevA ABC 99.9 1.5E-26 3.2E-31 202.0 2.1 159 77-238 1-205 (220)
260 PRK14263 phosphate ABC transpo 99.9 1.2E-26 2.5E-31 208.0 1.1 174 76-256 7-244 (261)
261 PRK15064 ABC transporter ATP-b 99.9 1.7E-26 3.7E-31 226.1 2.3 167 76-257 318-525 (530)
262 PRK13541 cytochrome c biogenes 99.9 1.2E-26 2.6E-31 199.0 1.1 155 77-240 1-188 (195)
263 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 2.1E-26 4.6E-31 226.4 2.8 164 77-255 4-246 (552)
264 PRK14244 phosphate ABC transpo 99.9 1E-26 2.2E-31 207.0 0.4 175 78-256 6-236 (251)
265 TIGR03375 type_I_sec_LssB type 99.9 4.2E-26 9.1E-31 229.9 4.8 177 77-258 463-689 (694)
266 PRK11176 lipid transporter ATP 99.9 3.7E-26 8.1E-31 225.9 4.2 177 77-258 341-568 (582)
267 cd03214 ABC_Iron-Siderophores_ 99.9 2.1E-26 4.5E-31 195.2 1.7 139 79-240 1-163 (180)
268 cd03234 ABCG_White The White s 99.9 1.8E-26 4E-31 202.2 1.5 164 77-240 3-209 (226)
269 TIGR01166 cbiO cobalt transpor 99.9 1.3E-26 2.7E-31 198.0 0.1 139 96-237 7-189 (190)
270 cd03288 ABCC_SUR2 The SUR doma 99.9 4.4E-26 9.5E-31 203.7 3.6 178 75-257 17-243 (257)
271 cd03267 ABC_NatA_like Similar 99.9 8E-27 1.7E-31 205.9 -1.6 142 96-240 36-219 (236)
272 COG4148 ModC ABC-type molybdat 99.9 1E-26 2.3E-31 204.0 -1.0 168 82-258 5-219 (352)
273 KOG0057 Mitochondrial Fe/S clu 99.9 8.7E-26 1.9E-30 213.3 5.2 174 77-257 351-574 (591)
274 COG4172 ABC-type uncharacteriz 99.9 4.2E-26 9E-31 208.7 2.9 178 75-256 274-515 (534)
275 TIGR01257 rim_protein retinal- 99.9 1.7E-26 3.6E-31 249.1 -0.5 178 76-258 1936-2160(2272)
276 TIGR00958 3a01208 Conjugate Tr 99.9 6.5E-26 1.4E-30 228.9 3.8 177 77-257 478-702 (711)
277 TIGR01193 bacteriocin_ABC ABC- 99.9 7.2E-26 1.6E-30 228.6 4.0 175 77-257 473-697 (708)
278 COG1132 MdlB ABC-type multidru 99.9 7.4E-26 1.6E-30 223.2 3.8 174 77-258 328-553 (567)
279 cd03250 ABCC_MRP_domain1 Domai 99.9 7.8E-26 1.7E-30 195.2 3.2 150 78-240 1-193 (204)
280 PRK11160 cysteine/glutathione 99.9 9.9E-26 2.1E-30 222.7 4.2 176 77-257 338-562 (574)
281 PRK10790 putative multidrug tr 99.9 8.2E-26 1.8E-30 224.0 3.5 174 77-256 340-562 (592)
282 PRK09580 sufC cysteine desulfu 99.9 1.8E-25 3.9E-30 198.3 5.1 172 77-255 1-233 (248)
283 TIGR02633 xylG D-xylose ABC tr 99.9 1.6E-25 3.5E-30 217.7 4.9 158 76-240 256-468 (500)
284 PRK11174 cysteine/glutathione 99.9 9.1E-26 2E-30 223.4 2.9 173 77-257 349-572 (588)
285 TIGR01184 ntrCD nitrate transp 99.9 3E-26 6.5E-31 201.5 -0.8 153 97-254 1-201 (230)
286 TIGR01257 rim_protein retinal- 99.9 4.8E-26 1E-30 245.5 -0.0 176 76-258 927-1150(2272)
287 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1.7E-25 3.7E-30 183.2 3.1 115 78-240 1-132 (144)
288 PRK13657 cyclic beta-1,2-gluca 99.9 1.4E-25 3.1E-30 222.1 3.2 174 77-256 334-557 (588)
289 TIGR02868 CydC thiol reductant 99.9 3.2E-25 6.9E-30 217.0 5.5 153 77-235 334-529 (529)
290 COG0396 sufC Cysteine desulfur 99.9 2.9E-25 6.3E-30 190.3 4.5 178 75-258 1-234 (251)
291 PRK11819 putative ABC transpor 99.9 2.8E-25 6E-30 218.7 4.8 150 76-240 323-507 (556)
292 COG1119 ModF ABC-type molybden 99.9 1.2E-25 2.5E-30 194.6 1.8 159 75-240 29-238 (257)
293 PRK11288 araG L-arabinose tran 99.9 1.2E-25 2.6E-30 218.7 2.1 172 76-258 256-486 (501)
294 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 2.3E-25 5.1E-30 219.0 4.1 151 75-240 320-505 (552)
295 PRK03695 vitamin B12-transport 99.9 9.6E-26 2.1E-30 200.5 1.1 166 79-256 2-221 (248)
296 PRK13545 tagH teichoic acids e 99.9 8E-26 1.7E-30 217.0 0.5 171 76-257 20-232 (549)
297 PRK10762 D-ribose transporter 99.9 1.1E-25 2.3E-30 219.1 1.2 168 76-255 256-482 (501)
298 cd03290 ABCC_SUR1_N The SUR do 99.9 1.9E-25 4.1E-30 194.7 2.6 155 79-239 2-206 (218)
299 TIGR01192 chvA glucan exporter 99.9 2.3E-25 4.9E-30 220.5 3.4 175 77-257 334-558 (585)
300 COG4987 CydC ABC-type transpor 99.9 4.4E-25 9.4E-30 208.4 5.0 176 77-257 336-561 (573)
301 PRK10636 putative ABC transpor 99.9 1.2E-25 2.6E-30 224.2 0.9 172 77-255 1-234 (638)
302 TIGR02203 MsbA_lipidA lipid A 99.9 4.4E-25 9.6E-30 217.7 4.6 175 77-256 330-555 (571)
303 PRK11147 ABC transporter ATPas 99.9 3.7E-25 8.1E-30 220.8 4.1 173 75-255 1-241 (635)
304 TIGR02204 MsbA_rel ABC transpo 99.9 3.9E-25 8.5E-30 218.3 4.0 177 77-257 337-563 (576)
305 COG1101 PhnK ABC-type uncharac 99.9 1.1E-25 2.4E-30 191.1 -0.1 169 77-248 1-229 (263)
306 TIGR01846 type_I_sec_HlyB type 99.9 4.1E-25 8.9E-30 222.7 4.1 176 77-257 455-680 (694)
307 COG4586 ABC-type uncharacteriz 99.9 6.6E-25 1.4E-29 192.1 4.8 181 77-260 3-249 (325)
308 PRK10938 putative molybdenum t 99.9 5.5E-25 1.2E-29 213.5 4.7 159 75-240 258-467 (490)
309 COG4988 CydD ABC-type transpor 99.9 5.3E-25 1.1E-29 210.2 4.3 176 77-258 320-544 (559)
310 PRK10789 putative multidrug tr 99.9 3.9E-25 8.4E-30 218.2 3.4 176 77-257 313-538 (569)
311 TIGR02770 nickel_nikD nickel i 99.9 1.3E-25 2.9E-30 197.3 -0.1 158 96-256 1-214 (230)
312 COG4172 ABC-type uncharacteriz 99.9 4.4E-25 9.6E-30 202.1 3.3 183 75-257 4-247 (534)
313 PRK15439 autoinducer 2 ABC tra 99.9 1.7E-25 3.6E-30 218.1 0.4 170 75-256 266-491 (510)
314 PRK13546 teichoic acids export 99.9 1.9E-25 4.1E-30 200.4 0.4 155 94-258 37-233 (264)
315 TIGR01842 type_I_sec_PrtD type 99.9 4.9E-25 1.1E-29 216.4 3.3 175 77-256 316-541 (544)
316 PRK10982 galactose/methyl gala 99.9 7.2E-25 1.6E-29 212.8 3.7 168 76-252 249-475 (491)
317 KOG0055 Multidrug/pheromone ex 99.9 1.5E-24 3.3E-29 221.4 4.5 175 77-257 987-1213(1228)
318 TIGR02857 CydD thiol reductant 99.9 2.4E-24 5.2E-29 210.8 5.7 158 77-239 320-521 (529)
319 COG4107 PhnK ABC-type phosphon 99.9 1.1E-24 2.4E-29 179.6 2.5 175 75-256 4-240 (258)
320 PRK15177 Vi polysaccharide exp 99.9 9.1E-25 2E-29 190.1 1.5 151 96-256 2-191 (213)
321 PLN03211 ABC transporter G-25; 99.9 1.4E-24 3E-29 216.8 3.0 171 79-257 70-296 (659)
322 COG4167 SapF ABC-type antimicr 99.9 1.5E-24 3.3E-29 180.1 2.4 180 75-257 2-239 (267)
323 COG0488 Uup ATPase components 99.9 5.2E-24 1.1E-28 206.4 6.3 152 75-240 1-215 (530)
324 cd03222 ABC_RNaseL_inhibitor T 99.9 2.2E-24 4.8E-29 182.2 3.1 113 81-240 4-137 (177)
325 COG4136 ABC-type uncharacteriz 99.9 1.3E-24 2.9E-29 175.1 1.5 160 77-240 2-200 (213)
326 cd03291 ABCC_CFTR1 The CFTR su 99.9 2.8E-24 6.1E-29 194.5 3.4 163 75-256 37-246 (282)
327 PLN03130 ABC transporter C fam 99.9 2.3E-24 5.1E-29 232.3 3.2 176 77-257 1237-1461(1622)
328 PLN03232 ABC transporter C fam 99.9 2.2E-24 4.7E-29 231.9 2.8 176 77-257 1234-1458(1495)
329 PTZ00265 multidrug resistance 99.9 7.2E-24 1.6E-28 226.7 5.9 160 77-240 382-645 (1466)
330 PRK13409 putative ATPase RIL; 99.9 3.2E-24 7E-29 211.8 2.8 148 75-240 338-519 (590)
331 PLN03073 ABC transporter F fam 99.9 1.4E-24 3.1E-29 218.1 0.3 166 75-255 506-712 (718)
332 PTZ00265 multidrug resistance 99.9 7.3E-24 1.6E-28 226.7 5.3 177 77-257 1165-1452(1466)
333 KOG0056 Heavy metal exporter H 99.9 5.6E-24 1.2E-28 198.5 3.5 176 77-258 537-762 (790)
334 TIGR03771 anch_rpt_ABC anchore 99.9 9E-24 2E-28 185.0 3.6 150 102-256 1-200 (223)
335 PTZ00243 ABC transporter; Prov 99.9 1.1E-23 2.4E-28 226.7 3.0 176 77-257 1308-1533(1560)
336 PRK10535 macrolide transporter 99.9 2.4E-24 5.2E-29 215.4 -2.0 177 77-256 4-231 (648)
337 TIGR00957 MRP_assoc_pro multi 99.9 1.3E-23 2.7E-28 226.4 3.4 176 77-257 1284-1508(1522)
338 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.5E-23 3.2E-28 173.7 2.7 121 80-240 2-145 (157)
339 cd03237 ABC_RNaseL_inhibitor_d 99.9 2.1E-23 4.6E-28 185.3 2.6 133 96-240 9-181 (246)
340 COG4133 CcmA ABC-type transpor 99.9 2.4E-23 5.2E-28 173.5 2.6 132 77-215 2-156 (209)
341 cd03236 ABC_RNaseL_inhibitor_d 99.9 6.9E-23 1.5E-27 182.9 5.2 153 81-240 4-204 (255)
342 TIGR00956 3a01205 Pleiotropic 99.9 1.1E-23 2.4E-28 224.9 -1.9 177 77-254 759-990 (1394)
343 PRK10522 multidrug transporter 99.9 3.6E-23 7.9E-28 203.4 1.5 166 77-248 322-529 (547)
344 COG4618 ArpD ABC-type protease 99.9 3.2E-22 7E-27 187.8 7.3 177 77-259 334-562 (580)
345 PLN03073 ABC transporter F fam 99.9 1.7E-22 3.7E-27 203.2 5.1 176 75-254 175-428 (718)
346 TIGR00954 3a01203 Peroxysomal 99.9 1.6E-22 3.6E-27 202.4 4.8 149 76-239 450-643 (659)
347 TIGR01194 cyc_pep_trnsptr cycl 99.9 3.2E-22 7E-27 197.0 6.4 160 77-239 337-535 (555)
348 PRK13409 putative ATPase RIL; 99.9 2.7E-22 5.8E-27 198.2 5.6 152 82-240 78-276 (590)
349 TIGR00955 3a01204 The Eye Pigm 99.9 2.4E-22 5.2E-27 200.0 3.9 160 95-257 39-256 (617)
350 TIGR01271 CFTR_protein cystic 99.8 2.5E-22 5.4E-27 215.9 2.4 175 77-257 1217-1440(1490)
351 TIGR00957 MRP_assoc_pro multi 99.8 2.1E-22 4.7E-27 216.9 0.2 166 77-257 636-850 (1522)
352 cd03238 ABC_UvrA The excision 99.8 2.3E-21 4.9E-26 163.8 5.5 123 95-239 9-153 (176)
353 TIGR01187 potA spermidine/putr 99.8 1.1E-22 2.3E-27 187.8 -2.9 143 112-257 1-190 (325)
354 PLN03140 ABC transporter G fam 99.8 3.2E-22 6.9E-27 213.6 -0.8 185 77-262 867-1118(1470)
355 PLN03140 ABC transporter G fam 99.8 2.3E-21 4.9E-26 207.1 5.4 160 94-256 178-426 (1470)
356 PLN03130 ABC transporter C fam 99.8 1.6E-21 3.4E-26 210.6 3.7 167 77-257 614-828 (1622)
357 KOG0927 Predicted transporter 99.8 1.1E-20 2.4E-25 178.5 7.8 159 74-240 386-571 (614)
358 KOG0059 Lipid exporter ABCA1 a 99.8 6.8E-21 1.5E-25 196.0 6.4 176 75-256 562-786 (885)
359 PLN03232 ABC transporter C fam 99.8 2.5E-21 5.4E-26 208.5 3.1 167 77-257 614-828 (1495)
360 TIGR01271 CFTR_protein cystic 99.8 2.2E-21 4.7E-26 208.7 1.1 149 96-257 441-636 (1490)
361 TIGR00956 3a01205 Pleiotropic 99.8 6.2E-21 1.3E-25 203.9 4.4 163 94-256 74-299 (1394)
362 COG5265 ATM1 ABC-type transpor 99.8 1.1E-20 2.3E-25 174.2 4.7 175 77-258 262-487 (497)
363 PF00005 ABC_tran: ABC transpo 99.8 4.9E-22 1.1E-26 160.4 -4.2 117 97-216 1-135 (137)
364 COG4138 BtuD ABC-type cobalami 99.8 1.2E-19 2.6E-24 150.0 8.9 174 77-262 3-226 (248)
365 COG4778 PhnL ABC-type phosphon 99.8 3.1E-19 6.8E-24 146.9 6.7 167 77-247 4-223 (235)
366 PTZ00243 ABC transporter; Prov 99.8 2.9E-20 6.4E-25 200.4 0.0 149 96-257 675-870 (1560)
367 KOG0061 Transporter, ABC super 99.8 1.7E-19 3.7E-24 178.8 5.2 180 78-257 26-260 (613)
368 COG4615 PvdE ABC-type sideroph 99.8 3.5E-19 7.6E-24 163.1 6.8 160 77-248 322-528 (546)
369 PRK09270 nucleoside triphospha 99.8 4.2E-17 9.2E-22 143.4 18.8 179 104-285 30-221 (229)
370 cd02025 PanK Pantothenate kina 99.8 1.9E-17 4.2E-22 144.7 16.4 174 109-285 1-210 (220)
371 TIGR00554 panK_bact pantothena 99.7 6.9E-17 1.5E-21 146.1 16.8 181 105-286 60-279 (290)
372 cd03278 ABC_SMC_barmotin Barmo 99.7 7.9E-19 1.7E-23 151.0 3.3 128 98-239 14-180 (197)
373 KOG0054 Multidrug resistance-a 99.7 4.7E-19 1E-23 184.9 1.9 169 75-257 516-731 (1381)
374 KOG0066 eIF2-interacting prote 99.7 7.5E-19 1.6E-23 162.7 2.2 159 74-240 583-766 (807)
375 KOG2702 Predicted panthothenat 99.7 6.7E-17 1.4E-21 138.6 13.3 182 105-286 117-322 (323)
376 cd03270 ABC_UvrA_I The excisio 99.7 1E-18 2.2E-23 153.4 1.9 29 96-124 10-38 (226)
377 PTZ00301 uridine kinase; Provi 99.7 2.1E-16 4.5E-21 137.1 15.3 173 108-285 4-189 (210)
378 COG0572 Udk Uridine kinase [Nu 99.7 2.2E-16 4.7E-21 136.0 14.9 173 105-285 6-190 (218)
379 KOG0054 Multidrug resistance-a 99.7 4E-18 8.6E-23 178.0 4.5 175 77-258 1138-1363(1381)
380 PF00485 PRK: Phosphoribulokin 99.7 1.6E-16 3.6E-21 136.1 10.4 172 109-286 1-189 (194)
381 KOG0062 ATPase component of AB 99.7 5.9E-17 1.3E-21 152.6 4.9 154 77-240 80-260 (582)
382 PLN02318 phosphoribulokinase/u 99.7 1.6E-15 3.5E-20 146.8 14.7 170 106-284 64-238 (656)
383 KOG0927 Predicted transporter 99.6 9.1E-17 2E-21 152.1 4.7 177 77-257 75-309 (614)
384 TIGR00235 udk uridine kinase. 99.6 4.9E-15 1.1E-19 128.2 14.7 174 104-285 3-188 (207)
385 PRK05439 pantothenate kinase; 99.6 9.3E-15 2E-19 133.2 16.4 181 105-285 84-298 (311)
386 COG1245 Predicted ATPase, RNas 99.6 1.5E-16 3.2E-21 148.2 3.4 149 77-240 342-521 (591)
387 cd03271 ABC_UvrA_II The excisi 99.6 1.6E-16 3.4E-21 142.1 2.6 145 96-240 10-237 (261)
388 KOG0062 ATPase component of AB 99.6 3.7E-16 8.1E-21 147.3 4.4 207 26-240 295-544 (582)
389 cd03272 ABC_SMC3_euk Eukaryoti 99.6 2.9E-16 6.2E-21 138.9 2.8 44 78-131 4-47 (243)
390 PRK05480 uridine/cytidine kina 99.6 5.1E-14 1.1E-18 121.9 15.0 173 105-285 4-188 (209)
391 KOG2355 Predicted ABC-type tra 99.6 1.3E-15 2.9E-20 129.0 4.5 158 77-240 13-213 (291)
392 KOG0065 Pleiotropic drug resis 99.6 1E-15 2.2E-20 157.5 4.2 179 77-256 787-1020(1391)
393 COG4178 ABC-type uncharacteriz 99.6 2.6E-15 5.7E-20 146.0 6.3 154 76-239 391-578 (604)
394 COG4170 SapD ABC-type antimicr 99.6 2.7E-15 5.9E-20 127.6 5.2 183 75-257 1-248 (330)
395 cd03279 ABC_sbcCD SbcCD and ot 99.6 7.9E-16 1.7E-20 133.8 2.0 151 77-240 5-198 (213)
396 cd03274 ABC_SMC4_euk Eukaryoti 99.6 1.1E-15 2.4E-20 133.0 2.0 43 78-130 6-48 (212)
397 cd03240 ABC_Rad50 The catalyti 99.5 4.1E-16 9E-21 134.8 -1.0 130 102-239 18-187 (204)
398 COG1129 MglA ABC-type sugar tr 99.5 1.2E-15 2.6E-20 145.6 1.7 163 75-248 261-481 (500)
399 cd02023 UMPK Uridine monophosp 99.5 2.8E-13 6.1E-18 116.2 15.5 167 109-286 1-182 (198)
400 KOG0060 Long-chain acyl-CoA tr 99.5 1.9E-14 4.1E-19 137.5 5.9 160 76-240 432-632 (659)
401 cd02026 PRK Phosphoribulokinas 99.5 7.5E-13 1.6E-17 119.3 15.1 166 109-284 1-176 (273)
402 cd03276 ABC_SMC6_euk Eukaryoti 99.5 4.4E-14 9.5E-19 121.6 6.4 130 96-240 11-181 (198)
403 cd03273 ABC_SMC2_euk Eukaryoti 99.5 2.4E-14 5.2E-19 127.5 4.1 51 189-239 161-233 (251)
404 COG3845 ABC-type uncharacteriz 99.5 8.3E-14 1.8E-18 131.3 7.6 175 74-254 254-489 (501)
405 COG1072 CoaA Panthothenate kin 99.5 4.1E-13 8.8E-18 118.7 11.2 177 103-280 78-266 (283)
406 PLN02348 phosphoribulokinase 99.5 1.9E-12 4.2E-17 120.7 15.5 172 106-284 48-243 (395)
407 PRK07429 phosphoribulokinase; 99.4 5.1E-12 1.1E-16 116.5 16.0 170 106-285 7-186 (327)
408 PRK00349 uvrA excinuclease ABC 99.4 9.5E-14 2.1E-18 142.9 4.6 70 188-257 824-927 (943)
409 cd03280 ABC_MutS2 MutS2 homolo 99.4 1.9E-13 4.2E-18 117.7 2.8 116 97-238 17-154 (200)
410 PRK00635 excinuclease ABC subu 99.4 1.2E-13 2.7E-18 148.2 1.7 70 188-257 803-906 (1809)
411 TIGR00630 uvra excinuclease AB 99.4 2E-13 4.3E-18 140.3 2.5 41 77-126 612-652 (924)
412 KOG0066 eIF2-interacting prote 99.4 1E-12 2.2E-17 122.4 6.6 159 78-240 265-474 (807)
413 COG2401 ABC-type ATPase fused 99.3 8.8E-13 1.9E-17 122.1 4.8 142 95-240 397-573 (593)
414 cd03282 ABC_MSH4_euk MutS4 hom 99.3 7E-13 1.5E-17 114.6 3.8 120 96-240 18-156 (204)
415 cd02029 PRK_like Phosphoribulo 99.3 3.6E-11 7.7E-16 107.0 14.5 170 109-283 1-200 (277)
416 cd03275 ABC_SMC1_euk Eukaryoti 99.3 1.6E-12 3.5E-17 115.6 5.6 50 190-239 151-223 (247)
417 cd02028 UMPK_like Uridine mono 99.3 2.2E-11 4.7E-16 103.2 12.3 170 109-284 1-179 (179)
418 KOG0064 Peroxisomal long-chain 99.3 1.3E-12 2.9E-17 123.8 4.3 151 78-240 482-674 (728)
419 cd03243 ABC_MutS_homologs The 99.3 6.2E-13 1.3E-17 114.6 0.9 32 100-131 22-53 (202)
420 COG1245 Predicted ATPase, RNas 99.3 3.2E-12 6.9E-17 119.6 4.5 134 104-240 97-278 (591)
421 PRK15453 phosphoribulokinase; 99.3 2.8E-10 6.1E-15 102.0 16.1 173 106-283 4-206 (290)
422 cd03277 ABC_SMC5_euk Eukaryoti 99.2 1.2E-11 2.7E-16 107.6 7.0 53 188-240 120-197 (213)
423 cd03283 ABC_MutS-like MutS-lik 99.2 4.9E-12 1.1E-16 109.0 2.9 35 96-132 16-50 (199)
424 cd00820 PEPCK_HprK Phosphoenol 99.2 3.1E-11 6.8E-16 93.3 4.2 75 95-178 3-81 (107)
425 cd03227 ABC_Class2 ABC-type Cl 99.2 2E-11 4.3E-16 101.7 3.3 108 101-240 15-146 (162)
426 KOG0065 Pleiotropic drug resis 99.1 2.9E-11 6.2E-16 125.2 4.8 164 94-257 128-351 (1391)
427 COG0178 UvrA Excinuclease ATPa 99.1 1.3E-11 2.9E-16 122.2 1.3 69 189-257 817-919 (935)
428 PRK00635 excinuclease ABC subu 99.1 4.2E-11 9.1E-16 129.0 4.4 69 189-257 1694-1796(1809)
429 cd03239 ABC_SMC_head The struc 99.1 1.4E-10 3.1E-15 98.1 4.6 45 195-239 95-162 (178)
430 TIGR02858 spore_III_AA stage I 99.0 2.2E-10 4.7E-15 103.1 5.4 37 108-147 112-149 (270)
431 cd03287 ABC_MSH3_euk MutS3 hom 99.0 5.8E-11 1.3E-15 103.9 1.3 48 96-146 20-68 (222)
432 cd03284 ABC_MutS1 MutS1 homolo 99.0 1.5E-10 3.3E-15 100.9 3.4 35 96-131 20-54 (216)
433 PRK06696 uridine kinase; Valid 99.0 1E-08 2.2E-13 89.8 14.4 172 105-286 20-211 (223)
434 cd03241 ABC_RecN RecN ATPase i 99.0 4.9E-10 1.1E-14 101.3 6.2 34 97-131 12-45 (276)
435 TIGR01069 mutS2 MutS2 family p 99.0 1.9E-10 4.1E-15 117.0 2.9 114 100-239 314-449 (771)
436 cd02024 NRK1 Nicotinamide ribo 99.0 1.9E-09 4.1E-14 91.9 8.2 153 109-269 1-177 (187)
437 TIGR03238 dnd_assoc_3 dnd syst 99.0 2.3E-10 5.1E-15 108.9 2.4 47 96-147 21-69 (504)
438 cd03285 ABC_MSH2_euk MutS2 hom 98.9 3.8E-10 8.2E-15 98.9 3.1 34 96-129 19-52 (222)
439 PRK07667 uridine kinase; Provi 98.9 2.8E-08 6E-13 85.2 13.1 165 106-283 16-193 (193)
440 cd03281 ABC_MSH5_euk MutS5 hom 98.9 1.3E-09 2.9E-14 94.8 3.4 34 96-129 18-51 (213)
441 smart00534 MUTSac ATPase domai 98.8 1.5E-09 3.3E-14 92.3 2.8 105 109-239 1-126 (185)
442 PLN02796 D-glycerate 3-kinase 98.8 1E-08 2.2E-13 94.7 8.2 170 96-269 81-314 (347)
443 KOG0063 RNAse L inhibitor, ABC 98.8 2.4E-09 5.2E-14 99.8 1.4 112 97-215 352-482 (592)
444 TIGR02788 VirB11 P-type DNA tr 98.7 1.2E-08 2.6E-13 93.7 5.3 134 99-260 136-284 (308)
445 PRK08233 hypothetical protein; 98.7 2.7E-07 5.9E-12 77.4 13.2 151 106-285 2-161 (182)
446 PF02463 SMC_N: RecF/RecN/SMC 98.7 1.5E-09 3.2E-14 94.5 -1.6 48 193-240 135-204 (220)
447 PLN03046 D-glycerate 3-kinase; 98.7 3.8E-07 8.3E-12 86.0 14.3 160 106-269 211-426 (460)
448 cd01130 VirB11-like_ATPase Typ 98.6 2.8E-08 6.1E-13 84.5 3.8 45 97-144 15-60 (186)
449 PRK09862 putative ATP-dependen 98.6 3E-08 6.5E-13 96.3 3.9 61 80-147 187-248 (506)
450 cd03286 ABC_MSH6_euk MutS6 hom 98.6 1E-07 2.2E-12 83.3 6.1 36 96-131 19-54 (218)
451 PRK00409 recombination and DNA 98.5 6.7E-08 1.5E-12 98.8 4.1 116 101-240 320-455 (782)
452 PRK06002 fliI flagellum-specif 98.5 7.1E-08 1.5E-12 92.0 3.8 66 75-147 137-206 (450)
453 PRK13695 putative NTPase; Prov 98.5 7.8E-08 1.7E-12 80.8 3.3 24 109-132 2-25 (174)
454 PRK08533 flagellar accessory p 98.5 4.2E-07 9.2E-12 80.0 7.1 52 78-145 8-61 (230)
455 PF13555 AAA_29: P-loop contai 98.4 3.7E-07 8E-12 63.5 4.5 36 97-132 12-48 (62)
456 PRK09825 idnK D-gluconate kina 98.4 9.6E-07 2.1E-11 74.6 7.7 127 106-262 2-135 (176)
457 KOG0063 RNAse L inhibitor, ABC 98.4 2E-07 4.3E-12 87.2 3.1 133 105-240 98-278 (592)
458 PRK07594 type III secretion sy 98.4 2.2E-07 4.7E-12 88.6 3.4 64 76-146 128-192 (433)
459 PRK07196 fliI flagellum-specif 98.4 2.6E-07 5.7E-12 88.0 3.4 42 94-139 143-184 (434)
460 PRK07721 fliI flagellum-specif 98.3 3.7E-07 8.1E-12 87.4 3.9 46 96-145 148-194 (438)
461 cd01128 rho_factor Transcripti 98.3 1.5E-06 3.3E-11 77.4 7.2 31 102-132 11-41 (249)
462 PRK08149 ATP synthase SpaL; Va 98.3 4.8E-07 1E-11 86.1 4.1 51 95-149 140-194 (428)
463 cd01136 ATPase_flagellum-secre 98.3 4.2E-07 9.2E-12 83.7 3.6 45 96-144 59-104 (326)
464 TIGR00767 rho transcription te 98.3 5.7E-07 1.2E-11 84.6 3.7 53 77-132 130-193 (415)
465 PRK06547 hypothetical protein; 98.3 2.8E-05 6E-10 65.5 13.4 57 219-283 107-171 (172)
466 PRK09099 type III secretion sy 98.2 9E-07 1.9E-11 84.6 4.4 48 95-146 152-200 (441)
467 TIGR02546 III_secr_ATP type II 98.2 9.7E-07 2.1E-11 84.3 3.9 46 96-145 135-181 (422)
468 PRK10078 ribose 1,5-bisphospho 98.2 9.8E-07 2.1E-11 75.0 3.3 26 107-132 2-27 (186)
469 TIGR01026 fliI_yscN ATPase Fli 98.2 1.3E-06 2.7E-11 83.8 3.8 47 95-145 152-199 (440)
470 PRK05922 type III secretion sy 98.2 1.5E-06 3.3E-11 82.8 4.1 47 95-145 146-193 (434)
471 PRK06995 flhF flagellar biosyn 98.2 1.5E-06 3.3E-11 83.9 3.9 37 96-132 245-281 (484)
472 TIGR03497 FliI_clade2 flagella 98.1 1.8E-06 3.9E-11 82.1 4.1 49 95-147 126-175 (413)
473 TIGR03498 FliI_clade3 flagella 98.1 1.6E-06 3.4E-11 82.6 3.6 47 96-146 130-177 (418)
474 TIGR00368 Mg chelatase-related 98.1 2.6E-06 5.7E-11 83.0 5.1 59 82-147 190-249 (499)
475 PRK14731 coaE dephospho-CoA ki 98.1 1.7E-06 3.7E-11 75.0 3.4 71 202-285 116-186 (208)
476 PRK00300 gmk guanylate kinase; 98.1 2.6E-06 5.6E-11 73.2 3.7 28 105-132 3-30 (205)
477 TIGR02322 phosphon_PhnN phosph 98.1 3.8E-06 8.2E-11 70.6 4.6 26 107-132 1-26 (179)
478 PRK07960 fliI flagellum-specif 98.1 2.4E-06 5.1E-11 81.7 3.7 50 96-149 165-218 (455)
479 TIGR03496 FliI_clade1 flagella 98.1 3E-06 6.5E-11 80.6 4.3 62 78-146 112-174 (411)
480 cd01131 PilT Pilus retraction 98.1 1.8E-05 3.9E-10 68.0 8.8 24 109-132 3-26 (198)
481 PRK06793 fliI flagellum-specif 98.1 2.8E-06 6E-11 81.0 4.0 63 77-146 130-193 (432)
482 PF13476 AAA_23: AAA domain; P 98.1 3.1E-06 6.8E-11 71.6 3.7 36 96-132 9-44 (202)
483 cd02020 CMPK Cytidine monophos 98.1 4.8E-05 1.1E-09 61.2 10.5 61 225-285 83-147 (147)
484 COG4240 Predicted kinase [Gene 98.1 0.00014 2.9E-09 63.4 13.3 84 102-185 45-143 (300)
485 PRK08972 fliI flagellum-specif 98.0 3.4E-06 7.3E-11 80.4 3.9 37 95-132 151-187 (444)
486 PRK10416 signal recognition pa 98.0 5.2E-06 1.1E-10 76.6 5.0 39 105-146 112-151 (318)
487 PRK08472 fliI flagellum-specif 98.0 3.6E-06 7.9E-11 80.3 4.1 47 96-146 147-194 (434)
488 PRK05688 fliI flagellum-specif 98.0 2.7E-06 5.9E-11 81.4 3.1 38 94-132 156-193 (451)
489 PRK06315 type III secretion sy 98.0 4.1E-06 9E-11 80.1 3.8 48 94-144 152-200 (442)
490 PRK03846 adenylylsulfate kinas 98.0 8.6E-06 1.9E-10 69.9 5.1 42 105-149 22-65 (198)
491 TIGR03263 guanyl_kin guanylate 98.0 4.2E-06 9E-11 70.3 3.0 26 107-132 1-26 (180)
492 COG3910 Predicted ATPase [Gene 98.0 5.5E-06 1.2E-10 70.0 3.6 30 102-132 33-62 (233)
493 PRK14723 flhF flagellar biosyn 98.0 5.3E-06 1.1E-10 83.9 3.9 37 96-132 174-210 (767)
494 PLN03210 Resistant to P. syrin 98.0 1.9E-05 4.2E-10 84.5 8.1 43 100-144 200-243 (1153)
495 PRK06936 type III secretion sy 97.9 7.6E-06 1.6E-10 78.1 4.0 41 95-139 151-191 (439)
496 PRK14721 flhF flagellar biosyn 97.9 9.2E-06 2E-10 77.4 4.1 29 103-131 187-215 (420)
497 PRK06820 type III secretion sy 97.9 8.5E-06 1.8E-10 77.9 3.9 41 95-139 152-192 (440)
498 PRK13477 bifunctional pantoate 97.9 7.8E-06 1.7E-10 79.7 3.2 43 96-139 274-316 (512)
499 PRK00889 adenylylsulfate kinas 97.9 2.1E-05 4.6E-10 65.9 5.5 40 105-147 2-43 (175)
500 PRK06762 hypothetical protein; 97.9 0.00032 7E-09 58.1 12.6 26 107-132 2-27 (166)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-38 Score=270.79 Aligned_cols=173 Identities=21% Similarity=0.298 Sum_probs=142.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH----HHh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK----EAH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~----~~~ 151 (287)
+|+++||+|+||+.. +|++||++|.+||+++|+||||||||||+|||+++.. |++| |.++|.++. ...
T Consensus 2 mi~i~~l~K~fg~~~----VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~~ 74 (240)
T COG1126 2 MIEIKNLSKSFGDKE----VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDILK 74 (240)
T ss_pred eEEEEeeeEEeCCeE----EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHHH
Confidence 699999999999887 9999999999999999999999999999999999999 9999 999996542 223
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCceeecc--C--------------CccCCCCCCCceeccccceEEE-----ec
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS--F--------------DHGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~--~--------------~~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.++.++++||.+++ +|+++|+.++...-... - -.+..+.||.+|||||||||+| .+
T Consensus 75 ~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~ 154 (240)
T COG1126 75 LRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMD 154 (240)
T ss_pred HHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCC
Confidence 44556777777665 89999998864321100 0 0123478999999999999999 99
Q ss_pred CCEEeEec-----------chHHHHHhccCCe---EEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~~~---i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|+++|+|| ++++.+.++.+++ ++|||+|.++.+ |++ |+++++|+|+++.
T Consensus 155 P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 155 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred CCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHh
Confidence 99999999 6777788887764 699999999987 666 7788889888874
No 2
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-37 Score=284.37 Aligned_cols=175 Identities=20% Similarity=0.328 Sum_probs=145.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
++.|+++||+|.|++.. +++|+||+|++||+++|+||||||||||||+|+|+.. |++| |.++|+++... ..
T Consensus 3 ~~~l~i~~v~k~yg~~~----av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 3 KPALEIRNVSKSFGDFT----AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVPPE 75 (352)
T ss_pred CceEEEEeeeeecCCee----EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 45799999999999776 9999999999999999999999999999999999999 9999 99999987554 34
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeeccCC----------------ccCCCCCCCceeccccceEEE-----ecC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD----------------HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~----------------~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
+++++++||.+.+ +||.+|++|+..+....-. ....+++|.+|||||||||+| .+|
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P 155 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEP 155 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCc
Confidence 5678889998775 8999999999873321111 124579999999999999999 899
Q ss_pred CEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
++||||| ++..+++++.. ..||||||.++++. |++ |++...|+|+++.
T Consensus 156 ~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 156 KVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred chhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHh
Confidence 9999999 33334444333 24799999999998 666 8888899999984
No 3
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-36 Score=260.48 Aligned_cols=156 Identities=19% Similarity=0.304 Sum_probs=126.0
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
.+++++++++.|++.. +|+|+||+|.+||+++|+||||||||||+|+|+|++. |++| +.++|..+. ....
T Consensus 2 ~~l~i~~v~~~f~~~~----vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~--~p~~ 72 (248)
T COG1116 2 ALLEIEGVSKSFGGVE----VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVT--GPGP 72 (248)
T ss_pred ceEEEEeeEEEeCceE----EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccC--CCCC
Confidence 4699999999999865 9999999999999999999999999999999999999 9999 999998762 2223
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCceee-ccCC--------------ccCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVYA-PSFD--------------HGVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~~-~~~~--------------~~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
.+.++||.+.+ .|+++|+.++..... .... .+..+++|++|||||||||+| .+|++|
T Consensus 73 ~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lL 152 (248)
T COG1116 73 DIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLL 152 (248)
T ss_pred CEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEE
Confidence 35677777654 899999999866542 1100 124589999999999999999 999999
Q ss_pred eEec-----------chHHHHHhcc----CCeEEEEcChHHHHH
Q 023106 212 FLDG-----------GVWKDVSSMF----DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~----~~~i~vtHd~~~~~~ 240 (287)
|||| .+.+++.++. ..++|||||.+++..
T Consensus 153 LlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~ 196 (248)
T COG1116 153 LLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVY 196 (248)
T ss_pred EEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHh
Confidence 9999 2333333333 346799999999976
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-36 Score=260.61 Aligned_cols=174 Identities=20% Similarity=0.329 Sum_probs=138.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
||+++||+|.|+++. +++|+||+|++|++++++|||||||||+||||.+++. |++| |.++|+++.. ...
T Consensus 1 MI~~~nvsk~y~~~~----av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 1 MIEFENVSKRYGNKK----AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVEL 73 (309)
T ss_pred CceeeeeehhcCCce----eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHHH
Confidence 589999999999877 9999999999999999999999999999999999999 9999 9999987643 233
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeec----------------cCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAP----------------SFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~----------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
++.++|+.|...+ +|+.+|+..-..+... ..+ ....+|+|++|||||+|||-+ .+
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAad 153 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAAD 153 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcC
Confidence 4556666665443 8999999875433210 111 125589999999999999987 89
Q ss_pred CCEEeEec--------------chHHHHHhccCC-eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 208 GNYLFLDG--------------GVWKDVSSMFDE-KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 208 p~lLllDE--------------~~~~~l~~~~~~-~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
|+++|+|| +.+..|.+.+.. .||||||++++.. |++ |+++..++|+++..
T Consensus 154 P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 154 PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999 223333333333 5799999999998 655 88888999988753
No 5
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.2e-36 Score=264.34 Aligned_cols=173 Identities=22% Similarity=0.358 Sum_probs=143.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC---CHHH-Hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ---DPKE-AH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~---~~~~-~~ 151 (287)
+|.+++++|.|+... +++|||++|+.||.+|++|||||||||||++|+|++. |+.| |.++|+ +... ..
T Consensus 2 ~i~i~~~~~~~~~~~----a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~ 74 (345)
T COG1118 2 SIRINNVKKRFGAFG----ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV 74 (345)
T ss_pred ceeehhhhhhccccc----ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccch
Confidence 589999999999987 9999999999999999999999999999999999999 9999 999998 5544 23
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCceeeccCC-----------------ccCCCCCCCceeccccceEEE-----e
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD-----------------HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~-----------------~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
+.+.++++||.+.+ +||.+||+|+........+ ....+++|.+|||||+|||+| .
T Consensus 75 ~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~ 154 (345)
T COG1118 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAV 154 (345)
T ss_pred hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhc
Confidence 44568899998876 8999999999866522221 124589999999999999998 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+|++||||| ++...|+++.+. ++|||||.+++.+ |++ |++...|++.++.
T Consensus 155 eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 155 EPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred CCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999 233333333332 5799999999998 655 8888889998883
No 6
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-36 Score=274.74 Aligned_cols=176 Identities=17% Similarity=0.278 Sum_probs=145.3
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
|.+|+++||+|.||+.. +|+++||+|+.||+++|+||||||||||||+|+|++. |++| |.++|.++... ..
T Consensus 1 M~~i~l~~v~K~yg~~~----~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 1 MAELELKNVRKSFGSFE----VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred CcEEEEeeeEEEcCCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 56799999999999865 7999999999999999999999999999999999999 9999 99999987663 45
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeeccCC---------------ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
.+++.++||.+.+ +||++|+.|+........+ ....+++|.+|||||||||+| .+|+
T Consensus 74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCC
Confidence 6778899998775 8999999998776432111 123478999999999999998 8999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
++|+|| .+..++.++.+ ..|+||||..+++. |++ |++...|+|.++..
T Consensus 154 v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 154 VFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred EEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 999999 22333333322 35899999999998 554 88888999998853
No 7
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.4e-35 Score=261.56 Aligned_cols=185 Identities=19% Similarity=0.223 Sum_probs=148.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
+++++||+++|+++. +|+|+||++++|++++|+||||||||||+|+|+|+++ |.+| |.++|+++... ..
T Consensus 2 ~L~~~~ls~~y~~~~----il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~kel 74 (258)
T COG1120 2 MLEVENLSFGYGGKP----ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKEL 74 (258)
T ss_pred eeEEEEEEEEECCee----EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHHH
Confidence 689999999999877 9999999999999999999999999999999999999 9999 99999987542 12
Q ss_pred hCCC---CCCCChhHHHHHHHHHhcCCceeeccCC---c----------------cCCCCCCCceeccccceEEE-----
Q 023106 153 RRGA---PWTFNPLLLLNCLKNLRNQGSVYAPSFD---H----------------GVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~---~~~~~~~~~~tv~e~l~~~~~~~~~~~~---~----------------~~~~~~~~~LSgGekqRv~I----- 205 (287)
.+.+ |+.+.....++|+|-+.++...+...|. . ...++...+|||||||||.|
T Consensus 75 Ak~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALa 154 (258)
T COG1120 75 AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALA 154 (258)
T ss_pred hhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHh
Confidence 2223 4443333448999999988665433332 1 13378899999999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHHHHHhc
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIEYN 263 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~~~~~~ 263 (287)
++|++||||| ++++.++++.++ +|+|.||++.+.+ +++ |++++.|.|++++.....+.
T Consensus 155 Q~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~ 234 (258)
T COG1120 155 QETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLRE 234 (258)
T ss_pred cCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHH
Confidence 9999999999 677788877733 5799999999998 555 89999999999877665555
Q ss_pred Cccch
Q 023106 264 DRPNA 268 (287)
Q Consensus 264 ~~~~~ 268 (287)
++...
T Consensus 235 Vygv~ 239 (258)
T COG1120 235 VYGVD 239 (258)
T ss_pred HhCCc
Confidence 44444
No 8
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-35 Score=260.08 Aligned_cols=177 Identities=18% Similarity=0.232 Sum_probs=142.6
Q ss_pred EEEecCchhhhhhh-hhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~-~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
||++++|+|.|... .....+|+||||+|++|+|+||||.||||||||+|+|.++.. |++| +.++|.++..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEecccCChHH
Confidence 58999999999872 223459999999999999999999999999999999999999 9999 9999976522
Q ss_pred -HhhhCCCCCCCChhHH---HHHHHHHhcCCceeeccCC---------------ccCCCCCCCceeccccceEEE-----
Q 023106 150 -AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~LSgGekqRv~I----- 205 (287)
...++.+++.||.+++ .||++|++++..+...... .+..+++|.+|||||||||.|
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHh
Confidence 2345668888888876 7999999998776532111 124578999999999999999
Q ss_pred ecCCEEeEec-----------chHHHHHhc---cCC-eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSM---FDE-KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~---~~~-~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||+|| .+++.|.+. +.. .++|||.|+.+.+ |+. |++++.|+..++.
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 8999999999 344444444 333 3699999999987 655 8889999887763
No 9
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-35 Score=257.98 Aligned_cols=177 Identities=19% Similarity=0.296 Sum_probs=140.0
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
|++|+++|+++.|++.. +|+||||+|++|++++|+||||||||||+|+|+|+++ |.+| +.+.|.+.......
T Consensus 2 ~~~i~v~nl~v~y~~~~----vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 2 MPMIEVENLTVSYGNRP----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKR 74 (254)
T ss_pred CcEEEEeeeEEEECCEe----eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEccccccccccC
Confidence 46899999999998655 9999999999999999999999999999999999999 9999 89999876544322
Q ss_pred CCCCCCCCh-----hHHHHHHHHHhcCCceeeccCCc-------------------cCCCCCCCceeccccceEEE----
Q 023106 154 RGAPWTFNP-----LLLLNCLKNLRNQGSVYAPSFDH-------------------GVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 154 ~~~~~~~~~-----~~~~tv~e~l~~~~~~~~~~~~~-------------------~~~~~~~~~LSgGekqRv~I---- 205 (287)
..++|++|. ....||.|.+.++.......|.. ...++.+.+|||||+|||.|
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL 154 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL 154 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHh
Confidence 224444442 22389999999875443222211 23478999999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH---HHHhcCCCcHHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL---KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi---gr~i~~G~~~~~~~~ 258 (287)
.+|++|+||| .+.+.|.++.++ +++||||++.+.. +++ +++++.|+++++...
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~G~~~~~~~~ 228 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTE 228 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEeccChhhccCH
Confidence 9999999999 455555555553 4699999999998 555 777889999998664
No 10
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.7e-35 Score=252.53 Aligned_cols=176 Identities=21% Similarity=0.346 Sum_probs=142.4
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--- 150 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--- 150 (287)
.++|++++|+++||++. +++|+||+|++|++++|+||||||||||+|+|.|+++ |++| |.++|.++...
T Consensus 6 ~~~I~vr~v~~~fG~~~----Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 6 EPLIEVRGVTKSFGDRV----ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred cceEEEeeeeeecCCEE----EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhccCHH
Confidence 34799999999999988 9999999999999999999999999999999999999 9999 99999986432
Q ss_pred ---hhhCCCCCCCChhHH---HHHHHHHhcCCceeec-----------------cCCccCCCCCCCceeccccceEEE--
Q 023106 151 ---HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP-----------------SFDHGVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 151 ---~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~-----------------~~~~~~~~~~~~~LSgGekqRv~I-- 205 (287)
..+..++..||...+ ++|+||+.+...-+.. .......+++|.+|||||++|++|
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHH
Confidence 224446778887654 8999999986442211 112223578999999999999999
Q ss_pred ---ecCCEEeEec--------------chHHHHHhccCC-eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 ---VDGNYLFLDG--------------GVWKDVSSMFDE-KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ---~~p~lLllDE--------------~~~~~l~~~~~~-~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++++|| +++..|++.+.. .++||||++.+.. |++ |++++.|+++++..
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999 344444444443 4799999999987 544 78889999999853
No 11
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-34 Score=246.29 Aligned_cols=182 Identities=20% Similarity=0.278 Sum_probs=144.3
Q ss_pred cEEEecCchhhh-hhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y-~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
.+|+++||++.| ++.. +|+||||+|++||+|+|||+||||||||||+|+|+.. |++| +.++|.++..
T Consensus 2 ~~i~~~nl~k~yp~~~~----aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQ----ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecCCCce----eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccchH
Confidence 479999999999 5555 9999999999999999999999999999999999999 9999 8999976532
Q ss_pred --HhhhCCCCCCCChhHH---HHHHHHHhcCCceeec-------cCCcc----------------CCCCCCCceeccccc
Q 023106 150 --AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP-------SFDHG----------------VGDPVEDDILVGLQH 201 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~-------~~~~~----------------~~~~~~~~LSgGekq 201 (287)
...+..+++.||.+++ +++++|+..+..-+.+ .|... .....+++|||||||
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQ 154 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQ 154 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhH
Confidence 2234557888888776 8999999887543322 12111 124578999999999
Q ss_pred eEEE-----ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 202 KVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 202 Rv~I-----~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
||+| ++|+++|.|| .+++.|++.... +|+..|+++.+.+ |++ |+++++|++.+
T Consensus 155 RVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~e 234 (258)
T COG3638 155 RVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASE 234 (258)
T ss_pred HHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhh
Confidence 9999 9999999999 456666655432 3577799999998 887 89999999988
Q ss_pred HHHHHHHhcC
Q 023106 255 VAKWRIEYND 264 (287)
Q Consensus 255 ~~~~~~~~~~ 264 (287)
+....+...+
T Consensus 235 l~~~~~~~iY 244 (258)
T COG3638 235 LTDEALDEIY 244 (258)
T ss_pred hhHHHHHHHh
Confidence 7666555433
No 12
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.9e-34 Score=249.77 Aligned_cols=161 Identities=18% Similarity=0.265 Sum_probs=128.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH-------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK------- 148 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~------- 148 (287)
+++++||+|.|+.......+|+++||+|++||+++|+|||||||||||++|.|+.. |++| +.++|.++.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHH
Confidence 47899999999765334569999999999999999999999999999999999999 9999 789997542
Q ss_pred HHhhhCCCCCCCChhHH---HHHHHHHhcCCceeecc----------------CCccCCCCCCCceeccccceEEE----
Q 023106 149 EAHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS----------------FDHGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 149 ~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~----------------~~~~~~~~~~~~LSgGekqRv~I---- 205 (287)
...++..++++||.+.+ +|+.||+.++..+.... ......+++|.+|||||||||+|
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL 157 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARAL 157 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHH
Confidence 12445568889988775 89999999643322111 11122347899999999999999
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ 240 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~ 240 (287)
.+|+++|+|| .+++.+.++.+. +|+||||.+.+..
T Consensus 158 ~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~ 208 (226)
T COG1136 158 INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKY 208 (226)
T ss_pred hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh
Confidence 9999999999 566677666443 4799999999976
No 13
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.98 E-value=8e-34 Score=245.00 Aligned_cols=179 Identities=17% Similarity=0.211 Sum_probs=137.0
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--- 150 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--- 150 (287)
|++|+++||++.|+......++|++|||+|.+||++||+|+||||||||+++|+|+.+ |++| |.++|......
T Consensus 1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRA 77 (252)
T ss_pred CceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccc
Confidence 4589999999999876545569999999999999999999999999999999999999 9999 99999754322
Q ss_pred -hhhCCCCCCCChhH-----HHHHHHHHhcCCceee--------------ccCCccCCCCCCCceeccccceEEE-----
Q 023106 151 -HARRGAPWTFNPLL-----LLNCLKNLRNQGSVYA--------------PSFDHGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 151 -~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~~--------------~~~~~~~~~~~~~~LSgGekqRv~I----- 205 (287)
.+...+.++||++. ..++.+.|..+..... ........+++|++|||||+|||+|
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI 157 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhc
Confidence 12233556666543 2667666665544311 0112234478999999999999999
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+|+.+.++.+. .+|||||+..+.. |++ |++++.++..++.
T Consensus 158 ~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 158 PEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred cCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 8999999999 556666555443 3699999999987 554 7777777777764
No 14
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.98 E-value=9.2e-34 Score=235.88 Aligned_cols=158 Identities=18% Similarity=0.195 Sum_probs=127.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA----- 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~----- 150 (287)
||+++||+|.|++.. ++|+||||+|++||++.|+||||||||||+|+|.+... |+.| +.++|+++...
T Consensus 1 mI~f~~V~k~Y~~g~---~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 1 MIRFENVSKAYPGGR---EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGREI 74 (223)
T ss_pred CeeehhhhhhcCCCc---hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccccc
Confidence 589999999997653 39999999999999999999999999999999999999 9999 99999976432
Q ss_pred -hhhCCCCCCCChhHH---HHHHHHHhcCCceeeccCC---------------ccCCCCCCCceeccccceEEE-----e
Q 023106 151 -HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..++.++.+||++.+ .|++||+++...+....-. .......|.+|||||||||+| .
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~ 154 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN 154 (223)
T ss_pred chhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc
Confidence 335557788888876 7999999998765422111 123356899999999999999 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+|.+||+|| ++++.+.++.. .+++.|||.+++.+
T Consensus 155 ~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 155 QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNR 202 (223)
T ss_pred CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHh
Confidence 999999999 33444444332 35799999999988
No 15
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=4.2e-34 Score=246.87 Aligned_cols=175 Identities=27% Similarity=0.407 Sum_probs=144.5
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH----HH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK----EA 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~----~~ 150 (287)
+++++++|+|+||+.. +++||||++.+|+++|||||||||||||+++|+|.++ |++| +.++|+++. ..
T Consensus 3 ~lL~v~~l~k~FGGl~----Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 3 PLLEVRGLSKRFGGLT----AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPPHR 75 (250)
T ss_pred ceeeeccceeecCCEE----EEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCHHH
Confidence 4799999999999988 9999999999999999999999999999999999999 9999 999999753 34
Q ss_pred hhhCCCCCCCChhHH---HHHHHHHhcCCce--------eeccCCc-------------------cCCCCCCCceecccc
Q 023106 151 HARRGAPWTFNPLLL---LNCLKNLRNQGSV--------YAPSFDH-------------------GVGDPVEDDILVGLQ 200 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~--------~~~~~~~-------------------~~~~~~~~~LSgGek 200 (287)
..+.|+.-.||...+ +|++||+..+... ..+.+.. ...+..+.+||+|+|
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~q 155 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQ 155 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHh
Confidence 557788888887654 8999999876331 1122210 134788999999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~ 253 (287)
+|+.| .+|.+|+||| ++.+.|+++.+. .++|.|||+.++. |++ |+++++|+|+
T Consensus 156 R~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~ 235 (250)
T COG0411 156 RRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPE 235 (250)
T ss_pred HHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHH
Confidence 99988 8999999999 556666666542 3599999999998 544 9999999999
Q ss_pred HHHH
Q 023106 254 DVAK 257 (287)
Q Consensus 254 ~~~~ 257 (287)
++..
T Consensus 236 eV~~ 239 (250)
T COG0411 236 EVRN 239 (250)
T ss_pred HHhc
Confidence 9854
No 16
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.2e-32 Score=240.25 Aligned_cols=178 Identities=18% Similarity=0.206 Sum_probs=142.2
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH----HH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK----EA 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~----~~ 150 (287)
++++++++++.|++. ..+|+++||+|++|++++|+|+||||||||+++|+|+++ |++| +.++|.+.. ..
T Consensus 2 ~~i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 2 RMIEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKSLL 75 (235)
T ss_pred ceEEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhhHH
Confidence 479999999999775 229999999999999999999999999999999999999 9999 889998754 22
Q ss_pred hhhCCCCCCCChhHH----HHHHHHHhcCCceeeccCC---------------ccCCCCCCCceeccccceEEE-----e
Q 023106 151 HARRGAPWTFNPLLL----LNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~----~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..++.++++||++.. .||.+.++|+......... ....++.+..|||||||||+| .
T Consensus 76 ~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~ 155 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAM 155 (235)
T ss_pred HhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHc
Confidence 334456677776542 6899999987543211110 123478999999999999999 9
Q ss_pred cCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~~ 259 (287)
+|++||||| .+++.+.++... .|++|||++.+.. |++ |+++.+|+|.++..+.
T Consensus 156 ~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 156 GPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999999999 566666666544 5799999999998 544 8888999998887653
No 17
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=4.6e-32 Score=241.13 Aligned_cols=179 Identities=21% Similarity=0.313 Sum_probs=141.7
Q ss_pred cEEEecCchhhhhhhhh--------------------ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccC
Q 023106 76 PVVEARCMDEVYDALAQ--------------------RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW 135 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~--------------------~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~ 135 (287)
..|+++||+|-||.... -+.-++|+||+|+.|||..|+|-||||||||+++|.++..
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--- 79 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--- 79 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC---
Confidence 35889999998875431 1335789999999999999999999999999999999999
Q ss_pred CCcc-eeeCCCCHHH-----H--hhhCCCCCCCChhHH---HHHHHHHhcCCceeeccCC---------------ccCCC
Q 023106 136 PQKA-SSFDSQDPKE-----A--HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD---------------HGVGD 189 (287)
Q Consensus 136 p~~G-i~~~g~~~~~-----~--~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~---------------~~~~~ 189 (287)
|++| +.++|.++.. . .++..+.++||.+.+ .||++|+.|+..+...... .+..+
T Consensus 80 pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~ 159 (386)
T COG4175 80 PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYAD 159 (386)
T ss_pred CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhh
Confidence 9999 9999997632 1 234457788887765 8999999999876532211 12457
Q ss_pred CCCCceeccccceEEE-----ecCCEEeEec---------------chHHHHHhccCCeEEEEcChHHHHH---HHH---
Q 023106 190 PVEDDILVGLQHKVVI-----VDGNYLFLDG---------------GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL--- 243 (287)
Q Consensus 190 ~~~~~LSgGekqRv~I-----~~p~lLllDE---------------~~~~~l~~~~~~~i~vtHd~~~~~~---rvi--- 243 (287)
++|++|||||||||-| .+|++||+|| +++++-.++.+.+||||||++++.+ |+.
T Consensus 160 ~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimk 239 (386)
T COG4175 160 KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMK 239 (386)
T ss_pred cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEec
Confidence 8999999999999988 8999999999 2233333334456799999999998 655
Q ss_pred -HHHhcCCCcHHHHH
Q 023106 244 -KRHISTGKPPDVAK 257 (287)
Q Consensus 244 -gr~i~~G~~~~~~~ 257 (287)
|+++..|+|++++.
T Consensus 240 dG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 240 DGEIVQVGTPEEILL 254 (386)
T ss_pred CCeEEEeCCHHHHHc
Confidence 89999999999864
No 18
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.4e-31 Score=226.65 Aligned_cols=177 Identities=17% Similarity=0.227 Sum_probs=135.3
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---Ccc-eeeCCCCHHH-
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKA-SSFDSQDPKE- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p---~~G-i~~~g~~~~~- 149 (287)
++.++++||++.||++. +|+|||++|+++.++|||||+|||||||||++..+.. +.| ..| +.++|+++..
T Consensus 5 ~~~~~~~~l~~yYg~~~----aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd-l~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 5 IPAIEVRDLNLYYGDKH----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND-LIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred cceeEecceeEEECchh----hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc-cCcCceEEEEEEECCeeccCC
Confidence 34799999999999887 9999999999999999999999999999999998865 222 247 8889986532
Q ss_pred ----HhhhCCCCCCCChhH--HHHHHHHHhcCCceeeccC-----------------C--ccCCCCCCCceeccccceEE
Q 023106 150 ----AHARRGAPWTFNPLL--LLNCLKNLRNQGSVYAPSF-----------------D--HGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ----~~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~~~~-----------------~--~~~~~~~~~~LSgGekqRv~ 204 (287)
...++.++++||.++ .++++||+.++.+++...- + .+..++.+..||||||||++
T Consensus 80 ~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLc 159 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLC 159 (253)
T ss_pred CCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHH
Confidence 223334556666544 4999999999876653221 1 01225678889999999999
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|++||||| .+-+.|.++.+. +|+|||+|..+.+ +.. |++++.|+++++.
T Consensus 160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 9 8999999999 233444454443 4699999999987 322 8999999988874
No 19
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.9e-32 Score=255.24 Aligned_cols=176 Identities=18% Similarity=0.256 Sum_probs=137.1
Q ss_pred ccEEEecCchhhh-hhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-h
Q 023106 75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-H 151 (287)
Q Consensus 75 ~~~i~~~~l~~~y-~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~ 151 (287)
|.+|+++||++.| ++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++... .
T Consensus 1 m~~l~i~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 1 MAGLKLQAVRKSYDGKTQ----VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEP 73 (356)
T ss_pred CCEEEEEeEEEEeCCCCE----EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence 4579999999999 6655 8999999999999999999999999999999999999 9999 99999865321 1
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCceee-cc-------------CC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGSVYA-PS-------------FD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~~-------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
.+++++++||.+.+ +++.+|+.++..... .. +. ....++++.+|||||||||+| .+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P 153 (356)
T PRK11650 74 ADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREP 153 (356)
T ss_pred HHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 23456777776544 699999988643211 00 00 123478899999999999998 899
Q ss_pred CEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
++||||| .+++.|.++.+ ..|+||||.+++.. |++ |++++.|+++++..
T Consensus 154 ~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 154 AVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 9999999 34555555433 25799999999876 444 78888999888743
No 20
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.9e-32 Score=226.99 Aligned_cols=178 Identities=20% Similarity=0.244 Sum_probs=137.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----Hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----AH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~~ 151 (287)
||++.+++|+|+...+ +++||||++++|+++||+|||||||||+||+|++++. |++| ++++|.+... .+
T Consensus 1 Ml~v~~l~K~y~~~v~---AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 1 MLEVTDLTKSYGSKVQ---AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred CeeeeehhhhccCHHh---hhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHHh
Confidence 5899999999998653 8999999999999999999999999999999999999 9999 9999987532 23
Q ss_pred hhCCCCC-CCChhHHHHHHHHHhcCCceeeccCC---------------ccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 152 ARRGAPW-TFNPLLLLNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 152 ~~~~~~~-~~~~~~~~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
+..|+.. ....+.-+|+.|||.+...++...-. ....++.+..+|-||||||.| ++|.+
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i 154 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI 154 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe
Confidence 3334322 11223338999999987665422111 012367889999999999988 99999
Q ss_pred EeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRI 260 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~~~ 260 (287)
+++|| .+.+.+.++... ++|.||+|+++.. |++ |.++..|+++++.....
T Consensus 155 ~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~ 225 (245)
T COG4555 155 LVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225 (245)
T ss_pred EEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHh
Confidence 99999 344445554442 5799999999986 655 88999999998866543
No 21
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.97 E-value=1.8e-32 Score=255.07 Aligned_cols=176 Identities=17% Similarity=0.247 Sum_probs=138.3
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
|.+|+++||++.|++.. +|+|+||++++|++++|+||||||||||+++|+|+++ |++| +.++|+++... ..
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAFT----ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ 74 (353)
T ss_pred CcEEEEEEEEEEeCCeE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 56899999999998765 8999999999999999999999999999999999999 9999 99999765321 22
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
++++.++||.+.+ +++.+|+.++...... .+. ....++++.+|||||||||+| .+|+
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPG 154 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3456777776554 6999999876432110 000 123468999999999999999 8999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
++|||| .+++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999 44555555433 25799999999876 554 88888999888754
No 22
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.3e-32 Score=254.13 Aligned_cols=175 Identities=19% Similarity=0.295 Sum_probs=137.4
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
|++|+++||++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 4 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~~ 76 (351)
T PRK11432 4 KNFVVLKNITKRFGSNT----VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTHRSIQ 76 (351)
T ss_pred CcEEEEEeEEEEECCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 66899999999998755 8999999999999999999999999999999999999 9999 89999765322 22
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeecc--------------CC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
+++++++||.+.+ +++.+|+.++....... +. ....++++.+|||||||||+| .+|+
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~ 156 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPK 156 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3456677776543 69999999864321100 00 123478899999999999998 8999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+||||| .+.+.|.++.. ..|+||||.+++.. |++ |+++..|+++++.
T Consensus 157 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 157 VLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999 34445554433 25799999999876 554 8888889988874
No 23
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=3.5e-32 Score=228.14 Aligned_cols=178 Identities=19% Similarity=0.307 Sum_probs=142.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
|.++.++||.|+|+.+. ++++|||+|.+||+|||+|||||||||.+.++.|+.+ |++| +.++|.++..
T Consensus 2 ~~~L~a~~l~K~y~kr~----Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~---~d~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 2 MSTLVAENLAKSYKKRK----VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR---PDSGKILLDDEDITKLPMH 74 (243)
T ss_pred CcEEEehhhhHhhCCee----eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe---cCCceEEECCcccccCChH
Confidence 55799999999999887 9999999999999999999999999999999999999 9999 9999998643
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceeecc-C---------------C-ccCCCCCCCceeccccceEEE----
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS-F---------------D-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~-~---------------~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
.+.+.|+++.+|.... ++|.+|+.......... . . ....+.+...||||||+|+.|
T Consensus 75 ~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaL 154 (243)
T COG1137 75 KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARAL 154 (243)
T ss_pred HHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHH
Confidence 4567888888887765 79999987654432211 0 0 013367888999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC--eE-EEEcChHHHHH---HHH----HHHhcCCCcHHHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE--KW-FIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~--~i-~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~~ 259 (287)
.+|.++|||| ++.+.+..+.+. +| +.+|+..+... |.. |+++++|+|++++..-
T Consensus 155 a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 155 AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 8999999999 344444555443 34 66699988877 433 8999999999987653
No 24
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.96 E-value=4.8e-32 Score=251.01 Aligned_cols=177 Identities=20% Similarity=0.261 Sum_probs=134.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------ 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------ 149 (287)
||+++||+|.|++......+|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHH
Confidence 48999999999632111238999999999999999999999999999999999999 9999 9999986532
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceee-cc-------------CC-ccCCCCCCCceeccccceEEE-----e
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA-PS-------------FD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~~-------------~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
...+..+++.||...+ .|+.+|+.++..... +. +. ....++++.+|||||||||+| .
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh
Confidence 1224456666766443 689999987532211 00 00 123468899999999999999 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+|++||||| .+++.|+++.+ .+|++|||++.+.+ |++ |++++.|++.++.
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999 45666666543 24699999999976 554 8888889888774
No 25
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=2.4e-31 Score=228.13 Aligned_cols=175 Identities=21% Similarity=0.311 Sum_probs=142.7
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH----HH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK----EA 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~----~~ 150 (287)
+|++++||+..||... +|++|||++++|+|++|+|+||+|||||+++|+|+.+ +.+| |.++|+++. ..
T Consensus 2 ~mL~v~~l~~~YG~~~----~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~---~~~G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 2 PMLEVENLSAGYGKIQ----ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPHE 74 (237)
T ss_pred CceeEEeEeeccccee----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeeEEECCeecCCCCHHH
Confidence 5799999999999876 9999999999999999999999999999999999999 9999 999999863 44
Q ss_pred hhhCCCCCCCChhH---HHHHHHHHhcCCceeec-c------------CC--ccCCCCCCCceeccccceEEE-----ec
Q 023106 151 HARRGAPWTFNPLL---LLNCLKNLRNQGSVYAP-S------------FD--HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 151 ~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~-~------------~~--~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
+.+.|+.++++... -+||.||+..+...... . |. ....++..++|||||||-++| .+
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 56778777766443 48999999987543221 0 11 224467899999999999998 89
Q ss_pred CCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
|++|+||| ++.+.++++.+. +++|.++...+.. |.+ ||++.+|+.+++..
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 99999999 566667776643 3589999999887 433 89999999988754
No 26
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=1.6e-31 Score=243.01 Aligned_cols=177 Identities=24% Similarity=0.346 Sum_probs=138.7
Q ss_pred ccEEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---
Q 023106 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--- 149 (287)
+.+++++||+|.|+ +.. +|+||||+|++|+++||+||||||||||+|+|+|++. |++| +.++|.++..
T Consensus 2 ~~~i~~~~l~k~~~~~~~----~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 2 IEVIEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPA 74 (293)
T ss_pred CceeeecceEEEeCCCCE----EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHH
Confidence 34689999999999 576 9999999999999999999999999999999999999 9999 8999986533
Q ss_pred -HhhhCC-CCCCCChhHHHHHHHHHhcCCceeecc--CCc----------c---CCCCCCCceeccccceEEE-----ec
Q 023106 150 -AHARRG-APWTFNPLLLLNCLKNLRNQGSVYAPS--FDH----------G---VGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 150 -~~~~~~-~~~~~~~~~~~tv~e~l~~~~~~~~~~--~~~----------~---~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.+.+.| +++.+..+..+|+.|++.+...++... ... . ..++.+..||+|||||+.| .+
T Consensus 75 ~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~ 154 (293)
T COG1131 75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD 154 (293)
T ss_pred HHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcC
Confidence 222233 333333344589999998866555321 000 0 1257789999999999988 99
Q ss_pred CCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
|+++|||| .+++.|+++.+. ++++||.++++.. |++ |++++.|++.++...
T Consensus 155 P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 155 PELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred CCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999 677788877664 3588899999988 454 899999988775444
No 27
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.96 E-value=3.2e-31 Score=249.92 Aligned_cols=175 Identities=20% Similarity=0.266 Sum_probs=134.7
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---H
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---A 150 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~ 150 (287)
|++|+++||++.|++.. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++| +.++|.++.. .
T Consensus 1 ~~~L~~~nls~~y~~~~----vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 1 MPMIDVSDLSVEFGDTT----VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSAR 73 (402)
T ss_pred CceEEEeeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHH
Confidence 45799999999998766 9999999999999999999999999999999999999 9999 9999976532 1
Q ss_pred hhhCCCCCCCChhH---HHHHHHHHhcCCceeeccC---C----------------ccCCCCCCCceeccccceEEE---
Q 023106 151 HARRGAPWTFNPLL---LLNCLKNLRNQGSVYAPSF---D----------------HGVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 151 ~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~---~----------------~~~~~~~~~~LSgGekqRv~I--- 205 (287)
..++.+++.+|... .+++.+|+.++...+...+ . ....++.+.+|||||||||.|
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArA 153 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARA 153 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 22233444454432 2788999887543211000 0 012367899999999999998
Q ss_pred --ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
++|++||||| .+++.|+++.+ .+|++|||++++.+ |++ |++++.|+++++.
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999 45666666543 24699999999976 554 8888899998864
No 28
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.96 E-value=1.3e-31 Score=250.78 Aligned_cols=176 Identities=22% Similarity=0.336 Sum_probs=137.5
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
+++|+++|+++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++| |.++|.++... ..
T Consensus 12 ~~~L~l~~l~~~~~~~~----~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 12 SPLVELRGISKSFDGKE----VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITHVPAE 84 (375)
T ss_pred CceEEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence 45799999999998765 8999999999999999999999999999999999999 9999 99999865321 12
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceee-cc-------------CC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYA-PS-------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~~-------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
++++.++||.+.+ +++.+|+.++..... +. +. ....++++.+|||||+|||+| .+|+
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ 164 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK 164 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3456777776554 699999987643211 00 00 123478899999999999998 8999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+||||| .+.+.|+++.. ..|+||||.+++.. |++ |+++..|++.++..
T Consensus 165 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 165 VLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999 44555555433 24799999999876 544 88888898887743
No 29
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.96 E-value=2.1e-31 Score=243.73 Aligned_cols=176 Identities=20% Similarity=0.274 Sum_probs=134.7
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH--hh
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--HA 152 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--~~ 152 (287)
.+|+++||+|.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 6 ~~i~i~~l~k~~~~~~----~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 6 APIDFRNVEKRYGDKL----VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRARHA 78 (306)
T ss_pred ceEEEEeEEEEECCeE----EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccchHHH
Confidence 4799999999998765 9999999999999999999999999999999999999 9999 89999875321 22
Q ss_pred hCCCCCCCChhH---HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLL---LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
+..+++.+|... .+|+.+|+.+....+. . .+. ....++.+..||+|||||++| .+|+
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~ 158 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPD 158 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCC
Confidence 333445554432 2688899875332211 0 011 112367789999999999988 9999
Q ss_pred EEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
+||||| .+++.|.++.+. ++++||+++++.. |++ |++++.|+++++...
T Consensus 159 lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999 566777766432 4688999999976 544 788889998887544
No 30
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.96 E-value=2.3e-31 Score=246.52 Aligned_cols=177 Identities=20% Similarity=0.263 Sum_probs=135.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--Hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AH 151 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~ 151 (287)
+.+|+++||+|.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 39 ~~~i~i~nl~k~y~~~~----~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKA----VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARARL 111 (340)
T ss_pred ceeEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcchHH
Confidence 45799999999998766 9999999999999999999999999999999999999 9999 8999986532 12
Q ss_pred hhCCCCCCCChhH---HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 152 ARRGAPWTFNPLL---LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 152 ~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
.+..+++.+|... .+++.+|+.+....+. . .+. ....++.+..|||||||||.| .+|
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDP 191 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCC
Confidence 2344555555433 2688888875322111 0 011 112467889999999999988 899
Q ss_pred CEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
++||||| .+++.|.++... ++++||+++++.. |++ |++++.|+++++...
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999 566667666432 4699999999976 554 888889998887544
No 31
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.9e-30 Score=218.46 Aligned_cols=176 Identities=19% Similarity=0.275 Sum_probs=138.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----H
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~ 150 (287)
||+++||+++..++. +|+++||++.+||++||+||||||||||+|.|+|.+. |++| +.++|.+... .
T Consensus 1 mi~a~nls~~~~Gr~----ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 1 MIRAENLSYSLAGRR----LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred CeeeeeeEEEeecce----eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeCCcChhhCCHHHH
Confidence 589999999998887 9999999999999999999999999999999999999 9999 8899987533 1
Q ss_pred hhhCC-CCCCCChhHHHHHHHHHhcCCceeeccCC----c-------------cCCCCCCCceeccccceEEE-------
Q 023106 151 HARRG-APWTFNPLLLLNCLKNLRNQGSVYAPSFD----H-------------GVGDPVEDDILVGLQHKVVI------- 205 (287)
Q Consensus 151 ~~~~~-~~~~~~~~~~~tv~e~l~~~~~~~~~~~~----~-------------~~~~~~~~~LSgGekqRv~I------- 205 (287)
...+. +++.......+++.|.+.++...+...-. . ....+...+|||||||||.+
T Consensus 74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl 153 (259)
T COG4559 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQL 153 (259)
T ss_pred HHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHc
Confidence 22222 34444444447899999887654422111 1 13356778899999999987
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~~ 259 (287)
.++.+|+||| .+++..+++... ++.|-||++++.. |++ ||+++.|+|.+++...
T Consensus 154 ~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~E 232 (259)
T COG4559 154 WPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDE 232 (259)
T ss_pred cCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHH
Confidence 4456999999 567777777765 4689999999998 666 9999999999986544
No 32
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.4e-30 Score=216.64 Aligned_cols=177 Identities=17% Similarity=0.256 Sum_probs=133.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
||+++||+|.|+++. +++++|++|++|.+.+||||||||||||+.+++.+++ .++| +.++|.++... ..
T Consensus 1 MI~i~nv~K~y~~~~----vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~---~d~G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 1 MITIENVSKSYGTKV----VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK---KDSGEITIDGLELTSTPSKEL 73 (252)
T ss_pred CeeehhhhHhhCCEE----eeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc---ccCceEEEeeeecccCChHHH
Confidence 589999999999987 9999999999999999999999999999999999999 9999 99999875321 00
Q ss_pred hCCCCCCCCh---hHHHHHHHHHhcCCceeec-cCC----------------ccCCCCCCCceeccccceEEE-----ec
Q 023106 153 RRGAPWTFNP---LLLLNCLKNLRNQGSVYAP-SFD----------------HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 153 ~~~~~~~~~~---~~~~tv~e~l~~~~~~~~~-~~~----------------~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.+.+...-|. ..-+||.+-+.|+...+.. +.. ....+++..+|||||+||..| ++
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQd 153 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQD 153 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeecc
Confidence 1111111111 1127888888887654321 111 123478999999999999766 89
Q ss_pred CCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRI 260 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~~~ 260 (287)
.++++||| .+++.|+.+.+ .+++|-||.+++.. .++ |+++.+|++++++....
T Consensus 154 TdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~ 228 (252)
T COG4604 154 TDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEI 228 (252)
T ss_pred CcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHH
Confidence 99999999 34444544433 35799999999987 444 89999999999875543
No 33
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.96 E-value=2.9e-31 Score=247.60 Aligned_cols=174 Identities=18% Similarity=0.307 Sum_probs=135.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc--c-eeeCCCCHHHH-hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--A-SSFDSQDPKEA-HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~--G-i~~~g~~~~~~-~~ 152 (287)
.|+++||+|.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++ | +.++|.++... ..
T Consensus 5 ~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGANT----VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred EEEEEEEEEEECCeE----EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence 489999999998755 8999999999999999999999999999999999999 999 9 88999765321 12
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
++.++++||.+.+ +++.+|+.++..... + .+. ....++++.+|||||||||+| .+|+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ 157 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPD 157 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3456677776554 699999987543211 0 000 123478899999999999999 8999
Q ss_pred EEeEec-----------chHHHHHhccC-----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD-----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~-----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+||||| .+++.|.++.+ ..|+||||++++.. |++ |+++..|+++++..
T Consensus 158 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 158 VLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999 44555554433 24799999999876 554 88888999888754
No 34
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=1.3e-30 Score=215.82 Aligned_cols=171 Identities=22% Similarity=0.254 Sum_probs=133.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~ 154 (287)
||.+++|.+.|+..+ -.+++.|+.|++++|+||+|||||||+++|+|.+. |.+| +.++|++.... ...+
T Consensus 1 ~l~L~~V~~~y~~~~------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGHLP------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAER 71 (231)
T ss_pred CccccceEEeeCcce------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccC
Confidence 367889999998754 36889999999999999999999999999999999 9999 89999976443 3334
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCceeeccCC---------------ccCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
-+...||..++ ++|.+|+.++.......-. .+..++.|.+|||||||||+| .+-+++
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pil 151 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPIL 151 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeE
Confidence 46777887665 8999999987653321110 123478999999999999998 667799
Q ss_pred eEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 212 FLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|||| +++..+.+++++ .+||||..+.+.+ |++ ||+.+.|...++.
T Consensus 152 LLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 152 LLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred EecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999 445555555543 4699999999987 444 8888888887764
No 35
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.1e-31 Score=247.83 Aligned_cols=176 Identities=18% Similarity=0.285 Sum_probs=136.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
+++|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 17 ~~~l~l~~v~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~ 89 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPPY 89 (377)
T ss_pred CceEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence 45799999999998755 8999999999999999999999999999999999999 9999 89999865321 23
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeecc--------------CC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
++++++.||.+.+ +++.+|+.++....... +. ....++++.+|||||||||+| .+|+
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~ 169 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPK 169 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4456777776544 69999998764321100 00 123478899999999999999 8999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+||||| .+.+.|.++.. ..|+||||++++.. |++ |+++..|++.++..
T Consensus 170 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 170 LLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 999999 33344444432 24799999999876 544 78888899888753
No 36
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=3.3e-30 Score=211.53 Aligned_cols=161 Identities=20% Similarity=0.195 Sum_probs=129.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------ 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------ 149 (287)
+|++++++|..+.....+.+|++|+|.|++||-+|||||+|||||||+-+++|+.. |++| +.+.|++...
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhcCHHHH
Confidence 79999999999887777789999999999999999999999999999999999999 9999 9999987532
Q ss_pred -HhhhCCCCCCCChhHH---HHHHHHHhcCCceeecc----CC-----------ccCCCCCCCceeccccceEEE-----
Q 023106 150 -AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS----FD-----------HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~----~~-----------~~~~~~~~~~LSgGekqRv~I----- 205 (287)
..+...++++||.+.+ ++.+||+..+..+.... +. ......+|.+|||||||||+|
T Consensus 83 A~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa 162 (228)
T COG4181 83 AALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFA 162 (228)
T ss_pred HHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhc
Confidence 1233447777776654 89999999876654311 11 113367999999999999999
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ 240 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~ 240 (287)
..|++|+.|| .+.+.+..+..+ .|+||||..++.+
T Consensus 163 ~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R 212 (228)
T COG4181 163 GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR 212 (228)
T ss_pred CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh
Confidence 7899999999 344444444332 4799999999987
No 37
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.7e-31 Score=247.86 Aligned_cols=175 Identities=19% Similarity=0.292 Sum_probs=133.5
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
|.+|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 1 m~~l~i~~l~~~~~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 1 MASVTLRNVTKAYGDVV----ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPA 73 (369)
T ss_pred CCEEEEEEEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHh
Confidence 45699999999998765 8999999999999999999999999999999999999 9999 88999765321 12
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
.+.+.+.+|...+ +++.+|+.++..... . .+. ....++.+.+|||||||||+| .+|+
T Consensus 74 ~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 2345666665433 689999987532110 0 000 113467899999999999998 8999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+||||| .+++.|.++.. .+|++|||++++.. |++ |+++..|+++++.
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999 34555555532 24799999998876 444 7878888888774
No 38
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.96 E-value=9.4e-31 Score=243.61 Aligned_cols=174 Identities=20% Similarity=0.336 Sum_probs=135.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~ 154 (287)
+|+++||++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|+++... ..++
T Consensus 2 ~L~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGRTQ----VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDR 74 (353)
T ss_pred EEEEEEEEEEeCCeE----EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHHC
Confidence 589999999998765 8999999999999999999999999999999999999 9999 99999865321 1234
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCcee----ecc--------------CC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVY----APS--------------FD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~----~~~--------------~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.+.+.||...+ +++.+|+.++.... ... +. ....++++.+|||||||||+| .+
T Consensus 75 ~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~ 154 (353)
T PRK10851 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVE 154 (353)
T ss_pred CEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 56667766543 69999998864321 000 00 113468899999999999998 89
Q ss_pred CCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
|++||||| .+++.|.++.. ..|+||||++++.. |++ |++++.|++.++..
T Consensus 155 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 155 PQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999 44555555543 24799999999887 554 78888898888743
No 39
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1e-30 Score=230.44 Aligned_cols=171 Identities=22% Similarity=0.350 Sum_probs=127.0
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------H
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------A 150 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------~ 150 (287)
|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (235)
T cd03261 1 IELRGLTKSFGGRT----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELY 73 (235)
T ss_pred CeEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhHH
Confidence 46899999998655 9999999999999999999999999999999999999 9999 8899976422 1
Q ss_pred hhhCCCCCCCChhHH---HHHHHHHhcCCcee--ec-------------cCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 151 HARRGAPWTFNPLLL---LNCLKNLRNQGSVY--AP-------------SFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~--~~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+..+.+.+|...+ +++.+|+.++.... .. .+. ....++.+.+|||||+|||+| .
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~ 153 (235)
T cd03261 74 RLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL 153 (235)
T ss_pred HHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 223345555554332 68889887642111 00 000 112367889999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
+|+++|||| .+++.|.++.. .+|++|||++++.. |++ |++++.|++.++
T Consensus 154 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999 45556665532 24699999998865 443 677777877665
No 40
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.4e-29 Score=209.45 Aligned_cols=175 Identities=17% Similarity=0.236 Sum_probs=138.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH-----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK----- 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~----- 148 (287)
++.|+++|+.|+||... +|++||++-.+|++|.|||.+|||||||++||.=+.. |+.| |.++|+.+.
T Consensus 4 ~~~l~v~dlHK~~G~~e----VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~---P~~G~I~v~geei~~k~~~ 76 (256)
T COG4598 4 ENALEVEDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKRDK 76 (256)
T ss_pred ccceehhHHHhhcccch----hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC---CCCceEEECCeEEEeeeCC
Confidence 45699999999999987 9999999999999999999999999999999999999 9999 889887421
Q ss_pred ----------H-HhhhCCCCCCCChhHH---HHHHHHHhcCCce--eeccC--------------CccCCCCCCCceecc
Q 023106 149 ----------E-AHARRGAPWTFNPLLL---LNCLKNLRNQGSV--YAPSF--------------DHGVGDPVEDDILVG 198 (287)
Q Consensus 149 ----------~-~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~--~~~~~--------------~~~~~~~~~~~LSgG 198 (287)
. .+.+...+++||.+++ +|+++|+....-- ..+.. -....+.||..||||
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGG 156 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGG 156 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCch
Confidence 1 1223346677777665 8999998764210 00000 012346899999999
Q ss_pred ccceEEE-----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCc
Q 023106 199 LQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 199 ekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~ 252 (287)
|+||++| .+|.++|+|| ++++.++++..+ .++|||.|.++.. .++ |.+-++|+|
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCCh
Confidence 9999999 8999999999 677777777765 4799999999987 444 777779999
Q ss_pred HHHH
Q 023106 253 PDVA 256 (287)
Q Consensus 253 ~~~~ 256 (287)
+++.
T Consensus 237 ~qvf 240 (256)
T COG4598 237 EQVF 240 (256)
T ss_pred HHHh
Confidence 9884
No 41
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.95 E-value=2.8e-30 Score=226.39 Aligned_cols=170 Identities=18% Similarity=0.203 Sum_probs=124.4
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh-----cccCCCcc-eeeCCCCHHH--
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll-----~~~~p~~G-i~~~g~~~~~-- 149 (287)
|+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|++ + |++| +.++|.++..
T Consensus 1 i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~~ 73 (227)
T cd03260 1 IELRDLNVYYGDKH----ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDLD 73 (227)
T ss_pred CEEEEEEEEcCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhcc
Confidence 47899999998765 999999999999999999999999999999999999 8 9999 8999987532
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceee-c--------------cCCc-cCCCCC--CCceeccccceEEE-
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-P--------------SFDH-GVGDPV--EDDILVGLQHKVVI- 205 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~--------------~~~~-~~~~~~--~~~LSgGekqRv~I- 205 (287)
...+..+.+.+|...+ .++.+|+.+...... . .+.- ...++. +.+|||||+||++|
T Consensus 74 ~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 153 (227)
T cd03260 74 VDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA 153 (227)
T ss_pred hHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHH
Confidence 1223345555555433 688898876422110 0 0000 011233 69999999999988
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
.+|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|++++
T Consensus 154 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 8999999999 45566665544 35799999998865 443 66666666543
No 42
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.95 E-value=3.1e-30 Score=238.23 Aligned_cols=180 Identities=16% Similarity=0.214 Sum_probs=133.8
Q ss_pred ccEEEecCchhhhhhhh---------hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC
Q 023106 75 IPVVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS 144 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~---------~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g 144 (287)
.++|+++||++.|+... ....+++|+||+|.+|+++||+|+||||||||+++|+|+++ |++| |.++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~G 82 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWLG 82 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEECC
Confidence 45899999999996311 12348999999999999999999999999999999999999 9999 99999
Q ss_pred CCHHH------HhhhCCCCCCCChhH-----HHHHHHHHhcCCceee---c---------------cCCccCCCCCCCce
Q 023106 145 QDPKE------AHARRGAPWTFNPLL-----LLNCLKNLRNQGSVYA---P---------------SFDHGVGDPVEDDI 195 (287)
Q Consensus 145 ~~~~~------~~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~~---~---------------~~~~~~~~~~~~~L 195 (287)
.++.. ...+..+.+++|... .+++.+|+.+...... . .......++++.+|
T Consensus 83 ~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~L 162 (331)
T PRK15079 83 KDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEF 162 (331)
T ss_pred EECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccC
Confidence 86521 112345667777641 2678888764211100 0 01112347899999
Q ss_pred eccccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhc
Q 023106 196 LVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 196 SgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~ 248 (287)
||||+|||+| .+|++||+|| .+++.|.++.+ ..|+||||++++.. |++ |++++
T Consensus 163 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999998 9999999999 45555555533 24799999999986 444 88888
Q ss_pred CCCcHHHHH
Q 023106 249 TGKPPDVAK 257 (287)
Q Consensus 249 ~G~~~~~~~ 257 (287)
.|++.++..
T Consensus 243 ~g~~~~i~~ 251 (331)
T PRK15079 243 LGTYDEVYH 251 (331)
T ss_pred EcCHHHHHc
Confidence 898877753
No 43
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.95 E-value=7.7e-30 Score=243.82 Aligned_cols=179 Identities=22% Similarity=0.290 Sum_probs=133.8
Q ss_pred ccEEEecCchhhhhhh-------hhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 75 IPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~-------~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
-++++++||+|.|... ...+.+++||||++.+||++||||+||||||||.|+|+|+++ |++| +.++|.+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~~ 354 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQD 354 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCcc
Confidence 4689999999999742 123568999999999999999999999999999999999999 9999 8898876
Q ss_pred H--HH---HhhhCCCCCCCChhH-----HHHHHHHHhcCCceeec-----------------cCCccCCCCCCCceeccc
Q 023106 147 P--KE---AHARRGAPWTFNPLL-----LLNCLKNLRNQGSVYAP-----------------SFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 147 ~--~~---~~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~~~-----------------~~~~~~~~~~~~~LSgGe 199 (287)
. .. ...+..+...||++. -+|+.+.+......+.. .......+++|++|||||
T Consensus 355 ~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQ 434 (539)
T COG1123 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQ 434 (539)
T ss_pred cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcch
Confidence 2 11 112223444555432 27888877765433211 111124579999999999
Q ss_pred cceEEE-----ecCCEEeEec-----------chHHHHHhccC---C-eEEEEcChHHHHH---HHH----HHHhcCCCc
Q 023106 200 QHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---E-KWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 200 kqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~-~i~vtHd~~~~~~---rvi----gr~i~~G~~ 252 (287)
||||+| .+|.++++|| .+++.|.++.+ . .+|||||++.+.. |++ |++++.|+.
T Consensus 435 rQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~ 514 (539)
T COG1123 435 RQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPT 514 (539)
T ss_pred hHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCH
Confidence 999999 9999999999 44555554443 3 3799999999988 555 999999966
Q ss_pred HHHH
Q 023106 253 PDVA 256 (287)
Q Consensus 253 ~~~~ 256 (287)
+++.
T Consensus 515 ~~v~ 518 (539)
T COG1123 515 EKVF 518 (539)
T ss_pred HHHh
Confidence 6663
No 44
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.95 E-value=2e-30 Score=237.03 Aligned_cols=175 Identities=19% Similarity=0.257 Sum_probs=130.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--Hhhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~ 153 (287)
+|+++||++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 4 ~i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 4 AIDLVGVSKSYGDKV----VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred EEEEEeEEEEeCCeE----EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHHHh
Confidence 699999999998765 9999999999999999999999999999999999999 9999 8899976421 1122
Q ss_pred CCCCCCCChhH---HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 154 RGAPWTFNPLL---LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 154 ~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
..+++.+|... .+++.+|+.+...... . .+. ....++.+.+|||||||||.| .+|++
T Consensus 77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 156 (303)
T TIGR01288 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQL 156 (303)
T ss_pred hcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 33444444432 2578888764221110 0 010 012367889999999999988 89999
Q ss_pred EeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
||||| .+++.|.++... ++++|||++++.. |++ |+++..|+++++...
T Consensus 157 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 157 LILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999 456666665332 4699999999876 444 787788888877543
No 45
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.9e-30 Score=236.58 Aligned_cols=183 Identities=14% Similarity=0.221 Sum_probs=128.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc-CCCcc-eeeCCCCHHH---
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~-~p~~G-i~~~g~~~~~--- 149 (287)
|.+|+++||++.|+.......+|+||||+|.+|+++||+|+||||||||+++|+|+++.. .+++| +.++|.++..
T Consensus 1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 457999999999976322234899999999999999999999999999999999998610 12788 8999986421
Q ss_pred --Hh--hhCCCCCCCChhH-----HHHHH----HHHhcCCcee-------------eccCCc--cCCCCCCCceeccccc
Q 023106 150 --AH--ARRGAPWTFNPLL-----LLNCL----KNLRNQGSVY-------------APSFDH--GVGDPVEDDILVGLQH 201 (287)
Q Consensus 150 --~~--~~~~~~~~~~~~~-----~~tv~----e~l~~~~~~~-------------~~~~~~--~~~~~~~~~LSgGekq 201 (287)
.. +...+.+++|... .+++. +++....... ...... ...++++.+|||||+|
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 11 1224556666531 12333 3332211000 000110 1235789999999999
Q ss_pred eEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 202 KVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 202 Rv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
||+| .+|++||+|| .+++.|.++.+ ..|+||||++++.. |++ |++++.|++.+
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~ 240 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9998 8999999999 45666666543 25799999999876 554 89999999888
Q ss_pred HHH
Q 023106 255 VAK 257 (287)
Q Consensus 255 ~~~ 257 (287)
+..
T Consensus 241 ~~~ 243 (326)
T PRK11022 241 IFR 243 (326)
T ss_pred Hhh
Confidence 753
No 46
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.6e-30 Score=240.00 Aligned_cols=177 Identities=20% Similarity=0.269 Sum_probs=130.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----H
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~ 150 (287)
||+++||+++|++......+|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHH
Confidence 48999999999721101238999999999999999999999999999999999999 9999 8999976431 1
Q ss_pred -hhhCCCCCCCChhHH---HHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 151 -HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+..+++.+|...+ +++.+|+.++...... .+. ....++++.+|||||||||+| .
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 123445566655432 6888988764221100 000 112357889999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999 45666666542 24699999999875 444 7777788877764
No 47
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.95 E-value=6.8e-30 Score=227.08 Aligned_cols=175 Identities=15% Similarity=0.250 Sum_probs=127.3
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
|+||+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 m~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 1 MSAIEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSL 73 (250)
T ss_pred CCcEEEeceEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccccc
Confidence 45799999999998655 9999999999999999999999999999999999999 9999 8888875421
Q ss_pred -------HhhhCCCCCCCChhHH---HHHHHHHhcCCc----eee-----------ccCC-ccCCCCCCCceeccccceE
Q 023106 150 -------AHARRGAPWTFNPLLL---LNCLKNLRNQGS----VYA-----------PSFD-HGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 150 -------~~~~~~~~~~~~~~~~---~tv~e~l~~~~~----~~~-----------~~~~-~~~~~~~~~~LSgGekqRv 203 (287)
...+..+.+.+|...+ .++.+|+.++.. ... ..+. ....++.+.+|||||+|||
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHH
Confidence 1122344555554322 578888764211 000 0000 0123578899999999999
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 88 8999999999 34555555433 24699999998865 443 6777778776653
No 48
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=9.2e-30 Score=232.75 Aligned_cols=178 Identities=15% Similarity=0.244 Sum_probs=131.9
Q ss_pred EEEecCchhhhhhhhh-ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH------
Q 023106 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK------ 148 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~-~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~------ 148 (287)
+|+++||++.|++... ...+|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEeceecccccccc
Confidence 5899999999975310 1238999999999999999999999999999999999999 9999 888875431
Q ss_pred ---------------------HHhhhCCCCCCCChh--H--HHHHHHHHhcCCceee----------------ccCCccC
Q 023106 149 ---------------------EAHARRGAPWTFNPL--L--LLNCLKNLRNQGSVYA----------------PSFDHGV 187 (287)
Q Consensus 149 ---------------------~~~~~~~~~~~~~~~--~--~~tv~e~l~~~~~~~~----------------~~~~~~~ 187 (287)
....+..++++||.+ . ..++.+|+.++..... .......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 158 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY 158 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh
Confidence 112234466666642 1 2589999986532110 0111123
Q ss_pred CCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH--
Q 023106 188 GDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL-- 243 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi-- 243 (287)
.++.+.+|||||||||+| .+|++||||| .+++.|.++.+ .+|++|||++.+.. |++
T Consensus 159 ~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 159 LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 467899999999999998 8999999999 45555555533 24799999998876 554
Q ss_pred --HHHhcCCCcHHHHH
Q 023106 244 --KRHISTGKPPDVAK 257 (287)
Q Consensus 244 --gr~i~~G~~~~~~~ 257 (287)
|++++.|+++++..
T Consensus 239 ~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 239 KDGKIIKDGDTYDILS 254 (305)
T ss_pred ECCEEEEECCHHHHhc
Confidence 88888898888653
No 49
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.6e-30 Score=224.74 Aligned_cols=170 Identities=24% Similarity=0.360 Sum_probs=122.2
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--HhhhC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHARR 154 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~~ 154 (287)
|+++|+++.|++.. +|+|+||++.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...+.
T Consensus 1 i~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (220)
T cd03265 1 IEVENLVKKYGDFE----AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVRR 73 (220)
T ss_pred CEEEEEEEEECCEE----eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHhh
Confidence 47899999998755 9999999999999999999999999999999999999 9999 8898875421 11122
Q ss_pred CCCCCCChhH---HHHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 155 GAPWTFNPLL---LLNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 155 ~~~~~~~~~~---~~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
.+.+.+|... .+++.+|+.+....... .+. ....++++.+|||||+||++| .+|+++
T Consensus 74 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~ll 153 (220)
T cd03265 74 RIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVL 153 (220)
T ss_pred cEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 3444444432 25778887653211100 011 012367889999999999988 899999
Q ss_pred eEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 212 FLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
|||| .+++.|.++.. .+|++|||++++.. |++ |+++..|++++
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 154 FLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 9999 34555555432 24799999999876 433 56666665543
No 50
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.2e-29 Score=224.51 Aligned_cols=175 Identities=22% Similarity=0.352 Sum_probs=129.1
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
|.+|+++||++.|++.. +|+|+||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 1 MATLTAKNLAKAYKGRR----VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLH 73 (241)
T ss_pred CceEEEeCcEEEeCCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 45799999999998655 9999999999999999999999999999999999999 9999 8899875421
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceee--c-------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--P-------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--~-------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
...+.++.+.++...+ .++.+|+.+...... . .+. ....++.+.+|||||+|||+|
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 74 ARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred HHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 1123345555554332 588888876432110 0 000 012356788999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.+.++.. ..|++|||++.+.. +++ |++++.|+++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 8999999999 34455555432 24699999988865 333 7777788877764
No 51
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.95 E-value=5.6e-30 Score=233.92 Aligned_cols=175 Identities=15% Similarity=0.204 Sum_probs=132.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--Hhhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~ 153 (287)
+++++|++|+|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~ 74 (301)
T TIGR03522 2 SIRVSSLTKLYGTQN----ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEVQ 74 (301)
T ss_pred EEEEEEEEEEECCEE----EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHHH
Confidence 589999999998765 9999999999999999999999999999999999999 9999 9999976532 1223
Q ss_pred CCCCCCCChhH---HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 154 RGAPWTFNPLL---LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 154 ~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
..+++.++... .+++.+|+.+....+. + .+. ....++.+..|||||+|||.| .+|++
T Consensus 75 ~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (301)
T TIGR03522 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV 154 (301)
T ss_pred hceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 34555555432 2678888875332211 0 011 112367889999999999988 99999
Q ss_pred EeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
||||| .+++.+.++... ++++||+++++.. |++ |++++.|+++++...
T Consensus 155 liLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 155 LILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999 456666665432 4699999999876 444 788888988887543
No 52
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=1e-29 Score=228.15 Aligned_cols=181 Identities=16% Similarity=0.235 Sum_probs=130.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCcc-eeeCCCCHHH----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~--~~p~~G-i~~~g~~~~~---- 149 (287)
+|+++||+..|......+.+++||||+|.+||++||||.|||||||+.+.|+|+++. ..-.+| +.++|.++..
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 378999999996543345599999999999999999999999999999999999971 112467 8899986421
Q ss_pred -H--hhhCCCCCCCChhH-----HHHHHHHHhcCCceee------------------ccCCc--cCCCCCCCceeccccc
Q 023106 150 -A--HARRGAPWTFNPLL-----LLNCLKNLRNQGSVYA------------------PSFDH--GVGDPVEDDILVGLQH 201 (287)
Q Consensus 150 -~--~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~~------------------~~~~~--~~~~~~~~~LSgGekq 201 (287)
. .+...+.+.||++. .+++-+.+......+. -.... ...+.||++|||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 1 12223677777643 2333333322111110 01111 1336899999999999
Q ss_pred eEEE-----ecCCEEeEec-----------chHHHHHhccC---C-eEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 202 KVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---E-KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 202 Rv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~-~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
||.| .+|++||+|| ++++.|.++.+ . .+|||||+..+.+ |++ |++++.|++++
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~ 240 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEE 240 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHH
Confidence 9988 9999999999 45555555544 2 4699999999998 655 99999999998
Q ss_pred HHH
Q 023106 255 VAK 257 (287)
Q Consensus 255 ~~~ 257 (287)
+..
T Consensus 241 i~~ 243 (316)
T COG0444 241 IFK 243 (316)
T ss_pred Hhc
Confidence 854
No 53
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=2.8e-29 Score=216.38 Aligned_cols=176 Identities=17% Similarity=0.254 Sum_probs=136.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~ 154 (287)
++++++|+|+||++. +++|+||++++|++.|++|+|||||||++|+|+|++. |++| |.++|.++... +.+.
T Consensus 2 ~L~ie~vtK~Fg~k~----av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~I~~~g~~~~~~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGDKK----AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEIKNRI 74 (300)
T ss_pred ceEEecchhccCcee----eecceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCceEEEcCcchhhhhhhhc
Confidence 589999999999988 9999999999999999999999999999999999999 9999 99999987543 3333
Q ss_pred C-CCCCCChhHHHHHHHHHhcCCceeecc--------------CC-ccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 155 G-APWTFNPLLLLNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 155 ~-~~~~~~~~~~~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
| .|..-..+.-+++.|.+.+.+.+.... ++ .....+.+.+||-|++|++.+ ++|+++||
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlIL 154 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLIL 154 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence 3 233222333378889888765554221 11 123356889999999999976 99999999
Q ss_pred ec----------c-hHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHHH
Q 023106 214 DG----------G-VWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 214 DE----------~-~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~~ 259 (287)
|| + +.+.+.++.+. +||.||-|+.+.+ +++ |+.+.+|+.+++...+
T Consensus 155 DEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred cCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 99 2 22334444443 5799999999987 665 7888899998886644
No 54
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.95 E-value=2.3e-29 Score=219.00 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=117.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA----- 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~----- 150 (287)
||+++|+++.|++.. ..+|+++||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++...
T Consensus 1 ~l~~~~l~~~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 1 MIRFEQVSKAYPGGH--QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRGREI 75 (216)
T ss_pred CeEEEEEEEEecCCC--eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcChhHH
Confidence 488999999996421 128999999999999999999999999999999999999 9999 89999865321
Q ss_pred -hhhCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 151 -HARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..++.+.+.+|...+ +++.+|+.+...... ..+. ....++.+.+|||||+|||+| .
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 155 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVH 155 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 123345566655432 588888876421110 0011 112367889999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+|++||||| .+++.|.++.+ .+|++|||++++..
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~ 203 (216)
T TIGR00960 156 KPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVET 203 (216)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999 45555555532 24799999998864
No 55
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.1e-29 Score=223.04 Aligned_cols=175 Identities=18% Similarity=0.161 Sum_probs=129.5
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---H
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---A 150 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~ 150 (287)
|.+|+++|+++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 73 (241)
T PRK14250 1 MNEIEFKEVSYSSFGKE----ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVI 73 (241)
T ss_pred CceEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChH
Confidence 45799999999997655 8999999999999999999999999999999999999 9999 8899976532 1
Q ss_pred hhhCCCCCCCChhHH--HHHHHHHhcCCceee----------ccCCc--cCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 151 HARRGAPWTFNPLLL--LNCLKNLRNQGSVYA----------PSFDH--GVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~----------~~~~~--~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
..+..+.+.+|...+ .++.+|+.+...... ..+.- ...++.+.+|||||+||++| .+|+++
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 153 (241)
T PRK14250 74 DLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVL 153 (241)
T ss_pred HhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 122344555554322 588888875422110 01111 12357889999999999988 899999
Q ss_pred eEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 212 FLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|||| .+.+.|.++.+ .+|++|||++++.. |++ |+++..|++.++.
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 154 LLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 9999 34455555432 24799999999765 443 6777778777763
No 56
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.2e-29 Score=209.71 Aligned_cols=159 Identities=18% Similarity=0.271 Sum_probs=124.0
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
|.++.+++++..|+++. ..+|+|+|++|.+|+.+.++||||||||||+++++|+.. |..| +.++|..+..--..
T Consensus 1 M~~l~~~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPgae 75 (259)
T COG4525 1 MCMLNVSHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPGAE 75 (259)
T ss_pred CceeehhheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCCcc
Confidence 55788999999998764 448999999999999999999999999999999999999 9999 88998866433333
Q ss_pred CCCCCCCChhH---HHHHHHHHhcCCceeeccCC---------------ccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 154 RGAPWTFNPLL---LLNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 154 ~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
+| .+||.+. .+++.+|+.++..+...... .+..++++-+|||||+|||-| .+|++
T Consensus 76 rg--vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~ 153 (259)
T COG4525 76 RG--VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL 153 (259)
T ss_pred ce--eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce
Confidence 44 3555544 48999999998665421100 124478999999999999988 89999
Q ss_pred EeEec-----------chHHHHHhcc----CCeEEEEcChHHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMF----DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~----~~~i~vtHd~~~~~~ 240 (287)
|+||| .+.+.+.+++ +..++||||++++.-
T Consensus 154 LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlf 198 (259)
T COG4525 154 LLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALF 198 (259)
T ss_pred EeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHh
Confidence 99999 2223333333 235799999999986
No 57
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.95 E-value=3.3e-29 Score=221.70 Aligned_cols=172 Identities=22% Similarity=0.308 Sum_probs=127.3
Q ss_pred EEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
||+++||++.|+ +.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~~----il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQ----ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGKK 73 (243)
T ss_pred CeEEEeeeeecCCCcc----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHHH
Confidence 488999999997 544 8999999999999999999999999999999999999 9999 8999976532
Q ss_pred -HhhhCCCCCCCChhH---HHHHHHHHhcCCcee---------e-cc------------CC-ccCCCCCCCceeccccce
Q 023106 150 -AHARRGAPWTFNPLL---LLNCLKNLRNQGSVY---------A-PS------------FD-HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~---------~-~~------------~~-~~~~~~~~~~LSgGekqR 202 (287)
...+..+.+.+|... .+++.+|+.++.... . .. +. ....++.+.+|||||+||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 153 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQR 153 (243)
T ss_pred HHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHH
Confidence 112333555555432 268889987542110 0 00 00 012356789999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
|+| .+|++||||| .+.+.|.++.+ .+|++|||++++.. +++ |++++.|+++++
T Consensus 154 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 998 8999999999 44555555532 24699999999865 443 777778887765
No 58
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.2e-29 Score=230.32 Aligned_cols=178 Identities=18% Similarity=0.205 Sum_probs=131.5
Q ss_pred EEEecCchhhhhhhhh-ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH------
Q 023106 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK------ 148 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~-~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~------ 148 (287)
||+++||++.|+.... ...+|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4899999999974210 1238999999999999999999999999999999999999 9999 899997642
Q ss_pred -HHhhhCCCCCCCChh--HH--HHHHHHHhcCCceee-c-------------cCC--ccCCCCCCCceeccccceEEE--
Q 023106 149 -EAHARRGAPWTFNPL--LL--LNCLKNLRNQGSVYA-P-------------SFD--HGVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 149 -~~~~~~~~~~~~~~~--~~--~tv~e~l~~~~~~~~-~-------------~~~--~~~~~~~~~~LSgGekqRv~I-- 205 (287)
....+..+++++|.+ .+ .++.+|+.++..... + .+. ....++.+..||||||||++|
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~ 157 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAG 157 (288)
T ss_pred cHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHH
Confidence 112233455666643 11 588999876532110 0 011 113367889999999999998
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.+.++.+ .+|++|||++++.. |++ |++++.|+++++..
T Consensus 158 aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 158 ILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 8999999999 44555555433 24699999998865 554 78888898888753
No 59
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.5e-29 Score=222.11 Aligned_cols=172 Identities=21% Similarity=0.265 Sum_probs=127.4
Q ss_pred EEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------
Q 023106 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------ 149 (287)
Q Consensus 78 i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------ 149 (287)
|+++||++.|++ .. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYPNGKK----ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecCCccE----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhHH
Confidence 468999999976 44 8999999999999999999999999999999999999 9999 8999976532
Q ss_pred HhhhCCCCCCCChhH---HHHHHHHHhcCCcee---------ec-------------cCC-ccCCCCCCCceeccccceE
Q 023106 150 AHARRGAPWTFNPLL---LLNCLKNLRNQGSVY---------AP-------------SFD-HGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~---------~~-------------~~~-~~~~~~~~~~LSgGekqRv 203 (287)
...+..+.+.+|... ..++.+|+.+..... .. .+. ....++.+.+|||||+|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRV 153 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHH
Confidence 112334555555432 268888887532100 00 000 0123567899999999999
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+| .+|++||||| .+++.|.++.+ .+|++|||++++.. +++ |++++.|+++++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 88 8999999999 45566666532 24699999999875 443 7777788877764
No 60
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=4.9e-29 Score=215.33 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=117.3
Q ss_pred EecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCC
Q 023106 79 EARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGA 156 (287)
Q Consensus 79 ~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~ 156 (287)
+++||++.|++ .. +|+++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.....+..+
T Consensus 1 ~~~~l~~~~~~~~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i 73 (205)
T cd03226 1 RIENISFSYKKGTE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSI 73 (205)
T ss_pred CcccEEEEeCCcCc----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcce
Confidence 36899999976 55 8999999999999999999999999999999999999 9999 88999876433333445
Q ss_pred CCCCChhH----HHHHHHHHhcCCceeec----------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-
Q 023106 157 PWTFNPLL----LLNCLKNLRNQGSVYAP----------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG- 215 (287)
Q Consensus 157 ~~~~~~~~----~~tv~e~l~~~~~~~~~----------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE- 215 (287)
.+.+|... ..++.+|+.+....... .+. ....++.+..|||||+||++| .+|+++||||
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 153 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEP 153 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 66666531 25889998764321100 010 112367889999999999988 8999999999
Q ss_pred ----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 216 ----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+++.|.++.+ ..+++|||++++..
T Consensus 154 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~ 191 (205)
T cd03226 154 TSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAK 191 (205)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 45555555532 24699999998764
No 61
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.1e-29 Score=223.58 Aligned_cols=176 Identities=19% Similarity=0.245 Sum_probs=126.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------ 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------ 149 (287)
||+++|+++.|++......+|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence 48899999999765100128999999999999999999999999999999999999 9999 8999986421
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
...+..+.+.+|...+ +++.+|+.+....... .+. ....++.+..|||||+|||+| .
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 1123345555554332 5788888653211100 000 112356789999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
+|+++|||| .+++.|.++.+ .+|++|||++++.. +++ |++++.|+++++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999 45556655532 24699999998865 333 677777766554
No 62
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.5e-29 Score=233.46 Aligned_cols=180 Identities=17% Similarity=0.202 Sum_probs=131.2
Q ss_pred ccEEEecCchhhhhhhh------hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 75 IPVVEARCMDEVYDALA------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~------~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
+++|+++||++.|+... ....+|+||||+|.+|+++||+|+||||||||+++|+|+++ |++| +.++|.++
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l 79 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL 79 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence 35799999999996311 01348999999999999999999999999999999999999 9999 89999764
Q ss_pred HH------HhhhCCCCCCCChhH--H---HHHHHHHhcCCce----e-------------eccCCccCCCCCCCceeccc
Q 023106 148 KE------AHARRGAPWTFNPLL--L---LNCLKNLRNQGSV----Y-------------APSFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 148 ~~------~~~~~~~~~~~~~~~--~---~tv~e~l~~~~~~----~-------------~~~~~~~~~~~~~~~LSgGe 199 (287)
.. ...+..+.++||... + +++.+++...... . .........++++.+|||||
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence 21 122334666666542 1 4555555321100 0 00111123467899999999
Q ss_pred cceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCc
Q 023106 200 QHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 200 kqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~ 252 (287)
+|||+| .+|++||+|| .+++.|.++.+ ..|+||||++++.. |++ |++++.|++
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~ 239 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTK 239 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999998 8999999999 45566655533 24799999999976 554 888999988
Q ss_pred HHHHH
Q 023106 253 PDVAK 257 (287)
Q Consensus 253 ~~~~~ 257 (287)
+++..
T Consensus 240 ~~~~~ 244 (327)
T PRK11308 240 EQIFN 244 (327)
T ss_pred HHHhc
Confidence 88754
No 63
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.95 E-value=6.9e-30 Score=222.79 Aligned_cols=170 Identities=19% Similarity=0.284 Sum_probs=122.5
Q ss_pred EEecCchhhhhh--hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--Hhh
Q 023106 78 VEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHA 152 (287)
Q Consensus 78 i~~~~l~~~y~~--~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~ 152 (287)
|+++||++.|++ .. +|+++||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKKGTKP----AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCCCCce----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHHH
Confidence 478999999976 44 8999999999999999999999999999999999999 9999 8899976532 112
Q ss_pred hCCCCCCCChhH---HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLL---LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
...+.+.+|... ..++.+|+.+...... . .+. ....++.+.+||+||+|||+| .+|+
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPS 153 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC
Confidence 223444554432 2577888765321110 0 011 012356788999999999988 8999
Q ss_pred EEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
++|||| .+++.|.++.+. +|++|||++.+.. +++ |++++.|++++
T Consensus 154 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 154 VLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 999999 455556555442 4699999998865 333 56666666544
No 64
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1.3e-28 Score=216.74 Aligned_cols=165 Identities=16% Similarity=0.240 Sum_probs=124.9
Q ss_pred ccEEEecCchhhhhhhhh-----ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQ-----RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~-----~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~ 148 (287)
+++++++||+|.|..... .+.+++||||+|++||++||||+||||||||.|+|+|+++ |++| |+++|+++.
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~i~f~g~~i~ 78 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE---PTSGEILFEGKDIT 78 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC---CCCceEEEcCcchh
Confidence 458999999999964311 2468999999999999999999999999999999999999 9999 999998863
Q ss_pred HHhhhCCCCCCCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec--------
Q 023106 149 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-------- 215 (287)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-------- 215 (287)
... ..-....+...++.+. .......+++++|||||+||+.| .+|+++++||
T Consensus 79 ~~~------~~~~~~~v~elL~~Vg---------l~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvS 143 (268)
T COG4608 79 KLS------KEERRERVLELLEKVG---------LPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVS 143 (268)
T ss_pred hcc------hhHHHHHHHHHHHHhC---------CCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchh
Confidence 321 0000011223333322 22345568999999999999998 8999999999
Q ss_pred ---chHHHHHhcc---CC-eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 216 ---GVWKDVSSMF---DE-KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 216 ---~~~~~l~~~~---~~-~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+++.+.++. .. .+|+|||+..+.. |++ |++++.|..+++..
T Consensus 144 iqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 144 VQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 3444444443 33 3699999999987 554 89999999888754
No 65
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.2e-29 Score=228.87 Aligned_cols=177 Identities=12% Similarity=0.154 Sum_probs=131.8
Q ss_pred EEEecCchhhhhhhhh-ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~-~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
.|+++||++.|++... ...+|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4899999999974210 1238999999999999999999999999999999999999 9999 9999986521
Q ss_pred --HhhhCCCCCCCChh--H--HHHHHHHHhcCCceee-c-------------cCC--ccCCCCCCCceeccccceEEE--
Q 023106 150 --AHARRGAPWTFNPL--L--LLNCLKNLRNQGSVYA-P-------------SFD--HGVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~--~--~~tv~e~l~~~~~~~~-~-------------~~~--~~~~~~~~~~LSgGekqRv~I-- 205 (287)
...+..+++.+|.. . ..++.+|+.++..... . .+. ....++.+.+|||||+|||+|
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAr 158 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAG 158 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 12233456666643 1 2699999976422100 0 111 122367899999999999998
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++.. .+|++|||++++.. |++ |++++.|++.++.
T Consensus 159 aL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 159 VLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999 45566665533 24799999999876 554 7888888887764
No 66
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.95 E-value=1.8e-29 Score=220.35 Aligned_cols=171 Identities=21% Similarity=0.294 Sum_probs=125.5
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----Hhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----AHA 152 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~~~ 152 (287)
|+++||++.|++.. +|+++||++.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (222)
T cd03224 1 LEVENLNAGYGKSQ----ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERA 73 (222)
T ss_pred CEEeeEEeecCCee----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHHH
Confidence 47899999998655 8999999999999999999999999999999999999 9999 8999975421 112
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceee------------ccCC--ccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYA------------PSFD--HGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~------------~~~~--~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
+..+.+.+|...+ +++.+|+.+...... ..+. ....++.+.+|||||+||++| .+|++
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 153 (222)
T cd03224 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL 153 (222)
T ss_pred hcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 3345555554332 588888876432110 0010 112357788999999999988 89999
Q ss_pred EeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
+|||| .+++.|.++.+ .+|++|||++++.. +++ |+++..|+++++
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 154 LLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999 45566665542 24699999998865 333 666666665544
No 67
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.9e-29 Score=229.01 Aligned_cols=178 Identities=16% Similarity=0.231 Sum_probs=132.2
Q ss_pred EEEecCchhhhhhhh-hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~-~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
+|+++||++.|++.. ....+|+||||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCCcCccH
Confidence 489999999997421 01238999999999999999999999999999999999999 9999 8999976532
Q ss_pred HhhhCCCCCCCChhH----HHHHHHHHhcCCceee--------------ccCCc---cCCCCCCCceeccccceEEE---
Q 023106 150 AHARRGAPWTFNPLL----LLNCLKNLRNQGSVYA--------------PSFDH---GVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~--------------~~~~~---~~~~~~~~~LSgGekqRv~I--- 205 (287)
...+..+++.+|... ..++.+|+.++..... ..+.- ...++.+..|||||+||++|
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAra 158 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGV 158 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHH
Confidence 122334556666431 2588999876422110 00111 23467899999999999998
Q ss_pred --ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|.++.. .+|++|||++++.. |++ |++++.|++.++..
T Consensus 159 L~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 159 VAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 45666665543 24699999999865 554 78888898887653
No 68
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.95 E-value=1.5e-29 Score=222.39 Aligned_cols=171 Identities=21% Similarity=0.334 Sum_probs=124.9
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----Hhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----AHA 152 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~~~ 152 (287)
|+++||++.|++.. +|+++||++.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03218 1 LRAENLSKRYGKRK----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKRA 73 (232)
T ss_pred CeEEEEEEEeCCEE----eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHHH
Confidence 46899999998655 8999999999999999999999999999999999999 9999 8899876422 112
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
+.++.+.+|...+ +++.+|+.+....... .+. ....++.+..|||||+||++| .+|+
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 153 (232)
T cd03218 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK 153 (232)
T ss_pred hccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 2334455554322 5788888753211100 000 012357788999999999988 8999
Q ss_pred EEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
+||||| .+++.|.++.. ..|++|||++.+.. +++ |+++..|+.+++
T Consensus 154 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999 44555555433 24699999998876 443 677677776655
No 69
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.3e-29 Score=228.40 Aligned_cols=178 Identities=16% Similarity=0.204 Sum_probs=130.7
Q ss_pred EEEecCchhhhhhhh-hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~-~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
+|+++||++.|++.. ....+|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 689999999997421 01238999999999999999999999999999999999999 9999 9999976421
Q ss_pred --HhhhCCCCCCCChh--HH--HHHHHHHhcCCceee--------------ccCCc--cCCCCCCCceeccccceEEE--
Q 023106 150 --AHARRGAPWTFNPL--LL--LNCLKNLRNQGSVYA--------------PSFDH--GVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~--~~--~tv~e~l~~~~~~~~--------------~~~~~--~~~~~~~~~LSgGekqRv~I-- 205 (287)
...+.++++.+|.. .+ .++.+|+.++..... ..+.- ...++.+.+||||||||++|
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~lar 158 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAG 158 (287)
T ss_pred hHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHH
Confidence 12233456666643 12 588899875321100 00111 13367889999999999998
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|.++.+ .+|++|||++.+.. |++ |++++.|+++++..
T Consensus 159 al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 159 VMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 8999999999 45555555543 24699999999876 444 77778888777643
No 70
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.5e-29 Score=222.58 Aligned_cols=175 Identities=18% Similarity=0.163 Sum_probs=129.4
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~ 148 (287)
|++|+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ | ++| +.++|.++.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 1 MNKIEIRDLKVSFGQVE----VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE---LYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred CceEEEEeeEEEECCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCCCCceEEEECCEECC
Confidence 56799999999998755 8999999999999999999999999999999999987 5 589 889997642
Q ss_pred H---HhhhCCCCCCCChhH---HHHHHHHHhcCCceee---c-------------cCCc-----cCCCCCCCceeccccc
Q 023106 149 E---AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYA---P-------------SFDH-----GVGDPVEDDILVGLQH 201 (287)
Q Consensus 149 ~---~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~---~-------------~~~~-----~~~~~~~~~LSgGekq 201 (287)
. ...+.++.+.+|... ..++.+|+.+...... . .+.- ...++.+.+|||||+|
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 74 KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQ 153 (250)
T ss_pred cCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHH
Confidence 1 122334555555533 2688888875421110 0 0000 1235678999999999
Q ss_pred eEEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 202 KVVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 202 Rv~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
||+| .+|+++|||| .+++.|.++.. ..|++|||++++.. |++ |++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 9988 8999999999 44555555433 24699999998765 444 7777888877764
No 71
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.95 E-value=9.5e-29 Score=214.67 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=115.5
Q ss_pred EecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCC
Q 023106 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAP 157 (287)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~ 157 (287)
+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++... +..+.
T Consensus 1 ~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~--~~~i~ 71 (213)
T cd03235 1 EVEDLTVSYGGHP----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKE--RKRIG 71 (213)
T ss_pred CcccceeEECCEE----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHH--HhheE
Confidence 3689999997654 8999999999999999999999999999999999999 9999 89999877532 23344
Q ss_pred CCCChhHH-----HHHHHHHhcCCceeec------------------cCC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 158 WTFNPLLL-----LNCLKNLRNQGSVYAP------------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 158 ~~~~~~~~-----~tv~e~l~~~~~~~~~------------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
+.+|...+ .++.+|+.+....... .+. ....++.+.+|||||+||++| .+|
T Consensus 72 ~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 151 (213)
T cd03235 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDP 151 (213)
T ss_pred EeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 45544321 5889998764321100 000 012356889999999999988 899
Q ss_pred CEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+++|||| .+++.|.++.+ .+|++|||++++..
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~ 197 (213)
T cd03235 152 DLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLE 197 (213)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9999999 45555655542 24799999998864
No 72
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.95 E-value=1.5e-29 Score=227.63 Aligned_cols=175 Identities=16% Similarity=0.262 Sum_probs=128.1
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
+++|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRC----IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMSRS 77 (269)
T ss_pred cceEEEeCeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccChh
Confidence 45799999999998655 8999999999999999999999999999999999999 9999 8899875421
Q ss_pred --HhhhCCCCCCCChhHH---HHHHHHHhcCCceee---------------ccCC-ccCCCCCCCceeccccceEEE---
Q 023106 150 --AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA---------------PSFD-HGVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~---------------~~~~-~~~~~~~~~~LSgGekqRv~I--- 205 (287)
...+..+.+.+|...+ +++.+|+.+...... ..+. ....++.+.+|||||+|||+|
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~lara 157 (269)
T PRK11831 78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARA 157 (269)
T ss_pred hHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 1112334444544322 577888765311000 0011 112356789999999999988
Q ss_pred --ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+++.|.++.. .+|++|||++++.. +++ |++++.|+++++.
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 158 IALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 8999999999 45555665532 24799999998865 433 6777778777654
No 73
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.95 E-value=1.2e-29 Score=223.61 Aligned_cols=171 Identities=27% Similarity=0.398 Sum_probs=125.3
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----Hhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----AHA 152 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~~~ 152 (287)
|+++||++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (236)
T cd03219 1 LEVRGLTKRFGGLV----ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEIA 73 (236)
T ss_pred CeeeeeEEEECCEE----EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHHH
Confidence 46899999998654 8999999999999999999999999999999999999 9999 8899875422 112
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeec------------------------cCC-ccCCCCCCCceeccccceEE
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAP------------------------SFD-HGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~------------------------~~~-~~~~~~~~~~LSgGekqRv~ 204 (287)
+.++.+.+|...+ +++.+|+.+....... .+. ....++.+.+|||||+|||+
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 153 (236)
T cd03219 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLE 153 (236)
T ss_pred hcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHH
Confidence 2345555554332 5888888654221100 000 01235778999999999998
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
| .+|+++|||| .+++.|.++.+ .+|++|||++++.. +++ |+++..|+++++
T Consensus 154 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 154 IARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 8 8999999999 45556655542 24799999999876 443 666667776665
No 74
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.95 E-value=3.2e-29 Score=224.11 Aligned_cols=174 Identities=19% Similarity=0.258 Sum_probs=128.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
||+++||++.|++.. +|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~~ 74 (258)
T PRK13548 2 MLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAEL 74 (258)
T ss_pred eEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHHh
Confidence 589999999998755 8999999999999999999999999999999999999 9999 8899875421 111
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE----e----
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI----V---- 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I----~---- 206 (287)
...+.+.++...+ .++.+|+.+....... .+. ....++.+.+|||||+|||+| .
T Consensus 75 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~ 154 (258)
T PRK13548 75 ARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWE 154 (258)
T ss_pred hhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 2234444444322 5888888764321100 000 012367889999999999988 4
Q ss_pred ---cCCEEeEec-----------chHHHHHhcc-C---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 207 ---DGNYLFLDG-----------GVWKDVSSMF-D---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ---~p~lLllDE-----------~~~~~l~~~~-~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+|+++|||| .+.+.|.++. + .+|++|||++++.. |++ |++++.|++.++..
T Consensus 155 ~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 155 PDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred cCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 899999999 4455666554 2 24799999999875 443 77777888777643
No 75
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1e-29 Score=220.67 Aligned_cols=156 Identities=19% Similarity=0.322 Sum_probs=115.9
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~~ 155 (287)
|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++... .....
T Consensus 1 l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGSVR----ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERRN 73 (213)
T ss_pred CeeeeeEEEeCCee----eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhcc
Confidence 46899999998755 8999999999999999999999999999999999999 9999 88999765321 11233
Q ss_pred CCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 156 APWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 156 ~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
+.+.+|...+ .++.+|+.+...... ..+. ....++.+.+||||||||++| .+|+++|
T Consensus 74 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ll 153 (213)
T cd03259 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL 153 (213)
T ss_pred EEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4555554332 578888865321110 0011 012356788999999999988 8999999
Q ss_pred Eec-----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 213 LDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
||| .+++.|.++.+ .++++|||++++..
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 196 (213)
T cd03259 154 LDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALA 196 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 999 45566665532 24699999998764
No 76
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.8e-29 Score=222.76 Aligned_cols=175 Identities=17% Similarity=0.225 Sum_probs=129.4
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
|++|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 3 KVMLSFDKVSAHYGKIQ----ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQTA 75 (237)
T ss_pred ccEEEEEeEEEeeCCce----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCHH
Confidence 45799999999998655 9999999999999999999999999999999999999 9999 8999976422
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceeec------------cCC--ccCCCCCCCceeccccceEEE-----ec
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP------------SFD--HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~------------~~~--~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
...+.++.+.++...+ .++.+|+.+....... .+. ....++.+..|||||+||++| .+
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred HHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 1123344444544322 5788888763211000 010 012246788999999999988 89
Q ss_pred CCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 99999999 44555555433 24699999998876 443 7778888887774
No 77
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.9e-29 Score=227.55 Aligned_cols=172 Identities=17% Similarity=0.215 Sum_probs=129.9
Q ss_pred EEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hh
Q 023106 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~ 151 (287)
+|+++||++.|+ +.. +|+|+||+|++|+++||+|+||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 4 ~l~~~~l~~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYKDGTK----ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeCCCCe----eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence 799999999996 333 8999999999999999999999999999999999999 9999 8999976422 11
Q ss_pred hhCCCCCCCChhH----HHHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 152 ARRGAPWTFNPLL----LLNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 152 ~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.+..+++.+|.+. ..++.+|+.++...... .+. ....++.+.+|||||+|||.| .+
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~ 156 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMD 156 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 2234566666531 15889999764221000 000 113467899999999999998 89
Q ss_pred CCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
|++||||| .+++.|.++.+ .++++|||++++.+ |++ |++++.|+++++
T Consensus 157 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 157 PDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999 45566665543 24699999999876 444 788888887654
No 78
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.3e-29 Score=223.98 Aligned_cols=173 Identities=21% Similarity=0.362 Sum_probs=127.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~ 154 (287)
+|+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..+.
T Consensus 2 ~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGDFV----ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQER 74 (239)
T ss_pred EEEEEeEEEEECCEE----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence 589999999998755 9999999999999999999999999999999999999 9999 88998764321 1123
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCceeec----c--------------CC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVYAP----S--------------FD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~~~----~--------------~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.+.+.+|...+ .++.+|+.+....... . +. ....++.+.+||+||+|||+| .+
T Consensus 75 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 154 (239)
T cd03296 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVE 154 (239)
T ss_pred ceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 34455554322 5888888764221100 0 00 012356788999999999988 89
Q ss_pred CCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|++||||| .+++.|.++.+ .+|++|||++.+.. |++ |+++..|+++++.
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 155 PKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999999 45555655532 24799999998765 443 6777778776653
No 79
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.2e-29 Score=232.76 Aligned_cols=183 Identities=15% Similarity=0.193 Sum_probs=129.9
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc-CCCcc-eeeCCCCHHH---
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~-~p~~G-i~~~g~~~~~--- 149 (287)
|++|+++||++.|+.......+|+||||+|.+|+++||+|+||||||||+++|+|+++.. .|++| +.++|+++..
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 468999999999953211233899999999999999999999999999999999998611 14789 8999976421
Q ss_pred --H--hhhCCCCCCCChhH-----HHHHHHHHhcCCc---eee-----------------c--cCCc--cCCCCCCCcee
Q 023106 150 --A--HARRGAPWTFNPLL-----LLNCLKNLRNQGS---VYA-----------------P--SFDH--GVGDPVEDDIL 196 (287)
Q Consensus 150 --~--~~~~~~~~~~~~~~-----~~tv~e~l~~~~~---~~~-----------------~--~~~~--~~~~~~~~~LS 196 (287)
. .+...+.++||... .+++.+++..... ... . .... ...++++.+||
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 1 11234666666532 2566666643100 000 0 0000 11257899999
Q ss_pred ccccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcC
Q 023106 197 VGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 197 gGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~ 249 (287)
|||+|||+| .+|++||+|| .+++.|.++.+ ..||||||++++.. |++ |++++.
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999998 8999999999 45666666543 24799999999976 444 888889
Q ss_pred CCcHHHHH
Q 023106 250 GKPPDVAK 257 (287)
Q Consensus 250 G~~~~~~~ 257 (287)
|+++++..
T Consensus 241 g~~~~i~~ 248 (330)
T PRK15093 241 APSKELVT 248 (330)
T ss_pred CCHHHHHh
Confidence 98887753
No 80
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.6e-29 Score=222.42 Aligned_cols=175 Identities=13% Similarity=0.190 Sum_probs=129.5
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~ 148 (287)
.++|+++|+++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++| +.++|.++.
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 5 EAIIETENLNLFYTDFK----ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND---LVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred CceEEEeeeEEEeCCce----eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCcCCCCceEEEECCEecc
Confidence 34799999999998655 8999999999999999999999999999999999998 7 478 889997642
Q ss_pred H-----HhhhCCCCCCCChhHH--HHHHHHHhcCCceeec---------------cCC-----ccCCCCCCCceeccccc
Q 023106 149 E-----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYAP---------------SFD-----HGVGDPVEDDILVGLQH 201 (287)
Q Consensus 149 ~-----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~---------------~~~-----~~~~~~~~~~LSgGekq 201 (287)
. ...+.++.+.+|...+ .++.+|+.++...... .+. ....++.+.+|||||||
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~q 157 (254)
T PRK14273 78 SNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQ 157 (254)
T ss_pred cccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHH
Confidence 1 1223445555554332 6888888764221100 000 01235678999999999
Q ss_pred eEEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 202 KVVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 202 Rv~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
||+| .+|++||||| .+++.|.++.. .+|++|||++++.. |++ |+++..|++.++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9998 8999999999 45555555533 24699999999865 443 7777888877764
No 81
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.95 E-value=3.5e-29 Score=218.02 Aligned_cols=159 Identities=19% Similarity=0.252 Sum_probs=115.6
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH------
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA------ 150 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~------ 150 (287)
|+++||++.|++......+|+++||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLSEKELA 77 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcchhHHH
Confidence 4689999999761000128999999999999999999999999999999999999 9999 88999865321
Q ss_pred -hhhCCCCCCCChhHH---HHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 151 -HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+..+.+.+|...+ +++.+|+.+....... .+. ....++.+.+|||||+|||+| .
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 78 AFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAN 157 (218)
T ss_pred HHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHcc
Confidence 122345555554332 5888888764321100 000 012356789999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
+|++||||| .+++.|.++.+ .+|++|||++++.
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 999999999 45566666543 2469999999863
No 82
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.95 E-value=2.2e-29 Score=223.58 Aligned_cols=173 Identities=17% Similarity=0.227 Sum_probs=127.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----cc-eeeCCCCHHH-
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KA-SSFDSQDPKE- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~-----~G-i~~~g~~~~~- 149 (287)
+|+++||++.|++.. +++|+||+|++|+++||+|+||||||||+++|+|+++ |+ +| +.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~~ 73 (247)
T TIGR00972 1 AIEIENLNLFYGEKE----ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYDK 73 (247)
T ss_pred CEEEEEEEEEECCee----eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEcccc
Confidence 488999999998755 8999999999999999999999999999999999998 88 99 8899976532
Q ss_pred ----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee---------------ccCCc-----cCCCCCCCceeccccceE
Q 023106 150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---------------PSFDH-----GVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---------------~~~~~-----~~~~~~~~~LSgGekqRv 203 (287)
...+..+.+.+|...+ .++.+|+.+...... ..+.- ...++.+..|||||+|||
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 153 (247)
T TIGR00972 74 KIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRL 153 (247)
T ss_pred ccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHH
Confidence 1223345555544322 577788765321110 00110 123567899999999999
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+| .+|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |+++..|+++++.
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 88 8999999999 44555555443 35799999998875 444 7777788877764
No 83
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=2.8e-28 Score=228.07 Aligned_cols=158 Identities=23% Similarity=0.301 Sum_probs=131.3
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH----HH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK----EA 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~----~~ 150 (287)
+.+++++++|.|++.. ++++|||+|.+|||.||+|.||||||||+++|.|+++ |++| |+++|+.+. ..
T Consensus 3 ~~l~~~~itK~f~~~~----And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP~d 75 (501)
T COG3845 3 PALEMRGITKRFPGVV----ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSPRD 75 (501)
T ss_pred ceEEEeccEEEcCCEE----ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCHHH
Confidence 4799999999999776 9999999999999999999999999999999999999 9999 999998653 23
Q ss_pred hhhCCCCCCCChhHH---HHHHHHHhcCCcee-eccCCc-----------------cCCCCCCCceeccccceEEE----
Q 023106 151 HARRGAPWTFNPLLL---LNCLKNLRNQGSVY-APSFDH-----------------GVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~-~~~~~~-----------------~~~~~~~~~LSgGekqRv~I---- 205 (287)
..+.|+++++|.+.+ +|+.||+.++.... ....+. -..+.++.+||.||||||.|
T Consensus 76 A~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaL 155 (501)
T COG3845 76 AIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKAL 155 (501)
T ss_pred HHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHH
Confidence 456788888888765 89999999886532 111111 12367899999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~ 240 (287)
.++++||||| ++++.++.+... +|||||-++++.+
T Consensus 156 yr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 156 YRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMA 205 (501)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence 8999999999 456666666554 5799999999987
No 84
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.9e-29 Score=225.89 Aligned_cols=173 Identities=18% Similarity=0.232 Sum_probs=127.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----H
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~ 150 (287)
||+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 1 ml~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 1 MLATSDLWFRYQDEP----VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred CeEEEEEEEEcCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCHH
Confidence 489999999998655 9999999999999999999999999999999999999 9999 8999976521 1
Q ss_pred hhhCCCCCCCChhH----HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 151 HARRGAPWTFNPLL----LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 ~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+..+.+.+|... ..++.+|+.+...... . .+. ....++.+.+|||||+||++| .
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~ 153 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL 153 (271)
T ss_pred HHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHc
Confidence 12234555555432 1356677654311100 0 000 012357889999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+|++||||| .+++.|.++.. .+|++|||++++.. |++ |++++.|+++++.
T Consensus 154 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 154 QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999 45555555532 24699999999865 443 7777888877764
No 85
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.3e-29 Score=226.49 Aligned_cols=178 Identities=15% Similarity=0.193 Sum_probs=132.1
Q ss_pred EEEecCchhhhhhhh-hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~-~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
.|+++||++.|++.. ....+|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 489999999996421 01238999999999999999999999999999999999999 9999 9999976521
Q ss_pred --HhhhCCCCCCCChhH--H--HHHHHHHhcCCcee-ec-------------cCCc--cCCCCCCCceeccccceEEE--
Q 023106 150 --AHARRGAPWTFNPLL--L--LNCLKNLRNQGSVY-AP-------------SFDH--GVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~--~--~tv~e~l~~~~~~~-~~-------------~~~~--~~~~~~~~~LSgGekqRv~I-- 205 (287)
...+..+++.+|... + .++.+|+.++.... .. .+.- ...++.+.+|||||+|||+|
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lar 158 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVS 158 (286)
T ss_pred hHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 122344666676531 1 58999998642110 00 0111 12357899999999999998
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.+.++.+ .+|++|||++++.. |++ |++++.|++.++..
T Consensus 159 aL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 45555665532 24799999999865 554 78888898887654
No 86
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.95 E-value=3.1e-29 Score=231.57 Aligned_cols=181 Identities=15% Similarity=0.227 Sum_probs=129.5
Q ss_pred CccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---cc-eeeCCCCHHH
Q 023106 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KA-SSFDSQDPKE 149 (287)
Q Consensus 74 ~~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~---~G-i~~~g~~~~~ 149 (287)
.+++|+++||++.|+.......+|+||||+|.+|+++||+|+||||||||+++|+|+++ |. +| |.++|.++..
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFNGREILN 85 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEECCEECCc
Confidence 35689999999999632112348999999999999999999999999999999999998 85 89 9999986421
Q ss_pred -----Hh--hhCCCCCCCChhH--H---HHHHHHHhcC----Ccee-------------eccCCc--cCCCCCCCceecc
Q 023106 150 -----AH--ARRGAPWTFNPLL--L---LNCLKNLRNQ----GSVY-------------APSFDH--GVGDPVEDDILVG 198 (287)
Q Consensus 150 -----~~--~~~~~~~~~~~~~--~---~tv~e~l~~~----~~~~-------------~~~~~~--~~~~~~~~~LSgG 198 (287)
.. +...+.++||... + +++.+++... .... ...... ...++++.+||||
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG 165 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGG 165 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHH
Confidence 11 1234666676642 1 3444444321 1000 001111 1125689999999
Q ss_pred ccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCC
Q 023106 199 LQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 199 ekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~ 251 (287)
|+|||+| .+|++||+|| .+++.|.++.+ ..||||||++.+.. |++ |++++.|+
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999998 9999999999 45555555533 24799999999875 544 89899999
Q ss_pred cHHHHH
Q 023106 252 PPDVAK 257 (287)
Q Consensus 252 ~~~~~~ 257 (287)
++++..
T Consensus 246 ~~~i~~ 251 (330)
T PRK09473 246 ARDVFY 251 (330)
T ss_pred HHHHHh
Confidence 888753
No 87
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=9e-29 Score=220.71 Aligned_cols=174 Identities=17% Similarity=0.210 Sum_probs=128.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
||+++|++++|++.. +|+++||++++|++++|+|+||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (255)
T PRK11231 2 TLRTENLTVGYGTKR----ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQL 74 (255)
T ss_pred EEEEEeEEEEECCEE----EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHHH
Confidence 699999999998755 9999999999999999999999999999999999999 9999 88999765321 12
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCcee---ec---c------------CC-ccCCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVY---AP---S------------FD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~---~~---~------------~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
...+.+.+|...+ +++.+|+.++.... .. . +. ....++.+.+|||||+|||+|
T Consensus 75 ~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 154 (255)
T PRK11231 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLA 154 (255)
T ss_pred hhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHh
Confidence 2334455544322 57888887642100 00 0 00 012367889999999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+++.|.++.+ .+|++|||++++.. +++ |+++..|+++++..
T Consensus 155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 155 QDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 8999999999 34555555432 24799999999876 443 77777888777643
No 88
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.95 E-value=7.3e-29 Score=219.43 Aligned_cols=173 Identities=19% Similarity=0.248 Sum_probs=128.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---H-h
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---A-H 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~-~ 151 (287)
+|+++|+++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. . .
T Consensus 2 ~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~ 74 (242)
T TIGR03411 2 ILYLEGLSVSFDGFK----ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEHQI 74 (242)
T ss_pred eEEEEeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHHHH
Confidence 689999999998654 8999999999999999999999999999999999999 9999 8999976421 1 1
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCceee---------c-------------cCC-ccCCCCCCCceeccccceEEE
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGSVYA---------P-------------SFD-HGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~---------~-------------~~~-~~~~~~~~~~LSgGekqRv~I 205 (287)
.+.++.+.++...+ +++.+|+.+...... . .+. ....++.+..|||||+|||+|
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~l 154 (242)
T TIGR03411 75 ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEI 154 (242)
T ss_pred HhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 23345555554332 588888876421100 0 000 012356789999999999988
Q ss_pred -----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+++.|.++.. ..|++|||++++.. |++ |++++.|+++++.
T Consensus 155 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 155 GMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 8999999999 45555655543 35799999999875 443 7777788777653
No 89
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.95 E-value=2.7e-29 Score=220.61 Aligned_cols=173 Identities=18% Similarity=0.234 Sum_probs=127.4
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----Hhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----AHA 152 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~~~ 152 (287)
|+++||++.|++.. +|+|+||++.+|+++||+|+||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (230)
T TIGR03410 1 LEVSNLNVYYGQSH----ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERA 73 (230)
T ss_pred CEEEeEEEEeCCeE----EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHHH
Confidence 46899999998655 9999999999999999999999999999999999999 9999 8899865421 112
Q ss_pred hCCCCCCCChhH---HHHHHHHHhcCCceeec-----------cCC--ccCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 153 RRGAPWTFNPLL---LLNCLKNLRNQGSVYAP-----------SFD--HGVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~-----------~~~--~~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
...+.+.++... .+++.+|+.+....... .+. ....++.+.+|||||+||++| .+|+++
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~il 153 (230)
T TIGR03410 74 RAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLL 153 (230)
T ss_pred HhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 234445554432 25788888653211100 010 113467889999999999988 899999
Q ss_pred eEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 212 FLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
|||| .+++.|.++.+ ..|++|||++++.. +++ |++++.|+++++..
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~~ 221 (230)
T TIGR03410 154 LLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDE 221 (230)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcCh
Confidence 9999 45556665543 24699999999875 444 77777888777633
No 90
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.7e-29 Score=225.61 Aligned_cols=174 Identities=17% Similarity=0.256 Sum_probs=128.9
Q ss_pred EEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----H
Q 023106 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~ 150 (287)
||+++||++.|+ +.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 1 ml~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 73 (274)
T PRK13644 1 MIRLENVSYSYPDGTP----ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKLQ 73 (274)
T ss_pred CEEEEEEEEEcCCCCc----eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccHH
Confidence 488999999995 333 8999999999999999999999999999999999999 9999 8999976521 1
Q ss_pred hhhCCCCCCCChhH----HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 151 HARRGAPWTFNPLL----LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 ~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
.....+.+.+|... ..++.+|+.+...... . .+. ....++.+..||+||+|||.| .
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 153 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM 153 (274)
T ss_pred HHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 22334555555432 1588899876432110 0 000 012367889999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+|+++|||| .+++.+.++.+ .+|++|||++.+.. |++ |++++.|+++++..
T Consensus 154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999 45566665543 24699999999854 443 77777888777643
No 91
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.6e-29 Score=221.63 Aligned_cols=175 Identities=15% Similarity=0.150 Sum_probs=128.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~ 148 (287)
+.+|+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ | ++| +.++|.++.
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~ 74 (253)
T PRK14267 2 KFAIETVNLRVYYGSNH----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE---LNEEARVEGEVRLFGRNIY 74 (253)
T ss_pred cceEEEEeEEEEeCCee----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---cccCCCCceEEEECCEEcc
Confidence 34799999999998755 9999999999999999999999999999999999998 7 489 899997653
Q ss_pred -----HHhhhCCCCCCCChhHH---HHHHHHHhcCCceee----------------ccCC-----ccCCCCCCCceeccc
Q 023106 149 -----EAHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA----------------PSFD-----HGVGDPVEDDILVGL 199 (287)
Q Consensus 149 -----~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~----------------~~~~-----~~~~~~~~~~LSgGe 199 (287)
....+..+.+.+|...+ .++.+|+.+...... ..+. ....++.+..|||||
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 154 (253)
T PRK14267 75 SPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQ 154 (253)
T ss_pred ccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHH
Confidence 11223345555554332 578888865321100 0010 012356788999999
Q ss_pred cceEEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 200 QHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 200 kqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
+||++| .+|+++|||| .+++.|.++.. .+|++|||++++.. |++ |++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 999988 8999999999 44555555543 35799999998765 443 77778888777
Q ss_pred HH
Q 023106 255 VA 256 (287)
Q Consensus 255 ~~ 256 (287)
+.
T Consensus 235 ~~ 236 (253)
T PRK14267 235 VF 236 (253)
T ss_pred HH
Confidence 64
No 92
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.5e-29 Score=226.09 Aligned_cols=176 Identities=16% Similarity=0.188 Sum_probs=130.6
Q ss_pred ccEEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---
Q 023106 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--- 149 (287)
|.+|+++||++.|+ ... +|+|+||+|.+|+++||+|+||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 ~~~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 1 MHLIETRDLCYSYSGSKE----ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENI 73 (277)
T ss_pred CceEEEEEEEEEeCCCCc----eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCH
Confidence 56799999999995 333 8999999999999999999999999999999999999 9999 8999975421
Q ss_pred HhhhCCCCCCCChhH----HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 150 AHARRGAPWTFNPLL----LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
......+++.++... ..++.+|+.+...... . .+. ....++.+..|||||+||+.|
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~ 153 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIA 153 (277)
T ss_pred HHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 112233445554421 2588888865321100 0 000 112367889999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.+.++.. .+|++|||++++.. |++ |++++.|+++++..
T Consensus 154 ~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 8999999999 45555555533 24699999999875 544 78888898888753
No 93
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=3.4e-29 Score=221.37 Aligned_cols=173 Identities=18% Similarity=0.265 Sum_probs=127.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----H
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~ 150 (287)
||+++|+++.|++.. +|+|+||++.+|+++||+|+||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 1 ~l~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 1 MIEFKNVSKHFGPTQ----VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred CEEEEeEEEEECCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHH
Confidence 488999999998655 8999999999999999999999999999999999999 9999 8999976431 1
Q ss_pred hhhCCCCCCCChhH---HHHHHHHHhcCCc-eeec--------------cCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 151 HARRGAPWTFNPLL---LLNCLKNLRNQGS-VYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 ~~~~~~~~~~~~~~---~~tv~e~l~~~~~-~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+..+.+.+|... ..++.+|+.+... .... .+. ....++.+..||+||+||++| .
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~ 153 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAV 153 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhc
Confidence 22334555555432 2588888865421 0000 000 012357788999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+|+++|||| .+++.|.++.+ ..|++|||++++.. |++ |++++.|++.++.
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 154 KPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 999999999 44555555432 24799999999865 443 7777788777654
No 94
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.94 E-value=4.4e-29 Score=223.14 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=122.5
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
++|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++... +.
T Consensus 11 ~~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~--~~ 81 (257)
T PRK11247 11 TPLLLNAVSKRYGERT----VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEA--RE 81 (257)
T ss_pred CcEEEEEEEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHh--hC
Confidence 4699999999998765 9999999999999999999999999999999999999 9999 88888765332 22
Q ss_pred CCCCCCChhH---HHHHHHHHhcCCcee-e-------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec--
Q 023106 155 GAPWTFNPLL---LLNCLKNLRNQGSVY-A-------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-- 215 (287)
Q Consensus 155 ~~~~~~~~~~---~~tv~e~l~~~~~~~-~-------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-- 215 (287)
.+.+.+|... ..++.+|+.+..... . ..+. ....++.+.+|||||||||+| .+|+++||||
T Consensus 82 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt 161 (257)
T PRK11247 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL 161 (257)
T ss_pred ceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3444444432 258888887642110 0 0011 112357789999999999988 8999999999
Q ss_pred ---------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCC
Q 023106 216 ---------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 216 ---------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~ 251 (287)
.+.+.|.++.. .+|++|||++++.. +++ |+++..|+
T Consensus 162 ~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~ 217 (257)
T PRK11247 162 GALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLT 217 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecc
Confidence 34555555422 24799999998765 443 55555443
No 95
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.8e-29 Score=228.40 Aligned_cols=178 Identities=15% Similarity=0.198 Sum_probs=130.7
Q ss_pred cEEEecCchhhhhhhh-hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 76 PVVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~-~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
++|+++||++.|++.. ....+|+|+||+|++|+++||+|+||||||||+++|+|+++ |++| |.++|.++..
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCEEccccccc
Confidence 5799999999997421 11238999999999999999999999999999999999999 9999 8899865321
Q ss_pred ---------------HhhhCCCCCCCChhH--H--HHHHHHHhcCCcee-ec-------------cCC--ccCCCCCCCc
Q 023106 150 ---------------AHARRGAPWTFNPLL--L--LNCLKNLRNQGSVY-AP-------------SFD--HGVGDPVEDD 194 (287)
Q Consensus 150 ---------------~~~~~~~~~~~~~~~--~--~tv~e~l~~~~~~~-~~-------------~~~--~~~~~~~~~~ 194 (287)
...+..+++++|... + .++.+|+.++.... .. .+. ....++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 176 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG 176 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCccc
Confidence 122334556666431 1 58899987652110 00 011 1124678899
Q ss_pred eeccccceEEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhc
Q 023106 195 ILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 195 LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~ 248 (287)
|||||+|||+| .+|++||||| .+++.|.++.. .+|++|||++++.. |++ |++++
T Consensus 177 LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~ 256 (320)
T PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK 256 (320)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999998 8999999999 44555555432 24699999998765 544 88888
Q ss_pred CCCcHHHH
Q 023106 249 TGKPPDVA 256 (287)
Q Consensus 249 ~G~~~~~~ 256 (287)
.|+++++.
T Consensus 257 ~g~~~~~~ 264 (320)
T PRK13631 257 TGTPYEIF 264 (320)
T ss_pred eCCHHHHh
Confidence 89888764
No 96
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=7.1e-29 Score=224.32 Aligned_cols=177 Identities=18% Similarity=0.190 Sum_probs=132.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
+|+++||++.|++.. ...+|+|+||+|++|+++||+|+||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 4 ~l~~~~l~~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13650 4 IIEVKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEENVWDI 79 (279)
T ss_pred eEEEEeEEEEcCCCC-cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHHH
Confidence 699999999996421 1238999999999999999999999999999999999999 9999 9999976532 122
Q ss_pred hCCCCCCCChhH--H--HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 153 RRGAPWTFNPLL--L--LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 153 ~~~~~~~~~~~~--~--~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
+..+++.+|... + .++.+|+.++..... . .+. ....++.+.+|||||+||++| .+|
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p 159 (279)
T PRK13650 80 RHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRP 159 (279)
T ss_pred HhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 334667777542 1 589999987532110 0 000 112367889999999999998 999
Q ss_pred CEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
++||||| .+++.+.++.+ .+|++|||++.+.. |++ |+++..|+++++..
T Consensus 160 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 160 KIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999 45556665543 24699999999853 443 77777888877653
No 97
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.8e-29 Score=219.71 Aligned_cols=172 Identities=18% Similarity=0.240 Sum_probs=125.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH-------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK------- 148 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~------- 148 (287)
+|+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++| +.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (242)
T PRK11124 2 SIQLNGINCFYGAHQ----ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred EEEEEeeEEEECCee----eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccch
Confidence 689999999998755 9999999999999999999999999999999999999 9999 899997541
Q ss_pred --HHhhhCCCCCCCChhHH---HHHHHHHhcCC-cee-e-------------ccCC-ccCCCCCCCceeccccceEEE--
Q 023106 149 --EAHARRGAPWTFNPLLL---LNCLKNLRNQG-SVY-A-------------PSFD-HGVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 149 --~~~~~~~~~~~~~~~~~---~tv~e~l~~~~-~~~-~-------------~~~~-~~~~~~~~~~LSgGekqRv~I-- 205 (287)
....+.++.+.+|...+ +++.+|+.+.. ... . ..+. ....++.+..|||||+||++|
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 154 (242)
T PRK11124 75 KAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIAR 154 (242)
T ss_pred hhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 11223345555554432 57888875311 000 0 0010 112367789999999999988
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
.+|+++|||| .+++.+.++.+ .++++|||.+++.. |++ |++++.|+++++
T Consensus 155 al~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 8999999999 34455554432 24699999999865 443 677777776654
No 98
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.94 E-value=2.3e-29 Score=234.52 Aligned_cols=166 Identities=19% Similarity=0.289 Sum_probs=125.5
Q ss_pred hhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----H--hhhCCC
Q 023106 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----A--HARRGA 156 (287)
Q Consensus 85 ~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~--~~~~~~ 156 (287)
|.|+++. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++.. . .+++.+
T Consensus 1 ~~~~~~~----~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i 73 (363)
T TIGR01186 1 KKTGGKK----GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKI 73 (363)
T ss_pred CccCCce----eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcE
Confidence 4576665 8999999999999999999999999999999999999 9999 9999976432 1 114456
Q ss_pred CCCCChhHH---HHHHHHHhcCCceeec-c-------------CC-ccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 157 PWTFNPLLL---LNCLKNLRNQGSVYAP-S-------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 157 ~~~~~~~~~---~tv~e~l~~~~~~~~~-~-------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
.+++|...+ +|+.+|+.++...... . +. ....++++.+|||||||||+| .+|++|||
T Consensus 74 ~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 74 GMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred EEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 667766543 6899999875322110 0 00 113468899999999999988 99999999
Q ss_pred ec-----------chHHHHHhcc---C-CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 214 DG-----------GVWKDVSSMF---D-EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 214 DE-----------~~~~~l~~~~---~-~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
|| .+.+.+.++. . .+||+|||++++.. |++ |+++..|+++++..
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 99 4455555443 2 35799999999876 444 78888898888753
No 99
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.3e-28 Score=221.02 Aligned_cols=174 Identities=18% Similarity=0.189 Sum_probs=129.5
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hh
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AH 151 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~ 151 (287)
++|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 10 ~~l~i~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 82 (265)
T PRK10575 10 TTFALRNVSFRVPGRT----LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSKA 82 (265)
T ss_pred ceEEEeeEEEEECCEE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHHH
Confidence 4799999999998655 9999999999999999999999999999999999999 9999 8999976532 11
Q ss_pred hhCCCCCCCChhH---HHHHHHHHhcCCceee-----c-------------cCC-ccCCCCCCCceeccccceEEE----
Q 023106 152 ARRGAPWTFNPLL---LLNCLKNLRNQGSVYA-----P-------------SFD-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 152 ~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-----~-------------~~~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
.+..+.+.+|... .+++.+|+.+...... . .+. ....++.+.+|||||+|||+|
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 162 (265)
T PRK10575 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLV 162 (265)
T ss_pred HhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 2233455555422 2588888876421100 0 000 012367889999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 8999999999 44556665532 24699999998875 443 7877788877664
No 100
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.5e-29 Score=226.03 Aligned_cols=175 Identities=19% Similarity=0.250 Sum_probs=131.4
Q ss_pred cEEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH-----
Q 023106 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK----- 148 (287)
Q Consensus 76 ~~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~----- 148 (287)
++|+++||++.|+ +.. +|+++||+|.+|+++||+|+||||||||+++|+|+++ |++| +.++|.++.
T Consensus 4 ~~l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~~ 76 (283)
T PRK13636 4 YILKVEELNYNYSDGTH----ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKG 76 (283)
T ss_pred ceEEEEeEEEEeCCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcch
Confidence 3799999999996 344 8999999999999999999999999999999999999 9999 999997652
Q ss_pred HHhhhCCCCCCCChh--H--HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE----
Q 023106 149 EAHARRGAPWTFNPL--L--LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 149 ~~~~~~~~~~~~~~~--~--~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
....+..+++.+|.. . ..++.+|+.++..... + .+. ....++.+..|||||+||++|
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL 156 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 156 (283)
T ss_pred HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 112233455555543 1 2588999876321110 0 000 113467899999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|.++.. .++++|||++++.. |++ |++++.|+++++..
T Consensus 157 ~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 8999999999 34555655543 24699999999875 544 78888898887654
No 101
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.94 E-value=2e-29 Score=218.87 Aligned_cols=156 Identities=15% Similarity=0.236 Sum_probs=115.7
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~~ 155 (287)
|+++|+++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++... .....
T Consensus 1 i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~ 73 (213)
T cd03301 1 VELENVTKRFGNVT----ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRD 73 (213)
T ss_pred CEEEeeEEEECCee----eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccce
Confidence 46899999998765 8999999999999999999999999999999999999 9999 88998765321 11223
Q ss_pred CCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 156 APWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 156 ~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
+.+.+|...+ .++.+|+.+...... ..+. ....++.+.+|||||+||++| .+|+++|
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll 153 (213)
T cd03301 74 IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFL 153 (213)
T ss_pred EEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4455554332 578888865421110 0000 012367789999999999988 8999999
Q ss_pred Eec-----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 213 LDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
||| .+++.|.++.+ .+|++|||++++..
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~ 196 (213)
T cd03301 154 MDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMT 196 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 999 45566665532 24799999998764
No 102
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.1e-28 Score=221.84 Aligned_cols=179 Identities=13% Similarity=0.178 Sum_probs=128.1
Q ss_pred CccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc-c-CCCcc-eeeCCCCHHH-
Q 023106 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-I-WPQKA-SSFDSQDPKE- 149 (287)
Q Consensus 74 ~~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~-~-~p~~G-i~~~g~~~~~- 149 (287)
..++|+++|+++.|++.. +|+++||+|.+|+++||+|+||||||||+++|+|++.. . .|++| +.++|.++..
T Consensus 18 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 93 (268)
T PRK14248 18 KEHILEVKDLSIYYGEKR----AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDS 93 (268)
T ss_pred CCceEEEEEEEEEeCCce----eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccc
Confidence 445899999999998755 99999999999999999999999999999999998520 0 15789 8899876532
Q ss_pred ----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee---------------ccCCc-----cCCCCCCCceeccccceE
Q 023106 150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---------------PSFDH-----GVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---------------~~~~~-----~~~~~~~~~LSgGekqRv 203 (287)
...+.++.+.+|...+ .++.+|+.+...... ..+.. ...++.+.+|||||+||+
T Consensus 94 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 94 NINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred cccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH
Confidence 1223345555554322 477888765321100 00000 123567899999999999
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+| .+|+++|||| .+++.|.++.. .+|++|||++++.. |++ |++++.|+++++.
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 88 8999999999 45555555533 34699999998865 444 7777788877663
No 103
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.94 E-value=3.7e-29 Score=228.58 Aligned_cols=167 Identities=21% Similarity=0.342 Sum_probs=122.4
Q ss_pred hhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--HhhhCCCCCCCC
Q 023106 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHARRGAPWTFN 161 (287)
Q Consensus 85 ~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~~~~~~~~~ 161 (287)
|.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...+..+++.+|
T Consensus 1 k~y~~~~----~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~q 73 (302)
T TIGR01188 1 KVYGDFK----AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGIVPQ 73 (302)
T ss_pred CeeCCee----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEEecC
Confidence 3566554 8999999999999999999999999999999999999 9999 8999976522 111223444444
Q ss_pred hhH---HHHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec---
Q 023106 162 PLL---LLNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG--- 215 (287)
Q Consensus 162 ~~~---~~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE--- 215 (287)
... .+++.+|+.+....... .+. ....++.+.+|||||||||+| .+|++|||||
T Consensus 74 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 74 YASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 432 26888888764221100 011 112367889999999999988 8999999999
Q ss_pred --------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 216 --------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 216 --------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
.+++.|.++.+ .++++|||++++.. |++ |+++..|+++++...
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 45666666543 24699999999876 443 788888888887543
No 104
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.94 E-value=2.5e-29 Score=218.97 Aligned_cols=161 Identities=20% Similarity=0.299 Sum_probs=116.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--Hhhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~ 153 (287)
||+++||++.|++......+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCHHHHH
Confidence 47899999999865111128999999999999999999999999999999999999 9999 8899876532 1112
Q ss_pred CCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 154 RGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 154 ~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
..+.+.+|...+ .++.+|+.+...... ..+. ....++.+.+|||||+||++| .+|++
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 334455554322 578888765321110 0000 012356888999999999988 89999
Q ss_pred EeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
||||| .+++.|.++.+ .+|++|||++++..
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 201 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVER 201 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999 45555555532 24699999998764
No 105
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.5e-29 Score=221.64 Aligned_cols=175 Identities=15% Similarity=0.188 Sum_probs=128.4
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~ 148 (287)
+++|+++|+++.|++.. +|+|+||+|.+|+++||+|+||||||||+++|+|+++ | ++| +.++|.++.
T Consensus 10 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQ----ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMND---LIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred ceeEEEeeeEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---cccCCCcceEEEECCEEcc
Confidence 56899999999998655 8999999999999999999999999999999999987 5 689 889987642
Q ss_pred H-----HhhhCCCCCCCChhHH--HHHHHHHhcCCcee-e-------------ccCC-----ccCCCCCCCceeccccce
Q 023106 149 E-----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVY-A-------------PSFD-----HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 149 ~-----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~-~-------------~~~~-----~~~~~~~~~~LSgGekqR 202 (287)
. ...+.++.+.+|...+ .++.+|+.+..... . ..+. ....++.+..|||||+||
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 83 EPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQR 162 (258)
T ss_pred cccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHH
Confidence 1 1223345555544321 57888887532110 0 0010 012356788999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|+| .+|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 998 8999999999 45555555533 24699999999875 443 7777788877763
No 106
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.94 E-value=4.1e-29 Score=220.42 Aligned_cols=174 Identities=22% Similarity=0.257 Sum_probs=126.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH--hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--HAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--~~~ 153 (287)
+|+++|+++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++... ...
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 1 ALEVAGLSFAYGARR----ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred CEEEEeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhhh
Confidence 478999999998655 8999999999999999999999999999999999999 9999 88998764321 111
Q ss_pred CCCCCCCChhH---HHHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 154 RGAPWTFNPLL---LLNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 154 ~~~~~~~~~~~---~~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
..+.+.+|... ..++.+|+.+...... ..+. ....++.+..|||||+||++| .+|++
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l 153 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL 153 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 23444444322 2577888765322110 0010 012356788999999999988 89999
Q ss_pred EeEec-----------chHHHHHhccC----CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+|||| .+++.|.++.+ ..|++|||++++.. |++ |++++.|+++++..
T Consensus 154 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 154 LLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 99999 45566665542 24699999999864 333 67667777766644
No 107
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.94 E-value=1.2e-28 Score=235.67 Aligned_cols=179 Identities=19% Similarity=0.299 Sum_probs=133.8
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC----cc-eeeCCCCHHH-
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ----KA-SSFDSQDPKE- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~----~G-i~~~g~~~~~- 149 (287)
++|+++||++.|........+++||||+|.+||++||+|.|||||||+++.|.|+++ +. +| |.++|.++..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~---~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP---EGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCcccceEEEECCcchhcC
Confidence 379999999999765434569999999999999999999999999999999999998 55 68 9999986422
Q ss_pred ----HhhhC--CCCCCCChhH-----HHHHHHHHhcCCceee-----------------ccCCcc-CCCCCCCceecccc
Q 023106 150 ----AHARR--GAPWTFNPLL-----LLNCLKNLRNQGSVYA-----------------PSFDHG-VGDPVEDDILVGLQ 200 (287)
Q Consensus 150 ----~~~~~--~~~~~~~~~~-----~~tv~e~l~~~~~~~~-----------------~~~~~~-~~~~~~~~LSgGek 200 (287)
.+..+ .+.+.||.+. .+++-+.+......+. -..... ..+++|++||||||
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~r 160 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMR 160 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHH
Confidence 12222 3666777642 2444444433111111 011111 11579999999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~ 253 (287)
|||.| .+|++||+|| ++++.|+++.++ .+|||||+..+.+ |++ |++++.|+++
T Consensus 161 QRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~ 240 (539)
T COG1123 161 QRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTE 240 (539)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHH
Confidence 99988 9999999999 567777766643 4799999999998 665 8999999999
Q ss_pred HHHH
Q 023106 254 DVAK 257 (287)
Q Consensus 254 ~~~~ 257 (287)
+++.
T Consensus 241 ~i~~ 244 (539)
T COG1123 241 EILS 244 (539)
T ss_pred HHHh
Confidence 9865
No 108
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.94 E-value=2.4e-29 Score=217.66 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=115.3
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~~ 155 (287)
|+++|+++.|++.. +|+++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..+..
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGKKR----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALRR 73 (208)
T ss_pred CEEEEEEEEECCeE----eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHhh
Confidence 46899999997655 9999999999999999999999999999999999999 9999 99999865321 11223
Q ss_pred CCCCCChhH---HHHHHHHHhcCCceee----------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-
Q 023106 156 APWTFNPLL---LLNCLKNLRNQGSVYA----------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG- 215 (287)
Q Consensus 156 ~~~~~~~~~---~~tv~e~l~~~~~~~~----------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE- 215 (287)
+.+.+|... ..++.+|+.+...... ..+. ....++.+.+|||||+|||+| .+|+++||||
T Consensus 74 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 153 (208)
T cd03268 74 IGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEP 153 (208)
T ss_pred EEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 444444432 2688888865421110 0010 012356788999999999988 8999999999
Q ss_pred ----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 216 ----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+++.+.++.. ..|++|||++++..
T Consensus 154 t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 154 TNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQK 191 (208)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 44555555432 24699999998864
No 109
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.8e-29 Score=235.71 Aligned_cols=172 Identities=19% Similarity=0.295 Sum_probs=124.4
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----H-
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----A- 150 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~- 150 (287)
++++++.+.|+... +|+++||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 29 ~~~~~~~~~~~~~~----~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~---p~sG~I~i~G~~i~~~~~~~l~ 101 (400)
T PRK10070 29 LSKEQILEKTGLSL----GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE---PTRGQVLIDGVDIAKISDAELR 101 (400)
T ss_pred ccHHHHHhhcCCeE----EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCEEEECCEECCcCCHHHHH
Confidence 44444555554333 7999999999999999999999999999999999999 9999 8999976421 1
Q ss_pred -hhhCCCCCCCChhHH---HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 151 -HARRGAPWTFNPLLL---LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+..+.+.+|...+ +++.+|+.++..... . .+. ....++++.+|||||||||+| .
T Consensus 102 ~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~ 181 (400)
T PRK10070 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAI 181 (400)
T ss_pred HHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhc
Confidence 112345666665432 688999876432110 0 010 113467899999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+|++||||| .+++.|.++.. .+|++|||++++.. |++ |+++..|+++++.
T Consensus 182 ~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 182 NPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 999999999 45555655432 24799999999876 444 7777788877764
No 110
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.94 E-value=1.7e-28 Score=213.17 Aligned_cols=157 Identities=18% Similarity=0.242 Sum_probs=116.2
Q ss_pred EEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
||+++|+++.|+ +.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~~----il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVA----ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred CEEEEeeeEEeCCCce----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHH
Confidence 488999999994 444 8999999999999999999999999999999999999 9999 8899876421
Q ss_pred -HhhhCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCCc-cCCCCCCCceeccccceEEE-----
Q 023106 150 -AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFDH-GVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~~-~~~~~~~~~LSgGekqRv~I----- 205 (287)
...+..+.+.+|...+ .++.+|+.+...... ..+.- ...++.+.+|||||+|||+|
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 153 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIV 153 (214)
T ss_pred HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 1123345555555432 578888775421100 00110 12356788999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+|+++|||| .+++.|+++.+ .++++|||++++..
T Consensus 154 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 202 (214)
T TIGR02673 154 NSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDR 202 (214)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 8999999999 45555655432 24699999998864
No 111
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.5e-28 Score=218.37 Aligned_cols=174 Identities=14% Similarity=0.162 Sum_probs=126.9
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~ 148 (287)
|++|+++|+++.|+++. +|+++||+|.+|++++|+||||||||||+++|+|+++ | ++| +.++|.++.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~ 73 (249)
T PRK14253 1 MNKFNIENLDLFYGENQ----ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND---LIEGVKITGKLTMDGEDIY 73 (249)
T ss_pred CCeEEEeccEEEECCee----eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEcc
Confidence 45799999999998655 8999999999999999999999999999999999987 6 488 889987542
Q ss_pred H----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee-c--------------cCC-----ccCCCCCCCceeccccce
Q 023106 149 E----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-P--------------SFD-----HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 149 ~----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~--------------~~~-----~~~~~~~~~~LSgGekqR 202 (287)
. ...+.++.+.+|...+ .++.+|+.+...... . .+. ....++.+.+|||||+||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 74 GNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred cccchHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHH
Confidence 1 1223345555554322 578888875421110 0 000 012346788999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
|+| .+|+++|||| .+++.|.++.. .+|++||+++++.. |++ |++++.|+++++
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 998 8999999999 34455555433 35799999999876 443 777778877665
No 112
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.1e-28 Score=219.66 Aligned_cols=175 Identities=15% Similarity=0.224 Sum_probs=131.0
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hh
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AH 151 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~ 151 (287)
.+|+++||+++|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 6 ~~l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 78 (265)
T PRK10253 6 ARLRGEQLTLGYGKYT----VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASKE 78 (265)
T ss_pred cEEEEEEEEEEECCEE----EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHHH
Confidence 4799999999998755 9999999999999999999999999999999999999 9999 8899986532 11
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCceee------c------------cCC-ccCCCCCCCceeccccceEEE----
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGSVYA------P------------SFD-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~------~------------~~~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
....+.+.++...+ .++.+|+.+...... . .+. ....++.+..|||||+||++|
T Consensus 79 ~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral 158 (265)
T PRK10253 79 VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVL 158 (265)
T ss_pred HhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHH
Confidence 22335555554332 578888875421000 0 000 012367899999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|++.++..
T Consensus 159 ~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 159 AQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 8999999999 45566666543 24799999998876 443 77778888877643
No 113
>PRK10908 cell division protein FtsE; Provisional
Probab=99.94 E-value=1.9e-28 Score=214.22 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=117.0
Q ss_pred EEEecCchhhh-hhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y-~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
||+++|+++.| ++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQ----ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred CEEEEeeEEEecCCCe----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhH
Confidence 48899999999 5444 8999999999999999999999999999999999999 9999 8899976532
Q ss_pred -HhhhCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----
Q 023106 150 -AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
...+..+.+.+|...+ .++.+|+.+...... ..+. ....++.+.+|||||+||++|
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVV 153 (222)
T ss_pred HHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHH
Confidence 1123345555554332 588888876421110 0000 012356889999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+|+++|||| .+++.|.++.+ ..+++|||++++..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISR 202 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 8999999999 35555555533 24699999999875
No 114
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.94 E-value=7.1e-29 Score=217.30 Aligned_cols=161 Identities=17% Similarity=0.269 Sum_probs=116.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------ 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------ 149 (287)
+|+++||++.|++......+|+++||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccchhhH
Confidence 47899999999764100128999999999999999999999999999999999999 9999 8999976532
Q ss_pred HhhhCCCCCCCChhH-----HHHHHHHHhcCCcee---------e-------ccCCc--cCCCCCCCceeccccceEEE-
Q 023106 150 AHARRGAPWTFNPLL-----LLNCLKNLRNQGSVY---------A-------PSFDH--GVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~---------~-------~~~~~--~~~~~~~~~LSgGekqRv~I- 205 (287)
...+..+.+.+|... .+++.+|+.+..... . ..+.- ...++.+..|||||+|||+|
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 122334555555431 157777775421100 0 01111 12356789999999999988
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.+|++||||| .+++.|.++.. .+|++|||++.+..
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 211 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAK 211 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 8999999999 45555655542 24699999998864
No 115
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-28 Score=219.94 Aligned_cols=172 Identities=21% Similarity=0.316 Sum_probs=128.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----Hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----AH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~~ 151 (287)
+|+++|+++.|++.. +|+++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 5 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 77 (255)
T PRK11300 5 LLSVSGLMMRFGGLL----AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPGHQI 77 (255)
T ss_pred eEEEeeEEEEECCEE----EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCHHHH
Confidence 699999999998655 9999999999999999999999999999999999999 9999 8899975421 12
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCce----------ee-c------------------cCC-ccCCCCCCCceecc
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGSV----------YA-P------------------SFD-HGVGDPVEDDILVG 198 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~----------~~-~------------------~~~-~~~~~~~~~~LSgG 198 (287)
.+.++.+.++...+ +++.+|+.++... .. + .+. ....++.+.+||||
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 78 ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYG 157 (255)
T ss_pred HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHH
Confidence 23344444554332 6888888764210 00 0 000 01235788899999
Q ss_pred ccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCC
Q 023106 199 LQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 199 ekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~ 251 (287)
|+||++| .+|++||||| .+++.|.++.+ .+|++|||++++.. +++ |+++..|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 9999988 8999999999 45555655532 24699999999876 443 77777887
Q ss_pred cHHH
Q 023106 252 PPDV 255 (287)
Q Consensus 252 ~~~~ 255 (287)
++++
T Consensus 238 ~~~~ 241 (255)
T PRK11300 238 PEEI 241 (255)
T ss_pred HHHH
Confidence 7765
No 116
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.94 E-value=9.4e-29 Score=220.84 Aligned_cols=173 Identities=15% Similarity=0.206 Sum_probs=127.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------ 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------ 149 (287)
+|+++||++.|++.. +|+++||+|.+|+++||+|+||||||||+++|+|+++ |++| +.++|.++..
T Consensus 5 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 5 KLNVIDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDKDG 77 (257)
T ss_pred cEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEccccccccc
Confidence 599999999998755 8999999999999999999999999999999999999 9999 8899975421
Q ss_pred ----------HhhhCCCCCCCChhHH---HHHHHHHhcCCc----ee-----------eccCCc--cCCCCCCCceeccc
Q 023106 150 ----------AHARRGAPWTFNPLLL---LNCLKNLRNQGS----VY-----------APSFDH--GVGDPVEDDILVGL 199 (287)
Q Consensus 150 ----------~~~~~~~~~~~~~~~~---~tv~e~l~~~~~----~~-----------~~~~~~--~~~~~~~~~LSgGe 199 (287)
...+..+.+.+|...+ .++.+|+.++.. .. ...+.- ...++.+.+|||||
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~ 157 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQ 157 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHH
Confidence 1223345555554332 578888764210 00 001111 11256789999999
Q ss_pred cceEEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcH
Q 023106 200 QHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 200 kqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~ 253 (287)
+||++| .+|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (257)
T PRK10619 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPE 237 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999988 8999999999 44555555533 24799999999875 444 7777788877
Q ss_pred HHH
Q 023106 254 DVA 256 (287)
Q Consensus 254 ~~~ 256 (287)
++.
T Consensus 238 ~~~ 240 (257)
T PRK10619 238 QLF 240 (257)
T ss_pred Hhh
Confidence 664
No 117
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.1e-28 Score=219.41 Aligned_cols=175 Identities=16% Similarity=0.242 Sum_probs=127.1
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~ 148 (287)
|++|+++||++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ | ++| +.++|.++.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~i~g~~~~ 73 (250)
T PRK14262 1 EPIIEIENFSAYYGEKK----AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND---HIPGFRVEGKIYFKGQDIY 73 (250)
T ss_pred CceEEEEeeEEEeCCce----eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCCCcceEEEECCEEcc
Confidence 45799999999998655 8999999999999999999999999999999999986 4 789 889997643
Q ss_pred H-----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee-c--------------cCCc-----cCCCCCCCceeccccc
Q 023106 149 E-----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-P--------------SFDH-----GVGDPVEDDILVGLQH 201 (287)
Q Consensus 149 ~-----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~--------------~~~~-----~~~~~~~~~LSgGekq 201 (287)
. ...+..+.+.+|...+ .++.+|+.+...... . .+.. ...++.+..|||||+|
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 74 DPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQ 153 (250)
T ss_pred cchhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHH
Confidence 1 1122334444443221 577888865321100 0 0000 1135678899999999
Q ss_pred eEEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 202 KVVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 202 Rv~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|++| .+|+++|||| .+++.|.++.. .++++|||++.+.. |++ |+++..|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9988 8999999999 44555555433 24699999998765 443 7777888877764
No 118
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=8.3e-29 Score=223.88 Aligned_cols=176 Identities=20% Similarity=0.242 Sum_probs=131.8
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hh
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AH 151 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~ 151 (287)
++|+++||++.|++.. ..+|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 4 EIIRVEHISFRYPDAA--TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEETVWD 78 (279)
T ss_pred ceEEEEEEEEEeCCCC--ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence 3799999999996421 128999999999999999999999999999999999999 9999 9999976532 12
Q ss_pred hhCCCCCCCChhH--H--HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 152 ARRGAPWTFNPLL--L--LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 152 ~~~~~~~~~~~~~--~--~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.+..+.+.+|... + .++.+|+.++..... . .+. ....++.+..|||||+|||+| .+
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQ 158 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 2334666666542 1 589999976422110 0 000 113467889999999999988 99
Q ss_pred CCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
|++||||| .+++.|.++.+ .++++|||++++.. |++ |++++.|+++++.
T Consensus 159 p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 159 PDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHh
Confidence 99999999 45666666543 24699999999865 443 7777788877764
No 119
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=3e-28 Score=210.77 Aligned_cols=160 Identities=19% Similarity=0.254 Sum_probs=120.6
Q ss_pred ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHHHHHHHH
Q 023106 93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLLLNCLKN 171 (287)
Q Consensus 93 ~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~ 171 (287)
..++|+||||++++||.+||||+||||||||+|+|+|.++ |++| +.+.|.-.... . +..-|+.. +|..||
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~---Pt~G~v~v~G~v~~li--~--lg~Gf~pe--lTGreN 109 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK---PTSGKVKVTGKVAPLI--E--LGAGFDPE--LTGREN 109 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---CCCceEEEcceEehhh--h--cccCCCcc--cchHHH
Confidence 4569999999999999999999999999999999999999 9999 88888643211 1 22333333 677788
Q ss_pred HhcCCceeecc-------------CC--ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHH
Q 023106 172 LRNQGSVYAPS-------------FD--HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKD 220 (287)
Q Consensus 172 l~~~~~~~~~~-------------~~--~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~ 220 (287)
+.+...+.... |. ....+.++..+|-||+.|+++ .+|++||+|| ...+.
T Consensus 110 i~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~r 189 (249)
T COG1134 110 IYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLER 189 (249)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHH
Confidence 77643332111 11 123477899999999999887 9999999999 33444
Q ss_pred HHhcc---CCeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHHHHH
Q 023106 221 VSSMF---DEKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIE 261 (287)
Q Consensus 221 l~~~~---~~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~~~~ 261 (287)
+.++. ...|+||||++.+.+ |++ |++...|.+++++..|..
T Consensus 190 l~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 190 LNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred HHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHH
Confidence 54442 235799999999987 555 888889999999877644
No 120
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.7e-28 Score=219.44 Aligned_cols=178 Identities=11% Similarity=0.139 Sum_probs=127.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~--~~p~~G-i~~~g~~~~~-- 149 (287)
+++|+++|+++.|++.. +|+++||+|.+|+++||+|+||||||||+++|+|+++. .++++| +.++|.++..
T Consensus 10 ~~~l~i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 10 QEVYQINGMNLWYGQHH----ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred CceEEEeeEEEEECCee----eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 45799999999998655 89999999999999999999999999999999999860 011588 8899986531
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceeec---------------cCCc-----cCCCCCCCceeccccceEE
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYAP---------------SFDH-----GVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~---------------~~~~-----~~~~~~~~~LSgGekqRv~ 204 (287)
...+..+.+.+|...+ .++.+|+.+....... .+.- ...++.+.+|||||+||++
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLC 165 (259)
T ss_pred cCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 1222344555544221 4778887653211100 0000 1235678899999999998
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|+++|||| .+++.|.++.. ..|++|||++.+.. |++ |++++.|+++++.
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 8 8999999999 34555555433 24799999998876 443 7888888888764
No 121
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=2e-28 Score=212.19 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=114.6
Q ss_pred EecCchhhhhh--hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 79 EARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 79 ~~~~l~~~y~~--~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
+++|+++.|++ .. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 1 ~~~~l~~~~~~~~~~----il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (211)
T cd03225 1 ELKNLSFSYPDGARP----ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKEL 73 (211)
T ss_pred CceeEEEecCCCCee----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHHH
Confidence 36889999976 44 8999999999999999999999999999999999999 9999 8899875421 122
Q ss_pred hCCCCCCCChhH----HHHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 153 RRGAPWTFNPLL----LLNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 153 ~~~~~~~~~~~~----~~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
+..+.+.+|... ..++.+|+.+...... ..+. ....++.+..|||||+|||+| .+|
T Consensus 74 ~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 153 (211)
T cd03225 74 RRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP 153 (211)
T ss_pred HhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 234555555431 2578888865321100 0011 012357889999999999988 899
Q ss_pred CEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+++|||| .+++.|.++.+ .+|++|||++++..
T Consensus 154 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 154 DILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLE 199 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 9999999 45566665543 25799999998864
No 122
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.6e-28 Score=218.78 Aligned_cols=178 Identities=17% Similarity=0.196 Sum_probs=126.3
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~-- 149 (287)
-|+|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|++... .|++| +.++|+++..
T Consensus 4 ~~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQ----ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred CcEEEEeeeEEEECCee----eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 35799999999998654 899999999999999999999999999999999986310 14789 8899976531
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceee---------------ccCCc-----cCCCCCCCceeccccceEE
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---------------PSFDH-----GVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---------------~~~~~-----~~~~~~~~~LSgGekqRv~ 204 (287)
...+..+.+.+|...+ .++.+|+.++..... ..+.- ...++.+..|||||+|||+
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 159 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC 159 (253)
T ss_pred cCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 1122334444443221 477888865321100 00000 1135678899999999998
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|++||||| .+++.|.++.. .+|++|||++++.. |++ |++++.|+++++.
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 8 8999999999 45555555533 35699999999865 443 7777788776653
No 123
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.6e-28 Score=212.76 Aligned_cols=155 Identities=18% Similarity=0.231 Sum_probs=114.7
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGA 156 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~ 156 (287)
|+++|+++.|++.. +++++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++... .+..+
T Consensus 1 l~~~~l~~~~~~~~----~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~-~~~~i 72 (210)
T cd03269 1 LEVENVTKRFGRVT----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIA-ARNRI 72 (210)
T ss_pred CEEEEEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHH-HHccE
Confidence 46899999997655 8999999999999999999999999999999999999 9999 89999876432 22334
Q ss_pred CCCCChhH---HHHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 157 PWTFNPLL---LLNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 157 ~~~~~~~~---~~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
.+.+|... ..++.+|+.+....... .+. ....++.+.+|||||+||++| .+|+++||
T Consensus 73 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lll 152 (210)
T cd03269 73 GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLIL 152 (210)
T ss_pred EEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44444332 25778887653211100 000 012356788999999999988 89999999
Q ss_pred ec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 214 DG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 214 DE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|| .+++.+.++.+ .++++|||.+++..
T Consensus 153 DEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~ 193 (210)
T cd03269 153 DEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEE 193 (210)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 99 44555555432 24699999998764
No 124
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=2.8e-28 Score=212.15 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=116.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
.++|+++|+++.|++.. +++++||++++|++++|+|+||||||||+++|+|+++ |++| +.++|.++......
T Consensus 9 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 9 PPLLAAHALAFSRNEEP----VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRGDRS 81 (214)
T ss_pred cceEEEeeEEEecCCce----eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccchhhh
Confidence 35799999999998765 8999999999999999999999999999999999999 9999 89999765322122
Q ss_pred CCCCCCCChhHH---HHHHHHHhcCCceee-----------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 154 RGAPWTFNPLLL---LNCLKNLRNQGSVYA-----------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 154 ~~~~~~~~~~~~---~tv~e~l~~~~~~~~-----------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
..+.+.++...+ .++.+|+.+...... ..+. ....++.+..||+||+||++| .+|+++||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLL 161 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 233444443221 477777754311100 0011 112367789999999999988 89999999
Q ss_pred ec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 214 DG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 214 DE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|| .+++.+.++.+ ..|++|||++++..
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (214)
T PRK13543 162 DEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPP 202 (214)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhh
Confidence 99 34444444422 24799999998875
No 125
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-28 Score=223.12 Aligned_cols=179 Identities=16% Similarity=0.238 Sum_probs=131.9
Q ss_pred cEEEecCchhhhhhhhh--ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVYDALAQ--RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~--~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--- 149 (287)
+||+++|++++|++... ...+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++| +.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccc
Confidence 37999999999964210 1239999999999999999999999999999999999999 9999 9999976532
Q ss_pred -HhhhCCCCCCCChhH--H--HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE----
Q 023106 150 -AHARRGAPWTFNPLL--L--LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~--~--~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
...+..+++.+|... + .++.+++.++..... . .+. ....++.+.+|||||+|||+|
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral 159 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL 159 (280)
T ss_pred HHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 122344556666532 1 467888876432110 0 000 112367899999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+++.|.++.+ .++++|||++++.. |++ |+++..|+++++..
T Consensus 160 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 160 AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 8999999999 45566665532 24799999999865 444 77788888887753
No 126
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.6e-29 Score=231.42 Aligned_cols=171 Identities=18% Similarity=0.243 Sum_probs=127.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------ 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------ 149 (287)
||++ ||+|.|++.. + |+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 ~l~~-~l~k~~~~~~-----~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 1 MLEL-NFKQQLGDLC-----L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred CeEE-EEEEEeCCEE-----E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence 4788 8999998642 3 8999999999999999999999999999999999 9999 8899876432
Q ss_pred -HhhhCCCCCCCChhHH---HHHHHHHhcCCceee--------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 150 -AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
...++.+.+.+|...+ +++.+|+.++..... ..+. ....++.+.+|||||||||+| .+|+++
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ll 150 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELL 150 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 1123345566665433 689999986532110 0011 123467899999999999999 899999
Q ss_pred eEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 212 FLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
|||| .+++.|.++.+ ..|++|||++++.. |++ |+++..|+++++..
T Consensus 151 LLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 151 LMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999 44555555543 25799999998876 444 78888888888753
No 127
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2e-28 Score=220.00 Aligned_cols=175 Identities=15% Similarity=0.168 Sum_probs=127.4
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~ 148 (287)
.++|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ | ++| |.++|.++.
T Consensus 17 ~~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQ----ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND---TIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CceEEEEeEEEEECCEE----EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEECc
Confidence 45799999999998755 8999999999999999999999999999999999987 5 789 899997653
Q ss_pred H-----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee---c-------------cCCc-----cCCCCCCCceecccc
Q 023106 149 E-----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---P-------------SFDH-----GVGDPVEDDILVGLQ 200 (287)
Q Consensus 149 ~-----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---~-------------~~~~-----~~~~~~~~~LSgGek 200 (287)
. ...+..+++.+|...+ .++.+|+.+...... . .+.- ...++.+.+|||||+
T Consensus 90 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 169 (267)
T PRK14235 90 DPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQ 169 (267)
T ss_pred ccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 1 1223344555544321 378888865321100 0 0000 012457889999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
|||+| .+|++||||| .+++.|.++.. .+|++|||++.+.. |++ |++++.|+++++
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99988 8999999999 34555555433 34799999999865 443 777778877766
Q ss_pred H
Q 023106 256 A 256 (287)
Q Consensus 256 ~ 256 (287)
.
T Consensus 250 ~ 250 (267)
T PRK14235 250 F 250 (267)
T ss_pred H
Confidence 4
No 128
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.8e-28 Score=215.97 Aligned_cols=162 Identities=13% Similarity=0.165 Sum_probs=117.9
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH----
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---- 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---- 150 (287)
++|+++||++.|++......+|+++||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCCHHH
Confidence 479999999999742111238999999999999999999999999999999999999 9999 89999764211
Q ss_pred ---hhhCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE----
Q 023106 151 ---HARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 151 ---~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
.++..+.+.+|...+ +++.+|+.+...... ..+. ....++.+.+||||||||++|
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al 160 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARAL 160 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 112345555555332 578888865321100 0000 012356789999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.+|+++|||| .+++.|.++.+ .+|++|||++++..
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~ 211 (233)
T PRK11629 161 VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR 211 (233)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 8999999999 45566666532 24799999999765
No 129
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.5e-28 Score=218.56 Aligned_cols=177 Identities=15% Similarity=0.186 Sum_probs=126.2
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCcc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~--~~p~~G-i~~~g~~~~~--- 149 (287)
.+|+++||++.|++.. +++|+||+|.+|+++||+||||||||||+++|+|+++. ..|++| +.++|.++..
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 2 GKISVKDLDLFYGDFQ----ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred CeEEEEEEEEEECCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4689999999998755 89999999999999999999999999999999998750 011689 8999976532
Q ss_pred --HhhhCCCCCCCChhHH--HHHHHHHhcCCceeec---------------cCCc-----cCCCCCCCceeccccceEEE
Q 023106 150 --AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYAP---------------SFDH-----GVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~---------------~~~~-----~~~~~~~~~LSgGekqRv~I 205 (287)
...+..+.+.+|...+ .++.+|+.+....... .+.. ...++.+.+|||||+||++|
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 157 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCI 157 (250)
T ss_pred chHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHH
Confidence 1122334444444322 5788888764211100 0000 11256788999999999988
Q ss_pred -----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+++.|.++.. .+|++|||++.+.. |++ |++++.|++.++.
T Consensus 158 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 158 ARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 8999999999 44555555432 24799999998866 443 7777778776653
No 130
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.94 E-value=1.9e-28 Score=216.15 Aligned_cols=176 Identities=16% Similarity=0.223 Sum_probs=127.0
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~ 153 (287)
|+++|+++.|+... ..+|+++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (237)
T cd03252 1 ITFEHVRFRYKPDG--PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAWLR 75 (237)
T ss_pred CEEEEEEEecCCCC--ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHHHh
Confidence 46899999996411 128999999999999999999999999999999999999 9999 8999986532 1122
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceee-cc-------CC------------ccCCCCCCCceeccccceEEE-----e
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYA-PS-------FD------------HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~~-------~~------------~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+.+.+|...+ .++.+|+.+...... .. .. ....++.+.+|||||||||+| .
T Consensus 76 ~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 155 (237)
T cd03252 76 RQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIH 155 (237)
T ss_pred hcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhh
Confidence 334555554332 588899876432100 00 00 001245789999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
+|+++|||| .+++.|.++... +|++|||++++.. +++ |++++.|+++++...
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 156 NPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999 455566655432 4699999999854 333 677778887776544
No 131
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.94 E-value=3.9e-28 Score=235.06 Aligned_cols=193 Identities=18% Similarity=0.152 Sum_probs=136.3
Q ss_pred chhhhhcCcCcCcc--cCccch-hhhhhhh---hhhhh------------hc-CCCccEEEecCchhhhhhh-hhccccc
Q 023106 38 SFSWIRRNANAQPV--FGKTRS-LVQNKTS---LKVLC------------SQ-RREIPVVEARCMDEVYDAL-AQRLLPT 97 (287)
Q Consensus 38 ~~~~~~r~~~~~~~--~~~~r~-~~~~~~~---~~~~~------------~~-~~~~~~i~~~~l~~~y~~~-~~~~~~l 97 (287)
.++|++|+.+++.+ ++++|. +++++.. ..... .. ..+..+++++|+++.|++. . ++
T Consensus 263 ~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~~----l~ 338 (530)
T COG0488 263 EQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRL----LL 338 (530)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCCce----ee
Confidence 56999997766555 666664 3333321 00000 00 1234589999999999764 4 89
Q ss_pred cccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHhcCCc
Q 023106 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS 177 (287)
Q Consensus 98 ~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~ 177 (287)
+++||.|.+|++|||+||||+|||||+|+|+|.+. |.+|.+..|..+...++.+.....+.. .++++++.....
T Consensus 339 ~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~~v~igyf~Q~~~~l~~~---~t~~d~l~~~~~ 412 (530)
T COG0488 339 KDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGETVKIGYFDQHRDELDPD---KTVLEELSEGFP 412 (530)
T ss_pred cCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCCceEEEEEEehhhhcCcc---CcHHHHHHhhCc
Confidence 99999999999999999999999999999999999 999966667666555555543222211 255555554331
Q ss_pred ----------eeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-------chHHHHHh---ccCC-eEEE
Q 023106 178 ----------VYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-------GVWKDVSS---MFDE-KWFI 231 (287)
Q Consensus 178 ----------~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-------~~~~~l~~---~~~~-~i~v 231 (287)
+....|......+.+..||||||.|+.+ .+||+||||| +.++.|.+ -++. +|+|
T Consensus 413 ~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~V 492 (530)
T COG0488 413 DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLV 492 (530)
T ss_pred cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEE
Confidence 1234566667788999999999999887 8999999999 33333333 3444 5799
Q ss_pred EcChHHHHH
Q 023106 232 EVDLDTAMQ 240 (287)
Q Consensus 232 tHd~~~~~~ 240 (287)
|||+.++..
T Consensus 493 SHDr~Fl~~ 501 (530)
T COG0488 493 SHDRYFLDR 501 (530)
T ss_pred eCCHHHHHh
Confidence 999999975
No 132
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.9e-28 Score=218.04 Aligned_cols=174 Identities=14% Similarity=0.149 Sum_probs=127.6
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPKE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~~ 149 (287)
++|+++|+++.|++.. +|+|+||+|.+|++++|+|+||||||||+++|+|+++ | ++| +.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 3 IKMESKNLNLWYGEKQ----ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMND---LISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred cEEEEEEeEEEECCee----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---cccCCCCccEEEECCEeccc
Confidence 4799999999998655 8999999999999999999999999999999999987 5 689 8999976531
Q ss_pred -----HhhhCCCCCCCChhHH--HHHHHHHhcCCceeec---------------cCC-----ccCCCCCCCceeccccce
Q 023106 150 -----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYAP---------------SFD-----HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 -----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~---------------~~~-----~~~~~~~~~~LSgGekqR 202 (287)
...+..+.+.+|...+ .++.+|+.+....... .+. ....++.+..||+||+||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 155 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQR 155 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence 1223334444443321 5788888754211100 000 012356789999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
++| .+|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 988 8999999999 44555555433 35799999998865 444 7888888887764
No 133
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.94 E-value=1.8e-28 Score=239.03 Aligned_cols=175 Identities=19% Similarity=0.220 Sum_probs=131.3
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
+++|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 9 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 81 (510)
T PRK15439 9 PPLLCARSISKQYSGVE----VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARLTPA 81 (510)
T ss_pred CceEEEEeEEEEeCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence 34799999999998765 8999999999999999999999999999999999999 9999 8899875421
Q ss_pred HhhhCCCCCCCChhH---HHHHHHHHhcCCceee----------ccCC-ccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 150 AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYA----------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~----------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
...+.++++.+|... .+++.+|+.++..... ..+. ....++.+.+|||||||||+| .+|++
T Consensus 82 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~l 161 (510)
T PRK15439 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI 161 (510)
T ss_pred HHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 112234555555432 2688899876532110 0011 113367889999999999998 89999
Q ss_pred EeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 162 LILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 99999 45555655533 24699999999876 444 7777788877664
No 134
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.94 E-value=2e-28 Score=238.23 Aligned_cols=173 Identities=17% Similarity=0.246 Sum_probs=130.1
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----H
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~ 150 (287)
+||+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 3 ~~i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 3 ALLQLKGIDKAFPGVK----ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGPKS 75 (501)
T ss_pred ceEEEeeeEEEeCCeE----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 3699999999998755 8999999999999999999999999999999999999 9999 8899875421 1
Q ss_pred hhhCCCCCCCChhHH---HHHHHHHhcCCceee--cc----------------CC-ccCCCCCCCceeccccceEEE---
Q 023106 151 HARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--PS----------------FD-HGVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--~~----------------~~-~~~~~~~~~~LSgGekqRv~I--- 205 (287)
..+..+.+.+|...+ +++.+|+.++..... .. +. ....++.+.+|||||||||+|
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 155 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKV 155 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHH
Confidence 123445666665432 689999887532110 00 00 012367889999999999988
Q ss_pred --ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |+++..|+++++
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 156 LSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 8999999999 44555555433 24799999999876 444 777777777655
No 135
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.9e-29 Score=215.67 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=113.6
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH--hhhC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--HARR 154 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--~~~~ 154 (287)
|+++|+++.|++.. +++|+||++++| +++|+||||||||||+++|+|+++ |++| +.++|.++... ..+.
T Consensus 1 i~~~~~~~~~~~~~----~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 72 (211)
T cd03264 1 LQLENLTKRYGKKR----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLRR 72 (211)
T ss_pred CEEEEEEEEECCEE----EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHHh
Confidence 47899999997655 899999999999 999999999999999999999999 9999 89999765321 1123
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
.+.+.+|...+ +++.+|+.+...... . .+. ....++.+.+|||||+|||+| .+|+++
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 152 (211)
T cd03264 73 RIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSIL 152 (211)
T ss_pred heEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 34444444322 577888765321110 0 000 012356889999999999988 899999
Q ss_pred eEec-----------chHHHHHhccC--CeEEEEcChHHHHH
Q 023106 212 FLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
|||| .+++.|.++.+ ..|++|||++++..
T Consensus 153 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~ 194 (211)
T cd03264 153 IVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVES 194 (211)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 9999 34555555433 24699999998864
No 136
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.8e-28 Score=218.93 Aligned_cols=155 Identities=15% Similarity=0.178 Sum_probs=115.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
||+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.... ..
T Consensus 1 ml~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~--~~ 71 (255)
T PRK11248 1 MLQISHLYADYGGKP----ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPG--AE 71 (255)
T ss_pred CEEEEEEEEEeCCee----eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCC--Cc
Confidence 488999999998755 8999999999999999999999999999999999999 9999 889987653211 11
Q ss_pred CCCCCChhH---HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 156 APWTFNPLL---LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 156 ~~~~~~~~~---~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
+.+.+|... ..++.+|+.+...... . .+. ....++.+..|||||+|||+| .+|++||
T Consensus 72 ~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lll 151 (255)
T PRK11248 72 RGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151 (255)
T ss_pred EEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 233344322 2577888765321100 0 000 012356789999999999988 8999999
Q ss_pred Eec-----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 213 LDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
||| .+++.|.++.. .+|++|||++++..
T Consensus 152 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~ 194 (255)
T PRK11248 152 LDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVF 194 (255)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999 45566665522 24799999998865
No 137
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3e-28 Score=214.36 Aligned_cols=174 Identities=20% Similarity=0.236 Sum_probs=124.8
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~ 153 (287)
|+++|+++.|++.. ..+++++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 75 (234)
T cd03251 1 VEFKNVTFRYPGDG--PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLASLR 75 (234)
T ss_pred CEEEEEEEEeCCCC--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHHHHH
Confidence 46899999997641 128999999999999999999999999999999999999 9999 8999976532 1122
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceee-c---------cCC----------ccCCCCCCCceeccccceEEE-----e
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYA-P---------SFD----------HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~---------~~~----------~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+.+.++...+ .++.+|+.+...... . ... ....++.+..||+||+||+.| .
T Consensus 76 ~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 155 (234)
T cd03251 76 RQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLK 155 (234)
T ss_pred hhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhc
Confidence 334444444322 588899876532110 0 000 011245688999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
+|+++|||| .+++.|.++.+. .|++|||++++.. +++ |++++.|+++++.
T Consensus 156 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 224 (234)
T cd03251 156 DPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELL 224 (234)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHH
Confidence 999999999 455555555433 4699999999865 333 6666677766653
No 138
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.94 E-value=9.8e-29 Score=220.03 Aligned_cols=172 Identities=19% Similarity=0.264 Sum_probs=126.2
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-------
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------- 149 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------- 149 (287)
|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~ 73 (252)
T TIGR03005 1 VRFSDVTKRFGILT----VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNGP 73 (252)
T ss_pred CEEEEEEEEeCCee----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence 47899999998655 8999999999999999999999999999999999999 9999 8899875421
Q ss_pred ---------HhhhCCCCCCCChhHH---HHHHHHHhcCCc----eeec-----------cCC-ccCCCCCCCceeccccc
Q 023106 150 ---------AHARRGAPWTFNPLLL---LNCLKNLRNQGS----VYAP-----------SFD-HGVGDPVEDDILVGLQH 201 (287)
Q Consensus 150 ---------~~~~~~~~~~~~~~~~---~tv~e~l~~~~~----~~~~-----------~~~-~~~~~~~~~~LSgGekq 201 (287)
...+..+.+.+|...+ .++.+|+.+... .... .+. ....++.+.+|||||+|
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 153 (252)
T TIGR03005 74 LVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQ 153 (252)
T ss_pred ccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHH
Confidence 1123345555554332 578888865311 0000 000 01235678999999999
Q ss_pred eEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 202 KVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 202 Rv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
|++| .+|+++|||| .+++.|.++.+ ..|++|||++++.. |++ |++++.|+.++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T TIGR03005 154 RVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDE 233 (252)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9998 8999999999 45555655543 24799999999865 443 77777887776
Q ss_pred HH
Q 023106 255 VA 256 (287)
Q Consensus 255 ~~ 256 (287)
+.
T Consensus 234 ~~ 235 (252)
T TIGR03005 234 IF 235 (252)
T ss_pred Hh
Confidence 63
No 139
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.1e-28 Score=221.23 Aligned_cols=178 Identities=15% Similarity=0.157 Sum_probs=127.8
Q ss_pred EEEecCchhhhhhhhh-ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~-~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
.|+++||++.|++... ...+|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccc
Confidence 4899999999975210 1238999999999999999999999999999999999999 9999 8899975421
Q ss_pred --HhhhCCCCCCCChh--HH--HHHHHHHhcCCceee--------------ccCCc--cCCCCCCCceeccccceEEE--
Q 023106 150 --AHARRGAPWTFNPL--LL--LNCLKNLRNQGSVYA--------------PSFDH--GVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~--~~--~tv~e~l~~~~~~~~--------------~~~~~--~~~~~~~~~LSgGekqRv~I-- 205 (287)
...+..+.+.+|.. .+ .++.+|+.+...... ..+.- ...++.+.+|||||+||++|
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~ 158 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAG 158 (280)
T ss_pred CHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 11233455555543 11 488888865321100 01111 12367789999999999988
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. +++ |++++.|+++++..
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 159 ILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 8999999999 34555555432 24699999998865 443 77777888777644
No 140
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2e-28 Score=213.77 Aligned_cols=158 Identities=20% Similarity=0.315 Sum_probs=113.9
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGA 156 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~ 156 (287)
|+++|+++.|++......+|+++||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++... ...+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~--~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGP--GPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccc--cCcE
Confidence 4689999999761100128999999999999999999999999999999999999 9999 88999765321 2234
Q ss_pred CCCCChhHH---HHHHHHHhcCCceee--------------ccCCc-cCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 157 PWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFDH-GVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 157 ~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~~-~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
.+.+|...+ .++.+|+.+...... ..+.- ...++.+..|||||+||++| .+|+++||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllL 155 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLL 155 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 444443322 577788765321110 00110 12356789999999999988 89999999
Q ss_pred ec-----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 214 DG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 214 DE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
|| .+++.|.++.. .++++|||++++..
T Consensus 156 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~ 197 (220)
T cd03293 156 DEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVF 197 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 99 45566665532 24699999998754
No 141
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.94 E-value=4e-28 Score=217.35 Aligned_cols=173 Identities=16% Similarity=0.226 Sum_probs=128.2
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---cc-eeeCCCCHHH--
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KA-SSFDSQDPKE-- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~---~G-i~~~g~~~~~-- 149 (287)
++|+++||++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |+ +| +.++|.++..
T Consensus 3 ~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~~~~G~i~~~g~~~~~~~ 75 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDKSAGSHIELLGRTVQREG 75 (262)
T ss_pred cEEEEeeEEEEeCCeE----EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCCceEEEECCEeccccc
Confidence 3799999999998765 8999999999999999999999999999999999998 76 48 8899976521
Q ss_pred ------HhhhCCCCCCCChhH---HHHHHHHHhcCCceee-------cc---------------CCc-cCCCCCCCceec
Q 023106 150 ------AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYA-------PS---------------FDH-GVGDPVEDDILV 197 (287)
Q Consensus 150 ------~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-------~~---------------~~~-~~~~~~~~~LSg 197 (287)
...+..+.+.++... .+++.+|+.+...... .. +.- ...++.+..||+
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 155 (262)
T PRK09984 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSG 155 (262)
T ss_pred ccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCH
Confidence 112233555555432 2688899875421000 00 000 123678899999
Q ss_pred cccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCC
Q 023106 198 GLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 198 GekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G 250 (287)
||+|||+| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g 235 (262)
T PRK09984 156 GQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDG 235 (262)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999988 8999999999 45556666542 24799999998766 444 6777888
Q ss_pred CcHHH
Q 023106 251 KPPDV 255 (287)
Q Consensus 251 ~~~~~ 255 (287)
+++++
T Consensus 236 ~~~~~ 240 (262)
T PRK09984 236 SSQQF 240 (262)
T ss_pred CHHHh
Confidence 87765
No 142
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.94 E-value=7e-28 Score=240.21 Aligned_cols=176 Identities=16% Similarity=0.219 Sum_probs=141.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
-|+++||+++|+.... .+|+|+||+|++||++||+|+||||||||+|+|.|++. |++| |.+||.++... ..
T Consensus 471 ~I~~~nvsf~y~~~~~--~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~---p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 471 EIEFENVSFRYGPDDP--PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred eEEEEEEEEEeCCCCc--chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEeHHhcCHHHH
Confidence 5999999999987531 48999999999999999999999999999999999999 9999 99999987542 34
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-c--------------------cCCccCCCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-P--------------------SFDHGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~--------------------~~~~~~~~~~~~~LSgGekqRv~I---- 205 (287)
++.++++.|+..+ -++.||+.++..... . .|+. .-......||||||||++|
T Consensus 546 R~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t-~v~E~G~~LSGGQrQrlalARaL 624 (709)
T COG2274 546 RRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDT-PVGEGGANLSGGQRQRLALARAL 624 (709)
T ss_pred HhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccc-ccccCCCCCCHHHHHHHHHHHHh
Confidence 5567777777665 689999998644211 0 0111 1123456799999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhcc--CCeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMF--DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~--~~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|++||||| .+.+.|.+.. ...|+|+|....+.. |++ |+++++|+.+++...
T Consensus 625 l~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 625 LSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred ccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 9999999999 4566677766 446899999999988 655 999999999998654
No 143
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.94 E-value=4.6e-28 Score=210.17 Aligned_cols=156 Identities=18% Similarity=0.258 Sum_probs=115.9
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH-----HHh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK-----EAH 151 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~-----~~~ 151 (287)
|+++||++.|++.. +|+++||++.+|+++||+||||||||||+++|+|+++ |++| +.++|.++. ...
T Consensus 1 l~~~~l~~~~~~~~----~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03262 1 IEIKNLHKSFGDFH----VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNINE 73 (213)
T ss_pred CEEEEEEEEECCeE----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHHH
Confidence 46899999998755 8999999999999999999999999999999999999 9999 889987542 112
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCc-eee--------------ccCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGS-VYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~-~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.+..+.+.++...+ .++.+|+.+... ... ..+. ....++.+.+|||||+||++| .+
T Consensus 74 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 153 (213)
T cd03262 74 LRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMN 153 (213)
T ss_pred HHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcC
Confidence 23445555554432 578888865321 000 0010 012367889999999999988 89
Q ss_pred CCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|+++|||| .+++.|.++.+ .+|++|||++++..
T Consensus 154 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~ 200 (213)
T cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFARE 200 (213)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99999999 44555555533 24699999998864
No 144
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.1e-28 Score=236.47 Aligned_cols=174 Identities=18% Similarity=0.235 Sum_probs=130.9
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----H
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~ 150 (287)
++|+++|+++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 4 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 4 PYISMAGIGKSFGPVH----ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDHKL 76 (510)
T ss_pred ceEEEeeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCHHH
Confidence 4799999999998765 8999999999999999999999999999999999999 9999 8899876421 1
Q ss_pred hhhCCCCCCCChhHH---HHHHHHHhcCCce----eec-----------------cCC-ccCCCCCCCceeccccceEEE
Q 023106 151 HARRGAPWTFNPLLL---LNCLKNLRNQGSV----YAP-----------------SFD-HGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~----~~~-----------------~~~-~~~~~~~~~~LSgGekqRv~I 205 (287)
..+.++.+.+|...+ +++.+|+.++... ... .+. ....++.+.+|||||||||+|
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~i 156 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEI 156 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHH
Confidence 123345666655332 6888998764311 000 000 012367889999999999988
Q ss_pred -----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |+++..|+++++.
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 157 AKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 8999999999 45555555543 24799999999876 444 7777788877653
No 145
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.7e-28 Score=217.30 Aligned_cols=171 Identities=20% Similarity=0.337 Sum_probs=125.6
Q ss_pred EEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 78 i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
|+++||++.|++ .. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGGGKK----AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCCcce----EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHh
Confidence 468899999986 44 8999999999999999999999999999999999999 9999 8899976422 112
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCCcc---CCCCCCCceeccccceEEE-----ec
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFDHG---VGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~~~---~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
+..+.+.+|...+ .++.+|+.+...... ..+.-. ..++.+.+|||||+|||+| .+
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~ 153 (242)
T cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAAD 153 (242)
T ss_pred hcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcC
Confidence 2345555554332 588888865421110 011111 2357789999999999988 89
Q ss_pred CCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
|+++|||| .+++.|.++.+ .+|++|||.+.+.. +++ |++++.|+++++
T Consensus 154 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 154 PPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999 44555555532 24799999998765 443 677777776665
No 146
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.7e-28 Score=217.32 Aligned_cols=178 Identities=13% Similarity=0.197 Sum_probs=127.8
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~--- 149 (287)
.+|+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++.. .|++| +.++|.++..
T Consensus 12 ~~l~i~nl~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 12 IIISLQNVTISYGTFE----AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred ceEEEEeEEEEECCEE----EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 3799999999998755 899999999999999999999999999999999997610 13789 8899876421
Q ss_pred --HhhhCCCCCCCChhHH--HHHHHHHhcCCceeec-------------cCC-----ccCCCCCCCceeccccceEEE--
Q 023106 150 --AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYAP-------------SFD-----HGVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-------------~~~-----~~~~~~~~~~LSgGekqRv~I-- 205 (287)
...+..+.+.+|...+ .++.+|+.+....... .+. ....++.+.+||+||||||+|
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lar 167 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIAR 167 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHH
Confidence 1222345555554322 4888998764321100 000 012356788999999999988
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH---------------HHHhcCCC
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL---------------KRHISTGK 251 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi---------------gr~i~~G~ 251 (287)
.+|++||||| .+++.|.++.. .+|++|||++++.. |++ |++++.|+
T Consensus 168 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~ 247 (269)
T PRK14259 168 TIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNE 247 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCC
Confidence 8999999999 45555555533 24799999999876 332 24567888
Q ss_pred cHHHHH
Q 023106 252 PPDVAK 257 (287)
Q Consensus 252 ~~~~~~ 257 (287)
+.++..
T Consensus 248 ~~~~~~ 253 (269)
T PRK14259 248 TKKIFN 253 (269)
T ss_pred HHHHHh
Confidence 887754
No 147
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.94 E-value=2.8e-28 Score=212.73 Aligned_cols=160 Identities=15% Similarity=0.168 Sum_probs=115.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA----- 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~----- 150 (287)
+|+++||++.|++......+|+++||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcCHhHH
Confidence 37899999999642111238999999999999999999999999999999999999 9999 88999765321
Q ss_pred --hhhCCCCCCCChhHH---HHHHHHHhcCCcee---e-----------ccCC-ccCCCCCCCceeccccceEEE-----
Q 023106 151 --HARRGAPWTFNPLLL---LNCLKNLRNQGSVY---A-----------PSFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 151 --~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~---~-----------~~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
.+...+.+.+|...+ .++.+|+.+..... . ..+. ....++.+..|||||+|||+|
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 111334555554322 57888886531110 0 0000 012357889999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
.+|+++|||| .+++.|.++.+ .+|++|||++++.
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~ 206 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAK 206 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 8999999999 45556655532 2479999999874
No 148
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.2e-28 Score=237.06 Aligned_cols=173 Identities=20% Similarity=0.259 Sum_probs=130.4
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--Ccc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p--~~G-i~~~g~~~~~--- 149 (287)
+||+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ | ++| +.++|.++..
T Consensus 4 ~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~~~ 76 (506)
T PRK13549 4 YLLEMKNITKTFGGVK----ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQASNI 76 (506)
T ss_pred ceEEEeeeEEEeCCeE----eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCH
Confidence 4799999999998755 9999999999999999999999999999999999998 7 789 8899976421
Q ss_pred -HhhhCCCCCCCChhHH---HHHHHHHhcCCceee----c-------------cCC-ccCCCCCCCceeccccceEEE--
Q 023106 150 -AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA----P-------------SFD-HGVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~----~-------------~~~-~~~~~~~~~~LSgGekqRv~I-- 205 (287)
...+.++++.+|...+ +++.+|+.++..... . .+. ....++.+.+|||||||||+|
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~ 156 (506)
T PRK13549 77 RDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAK 156 (506)
T ss_pred HHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHH
Confidence 1123445666665432 688999877532210 0 000 113367889999999999988
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |+++..|+++++
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 157 ALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 8999999999 45555655533 24799999999876 444 777777877665
No 149
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.6e-28 Score=217.07 Aligned_cols=175 Identities=15% Similarity=0.174 Sum_probs=126.7
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh---cccCC--Ccc-eeeCCCCHHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI---NKIWP--QKA-SSFDSQDPKE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll---~~~~p--~~G-i~~~g~~~~~ 149 (287)
++|+++|+++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+. + | ++| +.++|.++..
T Consensus 2 ~~l~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 2 VKIDARDVNFWYGDFH----ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP---ATRLEGEIRIDGRNIYD 74 (250)
T ss_pred cEEEEEEEEEEECCEe----EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC---CCCCceEEEECCEeccc
Confidence 4799999999998755 899999999999999999999999999999999973 4 4 478 8899986532
Q ss_pred -----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee---------------ccCCc-----cCCCCCCCceeccccce
Q 023106 150 -----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---------------PSFDH-----GVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 -----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---------------~~~~~-----~~~~~~~~~LSgGekqR 202 (287)
...+.++.+.+|...+ .++.+|+.++..... ..+.- ...++.+.+|||||+||
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 1223345555544322 477788765321100 00100 12346788999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
++| .+|+++|||| .+++.|.++.. .+|++|||++.+.. |++ |++++.|+++++..
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 988 8999999999 44555555533 25799999999865 544 78888888887743
No 150
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.5e-28 Score=217.21 Aligned_cols=174 Identities=16% Similarity=0.215 Sum_probs=126.0
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh--cccCC---Ccc-eeeCCCCHHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWP---QKA-SSFDSQDPKE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll--~~~~p---~~G-i~~~g~~~~~ 149 (287)
++|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|++ . | ++| +.++|.++..
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 4 PILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHNIYS 76 (252)
T ss_pred ceEEEEeeEEEECCee----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEECcC
Confidence 4799999999998655 899999999999999999999999999999999984 4 5 489 8899976521
Q ss_pred -----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee---c------------cCC-----ccCCCCCCCceeccccce
Q 023106 150 -----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---P------------SFD-----HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 -----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---~------------~~~-----~~~~~~~~~~LSgGekqR 202 (287)
...+..+.+.+|...+ .++.+|+.+...... . .+. ....++.+.+||+||+||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred cccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 1122344555544322 578888865321100 0 000 012356788999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|+| .+|+++|||| .+++.|.++.. .+|++|||++++.. |++ |++++.|++.++.
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 988 8999999999 44555555432 35799999998765 444 7777888877764
No 151
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=4.5e-28 Score=202.73 Aligned_cols=173 Identities=21% Similarity=0.262 Sum_probs=137.2
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC-CCH----HH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS-QDP----KE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g-~~~----~~ 149 (287)
++++++||+.+|++.. +|+++||++.+|+.-+|||||||||||++..|+|.-+ |+.| ++++| .++ ..
T Consensus 4 ~iL~~~~vsVsF~GF~----Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr---p~~G~v~f~g~~dl~~~~e~ 76 (249)
T COG4674 4 IILYLDGVSVSFGGFK----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH 76 (249)
T ss_pred ceEEEeceEEEEccee----eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC---CCcceEEEcCchhhccCCHH
Confidence 3799999999999987 9999999999999999999999999999999999999 9999 88888 443 23
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceeeccCC-------c----------------cCCCCCCCceeccccceE
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD-------H----------------GVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~-------~----------------~~~~~~~~~LSgGekqRv 203 (287)
...+.|++-.||.+.+ +++++|+..........|. . ...++.+..||-||||++
T Consensus 77 ~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwL 156 (249)
T COG4674 77 RIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWL 156 (249)
T ss_pred HHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhh
Confidence 3556778777877654 7999999875443222111 0 133677889999999998
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
.| ++|.+|++|| ..-+.+..+... +++|.|||.++.. ++. |.+.++|+.+++
T Consensus 157 EIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v 233 (249)
T COG4674 157 EIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233 (249)
T ss_pred hhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHh
Confidence 87 9999999999 344555555543 5699999999987 322 788889988877
No 152
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.94 E-value=2.5e-28 Score=219.34 Aligned_cols=177 Identities=14% Similarity=0.166 Sum_probs=124.3
Q ss_pred EEEecCchhhhhhhh-----hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-
Q 023106 77 VVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~-----~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~- 149 (287)
||+++||+++|++.. ....+|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~ 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLIDDHPLHFG 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCC
Confidence 699999999996311 01238999999999999999999999999999999999999 9999 8899876431
Q ss_pred --HhhhCCCCCCCChhH-----HHHHHHHHhcCCcee----e-----------ccCC--ccCCCCCCCceeccccceEEE
Q 023106 150 --AHARRGAPWTFNPLL-----LLNCLKNLRNQGSVY----A-----------PSFD--HGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~----~-----------~~~~--~~~~~~~~~~LSgGekqRv~I 205 (287)
......+.+.+|... ..++.+++.+..... . ..+. ....++.+.+|||||+|||+|
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l 160 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGL 160 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHH
Confidence 112223444444321 135555554321100 0 0011 112355788999999999998
Q ss_pred -----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 161 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 161 ARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred HHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 8999999999 45555665532 24799999999875 443 6777778777664
No 153
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.7e-28 Score=217.07 Aligned_cols=173 Identities=14% Similarity=0.220 Sum_probs=126.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHHH-
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPKE- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~~- 149 (287)
+|+++|+++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ | ++| |.++|.++..
T Consensus 4 ~l~i~~v~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~---~~~~~~~~G~I~~~g~~~~~~ 76 (258)
T PRK14241 4 RIDVKDLNIYYGSFH----AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHE---VIPGARVEGEVLLDGEDLYGP 76 (258)
T ss_pred cEEEeeEEEEECCEe----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cccCCCcceEEEECCEecccc
Confidence 699999999998755 9999999999999999999999999999999999987 5 689 8899976521
Q ss_pred ----HhhhCCCCCCCChhHH---HHHHHHHhcCCceee--c-------------cCC-----ccCCCCCCCceeccccce
Q 023106 150 ----AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--P-------------SFD-----HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 ----~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--~-------------~~~-----~~~~~~~~~~LSgGekqR 202 (287)
...+..+.+.++...+ .++.+|+.+...... . .+. ....++.+.+|||||+||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (258)
T PRK14241 77 GVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQR 156 (258)
T ss_pred ccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence 1223345555554322 577888765321100 0 000 012356789999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----------HHHhcCCC
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----------KRHISTGK 251 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----------gr~i~~G~ 251 (287)
|+| .+|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~ 236 (258)
T PRK14241 157 LCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDD 236 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCC
Confidence 988 8999999999 34555555433 35799999999875 432 66777888
Q ss_pred cHHHH
Q 023106 252 PPDVA 256 (287)
Q Consensus 252 ~~~~~ 256 (287)
++++.
T Consensus 237 ~~~~~ 241 (258)
T PRK14241 237 TEKIF 241 (258)
T ss_pred HHHHH
Confidence 77764
No 154
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.9e-28 Score=215.47 Aligned_cols=176 Identities=14% Similarity=0.180 Sum_probs=126.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
+|+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++...|++| +.++|+++.. ...
T Consensus 2 ~~~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 2 IAKTTNLNLFYGKKQ----ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77 (246)
T ss_pred ceeeeeeEEEECCEe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence 589999999998655 89999999999999999999999999999999999741116889 8999986532 122
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee----------------ccCCc-----cCCCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA----------------PSFDH-----GVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~----------------~~~~~-----~~~~~~~~~LSgGekqRv~I---- 205 (287)
+..+.+.+|...+ .++.+|+.+...... ..+.- ...++.+..|||||+|||+|
T Consensus 78 ~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 157 (246)
T PRK14269 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL 157 (246)
T ss_pred hhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH
Confidence 3344555554322 588888865421110 00000 11346778999999999998
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+.+.|.++... ++++|||++++.. |++ |++++.|++.++.
T Consensus 158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 158 AIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 8999999999 445555554332 4699999998875 443 7877888877663
No 155
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3e-28 Score=216.71 Aligned_cols=173 Identities=15% Similarity=0.189 Sum_probs=126.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----cc-eeeCCCCHHH-
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KA-SSFDSQDPKE- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~-----~G-i~~~g~~~~~- 149 (287)
+|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |+ +| +.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~~ 76 (252)
T PRK14272 4 LLSAQDVNIYYGDKQ----AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYGP 76 (252)
T ss_pred EEEEeeeEEEECCEE----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEcccC
Confidence 699999999998655 9999999999999999999999999999999999987 64 78 8899876531
Q ss_pred ----HhhhCCCCCCCChhHH---HHHHHHHhcCCcee---ec------------cCC-----ccCCCCCCCceeccccce
Q 023106 150 ----AHARRGAPWTFNPLLL---LNCLKNLRNQGSVY---AP------------SFD-----HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 ----~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~---~~------------~~~-----~~~~~~~~~~LSgGekqR 202 (287)
...+.++.+.+|...+ .++.+|+.+..... .. .+. ....++.+..|||||+||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14272 77 RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQR 156 (252)
T ss_pred ccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHH
Confidence 1223345555554322 57778876431100 00 000 012356789999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
++| .+|+++|||| .+.+.|+++.. ..|++|||++.+.. |++ |++++.|+++++.
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 988 8999999999 34455555432 24799999999876 443 7777888877764
No 156
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3e-28 Score=221.26 Aligned_cols=177 Identities=14% Similarity=0.158 Sum_probs=127.7
Q ss_pred EEEecCchhhhhhhhh-ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH------
Q 023106 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK------ 148 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~-~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~------ 148 (287)
.|+++||++.|++... ...+|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccccccc
Confidence 5899999999975310 1238999999999999999999999999999999999999 9999 888886542
Q ss_pred --HHhhhCCCCCCCChh----HHHHHHHHHhcCCceee--------------ccCC--ccCCCCCCCceeccccceEEE-
Q 023106 149 --EAHARRGAPWTFNPL----LLLNCLKNLRNQGSVYA--------------PSFD--HGVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 149 --~~~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~--------------~~~~--~~~~~~~~~~LSgGekqRv~I- 205 (287)
....+..+.+.+|.. ...++.+|+.+...... ..+. ....++.+.+|||||+|||+|
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~la 162 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALA 162 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHH
Confidence 111223455555542 12588888875321100 0111 123367889999999999988
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++.. .+|++|||++++.. |++ |++++.|++.++.
T Consensus 163 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 163 GIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 8999999999 45555555532 24799999998865 443 7777788877654
No 157
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.5e-28 Score=216.83 Aligned_cols=178 Identities=14% Similarity=0.175 Sum_probs=128.0
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~--~~p~~G-i~~~g~~~~~-- 149 (287)
..+|+++|+++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|++.. ..|++| +.++|.++..
T Consensus 11 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFH----ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred CceEEEEEEEEEeCCeE----EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 34799999999998654 89999999999999999999999999999999999851 114789 8899876521
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCcee-e-c-------------cCCc-----cCCCCCCCceeccccceEE
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVY-A-P-------------SFDH-----GVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~-~-~-------------~~~~-----~~~~~~~~~LSgGekqRv~ 204 (287)
...+..+.+.+|...+ .++.+|+.+..... . . .+.. ...++.+.+|||||+||++
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 166 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC 166 (260)
T ss_pred cchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence 1123345555554322 58888887542111 0 0 0000 1135678899999999999
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|++||||| .+++.|.++.. .+|++|||++.+.. |++ |++++.|+++++.
T Consensus 167 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 8 8999999999 44555555533 24699999998865 444 7777888877764
No 158
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.4e-28 Score=220.45 Aligned_cols=174 Identities=18% Similarity=0.224 Sum_probs=129.8
Q ss_pred EEEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
||+++||++.|++ .. +++++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (275)
T PRK13639 1 ILETRDLKYSYPDGTE----ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKSL 73 (275)
T ss_pred CEEEEEEEEEeCCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccchH
Confidence 4889999999963 33 8999999999999999999999999999999999999 9999 9999976521
Q ss_pred HhhhCCCCCCCChhH----HHHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 150 AHARRGAPWTFNPLL----LLNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
...+..+++.+|... ..++.+|+.++...... .+. ....++.+.+|||||+||++|
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 74 LEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILA 153 (275)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 112334556666531 15888888753211000 000 123467899999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+++.|.++.+ .++++|||++.+.. |++ |++++.|+++++..
T Consensus 154 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 8999999999 45556665543 24799999999875 444 77788888887653
No 159
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.94 E-value=4.4e-28 Score=218.34 Aligned_cols=174 Identities=17% Similarity=0.140 Sum_probs=126.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC--------cc-eeeCCCCH
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KA-SSFDSQDP 147 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~--------~G-i~~~g~~~ 147 (287)
||+++|+++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |+ +| +.++|.++
T Consensus 1 ml~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 1 MLTADHLHVARRHRA----ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred CeEEEEEEEEECCEe----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEc
Confidence 489999999998765 9999999999999999999999999999999999998 87 88 88999765
Q ss_pred HH---HhhhCCCCCCCChhH---HHHHHHHHhcCCceee---cc---------------CC-ccCCCCCCCceeccccce
Q 023106 148 KE---AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYA---PS---------------FD-HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 148 ~~---~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~---~~---------------~~-~~~~~~~~~~LSgGekqR 202 (287)
.. ...+..+.+.+|... .+++.+|+.+...... .. +. ....++.+.+|||||+||
T Consensus 74 ~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 153 (272)
T PRK13547 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELAR 153 (272)
T ss_pred ccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHH
Confidence 32 111222334444321 2688899876432110 00 00 012357889999999999
Q ss_pred EEE----e----------cCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHH
Q 023106 203 VVI----V----------DGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRH 246 (287)
Q Consensus 203 v~I----~----------~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~ 246 (287)
|+| . +|++||||| .+++.|.++.. .+|++|||++++.. +++ |++
T Consensus 154 v~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i 233 (272)
T PRK13547 154 VQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAI 233 (272)
T ss_pred HHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeE
Confidence 988 3 899999999 45555555432 24799999999865 443 777
Q ss_pred hcCCCcHHHHH
Q 023106 247 ISTGKPPDVAK 257 (287)
Q Consensus 247 i~~G~~~~~~~ 257 (287)
++.|+++++..
T Consensus 234 ~~~g~~~~~~~ 244 (272)
T PRK13547 234 VAHGAPADVLT 244 (272)
T ss_pred EEecCHHHHcC
Confidence 88888777643
No 160
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.94 E-value=3.3e-28 Score=218.38 Aligned_cols=177 Identities=20% Similarity=0.244 Sum_probs=126.9
Q ss_pred EEEecCchhhhhhhh-----hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-
Q 023106 77 VVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~-----~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~- 149 (287)
||+++||++.|++.. ....+|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccc
Confidence 689999999996310 01238999999999999999999999999999999999999 9999 8999976421
Q ss_pred -----HhhhCCCCCCCChhH-----HHHHHHHHhcCCc----eee-----------ccCC--ccCCCCCCCceeccccce
Q 023106 150 -----AHARRGAPWTFNPLL-----LLNCLKNLRNQGS----VYA-----------PSFD--HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 -----~~~~~~~~~~~~~~~-----~~tv~e~l~~~~~----~~~-----------~~~~--~~~~~~~~~~LSgGekqR 202 (287)
...+..+.+.+|... ..++.+|+.+... ... ..+. ....++.+..|||||+||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qr 158 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR 158 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHH
Confidence 112334555555431 1567777643211 000 0011 112356889999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
|+| .+|++||||| .+++.|.++.+ .+|++|||++.+.. +++ |++++.|+++++
T Consensus 159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (265)
T TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQL 238 (265)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHH
Confidence 988 8999999999 35566665532 24799999999875 443 777788888776
Q ss_pred H
Q 023106 256 A 256 (287)
Q Consensus 256 ~ 256 (287)
.
T Consensus 239 ~ 239 (265)
T TIGR02769 239 L 239 (265)
T ss_pred c
Confidence 4
No 161
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.1e-27 Score=210.06 Aligned_cols=171 Identities=20% Similarity=0.267 Sum_probs=123.3
Q ss_pred EEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 78 i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
|+++|+++.|++ .. +++|+||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 3 l~~~~l~~~~~~~~~----~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 75 (229)
T cd03254 3 IEFENVNFSYDEKKP----VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKSL 75 (229)
T ss_pred EEEEEEEEecCCCCc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHHH
Confidence 789999999974 33 8999999999999999999999999999999999999 9999 88999776431 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-cc---------CC----------ccCCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-PS---------FD----------HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~~---------~~----------~~~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+.++...+ .++.+|+.+...... .. .. ....++.+.+|||||+|||.|
T Consensus 76 ~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~ 155 (229)
T cd03254 76 RSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAML 155 (229)
T ss_pred hhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHh
Confidence 3334555554332 488888876532110 00 00 001134578999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~ 255 (287)
.+|+++|||| .+++.+.++... +|++||+++++.. +++ |++++.|+.+++
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 224 (229)
T cd03254 156 RDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDEL 224 (229)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 8999999999 455555555332 4699999998854 332 565556655544
No 162
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.8e-28 Score=220.63 Aligned_cols=171 Identities=23% Similarity=0.320 Sum_probs=125.5
Q ss_pred EecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-------
Q 023106 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA------- 150 (287)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~------- 150 (287)
.++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++...
T Consensus 26 ~~~~~~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~ 98 (269)
T cd03294 26 SKEEILKKTGQTV----GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRE 98 (269)
T ss_pred hhhhhhhhcCCce----EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhhh
Confidence 5779999998876 8999999999999999999999999999999999999 9999 88999764321
Q ss_pred hhhCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 151 HARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.....+.+.+|...+ .++.+|+.+...... ..+. ....++.+.+|||||+|||+| .+
T Consensus 99 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 99 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVD 178 (269)
T ss_pred hhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 112334455554322 578888865321100 0010 012367889999999999988 99
Q ss_pred CCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|++||||| .+++.|.++.. .+|++|||++++.. +++ |++++.|+++++.
T Consensus 179 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999 45555555532 24699999998765 443 6777778877664
No 163
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.5e-28 Score=217.17 Aligned_cols=177 Identities=14% Similarity=0.133 Sum_probs=129.4
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~--- 149 (287)
++|+++||++.|+++. +|+|+||++.+|+++||+||||||||||+++|+|+++.. .|++| +.++|.++..
T Consensus 19 ~~l~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 19 IALSTKDLHVYYGKKE----AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred eEEEEeeEEEEECCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 3799999999997655 999999999999999999999999999999999998600 13789 8899976531
Q ss_pred --HhhhCCCCCCCChhHH--HHHHHHHhcCCceee-------c--------cCC-----ccCCCCCCCceeccccceEEE
Q 023106 150 --AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-------P--------SFD-----HGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-------~--------~~~-----~~~~~~~~~~LSgGekqRv~I 205 (287)
...+.++.+.+|...+ .++.+|+.++..... . .+. ....++.+.+|||||+||++|
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~l 174 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCI 174 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHH
Confidence 1223445555554332 588888876421100 0 000 012356789999999999988
Q ss_pred -----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+.+.|.++.. .+|++|||++++.. |++ |++++.|++.++.
T Consensus 175 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 175 ARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 8999999999 44555555533 24799999998865 444 7888888887764
No 164
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=4.3e-28 Score=209.94 Aligned_cols=157 Identities=14% Similarity=0.094 Sum_probs=114.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
||+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.....+..
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (207)
T PRK13539 2 MLEGEDLACVRGGRV----LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEA 74 (207)
T ss_pred EEEEEeEEEEECCeE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHhh
Confidence 699999999998755 8999999999999999999999999999999999999 9999 8899876421112222
Q ss_pred CCCCCChhH---HHHHHHHHhcCCceeec----------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-
Q 023106 156 APWTFNPLL---LLNCLKNLRNQGSVYAP----------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG- 215 (287)
Q Consensus 156 ~~~~~~~~~---~~tv~e~l~~~~~~~~~----------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE- 215 (287)
+.+.++... ..++.+|+.+....... .+. ....++.+.+|||||+||+.| .+|+++||||
T Consensus 75 ~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 154 (207)
T PRK13539 75 CHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEP 154 (207)
T ss_pred cEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 333332221 25777777543211100 000 012356788999999999988 8999999999
Q ss_pred ----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 216 ----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+++.|.++.+ ..+++|||.+++..
T Consensus 155 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 155 TAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 45555555432 24699999998865
No 165
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=4.2e-28 Score=209.46 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=115.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--Hhhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~ 153 (287)
||+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ....
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 1 MLEARNLACERDERI----LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred CeEEEEEEEEECCEE----EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHhh
Confidence 488999999998755 8999999999999999999999999999999999999 9999 8899876432 1112
Q ss_pred CCCCCCCChh---HHHHHHHHHhcCCceee-----------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 154 RGAPWTFNPL---LLLNCLKNLRNQGSVYA-----------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 154 ~~~~~~~~~~---~~~tv~e~l~~~~~~~~-----------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
..+.+.++.. ..+++.+|+.+...... ..+. ....++.+..|||||+||++| .+|+++||
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 153 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWIL 153 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2233333322 12578888765432110 0010 012367889999999999988 89999999
Q ss_pred ec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 214 DG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 214 DE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|| .+++.|.++.+ ..|++|||++++..
T Consensus 154 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 154 DEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence 99 44555555432 24799999998865
No 166
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.94 E-value=3.1e-28 Score=217.58 Aligned_cols=174 Identities=17% Similarity=0.282 Sum_probs=125.3
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC-----HHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD-----PKE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~-----~~~ 149 (287)
++|+++||++.|+++. +|+++||+|.+|+++||+|+||||||||+++|+|+++ |++| +.++|.+ +..
T Consensus 5 ~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 5 PLLSVRGLTKLYGPRK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQLRDLYA 77 (258)
T ss_pred ceEEEeeeEEEcCCce----eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCcccccccccc
Confidence 3799999999998755 8999999999999999999999999999999999999 9999 8899976 421
Q ss_pred ---Hh----hhCCCCCCCChhH-----HHHHHHHHhcC-----Cce----e------eccCCc--cCCCCCCCceecccc
Q 023106 150 ---AH----ARRGAPWTFNPLL-----LLNCLKNLRNQ-----GSV----Y------APSFDH--GVGDPVEDDILVGLQ 200 (287)
Q Consensus 150 ---~~----~~~~~~~~~~~~~-----~~tv~e~l~~~-----~~~----~------~~~~~~--~~~~~~~~~LSgGek 200 (287)
.. .+.++.+.++... ..++.+|+.+. ... . ...+.. ...++.+.+|||||+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQ 157 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence 11 1233455554431 13445554321 000 0 001111 123578899999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~ 253 (287)
|||+| .+|++||||| .+++.+.++.+ .+|++|||++++.. +++ |++++.|+++
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 237 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTD 237 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99988 8999999999 44555555433 24699999999975 443 7777888877
Q ss_pred HHH
Q 023106 254 DVA 256 (287)
Q Consensus 254 ~~~ 256 (287)
++.
T Consensus 238 ~~~ 240 (258)
T PRK11701 238 QVL 240 (258)
T ss_pred HHh
Confidence 764
No 167
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.94 E-value=5e-28 Score=210.06 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=114.9
Q ss_pred EEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------
Q 023106 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------ 149 (287)
Q Consensus 78 i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------ 149 (287)
|+++|+++.|++ .. +|+|+||++.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 l~~~~l~~~~~~~~~----~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYPNGTA----ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeCCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence 468899999964 34 8999999999999999999999999999999999999 9999 8899875421
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
...+..+.+.+|...+ .++.+|+.+...... ..+. ....++.+.+|||||+||++| .
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVN 153 (214)
T ss_pred HHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHc
Confidence 1123345555554432 578888875421100 0000 012356789999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+|+++|||| .+++.|.++.+ ..|++|||++.+..
T Consensus 154 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~ 201 (214)
T cd03292 154 SPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDT 201 (214)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 999999999 45555555532 24699999998864
No 168
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.94 E-value=5.2e-28 Score=215.90 Aligned_cols=173 Identities=17% Similarity=0.170 Sum_probs=127.5
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~ 153 (287)
|+++|+++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 2 l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 74 (256)
T TIGR03873 2 LRLSRVSWSAGGRL----IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRARA 74 (256)
T ss_pred ceEEeEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHHh
Confidence 67899999998765 9999999999999999999999999999999999999 9999 8999976532 1112
Q ss_pred CCCCCCCChhH---HHHHHHHHhcCCce----ee-c-------------cCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 154 RGAPWTFNPLL---LLNCLKNLRNQGSV----YA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 154 ~~~~~~~~~~~---~~tv~e~l~~~~~~----~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+.+.++... ..++.+|+.++... .. . .+. ....++.+..|||||+||++| .
T Consensus 75 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (256)
T TIGR03873 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQ 154 (256)
T ss_pred hheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 23444444332 26888888764210 00 0 000 012367889999999999998 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+|+++|||| .+.+.|.++.+ .+|++|||++.+.. |++ |++++.|+.+++..
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999 34555555432 24699999999965 444 78888888777643
No 169
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.94 E-value=5.8e-28 Score=211.83 Aligned_cols=161 Identities=20% Similarity=0.213 Sum_probs=115.7
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
++|+++||++.|++......+|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCEEcccCCHHH
Confidence 479999999999752111128999999999999999999999999999999999999 9999 8899875421
Q ss_pred H--hhhCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE----
Q 023106 150 A--HARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 150 ~--~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
. ....++.+.+|...+ .++.+|+.+...... ..+. ....++.+..|||||+||+.|
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al 161 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAF 161 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHH
Confidence 1 112344555554332 578888765321100 0011 012356789999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
.+|+++|||| .+++.|.++.. .+|++|||++++.
T Consensus 162 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 211 (228)
T PRK10584 162 NGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA 211 (228)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 8999999999 45555655432 2469999999764
No 170
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.94 E-value=1.9e-27 Score=201.15 Aligned_cols=138 Identities=16% Similarity=0.177 Sum_probs=107.0
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH--hhhC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--HARR 154 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--~~~~ 154 (287)
|+++|+++.|++.. ..+++++||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..+.
T Consensus 1 i~~~~~~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (178)
T cd03247 1 LSINNVSFSYPEQE--QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGVPVSDLEKALSS 75 (178)
T ss_pred CEEEEEEEEeCCCC--ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCEEHHHHHHHHHh
Confidence 46889999997641 128999999999999999999999999999999999999 9999 88999865432 1223
Q ss_pred CCCCCCChhHH--HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------c
Q 023106 155 GAPWTFNPLLL--LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------G 216 (287)
Q Consensus 155 ~~~~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~ 216 (287)
.+.+.++...+ .++.+|+ +..||+||+||+.| .+|+++|||| .
T Consensus 76 ~i~~~~q~~~~~~~tv~~~i-------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~ 136 (178)
T cd03247 76 LISVLNQRPYLFDTTLRNNL-------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQ 136 (178)
T ss_pred hEEEEccCCeeecccHHHhh-------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHH
Confidence 34444443321 4666665 67899999999988 9999999999 4
Q ss_pred hHHHHHhccCC--eEEEEcChHHHH
Q 023106 217 VWKDVSSMFDE--KWFIEVDLDTAM 239 (287)
Q Consensus 217 ~~~~l~~~~~~--~i~vtHd~~~~~ 239 (287)
+++.|.++... .+++|||++++.
T Consensus 137 l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 137 LLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHcCCCEEEEEecCHHHHH
Confidence 55555555332 469999999875
No 171
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.94 E-value=1.9e-28 Score=229.54 Aligned_cols=169 Identities=18% Similarity=0.246 Sum_probs=127.5
Q ss_pred cCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC----CHH-----HH
Q 023106 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ----DPK-----EA 150 (287)
Q Consensus 81 ~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~----~~~-----~~ 150 (287)
.++.+.|+... +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++| +.++|. ++. ..
T Consensus 28 ~~~~~~~g~~~----~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l 100 (382)
T TIGR03415 28 EEILDETGLVV----GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATL 100 (382)
T ss_pred HHHHHhhCCEE----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHHH
Confidence 45778888766 8999999999999999999999999999999999999 9999 899985 321 11
Q ss_pred --hhhCCCCCCCChhHH---HHHHHHHhcCCceeecc--------------CC-ccCCCCCCCceeccccceEEE-----
Q 023106 151 --HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 151 --~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
.++.++.+.||...+ .|+.+|+.++....... +. ....++++.+|||||+|||.|
T Consensus 101 ~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa 180 (382)
T TIGR03415 101 RRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFA 180 (382)
T ss_pred HHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 122456666665543 68999998753211000 00 113367899999999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++.+ ..||+|||++++.+ |++ |++++.|+++++.
T Consensus 181 ~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 181 MDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 8999999999 45555555533 25799999999876 444 7888899988875
No 172
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.6e-28 Score=213.89 Aligned_cols=171 Identities=20% Similarity=0.263 Sum_probs=125.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~ 154 (287)
||+++||++.|++. ..++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++... ....
T Consensus 1 ~l~~~~l~~~~~~~------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHHL------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred CeEEEEEEEEECCc------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhc
Confidence 48899999999753 238999999999999999999999999999999999 9999 89999865321 1123
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCceee--c------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVYA--P------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~~--~------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
.+.+.+|...+ +++.+|+.+...... . .+. ....++.+.+|||||+||+.| .+|+++
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 151 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPIL 151 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 34455554322 588899876421110 0 000 012367889999999999988 899999
Q ss_pred eEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 212 FLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|||| .+++.|.++.+ ..|++|||++++.. |++ |++++.|+++++.
T Consensus 152 lLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 152 LLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999 35556665532 24799999999865 443 7777788776664
No 173
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.5e-28 Score=220.11 Aligned_cols=176 Identities=18% Similarity=0.198 Sum_probs=130.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc---c-eeeCCCCHHH---
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---A-SSFDSQDPKE--- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~---G-i~~~g~~~~~--- 149 (287)
+|+++|+++.|++.. ..+|+++||+|.+|+++||+||||||||||+++|+|+++ |++ | +.++|.++..
T Consensus 5 ~l~i~~l~~~~~~~~--~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 5 IVEFKHVSFTYPDSK--KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred eEEEEEEEEEcCCCC--ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEECCcCCH
Confidence 699999999996421 128999999999999999999999999999999999998 886 8 8899976532
Q ss_pred HhhhCCCCCCCChhH----HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 150 AHARRGAPWTFNPLL----LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
...+..+++.+|... ..++.+|+.+...... . .+. ....++.+..|||||+||++|
T Consensus 80 ~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~ 159 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILA 159 (282)
T ss_pred HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 122334566666542 2588999876421110 0 000 112367899999999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|.++.. .+|++|||++++.. |++ |++++.|+++++..
T Consensus 160 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999 45566655542 24699999999854 443 78888888877643
No 174
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.1e-27 Score=230.74 Aligned_cols=178 Identities=20% Similarity=0.246 Sum_probs=136.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+|.|+.++ .+.+|+|+||+|++|+++|||||||+||||++++|..++. |++| |.+||.++.+. +.
T Consensus 465 ~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred eEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCeehhhcCHHHH
Confidence 599999999998875 5669999999999999999999999999999999999999 9999 99999987653 33
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-----------------ccCCcc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-----------------PSFDHG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-----------------~~~~~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
++.++.+-|.+-+ -++.|||.++..-.. ..+..+ .-.....+||||||||++|
T Consensus 541 r~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred HHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 4445555555544 689999998865110 011111 1124556899999999999
Q ss_pred ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|.+||||| .+-+.|.+..+ .+++|.|-+..+.. +++ |++++.|+-+++...
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~ 692 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSK 692 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhC
Confidence 9999999999 22333333333 25799999999988 444 888889988887654
No 175
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=6.1e-28 Score=197.60 Aligned_cols=157 Identities=18% Similarity=0.239 Sum_probs=119.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.++++++.+.-++.. +|+++||.+.+||+++|+||+|||||||+|+++-+.. |++| +.+.|+++... .+
T Consensus 3 lle~kq~~y~a~~a~----il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~vs~~~pea~ 75 (223)
T COG4619 3 LLELKQVGYLAGDAK----ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEAY 75 (223)
T ss_pred chHHHHHHhhcCCCe----eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC---CCCceEEEcCccccccChHHH
Confidence 567777776666665 9999999999999999999999999999999999999 9999 88999976432 23
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeeccCCc--------------cCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAPSFDH--------------GVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~~~~~--------------~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
++.+.+.-|.+.+ -||.+|+.|+..+....++. ...++.+.+|||||+||++| .-|++|
T Consensus 76 Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~IL 155 (223)
T COG4619 76 RQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKIL 155 (223)
T ss_pred HHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceE
Confidence 3445555555444 68999998876554333332 23467889999999999998 789999
Q ss_pred eEec-----------chHHHHHhcc-CC---eEEEEcChHHHHH
Q 023106 212 FLDG-----------GVWKDVSSMF-DE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~-~~---~i~vtHd~~~~~~ 240 (287)
|||| .+-+.|..++ ++ .+.||||.+.+.+
T Consensus 156 LLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~r 199 (223)
T COG4619 156 LLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIR 199 (223)
T ss_pred EecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhh
Confidence 9999 2233344444 22 4599999999776
No 176
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.1e-28 Score=216.64 Aligned_cols=173 Identities=13% Similarity=0.107 Sum_probs=123.3
Q ss_pred EEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
+|+++||++.|+ +.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.......
T Consensus 6 ~l~~~~l~~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWRNGHT----ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEecCCcE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHHhhccc
Confidence 599999999996 344 8999999999999999999999999999999999999 9999 889998764322222
Q ss_pred CCCCCCChhHH-----HHHHHHHhcCCce-----eec-------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 155 GAPWTFNPLLL-----LNCLKNLRNQGSV-----YAP-------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 155 ~~~~~~~~~~~-----~tv~e~l~~~~~~-----~~~-------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
.+.+.++...+ .++.+++.++... ... .+. ....++.+.+|||||+||++|
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~ 158 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA 158 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 34444443211 2345554332100 000 000 012367889999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH---HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi---gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+.+.|.++.+ .+|++|||++.+.. +++ |+++..|+++++.
T Consensus 159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~~G~i~~~g~~~~~~ 229 (272)
T PRK15056 159 QQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTF 229 (272)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHhcc
Confidence 8999999999 44555555533 24799999998876 433 7777788877753
No 177
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.94 E-value=5.4e-28 Score=234.55 Aligned_cols=175 Identities=11% Similarity=0.062 Sum_probs=124.8
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---H
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---A 150 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~ 150 (287)
|.||+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 1 m~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~~~~~~~~~~~~ 73 (490)
T PRK10938 1 MSSLQISQGTFRLSDTK----TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQSQFSHITRLSFE 73 (490)
T ss_pred CceEEEEeEEEEcCCee----ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEECCcccccCCHH
Confidence 34799999999998755 9999999999999999999999999999999999999 9999 8888765321 1
Q ss_pred hhhCCCCCCCChhH-----------HHHHHHHHhcCCce----e--eccCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 151 HARRGAPWTFNPLL-----------LLNCLKNLRNQGSV----Y--APSFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 151 ~~~~~~~~~~~~~~-----------~~tv~e~l~~~~~~----~--~~~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
..+..+++.+|... .+++.+++...... . ...+. ....++.+.+|||||||||+| .+
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSE 153 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 11112333333211 14566665432100 0 00111 123467899999999999998 89
Q ss_pred CCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|++||||| .+++.|.++.+ .+|++|||++.+.. +++ |+++..|+++++.
T Consensus 154 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 154 PDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999 45555655543 24799999999876 443 7777788777653
No 178
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.94 E-value=1.6e-27 Score=208.98 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=116.3
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hh
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AH 151 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~ 151 (287)
++|+++||++.|++.. +++|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 6 ~~i~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 6 PLLQLQNVGYLAGDAK----ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPEI 78 (225)
T ss_pred ceEEEeccEEeeCCce----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCHHH
Confidence 3799999999998765 9999999999999999999999999999999999999 9999 8899865421 11
Q ss_pred hhCCCCCCCChhHH--HHHHHHHhcCCceee------------ccCCc--cCCCCCCCceeccccceEEE-----ecCCE
Q 023106 152 ARRGAPWTFNPLLL--LNCLKNLRNQGSVYA------------PSFDH--GVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~------------~~~~~--~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
.+..+.+.+|...+ .++.+|+.+...... ..+.- ...++.+.+||+||+|||+| .+|++
T Consensus 79 ~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (225)
T PRK10247 79 YRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV 158 (225)
T ss_pred HHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 22344455554322 478888765311100 01111 12367889999999999998 89999
Q ss_pred EeEec-----------chHHHHHhccC----CeEEEEcChHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
+|||| .+.+.+.++.. .+|++|||++++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 159 LLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH
Confidence 99999 34455555432 2479999999874
No 179
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.1e-28 Score=218.98 Aligned_cols=178 Identities=16% Similarity=0.195 Sum_probs=127.9
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~-- 149 (287)
.++|+++||++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+.+.. .|++| +.++|.++..
T Consensus 37 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~ 112 (286)
T PRK14275 37 KPHVVAKNFSIYYGEFE----AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF 112 (286)
T ss_pred ceEEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcc
Confidence 45799999999997654 899999999999999999999999999999999985200 12889 8899976532
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceee-c--------------cCC-----ccCCCCCCCceeccccceEE
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-P--------------SFD-----HGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~--------------~~~-----~~~~~~~~~~LSgGekqRv~ 204 (287)
...+.++.+.+|...+ .++.+|+.++..... . .+. ....++.+..|||||+|||+
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 192 (286)
T PRK14275 113 TDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLC 192 (286)
T ss_pred cchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHH
Confidence 1123345555554322 378888875421100 0 000 01235678999999999998
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|++||||| .+++.|.++.. .+|++|||++++.. |++ |+++..|++.++.
T Consensus 193 LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 193 VARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 8 8999999999 44555555543 35799999999875 443 7777788877764
No 180
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.93 E-value=6.3e-28 Score=216.91 Aligned_cols=179 Identities=22% Similarity=0.262 Sum_probs=126.1
Q ss_pred ccEEEecCchhhhhhh-----hhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~-----~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~ 148 (287)
|++|+++||++.|++. .....+|+|+||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g~~~~ 77 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRGEPLA 77 (268)
T ss_pred CceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecc
Confidence 5689999999999730 001138999999999999999999999999999999999999 9999 889997642
Q ss_pred H------HhhhCCCCCCCChhH-----HHHHHHHHhcCCc----e-------------eeccCCccCCCCCCCceecccc
Q 023106 149 E------AHARRGAPWTFNPLL-----LLNCLKNLRNQGS----V-------------YAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 149 ~------~~~~~~~~~~~~~~~-----~~tv~e~l~~~~~----~-------------~~~~~~~~~~~~~~~~LSgGek 200 (287)
. ...+..+.+.+|... ..++.+++.+... . ....+.....++.+..||+||+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~ 157 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQL 157 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHH
Confidence 1 112334555555431 1355555432100 0 0001111234578899999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~ 253 (287)
||++| .+|++||||| .+++.|.++.+ ..|++|||++++.. +++ |++++.|++.
T Consensus 158 qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 237 (268)
T PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVG 237 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChh
Confidence 99988 9999999999 34555555542 24799999999875 443 7777888877
Q ss_pred HHH
Q 023106 254 DVA 256 (287)
Q Consensus 254 ~~~ 256 (287)
++.
T Consensus 238 ~~~ 240 (268)
T PRK10419 238 DKL 240 (268)
T ss_pred hcc
Confidence 754
No 181
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.3e-28 Score=241.33 Aligned_cols=178 Identities=16% Similarity=0.216 Sum_probs=131.3
Q ss_pred cEEEecCchhhhhhhh-------hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 76 PVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~-------~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
++|+++||++.|+... ....+|+|+||+|.+|+++||+|+||||||||+++|+|+++ |++| |.++|.++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEEEECCEEC
Confidence 5899999999996210 01238999999999999999999999999999999999999 9999 88999754
Q ss_pred HH-----H-hhhCCCCCCCChh--HH---HHHHHHHhcCCceee---------------ccCCc--cCCCCCCCceeccc
Q 023106 148 KE-----A-HARRGAPWTFNPL--LL---LNCLKNLRNQGSVYA---------------PSFDH--GVGDPVEDDILVGL 199 (287)
Q Consensus 148 ~~-----~-~~~~~~~~~~~~~--~~---~tv~e~l~~~~~~~~---------------~~~~~--~~~~~~~~~LSgGe 199 (287)
.. . ..+..+.+.+|.. .+ +++.+++.+...... ..+.- ...++++.+|||||
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGq 468 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQ 468 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHH
Confidence 21 1 1233466666653 12 577777764311100 01111 13468899999999
Q ss_pred cceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCc
Q 023106 200 QHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 200 kqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~ 252 (287)
||||+| .+|++||||| .+++.|.++.+ .+|+||||++++.. |++ |++++.|++
T Consensus 469 rQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~ 548 (623)
T PRK10261 469 RQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPR 548 (623)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 999998 8999999999 45566655533 25799999999986 544 888888988
Q ss_pred HHHH
Q 023106 253 PDVA 256 (287)
Q Consensus 253 ~~~~ 256 (287)
+++.
T Consensus 549 ~~i~ 552 (623)
T PRK10261 549 RAVF 552 (623)
T ss_pred HHHh
Confidence 8875
No 182
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.93 E-value=1.4e-27 Score=238.23 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=111.7
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
..+|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.+ |.++.
T Consensus 317 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~-~~~~~----- 383 (635)
T PRK11147 317 KIVFEMENVNYQIDGKQ----LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHC-GTKLE----- 383 (635)
T ss_pred CceEEEeeeEEEECCeE----EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEE-CCCcE-----
Confidence 34899999999998765 9999999999999999999999999999999999999 9999 666 55432
Q ss_pred CCCCCCCChh----HHHHHHHHHhcCCce---e-----------eccCCccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 154 RGAPWTFNPL----LLLNCLKNLRNQGSV---Y-----------APSFDHGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 154 ~~~~~~~~~~----~~~tv~e~l~~~~~~---~-----------~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
+++.+|.. ..+++.+++.+.... . ...+.....++.+..|||||||||+| .+|++
T Consensus 384 --i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~l 461 (635)
T PRK11147 384 --VAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNL 461 (635)
T ss_pred --EEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 22233321 115777777653210 0 00111123467889999999999988 89999
Q ss_pred EeEec-----------chHHHHHhccCCeEEEEcChHHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
||||| .+.+.+.++-..+|+||||++++..
T Consensus 462 LlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~ 502 (635)
T PRK11147 462 LILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDN 502 (635)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 99999 3344444442235799999999865
No 183
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.93 E-value=4.8e-28 Score=214.11 Aligned_cols=171 Identities=18% Similarity=0.155 Sum_probs=119.0
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCcc-eeeCCCCHHH----H
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll--~~~~p~~G-i~~~g~~~~~----~ 150 (287)
|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|++ + |++| +.++|.++.. .
T Consensus 1 l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR01978 1 LKIKDLHVSVEDKE----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE---VTSGTILFKGQDLLELEPDE 73 (243)
T ss_pred CeEeeEEEEECCEE----EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCcceEEECCEecCCCCHHH
Confidence 47899999998655 899999999999999999999999999999999994 6 8999 8999976422 1
Q ss_pred hhhCCCCCCCChhHH---HHHHHHHhcCCce----------eec-------------cCCccCCCCCCC-ceeccccceE
Q 023106 151 HARRGAPWTFNPLLL---LNCLKNLRNQGSV----------YAP-------------SFDHGVGDPVED-DILVGLQHKV 203 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~----------~~~-------------~~~~~~~~~~~~-~LSgGekqRv 203 (287)
..+.++.+.+|...+ .++.+++.+.... ... .......++.+. .|||||+|||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl 153 (243)
T TIGR01978 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRN 153 (243)
T ss_pred hhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHH
Confidence 122334444444322 4566665432110 000 001112345565 5999999999
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH----HHH----HHHhcCCCcHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPPDV 255 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~----rvi----gr~i~~G~~~~~ 255 (287)
+| .+|+++|||| .+++.|.++.+ .+|++|||++++.. +++ |++++.|+++++
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 88 8999999999 45566665542 24799999998864 332 666667776543
No 184
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.2e-27 Score=214.67 Aligned_cols=177 Identities=13% Similarity=0.184 Sum_probs=126.0
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~--- 149 (287)
++|+++||++.|++.. +|+|+||+|.+|+++||+|+||||||||+++|+|++... .|++| +.++|.++..
T Consensus 9 ~~l~i~~v~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 9 TVLRTENLNVYYGSFL----AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred eEEEEeeeEEEECCEE----EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 3799999999998655 899999999999999999999999999999999997510 12689 8899976421
Q ss_pred --HhhhCCCCCCCChhHH--HHHHHHHhcCCceee--cc-----------CC-----ccCCCCCCCceeccccceEEE--
Q 023106 150 --AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA--PS-----------FD-----HGVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--~~-----------~~-----~~~~~~~~~~LSgGekqRv~I-- 205 (287)
...+..+.+.+|...+ .++.+|+.++..... .. .. ....++.+.+|||||+||++|
T Consensus 85 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lar 164 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIAR 164 (264)
T ss_pred ChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHH
Confidence 1122334455554221 478888876432110 00 00 012356788999999999988
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH-------------HHHhcCCCcH
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL-------------KRHISTGKPP 253 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi-------------gr~i~~G~~~ 253 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|++.
T Consensus 165 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~ 244 (264)
T PRK14243 165 AIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTE 244 (264)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHH
Confidence 8999999999 34555555433 35799999999886 332 5667778777
Q ss_pred HHH
Q 023106 254 DVA 256 (287)
Q Consensus 254 ~~~ 256 (287)
++.
T Consensus 245 ~~~ 247 (264)
T PRK14243 245 KIF 247 (264)
T ss_pred HHH
Confidence 774
No 185
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.1e-27 Score=227.51 Aligned_cols=170 Identities=21% Similarity=0.255 Sum_probs=137.3
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
+++++++|++|+|++.. +|++|||++.+||++||+|.||||||||+|+|+|.++ |++| |.++|+.+..
T Consensus 6 ~~ll~~~~i~K~FggV~----AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 6 PPLLELRGISKSFGGVK----ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred cceeeeecceEEcCCce----eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCCCHH
Confidence 45899999999999987 9999999999999999999999999999999999999 9999 9999986532
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceeec--cCCc-----------------cCCCCCCCceeccccceEEE--
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP--SFDH-----------------GVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~--~~~~-----------------~~~~~~~~~LSgGekqRv~I-- 205 (287)
.....|+..++|...+ ++|.||+.++.....+ ..+. ...+..+..||+||||-|.|
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHH
Confidence 2345677777877665 8999999887654321 1110 11467888999999999999
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCC
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~ 251 (287)
.+++++|||| .+++.++++.+. +|||||.++++.+ |+. |+.+..++
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 8899999999 567777777665 4699999999997 443 66665444
No 186
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8e-28 Score=217.17 Aligned_cols=175 Identities=16% Similarity=0.187 Sum_probs=127.0
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPKE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~~ 149 (287)
++|+++||++.|++.. +|+|+||+|++|+++||+|+||||||||+++|+|+++ | ++| +.++|.++..
T Consensus 20 ~~l~i~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~ 92 (276)
T PRK14271 20 PAMAAVNLTLGFAGKT----VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSGYRYSGDVLLGGRSIFN 92 (276)
T ss_pred cEEEEeeEEEEECCEE----EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cCCCCCCceEEEECCEEccc
Confidence 4799999999998765 8999999999999999999999999999999999987 6 588 8899875421
Q ss_pred ----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee--c-------------cCCc-----cCCCCCCCceeccccceE
Q 023106 150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA--P-------------SFDH-----GVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--~-------------~~~~-----~~~~~~~~~LSgGekqRv 203 (287)
...+..+.+.+|...+ .++.+|+.+...... . .+.- ...++.+.+|||||+||+
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 93 YRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred cchhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 1122334455544321 578888865321100 0 0100 012456889999999999
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+| .+|+++|||| .+.+.|.++.+ .+|++|||++++.. |++ |+++..|++.++..
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 98 8999999999 34455554433 35799999998876 444 77778888877643
No 187
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.5e-28 Score=218.21 Aligned_cols=174 Identities=17% Similarity=0.232 Sum_probs=128.4
Q ss_pred cEEEecCchhhhh--hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~--~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--- 149 (287)
++|+++|+++.|+ +.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 6 ~~l~~~nl~~~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~ 78 (271)
T PRK13632 6 VMIKVENVSFSYPNSENN----ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKENL 78 (271)
T ss_pred eEEEEEeEEEEcCCCCcc----ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcCCH
Confidence 3799999999995 333 8999999999999999999999999999999999999 9999 8999976532
Q ss_pred HhhhCCCCCCCChhH----HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 150 AHARRGAPWTFNPLL----LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
...+..+.+.+|... ..++.+|+.+...... . .+. ....++.+..|||||+||++|
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred HHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 122334566666542 2689999876421110 0 000 012367889999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++.+ .+|++|||++.+.. +++ |+++..|++.++.
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHh
Confidence 8999999999 45566665532 24699999998753 332 6666677776654
No 188
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.5e-28 Score=214.16 Aligned_cols=176 Identities=16% Similarity=0.198 Sum_probs=125.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCcc-eeeCCCCHHH----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~--~~p~~G-i~~~g~~~~~---- 149 (287)
+|+++|+++.|+... +|+++||+|.+|+++||+|+||||||||+++|+|+++. ..|++| +.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~ 79 (251)
T PRK14251 4 IISAKDVHLSYGNYE----ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79 (251)
T ss_pred eEEEEeeEEEECCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccch
Confidence 699999999998655 99999999999999999999999999999999999851 012688 8899976421
Q ss_pred -HhhhCCCCCCCChhHH--HHHHHHHhcCCceee---c------------cCCc-----cCCCCCCCceeccccceEEE-
Q 023106 150 -AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---P------------SFDH-----GVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---~------------~~~~-----~~~~~~~~~LSgGekqRv~I- 205 (287)
...+.++.+.+|...+ .++.+|+.+...... . .+.- ...++.+.+|||||+||++|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 159 (251)
T PRK14251 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIA 159 (251)
T ss_pred HHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHH
Confidence 1123344444444322 477888765321100 0 0010 11356788999999999988
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+++.|.++.. .+|++|||++++.. |++ |+++..|+++++.
T Consensus 160 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 160 RALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 8999999999 34555555433 35799999999765 443 7777778776653
No 189
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9.3e-28 Score=213.64 Aligned_cols=173 Identities=13% Similarity=0.167 Sum_probs=127.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----cc-eeeCCCCHHH-
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KA-SSFDSQDPKE- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~-----~G-i~~~g~~~~~- 149 (287)
+|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |+ +| +.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~----il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~~ 76 (251)
T PRK14249 4 KIKIRGVNFFYHKHQ----VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENIYSP 76 (251)
T ss_pred eEEEEEEEEEECCee----EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEcccc
Confidence 699999999998655 8999999999999999999999999999999999998 76 58 8899876531
Q ss_pred ----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee-c-------c-------CC-----ccCCCCCCCceeccccceE
Q 023106 150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-P-------S-------FD-----HGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~-------~-------~~-----~~~~~~~~~~LSgGekqRv 203 (287)
...+..+.+.+|...+ .++.+|+.+...... . . +. ....++.+..|||||+|||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv 156 (251)
T PRK14249 77 NLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRL 156 (251)
T ss_pred ccChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHH
Confidence 1223345555554322 478888876422110 0 0 00 0123577889999999999
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+| .+|+++|||| .+++.|.++.. .+|++|||++++.. +++ |++++.|++.++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 157 CIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 88 8999999999 34455555432 24799999999876 443 6777788777663
No 190
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3.6e-27 Score=198.26 Aligned_cols=135 Identities=20% Similarity=0.273 Sum_probs=103.8
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~~ 153 (287)
|+++|+++.|++.. ..+++++||++++|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..+
T Consensus 1 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (171)
T cd03228 1 IEFKNVSFSYPGRP--KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESLR 75 (171)
T ss_pred CEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHHH
Confidence 46889999997641 128999999999999999999999999999999999999 9999 88999765321 112
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG----------- 215 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE----------- 215 (287)
..+.+.++...+ .++.+|+ ||+||+|||.| .+|+++||||
T Consensus 76 ~~i~~~~~~~~~~~~t~~e~l----------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~ 133 (171)
T cd03228 76 KNIAYVPQDPFLFSGTIRENI----------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEA 133 (171)
T ss_pred hhEEEEcCCchhccchHHHHh----------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHH
Confidence 234444443322 3566665 99999999988 8999999999
Q ss_pred chHHHHHhccCC--eEEEEcChHHHH
Q 023106 216 GVWKDVSSMFDE--KWFIEVDLDTAM 239 (287)
Q Consensus 216 ~~~~~l~~~~~~--~i~vtHd~~~~~ 239 (287)
.+++.+.++.+. .+++|||++++.
T Consensus 134 ~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 134 LILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 445555555432 469999999875
No 191
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.93 E-value=5.3e-28 Score=215.36 Aligned_cols=174 Identities=17% Similarity=0.283 Sum_probs=123.9
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC-----HHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD-----PKE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~-----~~~ 149 (287)
++|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.+ +..
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGK----GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELYQ 74 (253)
T ss_pred ceEEEeeeEEEeCCce----EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccccccccccc
Confidence 3699999999998755 8999999999999999999999999999999999999 9999 8888865 321
Q ss_pred ---H-h---hhCCCCCCCChhH-----HHHHHHHHhcC-----Ccee----------eccCC--ccCCCCCCCceecccc
Q 023106 150 ---A-H---ARRGAPWTFNPLL-----LLNCLKNLRNQ-----GSVY----------APSFD--HGVGDPVEDDILVGLQ 200 (287)
Q Consensus 150 ---~-~---~~~~~~~~~~~~~-----~~tv~e~l~~~-----~~~~----------~~~~~--~~~~~~~~~~LSgGek 200 (287)
. . ...++.+.+|... ..++.+|+.+. .... ...+. ....++.+..|||||+
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence 1 1 1233445444421 13445554321 0000 00111 1234568899999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~ 253 (287)
|||+| .+|++||||| .+++.+.++.+ .+|++|||++++.. +++ |++++.|+++
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~ 234 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTD 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHH
Confidence 99998 8999999999 44555555432 24799999999875 433 7777778776
Q ss_pred HHH
Q 023106 254 DVA 256 (287)
Q Consensus 254 ~~~ 256 (287)
++.
T Consensus 235 ~~~ 237 (253)
T TIGR02323 235 QVL 237 (253)
T ss_pred HHh
Confidence 664
No 192
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.93 E-value=3.5e-28 Score=226.77 Aligned_cols=166 Identities=16% Similarity=0.236 Sum_probs=123.9
Q ss_pred CchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-------hhh
Q 023106 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-------HAR 153 (287)
Q Consensus 82 ~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-------~~~ 153 (287)
||+|.|++.. + ++||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..+
T Consensus 4 ~l~~~~~~~~-----~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~ 74 (354)
T TIGR02142 4 RFSKRLGDFS-----L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEK 74 (354)
T ss_pred EEEEEECCEE-----E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchhh
Confidence 7899997643 4 8999999999999999999999999999999999 9999 88999765321 123
Q ss_pred CCCCCCCChhHH---HHHHHHHhcCCceeec------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 154 RGAPWTFNPLLL---LNCLKNLRNQGSVYAP------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 154 ~~~~~~~~~~~~---~tv~e~l~~~~~~~~~------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
..+.+.+|...+ +++.+|+.++...... .+. ....++.+.+|||||||||+| .+|++||
T Consensus 75 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lll 154 (354)
T TIGR02142 75 RRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL 154 (354)
T ss_pred CCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 345555655432 6899999875321100 000 112367889999999999998 8999999
Q ss_pred Eec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 213 LDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
||| .+++.|.++.. .+|++|||++++.. +++ |+++..|+++++.
T Consensus 155 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 155 MDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 999 45566666543 24799999999875 443 7777888887764
No 193
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8.9e-28 Score=213.86 Aligned_cols=176 Identities=13% Similarity=0.159 Sum_probs=125.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCcc-eeeCCCCHHH----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~--~~p~~G-i~~~g~~~~~---- 149 (287)
.|+++|+++.|++.. +|+|+||+|.+|+++||+|+||||||||+++|+|+++. ..|++| +.++|.++..
T Consensus 4 ~l~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 4 KVKLEQLNVHFGKNH----AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred EEEEEEEEEEeCCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 689999999998655 99999999999999999999999999999999999741 012578 8999976531
Q ss_pred -HhhhCCCCCCCChhH---HHHHHHHHhcCCceee-c--------------cCCc-----cCCCCCCCceeccccceEEE
Q 023106 150 -AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYA-P--------------SFDH-----GVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~--------------~~~~-----~~~~~~~~~LSgGekqRv~I 205 (287)
...+..+.+.+|... ..++.+|+.+...... . .+.- ...+..+.+|||||+||++|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 159 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCI 159 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHH
Confidence 122334445555432 2577888865321100 0 0000 11245788999999999988
Q ss_pred -----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 160 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 160 ARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 8999999999 34445554433 35799999999875 443 7777788877764
No 194
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.4e-28 Score=239.62 Aligned_cols=179 Identities=15% Similarity=0.204 Sum_probs=130.5
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH------
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP------ 147 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~------ 147 (287)
+++|+++||++.|+.......+|+||||+|.+|+++||+|+||||||||+++|+|+++ |++| +.++|..+
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKMLLRRRSRQ 86 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEEecccccc
Confidence 5589999999999642112238999999999999999999999999999999999999 9999 77776421
Q ss_pred ---------HHH-h-hhCCCCCCCChh-----HHHHHHHHHhcCCcee----e-----------ccCCc----cCCCCCC
Q 023106 148 ---------KEA-H-ARRGAPWTFNPL-----LLLNCLKNLRNQGSVY----A-----------PSFDH----GVGDPVE 192 (287)
Q Consensus 148 ---------~~~-~-~~~~~~~~~~~~-----~~~tv~e~l~~~~~~~----~-----------~~~~~----~~~~~~~ 192 (287)
... . +...+++++|.+ ..+++.+|+.++.... . ..+.- ...++++
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 166 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP 166 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCC
Confidence 011 1 123466666653 1268888887542110 0 00111 1236789
Q ss_pred CceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HH
Q 023106 193 DDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KR 245 (287)
Q Consensus 193 ~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr 245 (287)
.+|||||||||+| .+|++||||| .+++.++++.+ .+|+||||++++.. |++ |+
T Consensus 167 ~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 9999999999998 8999999999 45666666542 24799999999876 444 78
Q ss_pred HhcCCCcHHHH
Q 023106 246 HISTGKPPDVA 256 (287)
Q Consensus 246 ~i~~G~~~~~~ 256 (287)
+++.|++.++.
T Consensus 247 i~~~g~~~~~~ 257 (623)
T PRK10261 247 AVETGSVEQIF 257 (623)
T ss_pred ecccCCHHHhh
Confidence 88888887764
No 195
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.93 E-value=6.7e-28 Score=206.79 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=110.3
Q ss_pred EEEecCchhhhhhhh--hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCcc-eeeCCCCHHHHh
Q 023106 77 VVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKA-SSFDSQDPKEAH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~--~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll--~~~~p~~G-i~~~g~~~~~~~ 151 (287)
.|+++||++.|++.. ....+|+++||++++|++++|+||||||||||+++|+|++ + |++| +.++|+++....
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL---GVSGEVLINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEeCchHh
Confidence 488999999997510 0012899999999999999999999999999999999999 8 9999 899998764322
Q ss_pred hhCCCCCCCChhH---HHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec--------
Q 023106 152 ARRGAPWTFNPLL---LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-------- 215 (287)
Q Consensus 152 ~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-------- 215 (287)
.+..+.+.++... .+++.+|+.+.... ..||+||+||+.| .+|+++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~--------------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~ 145 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAKL--------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHHh--------------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHH
Confidence 2333445555432 26888888653211 1799999999988 8999999999
Q ss_pred ---chHHHHHhccC---CeEEEEcChH-HHH
Q 023106 216 ---GVWKDVSSMFD---EKWFIEVDLD-TAM 239 (287)
Q Consensus 216 ---~~~~~l~~~~~---~~i~vtHd~~-~~~ 239 (287)
.+++.|.++.+ ..|++|||++ .+.
T Consensus 146 ~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 176 (194)
T cd03213 146 SALQVMSLLRRLADTGRTIICSIHQPSSEIF 176 (194)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCchHHHH
Confidence 44555555433 2469999996 444
No 196
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.93 E-value=2.8e-27 Score=208.75 Aligned_cols=175 Identities=17% Similarity=0.196 Sum_probs=124.8
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~ 153 (287)
|+++|+++.|++.. ...+|+|+||++++|+++||+|+||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 1 l~i~~l~~~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 76 (238)
T cd03249 1 IEFKNVSFRYPSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLRWLR 76 (238)
T ss_pred CeEEEEEEecCCCC-CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHHHHH
Confidence 46899999996421 1238999999999999999999999999999999999999 9999 8999976532 1122
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceee-c---------cCC----------ccCCCCCCCceeccccceEEE-----e
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYA-P---------SFD----------HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~---------~~~----------~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+.+.++...+ .++.+|+.+...... . ... ....++.+.+|||||+|||.| .
T Consensus 77 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~ 156 (238)
T cd03249 77 SQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR 156 (238)
T ss_pred hhEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhc
Confidence 335555554332 588898876422110 0 000 001245678999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
+|+++|||| .+++.|.++... +|++|||++++.. +++ |++++.|+.+++.
T Consensus 157 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (238)
T cd03249 157 NPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELM 225 (238)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999 455666555432 4699999998854 333 6766677766553
No 197
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1e-27 Score=213.63 Aligned_cols=176 Identities=14% Similarity=0.168 Sum_probs=126.8
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---Ccc-eeeCCCCHHH--
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKA-SSFDSQDPKE-- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p---~~G-i~~~g~~~~~-- 149 (287)
++|+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|++.. .| ++| +.++|.++..
T Consensus 5 ~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~~ 79 (253)
T PRK14261 5 IILSTKNLNLWYGEKH----ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL-IPGCRITGDILYNGENIMDSG 79 (253)
T ss_pred ceEEEeeeEEEECCee----eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC-CCCCCcceEEEECCEEccccc
Confidence 4799999999998765 99999999999999999999999999999999998750 02 479 8899976532
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceeec---------------cCC-----ccCCCCCCCceeccccceEE
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYAP---------------SFD-----HGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~---------------~~~-----~~~~~~~~~~LSgGekqRv~ 204 (287)
...+.++.+.+|...+ .++.+|+.+....... .+. ....++.+..||+||+||++
T Consensus 80 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14261 80 ADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC 159 (253)
T ss_pred cchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH
Confidence 1223345555554322 4888888764321100 000 01135678899999999998
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|+++|||| .+.+.|.++.+ .+|++|||++++.. +++ |+++..|+++++.
T Consensus 160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 8 8999999999 34455554433 35799999999875 443 7777788877663
No 198
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.93 E-value=1.8e-27 Score=205.43 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=112.7
Q ss_pred ecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH---H----Hh
Q 023106 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK---E----AH 151 (287)
Q Consensus 80 ~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~---~----~~ 151 (287)
++||++.|++.. +|+++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++. . ..
T Consensus 1 i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~ 73 (206)
T TIGR03608 1 LKNISKKFGDKI----ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASKF 73 (206)
T ss_pred CcceEEEECCEE----EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHHH
Confidence 478999998655 9999999999999999999999999999999999999 9999 899998632 1 12
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
.++++.+.++...+ .++.+|+.+...... ..+. ....++.+.+||+||+||++| .+|
T Consensus 74 ~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p 153 (206)
T TIGR03608 74 RREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDP 153 (206)
T ss_pred HHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 23445555555432 588888875321100 0000 112367889999999999988 899
Q ss_pred CEEeEec-----------chHHHHHhccC---CeEEEEcChHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
+++|||| .+++.|.++.+ ..|++||+++..
T Consensus 154 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 197 (206)
T TIGR03608 154 PLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA 197 (206)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999999 45555555432 246999999864
No 199
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.6e-27 Score=201.66 Aligned_cols=137 Identities=27% Similarity=0.387 Sum_probs=105.5
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----Hh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----AH 151 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~~ 151 (287)
|+++|+++.|++.. +++++||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 1 i~~~~l~~~~~~~~----~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (178)
T cd03229 1 LELKNVSKRYGQKT----VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPP 73 (178)
T ss_pred CEEEEEEEEECCeE----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccchhHHH
Confidence 46889999997654 8999999999999999999999999999999999999 9999 8899875422 12
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec--------
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-------- 215 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-------- 215 (287)
.+..+.+.++...+ .++.+|+.+. ||+||+||++| .+|++++|||
T Consensus 74 ~~~~i~~~~q~~~~~~~~t~~~~l~~~-------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~ 134 (178)
T cd03229 74 LRRRIGMVFQDFALFPHLTVLENIALG-------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPI 134 (178)
T ss_pred HhhcEEEEecCCccCCCCCHHHheeec-------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHH
Confidence 22334444443221 4666665432 99999999988 8999999999
Q ss_pred ---chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 216 ---GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ---~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.+++.|.++.+ ..+++|||++++..
T Consensus 135 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 135 TRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 44555555543 24699999998763
No 200
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=8.2e-28 Score=216.24 Aligned_cols=177 Identities=17% Similarity=0.177 Sum_probs=128.4
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hh
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AH 151 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~ 151 (287)
++|+++|+++.|++.. ..+|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 6 ~~l~i~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 6 SIIVFKNVSFQYQSDA--SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDDNFEK 80 (269)
T ss_pred ceEEEEEEEEEcCCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHH
Confidence 4799999999997521 128999999999999999999999999999999999999 9999 9999976522 12
Q ss_pred hhCCCCCCCChhH----HHHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 152 ARRGAPWTFNPLL----LLNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 152 ~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.+..+.+.+|... ..++.+|+.+...... ..+. ....++.+..||+||+||++| .+
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 160 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALN 160 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 2334555665532 1456676655321100 0000 112356889999999999988 89
Q ss_pred CCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
|+++|||| .+++.|.++.+ ..|++||+++++.. |++ |++++.|+++++..
T Consensus 161 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 161 PSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999 45556665532 24699999998865 443 77778888877643
No 201
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.9e-27 Score=214.48 Aligned_cols=178 Identities=15% Similarity=0.159 Sum_probs=127.5
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~-- 149 (287)
.++|+++||++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|++... .|++| +.++|.++..
T Consensus 18 ~~~l~~~nl~~~~~~~~----~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 18 HSVFEVEGVKVFYGGFL----ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred CceEEEeeEEEEeCCeE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 45899999999998755 899999999999999999999999999999999998510 01578 8899976521
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceee-------------ccCC-----ccCCCCCCCceeccccceEEE-
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-------------PSFD-----HGVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-------------~~~~-----~~~~~~~~~~LSgGekqRv~I- 205 (287)
...+.++.+.+|...+ .++.+|+.++..... ..+. ....++.+.+|||||+|||+|
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 173 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA 173 (274)
T ss_pred chhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence 1223345555554322 377888865421100 0000 012356789999999999998
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HH-------------HHHHhcCCCc
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RV-------------LKRHISTGKP 252 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rv-------------igr~i~~G~~ 252 (287)
.+|++||||| .+++.|.++.+. +|++|||++++.. |+ -|++++.|++
T Consensus 174 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 174 RAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCH
Confidence 8999999999 455555555432 5799999999976 22 1566777888
Q ss_pred HHHH
Q 023106 253 PDVA 256 (287)
Q Consensus 253 ~~~~ 256 (287)
.++.
T Consensus 254 ~~~~ 257 (274)
T PRK14265 254 EQMF 257 (274)
T ss_pred HHHH
Confidence 7774
No 202
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.7e-27 Score=200.55 Aligned_cols=135 Identities=24% Similarity=0.379 Sum_probs=106.4
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--HhhhC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHARR 154 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~~ 154 (287)
|+++|+++.|++.. +|+++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ...+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (173)
T cd03230 1 IEVRNLSKRYGKKT----ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEPEEVKR 73 (173)
T ss_pred CEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccchHhhhc
Confidence 46889999997654 8999999999999999999999999999999999999 9999 8899875432 12223
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG----------- 215 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE----------- 215 (287)
.+.+.+|...+ .++.+|+. ||+||+||+.| .+|+++||||
T Consensus 74 ~i~~~~q~~~~~~~~tv~~~~~---------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~ 132 (173)
T cd03230 74 RIGYLPEEPSLYENLTVRENLK---------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRR 132 (173)
T ss_pred cEEEEecCCccccCCcHHHHhh---------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 34555554322 47777763 99999999988 8999999999
Q ss_pred chHHHHHhccCC---eEEEEcChHHHHH
Q 023106 216 GVWKDVSSMFDE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ~~~~~l~~~~~~---~i~vtHd~~~~~~ 240 (287)
.+++.|.++.+. .+++|||.+++..
T Consensus 133 ~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 133 EFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 455666665432 4699999998764
No 203
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=2.1e-27 Score=204.57 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=115.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--Hhhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~ 153 (287)
||+++|+++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 1 ml~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 1 MLDVIELDFDYHDQP----LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred CEEEEEEEEEeCCee----EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHH
Confidence 488999999998755 9999999999999999999999999999999999999 9999 9999986532 1222
Q ss_pred CCCCCCCChhH---HHHHHHHHhcCCceee---------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec
Q 023106 154 RGAPWTFNPLL---LLNCLKNLRNQGSVYA---------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG 215 (287)
Q Consensus 154 ~~~~~~~~~~~---~~tv~e~l~~~~~~~~---------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE 215 (287)
..+.+.++... ..++.+|+.+...... ..+. ....++.+..||+||+||++| .+|+++||||
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDE 153 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDE 153 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 33444443322 2678888776421100 0011 112356778999999999988 8999999999
Q ss_pred -----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 216 -----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 -----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+++.|.++.+ ..|++||+.+.+..
T Consensus 154 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 154 PLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK 192 (200)
T ss_pred CCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc
Confidence 44555555422 24699999887643
No 204
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8.6e-28 Score=213.90 Aligned_cols=176 Identities=16% Similarity=0.185 Sum_probs=124.8
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---Ccc-eeeCCCCHHH--
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKA-SSFDSQDPKE-- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p---~~G-i~~~g~~~~~-- 149 (287)
+||+++||++.|++.. +|+++||+|.+|+++||+|+||||||||+++|+|+++. .| ++| |.++|.++..
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFYGKFE----ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL-IPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEECCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-CCCCCcccEEEEcCEEccccc
Confidence 4799999999998654 89999999999999999999999999999999998630 03 488 8899976521
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceee---c------------cCC-----ccCCCCCCCceeccccceEE
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---P------------SFD-----HGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---~------------~~~-----~~~~~~~~~~LSgGekqRv~ 204 (287)
...+.++.+.+|...+ .++.+|+.+...... . ... ....++.+.+||+||+||++
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~ 158 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC 158 (252)
T ss_pred ccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH
Confidence 1222344455544321 477777764311000 0 000 01235678899999999999
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|+++|||| .+.+.|.++.+ .+|++|||++++.. |++ |++++.|++.++.
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 159 IARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 8 8999999999 34455555433 35799999999875 443 6777778777664
No 205
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.93 E-value=1.6e-27 Score=212.30 Aligned_cols=166 Identities=20% Similarity=0.265 Sum_probs=118.9
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
++|+++||++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|..
T Consensus 3 ~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~~~-------- 67 (251)
T PRK09544 3 SLVSLENVSVSFGQRR----VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNGKL-------- 67 (251)
T ss_pred cEEEEeceEEEECCce----EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCcc--------
Confidence 3799999999998755 8999999999999999999999999999999999999 9999 8777631
Q ss_pred CCCCCCChhH----H-HHHHHHHhcCCceee-------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-
Q 023106 155 GAPWTFNPLL----L-LNCLKNLRNQGSVYA-------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG- 215 (287)
Q Consensus 155 ~~~~~~~~~~----~-~tv~e~l~~~~~~~~-------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE- 215 (287)
.+.+.+|... + .++.+++.+...... ..+. ....++.+..|||||+|||+| .+|+++||||
T Consensus 68 ~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 147 (251)
T PRK09544 68 RIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEP 147 (251)
T ss_pred CEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1222222211 0 355555543211100 0011 112356789999999999988 8999999999
Q ss_pred ----------chHHHHHhccC----CeEEEEcChHHHHH---HHH---HHHhcCCCcHHHH
Q 023106 216 ----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 256 (287)
Q Consensus 216 ----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi---gr~i~~G~~~~~~ 256 (287)
.+++.|.++.. .+|++|||++++.. +++ ++++..|++.++.
T Consensus 148 t~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~~i~~~g~~~~~~ 208 (251)
T PRK09544 148 TQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVS 208 (251)
T ss_pred CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECCceEeeCCHHHHh
Confidence 44555555432 24699999999876 433 5666778877664
No 206
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.93 E-value=1.4e-26 Score=202.88 Aligned_cols=160 Identities=17% Similarity=0.162 Sum_probs=118.1
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---h
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---H 151 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~ 151 (287)
++|+++|+++.|++.. ...+|+++||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++... .
T Consensus 10 ~~l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 85 (226)
T cd03248 10 GIVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPISQYEHKY 85 (226)
T ss_pred ceEEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchHHcCHHH
Confidence 4799999999997521 1128999999999999999999999999999999999999 9999 89999875431 2
Q ss_pred hhCCCCCCCChhHH--HHHHHHHhcCCceee-----------------ccCC---ccCCCCCCCceeccccceEEE----
Q 023106 152 ARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-----------------PSFD---HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-----------------~~~~---~~~~~~~~~~LSgGekqRv~I---- 205 (287)
.+..+.+.++...+ .++.+|+.+...... ..+. ....++.+.+|||||+|||+|
T Consensus 86 ~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral 165 (226)
T cd03248 86 LHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL 165 (226)
T ss_pred HHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 22335555554332 588888875422100 0010 112356789999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAM 239 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~ 239 (287)
.+|+++|||| .+++.+.++.+. .|++|||++++.
T Consensus 166 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 213 (226)
T cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE 213 (226)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 8999999999 345556555432 469999999884
No 207
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.93 E-value=3.3e-27 Score=198.83 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=103.1
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~ 153 (287)
|+++|+++.|++.. ..+++++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (173)
T cd03246 1 LEVENVSFRYPGAE--PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELG 75 (173)
T ss_pred CEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHH
Confidence 46899999997521 128999999999999999999999999999999999999 9999 8899876432 1122
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG----------- 215 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE----------- 215 (287)
..+.+.+|...+ .++.+|+ |||||+||++| .+|+++||||
T Consensus 76 ~~i~~~~q~~~~~~~tv~~~l----------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~ 133 (173)
T cd03246 76 DHVGYLPQDDELFSGSIAENI----------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGER 133 (173)
T ss_pred hheEEECCCCccccCcHHHHC----------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHH
Confidence 334445544321 3566664 99999999988 8999999999
Q ss_pred chHHHHHhccC---CeEEEEcChHHH
Q 023106 216 GVWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 216 ~~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
.+++.+.++.+ ..+++|||++++
T Consensus 134 ~l~~~l~~~~~~~~tii~~sh~~~~~ 159 (173)
T cd03246 134 ALNQAIAALKAAGATRIVIAHRPETL 159 (173)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 45555555543 247999999876
No 208
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.93 E-value=4.7e-27 Score=196.76 Aligned_cols=131 Identities=13% Similarity=0.093 Sum_probs=102.9
Q ss_pred EEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
|+++|+++.|++ +. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.. .
T Consensus 1 i~~~~~~~~~~~~~~----~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~--------~ 65 (166)
T cd03223 1 IELENLSLATPDGRV----LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEGE--------D 65 (166)
T ss_pred CEEEEEEEEcCCCCe----eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCCc--------e
Confidence 468899999953 33 8999999999999999999999999999999999999 9999 8887641 1
Q ss_pred CCCCCChhH--HHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------ch
Q 023106 156 APWTFNPLL--LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GV 217 (287)
Q Consensus 156 ~~~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~ 217 (287)
+.+.+|... ..++.+|+.+. .+.+|||||+||++| .+|+++|||| .+
T Consensus 66 i~~~~q~~~~~~~tv~~nl~~~---------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l 130 (166)
T cd03223 66 LLFLPQRPYLPLGTLREQLIYP---------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL 130 (166)
T ss_pred EEEECCCCccccccHHHHhhcc---------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHH
Confidence 223333221 25888998753 467899999999988 8999999999 34
Q ss_pred HHHHHhccCCeEEEEcChHHH
Q 023106 218 WKDVSSMFDEKWFIEVDLDTA 238 (287)
Q Consensus 218 ~~~l~~~~~~~i~vtHd~~~~ 238 (287)
.+.+.++....|++|||.+..
T Consensus 131 ~~~l~~~~~tiiivsh~~~~~ 151 (166)
T cd03223 131 YQLLKELGITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHhCCEEEEEeCChhHH
Confidence 455555433357999998754
No 209
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.1e-27 Score=217.23 Aligned_cols=177 Identities=15% Similarity=0.197 Sum_probs=125.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~-- 149 (287)
.++|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++.. .|++| +.++|.++..
T Consensus 37 ~~~l~i~~l~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 37 ETVIEARDLNVFYGDEQ----ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred CceEEEEEEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 45799999999998655 999999999999999999999999999999999998510 14789 8899976521
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCcee-------------eccCCc-----cCCCCCCCceeccccceEEE-
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVY-------------APSFDH-----GVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~-------------~~~~~~-----~~~~~~~~~LSgGekqRv~I- 205 (287)
...+..+.+.+|...+ .++.+|+.+..... ...+.- ...++.+.+|||||||||+|
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LA 192 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIA 192 (285)
T ss_pred cchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHH
Confidence 1122334444444221 36777776431110 000110 12356789999999999988
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH-----HHHhcCCCcHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL-----KRHISTGKPPDV 255 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi-----gr~i~~G~~~~~ 255 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|++.++
T Consensus 193 raL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 193 RAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 8999999999 45555555543 25799999999876 421 677777776665
No 210
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1e-27 Score=216.57 Aligned_cols=177 Identities=16% Similarity=0.195 Sum_probs=130.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
+|+++||++.|++.. ...+|+++||+|.+|+++||+|+||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 4 ~l~~~~l~~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~~ 79 (277)
T PRK13642 4 ILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAENVWNL 79 (277)
T ss_pred eEEEEEEEEEcCCCC-cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcCCHHHH
Confidence 699999999997421 1238999999999999999999999999999999999999 9999 8999976431 122
Q ss_pred hCCCCCCCChhH--H--HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 153 RRGAPWTFNPLL--L--LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 153 ~~~~~~~~~~~~--~--~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
+..+.+.+|... + .++.+|+.++..... . .+. ....++.+..|||||+||++| .+|
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p 159 (277)
T PRK13642 80 RRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP 159 (277)
T ss_pred hcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 344666666532 2 588898875421100 0 000 012356889999999999998 899
Q ss_pred CEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+++|||| .+++.+.++.+ .+|++|||++++.. +++ |++++.|+++++..
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 160 EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999 45555555543 24799999999864 443 78788888877653
No 211
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=7.8e-28 Score=208.62 Aligned_cols=154 Identities=20% Similarity=0.214 Sum_probs=113.1
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~~ 155 (287)
|+++|+++.|++.. .|+||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..+..
T Consensus 1 i~~~~l~~~~~~~~------~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGEQP------MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADRP 71 (211)
T ss_pred CEEEeEEEEeCCEe------cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHcc
Confidence 46899999997632 29999999999999999999999999999999999 9999 88999764321 11233
Q ss_pred CCCCCChhHH---HHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 156 APWTFNPLLL---LNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 156 ~~~~~~~~~~---~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
+.+.+|...+ .++.+|+.+....... .+. ....++.+.+||+||+||++| .+|+++|
T Consensus 72 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~lll 151 (211)
T cd03298 72 VSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLL 151 (211)
T ss_pred EEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4455544332 5888998764321100 000 012357889999999999988 8999999
Q ss_pred Eec-----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 213 LDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
||| .+++.|.++.. .+|++|||++++..
T Consensus 152 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 194 (211)
T cd03298 152 LDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 999 45566665532 24699999998865
No 212
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.5e-27 Score=213.32 Aligned_cols=175 Identities=16% Similarity=0.235 Sum_probs=126.8
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~ 148 (287)
+++|+++||++.|++.. +|+|+||+|.+|++++|+|+||||||||+++|+|+++ | ++| +.++|.++.
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---~~~~~~~~G~i~~~g~~i~ 77 (259)
T PRK14260 5 IPAIKVKDLSFYYNTSK----AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE---LEGPVKVEGVVDFFGQNIY 77 (259)
T ss_pred cceEEEEEEEEEECCeE----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC---cccCCccceEEEECCEecc
Confidence 45799999999998655 8999999999999999999999999999999999987 5 479 889997653
Q ss_pred H-----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee--c-------------cCC-----ccCCCCCCCceeccccc
Q 023106 149 E-----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA--P-------------SFD-----HGVGDPVEDDILVGLQH 201 (287)
Q Consensus 149 ~-----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--~-------------~~~-----~~~~~~~~~~LSgGekq 201 (287)
. ...+.++.+.+|...+ .++.+|+.+...... + .+. ....++.+.+||+||+|
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 157 (259)
T PRK14260 78 DPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQ 157 (259)
T ss_pred ccccchHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHH
Confidence 1 1122345555554322 578888765311000 0 000 01235678899999999
Q ss_pred eEEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HH--H-------HHHhcCCC
Q 023106 202 KVVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RV--L-------KRHISTGK 251 (287)
Q Consensus 202 Rv~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rv--i-------gr~i~~G~ 251 (287)
||+| .+|+++|||| .+++.|.++.. .+|++|||++++.. |+ + |++++.|+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 237 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCC
Confidence 9988 8999999999 45555555433 25799999999976 32 2 56667788
Q ss_pred cHHHH
Q 023106 252 PPDVA 256 (287)
Q Consensus 252 ~~~~~ 256 (287)
+.++.
T Consensus 238 ~~~~~ 242 (259)
T PRK14260 238 TTQIF 242 (259)
T ss_pred HHHHh
Confidence 77764
No 213
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3.2e-27 Score=208.05 Aligned_cols=172 Identities=19% Similarity=0.219 Sum_probs=123.4
Q ss_pred EEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 78 VEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 78 i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
|+++|+++.|+ +.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~~----~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYDPGRP----VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeCCCCc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHH
Confidence 46889999996 344 8999999999999999999999999999999999999 9999 8899976542 122
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec----------cC-------C---ccCCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP----------SF-------D---HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~----------~~-------~---~~~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+.++...+ .++.+|+.+....... .. . ....++.+..||+||+|||+|
T Consensus 74 ~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~ 153 (236)
T cd03253 74 RRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAIL 153 (236)
T ss_pred HhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 2334444444322 5888888764321000 00 0 001234578999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+++.|.++.+ .+|++||+.+.+.. |++ |+++..|+.+++.
T Consensus 154 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 154 KNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 8999999999 34555555443 24699999999865 333 6666677766554
No 214
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.8e-27 Score=214.31 Aligned_cols=178 Identities=16% Similarity=0.166 Sum_probs=127.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~--~~p~~G-i~~~g~~~~~-- 149 (287)
.++|+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++. ..|++| +.++|.++..
T Consensus 23 ~~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQ----ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CcEEEEEEEEEEECCee----EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 34799999999998655 89999999999999999999999999999999999860 012789 8899976531
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceee---c------------cCCc-----cCCCCCCCceeccccceEE
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---P------------SFDH-----GVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---~------------~~~~-----~~~~~~~~~LSgGekqRv~ 204 (287)
...+..+.+.+|...+ .++.+|+.+...... . .+.. ...++.+.+|||||+|||+
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred cCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 1223344555544321 377888865321110 0 0000 1234678899999999999
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|++.++.
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 8 8999999999 44555555433 24799999999865 444 7777888877664
No 215
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.93 E-value=2.7e-28 Score=213.37 Aligned_cols=169 Identities=18% Similarity=0.226 Sum_probs=122.1
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGA 156 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~ 156 (287)
|+++|+++.|++.. +|+++||++.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.... ...+
T Consensus 1 l~l~~v~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~-~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRFGKQT----AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKD-LHKI 72 (223)
T ss_pred CEEEeEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccc-cccE
Confidence 46899999998655 8999999999999999999999999999999999999 9999 889987643211 1233
Q ss_pred CCCCChhH---HHHHHHHHhcCCceee----------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec--
Q 023106 157 PWTFNPLL---LLNCLKNLRNQGSVYA----------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-- 215 (287)
Q Consensus 157 ~~~~~~~~---~~tv~e~l~~~~~~~~----------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-- 215 (287)
.+.++... ..++.+|+.+...... ..+. ....++.+.+||+||+||++| .+|+++||||
T Consensus 73 ~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~ 152 (223)
T TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT 152 (223)
T ss_pred EEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 34444322 2577788764321110 0010 112356788999999999988 8999999999
Q ss_pred ---------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 216 ---------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 216 ---------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
.+++.|.++.+ ..|++|||++++.. |++ |+++..|++.+
T Consensus 153 ~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 153 NGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 45555655543 24799999999865 443 67777777653
No 216
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.93 E-value=1.4e-27 Score=212.95 Aligned_cols=172 Identities=13% Similarity=0.162 Sum_probs=121.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC----Ccc-eeeCCCCHHHHh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKA-SSFDSQDPKEAH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p----~~G-i~~~g~~~~~~~ 151 (287)
+|+++||++.| +.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ | ++| +.++|.++....
T Consensus 4 ~l~~~~l~~~~-~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~~~~ 75 (254)
T PRK10418 4 QIELRNIALQA-AQP----LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVAPCA 75 (254)
T ss_pred EEEEeCeEEEe-ccc----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeeccccc
Confidence 69999999999 444 8999999999999999999999999999999999998 8 899 889998653211
Q ss_pred -hhCCCCCCCChhH-----HHHHHHHHhcC-----Ccee-------eccCCcc----CCCCCCCceeccccceEEE----
Q 023106 152 -ARRGAPWTFNPLL-----LLNCLKNLRNQ-----GSVY-------APSFDHG----VGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 152 -~~~~~~~~~~~~~-----~~tv~e~l~~~-----~~~~-------~~~~~~~----~~~~~~~~LSgGekqRv~I---- 205 (287)
....+.+.+|... ..++.+++... .... ...+.-. ..++.+.+|||||+|||+|
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral 155 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALAL 155 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHH
Confidence 1123444444321 13444444321 0000 0001111 2356789999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++.+ .++++||+++.+.. |++ |+++..|+++++.
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 156 LCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 8999999999 45566665533 24699999999865 443 7777778877663
No 217
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.7e-27 Score=214.50 Aligned_cols=178 Identities=12% Similarity=0.143 Sum_probs=126.8
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~--~~~p~~G-i~~~g~~~~~-- 149 (287)
.++|+++|+++.|++.. +|+|+||+|.+|+++||+|+||||||||+++|+|+++ ...|++| +.++|.++..
T Consensus 22 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDH----ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred ceEEEEeeeEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 34799999999998655 8999999999999999999999999999999999985 1124789 8899875421
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceee-------c--------cCC-----ccCCCCCCCceeccccceEE
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-------P--------SFD-----HGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-------~--------~~~-----~~~~~~~~~~LSgGekqRv~ 204 (287)
...+..+.+.+|...+ .++.+|+.++..... . .+. ....++.+..|||||+||++
T Consensus 98 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~ 177 (271)
T PRK14238 98 YSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLC 177 (271)
T ss_pred ccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHH
Confidence 1122334455554322 478888865311100 0 000 01225678899999999999
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|+++|||| .+.+.|.++.. .+|++|||++++.. |++ |+++..|++.++.
T Consensus 178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 178 IARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 8 8999999999 34455555433 24799999999875 443 7777788877663
No 218
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=9.7e-27 Score=197.56 Aligned_cols=137 Identities=25% Similarity=0.353 Sum_probs=108.2
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----H
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~ 150 (287)
++|+++|+++.| +|+++||++++|++++|+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 3 ~~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 3 PVLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRD 71 (182)
T ss_pred cEEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCHHH
Confidence 379999999988 6899999999999999999999999999999999999 9999 8999976532 1
Q ss_pred hhhCCCCCCCChh------HHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec----
Q 023106 151 HARRGAPWTFNPL------LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG---- 215 (287)
Q Consensus 151 ~~~~~~~~~~~~~------~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE---- 215 (287)
..+..+.+.+|.. ...++.+|+.+... ||+||+||++| .+|+++||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-----------------LS~G~~qrl~la~al~~~p~llllDEP~~~ 134 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-----------------LSGGNQQKVVLARWLARDPRVLILDEPTRG 134 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh-----------------cCHHHHHHHHHHHHHccCCCEEEECCCCcC
Confidence 2233455555542 12588888876421 99999999988 8999999999
Q ss_pred -------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 216 -------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 -------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+++.+.++.+ ..|++|||++++..
T Consensus 135 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 135 VDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 45555555532 24699999988764
No 219
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.93 E-value=3.1e-27 Score=203.70 Aligned_cols=156 Identities=18% Similarity=0.137 Sum_probs=114.5
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--HhhhC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHARR 154 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~~ 154 (287)
|+++||++.|++.. +|+++||+|++|+++||+|+||||||||+++|+|+++ |++| +.++|.++.. ...+.
T Consensus 1 l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (201)
T cd03231 1 LEADELTCERDGRA----LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIAR 73 (201)
T ss_pred CEEEEEEEEeCCce----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhhh
Confidence 46899999998765 8999999999999999999999999999999999999 9999 8899876532 12223
Q ss_pred CCCCCCChhH---HHHHHHHHhcCCceee--------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec--
Q 023106 155 GAPWTFNPLL---LLNCLKNLRNQGSVYA--------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-- 215 (287)
Q Consensus 155 ~~~~~~~~~~---~~tv~e~l~~~~~~~~--------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-- 215 (287)
++.+.+|... ..++.+|+.+...... ..+. ....++.+.+|||||+||++| .+|+++||||
T Consensus 74 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 153 (201)
T cd03231 74 GLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT 153 (201)
T ss_pred heEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3444444332 2678888876432110 0011 012366789999999999988 8999999999
Q ss_pred ---------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 216 ---------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ---------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+.+.|.++.+ ..|++|||......
T Consensus 154 ~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~ 190 (201)
T cd03231 154 TALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSE 190 (201)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhh
Confidence 44555554432 24699998877654
No 220
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.93 E-value=2.4e-27 Score=204.20 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=114.9
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCcc-eeeCCCCHHH----H
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl--l~~~~p~~G-i~~~g~~~~~----~ 150 (287)
|+++|+++.|++.. +|+++||++.+|++++|+|+||||||||+++|+|+ +. |++| +.++|.++.. .
T Consensus 1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---p~~G~i~~~g~~~~~~~~~~ 73 (200)
T cd03217 1 LEIKDLHVSVGGKE----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE---VTEGEILFKGEDITDLPPEE 73 (200)
T ss_pred CeEEEEEEEeCCEE----eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCccEEEECCEECCcCCHHH
Confidence 46899999998654 99999999999999999999999999999999999 47 8999 8999976532 1
Q ss_pred hhhCCCCCCCChhHH---HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-------
Q 023106 151 HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG------- 215 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE------- 215 (287)
..+..+.+.++...+ .++.+++ .+....|||||+||++| .+|+++||||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~l----------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 137 (200)
T cd03217 74 RARLGIFLAFQYPPEIPGVKNADFL----------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI 137 (200)
T ss_pred HhhCcEEEeecChhhccCccHHHHH----------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 122335555555432 3444444 12346899999999988 8999999999
Q ss_pred ----chHHHHHhccC---CeEEEEcChHHHHH----HHH----HHHhcCCCcHHHH
Q 023106 216 ----GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 216 ----~~~~~l~~~~~---~~i~vtHd~~~~~~----rvi----gr~i~~G~~~~~~ 256 (287)
.+++.|.++.+ ..|++||+++.+.. |++ |++++.| +.++.
T Consensus 138 ~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 138 DALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 45566665543 24799999998762 222 6666777 44443
No 221
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=3.4e-27 Score=205.94 Aligned_cols=158 Identities=19% Similarity=0.216 Sum_probs=114.7
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~ 153 (287)
|+++|+++.|++.. ..+|+++||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 3 IEFKNVSLRYRPNL--PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred EEEEEEEEecCCCC--cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHHHHh
Confidence 78999999996421 128999999999999999999999999999999999999 9999 8999976532 1123
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceeec-------cC--Cc----------cCCCCCCCceeccccceEEE-----ec
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYAP-------SF--DH----------GVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-------~~--~~----------~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
..+.+.++...+ .++.+|+.+....... .+ .. ....+.+..||+||+||++| .+
T Consensus 78 ~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 78 SRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred hhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 334455544332 4788888643211000 00 00 01135788999999999988 89
Q ss_pred CCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ 240 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~ 240 (287)
|+++|||| .+++.|.++... +|++||+++++..
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 99999999 455556554332 4699999998865
No 222
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.1e-27 Score=204.97 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=114.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH--hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--HAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--~~~ 153 (287)
.+.++||+|.|+.......+|+++||+|.+|++++|+||||||||||+++|+|+++...|++| +.++|.++... ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 578999999997543334599999999999999999999999999999999999861114688 88999765321 222
Q ss_pred CCCCCCCChhH---HHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec----------
Q 023106 154 RGAPWTFNPLL---LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG---------- 215 (287)
Q Consensus 154 ~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE---------- 215 (287)
..+.+.++... .+++.+|+.+..... .++.+..||+||+||++| .+|+++||||
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~ 154 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK--------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTA 154 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc--------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHH
Confidence 33445554432 268999987653321 456788999999999988 8999999999
Q ss_pred -chHHHHHhccC---C-eEEEE-cChHHHHH
Q 023106 216 -GVWKDVSSMFD---E-KWFIE-VDLDTAMQ 240 (287)
Q Consensus 216 -~~~~~l~~~~~---~-~i~vt-Hd~~~~~~ 240 (287)
.+++.+.++.+ . .++++ |+.+.+..
T Consensus 155 ~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~ 185 (202)
T cd03233 155 LEILKCIRTMADVLKTTTFVSLYQASDEIYD 185 (202)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEcCCHHHHHH
Confidence 45666666543 2 24554 55566654
No 223
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=3.1e-27 Score=204.39 Aligned_cols=159 Identities=18% Similarity=0.147 Sum_probs=117.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++|+++.|++.. ..+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 6 ~l~~~~l~~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 6 EIEVENLSVRYAPDL--PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred eEEEEEEEEEeCCCC--cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhHHCCHHHH
Confidence 589999999997521 128999999999999999999999999999999999999 9999 89999865321 12
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeecc-CCccCCCCCCCceeccccceEEE-----ecCCEEeEec---------
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAPS-FDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG--------- 215 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE--------- 215 (287)
+.++.+.+|...+ .++.+|+.+........ ......++.+..|||||+||++| .+|+++||||
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 160 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT 160 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 3345555554322 48888886532111000 00001356789999999999988 8999999999
Q ss_pred --chHHHHHhccCC--eEEEEcChHHHHH
Q 023106 216 --GVWKDVSSMFDE--KWFIEVDLDTAMQ 240 (287)
Q Consensus 216 --~~~~~l~~~~~~--~i~vtHd~~~~~~ 240 (287)
.+++.|.++... .|++|||.+++..
T Consensus 161 ~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 161 DALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 455666665432 4799999998854
No 224
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.93 E-value=3.3e-27 Score=229.56 Aligned_cols=172 Identities=19% Similarity=0.191 Sum_probs=126.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--Ccc-eeeCCCCHHH----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKA-SSFDSQDPKE---- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p--~~G-i~~~g~~~~~---- 149 (287)
+|+++||++.|++.. +|+++||++.+|+++||+||||||||||+++|+|+++ | ++| +.++|+++..
T Consensus 1 ~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~~ 73 (500)
T TIGR02633 1 LLEMKGIVKTFGGVK----ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNIR 73 (500)
T ss_pred CEEEEeEEEEeCCeE----eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCHH
Confidence 488999999998755 8999999999999999999999999999999999987 7 689 8899876421
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceee----c--------------cCCcc-C-CCCCCCceeccccceEEE-
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA----P--------------SFDHG-V-GDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~----~--------------~~~~~-~-~~~~~~~LSgGekqRv~I- 205 (287)
...+.++++.+|...+ +++.+|+.++..... . .+.-. . .++.+.+|||||||||+|
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA 153 (500)
T TIGR02633 74 DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIA 153 (500)
T ss_pred HHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHH
Confidence 1123445566665432 688888876532110 0 00001 1 245688999999999988
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
.+|++||||| .+++.|.++.+. +|++|||++++.. |++ |+++..|++.++
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 8999999999 455555554332 4799999999876 443 677777766543
No 225
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.1e-26 Score=226.00 Aligned_cols=169 Identities=15% Similarity=0.210 Sum_probs=125.3
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
+++|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 2 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~ 74 (501)
T PRK11288 2 SPYLSFDGIGKTFPGVK----ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTT 74 (501)
T ss_pred CceEEEeeeEEEECCEE----EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHH
Confidence 35799999999998755 8999999999999999999999999999999999999 9999 8898875421
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCcee--e--c-------------cCC-ccCCCCCCCceeccccceEEE---
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVY--A--P-------------SFD-HGVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~--~--~-------------~~~-~~~~~~~~~~LSgGekqRv~I--- 205 (287)
...+.++.+.+|...+ +++.+|+.++.... . . .+. ....++.+.+|||||||||+|
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 75 AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred HHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHH
Confidence 1223445666665432 58889988743110 0 0 000 012357889999999999998
Q ss_pred --ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCC
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G 250 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |+++..+
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~ 222 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATF 222 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 8999999999 45555555433 24799999999875 443 5555443
No 226
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=5.6e-27 Score=230.68 Aligned_cols=166 Identities=14% Similarity=0.029 Sum_probs=119.0
Q ss_pred ccEEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhh
Q 023106 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~ 152 (287)
++||+++||++.|+ +.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.+++..
T Consensus 4 ~~~l~i~~l~~~y~~~~~----il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~~~------ 70 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQ----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAPGI------ 70 (556)
T ss_pred cEEEEEeeEEEEeCCCCe----eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCCC------
Confidence 34899999999998 555 9999999999999999999999999999999999999 9999 7766421
Q ss_pred hCCCCCCCChhH---HHHHHHHHhcCCce---------------eec---------------------------------
Q 023106 153 RRGAPWTFNPLL---LLNCLKNLRNQGSV---------------YAP--------------------------------- 181 (287)
Q Consensus 153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~---------------~~~--------------------------------- 181 (287)
.+++.+|... .+++.+|+.++... ...
T Consensus 71 --~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (556)
T PRK11819 71 --KVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIA 148 (556)
T ss_pred --EEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 1223333221 24666666543100 000
Q ss_pred --cCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHH---
Q 023106 182 --SFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ--- 240 (287)
Q Consensus 182 --~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~--- 240 (287)
.+.-...++.+.+|||||||||+| .+|++||||| .+.+.|.++...+|+||||++++..
T Consensus 149 l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d 228 (556)
T PRK11819 149 MDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAG 228 (556)
T ss_pred HHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcC
Confidence 000012367889999999999988 8999999999 3455555554445799999999976
Q ss_pred HHH----HHHh-cCCCcHHH
Q 023106 241 RVL----KRHI-STGKPPDV 255 (287)
Q Consensus 241 rvi----gr~i-~~G~~~~~ 255 (287)
+++ |+++ ..|..++.
T Consensus 229 ~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 229 WILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred eEEEEeCCEEEEecCCHHHH
Confidence 444 6655 56766553
No 227
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=1.2e-26 Score=236.71 Aligned_cols=177 Identities=19% Similarity=0.242 Sum_probs=136.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|+.++ .+.+|+++||.|++|+.+||+|||||||||++++|.+++. |++| |.+||.++... ..
T Consensus 350 ~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd---P~~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD---PTSGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred ceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCceEEEcCccchhcchHHH
Confidence 599999999998875 5569999999999999999999999999999999999999 9999 99999987542 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-------------c--------cCCccCCCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-------------P--------SFDHGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-------------~--------~~~~~~~~~~~~~LSgGekqRv~I---- 205 (287)
+..++.++|.+-+ .|+.|||.++..-.. . .++..... ..-+|||||||||+|
T Consensus 426 r~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge-~g~qLSGGQKQRIAIARal 504 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGE-RGVQLSGGQKQRIAIARAL 504 (1228)
T ss_pred HhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccC-CCCCCChHHHHHHHHHHHH
Confidence 3345666666544 799999999863110 0 11111122 334599999999999
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|++||||| .+.+.|.+... .+|+|+|.+..+.. +++ |++++.|+.+|++..
T Consensus 505 v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 505 VRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIAL 577 (1228)
T ss_pred HhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhc
Confidence 8999999999 22333333332 36899999999988 444 899999999998764
No 228
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.1e-27 Score=234.72 Aligned_cols=168 Identities=16% Similarity=0.136 Sum_probs=119.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
.++|+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| |.+++. ..
T Consensus 310 ~~~l~~~~l~~~y~~~~----il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~-~~----- 376 (638)
T PRK10636 310 NPLLKMEKVSAGYGDRI----ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLAKG-IK----- 376 (638)
T ss_pred CceEEEEeeEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCC-EE-----
Confidence 45899999999998765 9999999999999999999999999999999999999 9999 766532 11
Q ss_pred CCCCCCCChh-----HHHHHHHHHhc-CCc---------eeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 154 RGAPWTFNPL-----LLLNCLKNLRN-QGS---------VYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 154 ~~~~~~~~~~-----~~~tv~e~l~~-~~~---------~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
+++.+|.. ...++++++.. ... +....+.....++.+..|||||||||+| .+|++|||
T Consensus 377 --igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlL 454 (638)
T PRK10636 377 --LGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLL 454 (638)
T ss_pred --EEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11222210 01244444321 100 0111222223467899999999999988 89999999
Q ss_pred ec-----------chHHHHHhccCCeEEEEcChHHHHH---HHH----HHHh-cCCCcHHHHH
Q 023106 214 DG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 257 (287)
Q Consensus 214 DE-----------~~~~~l~~~~~~~i~vtHd~~~~~~---rvi----gr~i-~~G~~~~~~~ 257 (287)
|| .+.+.|.++-..+|+||||++++.. |++ |+++ +.|+..+...
T Consensus 455 DEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 455 DEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99 4455555553335799999999876 443 6765 5788777643
No 229
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.1e-26 Score=198.90 Aligned_cols=143 Identities=15% Similarity=0.174 Sum_probs=108.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCcc-eeeCCCCHHHHhhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll--~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
+|+++|+++.|++......+|+++||++++|++++|+||||||||||+++|+|++ + |++| +.++|.++.. ..+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~~~G~i~~~g~~~~~-~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG---VITGEILINGRPLDK-NFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CcceEEEECCEehHH-Hhh
Confidence 5899999999975110123899999999999999999999999999999999975 4 7889 8899987642 222
Q ss_pred CCCCCCCChhH---HHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec----------
Q 023106 154 RGAPWTFNPLL---LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG---------- 215 (287)
Q Consensus 154 ~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE---------- 215 (287)
..+.+.+|... ..++.+|+.+.... .+|||||+||+.| .+|+++|+||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~--------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~ 144 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALL--------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAA 144 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHH--------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHH
Confidence 33445555432 26888998763211 1899999999988 8999999999
Q ss_pred -chHHHHHhccC---CeEEEEcChHH
Q 023106 216 -GVWKDVSSMFD---EKWFIEVDLDT 237 (287)
Q Consensus 216 -~~~~~l~~~~~---~~i~vtHd~~~ 237 (287)
.+++.+.++.+ ..|++||+++.
T Consensus 145 ~~l~~~l~~~~~~~~tiiivtH~~~~ 170 (192)
T cd03232 145 YNIVRFLKKLADSGQAILCTIHQPSA 170 (192)
T ss_pred HHHHHHHHHHHHcCCEEEEEEcCChH
Confidence 45555555432 24699999984
No 230
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.3e-27 Score=210.36 Aligned_cols=172 Identities=19% Similarity=0.299 Sum_probs=124.8
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~~ 155 (287)
|+++|++++|++.. +++++||+|.+|+++||+|+||||||||+++|+|+++ |+.| +.++|.++... ..+..
T Consensus 1 l~~~~l~~~~~~~~----il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03300 1 IELENVSKFYGGFV----ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKRP 73 (232)
T ss_pred CEEEeEEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcc
Confidence 46899999998765 9999999999999999999999999999999999999 9999 88999755321 11233
Q ss_pred CCCCCChhHH---HHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 156 APWTFNPLLL---LNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 156 ~~~~~~~~~~---~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
+.+.++...+ +++.+|+.+....... .+. ....++.+..||+||+||++| .+|+++|
T Consensus 74 i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll 153 (232)
T cd03300 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLL 153 (232)
T ss_pred eEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4444444322 4777887643211100 000 112356788999999999988 8999999
Q ss_pred Eec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 213 LDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
||| .+++.+.++.. .++++||+++++.. |++ |++++.|+..++.
T Consensus 154 lDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 154 LDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 999 45555555532 34699999999865 443 6777777766554
No 231
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.6e-27 Score=229.62 Aligned_cols=176 Identities=16% Similarity=0.180 Sum_probs=126.4
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-Ccc-eeeCCCCHHH----
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKA-SSFDSQDPKE---- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-~~G-i~~~g~~~~~---- 149 (287)
++|+++||++.|+... ...+|+|+||+|++|+++||+||||||||||+++|+|+++ | ++| +.++|.++..
T Consensus 258 ~~l~~~~l~~~~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~~~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 258 VILEVRNLTAWDPVNP-HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWEGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred ceEEEecCcccccccc-ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCcEEEECCEECCCCCHH
Confidence 4799999999994210 1128999999999999999999999999999999999987 6 899 8888875421
Q ss_pred HhhhCCCCCCCChh------HHHHHHHHHhcCCc--eee-----------------ccCCc--cCCCCCCCceeccccce
Q 023106 150 AHARRGAPWTFNPL------LLLNCLKNLRNQGS--VYA-----------------PSFDH--GVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 ~~~~~~~~~~~~~~------~~~tv~e~l~~~~~--~~~-----------------~~~~~--~~~~~~~~~LSgGekqR 202 (287)
...+.++.+.+|.. ..+++.+|+.++.. ... ..+.- ...++.+.+||||||||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqr 413 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQK 413 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHH
Confidence 12234456666553 12688888865321 100 01111 13467889999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
|+| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |+++..|+++++
T Consensus 414 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 414 AVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 988 8999999999 44555555433 24799999999876 444 777777776665
No 232
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.93 E-value=9.5e-27 Score=202.97 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=112.2
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~ 153 (287)
|+++|+++.|++.. ..+|+|+||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (220)
T cd03245 3 IEFRNVSFSYPNQE--IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPADLR 77 (220)
T ss_pred EEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHHHHH
Confidence 78999999997521 128999999999999999999999999999999999999 9999 8899976532 1122
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceeec--------cCCc-cCCC-----------CCCCceeccccceEEE-----e
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYAP--------SFDH-GVGD-----------PVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~~--------~~~~-~~~~-----------~~~~~LSgGekqRv~I-----~ 206 (287)
..+.+.+|...+ .++.+|+.+....... .+.- ...+ ..+.+|||||+||+.| .
T Consensus 78 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~ 157 (220)
T cd03245 78 RNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN 157 (220)
T ss_pred hhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 334444443321 5888888764221100 0000 0011 2357999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTA 238 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~ 238 (287)
+|+++|||| .+++.|.++.. .+|++|||+++.
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~ 202 (220)
T cd03245 158 DPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL 202 (220)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 999999999 45566666544 246999999975
No 233
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.93 E-value=9.7e-27 Score=235.06 Aligned_cols=176 Identities=18% Similarity=0.154 Sum_probs=133.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ..+|+|+||+|++|+.+||+|+||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 477 ~I~~~~vsf~y~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 477 YVELRNITFGYSPLE--PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred eEEEEEEEEecCCCC--CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCCHHHH
Confidence 599999999997521 138999999999999999999999999999999999999 9999 99999987542 23
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCc-eeec----------------cCCccC---CCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGS-VYAP----------------SFDHGV---GDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~-~~~~----------------~~~~~~---~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|+..+ .|+.||+.++.. .... ....+. -......||||||||++|
T Consensus 552 r~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall 631 (710)
T TIGR03796 552 ANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV 631 (710)
T ss_pred HhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh
Confidence 4446666766554 689999987532 1000 000011 112346799999999999
Q ss_pred ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+.+.+.+.-...|+|||+++.+.. |++ |++++.|+.+++..
T Consensus 632 ~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 632 RNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 8999999999 4555666533345799999999877 655 89899999988864
No 234
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=5.9e-27 Score=208.26 Aligned_cols=178 Identities=14% Similarity=0.184 Sum_probs=127.0
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~--~~p~~G-i~~~g~~~~~-- 149 (287)
|.+|+++||++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|++.. ..|++| +.++|.++..
T Consensus 1 ~~~l~~~~v~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 1 MYRIEVENLNTYFDDAH----ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred CcEEEEEeEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 44799999999998655 89999999999999999999999999999999998641 113789 8999976532
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceee----c-----------cCC-----ccCCCCCCCceeccccceEE
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA----P-----------SFD-----HGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~----~-----------~~~-----~~~~~~~~~~LSgGekqRv~ 204 (287)
...+.++.+.+|...+ .++.+|+.+...... . .+. ....++.+..||+||+||++
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~ 156 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLC 156 (250)
T ss_pred ccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHH
Confidence 1123345555544321 478888865421110 0 000 01125678899999999999
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|+++|||| .+.+.|.++... +|++||+++++.. +++ |++++.|++.++.
T Consensus 157 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 157 IARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 8 8999999999 445555554332 4799999999987 332 6777788877763
No 235
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.93 E-value=2.6e-27 Score=205.79 Aligned_cols=154 Identities=20% Similarity=0.209 Sum_probs=113.5
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~~ 155 (287)
++++||++.|+. .+.++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..+..
T Consensus 1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP 71 (213)
T ss_pred CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence 468999999963 5679999999999999999999999999999999999 9999 89999765321 12233
Q ss_pred CCCCCChhHH---HHHHHHHhcCCceee--c------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 156 APWTFNPLLL---LNCLKNLRNQGSVYA--P------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 156 ~~~~~~~~~~---~tv~e~l~~~~~~~~--~------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
+.+.+|...+ +++.+|+.+...... . .+. ....++.+.+||+||+||++| .+|+++|
T Consensus 72 i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 151 (213)
T TIGR01277 72 VSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILL 151 (213)
T ss_pred eEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4555554332 588888865321100 0 000 012367889999999999988 8999999
Q ss_pred Eec-----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 213 LDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
||| .+++.|.++.+ ..|++||+.+++..
T Consensus 152 lDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~ 194 (213)
T TIGR01277 152 LDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARA 194 (213)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 999 45556665542 24799999998764
No 236
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.92 E-value=1e-26 Score=194.16 Aligned_cols=123 Identities=24% Similarity=0.346 Sum_probs=96.6
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH----hh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA----HA 152 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~----~~ 152 (287)
|+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 1 l~~~~l~~~~~~~~----vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~ 73 (163)
T cd03216 1 LELRGITKRFGGVK----ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDAR 73 (163)
T ss_pred CEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHH
Confidence 46899999998755 9999999999999999999999999999999999999 9999 88888654210 00
Q ss_pred hCCCCCCCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------c
Q 023106 153 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------G 216 (287)
Q Consensus 153 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~ 216 (287)
+..+.+.+ +||+||+||++| .+|+++|||| .
T Consensus 74 ~~~i~~~~---------------------------------qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~ 120 (163)
T cd03216 74 RAGIAMVY---------------------------------QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVER 120 (163)
T ss_pred hcCeEEEE---------------------------------ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHH
Confidence 01111111 199999999988 8999999999 4
Q ss_pred hHHHHHhccC---CeEEEEcChHHHHH
Q 023106 217 VWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 217 ~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+++.++++.+ ..|++|||++.+..
T Consensus 121 l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 121 LFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 5555655533 24699999998764
No 237
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.92 E-value=5.3e-27 Score=229.59 Aligned_cols=178 Identities=15% Similarity=0.186 Sum_probs=126.1
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPKE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~~ 149 (287)
+||+++||++.|++......+|+++||+|.+|+++||+||||||||||+++|+|+++ | ++| +.++|.++..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP---SPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCcCCccceEEEECCEeccc
Confidence 479999999999631001238999999999999999999999999999999999998 6 689 8899986522
Q ss_pred -----H--hhhCCCCCCCChhH-----HHHHHHHHhcCCc----eee-----------ccCCcc----CCCCCCCceecc
Q 023106 150 -----A--HARRGAPWTFNPLL-----LLNCLKNLRNQGS----VYA-----------PSFDHG----VGDPVEDDILVG 198 (287)
Q Consensus 150 -----~--~~~~~~~~~~~~~~-----~~tv~e~l~~~~~----~~~-----------~~~~~~----~~~~~~~~LSgG 198 (287)
. .+...+++.+|... ..++.+++.+... ... ..+.-. ..++.+.+||||
T Consensus 81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgG 160 (529)
T PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG 160 (529)
T ss_pred CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHH
Confidence 1 11234566666532 2566666543210 000 001110 125689999999
Q ss_pred ccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCC
Q 023106 199 LQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 199 ekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~ 251 (287)
|||||+| .+|++||||| .+++.|.++.+ .+|+||||++.+.. |++ |++++.|.
T Consensus 161 e~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~ 240 (529)
T PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999998 8999999999 45566666532 24799999999875 444 77777777
Q ss_pred cHHHH
Q 023106 252 PPDVA 256 (287)
Q Consensus 252 ~~~~~ 256 (287)
+.++.
T Consensus 241 ~~~~~ 245 (529)
T PRK15134 241 AATLF 245 (529)
T ss_pred HHHHh
Confidence 77653
No 238
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.7e-27 Score=208.67 Aligned_cols=174 Identities=16% Similarity=0.180 Sum_probs=125.7
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC------CCHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS------QDPK 148 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g------~~~~ 148 (287)
++|+++|++++|++.. +|+|+||++.+|++++|+|+||||||||+++|+|++. |++| +.++| .++.
T Consensus 9 ~~i~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g~~~~ 81 (257)
T PRK14246 9 DVFNISRLYLYINDKA----ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKDIF 81 (257)
T ss_pred hheeeeeEEEecCCce----eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECCcccc
Confidence 4799999999998866 9999999999999999999999999999999999999 8886 55554 4432
Q ss_pred ---HHhhhCCCCCCCChhHH---HHHHHHHhcCCceee--c-------------cCCc-----cCCCCCCCceeccccce
Q 023106 149 ---EAHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--P-------------SFDH-----GVGDPVEDDILVGLQHK 202 (287)
Q Consensus 149 ---~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--~-------------~~~~-----~~~~~~~~~LSgGekqR 202 (287)
....+..+.+.++...+ .++.+|+.++..... . .+.- ...++.+..||+||+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 161 (257)
T PRK14246 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQR 161 (257)
T ss_pred cCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHH
Confidence 11223345555554322 578888875321100 0 0110 12356788999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
++| .+|+++|||| .+.+.+.++.+ .+|++||+++.+.. +++ |+++..|+++++.
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 988 8999999999 34445544433 35799999998865 443 7777788877764
No 239
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=6.3e-27 Score=229.15 Aligned_cols=165 Identities=13% Similarity=0.112 Sum_probs=114.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
||+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|...
T Consensus 1 ml~i~~ls~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~~~-------- 65 (530)
T PRK15064 1 MLSTANITMQFGAKP----LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDPNER-------- 65 (530)
T ss_pred CEEEEEEEEEeCCcE----eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCCCE--------
Confidence 489999999998765 9999999999999999999999999999999999999 9999 77876320
Q ss_pred CCCCCChh---HHHHHHHHHhcCCc------------------------------------------------eeeccCC
Q 023106 156 APWTFNPL---LLLNCLKNLRNQGS------------------------------------------------VYAPSFD 184 (287)
Q Consensus 156 ~~~~~~~~---~~~tv~e~l~~~~~------------------------------------------------~~~~~~~ 184 (287)
+++.+|.. ..+++.+++.++.. +......
T Consensus 66 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 145 (530)
T PRK15064 66 LGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIP 145 (530)
T ss_pred EEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC
Confidence 11111111 11234444332110 0000000
Q ss_pred ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHH---HHH--
Q 023106 185 HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL-- 243 (287)
Q Consensus 185 ~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~---rvi-- 243 (287)
....++.+.+|||||||||+| .+|++||||| .+++.|.+.-..+|+||||++++.. |++
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l 225 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADL 225 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEE
Confidence 011235789999999999988 8999999999 3444444322235799999999876 444
Q ss_pred --HHHh-cCCCcHHHH
Q 023106 244 --KRHI-STGKPPDVA 256 (287)
Q Consensus 244 --gr~i-~~G~~~~~~ 256 (287)
|+++ +.|+++++.
T Consensus 226 ~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 226 DYGELRVYPGNYDEYM 241 (530)
T ss_pred eCCEEEEecCCHHHHH
Confidence 6763 578776553
No 240
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.92 E-value=2.1e-26 Score=201.43 Aligned_cols=161 Identities=20% Similarity=0.165 Sum_probs=112.1
Q ss_pred EEEecCchhhhhhhh---hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeC--CC--CHH
Q 023106 77 VVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFD--SQ--DPK 148 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~---~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~--g~--~~~ 148 (287)
||+++||++.|+... ....+|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++| +.++ |. ++.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGAWVDLA 77 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCCccchh
Confidence 488999999996310 01238999999999999999999999999999999999999 9999 8887 42 332
Q ss_pred H----H---hhhCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccC--CccCCCCCCCceeccccce
Q 023106 149 E----A---HARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSF--DHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 149 ~----~---~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~--~~~~~~~~~~~LSgGekqR 202 (287)
. . ....++.+.+|...+ +++.+++.+...... ..+ .....++.+.+||+||+||
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr 157 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQR 157 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHH
Confidence 1 0 112345555554332 567777654211000 001 1112356789999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++| .+|+++|||| .+.+.|.++.+ ..+++|||++++..
T Consensus 158 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~ 214 (224)
T TIGR02324 158 VNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVREL 214 (224)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 988 8999999999 44555555433 24799999888753
No 241
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.92 E-value=9.2e-27 Score=234.40 Aligned_cols=176 Identities=18% Similarity=0.225 Sum_probs=133.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
.|+++||+++|++.. ..+|+|+||+|++|+.+||+|+||||||||+|+|+|++. |++| +.++|.++.. ...
T Consensus 451 ~I~~~nvsf~Y~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 525 (686)
T TIGR03797 451 AIEVDRVTFRYRPDG--PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDVQAV 525 (686)
T ss_pred eEEEEEEEEEcCCCC--ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCHHHH
Confidence 599999999996321 238999999999999999999999999999999999999 9999 9999987643 223
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec----------------cCCccC---CCCCCCceeccccceEEE-----e
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP----------------SFDHGV---GDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~----------------~~~~~~---~~~~~~~LSgGekqRv~I-----~ 206 (287)
+..+++++|+..+ -|+.||+.++...... ....+. -......||||||||++| .
T Consensus 526 r~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~ 605 (686)
T TIGR03797 526 RRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR 605 (686)
T ss_pred HhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence 4446666666544 6889999886431000 000000 012345799999999998 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+|+++|||| .+.+.+.++-...|+|||+++.+.. |++ |++++.|+.+++..
T Consensus 606 ~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 606 KPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999 4556666654456799999998876 655 89999999888754
No 242
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.92 E-value=8.1e-27 Score=210.31 Aligned_cols=172 Identities=17% Similarity=0.228 Sum_probs=124.3
Q ss_pred EEecCchhhhh--hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---h
Q 023106 78 VEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---H 151 (287)
Q Consensus 78 i~~~~l~~~y~--~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~ 151 (287)
|+++||++.|. +.. +|+|+||+|++|+++||+|+||||||||+++|+|+++ ++| +.++|.++... .
T Consensus 3 i~~~nls~~~~~~~~~----~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~----~~G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 3 MTVKDLTAKYTEGGNA----VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGDIQIDGVSWNSVPLQK 74 (275)
T ss_pred EEEEEEEEEeCCCCCc----ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEhhhCCHHH
Confidence 78999999994 333 8999999999999999999999999999999999985 468 99999876431 2
Q ss_pred hhCCCCCCCChhHH--HHHHHHHhcCCceee-------ccCC-ccCCCCCCC-----------ceeccccceEEE-----
Q 023106 152 ARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-------PSFD-HGVGDPVED-----------DILVGLQHKVVI----- 205 (287)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-------~~~~-~~~~~~~~~-----------~LSgGekqRv~I----- 205 (287)
.+..+.+.+|...+ .++.+|+........ .... ....++.+. .||+||+||++|
T Consensus 75 lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall 154 (275)
T cd03289 75 WRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVL 154 (275)
T ss_pred HhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence 23344555554432 588888853221100 0000 001123344 499999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+.+.|.+.... +|+|||+++.+.. |++ |++++.|+++++..
T Consensus 155 ~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 155 SKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh
Confidence 8999999999 445555554433 4799999998876 544 88889999999865
No 243
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8.4e-27 Score=213.33 Aligned_cols=177 Identities=16% Similarity=0.192 Sum_probs=127.2
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~--- 149 (287)
++|+++||++.|++.. +|+++||+|.+|+++||+|+||||||||+++|+|+++.. .|++| +.++|.++..
T Consensus 44 ~~l~i~nl~~~~~~~~----iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 44 AKLSVEDLDVYYGDDH----ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred ceEEEEEEEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3799999999998755 999999999999999999999999999999999998510 14789 8899876421
Q ss_pred --HhhhCCCCCCCChhHH--HHHHHHHhcCCcee-------------e--cc------------CC-----ccCCCCCCC
Q 023106 150 --AHARRGAPWTFNPLLL--LNCLKNLRNQGSVY-------------A--PS------------FD-----HGVGDPVED 193 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~-------------~--~~------------~~-----~~~~~~~~~ 193 (287)
...+..+.+.+|...+ .++.+|+.++.... . .. +. ....++.+.
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 199 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL 199 (305)
T ss_pred cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence 1122345555554321 47888887542110 0 00 00 011256788
Q ss_pred ceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HH--H---HHHh
Q 023106 194 DILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RV--L---KRHI 247 (287)
Q Consensus 194 ~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rv--i---gr~i 247 (287)
+|||||+|||+| .+|++||||| .+++.|.++.+. +|++|||++.+.. |+ + |+++
T Consensus 200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~ 279 (305)
T PRK14264 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELV 279 (305)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEE
Confidence 999999999988 8999999999 455566555443 4699999999876 53 1 6777
Q ss_pred cCCCcHHHH
Q 023106 248 STGKPPDVA 256 (287)
Q Consensus 248 ~~G~~~~~~ 256 (287)
+.|+++++.
T Consensus 280 ~~g~~~~~~ 288 (305)
T PRK14264 280 EYDDTDKIF 288 (305)
T ss_pred EeCCHHHHH
Confidence 788877663
No 244
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.92 E-value=2.3e-27 Score=209.45 Aligned_cols=172 Identities=22% Similarity=0.368 Sum_probs=125.9
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~~ 155 (287)
|+++|+++.|++.. +|+++||++.+|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..+.+
T Consensus 1 i~i~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGSFQ----ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDRK 73 (237)
T ss_pred CEEEEEEEEECCee----eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcC
Confidence 46899999998765 9999999999999999999999999999999999999 9999 88998765321 11233
Q ss_pred CCCCCChhHH---HHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 156 APWTFNPLLL---LNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 156 ~~~~~~~~~~---~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
+.+.++...+ .++.+|+.+....... .+. ....++.+..||+||+||++| .+|+++|
T Consensus 74 i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll 153 (237)
T TIGR00968 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLL 153 (237)
T ss_pred EEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4455544332 4778887653221100 000 012356788999999999988 8999999
Q ss_pred Eec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 213 LDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
||| .+++.|.++.. .++++||+++++.. |++ |++++.|+.+++.
T Consensus 154 lDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 154 LDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 999 44555555432 25699999998765 443 7777778777664
No 245
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=7.6e-27 Score=228.08 Aligned_cols=179 Identities=18% Similarity=0.295 Sum_probs=125.4
Q ss_pred ccEEEecCchhhhhhh-hhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeC-CCC---HH
Q 023106 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFD-SQD---PK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~-~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~-g~~---~~ 148 (287)
.++|+++||++.|++. .....+|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++ |.+ +.
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGDEWVDMT 353 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCCcccccc
Confidence 3479999999999530 001228999999999999999999999999999999999999 9999 8885 532 11
Q ss_pred H------HhhhCCCCCCCChhH---HHHHHHHHhcCCcee-------------eccCCcc------CCCCCCCceecccc
Q 023106 149 E------AHARRGAPWTFNPLL---LLNCLKNLRNQGSVY-------------APSFDHG------VGDPVEDDILVGLQ 200 (287)
Q Consensus 149 ~------~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~-------------~~~~~~~------~~~~~~~~LSgGek 200 (287)
. ...+..+++.+|... .+++.+|+.+..... ...+.-. ..++++.+||||||
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~ 433 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence 0 111223445555432 267888876421100 0011111 23678999999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~ 253 (287)
|||+| .+|++||||| .+++.|.++.. .+|++|||++++.. |++ |++++.|++.
T Consensus 434 qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 513 (520)
T TIGR03269 434 HRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPE 513 (520)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99988 8999999999 45556655432 24799999999876 443 6777778776
Q ss_pred HHH
Q 023106 254 DVA 256 (287)
Q Consensus 254 ~~~ 256 (287)
++.
T Consensus 514 ~~~ 516 (520)
T TIGR03269 514 EIV 516 (520)
T ss_pred HHH
Confidence 653
No 246
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.5e-27 Score=216.46 Aligned_cols=179 Identities=15% Similarity=0.167 Sum_probs=130.9
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~--- 149 (287)
.+|+++|+++.|.+.. ..+|+|+||+|.+|+++||+|+||||||||+++|+|+.... .|++| +.++|.++..
T Consensus 79 ~~i~~~nls~~y~~~~--~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 79 NVFEIRNFNFWYMNRT--KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred ceEEEEeeEEEecCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3799999999995321 12899999999999999999999999999999999998510 14689 8999987642
Q ss_pred --HhhhCCCCCCCChhHH--HHHHHHHhcCCcee-e--------------ccCC-----ccCCCCCCCceeccccceEEE
Q 023106 150 --AHARRGAPWTFNPLLL--LNCLKNLRNQGSVY-A--------------PSFD-----HGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~-~--------------~~~~-----~~~~~~~~~~LSgGekqRv~I 205 (287)
...+..+.+.+|.+.+ .++.+|+.++.... . .... ....+..+..|||||||||+|
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 1223345555554332 68889987542110 0 0000 012356788999999999998
Q ss_pred -----ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -----VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -----~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+.+.|+++.+. .|+|||+++.+.. |++ |++++.|++.++.
T Consensus 237 ARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 237 ARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 8999999999 445555555533 4799999999876 555 8888999999985
No 247
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.92 E-value=6.7e-27 Score=226.95 Aligned_cols=169 Identities=14% Similarity=0.162 Sum_probs=125.0
Q ss_pred ecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----HhhhC
Q 023106 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----AHARR 154 (287)
Q Consensus 80 ~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~~~~~ 154 (287)
++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...+.
T Consensus 1 ~~nl~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 1 MSNISKSFPGVK----ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CCceEEEeCCEE----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHhC
Confidence 478999998755 9999999999999999999999999999999999999 9999 8899975421 11233
Q ss_pred CCCCCCChhH---HHHHHHHHhcCCcee-e---c-------------cCC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 155 GAPWTFNPLL---LLNCLKNLRNQGSVY-A---P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 155 ~~~~~~~~~~---~~tv~e~l~~~~~~~-~---~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
.+.+.+|... .+++.+|+.++.... . . .+. ....++.+.+|||||||||+| .+|
T Consensus 74 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p 153 (491)
T PRK10982 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNA 153 (491)
T ss_pred CEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCC
Confidence 4555555432 268889987643110 0 0 000 012356789999999999998 899
Q ss_pred CEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++
T Consensus 154 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999 45555555533 24799999999876 444 777777876665
No 248
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3e-27 Score=205.47 Aligned_cols=152 Identities=18% Similarity=0.217 Sum_probs=110.0
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-------
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------- 149 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------- 149 (287)
+++ +|+|+|++.. + |+||+|.+ ++++|+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 2 ~~~-~l~~~~~~~~----~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 70 (214)
T cd03297 2 LCV-DIEKRLPDFT----L--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINL 70 (214)
T ss_pred cee-eeeEecCCee----e--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhh
Confidence 455 8999998854 4 99999999 9999999999999999999999999 9999 8899875421
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceeec------------cCC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
...+..+.+.+|...+ .++.+|+.+......+ .+. ....++.+.+||||||||+.| .+|
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (214)
T cd03297 71 PPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQP 150 (214)
T ss_pred hhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCC
Confidence 1122334444544322 5777887653211000 010 012357889999999999988 899
Q ss_pred CEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+++|||| .+++.+.++.+ ..|++|||++++..
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 197 (214)
T cd03297 151 ELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEY 197 (214)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHH
Confidence 9999999 45555555532 24799999998864
No 249
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.92 E-value=3.5e-27 Score=202.76 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=111.3
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH--hhhC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--HARR 154 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--~~~~ 154 (287)
|+++|+++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++... ....
T Consensus 1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (198)
T TIGR01189 1 LAARNLACSRGERM----LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPHR 73 (198)
T ss_pred CEEEEEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhhh
Confidence 46899999998765 9999999999999999999999999999999999999 9999 88999764321 1122
Q ss_pred CCCCCCChhH---HHHHHHHHhcCCceeec----------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec
Q 023106 155 GAPWTFNPLL---LLNCLKNLRNQGSVYAP----------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG 215 (287)
Q Consensus 155 ~~~~~~~~~~---~~tv~e~l~~~~~~~~~----------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE 215 (287)
.+.+.++... ..++.+|+.+....... .+. ....++.+.+|||||+|||+| .+|+++||||
T Consensus 74 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 153 (198)
T TIGR01189 74 NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDE 153 (198)
T ss_pred heEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3334443322 25778887653211100 000 012356889999999999988 8999999999
Q ss_pred -----------chHHHHHhccC---CeEEEEcChHHH
Q 023106 216 -----------GVWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 216 -----------~~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
.+++.|.++.+ ..|++||+...+
T Consensus 154 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~ 190 (198)
T TIGR01189 154 PTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL 190 (198)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc
Confidence 44555555432 247999987644
No 250
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=5.6e-27 Score=229.00 Aligned_cols=174 Identities=13% Similarity=0.166 Sum_probs=123.8
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCcc-eeeC-----------
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKA-SSFD----------- 143 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll--~~~~p~~G-i~~~----------- 143 (287)
|+++|+++.|+++. +|+++||+|.+|+++||+||||||||||+++|+|++ + |++| +.++
T Consensus 1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~~ 73 (520)
T TIGR03269 1 IEVKNLTKKFDGKE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYVE 73 (520)
T ss_pred CEEEEEEEEECCeE----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEeccccccccccc
Confidence 57899999998655 999999999999999999999999999999999996 7 8999 7776
Q ss_pred ------------CCCHH----------H---HhhhCCCCCCCCh-hH---HHHHHHHHhcCCcee-ec------------
Q 023106 144 ------------SQDPK----------E---AHARRGAPWTFNP-LL---LLNCLKNLRNQGSVY-AP------------ 181 (287)
Q Consensus 144 ------------g~~~~----------~---~~~~~~~~~~~~~-~~---~~tv~e~l~~~~~~~-~~------------ 181 (287)
|.++. . ...+..+.+.+|. .. .+++.+|+.+..... ..
T Consensus 74 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l 153 (520)
T TIGR03269 74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLI 153 (520)
T ss_pred cccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22110 0 0112335555553 22 257788886532110 00
Q ss_pred -cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHH
Q 023106 182 -SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 182 -~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
.+. ....++.+.+|||||||||+| .+|++||||| .+++.|.++.. .+|+||||++.+.
T Consensus 154 ~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~ 233 (520)
T TIGR03269 154 EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIE 233 (520)
T ss_pred HHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 000 012357889999999999988 8999999999 45555555532 2479999999987
Q ss_pred H---HHH----HHHhcCCCcHHHHHH
Q 023106 240 Q---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 240 ~---rvi----gr~i~~G~~~~~~~~ 258 (287)
. |++ |+++..|++.++...
T Consensus 234 ~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 234 DLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred HhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 5 444 777777888777554
No 251
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.92 E-value=3e-27 Score=207.13 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=109.8
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGA 156 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~ 156 (287)
+.++++++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.+.... ..+.
T Consensus 23 l~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~--~~~~ 93 (224)
T cd03220 23 LGILGRKGEVGEFW----ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVSSLL--GLGG 93 (224)
T ss_pred hhhhhhhhhcCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEchhh--cccc
Confidence 78999999999876 9999999999999999999999999999999999999 9999 88998764211 1111
Q ss_pred CCCCChhHHHHHHHHHhcCCceee---c-----------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-
Q 023106 157 PWTFNPLLLLNCLKNLRNQGSVYA---P-----------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG- 215 (287)
Q Consensus 157 ~~~~~~~~~~tv~e~l~~~~~~~~---~-----------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE- 215 (287)
.+.. ..++.+|+.+...... . .+. ....++.+..|||||+||++| .+|+++||||
T Consensus 94 --~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 169 (224)
T cd03220 94 --GFNP--ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEV 169 (224)
T ss_pred --cCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1111 1455666543211100 0 000 112356789999999999988 8999999999
Q ss_pred ----------chHHHHHhccCC---eEEEEcChHHHHH
Q 023106 216 ----------GVWKDVSSMFDE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ----------~~~~~l~~~~~~---~i~vtHd~~~~~~ 240 (287)
.+++.+.++... +|++|||++++..
T Consensus 170 ~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~ 207 (224)
T cd03220 170 LAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKR 207 (224)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 345555554332 4699999998865
No 252
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=5.1e-26 Score=185.42 Aligned_cols=172 Identities=18% Similarity=0.210 Sum_probs=134.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH--------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP-------- 147 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~-------- 147 (287)
.|+++++++.||... +|.||+|+.+.|+.+.++||+|+|||||++.|.-+.. |.+| ..+.|...
T Consensus 2 sirv~~in~~yg~~q----~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~~ 74 (242)
T COG4161 2 SIQLNGINCFYGAHQ----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred ceEEcccccccccch----heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCccH
Confidence 389999999999877 9999999999999999999999999999999998888 9999 66665421
Q ss_pred -HHHhhhCCCCCCCChhHH---HHHHHHHhcCCc-eeec---------------cCCccCCCCCCCceeccccceEEE--
Q 023106 148 -KEAHARRGAPWTFNPLLL---LNCLKNLRNQGS-VYAP---------------SFDHGVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 148 -~~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~-~~~~---------------~~~~~~~~~~~~~LSgGekqRv~I-- 205 (287)
.....++.++++||.+.+ +++.+|+-...- +... ..-....++.|-.|||||+|||+|
T Consensus 75 k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiar 154 (242)
T COG4161 75 KAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIAR 154 (242)
T ss_pred HHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHH
Confidence 122345667888887765 899999865321 1000 011235588999999999999999
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccCCe---EEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~~~---i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
.+|++|++|| .+.+.|+++...+ ++|||..+.+.. +++ |++++.|+..-+
T Consensus 155 almmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 8999999999 4566777776665 599999999987 554 888888875543
No 253
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.92 E-value=6.4e-27 Score=208.20 Aligned_cols=171 Identities=18% Similarity=0.180 Sum_probs=118.9
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCcc-eeeCCCCHHHH--
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKA-SSFDSQDPKEA-- 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl--l~~~~p~~G-i~~~g~~~~~~-- 150 (287)
++|+++||++.|++.. +|+++||+|.+|+++||+|+||||||||+++|+|+ ++ |++| +.++|.++...
T Consensus 6 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 6 PILEIKNLHASVNENE----ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK---ILEGDILFKGESILDLEP 78 (252)
T ss_pred ceEEEEeEEEEeCCEE----eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc---CCCceEEECCEEcccCCh
Confidence 3799999999998654 99999999999999999999999999999999997 56 8899 88998764321
Q ss_pred --hhhCCCCCCCChhHH---HHHHHHHhcCCcee---------------------ec--cCCccCCCCCCC-ceeccccc
Q 023106 151 --HARRGAPWTFNPLLL---LNCLKNLRNQGSVY---------------------AP--SFDHGVGDPVED-DILVGLQH 201 (287)
Q Consensus 151 --~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~---------------------~~--~~~~~~~~~~~~-~LSgGekq 201 (287)
....++.+.+|...+ .++.+++.+..... .. .......++.+. .|||||+|
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~q 158 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKK 158 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHH
Confidence 111233333343221 34555554321100 00 000012245565 59999999
Q ss_pred eEEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH----HHH----HHHhcCCCcH
Q 023106 202 KVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPP 253 (287)
Q Consensus 202 Rv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~----rvi----gr~i~~G~~~ 253 (287)
||+| .+|+++|||| .+++.|.++.+ .+|++|||++++.. +++ |++++.|+++
T Consensus 159 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 159 RNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 9988 8999999999 45566665543 24799999998753 332 6777778776
No 254
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.2e-27 Score=209.38 Aligned_cols=171 Identities=18% Similarity=0.270 Sum_probs=124.4
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~~ 155 (287)
|+++|+++.|++ . +|+++||+|.+|+++||+|+||||||||+++|+|+++ |++| +.++|.++... ..+..
T Consensus 1 l~~~~l~~~~~~-~----~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE-F----KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKRD 72 (235)
T ss_pred CeeEeEEEEeCC-c----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHcC
Confidence 468899999975 2 7999999999999999999999999999999999999 9999 89999765321 11234
Q ss_pred CCCCCChhH---HHHHHHHHhcCCceee---c-----------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 156 APWTFNPLL---LLNCLKNLRNQGSVYA---P-----------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 156 ~~~~~~~~~---~~tv~e~l~~~~~~~~---~-----------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
+.+.++... ..++.+|+.+...... . .+. ....++.+..|||||+||++| .+|++++
T Consensus 73 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 152 (235)
T cd03299 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILL 152 (235)
T ss_pred EEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 444444432 2577787765321110 0 000 112356788999999999998 8999999
Q ss_pred Eec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 213 LDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
||| .+++.++++.. ..|++||+++++.. |++ |++++.|+++++.
T Consensus 153 lDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 153 LDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred ECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999 45566666532 24699999999875 443 7777788766653
No 255
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.9e-27 Score=208.94 Aligned_cols=174 Identities=18% Similarity=0.222 Sum_probs=124.8
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----cc-eeeCCCCHHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KA-SSFDSQDPKE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~-----~G-i~~~g~~~~~ 149 (287)
++|+++|+++.|++.. +|+|+||++++|+++||+|+||||||||+++|+|+++ |+ +| +.++|+++..
T Consensus 6 ~~l~~~nl~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i~~ 78 (261)
T PRK14258 6 PAIKVNNLSFYYDTQK----ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNIYE 78 (261)
T ss_pred ceEEEeeEEEEeCCee----EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEhhc
Confidence 4799999999998654 8999999999999999999999999999999999998 75 78 8888876521
Q ss_pred -----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee--c-------------cCC-----ccCCCCCCCceeccccce
Q 023106 150 -----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA--P-------------SFD-----HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 -----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--~-------------~~~-----~~~~~~~~~~LSgGekqR 202 (287)
...+..+.+.++...+ .++.+|+.+...... + .+. ....++.+..|||||+||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 79 RRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQR 158 (261)
T ss_pred cccchHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 1223334444443221 578888764311000 0 010 012356788999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhcc---CC-eEEEEcChHHHHH---HHH---------HHHhcCC
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMF---DE-KWFIEVDLDTAMQ---RVL---------KRHISTG 250 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~---~~-~i~vtHd~~~~~~---rvi---------gr~i~~G 250 (287)
++| .+|+++|||| .+++.|.++. .. .|++|||++++.. |++ |+++..|
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 238 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFG 238 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeC
Confidence 988 8999999999 3455555542 22 4699999999876 332 4556678
Q ss_pred CcHHHH
Q 023106 251 KPPDVA 256 (287)
Q Consensus 251 ~~~~~~ 256 (287)
+++++.
T Consensus 239 ~~~~~~ 244 (261)
T PRK14258 239 LTKKIF 244 (261)
T ss_pred CHHHHH
Confidence 887764
No 256
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1e-26 Score=208.68 Aligned_cols=174 Identities=15% Similarity=0.168 Sum_probs=125.3
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHH-
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPK- 148 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~- 148 (287)
.+|+++|+++.|++.. +|+|+||+|.+|++++|+|+||||||||+++|+|++. | ++| +.++|.++.
T Consensus 15 ~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQ----ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred ceEEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCCCcccEEEEcCccccc
Confidence 3699999999998655 9999999999999999999999999999999999987 5 688 889886542
Q ss_pred ------HHhhhCCCCCCCChhH--HHHHHHHHhcCCceee---c------------cCC-----ccCCCCCCCceecccc
Q 023106 149 ------EAHARRGAPWTFNPLL--LLNCLKNLRNQGSVYA---P------------SFD-----HGVGDPVEDDILVGLQ 200 (287)
Q Consensus 149 ------~~~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~---~------------~~~-----~~~~~~~~~~LSgGek 200 (287)
....+.++.+.++... ..++.+|+.+...... . ... ....++.+..||+||+
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 167 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQ 167 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHH
Confidence 1112333444444322 1477888865321100 0 000 0122467889999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
|||+| .+|+++|||| .+.+.|.++.. .+|++||+++++.. |++ |++++.|+.+++
T Consensus 168 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 168 QRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99998 8999999999 34455555443 25799999999876 444 777788887766
Q ss_pred H
Q 023106 256 A 256 (287)
Q Consensus 256 ~ 256 (287)
.
T Consensus 248 ~ 248 (265)
T PRK14252 248 F 248 (265)
T ss_pred H
Confidence 3
No 257
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.92 E-value=4.8e-27 Score=229.90 Aligned_cols=177 Identities=18% Similarity=0.250 Sum_probs=128.0
Q ss_pred cEEEecCchhhhhhhh-------hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 76 PVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~-------~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
++|+++||++.|+... ....+|+++||+|++|+++||+||||||||||+++|+|++ |++| |.++|.++
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i~~~g~~i 349 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEIWFDGQPL 349 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEEEECCEEc
Confidence 4799999999995210 0123899999999999999999999999999999999987 4678 88999764
Q ss_pred HH-----H-hhhCCCCCCCChhH-----HHHHHHHHhcCCceee----------------ccCCc--cCCCCCCCceecc
Q 023106 148 KE-----A-HARRGAPWTFNPLL-----LLNCLKNLRNQGSVYA----------------PSFDH--GVGDPVEDDILVG 198 (287)
Q Consensus 148 ~~-----~-~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~~----------------~~~~~--~~~~~~~~~LSgG 198 (287)
.. . ..+..+++.+|... .+++.+|+.++..... ..+.- ...++.+.+||||
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 429 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGG 429 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHH
Confidence 21 1 11334566666531 1588888875321100 01111 1236788999999
Q ss_pred ccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCC
Q 023106 199 LQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 199 ekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~ 251 (287)
|||||+| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+
T Consensus 430 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 509 (529)
T PRK15134 430 QRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGD 509 (529)
T ss_pred HHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcC
Confidence 9999988 8999999999 45666665532 24799999999876 544 78778888
Q ss_pred cHHHH
Q 023106 252 PPDVA 256 (287)
Q Consensus 252 ~~~~~ 256 (287)
++++.
T Consensus 510 ~~~~~ 514 (529)
T PRK15134 510 CERVF 514 (529)
T ss_pred HHHHh
Confidence 77764
No 258
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.5e-26 Score=225.50 Aligned_cols=168 Identities=15% Similarity=0.180 Sum_probs=122.6
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----H
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~ 150 (287)
++|+++|+++.|+ . +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 264 ~~l~~~~l~~~~~--~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 264 TVFEVRNVTSRDR--K----KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRSPLD 334 (510)
T ss_pred cEEEEeCccccCC--C----cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCCHHH
Confidence 4799999998763 2 8999999999999999999999999999999999999 9999 8999875421 1
Q ss_pred hhhCCCCCCCChh---H---HHHHHHHHhcCCcee------------e-----------ccCCc--cCCCCCCCceeccc
Q 023106 151 HARRGAPWTFNPL---L---LLNCLKNLRNQGSVY------------A-----------PSFDH--GVGDPVEDDILVGL 199 (287)
Q Consensus 151 ~~~~~~~~~~~~~---~---~~tv~e~l~~~~~~~------------~-----------~~~~~--~~~~~~~~~LSgGe 199 (287)
..+.++++.+|.. . .+++.+|+.+..... . ..+.- ...++++.+|||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 414 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGN 414 (510)
T ss_pred HHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHH
Confidence 1233455666541 1 268889887642110 0 00111 23467889999999
Q ss_pred cceEEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCc
Q 023106 200 QHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 200 kqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~ 252 (287)
||||.| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |+++..++.
T Consensus 415 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 415 QQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 999988 8999999999 44555555433 25799999999876 443 565555543
No 259
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.92 E-value=1.5e-26 Score=202.02 Aligned_cols=159 Identities=19% Similarity=0.192 Sum_probs=115.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA----- 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~----- 150 (287)
+|+++|+++.|++......+|+++||++.+|++++|+|+||||||||+++|+|+++ |++| +.++|.++...
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGASEKEL 77 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcCHhHH
Confidence 37899999999752111238999999999999999999999999999999999999 9999 88999876321
Q ss_pred -hhhCCCCCCCChhHH---HHHHHHHhcCCceeec---------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 151 -HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP---------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~---------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
..+.++.+.++...+ .++.+|+.+....... .+. ....++.+.+||+||+||++|
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 123445556655433 5778887654221100 000 012356789999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTA 238 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~ 238 (287)
.+|+++|||| .+++.|.++.+ .+|++|||++..
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~ 205 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL 205 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 8999999999 34555555442 246999999853
No 260
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-26 Score=207.98 Aligned_cols=174 Identities=16% Similarity=0.172 Sum_probs=127.1
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPKE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~~ 149 (287)
+++.++++++.|++.. +|+++||++++|+++||+|+||||||||+++|+|+++ | ++| +.++|+++..
T Consensus 7 ~~~~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 7 IVMDCKLDKIFYGNFM----AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND---LVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred ceEEEEeEEEEeCCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc---cccCCCCceEEEECCEeccc
Confidence 4689999999998765 9999999999999999999999999999999999997 6 689 8999986532
Q ss_pred -----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee--c-----------cCC--c---cCCCCCCCceeccccceEE
Q 023106 150 -----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA--P-----------SFD--H---GVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 -----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--~-----------~~~--~---~~~~~~~~~LSgGekqRv~ 204 (287)
...+..+.+.+|...+ .++.+|+.++..... . .+. . ...++.+..||+||+||++
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~ 159 (261)
T PRK14263 80 KGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLC 159 (261)
T ss_pred cccchHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 1223345555554322 688888876432110 0 000 0 0123567889999999998
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HH--H----------HHHhcCCC
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RV--L----------KRHISTGK 251 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rv--i----------gr~i~~G~ 251 (287)
| .+|+++|||| .+++.|.++.. ..|++|||++++.. |+ + |++++.|+
T Consensus 160 laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~ 239 (261)
T PRK14263 160 IARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGP 239 (261)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCC
Confidence 8 8999999999 45666665543 24699999998875 32 2 56667787
Q ss_pred cHHHH
Q 023106 252 PPDVA 256 (287)
Q Consensus 252 ~~~~~ 256 (287)
++++.
T Consensus 240 ~~~~~ 244 (261)
T PRK14263 240 TAQIF 244 (261)
T ss_pred HHHHH
Confidence 77664
No 261
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.7e-26 Score=226.09 Aligned_cols=167 Identities=12% Similarity=0.127 Sum_probs=122.0
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
++|+++||++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|..
T Consensus 318 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~~-------- 382 (530)
T PRK15064 318 NALEVENLTKGFDNGP----LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSENA-------- 382 (530)
T ss_pred ceEEEEeeEEeeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCce--------
Confidence 4799999999998765 8999999999999999999999999999999999999 9999 8787742
Q ss_pred CCCCCCChh-----HHHHHHHHHhcCCce---e------eccCC--ccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 155 GAPWTFNPL-----LLLNCLKNLRNQGSV---Y------APSFD--HGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 155 ~~~~~~~~~-----~~~tv~e~l~~~~~~---~------~~~~~--~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
.+++.+|.. ..+++.+++...... . ...+. ....++.+.+|||||||||+| .+|++|||
T Consensus 383 ~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllL 462 (530)
T PRK15064 383 NIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVM 462 (530)
T ss_pred EEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 122222221 114566666432100 0 00111 123467899999999999988 89999999
Q ss_pred ec-----------chHHHHHhccCCeEEEEcChHHHHH---HHH----HHHh-cCCCcHHHHH
Q 023106 214 DG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 257 (287)
Q Consensus 214 DE-----------~~~~~l~~~~~~~i~vtHd~~~~~~---rvi----gr~i-~~G~~~~~~~ 257 (287)
|| .+++.|.++...+|++|||++++.. |++ |+++ ..|++.++..
T Consensus 463 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 463 DEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 99 4555566553345799999999876 443 6666 5777766543
No 262
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=1.2e-26 Score=198.99 Aligned_cols=155 Identities=14% Similarity=0.136 Sum_probs=109.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
||+++|+++.|++.. ++ ++||+|++|+++||+|+||||||||+++|+|+++ |++| +.++|.++.... ...
T Consensus 1 ~l~~~~l~~~~~~~~----l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~-~~~ 71 (195)
T PRK13541 1 MLSLHQLQFNIEQKN----LF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIA-KPY 71 (195)
T ss_pred CeEEEEeeEEECCcE----EE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhh-hhh
Confidence 478999999997643 55 4999999999999999999999999999999999 9999 899998753321 111
Q ss_pred CCCCCCh---hHHHHHHHHHhcCCceee---------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec--
Q 023106 156 APWTFNP---LLLLNCLKNLRNQGSVYA---------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-- 215 (287)
Q Consensus 156 ~~~~~~~---~~~~tv~e~l~~~~~~~~---------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-- 215 (287)
+.+.++. ....++.+|+.+...... ..+. ....++.+..||+||+||+.| .+|+++||||
T Consensus 72 ~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~ 151 (195)
T PRK13541 72 CTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVE 151 (195)
T ss_pred EEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 2222222 122677788765321110 0111 122356788999999999988 8999999999
Q ss_pred ---------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 216 ---------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ---------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+++.+.+..+ ..+++|||++.+..
T Consensus 152 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 152 TNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 34444443222 24699999987654
No 263
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.92 E-value=2.1e-26 Score=226.43 Aligned_cols=164 Identities=14% Similarity=0.052 Sum_probs=118.2
Q ss_pred EEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
||+++||++.|+ +.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.+++..
T Consensus 4 ~i~~~nls~~~~~~~~----il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~~-------- 68 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKE----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAPGI-------- 68 (552)
T ss_pred EEEEeeEEEecCCCCe----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCCC--------
Confidence 799999999997 544 8999999999999999999999999999999999999 9999 7776521
Q ss_pred CCCCCCChhH---HHHHHHHHhcCCce---------------eec-----------------------------------
Q 023106 155 GAPWTFNPLL---LLNCLKNLRNQGSV---------------YAP----------------------------------- 181 (287)
Q Consensus 155 ~~~~~~~~~~---~~tv~e~l~~~~~~---------------~~~----------------------------------- 181 (287)
.+++.+|... .+++.+|+.++... ...
T Consensus 69 ~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 148 (552)
T TIGR03719 69 KVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMD 148 (552)
T ss_pred EEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHh
Confidence 1233333221 24666666543110 000
Q ss_pred cCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHH---HH
Q 023106 182 SFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ---RV 242 (287)
Q Consensus 182 ~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~---rv 242 (287)
.+.....++.+.+|||||||||+| .+|++||||| .+.+.|.++...+|+||||++.+.. ++
T Consensus 149 ~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v 228 (552)
T TIGR03719 149 ALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWI 228 (552)
T ss_pred hCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeE
Confidence 000011356789999999999988 8999999999 3445555554446799999999876 44
Q ss_pred H----HHHh-cCCCcHHH
Q 023106 243 L----KRHI-STGKPPDV 255 (287)
Q Consensus 243 i----gr~i-~~G~~~~~ 255 (287)
+ |+++ ..|+..++
T Consensus 229 ~~l~~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 229 LELDRGRGIPWEGNYSSW 246 (552)
T ss_pred EEEECCEEEEecCCHHHH
Confidence 4 6654 56776653
No 264
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1e-26 Score=206.99 Aligned_cols=175 Identities=15% Similarity=0.142 Sum_probs=123.2
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc-c-CCCcc-eeeCCCCHHHH----
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-I-WPQKA-SSFDSQDPKEA---- 150 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~-~-~p~~G-i~~~g~~~~~~---- 150 (287)
-+++||++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|++.. + .|++| +.++|.++...
T Consensus 6 ~~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 6 ASVKNLNLWYGSKQ----ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EEeeeEEEEECCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 46899999997655 89999999999999999999999999999999999741 0 13689 89999765321
Q ss_pred -hhhCCCCCCCChhHH--HHHHHHHhcCCceee----------------ccCCc-----cCCCCCCCceeccccceEEE-
Q 023106 151 -HARRGAPWTFNPLLL--LNCLKNLRNQGSVYA----------------PSFDH-----GVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~----------------~~~~~-----~~~~~~~~~LSgGekqRv~I- 205 (287)
..+.++.+.+|...+ .++.+|+.+...... ..+.- ...++.+..|||||+||++|
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 161 (251)
T PRK14244 82 VLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161 (251)
T ss_pred HHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence 123345555554322 367777765311100 00000 01245678999999999998
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+++.|.++.. .+|++|||++++.. |++ |++++.|++.++.
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 8999999999 34555555432 24799999998875 444 7777778776653
No 265
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.92 E-value=4.2e-26 Score=229.90 Aligned_cols=177 Identities=16% Similarity=0.160 Sum_probs=134.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ..+|+|+||+|++|+.+||+|+||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 463 ~I~~~~vsf~Y~~~~--~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~l~~~~~~~l 537 (694)
T TIGR03375 463 EIEFRNVSFAYPGQE--TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADL 537 (694)
T ss_pred eEEEEEEEEEeCCCC--ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence 599999999996421 138999999999999999999999999999999999999 9999 99999876542 23
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCc-eeec----------------cCCcc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGS-VYAP----------------SFDHG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~-~~~~----------------~~~~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|+..+ .|+.||+.++.. .... ....+ .-......||||||||++|
T Consensus 538 r~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall 617 (694)
T TIGR03375 538 RRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL 617 (694)
T ss_pred HhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence 4456677776654 699999988643 1000 00000 0112346799999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|+++|||| .+.+.+.++.+ ..|+|||+++.+.. |++ |++++.|+.+++...
T Consensus 618 ~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 618 RDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 8999999999 45556666543 35799999998866 554 888899998887543
No 266
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.92 E-value=3.7e-26 Score=225.90 Aligned_cols=177 Identities=18% Similarity=0.216 Sum_probs=132.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ..+|+|+||+|++|+.+||+|+||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 341 ~i~~~~vsf~y~~~~--~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~ 415 (582)
T PRK11176 341 DIEFRNVTFTYPGKE--VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTLASL 415 (582)
T ss_pred eEEEEEEEEecCCCC--CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCHHHH
Confidence 499999999996521 128999999999999999999999999999999999999 9999 99999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCc--eee----------------ccCCccC---CCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGS--VYA----------------PSFDHGV---GDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~--~~~----------------~~~~~~~---~~~~~~~LSgGekqRv~I---- 205 (287)
+..+.+.+|+..+ .|+.+|+.++.. ... ..+..+. .......||||||||++|
T Consensus 416 ~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARal 495 (582)
T PRK11176 416 RNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_pred HhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 3346666666543 689999987531 100 0011111 012345699999999998
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|+++|||| .+.+.+.++.. .+|+|||+++.+.. +++ |++++.|+.+++...
T Consensus 496 l~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 496 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred HhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 8999999999 45566666543 35799999988876 555 788899998888643
No 267
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.92 E-value=2.1e-26 Score=195.21 Aligned_cols=139 Identities=22% Similarity=0.305 Sum_probs=102.9
Q ss_pred EecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---HhhhC
Q 023106 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHARR 154 (287)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~~ 154 (287)
+++||++.|++.. +|+++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. .....
T Consensus 1 ~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~ 73 (180)
T cd03214 1 EVENLSVGYGGRT----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLASLSPKELAR 73 (180)
T ss_pred CeeEEEEEECCee----eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCcCCHHHHHH
Confidence 4688999997654 8999999999999999999999999999999999999 9999 8899875421 11112
Q ss_pred CCCCCCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chH
Q 023106 155 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVW 218 (287)
Q Consensus 155 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~ 218 (287)
.+.+.+| .++.+.+. ...++.+..||+||+||++| .+|+++|||| .+.
T Consensus 74 ~i~~~~q------~l~~~gl~----------~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~ 137 (180)
T cd03214 74 KIAYVPQ------ALELLGLA----------HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL 137 (180)
T ss_pred HHhHHHH------HHHHcCCH----------hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 2333333 11211111 11235678999999999988 8999999999 344
Q ss_pred HHHHhccC----CeEEEEcChHHHHH
Q 023106 219 KDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 219 ~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+.+.++.+ ..|++||+++++..
T Consensus 138 ~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 138 ELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 55555433 24799999998764
No 268
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.92 E-value=1.8e-26 Score=202.22 Aligned_cols=164 Identities=16% Similarity=0.173 Sum_probs=115.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
++.++||+++|.+......+|+++||+|++|++++|+||||||||||+++|+|+++...|++| +.++|.++.....+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 578999999996531012389999999999999999999999999999999999751114788 8899976543333444
Q ss_pred CCCCCChhHH---HHHHHHHhcCCceeec---------------cCC----ccCCCCCCCceeccccceEEE-----ecC
Q 023106 156 APWTFNPLLL---LNCLKNLRNQGSVYAP---------------SFD----HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 156 ~~~~~~~~~~---~tv~e~l~~~~~~~~~---------------~~~----~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
+.+.+|...+ +++.+|+.+....... ..+ ....++.+..||+||+|||+| .+|
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 162 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCC
Confidence 5555554332 5888888753211100 000 012356788999999999988 899
Q ss_pred CEEeEec-----------chHHHHHhccC---CeEEEEcCh-HHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD---EKWFIEVDL-DTAMQ 240 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~-~~~~~ 240 (287)
+++|||| .+++.+.++.+ ..+++||++ +++..
T Consensus 163 ~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~ 209 (226)
T cd03234 163 KVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFR 209 (226)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHH
Confidence 9999999 45555555433 246999998 45554
No 269
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.92 E-value=1.3e-26 Score=197.97 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=102.0
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----HhhhCCCCCCCChhH----H
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----AHARRGAPWTFNPLL----L 165 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~~~~~~~~~~~~~~~----~ 165 (287)
+|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...+.++.+.+|... .
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 8999999999999999999999999999999999999 9999 8899876421 122334555555431 1
Q ss_pred HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec----------
Q 023106 166 LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG---------- 215 (287)
Q Consensus 166 ~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE---------- 215 (287)
.++.+|+.+...... . .+. ....++.+.+|||||+||++| .+|+++||||
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 588888876321100 0 000 112367889999999999988 8999999999
Q ss_pred -chHHHHHhccC---CeEEEEcChHH
Q 023106 216 -GVWKDVSSMFD---EKWFIEVDLDT 237 (287)
Q Consensus 216 -~~~~~l~~~~~---~~i~vtHd~~~ 237 (287)
.+++.|.++.+ .++++|||+++
T Consensus 164 ~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 164 EQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHcCCEEEEEeecccc
Confidence 45555555432 24699999875
No 270
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.92 E-value=4.4e-26 Score=203.71 Aligned_cols=178 Identities=16% Similarity=0.165 Sum_probs=124.5
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--- 150 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--- 150 (287)
+..|+++|+++.|++.. ..+|+++||+|++|+++||+|+||||||||+++|+|+++ |++| +.++|.++...
T Consensus 17 ~~~i~~~~l~~~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~~ 91 (257)
T cd03288 17 GGEIKIHDLCVRYENNL--KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKLPLH 91 (257)
T ss_pred CceEEEEEEEEEeCCCC--CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhCCHH
Confidence 34699999999997521 128999999999999999999999999999999999999 9999 89999865431
Q ss_pred hhhCCCCCCCChhHH--HHHHHHHhcCCceee---------ccCC----------ccCCCCCCCceeccccceEEE----
Q 023106 151 HARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---------PSFD----------HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---------~~~~----------~~~~~~~~~~LSgGekqRv~I---- 205 (287)
..+..+.+.+|...+ .++.+|+........ .... ....+..+..||+||+||++|
T Consensus 92 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral 171 (257)
T cd03288 92 TLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAF 171 (257)
T ss_pred HHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHH
Confidence 122334444443222 466666654211000 0000 001234567899999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+++.+.++... .|++||+++.+.. |++ |++++.|+++++..
T Consensus 172 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 172 VRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 8999999999 344445443222 4699999999876 443 77777888777643
No 271
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.92 E-value=8e-27 Score=205.94 Aligned_cols=142 Identities=17% Similarity=0.221 Sum_probs=100.0
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH--hhhCCCCCCC-Ch---hHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--HARRGAPWTF-NP---LLLLNC 168 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--~~~~~~~~~~-~~---~~~~tv 168 (287)
+|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++| +.++|.++... ..+..+.+.+ +. ...+++
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 8999999999999999999999999999999999999 9999 88888754221 1122233333 11 112566
Q ss_pred HHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------ch
Q 023106 169 LKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GV 217 (287)
Q Consensus 169 ~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~ 217 (287)
.+++.+...... ..+. ....++.+..|||||+||+.| .+|+++|||| .+
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 192 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 677654221100 0000 112356788999999999988 8999999999 45
Q ss_pred HHHHHhccC----CeEEEEcChHHHHH
Q 023106 218 WKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 218 ~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.+.|.++.+ .+|++|||++++..
T Consensus 193 ~~~l~~~~~~~~~tiiivsH~~~~~~~ 219 (236)
T cd03267 193 RNFLKEYNRERGTTVLLTSHYMKDIEA 219 (236)
T ss_pred HHHHHHHHhcCCCEEEEEecCHHHHHH
Confidence 555655532 24699999998764
No 272
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1e-26 Score=203.95 Aligned_cols=168 Identities=19% Similarity=0.275 Sum_probs=131.3
Q ss_pred CchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-------hhh
Q 023106 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-------HAR 153 (287)
Q Consensus 82 ~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-------~~~ 153 (287)
|+.+.+|+. +| +++|.++...++||-|+||||||||+|+|+|+.. |+.| |.++|....+. ..+
T Consensus 5 ~~~~~lG~~-----~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~ 75 (352)
T COG4148 5 NFRQRLGNF-----AL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEK 75 (352)
T ss_pred ehhhhcCce-----EE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhh
Confidence 356667664 33 6899999888999999999999999999999999 9999 88998743221 234
Q ss_pred CCCCCCCChhHH---HHHHHHHhcCCcee-eccCCc--------cCCCCCCCceeccccceEEE-----ecCCEEeEec-
Q 023106 154 RGAPWTFNPLLL---LNCLKNLRNQGSVY-APSFDH--------GVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG- 215 (287)
Q Consensus 154 ~~~~~~~~~~~~---~tv~e~l~~~~~~~-~~~~~~--------~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE- 215 (287)
+.++|+||+..+ ++|..|+.++.... ...|+. ...+++|..|||||||||+| ..|++|||||
T Consensus 76 RriGYVFQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEP 155 (352)
T COG4148 76 RRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEP 155 (352)
T ss_pred heeeeEeeccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCc
Confidence 558899998775 89999999986554 223332 13478999999999999999 8999999999
Q ss_pred ----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 216 ----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 216 ----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
+++..++.+.++ .+||||.++++.+ +++ |++.+.|+.+++...
T Consensus 156 LaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 156 LASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred hhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 555555555554 3699999999997 544 788889998888443
No 273
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=8.7e-26 Score=213.32 Aligned_cols=174 Identities=17% Similarity=0.186 Sum_probs=136.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||++.|+++. ++|+++||+|++|+.|||+|+|||||||++|+|.+.+. .+| |.+||+++... -.
T Consensus 351 ~I~F~dV~f~y~~k~---~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d----~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKR---KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD----YSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred cEEEEeeEEEeCCCC---ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc----cCCcEEECCeeHhhhChHHh
Confidence 499999999998765 39999999999999999999999999999999999985 678 99999998654 23
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-----------------ccCCcc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-----------------PSFDHG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-----------------~~~~~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
++-+++++|+..+ .|++.||.++..-.. ..+..+ ..-.....|||||||||+|
T Consensus 424 R~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~l 503 (591)
T KOG0057|consen 424 RQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFL 503 (591)
T ss_pred hhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHh
Confidence 4446777777654 799999998743210 011111 1123456799999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++++|| ++++.+.+.... .|+|-|+++++.. +++ |++.+.|+..+++.
T Consensus 504 Kda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 504 KDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred cCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 8999999999 566666664433 4799999999998 666 78888899888765
No 274
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.92 E-value=4.2e-26 Score=208.75 Aligned_cols=178 Identities=20% Similarity=0.286 Sum_probs=138.9
Q ss_pred ccEEEecCchhhhhhh-------hhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 75 IPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~-------~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.+++++++|...|.-+ .....+++++||++.+|+-+||+|.+|||||||-++|.++++ +. | |.|+|++
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~---s~-G~I~F~G~~ 349 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP---SQ-GEIRFDGQD 349 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC---cC-ceEEECCcc
Confidence 3489999999888422 223568999999999999999999999999999999999997 65 7 9999987
Q ss_pred HHHH------hhhCCCCCCCChhHH-----HHHHHHHhcCCceeeccCCc------------------cCCCCCCCceec
Q 023106 147 PKEA------HARRGAPWTFNPLLL-----LNCLKNLRNQGSVYAPSFDH------------------GVGDPVEDDILV 197 (287)
Q Consensus 147 ~~~~------~~~~~~~~~~~~~~~-----~tv~e~l~~~~~~~~~~~~~------------------~~~~~~~~~LSg 197 (287)
+... ..+..+..+||++.- +++.+.|..+..++.+..+. ...++||+++||
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG 429 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG 429 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence 6321 223335556665431 78888888887766544332 234799999999
Q ss_pred cccceEEE-----ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCC
Q 023106 198 GLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 198 GekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G 250 (287)
||+||++| .+|.+++||| .++++++++.+. -+|||||+..+.. +++ |+++++|
T Consensus 430 GQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G 509 (534)
T COG4172 430 GQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQG 509 (534)
T ss_pred chhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeC
Confidence 99999998 8999999999 456666665443 2699999999977 554 8999999
Q ss_pred CcHHHH
Q 023106 251 KPPDVA 256 (287)
Q Consensus 251 ~~~~~~ 256 (287)
+.+++.
T Consensus 510 ~~~~if 515 (534)
T COG4172 510 PTEAVF 515 (534)
T ss_pred CHHHHh
Confidence 999885
No 275
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.92 E-value=1.7e-26 Score=249.07 Aligned_cols=178 Identities=15% Similarity=0.164 Sum_probs=134.3
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--Hhh
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHA 152 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~ 152 (287)
.+|+++||+|.|++. ...+|+|+||+|++||++||+||||||||||+|+|+|+++ |++| +.++|.++.. ...
T Consensus 1936 ~~L~v~nLsK~Y~~~--~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~~~~~~~ 2010 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSILTNISDV 2010 (2272)
T ss_pred ceEEEEEEEEEECCC--CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECcchHHHH
Confidence 479999999999752 1129999999999999999999999999999999999999 9999 8999987532 112
Q ss_pred hCCCCCCCChhH---HHHHHHHHhcCCceee-cc-------------CC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLL---LLNCLKNLRNQGSVYA-PS-------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~~-------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
++.+++.+|... .+++.|++.+...+.. +. +. ....++.+.+|||||||||.| .+|+
T Consensus 2011 r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~ 2090 (2272)
T TIGR01257 2011 HQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP 2090 (2272)
T ss_pred hhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 333555555433 2788888876432211 00 00 113467899999999999987 8999
Q ss_pred EEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
++|||| .+++.|.++.+. +|++||+++++.. |++ |+++..|+++++...
T Consensus 2091 VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2091 LVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999 566767665432 4699999999986 544 788888888887544
No 276
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.92 E-value=6.5e-26 Score=228.94 Aligned_cols=177 Identities=18% Similarity=0.190 Sum_probs=130.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ...+|+|+||+|++|++++|+||||||||||+++|+|+++ |++| |.+||.++... ..
T Consensus 478 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 478 LIEFQDVSFSYPNRP-DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred eEEEEEEEEECCCCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHHH
Confidence 599999999997532 1238999999999999999999999999999999999999 9999 99999887542 23
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-----------------ccCCccCC---CCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-----------------PSFDHGVG---DPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-----------------~~~~~~~~---~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|++.+ .|+.||+.++..-.. ..+..+.. ......||||||||++|
T Consensus 554 r~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 554 HRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred HhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 3445666665543 689999987632100 00111111 12345799999999998
Q ss_pred ecCCEEeEec-------chHHHHHh---ccC-CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-------GVWKDVSS---MFD-EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-------~~~~~l~~---~~~-~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| +..+.+.+ ..+ ..|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 8999999999 22222222 122 24799999998876 554 88889999888754
No 277
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.91 E-value=7.2e-26 Score=228.64 Aligned_cols=175 Identities=17% Similarity=0.204 Sum_probs=131.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
-|+++||+++|++.. .+|+|+||+|++|+.+||+|+||||||||+++|+|++. |++| +.++|.++... ..
T Consensus 473 ~I~~~~vsf~y~~~~---~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 473 DIVINDVSYSYGYGS---NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred cEEEEEEEEEcCCCC---cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHHHH
Confidence 499999999997421 38999999999999999999999999999999999999 9999 99999887542 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec-----------c-------CCccC---CCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP-----------S-------FDHGV---GDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-----------~-------~~~~~---~~~~~~~LSgGekqRv~I---- 205 (287)
+..+.+++|+..+ .|+.||+.++...... . +..+. .......||||||||++|
T Consensus 547 r~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARal 626 (708)
T TIGR01193 547 RQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARAL 626 (708)
T ss_pred HHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHH
Confidence 3446666666543 6999999986211000 0 00011 122456799999999999
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC-eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE-KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~-~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+.+.|.++.+. .|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 627 l~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 627 LTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred hhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 455556554333 4799999998866 554 88889999888754
No 278
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.91 E-value=7.4e-26 Score=223.23 Aligned_cols=174 Identities=19% Similarity=0.252 Sum_probs=134.2
Q ss_pred EEEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---h
Q 023106 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---H 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~ 151 (287)
-|+++||++.|++ .. +|+|+||++++|+.+||+||||||||||+++|.++++ |++| |.+||.++... .
T Consensus 328 ~I~f~~vsf~y~~~~~----vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 328 SIEFENVSFSYPGKKP----VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred eEEEEEEEEEcCCCCc----cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCEehhhcCHHH
Confidence 4999999999984 45 9999999999999999999999999999999999999 9999 88899887542 2
Q ss_pred hhCCCCCCCChhHH--HHHHHHHhcCCceee--------------------c-cCCccCCCCCCCceeccccceEEE---
Q 023106 152 ARRGAPWTFNPLLL--LNCLKNLRNQGSVYA--------------------P-SFDHGVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--------------------~-~~~~~~~~~~~~~LSgGekqRv~I--- 205 (287)
.+..++.++|+..+ -|+.+|+.++..-.. | .++... ......||||||||++|
T Consensus 401 lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~v-ge~G~~LSgGQrQrlaiARa 479 (567)
T COG1132 401 LRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIV-GERGVNLSGGQRQRLAIARA 479 (567)
T ss_pred HHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccee-cCCCccCCHHHHHHHHHHHH
Confidence 23445566666544 689999998853100 0 011111 12345799999999998
Q ss_pred --ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|++|+||| .+.+.+.++.+ .+++|+|.+..+.. +++ |++++.|+.+++...
T Consensus 480 ll~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 480 LLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred HhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence 8999999999 34455544443 35799999999987 555 898999999998764
No 279
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=7.8e-26 Score=195.17 Aligned_cols=150 Identities=12% Similarity=0.170 Sum_probs=105.4
Q ss_pred EEecCchhhhhhhhh-ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~~-~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
|+++||++.|++..+ ...+|+++||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g~---------- 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPGS---------- 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcCE----------
Confidence 478999999976410 0128999999999999999999999999999999999999 9999 888881
Q ss_pred CCCCCChhH--HHHHHHHHhcCCceeec----------------cCC---ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 156 APWTFNPLL--LLNCLKNLRNQGSVYAP----------------SFD---HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 156 ~~~~~~~~~--~~tv~e~l~~~~~~~~~----------------~~~---~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
+.+.++... ..++.+|+.+....... ... ....+..+..||+||+||++| .+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 222222221 14677777654221100 000 011234578899999999998 8999
Q ss_pred EEeEec-----------chHHH-HHhccCC---eEEEEcChHHHHH
Q 023106 210 YLFLDG-----------GVWKD-VSSMFDE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 210 lLllDE-----------~~~~~-l~~~~~~---~i~vtHd~~~~~~ 240 (287)
++|||| .+++. +.+..+. +|++||+++.+..
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence 999999 23342 3333222 4699999988764
No 280
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.91 E-value=9.9e-26 Score=222.65 Aligned_cols=176 Identities=19% Similarity=0.209 Sum_probs=131.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||++.|++.. ..+|+|+||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 338 ~i~~~~v~f~y~~~~--~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~~~~~ 412 (574)
T PRK11160 338 SLTLNNVSFTYPDQP--QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYSEAAL 412 (574)
T ss_pred eEEEEEEEEECCCCC--CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence 599999999996521 128999999999999999999999999999999999999 9999 99999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-------------ccC---CccCC---CCCCCceeccccceEEE-----e
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-------------PSF---DHGVG---DPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-------------~~~---~~~~~---~~~~~~LSgGekqRv~I-----~ 206 (287)
+..+.+++|+..+ .|+.+|+.++..-.. ..+ ..+.. ......||||||||++| .
T Consensus 413 r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~ 492 (574)
T PRK11160 413 RQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH 492 (574)
T ss_pred HhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 3345566665544 688999987532100 000 00001 12456799999999998 9
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+|+++|||| .+.+.+.++.+. +|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 493 ~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 493 DAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999 455566655433 5799999998876 544 88888999888754
No 281
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.91 E-value=8.2e-26 Score=223.97 Aligned_cols=174 Identities=17% Similarity=0.236 Sum_probs=131.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
-|+++|+++.|++.. .+|+|+||++++|+++||+|+||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 340 ~i~~~~v~f~y~~~~---~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 340 RIDIDNVSFAYRDDN---LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred eEEEEEEEEEeCCCC---ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHHHH
Confidence 499999999996421 38999999999999999999999999999999999999 9999 99999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec----------------cCCccC---CCCCCCceeccccceEEE-----e
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP----------------SFDHGV---GDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~----------------~~~~~~---~~~~~~~LSgGekqRv~I-----~ 206 (287)
+..+.+.+|+..+ -|+.+|+.++...... ....+. .......|||||+||++| .
T Consensus 414 ~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~ 493 (592)
T PRK10790 414 RQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ 493 (592)
T ss_pred HhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 3345556665543 5889999886421000 000011 112356799999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
+|+++|||| .+.+.+.++.. .+|+|||+++.+.. +++ |++++.|+.+++.
T Consensus 494 ~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 494 TPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999 45555665543 35799999988877 555 8888999999875
No 282
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.91 E-value=1.8e-25 Score=198.32 Aligned_cols=172 Identities=19% Similarity=0.147 Sum_probs=114.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCcc-eeeCCCCHHH----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll--~~~~p~~G-i~~~g~~~~~---- 149 (287)
||+++||++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|++ + |++| +.++|.++..
T Consensus 1 ~i~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 1 MLSIKDLHVSVEDKA----ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred CeEEEEEEEEeCCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC---CCceEEEECCCccccCCHH
Confidence 488999999998755 999999999999999999999999999999999994 7 8899 8899976532
Q ss_pred HhhhCCCCCCCChhHH---HHHHHH-------HhcCCcee-ec---------------cCCccCCCCCCC-ceeccccce
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKN-------LRNQGSVY-AP---------------SFDHGVGDPVED-DILVGLQHK 202 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~-------l~~~~~~~-~~---------------~~~~~~~~~~~~-~LSgGekqR 202 (287)
...+.++.+.++.... .+...+ +....... .. .......++.+. .|||||+||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHH
Confidence 1122334444443221 122222 11110000 00 000111234443 799999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH----HHH----HHHhcCCCcHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPPDV 255 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~----rvi----gr~i~~G~~~~~ 255 (287)
|+| .+|++||||| .+.+.+.++.+ .+|++|||++++.. +++ |+++..|+++.+
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 988 8999999999 34444444433 24699999998764 222 666677776643
No 283
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.91 E-value=1.6e-25 Score=217.72 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=115.6
Q ss_pred cEEEecCchhhhh---hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-Ccc-eeeCCCCHHH-
Q 023106 76 PVVEARCMDEVYD---ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKA-SSFDSQDPKE- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~---~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-~~G-i~~~g~~~~~- 149 (287)
++|+++|+++.|+ +.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ | ++| +.++|.++..
T Consensus 256 ~~l~~~~l~~~~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~~~ 328 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRK----RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVDIR 328 (500)
T ss_pred ceEEEeCCccccccccccc----ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECCCC
Confidence 3799999999993 333 8999999999999999999999999999999999997 7 789 8899875421
Q ss_pred ---HhhhCCCCCCCChhH------HHHHHHHHhcCCc--ee----e-------------ccCCc--cCCCCCCCceeccc
Q 023106 150 ---AHARRGAPWTFNPLL------LLNCLKNLRNQGS--VY----A-------------PSFDH--GVGDPVEDDILVGL 199 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~------~~tv~e~l~~~~~--~~----~-------------~~~~~--~~~~~~~~~LSgGe 199 (287)
...+.++++.+|... .+++.+|+.+... .. . ..+.- ...++++.+|||||
T Consensus 329 ~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 408 (500)
T TIGR02633 329 NPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGN 408 (500)
T ss_pred CHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHH
Confidence 122344555555531 1577777765321 00 0 01111 12367889999999
Q ss_pred cceEEE-----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH
Q 023106 200 QHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 200 kqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~ 240 (287)
||||+| .+|++||||| .+++.+.++.+. +|++|||++++..
T Consensus 409 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~ 468 (500)
T TIGR02633 409 QQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLG 468 (500)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence 999988 8999999999 344445554332 4799999999976
No 284
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.91 E-value=9.1e-26 Score=223.45 Aligned_cols=173 Identities=16% Similarity=0.265 Sum_probs=128.6
Q ss_pred EEEecCchhhh-hhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hh
Q 023106 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AH 151 (287)
Q Consensus 77 ~i~~~~l~~~y-~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~ 151 (287)
-|+++||++.| ++.. +|+|+||+|++|+++||+||||||||||+++|+|++ |++| |.++|.++.. ..
T Consensus 349 ~i~~~~vsf~~~~~~~----vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~ 420 (588)
T PRK11174 349 TIEAEDLEILSPDGKT----LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPES 420 (588)
T ss_pred eEEEEeeEEeccCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHH
Confidence 49999999655 4433 899999999999999999999999999999999987 4688 9999987543 22
Q ss_pred hhCCCCCCCChhHH--HHHHHHHhcCCc-eeec----------------cCCccCC---CCCCCceeccccceEEE----
Q 023106 152 ARRGAPWTFNPLLL--LNCLKNLRNQGS-VYAP----------------SFDHGVG---DPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~-~~~~----------------~~~~~~~---~~~~~~LSgGekqRv~I---- 205 (287)
.+..+.+++|+..+ .|+.|||.++.. .... .+..+.. ......||||||||++|
T Consensus 421 lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAl 500 (588)
T PRK11174 421 WRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARAL 500 (588)
T ss_pred HHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHH
Confidence 23446666666544 689999998732 1000 0101111 12345799999999999
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+.+.+.++.+ .+|+|||.++.+.. +++ |++++.|+.+++..
T Consensus 501 l~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 501 LQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 8999999999 45556666543 25799999988876 554 88889999888864
No 285
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.91 E-value=3e-26 Score=201.54 Aligned_cols=153 Identities=18% Similarity=0.279 Sum_probs=106.9
Q ss_pred ccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhH---HHHHHHHH
Q 023106 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLL---LLNCLKNL 172 (287)
Q Consensus 97 l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~---~~tv~e~l 172 (287)
|+++||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++....... .+.+|... .+++.+|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~--~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDR--MVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhh--eEEecCcccCCCCCHHHHH
Confidence 578999999999999999999999999999999999 9999 889987643211111 23333222 25777887
Q ss_pred hcCCc--ee-ec-------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHH
Q 023106 173 RNQGS--VY-AP-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWK 219 (287)
Q Consensus 173 ~~~~~--~~-~~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~ 219 (287)
.+... .. .. .+. ....++.+.+|||||||||.| .+|+++|||| .+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 155 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQE 155 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 65311 00 00 000 012357889999999999988 8999999999 4555
Q ss_pred HHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 220 DVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 220 ~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
.|.++.+ .+|++|||++++.. |++ |+++..|...+
T Consensus 156 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 156 ELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCcee
Confidence 5655532 24799999998865 443 66666665443
No 286
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.91 E-value=4.8e-26 Score=245.51 Aligned_cols=176 Identities=17% Similarity=0.224 Sum_probs=134.5
Q ss_pred cEEEecCchhhhh--hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH--
Q 023106 76 PVVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-- 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~--~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-- 150 (287)
..|+++||+|.|+ ++. +|+|+||++.+|+++||+||||||||||+++|+|+++ |++| +.++|.++...
T Consensus 927 ~~L~I~nLsK~y~~~~k~----aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~~~~ 999 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRP----AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIETNLD 999 (2272)
T ss_pred ceEEEEeEEEEecCCCce----EEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcchHH
Confidence 4799999999995 333 8999999999999999999999999999999999999 9999 88999865321
Q ss_pred hhhCCCCCCCChhH---HHHHHHHHhcCCceeecc--------------CC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 151 HARRGAPWTFNPLL---LLNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 151 ~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
..++.+++.+|... .+|+.|++.+...+.... +. ....++.+.+|||||||||+| .+
T Consensus 1000 ~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~ 1079 (2272)
T TIGR01257 1000 AVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGD 1079 (2272)
T ss_pred HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 22334555555433 278999987753322100 00 113367899999999999988 89
Q ss_pred CCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
|+++|||| .+++.|+++.+. +|++|||++++.. |++ |+++..|++..+...
T Consensus 1080 PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1080 AKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999 567777776433 4699999999976 544 788888988877543
No 287
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.91 E-value=1.7e-25 Score=183.15 Aligned_cols=115 Identities=19% Similarity=0.260 Sum_probs=94.7
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGA 156 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~ 156 (287)
|+++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++| +.++|.. .+
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~--------~i 65 (144)
T cd03221 1 IELENLSKTYGGKL----LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV--------KI 65 (144)
T ss_pred CEEEEEEEEECCce----EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE--------EE
Confidence 46889999997654 8999999999999999999999999999999999999 9999 8888731 12
Q ss_pred CCCCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHH
Q 023106 157 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKD 220 (287)
Q Consensus 157 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~ 220 (287)
.+.++ ||+||+||++| .+|+++|+|| .+.+.
T Consensus 66 ~~~~~---------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~ 112 (144)
T cd03221 66 GYFEQ---------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEA 112 (144)
T ss_pred EEEcc---------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 22222 99999999988 8999999999 44555
Q ss_pred HHhccCCeEEEEcChHHHHH
Q 023106 221 VSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 221 l~~~~~~~i~vtHd~~~~~~ 240 (287)
++++....+++||+.+++..
T Consensus 113 l~~~~~til~~th~~~~~~~ 132 (144)
T cd03221 113 LKEYPGTVILVSHDRYFLDQ 132 (144)
T ss_pred HHHcCCEEEEEECCHHHHHH
Confidence 55553345799999998854
No 288
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.91 E-value=1.4e-25 Score=222.13 Aligned_cols=174 Identities=23% Similarity=0.291 Sum_probs=130.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. .+|+|+||++++|++++|+|+||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 334 ~I~~~~vsf~y~~~~---~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~~~~ 407 (588)
T PRK13657 334 AVEFDDVSFSYDNSR---QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTRASL 407 (588)
T ss_pred eEEEEEEEEEeCCCC---ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCHHHH
Confidence 599999999997522 28999999999999999999999999999999999999 9999 89999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCc-eeec----------------cCCccCC---CCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGS-VYAP----------------SFDHGVG---DPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~-~~~~----------------~~~~~~~---~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|.+.+ .|+.+|+.++.. .... ..+.+.. ......|||||+||++|
T Consensus 408 r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall 487 (588)
T PRK13657 408 RRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALL 487 (588)
T ss_pred HhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 3346666666544 689999988632 1000 0111111 12345699999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+++.+.++.+ .+|+|||+.+.+.. +++ |++++.|+.+++.
T Consensus 488 ~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 488 KDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 8999999999 45566666543 35799999988766 554 7888889888775
No 289
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.91 E-value=3.2e-25 Score=217.00 Aligned_cols=153 Identities=20% Similarity=0.233 Sum_probs=115.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH--hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--HAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--~~~ 153 (287)
.|+++||+++|++.. .+|+|+||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..+
T Consensus 334 ~I~~~~vsf~Y~~~~---~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~lr 407 (529)
T TIGR02868 334 TLELRDLSFGYPGSP---PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDELR 407 (529)
T ss_pred eEEEEEEEEecCCCC---ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHHHH
Confidence 499999999997532 28999999999999999999999999999999999999 9999 99999876543 223
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCcee-ec----------------cCCccCC---CCCCCceeccccceEEE-----e
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVY-AP----------------SFDHGVG---DPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~-~~----------------~~~~~~~---~~~~~~LSgGekqRv~I-----~ 206 (287)
..+.+++|++.+ -|+.||+.++..-. .. ....+.. ......||||||||++| .
T Consensus 408 ~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~ 487 (529)
T TIGR02868 408 RRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA 487 (529)
T ss_pred hheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc
Confidence 446677777654 68999999863210 00 0000111 12345699999999998 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcCh
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDL 235 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~ 235 (287)
+|+++|||| .+.+.+.++... +|+|||++
T Consensus 488 ~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 488 DAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999 455666665433 57999974
No 290
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.9e-25 Score=190.27 Aligned_cols=178 Identities=20% Similarity=0.233 Sum_probs=125.3
Q ss_pred ccEEEecCchhhhhhh-hhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---
Q 023106 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~-~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--- 149 (287)
|.+|+++||+.+.+++ . +|++|||+|++||+++|+||||||||||.+.|+|.-. .-+++| |.++|+++..
T Consensus 1 m~~L~I~dLhv~v~~~ke----ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~-Y~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 1 MMMLEIKDLHVEVEGKKE----ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELSP 75 (251)
T ss_pred CceeEEeeeEEEecCchh----hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC-ceEecceEEECCcccccCCH
Confidence 4589999999999874 5 9999999999999999999999999999999999752 126789 9999998643
Q ss_pred -HhhhCCCCCCCChhHH---HHHHHHHhcCCce------eec-------------cCCccCCCCCC-CceeccccceEEE
Q 023106 150 -AHARRGAPWTFNPLLL---LNCLKNLRNQGSV------YAP-------------SFDHGVGDPVE-DDILVGLQHKVVI 205 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~------~~~-------------~~~~~~~~~~~-~~LSgGekqRv~I 205 (287)
.+.+.|+...||.+.- .++.+.+...... ..+ .++....+|.+ ..+|||||+|..|
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Ei 155 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEI 155 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHH
Confidence 3667777667765531 2333333221100 001 11122233443 3589999999766
Q ss_pred -----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH------HHH--HHHhcCCCcHHHHHH
Q 023106 206 -----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ------RVL--KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 -----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~------rvi--gr~i~~G~~~~~~~~ 258 (287)
.+|++.|||| .+-+.+..+.+. .++|||....+.. .++ ||++..|.+ +++..
T Consensus 156 lQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~~ 234 (251)
T COG0396 156 LQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAEE 234 (251)
T ss_pred HHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHHH
Confidence 9999999999 222233333333 4799999988876 222 999999999 66543
No 291
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.91 E-value=2.8e-25 Score=218.67 Aligned_cols=150 Identities=18% Similarity=0.192 Sum_probs=114.0
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
++|+++||++.|+++. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| |.+++ ..
T Consensus 323 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~-~~------- 387 (556)
T PRK11819 323 KVIEAENLSKSFGDRL----LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKIGE-TV------- 387 (556)
T ss_pred eEEEEEeEEEEECCee----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECC-ce-------
Confidence 4799999999998765 9999999999999999999999999999999999999 9999 77643 22
Q ss_pred CCCCCCChh-H---HHHHHHHHhcCCceee------------ccCCc--cCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 155 GAPWTFNPL-L---LLNCLKNLRNQGSVYA------------PSFDH--GVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 155 ~~~~~~~~~-~---~~tv~e~l~~~~~~~~------------~~~~~--~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
.+++.+|.. . .+++.+++.+...... ..+.. ...++.+.+|||||||||+| .+|++|
T Consensus 388 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 467 (556)
T PRK11819 388 KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVL 467 (556)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 133333332 1 1578888765422110 01111 12367899999999999988 899999
Q ss_pred eEec-----------chHHHHHhccCCeEEEEcChHHHHH
Q 023106 212 FLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
|||| .+++.|.++...+|++|||++++..
T Consensus 468 lLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~ 507 (556)
T PRK11819 468 LLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDR 507 (556)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 9999 4556666654446799999998876
No 292
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.2e-25 Score=194.63 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=114.5
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC-----H-
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD-----P- 147 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~-----~- 147 (287)
+++|+++||+..|+++. +|+|+|++|++||..+|+||||||||||+++++|.+. |++| +.+.|+. .
T Consensus 29 ~~li~l~~v~v~r~gk~----iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~---pssg~~~~~G~~~G~~~~~ 101 (257)
T COG1119 29 EPLIELKNVSVRRNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDVTLLGRRFGKGETI 101 (257)
T ss_pred cceEEecceEEEECCEe----eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC---CCCCceeeeeeeccCCcch
Confidence 45799999999999988 9999999999999999999999999999999999999 9888 7777753 2
Q ss_pred HHHhhhCCCCCCC--Chh-HHHHHHHHHhcCCceeec----cCC----------------ccCCCCCCCceeccccceEE
Q 023106 148 KEAHARRGAPWTF--NPL-LLLNCLKNLRNQGSVYAP----SFD----------------HGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 148 ~~~~~~~~~~~~~--~~~-~~~tv~e~l~~~~~~~~~----~~~----------------~~~~~~~~~~LSgGekqRv~ 204 (287)
.+.+.+.|+.... +.. .-.++.+-+..+..-... .++ ....+++...||-||||||.
T Consensus 102 ~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvL 181 (257)
T COG1119 102 FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVL 181 (257)
T ss_pred HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHH
Confidence 3333444422110 000 013344444332211111 111 12457899999999999998
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccCC-----eEEEEcChHHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFDE-----KWFIEVDLDTAMQ 240 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~~-----~i~vtHd~~~~~~ 240 (287)
| .+|.+||||| .+++.+.++... .+||||..+++..
T Consensus 182 iaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~ 238 (257)
T COG1119 182 IARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPP 238 (257)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhccc
Confidence 8 8999999999 344555555443 5899999999876
No 293
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.2e-25 Score=218.68 Aligned_cols=172 Identities=16% Similarity=0.171 Sum_probs=125.1
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----H
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~ 150 (287)
++++++|++.. . +++|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|+++.. .
T Consensus 256 ~~l~~~~~~~~----~----~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 256 VRLRLDGLKGP----G----LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSPRD 324 (501)
T ss_pred cEEEEeccccC----C----cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCHHH
Confidence 36899999832 2 8999999999999999999999999999999999999 9999 8898875421 1
Q ss_pred hhhCCCCCCCChhH------HHHHHHHHhcCCcee--------e------------ccCCc--cCCCCCCCceeccccce
Q 023106 151 HARRGAPWTFNPLL------LLNCLKNLRNQGSVY--------A------------PSFDH--GVGDPVEDDILVGLQHK 202 (287)
Q Consensus 151 ~~~~~~~~~~~~~~------~~tv~e~l~~~~~~~--------~------------~~~~~--~~~~~~~~~LSgGekqR 202 (287)
..+.++++.+|... .+++.+|+.++.... . ..+.. ...++.+.+||||||||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 404 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQK 404 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHH
Confidence 22344555555431 267888876532100 0 01111 23467899999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|.| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|.+++..
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 988 8999999999 44555555443 25799999999986 443 6777777776654
Q ss_pred HH
Q 023106 257 KW 258 (287)
Q Consensus 257 ~~ 258 (287)
..
T Consensus 485 ~~ 486 (501)
T PRK11288 485 ER 486 (501)
T ss_pred HH
Confidence 33
No 294
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.91 E-value=2.3e-25 Score=219.05 Aligned_cols=151 Identities=18% Similarity=0.176 Sum_probs=114.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
.++|+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.+++ ++
T Consensus 320 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~~-~~------ 385 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKL----LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKIGE-TV------ 385 (552)
T ss_pred CeEEEEeeEEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEECC-ce------
Confidence 35899999999998765 9999999999999999999999999999999999999 9999 76643 32
Q ss_pred CCCCCCCChh----HHHHHHHHHhcCCceee------------ccCCc--cCCCCCCCceeccccceEEE-----ecCCE
Q 023106 154 RGAPWTFNPL----LLLNCLKNLRNQGSVYA------------PSFDH--GVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 154 ~~~~~~~~~~----~~~tv~e~l~~~~~~~~------------~~~~~--~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
.+++.+|.. ..+++.+++.++..... ..+.. ...++.+.+|||||||||+| .+|++
T Consensus 386 -~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~l 464 (552)
T TIGR03719 386 -KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNV 464 (552)
T ss_pred -EEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 123333321 12578888776432110 01111 12367889999999999988 89999
Q ss_pred EeEec-----------chHHHHHhccCCeEEEEcChHHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
||||| .+++.|.++...+|++|||++++..
T Consensus 465 llLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~ 505 (552)
T TIGR03719 465 LLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDR 505 (552)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence 99999 4566666654446799999999876
No 295
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.91 E-value=9.6e-26 Score=200.52 Aligned_cols=166 Identities=19% Similarity=0.256 Sum_probs=117.3
Q ss_pred EecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---HhhhC
Q 023106 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHARR 154 (287)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~~ 154 (287)
+++||++. . +|+++||+|.+|+++||+|+||||||||+++|+|+++ + +| +.++|.++.. .....
T Consensus 2 ~~~~l~~~----~----~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~-~G~i~~~g~~i~~~~~~~~~~ 69 (248)
T PRK03695 2 QLNDVAVS----T----RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---G-SGSIQFAGQPLEAWSAAELAR 69 (248)
T ss_pred cccccchh----c----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---C-CeEEEECCEecCcCCHHHHhh
Confidence 57888875 2 7899999999999999999999999999999999875 5 78 8899976421 11122
Q ss_pred CCCCCCChh---HHHHHHHHHhcCCceeecc-------------CC-ccCCCCCCCceeccccceEEE-----e------
Q 023106 155 GAPWTFNPL---LLLNCLKNLRNQGSVYAPS-------------FD-HGVGDPVEDDILVGLQHKVVI-----V------ 206 (287)
Q Consensus 155 ~~~~~~~~~---~~~tv~e~l~~~~~~~~~~-------------~~-~~~~~~~~~~LSgGekqRv~I-----~------ 206 (287)
.+.+.+|.. ...++.+|+.+........ +. ....++.+..|||||+||+.| .
T Consensus 70 ~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~ 149 (248)
T PRK03695 70 HRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDIN 149 (248)
T ss_pred heEEecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccC
Confidence 234444432 1268888887653211100 00 012357889999999999988 4
Q ss_pred -cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 207 -DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 -~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+|+++|||| .+.+.|.++.+ .+|++|||++++.. +++ |++++.|+.+++.
T Consensus 150 p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 150 PAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred CCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 669999999 44555555432 24699999998866 443 7777788877663
No 296
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.91 E-value=8e-26 Score=217.04 Aligned_cols=171 Identities=16% Similarity=0.173 Sum_probs=121.5
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
++++++||++.|++.. ...+|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.+.. ...
T Consensus 20 ~mL~lknL~~~~~~~~-~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~~---i~~ 92 (549)
T PRK13545 20 PFDKLKDLFFRSKDGE-YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAAL---IAI 92 (549)
T ss_pred ceeEEEEEEEecCCCc-cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEeee---EEe
Confidence 3689999999887632 1238999999999999999999999999999999999999 9999 888886421 000
Q ss_pred CCCCCCChhHHHHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEe
Q 023106 155 GAPWTFNPLLLLNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLD 214 (287)
Q Consensus 155 ~~~~~~~~~~~~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllD 214 (287)
.. .+ ...+++.+|+.+....... .+. ....++.+..|||||+||++| .+|++||||
T Consensus 93 ~~--~l--~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLD 168 (549)
T PRK13545 93 SS--GL--NGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVID 168 (549)
T ss_pred cc--cc--CCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 00 01 1114666776542211000 000 112357889999999999988 899999999
Q ss_pred c-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 215 G-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 215 E-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
| .+++.|.++.+ .+|++|||++++.. +++ |+++..|+++++..
T Consensus 169 EPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 169 EALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9 34555555432 24699999998876 443 77778888877654
No 297
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.91 E-value=1.1e-25 Score=219.11 Aligned_cols=168 Identities=14% Similarity=0.173 Sum_probs=124.1
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----H
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~ 150 (287)
++|+++|+++ . +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| |.++|.++.. .
T Consensus 256 ~~l~~~~l~~-----~----~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 256 VRLKVDNLSG-----P----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSPQD 323 (501)
T ss_pred cEEEEeCccc-----C----CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHHH
Confidence 4799999984 2 7999999999999999999999999999999999999 9999 8899865421 1
Q ss_pred hhhCCCCCCCChh------HHHHHHHHHhcCCc--ee-----e-------------ccCCc--cCCCCCCCceeccccce
Q 023106 151 HARRGAPWTFNPL------LLLNCLKNLRNQGS--VY-----A-------------PSFDH--GVGDPVEDDILVGLQHK 202 (287)
Q Consensus 151 ~~~~~~~~~~~~~------~~~tv~e~l~~~~~--~~-----~-------------~~~~~--~~~~~~~~~LSgGekqR 202 (287)
..+.++++.+|.. ..+++.+|+.+... .. . ..+.- ...++.+.+||||||||
T Consensus 324 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqr 403 (501)
T PRK10762 324 GLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQK 403 (501)
T ss_pred HHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHH
Confidence 2234566666653 12678888865311 00 0 00111 23467899999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
|.| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |+++..|++.++
T Consensus 404 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 988 8999999999 45566666543 24799999999876 443 677777776665
No 298
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.91 E-value=1.9e-25 Score=194.65 Aligned_cols=155 Identities=12% Similarity=0.147 Sum_probs=109.5
Q ss_pred EecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-------
Q 023106 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA------- 150 (287)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~------- 150 (287)
.+.|+.+.|++.. .+++++||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++...
T Consensus 2 ~~~~~~~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~ 75 (218)
T cd03290 2 QVTNGYFSWGSGL---ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRS 75 (218)
T ss_pred eeeeeEEecCCCC---cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCcccccccccccch
Confidence 4678899997432 28999999999999999999999999999999999999 9999 88998765321
Q ss_pred hhhCCCCCCCChhHH--HHHHHHHhcCCceeecc-------C--C----------ccCCCCCCCceeccccceEEE----
Q 023106 151 HARRGAPWTFNPLLL--LNCLKNLRNQGSVYAPS-------F--D----------HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~~-------~--~----------~~~~~~~~~~LSgGekqRv~I---- 205 (287)
..+.++.+.+|...+ .++.+|+.+........ . . ....+..+..|||||+|||.|
T Consensus 76 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral 155 (218)
T cd03290 76 RNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARAL 155 (218)
T ss_pred hhcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHH
Confidence 122334455554322 57888887643211000 0 0 001235688999999999988
Q ss_pred -ecCCEEeEec-----------chHH--HHHhccC---CeEEEEcChHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWK--DVSSMFD---EKWFIEVDLDTAM 239 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~--~l~~~~~---~~i~vtHd~~~~~ 239 (287)
.+|+++|||| .+++ .+..+.+ ..|++||+++.+.
T Consensus 156 ~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~ 206 (218)
T cd03290 156 YQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP 206 (218)
T ss_pred hhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh
Confidence 8999999999 2333 2222222 2479999998864
No 299
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.91 E-value=2.3e-25 Score=220.52 Aligned_cols=175 Identities=21% Similarity=0.248 Sum_probs=129.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||++.|++.. .+|+|+||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 334 ~i~~~~v~~~y~~~~---~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 407 (585)
T TIGR01192 334 AVEFRHITFEFANSS---QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTRESL 407 (585)
T ss_pred eEEEEEEEEECCCCC---ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCHHHH
Confidence 599999999997522 28999999999999999999999999999999999999 9999 89999875431 12
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCcee-ec----------------cCCcc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY-AP----------------SFDHG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~-~~----------------~~~~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+.+|...+ .|+.+|+.++..-. .. ....+ ........||||||||++|
T Consensus 408 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall 487 (585)
T TIGR01192 408 RKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAIL 487 (585)
T ss_pred HhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 2334455554332 68889998763210 00 00000 1123567799999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+.+.|.++... +|+|||+.+.+.. +++ |++++.|+.+++..
T Consensus 488 ~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 488 KNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHH
Confidence 8999999999 445555555332 5799999998865 544 78888898887754
No 300
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.4e-25 Score=208.38 Aligned_cols=176 Identities=15% Similarity=0.155 Sum_probs=134.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhh---
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHA--- 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~--- 152 (287)
.++++||+++|++.. .++|+|+||++.+||.+||+|++|||||||+++|+|.+. |++| +.++|.++.....
T Consensus 336 ~l~~~~vsF~y~~~~--~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~---~~~G~i~~~g~~~~~l~~~~~ 410 (573)
T COG4987 336 ALELRNVSFTYPGQQ--TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD---PQQGSITLNGVEIASLDEQAL 410 (573)
T ss_pred eeeeccceeecCCCc--cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC---CCCCeeeECCcChhhCChhhH
Confidence 699999999998753 349999999999999999999999999999999999999 9999 9999987644321
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-------------ccC--Cc-----cCCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-------------PSF--DH-----GVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-------------~~~--~~-----~~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+....|...+ -|+.+|+.....-.. ..+ +. ...+.-...|||||+||++|
T Consensus 411 ~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL 490 (573)
T COG4987 411 RETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALL 490 (573)
T ss_pred HHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHH
Confidence 2223334443332 688888887533100 000 00 01123456799999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
++.+++|||| +++..+.+...+ .+||||++..+.. |++ |+++++|+..++..
T Consensus 491 ~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 491 HDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred cCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 8999999999 566677666653 5799999999988 766 99999999999865
No 301
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.2e-25 Score=224.19 Aligned_cols=172 Identities=16% Similarity=0.163 Sum_probs=111.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH----HH-H
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP----KE-A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~----~~-~ 150 (287)
||+++||+++|+++. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++| |.++|... .. .
T Consensus 1 ~i~i~nls~~~g~~~----~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~~~~~i~~~~q~~ 73 (638)
T PRK10636 1 MIVFSSLQIRRGVRV----LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFPGNWQLAWVNQET 73 (638)
T ss_pred CEEEEEEEEEeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCCCEEEEEecCC
Confidence 489999999998876 9999999999999999999999999999999999999 9999 77777421 00 0
Q ss_pred h--hhCCCCCCCChhHH---HHHH----H------HH-------h-cCCc---------eeeccCCccCCCCCCCceecc
Q 023106 151 H--ARRGAPWTFNPLLL---LNCL----K------NL-------R-NQGS---------VYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 151 ~--~~~~~~~~~~~~~~---~tv~----e------~l-------~-~~~~---------~~~~~~~~~~~~~~~~~LSgG 198 (287)
. ....+.++++.... ++.. + .+ . .... +....+.....++.+.+||||
T Consensus 74 ~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgG 153 (638)
T PRK10636 74 PALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGG 153 (638)
T ss_pred CCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHH
Confidence 0 00001111111000 0100 0 00 0 0000 000111112346788999999
Q ss_pred ccceEEE-----ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHH---HHH----HHHh-cCCCcHH
Q 023106 199 LQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPD 254 (287)
Q Consensus 199 ekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~---rvi----gr~i-~~G~~~~ 254 (287)
|||||+| .+|++||||| .+.+.|.++-..+|+||||++++.. +++ |+++ ..|+...
T Consensus 154 erqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 154 WRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHH
Confidence 9999988 8999999999 3344444443345799999999876 433 5554 2565444
Q ss_pred H
Q 023106 255 V 255 (287)
Q Consensus 255 ~ 255 (287)
.
T Consensus 234 ~ 234 (638)
T PRK10636 234 F 234 (638)
T ss_pred H
Confidence 3
No 302
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.90 E-value=4.4e-25 Score=217.70 Aligned_cols=175 Identities=20% Similarity=0.236 Sum_probs=131.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
-|+++||+++|++.. ..+|+|+||++++|++++|+|+||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 330 ~i~~~~v~f~y~~~~--~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 330 DVEFRNVTFRYPGRD--RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred eEEEEEEEEEcCCCC--CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCHHHH
Confidence 499999999996521 138999999999999999999999999999999999999 9999 99999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCc--eeec----------------cCCccCC---CCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGS--VYAP----------------SFDHGVG---DPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~--~~~~----------------~~~~~~~---~~~~~~LSgGekqRv~I---- 205 (287)
+..+.+.+|++.+ .|+.+|+.++.. .... ....+.. ......||||||||++|
T Consensus 405 ~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARal 484 (571)
T TIGR02203 405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARAL 484 (571)
T ss_pred HhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 3446666666554 688999987632 1100 0111111 12245699999999998
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
.+|++++||| .+.+.|.++.+. .|+|||+...... +++ |++++.|+.+++.
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 8999999999 456666666433 5799999988766 554 7878888888874
No 303
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.90 E-value=3.7e-25 Score=220.81 Aligned_cols=173 Identities=16% Similarity=0.140 Sum_probs=114.7
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH-HH---
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP-KE--- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~-~~--- 149 (287)
|.||+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| |.++|... ..
T Consensus 1 m~~l~i~~ls~~~~~~~----il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~~~~~~~~l~q 73 (635)
T PRK11147 1 MSLISIHGAWLSFSDAP----LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYEQDLIVARLQQ 73 (635)
T ss_pred CcEEEEeeEEEEeCCce----eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeCCCCEEEEecc
Confidence 45899999999998765 9999999999999999999999999999999999999 9999 77776321 00
Q ss_pred HhhhCCCCCCCChh--------HHHHHH-------------HHHhcCC------------cee------eccCCccCCCC
Q 023106 150 AHARRGAPWTFNPL--------LLLNCL-------------KNLRNQG------------SVY------APSFDHGVGDP 190 (287)
Q Consensus 150 ~~~~~~~~~~~~~~--------~~~tv~-------------e~l~~~~------------~~~------~~~~~~~~~~~ 190 (287)
..........++.. ...+.+ +++.... ... ...+.. ..++
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl-~~~~ 152 (635)
T PRK11147 74 DPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL-DPDA 152 (635)
T ss_pred CCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC-CCCC
Confidence 00000011111110 000111 1111000 000 000111 1367
Q ss_pred CCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHH---HHH----HHHh
Q 023106 191 VEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI 247 (287)
Q Consensus 191 ~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~---rvi----gr~i 247 (287)
.+.+|||||||||+| .+|++||||| .+.+.|.++...+|+||||++++.. +++ |+++
T Consensus 153 ~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 153 ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 899999999999988 8999999999 3445555554445799999999876 444 6665
Q ss_pred c-CCCcHHH
Q 023106 248 S-TGKPPDV 255 (287)
Q Consensus 248 ~-~G~~~~~ 255 (287)
. .|+..+.
T Consensus 233 ~~~g~~~~~ 241 (635)
T PRK11147 233 SYPGNYDQY 241 (635)
T ss_pred EecCCHHHH
Confidence 3 5766553
No 304
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.90 E-value=3.9e-25 Score=218.33 Aligned_cols=177 Identities=22% Similarity=0.302 Sum_probs=131.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ...+|+|+||++++|++++|+|+||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 337 ~i~~~~v~f~y~~~~-~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~~~~~~ 412 (576)
T TIGR02204 337 EIEFEQVNFAYPARP-DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQLDPAEL 412 (576)
T ss_pred eEEEEEEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHHH
Confidence 599999999996421 1238999999999999999999999999999999999999 9999 89999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCcee-----------------eccCCccCC---CCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY-----------------APSFDHGVG---DPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~-----------------~~~~~~~~~---~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+.+|++.+ .|+.+|+.++..-. ...+..+.. ......||||||||++|
T Consensus 413 ~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~ 492 (576)
T TIGR02204 413 RARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL 492 (576)
T ss_pred HHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 3346666666544 68899998753210 001111111 12356799999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+.+.+.++.+ ..|+|||+.+.... |++ |++++.|+.+++..
T Consensus 493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 493 KDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred hCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 8999999999 45555666543 35799999988866 554 78888898877643
No 305
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=1.1e-25 Score=191.07 Aligned_cols=169 Identities=16% Similarity=0.181 Sum_probs=121.2
Q ss_pred EEEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHh---
Q 023106 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAH--- 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~--- 151 (287)
|+++.|+.+.|.. ......+|+++|++|.+|+++-|+|.||||||||++.|+|.+. |++| |.++|.++....
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~~~ 77 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSVAK 77 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCHHH
Confidence 3667777777643 2234559999999999999999999999999999999999999 9999 999999874321
Q ss_pred hhCCCCCCCChhHH-----HHHHHHHhcCCcee-eccCCc-------------------c---CCCCCCCceeccccceE
Q 023106 152 ARRGAPWTFNPLLL-----LNCLKNLRNQGSVY-APSFDH-------------------G---VGDPVEDDILVGLQHKV 203 (287)
Q Consensus 152 ~~~~~~~~~~~~~~-----~tv~e~l~~~~~~~-~~~~~~-------------------~---~~~~~~~~LSgGekqRv 203 (287)
+..-+.-+||++.. +|+.||+.+..... ...+.. + ..+..++-|||||||-+
T Consensus 78 RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQal 157 (263)
T COG1101 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQAL 157 (263)
T ss_pred HhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHH
Confidence 11124556776543 89999998743321 001110 0 12456788999999998
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhcc---C-CeEEEEcChHHHHH---HHH----HHHhc
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMF---D-EKWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~---~-~~i~vtHd~~~~~~---rvi----gr~i~ 248 (287)
.+ ..|++|+||| .+++.-.+.. + ..+||||+|+.+.. |.+ |+++.
T Consensus 158 sL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 158 SLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred HHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 87 8999999999 1222222222 2 35799999999998 666 77764
No 306
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.90 E-value=4.1e-25 Score=222.70 Aligned_cols=176 Identities=18% Similarity=0.231 Sum_probs=132.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ..+|+|+||++++|+.++|+|+||||||||+++|+|++. |++| |.++|.++... ..
T Consensus 455 ~i~~~~vsf~y~~~~--~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 455 AITFENIRFRYAPDS--PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred eEEEEEEEEEcCCCC--ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCHHHH
Confidence 599999999996421 128999999999999999999999999999999999999 9999 99999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCcee-e----------------ccCCccC---CCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY-A----------------PSFDHGV---GDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~-~----------------~~~~~~~---~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|+..+ .|+.||+.++..-. . .....+. .......||||||||++|
T Consensus 530 r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall 609 (694)
T TIGR01846 530 RRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALV 609 (694)
T ss_pred HHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHH
Confidence 3345566665443 68999998753210 0 0000011 123456799999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+.+.+.++.. ..|++||+++.+.. +++ |++++.|+.+++..
T Consensus 610 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 610 GNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 8999999999 45566666543 25799999998876 554 88889999888754
No 307
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=6.6e-25 Score=192.12 Aligned_cols=181 Identities=18% Similarity=0.215 Sum_probs=122.6
Q ss_pred EEEecCchhhhhh-----------------hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 77 VVEARCMDEVYDA-----------------LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 77 ~i~~~~l~~~y~~-----------------~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
+|.++||+|.|.- +..-..+++|+||+|++|+++|++|+|||||||++|+|+|++. |++|
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---p~~G 79 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---PTSG 79 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---cCCC
Confidence 5777788777731 1112448999999999999999999999999999999999999 9999
Q ss_pred -eeeCCCCHHHH---h-hhC--------CCCCCCChhHHHHHHHHHhcCCce-eec-------cCC-ccCCCCCCCceec
Q 023106 140 -SSFDSQDPKEA---H-ARR--------GAPWTFNPLLLLNCLKNLRNQGSV-YAP-------SFD-HGVGDPVEDDILV 197 (287)
Q Consensus 140 -i~~~g~~~~~~---~-~~~--------~~~~~~~~~~~~tv~e~l~~~~~~-~~~-------~~~-~~~~~~~~~~LSg 197 (287)
+.++|..+... + +.. +..+......-+.+.+.|.....- +.. ..+ ......++..||.
T Consensus 80 ~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSl 159 (325)
T COG4586 80 KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSL 159 (325)
T ss_pred eEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccc
Confidence 89999875321 1 111 111111111113444433321110 000 000 1123567899999
Q ss_pred cccceEEE-----ecCCEEeEec-----------chHHHHHhccC---C-eEEEEcChHHHHH---HHH----HHHhcCC
Q 023106 198 GLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---E-KWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 198 GekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~-~i~vtHd~~~~~~---rvi----gr~i~~G 250 (287)
|||.|+.| ++|.+|+||| .+.+.+++... . +++.||+++.+.. |++ |+++.+|
T Consensus 160 GqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg 239 (325)
T COG4586 160 GQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDG 239 (325)
T ss_pred hHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecc
Confidence 99999866 9999999999 34444444433 2 4699999999988 555 9999999
Q ss_pred CcHHHHHHHH
Q 023106 251 KPPDVAKWRI 260 (287)
Q Consensus 251 ~~~~~~~~~~ 260 (287)
+..++...+.
T Consensus 240 ~l~~l~~~f~ 249 (325)
T COG4586 240 TLAQLQEQFG 249 (325)
T ss_pred cHHHHHHHhC
Confidence 9988876643
No 308
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.90 E-value=5.5e-25 Score=213.53 Aligned_cols=159 Identities=18% Similarity=0.136 Sum_probs=113.0
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-Ccc-eeeCCCCHHH---
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKA-SSFDSQDPKE--- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-~~G-i~~~g~~~~~--- 149 (287)
.++|+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ + ++| +.++|.++..
T Consensus 258 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRP----ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred CceEEEeceEEEECCee----EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEEecccCCCCCC
Confidence 45899999999998755 8999999999999999999999999999999999876 5 588 8898865311
Q ss_pred -HhhhCCCCCCCChhHH-----HHHHHHHhcCCc----eee--------------ccCCc-c-CCCCCCCceeccccceE
Q 023106 150 -AHARRGAPWTFNPLLL-----LNCLKNLRNQGS----VYA--------------PSFDH-G-VGDPVEDDILVGLQHKV 203 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~~-----~tv~e~l~~~~~----~~~--------------~~~~~-~-~~~~~~~~LSgGekqRv 203 (287)
...+..+++.+|...+ .++.+++..... ... ..+.- . ..++.+.+|||||||||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 410 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLA 410 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHH
Confidence 1122345566654322 233444332100 000 00111 1 34678899999999999
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccC---C-eEEEEcChHHHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFD---E-KWFIEVDLDTAMQ 240 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~---~-~i~vtHd~~~~~~ 240 (287)
+| .+|++||||| .+++.|.++.+ . +|++|||++++..
T Consensus 411 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~ 467 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPA 467 (490)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhh
Confidence 88 8999999999 45555555532 2 4799999998864
No 309
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.3e-25 Score=210.22 Aligned_cols=176 Identities=17% Similarity=0.219 Sum_probs=133.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.++++|+++.|++.+ +++.|+||++++|+.++|+|+||||||||+++|+|+++ |++| +.++|.+..+. ..
T Consensus 320 ei~~~~l~~~y~~g~---~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~ 393 (559)
T COG4988 320 EISLENLSFRYPDGK---PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAW 393 (559)
T ss_pred eeeecceEEecCCCC---cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHH
Confidence 366679999998752 28999999999999999999999999999999999999 9999 99999876442 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCcee-------------eccCCc--cCCCC----CCCceeccccceEEE-----e
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY-------------APSFDH--GVGDP----VEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~-------------~~~~~~--~~~~~----~~~~LSgGekqRv~I-----~ 206 (287)
++.+.++.|.+.+ -|+.||+.++..-. ...+-. +-.+. ....|||||+|||++ .
T Consensus 394 ~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~ 473 (559)
T COG4988 394 RKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS 473 (559)
T ss_pred HhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC
Confidence 3445555555443 58889998764311 000000 11122 334599999999988 7
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
+++++|+|| .+.+.|.++.+. ++++||++..+.. +++ ||+++.|+.+++...
T Consensus 474 ~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 474 PASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred CCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc
Confidence 899999999 456666666654 5799999999988 555 899999999998543
No 310
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.90 E-value=3.9e-25 Score=218.24 Aligned_cols=176 Identities=14% Similarity=0.182 Sum_probs=129.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++|++++|++.. ..+|+++||++++|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 313 ~I~~~~v~~~y~~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~~~~ 387 (569)
T PRK10789 313 ELDVNIRQFTYPQTD--HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQLDSW 387 (569)
T ss_pred cEEEEEEEEECCCCC--CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCHHHH
Confidence 489999999996421 238999999999999999999999999999999999999 9999 89999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-c----------------cCCcc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-P----------------SFDHG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~----------------~~~~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+.+|.+.+ .|+.+|+.++..-.. . .+..+ ........||||||||++|
T Consensus 388 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall 467 (569)
T PRK10789 388 RSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALL 467 (569)
T ss_pred HhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 2334555555433 588999987632100 0 00000 1123456799999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+++.|.++.. ..|++||+++.+.. +++ |++++.|+.+++..
T Consensus 468 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 468 LNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 8999999999 45556665543 24799999988766 544 78888998887753
No 311
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.90 E-value=1.3e-25 Score=197.31 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=111.6
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC----Ccc-eeeCCCCHHHHhh-hCCCCCCCChhH-----
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKA-SSFDSQDPKEAHA-RRGAPWTFNPLL----- 164 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p----~~G-i~~~g~~~~~~~~-~~~~~~~~~~~~----- 164 (287)
+|+|+||+|++|++++|+||||||||||+++|+|+++ | ++| +.++|.++..... ...+.+.+|...
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 4789999999999999999999999999999999998 8 899 8899987643211 223445554431
Q ss_pred HHHHHHHHhcCCcee-e-------------cc--CCc--cCCCCCCCceeccccceEEE-----ecCCEEeEec------
Q 023106 165 LLNCLKNLRNQGSVY-A-------------PS--FDH--GVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG------ 215 (287)
Q Consensus 165 ~~tv~e~l~~~~~~~-~-------------~~--~~~--~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE------ 215 (287)
.+++.+++.+..... . .. ... ...++.+..|||||+|||+| .+|+++||||
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 145555553321100 0 00 110 12356788999999999998 8999999999
Q ss_pred -----chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 216 -----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 216 -----~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+++.|.++.+ .+|++||+++++.. |++ |++++.|+++++.
T Consensus 158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 158 VVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 34555655542 24699999998865 444 7777788877764
No 312
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.90 E-value=4.4e-25 Score=202.05 Aligned_cols=183 Identities=19% Similarity=0.256 Sum_probs=132.8
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~-- 149 (287)
+++|+++||+..|........++++|||+|.+||.+||+|.+|||||-..+.|+++++.. ..-+| +.++|.++-.
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 568999999999974444456999999999999999999999999999999999999842 11256 8999987522
Q ss_pred ---HhhhCC--CCCCCChhH-----HHHHHHHH----hcCCceeec---------------cCCccCCCCCCCceecccc
Q 023106 150 ---AHARRG--APWTFNPLL-----LLNCLKNL----RNQGSVYAP---------------SFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 150 ---~~~~~~--~~~~~~~~~-----~~tv~e~l----~~~~~~~~~---------------~~~~~~~~~~~~~LSgGek 200 (287)
.+.-+| +.+.||.+. +.++-..+ .....+... .-.....+.+|++|||||+
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 222333 666777542 23333333 332221100 0011234679999999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~ 253 (287)
|||.| .+|++||.|| ++++.|+++... .+|||||+..+.+ |++ |++++.|..+
T Consensus 164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~ 243 (534)
T COG4172 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTE 243 (534)
T ss_pred hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHH
Confidence 99988 8999999999 456666655443 4699999999987 655 8999999988
Q ss_pred HHHH
Q 023106 254 DVAK 257 (287)
Q Consensus 254 ~~~~ 257 (287)
++..
T Consensus 244 ~lF~ 247 (534)
T COG4172 244 TLFA 247 (534)
T ss_pred HHhh
Confidence 7743
No 313
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.90 E-value=1.7e-25 Score=218.14 Aligned_cols=170 Identities=19% Similarity=0.247 Sum_probs=121.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
.++|+++|+++ . +|+++||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 266 ~~~l~~~~l~~-----~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~ 333 (510)
T PRK15439 266 APVLTVEDLTG-----E----GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALSTA 333 (510)
T ss_pred CceEEEeCCCC-----C----CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCCHH
Confidence 34799999983 2 6899999999999999999999999999999999999 9999 8888875421
Q ss_pred HhhhCCCCCCCChh------HHHHHHHHHhcCC----cee-------------eccCCc--cCCCCCCCceeccccceEE
Q 023106 150 AHARRGAPWTFNPL------LLLNCLKNLRNQG----SVY-------------APSFDH--GVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ~~~~~~~~~~~~~~------~~~tv~e~l~~~~----~~~-------------~~~~~~--~~~~~~~~~LSgGekqRv~ 204 (287)
...+.++.+.+|.. ..+++.+|+.... ... ...+.- ...++.+.+|||||||||+
T Consensus 334 ~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 334 QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred HHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHH
Confidence 11233455555532 1146677764210 000 001111 2346788999999999998
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |+++..|+++++.
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 8 8999999999 45555555433 24799999999986 443 7777777766543
No 314
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.90 E-value=1.9e-25 Score=200.44 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=106.5
Q ss_pred cccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHH
Q 023106 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNL 172 (287)
Q Consensus 94 ~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l 172 (287)
..+|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|... ...+.. ... ..+++.+|+
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~~---~~~~~~-~~~---~~~tv~enl 106 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGKVDRNGEVS---VIAISA-GLS---GQLTGIENI 106 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEe---EEeccc-CCC---CCCcHHHHH
Confidence 448999999999999999999999999999999999999 9999 88888521 000010 011 113455555
Q ss_pred hcCCceee---c-----------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHH
Q 023106 173 RNQGSVYA---P-----------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDV 221 (287)
Q Consensus 173 ~~~~~~~~---~-----------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l 221 (287)
.+...... . .+. ....++.+.+||+||+|||+| .+|++||||| .+++.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L 186 (264)
T PRK13546 107 EFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKI 186 (264)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 43210000 0 000 122356788999999999988 8999999999 344455
Q ss_pred HhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 222 SSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 222 ~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
.++.. ..|++|||++++.. +++ |+++..|+.+++...
T Consensus 187 ~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 187 YEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK 233 (264)
T ss_pred HHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHH
Confidence 44432 24699999998875 443 777778887776543
No 315
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.90 E-value=4.9e-25 Score=216.45 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=127.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++|++++|++.. ..+|+|+||++++|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 316 ~i~~~~v~~~y~~~~--~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 316 HLSVENVTIVPPGGK--KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred eEEEEEEEEEcCCCC--ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCCHHHH
Confidence 599999999996421 128999999999999999999999999999999999999 9999 89999876431 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCc-eeec----------------cCCcc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGS-VYAP----------------SFDHG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~-~~~~----------------~~~~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+.+|.+.+ .|+.+|+.++.. .... .+..+ ........||||||||++|
T Consensus 391 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 391 GKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred hhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 3345555555433 588899875432 1000 01001 1123467899999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhcc-C--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMF-D--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~-~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+.+.+.++. . ..+++||+++.... +++ |++++.|+.+++.
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 8999999999 4556666653 2 35799999987654 444 7888888877663
No 316
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7.2e-25 Score=212.77 Aligned_cols=168 Identities=14% Similarity=0.200 Sum_probs=116.2
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----H
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~ 150 (287)
++|+++||++.| .. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 249 ~~i~~~~l~~~~--~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 249 VILEVRNLTSLR--QP----SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKKINNHNANE 319 (491)
T ss_pred cEEEEeCccccc--Cc----ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEECCEECCCCCHHH
Confidence 479999999974 23 8999999999999999999999999999999999999 9999 8899865421 1
Q ss_pred hhhCCCCCCCChhH------HHH-----HHHHHhcCCce----ee-----------c--cCCccCCCCCCCceeccccce
Q 023106 151 HARRGAPWTFNPLL------LLN-----CLKNLRNQGSV----YA-----------P--SFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 151 ~~~~~~~~~~~~~~------~~t-----v~e~l~~~~~~----~~-----------~--~~~~~~~~~~~~~LSgGekqR 202 (287)
..+.++++.+|... .++ +++++...... .. . .+.....++.+.+||||||||
T Consensus 320 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 399 (491)
T PRK10982 320 AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQK 399 (491)
T ss_pred HHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHH
Confidence 22334444444321 022 23333321110 00 0 111123477899999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCc
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~ 252 (287)
|+| .+|++||||| .+++.+.++.+ .+|++|||++++.. |++ |+++..+++
T Consensus 400 v~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 400 VIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence 988 8999999999 45555555433 24699999999976 333 555544433
No 317
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=1.5e-24 Score=221.39 Aligned_cols=175 Identities=19% Similarity=0.252 Sum_probs=135.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
-|+++||++.|+.++ .+.+|+|+||+|++|+-+|||||+||||||.+.+|...+. |++| +.+||.+++.. ..
T Consensus 987 ~I~~~~V~F~YPsRP-~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRP-DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EEEEeeeEeeCCCCC-CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCcccccCCHHHH
Confidence 399999999998775 5669999999999999999999999999999999999999 9999 99999986542 33
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec----------------------cCCccCCCCCCCceeccccceEEE---
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP----------------------SFDHGVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~----------------------~~~~~~~~~~~~~LSgGekqRv~I--- 205 (287)
+..++.+-|.+.+ .|+.|||.++..- .+ .|+... -....+||||||||++|
T Consensus 1063 R~~i~lVsQEP~LF~~TIrENI~YG~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~v-GerG~QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFNGTIRENIAYGSEE-VSEEEIIEAAKLANAHNFISSLPQGYDTRV-GERGVQLSGGQKQRIAIARA 1140 (1228)
T ss_pred HHhcceeccCchhhcccHHHHHhccCCC-CCHHHHHHHHHHhhhHHHHhcCcCcccCcc-CcccCcCCchHHHHHHHHHH
Confidence 4445556665554 6999999998221 11 011111 23456899999999999
Q ss_pred --ecCCEEeEec-------chHHHHHhccC----C--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 --VDGNYLFLDG-------GVWKDVSSMFD----E--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 --~~p~lLllDE-------~~~~~l~~~~~----~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| +.-+.+++.+| . +|+|.|-+..+.. .++ |+++++|+-++++.
T Consensus 1141 ilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1141 ILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 9999999999 22233333333 2 6899999999988 333 89999999999875
No 318
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.90 E-value=2.4e-24 Score=210.81 Aligned_cols=158 Identities=19% Similarity=0.227 Sum_probs=117.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. .++|+|+||++++|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 320 ~i~~~~v~f~y~~~~--~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 320 SLEFSGLSVAYPGRR--APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred eEEEEEEEEECCCCC--cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCHHHH
Confidence 599999999997531 138999999999999999999999999999999999999 9999 99999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-c----------------cCCccC---CCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-P----------------SFDHGV---GDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~----------------~~~~~~---~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|...+ .|+.||+.++..... . .+..+. .......||||||||++|
T Consensus 395 r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~ 474 (529)
T TIGR02857 395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFL 474 (529)
T ss_pred HhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHh
Confidence 3345555555443 689999987532100 0 000001 112456799999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAM 239 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~ 239 (287)
.+|+++|||| .+.+.+.++.. .+|+|||+++.+.
T Consensus 475 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 521 (529)
T TIGR02857 475 RDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE 521 (529)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 8999999999 45556666533 2579999998764
No 319
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.1e-24 Score=179.59 Aligned_cols=175 Identities=18% Similarity=0.273 Sum_probs=120.1
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC---CCHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS---QDPK-- 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g---~~~~-- 148 (287)
.|.+++.+++|.|+... -.+||||++.+||++||+|.+|||||||+++|++.+. |+.| +.+.. +...
T Consensus 4 ~PLL~V~~lsk~Yg~~~----gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 4 KPLLSVSGLSKLYGPGK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVTYRMRDGQPRDLY 76 (258)
T ss_pred CcceeehhhhhhhCCCc----CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEEEEcCCCCchhHh
Confidence 35799999999999887 7899999999999999999999999999999999999 9999 65532 2211
Q ss_pred ---HH--h--hhCCCCCCCChhHH-----HHHHHHHh-----cCCcee------------eccCCccCCCCCCCceeccc
Q 023106 149 ---EA--H--ARRGAPWTFNPLLL-----LNCLKNLR-----NQGSVY------------APSFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 149 ---~~--~--~~~~~~~~~~~~~~-----~tv~e~l~-----~~~~~~------------~~~~~~~~~~~~~~~LSgGe 199 (287)
+. + .+...+++.|.+.- .+.-.|+. .+.+-+ .-..+....+..|.++||||
T Consensus 77 ~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGM 156 (258)
T COG4107 77 TMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGM 156 (258)
T ss_pred hhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHH
Confidence 11 1 12224444444321 11111111 011100 01112223456789999999
Q ss_pred cceEEE-----ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCc
Q 023106 200 QHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 200 kqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~ 252 (287)
+||+.| ..|.++++|| .+++.++.+..+ .++||||+..+.. |.+ |++++.|-+
T Consensus 157 qQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLT 236 (258)
T COG4107 157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLT 236 (258)
T ss_pred HHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccc
Confidence 999988 7899999999 455555555432 5799999998865 443 788888877
Q ss_pred HHHH
Q 023106 253 PDVA 256 (287)
Q Consensus 253 ~~~~ 256 (287)
+.+.
T Consensus 237 DrvL 240 (258)
T COG4107 237 DRVL 240 (258)
T ss_pred cccc
Confidence 7664
No 320
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.89 E-value=9.1e-25 Score=190.06 Aligned_cols=151 Identities=11% Similarity=0.056 Sum_probs=105.2
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-ee-eCCCCHHHHhhhCCCCCCCChhHHHHHHHHHh
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SS-FDSQDPKEAHARRGAPWTFNPLLLLNCLKNLR 173 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~-~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~ 173 (287)
+|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +. ++|.... +.........+++.+|+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~~-------~~~~~~l~~~ltv~enl~ 71 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDALP-------LGANSFILPGLTGEENAR 71 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCceec-------cccccccCCcCcHHHHHH
Confidence 7899999999999999999999999999999999999 9999 75 6665331 111111111246667765
Q ss_pred cCCceeecc-----------CC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHhc-
Q 023106 174 NQGSVYAPS-----------FD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSM- 224 (287)
Q Consensus 174 ~~~~~~~~~-----------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~- 224 (287)
+....+... .. ....++.+..||+|||||++| .+|+++|||| .+++.+.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~ 151 (213)
T PRK15177 72 MMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQL 151 (213)
T ss_pred HHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHh
Confidence 532211000 00 012356788999999999988 8999999999 233334322
Q ss_pred cC-CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 225 FD-EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 225 ~~-~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+ ..+++|||++.+.. +++ |++++.|+..+..
T Consensus 152 ~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 152 QQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred hCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 22 35799999999875 444 7777888777663
No 321
>PLN03211 ABC transporter G-25; Provisional
Probab=99.89 E-value=1.4e-24 Score=216.81 Aligned_cols=171 Identities=19% Similarity=0.215 Sum_probs=124.8
Q ss_pred EecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC--cc-eeeCCCCHHHHhhhCC
Q 023106 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~--~G-i~~~g~~~~~~~~~~~ 155 (287)
.++|+++.|+++. +|+|+|+++++|+++||+||||||||||+++|+|.++ |+ +| +.++|+++.... ...
T Consensus 70 ~~~~l~~~~~~~~----iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~-~~~ 141 (659)
T PLN03211 70 KISDETRQIQERT----ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQI-LKR 141 (659)
T ss_pred ccccccccCCCCe----eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhh-ccc
Confidence 3678899998766 9999999999999999999999999999999999988 75 78 999998653322 223
Q ss_pred CCCCCChhHH---HHHHHHHhcCCceeecc-CC------------------c----cCCCCCCCceeccccceEEE----
Q 023106 156 APWTFNPLLL---LNCLKNLRNQGSVYAPS-FD------------------H----GVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 156 ~~~~~~~~~~---~tv~e~l~~~~~~~~~~-~~------------------~----~~~~~~~~~LSgGekqRv~I---- 205 (287)
+.+++|...+ +|+.|++.+......+. .. . ...++.+..|||||||||.|
T Consensus 142 i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL 221 (659)
T PLN03211 142 TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM 221 (659)
T ss_pred eEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHH
Confidence 5555554332 68889887643221110 00 0 01134567899999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHH-HHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDT-AMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~-~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++|+||| .+++.|+++.+ .+|+++|+++. +.+ +++ |+++..|+++++..
T Consensus 222 ~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 222 LINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 8999999999 45566665543 24699999873 443 444 78888998887754
No 322
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=1.5e-24 Score=180.05 Aligned_cols=180 Identities=13% Similarity=0.170 Sum_probs=127.9
Q ss_pred ccEEEecCchhhhhhhh-----hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~-----~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~ 148 (287)
|+.++++|++|.|.... +...+++.|||++++|+.+||||.||||||||.|+|+|+++ |++| +.++|+...
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~ 78 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH 78 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence 45799999999985432 12448899999999999999999999999999999999999 9999 999998764
Q ss_pred HH---hhhCCCCCCCChhHH-----HHHHHHHhcCCceeec-----------------cCCccCCCCCCCceeccccceE
Q 023106 149 EA---HARRGAPWTFNPLLL-----LNCLKNLRNQGSVYAP-----------------SFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 149 ~~---~~~~~~~~~~~~~~~-----~tv~e~l~~~~~~~~~-----------------~~~~~~~~~~~~~LSgGekqRv 203 (287)
.. ++...+-+.||+++- +.+-.-+..+..+... ..-.+..+-++..||-||||||
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV 158 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV 158 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence 32 222334455555431 2222222222111100 0111234568899999999999
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
++ .+|.++|.|| .+++.+.++.+. -|+|+.++..+.. .++ |.+++.|.+.++.
T Consensus 159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 159 ALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhh
Confidence 88 8999999999 445555555443 3699999999877 444 8899999998875
Q ss_pred H
Q 023106 257 K 257 (287)
Q Consensus 257 ~ 257 (287)
.
T Consensus 239 a 239 (267)
T COG4167 239 A 239 (267)
T ss_pred c
Confidence 3
No 323
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.89 E-value=5.2e-24 Score=206.43 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=104.7
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
|.+|.++|+++.|+++. +|+++||+|.+|++|||||+||||||||||+|+|.+. |++| |...+. ....+..
T Consensus 1 m~~i~~~~ls~~~g~~~----l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~i~~~~~-~~v~~l~ 72 (530)
T COG0488 1 MSMITLENLSLAYGDRP----LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGEVTRPKG-LRVGYLS 72 (530)
T ss_pred CceEEEeeeEEeeCCce----eecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCeEeecCC-ceEEEeC
Confidence 56899999999999887 9999999999999999999999999999999999999 9999 665542 1111111
Q ss_pred CCCCCCCChhHHHHHHHHHhcC-------------------------------------C-----c----eeeccCCccC
Q 023106 154 RGAPWTFNPLLLLNCLKNLRNQ-------------------------------------G-----S----VYAPSFDHGV 187 (287)
Q Consensus 154 ~~~~~~~~~~~~~tv~e~l~~~-------------------------------------~-----~----~~~~~~~~~~ 187 (287)
+..+.... .++++.+..+ . . +..-.+. .
T Consensus 73 Q~~~~~~~----~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~--~ 146 (530)
T COG0488 73 QEPPLDPE----KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP--D 146 (530)
T ss_pred CCCCcCCC----ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC--c
Confidence 11111100 0111111000 0 0 0000111 1
Q ss_pred CCCCCCceeccccceEEE-----ecCCEEeEec-------chHHH----HHhccCCeEEEEcChHHHHH
Q 023106 188 GDPVEDDILVGLQHKVVI-----VDGNYLFLDG-------GVWKD----VSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I-----~~p~lLllDE-------~~~~~----l~~~~~~~i~vtHd~~~~~~ 240 (287)
.++.+.+||||||.||+| .+|++||||| +.+.- |.++...+|+||||++++..
T Consensus 147 ~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~ 215 (530)
T COG0488 147 EDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDN 215 (530)
T ss_pred ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHH
Confidence 167899999999999988 8999999999 23333 33333346899999999976
No 324
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.89 E-value=2.2e-24 Score=182.23 Aligned_cols=113 Identities=19% Similarity=0.320 Sum_probs=90.2
Q ss_pred cCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCC
Q 023106 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWT 159 (287)
Q Consensus 81 ~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~ 159 (287)
.||+|.|++.. +++++ |++++|++++|+||||||||||+++|+|+++ |++| +.++|..+ .+.
T Consensus 4 ~~l~~~~~~~~----~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i---------~~~ 66 (177)
T cd03222 4 PDCVKRYGVFF----LLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITP---------VYK 66 (177)
T ss_pred CCeEEEECCEE----EEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEE---------EEE
Confidence 58899998765 78884 9999999999999999999999999999999 9999 88887431 112
Q ss_pred CChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHh
Q 023106 160 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSS 223 (287)
Q Consensus 160 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~ 223 (287)
+|.. .||+||+||++| .+|++++||| .+.+.+.+
T Consensus 67 ~q~~------------------------------~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 67 PQYI------------------------------DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRR 116 (177)
T ss_pred cccC------------------------------CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 2110 099999999988 8999999999 34455555
Q ss_pred ccC----CeEEEEcChHHHHH
Q 023106 224 MFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 224 ~~~----~~i~vtHd~~~~~~ 240 (287)
+.. .++++|||++++..
T Consensus 117 ~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 117 LSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHcCCCEEEEEECCHHHHHH
Confidence 432 24799999999875
No 325
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=1.3e-24 Score=175.11 Aligned_cols=160 Identities=18% Similarity=0.152 Sum_probs=118.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhh-hC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHA-RR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~-~~ 154 (287)
++.++||+.+.++.. .|.++||+|.+|||+-|+||+|||||||+..+.|.+...+..+| +.++++.+..... ++
T Consensus 2 ~l~l~nvsl~l~g~c----LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGSC----LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77 (213)
T ss_pred ceeeeeeeecCCCce----EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence 588999999888877 89999999999999999999999999999999999985455578 8889887654332 22
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCceeeccCC--------------ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD--------------HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~--------------~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
.++..||+..+ ++|.+|+.+........-. .+..++.|.+||||||.||++ .+|++++
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lL 157 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALL 157 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceee
Confidence 35556666543 7888998875432211000 123367899999999999988 8999999
Q ss_pred Eecch---------------HHHHHhccCCeEEEEcChHHHHH
Q 023106 213 LDGGV---------------WKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 213 lDE~~---------------~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
|||++ +..++..---+++||||...+..
T Consensus 158 LDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvpa 200 (213)
T COG4136 158 LDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPA 200 (213)
T ss_pred eCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCC
Confidence 99922 22222222225799999988764
No 326
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.89 E-value=2.8e-24 Score=194.47 Aligned_cols=163 Identities=10% Similarity=0.169 Sum_probs=111.8
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
.+.|+++|+++. +.. +|+++||+|.+|+++||+|+||||||||+++|+|+++ |++| +.++|.
T Consensus 37 ~~~l~i~nls~~--~~~----vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g~-------- 99 (282)
T cd03291 37 DNNLFFSNLCLV--GAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSGR-------- 99 (282)
T ss_pred CCeEEEEEEEEe--ccc----ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCE--------
Confidence 347999999985 333 8999999999999999999999999999999999999 9999 888772
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceee-------c--cCC----------ccCCCCCCCceeccccceEEE-----ec
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYA-------P--SFD----------HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~-------~--~~~----------~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
+.+.+|...+ .++.+|+.+...... . ... .......+..||+||+||++| .+
T Consensus 100 --i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~ 177 (282)
T cd03291 100 --ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKD 177 (282)
T ss_pred --EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 1111221110 255666554321100 0 000 001123467899999999988 89
Q ss_pred CCEEeEec-----------chHHHH-HhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDV-SSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l-~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
|+++|||| .+++.+ ..+.. .++++|||++.+.. +++ |+++..|++.++.
T Consensus 178 p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 178 ADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999 233332 22222 24699999998754 433 6777788877764
No 327
>PLN03130 ABC transporter C family member; Provisional
Probab=99.89 E-value=2.3e-24 Score=232.33 Aligned_cols=176 Identities=18% Similarity=0.211 Sum_probs=133.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|.+.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++| |.+||.++... ..
T Consensus 1237 ~I~f~nVsf~Y~~~~--~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1237 SIKFEDVVLRYRPEL--PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred cEEEEEEEEEeCCCC--CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCCHHHH
Confidence 599999999996431 138999999999999999999999999999999999999 9999 99999876431 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee----------------ccCCccCC---CCCCCceeccccceEEE-----e
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA----------------PSFDHGVG---DPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~----------------~~~~~~~~---~~~~~~LSgGekqRv~I-----~ 206 (287)
+..+..++|++.+ -|+.+||..+..... .....+.. ......||||||||++| .
T Consensus 1312 R~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr 1391 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR 1391 (1622)
T ss_pred HhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 3445556665543 588899876532100 00000111 12345799999999998 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+|++||||| .+.+.|++.+.. +|+|+|.++.+.. |++ |++++.|+++++..
T Consensus 1392 ~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1392 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999 455666666543 4799999999988 666 89999999999864
No 328
>PLN03232 ABC transporter C family member; Provisional
Probab=99.89 E-value=2.2e-24 Score=231.95 Aligned_cols=176 Identities=18% Similarity=0.198 Sum_probs=132.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. .++|+|+||+|++|+.+||+|++|||||||+++|.|+++ |++| |.+||.++... ..
T Consensus 1234 ~I~f~nVsf~Y~~~~--~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGL--PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred cEEEEEEEEEECCCC--CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCHHHH
Confidence 599999999995421 138999999999999999999999999999999999999 9999 99999886432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee----------------ccCCccCC---CCCCCceeccccceEEE-----e
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA----------------PSFDHGVG---DPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~----------------~~~~~~~~---~~~~~~LSgGekqRv~I-----~ 206 (287)
+..+..++|++.+ -|+.+||..+..... .....+.. ......||||||||++| .
T Consensus 1309 R~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr 1388 (1495)
T PLN03232 1309 RRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR 1388 (1495)
T ss_pred HhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh
Confidence 3345555665443 588888876432100 00000111 22345799999999998 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+|++||||| .+.+.|++.++. +|+|+|.++.+.. |++ |++++.|+++++..
T Consensus 1389 ~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1389 RSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999 455566666543 5799999999988 665 89999999999864
No 329
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.89 E-value=7.2e-24 Score=226.74 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=118.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eee-CCCCHHH---Hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSF-DSQDPKE---AH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~-~g~~~~~---~~ 151 (287)
.|+++||++.|+... ...+|+|+||+|++|+++||+||||||||||+++|+|++. |++| |.+ +|.++.. ..
T Consensus 382 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~~~~~ 457 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK-DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDINLKW 457 (1466)
T ss_pred cEEEEEEEEEcCCCC-CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhCCHHH
Confidence 599999999997532 1238999999999999999999999999999999999999 9999 888 4566532 12
Q ss_pred hhCCCCCCCChhHH--HHHHHHHhcCCcee----------e---------------------------------------
Q 023106 152 ARRGAPWTFNPLLL--LNCLKNLRNQGSVY----------A--------------------------------------- 180 (287)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~~~----------~--------------------------------------- 180 (287)
.+..+++++|.+.+ .|+.+|+.++.... .
T Consensus 458 lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 537 (1466)
T PTZ00265 458 WRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM 537 (1466)
T ss_pred HHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhc
Confidence 23445666665443 59999998863100 0
Q ss_pred ----ccC---------------------Ccc---CCCCCCCceeccccceEEE-----ecCCEEeEec-----------c
Q 023106 181 ----PSF---------------------DHG---VGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------G 216 (287)
Q Consensus 181 ----~~~---------------------~~~---~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~ 216 (287)
... ..+ ........|||||||||+| .+|++||||| .
T Consensus 538 ~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~ 617 (1466)
T PTZ00265 538 RKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL 617 (1466)
T ss_pred ccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 000 000 0124567899999999998 9999999999 4
Q ss_pred hHHHHHhccC----CeEEEEcChHHHHH
Q 023106 217 VWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 217 ~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+.+.|.++.. .+|+|||+++.+..
T Consensus 618 i~~~L~~~~~~~g~TvIiIsHrls~i~~ 645 (1466)
T PTZ00265 618 VQKTINNLKGNENRITIIIAHRLSTIRY 645 (1466)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCHHHHHh
Confidence 5566666542 35799999998854
No 330
>PRK13409 putative ATPase RIL; Provisional
Probab=99.89 E-value=3.2e-24 Score=211.76 Aligned_cols=148 Identities=16% Similarity=0.211 Sum_probs=109.8
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
.++|+++|+++.|++. .|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++ .
T Consensus 338 ~~~l~~~~ls~~~~~~-----~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~-~-------- 400 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-----SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE-L-------- 400 (590)
T ss_pred ceEEEEcceEEEECCE-----EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe-e--------
Confidence 3579999999999763 5899999999999999999999999999999999999 9999 6654 1
Q ss_pred CCCCCCCChh---HHHHHHHHHhcCCceee---------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec
Q 023106 154 RGAPWTFNPL---LLLNCLKNLRNQGSVYA---------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG 215 (287)
Q Consensus 154 ~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE 215 (287)
.+.+.+|.. ...++.+++.+...... ..+. ....++.+.+|||||||||+| .+|++|||||
T Consensus 401 -~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDE 479 (590)
T PRK13409 401 -KISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDE 479 (590)
T ss_pred -eEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 122222221 12577777765311100 0011 123467899999999999988 8999999999
Q ss_pred -----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 216 -----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 -----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.+++.|+++.+ .+++||||++++..
T Consensus 480 Pt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~ 519 (590)
T PRK13409 480 PSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDY 519 (590)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 45666666533 24799999999876
No 331
>PLN03073 ABC transporter F family; Provisional
Probab=99.89 E-value=1.4e-24 Score=218.13 Aligned_cols=166 Identities=14% Similarity=0.112 Sum_probs=110.8
Q ss_pred ccEEEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhh
Q 023106 75 IPVVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~ 152 (287)
.++|+++||++.|++ .. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.+++..
T Consensus 506 ~~~L~~~~ls~~y~~~~~----il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~~~------ 572 (718)
T PLN03073 506 PPIISFSDASFGYPGGPL----LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSAKV------ 572 (718)
T ss_pred CceEEEEeeEEEeCCCCe----eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECCce------
Confidence 358999999999964 33 8999999999999999999999999999999999999 9999 7665421
Q ss_pred hCCCCCCCChh-HHHHHHHH----H-h-cCCc--------eeeccCCccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 153 RRGAPWTFNPL-LLLNCLKN----L-R-NQGS--------VYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 153 ~~~~~~~~~~~-~~~tv~e~----l-~-~~~~--------~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
.+++.+|.. ..+++.++ + . +... +....+.....++.+..|||||||||+| .+|++||
T Consensus 573 --~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLL 650 (718)
T PLN03073 573 --RMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILL 650 (718)
T ss_pred --eEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 111111111 00000011 0 0 0000 0001111123457889999999999988 8999999
Q ss_pred Eec-----------chHHHHHhccCCeEEEEcChHHHHH---HHH----HHHh-cCCCcHHH
Q 023106 213 LDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDV 255 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~---rvi----gr~i-~~G~~~~~ 255 (287)
||| .+++.+.+.-..+|+||||++++.. |++ |+++ ..|+..+.
T Consensus 651 LDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 651 LDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999 3344444432335799999999876 333 5655 45655543
No 332
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.89 E-value=7.3e-24 Score=226.69 Aligned_cols=177 Identities=15% Similarity=0.189 Sum_probs=132.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--------------------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-------------------- 136 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-------------------- 136 (287)
-|+++||+++|++.. ..++|+|+||+|++|+++||+||||||||||+++|+|++. |
T Consensus 1165 ~I~f~nVsF~Y~~~~-~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd---p~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRP-NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD---LKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred eEEEEEEEEECCCCC-CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC---Ccccccccccccccccccccc
Confidence 499999999997432 1238999999999999999999999999999999999998 6
Q ss_pred ----------------------------------Ccc-eeeCCCCHHHH---hhhCCCCCCCChhHH--HHHHHHHhcCC
Q 023106 137 ----------------------------------QKA-SSFDSQDPKEA---HARRGAPWTFNPLLL--LNCLKNLRNQG 176 (287)
Q Consensus 137 ----------------------------------~~G-i~~~g~~~~~~---~~~~~~~~~~~~~~~--~tv~e~l~~~~ 176 (287)
++| |.++|.++... ..+..+.+++|.+.+ .|+.|||.++.
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGK 1320 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCC
Confidence 589 99999987542 234456777777654 79999999974
Q ss_pred cee-------------ec----cCCccCC---CCCCCceeccccceEEE-----ecCCEEeEec-----------chHHH
Q 023106 177 SVY-------------AP----SFDHGVG---DPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKD 220 (287)
Q Consensus 177 ~~~-------------~~----~~~~~~~---~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~ 220 (287)
.-. .. .+..+.. ......||||||||++| .+|++||||| .+.+.
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 210 00 0001111 12455799999999999 8999999999 45555
Q ss_pred HHhcc---C-CeEEEEcChHHHHH--HHH--------HHHh-cCCCcHHHHH
Q 023106 221 VSSMF---D-EKWFIEVDLDTAMQ--RVL--------KRHI-STGKPPDVAK 257 (287)
Q Consensus 221 l~~~~---~-~~i~vtHd~~~~~~--rvi--------gr~i-~~G~~~~~~~ 257 (287)
|.++. + .+|+|+|.+..+.. +++ |+++ +.|+.+++..
T Consensus 1401 L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1401 IVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 66653 2 35799999999877 443 3545 6899888864
No 333
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.88 E-value=5.6e-24 Score=198.47 Aligned_cols=176 Identities=21% Similarity=0.256 Sum_probs=130.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
-|+++||++.|+... ++|+||||++.+|+.+||+||+|+||||++|+|..... ..+| |.+||++++.. ..
T Consensus 537 ~i~fsnvtF~Y~p~k---~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd---v~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGK---PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD---VNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred eEEEEEeEEecCCCC---ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh---ccCceEEEcCchHHHHHHHHH
Confidence 599999999997643 49999999999999999999999999999999999999 8999 99999997543 23
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-----------------ccCCcc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-----------------PSFDHG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-----------------~~~~~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
+..++.++|+..+ .|++.||+++..-.. ..|..+ ..-...-.|||||||||+|
T Consensus 611 Rs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL 690 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL 690 (790)
T ss_pred HHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence 3445555555433 567777776532110 011111 1122345699999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH-H-HH----HHHhcCCCcHHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ-R-VL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~-r-vi----gr~i~~G~~~~~~~~ 258 (287)
.+|.+++||| .+...+.+++.. .|+|.|-+..+.. . ++ |+++++|+-++++..
T Consensus 691 K~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 691 KAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred cCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc
Confidence 8999999999 233344455443 6899999998877 2 22 899999999998754
No 334
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.88 E-value=9e-24 Score=184.96 Aligned_cols=150 Identities=21% Similarity=0.321 Sum_probs=107.2
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHH-----HHHHHHHhcC
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLL-----LNCLKNLRNQ 175 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~-----~tv~e~l~~~ 175 (287)
|+|++|+++||+|+||||||||+++|+|+++ |++| +.++|.++... +..+.+.+|...+ .++.+|+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~--~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKG--WRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHh--hCcEEEecccccccCCCCccHHHHHHhc
Confidence 5788999999999999999999999999999 9999 99999876432 2334454544321 5777887654
Q ss_pred Ccee-----ecc-------------CC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHH
Q 023106 176 GSVY-----APS-------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKD 220 (287)
Q Consensus 176 ~~~~-----~~~-------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~ 220 (287)
.... ... +. ....++.+.+||+||+||++| .+|+++|+|| .+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~ 155 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTEL 155 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 2100 000 00 012356788999999999988 8999999999 45555
Q ss_pred HHhccC---CeEEEEcChHHHHH---HHH---HHHhcCCCcHHHH
Q 023106 221 VSSMFD---EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 256 (287)
Q Consensus 221 l~~~~~---~~i~vtHd~~~~~~---rvi---gr~i~~G~~~~~~ 256 (287)
|.++.+ ..|++|||++++.. +++ |+++..|+++++.
T Consensus 156 l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 156 FIELAGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHHhc
Confidence 555543 24799999998875 333 6777778777664
No 335
>PTZ00243 ABC transporter; Provisional
Probab=99.88 E-value=1.1e-23 Score=226.74 Aligned_cols=176 Identities=17% Similarity=0.194 Sum_probs=131.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
.|+++||+++|.+.. ..+|+||||+|++|+.|||+|++|||||||+++|.|+++ |++| |.+||.++.. ...
T Consensus 1308 ~I~f~nVsf~Y~~~~--~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGL--PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred eEEEEEEEEEeCCCC--CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCHHHH
Confidence 499999999996531 238999999999999999999999999999999999999 9999 9999987643 223
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCcee------------ec----cCCccCC---CCCCCceeccccceEEE-----e
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY------------AP----SFDHGVG---DPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~------------~~----~~~~~~~---~~~~~~LSgGekqRv~I-----~ 206 (287)
+..+.+++|++.+ -|+.+||....... .. ....+.. ......||||||||++| .
T Consensus 1383 R~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~ 1462 (1560)
T PTZ00243 1383 RRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK 1462 (1560)
T ss_pred HhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc
Confidence 3445666666544 58889986532110 00 0000111 12345799999999998 5
Q ss_pred c-CCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 207 D-GNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ~-p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+ |++||||| .+.+.|.+.++. +|+|+|.++.+.. +++ |++++.|+++++..
T Consensus 1463 ~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1463 KGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 4 89999999 345556665543 4799999999988 665 89999999999864
No 336
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.88 E-value=2.4e-24 Score=215.36 Aligned_cols=177 Identities=18% Similarity=0.216 Sum_probs=127.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----H
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~ 150 (287)
+|+++|+++.|++......+|+++||++++|++++|+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~~~~~~~~ 80 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVATLDADAL 80 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcCcCCHHHH
Confidence 79999999999642111238999999999999999999999999999999999999 9999 8999976432 1
Q ss_pred --hhhCCCCCCCChhHH---HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 151 --HARRGAPWTFNPLLL---LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 151 --~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
..++.+.+.+|...+ .++.+|+.+...... . .+. ....++.+.+||+||+||+.|
T Consensus 81 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~ 160 (648)
T PRK10535 81 AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALM 160 (648)
T ss_pred HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 123445555554432 467777764211100 0 000 112367889999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+.+.+.++.+ ..+++||+++.+.. |++ |++++.|++++..
T Consensus 161 ~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 161 NGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 8999999999 44555555432 24699999998754 433 7777888877653
No 337
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.88 E-value=1.3e-23 Score=226.38 Aligned_cols=176 Identities=20% Similarity=0.206 Sum_probs=132.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ..+|+|+||+|++|+.+||+|++|||||||+++|.++++ |++| |.+||.++... ..
T Consensus 1284 ~I~f~nVsf~Y~~~~--~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDL--DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred cEEEEEEEEEeCCCC--cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccCHHHH
Confidence 599999999996532 138999999999999999999999999999999999999 9999 99999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCcee------------e----ccCCccCC---CCCCCceeccccceEEE-----e
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY------------A----PSFDHGVG---DPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~------------~----~~~~~~~~---~~~~~~LSgGekqRv~I-----~ 206 (287)
+..+..++|++.+ -|+.+||....... . .....+.. ......||||||||++| .
T Consensus 1359 R~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr 1438 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR 1438 (1522)
T ss_pred HhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc
Confidence 3345555665543 58888886321110 0 00001111 12345699999999998 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+|++||||| .+.+.|++.+.. +|+|+|.++.+.. |++ |++++.|+++++..
T Consensus 1439 ~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1439 KTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999 455566666543 4799999999988 666 89999999999864
No 338
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.5e-23 Score=173.71 Aligned_cols=121 Identities=20% Similarity=0.314 Sum_probs=94.3
Q ss_pred ecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hhhCC
Q 023106 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HARRG 155 (287)
Q Consensus 80 ~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~~~~ 155 (287)
++++++.|.+.. +++++||++.+|++++|+|+||||||||+++|+|+++ |++| +.++|.++... .....
T Consensus 2 ~~~~~~~~~~~~----~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~ 74 (157)
T cd00267 2 IENLSFRYGGRT----ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEELRRR 74 (157)
T ss_pred eEEEEEEeCCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHHHhc
Confidence 578888887654 8999999999999999999999999999999999999 9999 88888654211 01111
Q ss_pred CCCCCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHH
Q 023106 156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWK 219 (287)
Q Consensus 156 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~ 219 (287)
+.+.+| ||+||+||+.| .+|++++||| .+.+
T Consensus 75 i~~~~q---------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~ 121 (157)
T cd00267 75 IGYVPQ---------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLE 121 (157)
T ss_pred eEEEee---------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 222222 99999999988 8999999999 3445
Q ss_pred HHHhccC---CeEEEEcChHHHHH
Q 023106 220 DVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 220 ~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+.++.. ..+++||+++++..
T Consensus 122 ~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 122 LLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHH
Confidence 5554433 24699999998864
No 339
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.87 E-value=2.1e-23 Score=185.33 Aligned_cols=133 Identities=16% Similarity=0.228 Sum_probs=91.1
Q ss_pred ccccccccc-----CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChh---HHH
Q 023106 96 PTSALASNV-----NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPL---LLL 166 (287)
Q Consensus 96 ~l~~vsl~i-----~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~---~~~ 166 (287)
.+.+++|++ .+|+++||+||||||||||+++|+|+++ |++| +.++|..+ .+.+|.. ...
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~~i---------~~~~q~~~~~~~~ 76 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELDTV---------SYKPQYIKADYEG 76 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCceE---------EEecccccCCCCC
Confidence 445555555 5899999999999999999999999999 9999 88888522 1111111 114
Q ss_pred HHHHHHhcCCcee----------eccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHH
Q 023106 167 NCLKNLRNQGSVY----------APSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWK 219 (287)
Q Consensus 167 tv~e~l~~~~~~~----------~~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~ 219 (287)
++.+++....... ...+. ....++.+.+|||||+|||+| .+|+++|||| .+++
T Consensus 77 tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~ 156 (246)
T cd03237 77 TVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK 156 (246)
T ss_pred CHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 5556554321100 00010 112357889999999999988 8999999999 4455
Q ss_pred HHHhccC----CeEEEEcChHHHHH
Q 023106 220 DVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 220 ~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.|.++.. .+|++|||++++..
T Consensus 157 ~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 157 VIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 5555532 25799999998875
No 340
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.4e-23 Score=173.46 Aligned_cols=132 Identities=19% Similarity=0.230 Sum_probs=102.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhh--h
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHA--R 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~--~ 153 (287)
+++++||+..-+... ++.++||++.+||++-|.||||||||||+|+|+|++. |++| |.+.|..+...+. .
T Consensus 2 ~L~a~~L~~~R~e~~----lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 2 MLEAENLSCERGERT----LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYH 74 (209)
T ss_pred cchhhhhhhccCcce----eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhHH
Confidence 478899998888776 9999999999999999999999999999999999999 9999 8998876533221 1
Q ss_pred CCCCC---CCChhHHHHHHHHHhcCCceeeccCC------------ccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 154 RGAPW---TFNPLLLLNCLKNLRNQGSVYAPSFD------------HGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 154 ~~~~~---~~~~~~~~tv~e~l~~~~~~~~~~~~------------~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
+.+-+ ..-....+|++||+.|...+....-. .+..+.++.+||-|||+||+| ..+++.||
T Consensus 75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiL 154 (209)
T COG4133 75 QALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWIL 154 (209)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceee
Confidence 11111 11122338999999986554432000 134578899999999999998 77899999
Q ss_pred ec
Q 023106 214 DG 215 (287)
Q Consensus 214 DE 215 (287)
||
T Consensus 155 DE 156 (209)
T COG4133 155 DE 156 (209)
T ss_pred cC
Confidence 99
No 341
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.87 E-value=6.9e-23 Score=182.91 Aligned_cols=153 Identities=17% Similarity=0.170 Sum_probs=101.4
Q ss_pred cCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-ee-----------eCCCCHH
Q 023106 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SS-----------FDSQDPK 148 (287)
Q Consensus 81 ~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~-----------~~g~~~~ 148 (287)
.+|+++|++.. .+|+|+|+ +.+|++++|+||||||||||+++|+|+++ |++| +. ++|.++.
T Consensus 4 ~~~~~~y~~~~---~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 4 DEPVHRYGPNS---FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred cCcceeecCcc---hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEeeccccchhhhhccCchhh
Confidence 37899997542 28999995 99999999999999999999999999999 9999 64 6777654
Q ss_pred HHh---h--hCCCCCCCChhHH--HHHHHHHhcCCcee---------eccCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 149 EAH---A--RRGAPWTFNPLLL--LNCLKNLRNQGSVY---------APSFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 149 ~~~---~--~~~~~~~~~~~~~--~tv~e~l~~~~~~~---------~~~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
... . ...+.+.++.... .++.+++....... ...+. ....++.+..||+||+||+.| .
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 156 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALAR 156 (255)
T ss_pred hhhHHhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 321 1 1112222221110 12223332211000 00011 112356788999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+|+++|+|| .+.+.+.++.+ ..|++|||++.+..
T Consensus 157 ~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~ 204 (255)
T cd03236 157 DADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDY 204 (255)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence 999999999 34455555433 24799999998875
No 342
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.86 E-value=1.1e-23 Score=224.88 Aligned_cols=177 Identities=16% Similarity=0.199 Sum_probs=124.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
+++++||++.|+.+.....+|+|||+++++|+++||+||||||||||+++|+|+++...+++| +.++|.++... .++.
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~-~~~~ 837 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSS-FQRS 837 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChh-hhcc
Confidence 589999999985322223499999999999999999999999999999999999751124678 89999876322 2333
Q ss_pred CCCCCChhH---HHHHHHHHhcCCceeecc-CC-----------------ccCCCCCCC----ceeccccceEEE-----
Q 023106 156 APWTFNPLL---LLNCLKNLRNQGSVYAPS-FD-----------------HGVGDPVED----DILVGLQHKVVI----- 205 (287)
Q Consensus 156 ~~~~~~~~~---~~tv~e~l~~~~~~~~~~-~~-----------------~~~~~~~~~----~LSgGekqRv~I----- 205 (287)
+++++|... .+|+.|++.+...+..+. .. ....++.++ .|||||||||.|
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHH
Confidence 555555432 278999998753322110 00 012244444 799999999988
Q ss_pred ecCC-EEeEec-----------chHHHHHhccCC---eEEEEcChHHHH-H---HHH----H-HHhcCCCcHH
Q 023106 206 VDGN-YLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAM-Q---RVL----K-RHISTGKPPD 254 (287)
Q Consensus 206 ~~p~-lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~-~---rvi----g-r~i~~G~~~~ 254 (287)
.+|+ +|+||| .+++.|+++.+. +|+++|+++... . +++ | ++++.|++.+
T Consensus 918 ~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 8996 999999 456666665432 469999998642 2 444 5 8888888743
No 343
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.86 E-value=3.6e-23 Score=203.35 Aligned_cols=166 Identities=17% Similarity=0.202 Sum_probs=111.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
.|+++||+++|++.. .+|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 322 ~i~~~~v~f~y~~~~---~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 395 (547)
T PRK10522 322 TLELRNVTFAYQDNG---FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVTAEQPEDY 395 (547)
T ss_pred eEEEEEEEEEeCCCC---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCCCCHHHH
Confidence 599999999996422 28999999999999999999999999999999999999 9999 8999986532 122
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCC--c----eeeccCCcc--CCCC--CCCceeccccceEEE-----ecCCEEeEec
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQG--S----VYAPSFDHG--VGDP--VEDDILVGLQHKVVI-----VDGNYLFLDG 215 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~--~----~~~~~~~~~--~~~~--~~~~LSgGekqRv~I-----~~p~lLllDE 215 (287)
+..+.+.+|+..+ .++.+|-.... . +........ ..+. ....||||||||++| .+|+++||||
T Consensus 396 ~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE 475 (547)
T PRK10522 396 RKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475 (547)
T ss_pred hhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 3345555555433 23333300000 0 000000000 0011 135799999999998 8999999999
Q ss_pred -----------chHHHHHhcc---C-CeEEEEcChHHHHH--HHH----HHHhc
Q 023106 216 -----------GVWKDVSSMF---D-EKWFIEVDLDTAMQ--RVL----KRHIS 248 (287)
Q Consensus 216 -----------~~~~~l~~~~---~-~~i~vtHd~~~~~~--rvi----gr~i~ 248 (287)
.+.+.+.+.. + .+|+|||+.+.... +++ |++++
T Consensus 476 ~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 476 WAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529 (547)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEE
Confidence 3344444332 2 35799999977655 443 55555
No 344
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.86 E-value=3.2e-22 Score=187.77 Aligned_cols=177 Identities=16% Similarity=0.195 Sum_probs=131.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|.++++++.=.+. ..++++++||++.+|+.+|||||||||||||.|+|.|..+ |.+| +.+||.++... ..
T Consensus 334 ~L~Ve~l~~~PPg~--~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~---p~~G~VRLDga~l~qWd~e~l 408 (580)
T COG4618 334 ALSVERLTAAPPGQ--KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP---PTSGSVRLDGADLRQWDREQL 408 (580)
T ss_pred eeeEeeeeecCCCC--CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc---cCCCcEEecchhhhcCCHHHh
Confidence 69999998754332 3458999999999999999999999999999999999999 9999 99999887543 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCc-ee-------------------e-ccCCccCCCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGS-VY-------------------A-PSFDHGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~-~~-------------------~-~~~~~~~~~~~~~~LSgGekqRv~I---- 205 (287)
-+.++|.+|+-.+ -|+.|||.-... .. . ..|+.... .--..||||||||+.+
T Consensus 409 G~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG-~~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 409 GRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIG-EGGATLSGGQRQRIALARAL 487 (580)
T ss_pred ccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccC-CCCCCCCchHHHHHHHHHHH
Confidence 3346777776554 588899875431 10 0 01221111 2345799999999999
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~~ 259 (287)
.+|.+++||| .+.+.|.+.... +|+|+|-...+.. +++ |++-..|+.+++...-
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 8999999999 234444444332 4799999998877 554 8888899999987653
No 345
>PLN03073 ABC transporter F family; Provisional
Probab=99.86 E-value=1.7e-22 Score=203.18 Aligned_cols=176 Identities=13% Similarity=0.090 Sum_probs=110.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC-----HH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD-----PK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~-----~~ 148 (287)
+.+|+++|+++.|++.. +|+|+||+|.+|+++||||+||||||||+++|+|......|.+| +.+.++. ..
T Consensus 175 ~~~I~i~nls~~y~~~~----ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t 250 (718)
T PLN03073 175 IKDIHMENFSISVGGRD----LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTT 250 (718)
T ss_pred ceeEEEceEEEEeCCCE----EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCC
Confidence 44799999999998766 99999999999999999999999999999999986410127777 6543332 10
Q ss_pred H--H----------hhhCCCCCCCCh----------------------hH----HHHHHHHHhcCCc----------eee
Q 023106 149 E--A----------HARRGAPWTFNP----------------------LL----LLNCLKNLRNQGS----------VYA 180 (287)
Q Consensus 149 ~--~----------~~~~~~~~~~~~----------------------~~----~~tv~e~l~~~~~----------~~~ 180 (287)
. . .....+.+.++. .. +..+++.+..... +..
T Consensus 251 ~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~ 330 (718)
T PLN03073 251 ALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAG 330 (718)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 0 0 000000000000 00 0111111111000 001
Q ss_pred ccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHH---H
Q 023106 181 PSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ---R 241 (287)
Q Consensus 181 ~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~---r 241 (287)
..+.....++.+.+|||||||||+| .+|++||||| .+.+.|.++...+|+||||++++.. +
T Consensus 331 lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~ 410 (718)
T PLN03073 331 LSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTD 410 (718)
T ss_pred CCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCE
Confidence 1111123467789999999999988 8999999999 4455555553346799999999876 4
Q ss_pred HH----HHHh-cCCCcHH
Q 023106 242 VL----KRHI-STGKPPD 254 (287)
Q Consensus 242 vi----gr~i-~~G~~~~ 254 (287)
++ |++. ..|+..+
T Consensus 411 i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 411 ILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred EEEEECCEEEEeCCCHHH
Confidence 43 5654 4565543
No 346
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.86 E-value=1.6e-22 Score=202.43 Aligned_cols=149 Identities=11% Similarity=0.023 Sum_probs=104.0
Q ss_pred cEEEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 76 PVVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 76 ~~i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
.+|+++||++.|++ .. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.+++..
T Consensus 450 ~~i~~~nv~~~~~~~~~----il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~~~------- 515 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDV----LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPAKG------- 515 (659)
T ss_pred CeEEEEeeEEECCCCCe----eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecCCC-------
Confidence 36999999999953 33 8999999999999999999999999999999999998 9999 6665421
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceee---ccCC--------------c--------cCCCCCCCceeccccceEEE-
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYA---PSFD--------------H--------GVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~---~~~~--------------~--------~~~~~~~~~LSgGekqRv~I- 205 (287)
.+.+.+|...+ .++.+|+.++..... +... . +........||||||||++|
T Consensus 516 -~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iA 594 (659)
T TIGR00954 516 -KLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMA 594 (659)
T ss_pred -cEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHH
Confidence 12233332211 366677765421100 0000 0 00011347899999999998
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAM 239 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~ 239 (287)
.+|+++|||| .+.+.+.+.-...|++||+++.+.
T Consensus 595 Ral~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~ 643 (659)
T TIGR00954 595 RLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWK 643 (659)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHH
Confidence 8999999999 344445443223579999999764
No 347
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.86 E-value=3.2e-22 Score=196.95 Aligned_cols=160 Identities=17% Similarity=0.104 Sum_probs=107.0
Q ss_pred EEEecCchhhhhhhhh-ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hh
Q 023106 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~-~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~ 151 (287)
.|+++||+++|++... ...+|+|+||++++|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---p~~G~i~~~g~~i~~~~~~~ 413 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI---PQEGEILLDGAAVSADSRDD 413 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 5999999999975311 1238999999999999999999999999999999999999 9999 8999986532 12
Q ss_pred hhCCCCCCCChhHH--HHHHHHHhcCCc----------eeeccCCc--cCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 152 ARRGAPWTFNPLLL--LNCLKNLRNQGS----------VYAPSFDH--GVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~----------~~~~~~~~--~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
.+..+.+++|+..+ .++.+|...... .....+-. .........||||||||++| .+|+++|
T Consensus 414 ~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ili 493 (555)
T TIGR01194 414 YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILL 493 (555)
T ss_pred HHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 22334555555433 344444211000 00000000 00111236799999999998 8999999
Q ss_pred Eec-----------chHHHHH-hcc--C-CeEEEEcChHHHH
Q 023106 213 LDG-----------GVWKDVS-SMF--D-EKWFIEVDLDTAM 239 (287)
Q Consensus 213 lDE-----------~~~~~l~-~~~--~-~~i~vtHd~~~~~ 239 (287)
||| .+.+.+. .+. + ..++|||+++...
T Consensus 494 lDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~ 535 (555)
T TIGR01194 494 FDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE 535 (555)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH
Confidence 999 2333332 221 2 3579999998654
No 348
>PRK13409 putative ATPase RIL; Provisional
Probab=99.86 E-value=2.7e-22 Score=198.17 Aligned_cols=152 Identities=15% Similarity=0.141 Sum_probs=106.4
Q ss_pred CchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-ee-----------eCCCCHHH
Q 023106 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SS-----------FDSQDPKE 149 (287)
Q Consensus 82 ~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~-----------~~g~~~~~ 149 (287)
+++++|++.. .+|++++ .+.+|+++||+||||||||||+|+|+|+++ |+.| +. ++|.++..
T Consensus 78 ~~~~~yg~~~---~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 78 EPVHRYGVNG---FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred CceEEecCCc---eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCccccCCCcHHHHHHHhCChHHHH
Confidence 4788998632 2899999 899999999999999999999999999999 9999 65 78887643
Q ss_pred Hhh-----hCCCCC----CCChhHH--HHHHHHHhcCCcee-----eccCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 150 AHA-----RRGAPW----TFNPLLL--LNCLKNLRNQGSVY-----APSFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 150 ~~~-----~~~~~~----~~~~~~~--~tv~e~l~~~~~~~-----~~~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
... ...+.+ .++.+.+ .++.+++....... ...+. ....++.+.+|||||+|||+| .+
T Consensus 151 ~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~ 230 (590)
T PRK13409 151 YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRD 230 (590)
T ss_pred HHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 211 111121 2222211 26667665321000 00111 123467899999999999988 89
Q ss_pred CCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
|+++|||| .+++.|.++.+ .+|++|||++++..
T Consensus 231 p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~ 276 (590)
T PRK13409 231 ADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDY 276 (590)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999 44555555533 35799999999875
No 349
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.85 E-value=2.4e-22 Score=199.99 Aligned_cols=160 Identities=14% Similarity=0.182 Sum_probs=116.9
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---cc-eeeCCCCHHHHhhhCCCCCCCChhHH---HH
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KA-SSFDSQDPKEAHARRGAPWTFNPLLL---LN 167 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~---~G-i~~~g~~~~~~~~~~~~~~~~~~~~~---~t 167 (287)
.+|+|+|+++++|++++|+||||||||||+++|+|..+ +. +| +.++|.++.....+..+.+++|.+.+ +|
T Consensus 39 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~---~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP---KGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred ccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 48999999999999999999999999999999999987 64 68 89999875433333345566665432 69
Q ss_pred HHHHHhcCCceeecc-CC-----------------ccCCCCCCC------ceeccccceEEE-----ecCCEEeEec---
Q 023106 168 CLKNLRNQGSVYAPS-FD-----------------HGVGDPVED------DILVGLQHKVVI-----VDGNYLFLDG--- 215 (287)
Q Consensus 168 v~e~l~~~~~~~~~~-~~-----------------~~~~~~~~~------~LSgGekqRv~I-----~~p~lLllDE--- 215 (287)
+.||+.+......+. .. ....+..++ .|||||||||.| .+|++++|||
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 999998754432211 00 011233433 599999999988 8999999999
Q ss_pred --------chHHHHHhccCC---eEEEEcChH-HHHH---HHH----HHHhcCCCcHHHHH
Q 023106 216 --------GVWKDVSSMFDE---KWFIEVDLD-TAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 216 --------~~~~~l~~~~~~---~i~vtHd~~-~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+++.++++.+. +|+++|++. .+.. +++ |++++.|++.++..
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 556666665432 468889985 4443 554 88889999888753
No 350
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.84 E-value=2.5e-22 Score=215.90 Aligned_cols=175 Identities=16% Similarity=0.168 Sum_probs=128.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|+... ..+|+|+||+|++|+.+||+|++|||||||+++|.|++. .+| |.+||.++... ..
T Consensus 1217 ~I~f~nVs~~Y~~~~--~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~----~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAG--RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS----TEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred eEEEEEEEEEeCCCC--cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEcccCCHHHH
Confidence 599999999996421 238999999999999999999999999999999999975 478 99999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCcee------------e----ccCCccCC---CCCCCceeccccceEEE-----e
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY------------A----PSFDHGVG---DPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~------------~----~~~~~~~~---~~~~~~LSgGekqRv~I-----~ 206 (287)
+..+.+.+|++.+ -|+.+||....... . .....+.. ......||||||||++| .
T Consensus 1291 R~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr 1370 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS 1370 (1490)
T ss_pred HhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC
Confidence 3445555555543 57888886432110 0 00000111 11234699999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+|++||||| .+.+.|++.+.. +|+|+|.++.+.. |++ |++++.|++.++..
T Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1371 KAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999 455666666553 4799999999988 665 89999999999864
No 351
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.84 E-value=2.1e-22 Score=216.90 Aligned_cols=166 Identities=8% Similarity=0.149 Sum_probs=121.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
.|+++|+++.|++.. ..+|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.
T Consensus 636 ~i~~~~~~~~~~~~~--~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g~---------- 700 (1522)
T TIGR00957 636 SITVHNATFTWARDL--PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKGS---------- 700 (1522)
T ss_pred cEEEEEeEEEcCCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECCE----------
Confidence 699999999997421 128999999999999999999999999999999999999 9999 888772
Q ss_pred CCCCCChhHH--HHHHHHHhcCCceeec----------------cCCc---cCCCCCCCceeccccceEEE-----ecCC
Q 023106 156 APWTFNPLLL--LNCLKNLRNQGSVYAP----------------SFDH---GVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 156 ~~~~~~~~~~--~tv~e~l~~~~~~~~~----------------~~~~---~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
+.+++|.+.+ .|+.+|+.++...... .+.. .........|||||||||+| .+|+
T Consensus 701 i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~ 780 (1522)
T TIGR00957 701 VAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 780 (1522)
T ss_pred EEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 2333333222 4778888775421100 0000 11234577899999999998 8999
Q ss_pred EEeEec-----------chHHHHHh---ccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSS---MFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~---~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
++|||| .+++.+.. +.. .+|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 781 illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 781 IYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 999999 34444432 222 35799999998876 444 78788888887753
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=2.3e-21 Score=163.75 Aligned_cols=123 Identities=21% Similarity=0.222 Sum_probs=84.7
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHh
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLR 173 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~ 173 (287)
.+|+|+||++++|++++|+||||||||||+++|. +++| +.+++..... .+..+.+.++ ...++.+.
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il-------~~~G~v~~~~~~~~~--~~~~~~~~~q----~~~l~~~~ 75 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL-------YASGKARLISFLPKF--SRNKLIFIDQ----LQFLIDVG 75 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh-------hcCCcEEECCccccc--ccccEEEEhH----HHHHHHcC
Confidence 3899999999999999999999999999999884 3467 7776653211 1111223222 22222222
Q ss_pred cCCceeeccCCccCCCCCCCceeccccceEEE-----ec--CCEEeEec-----------chHHHHHhccC---CeEEEE
Q 023106 174 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VD--GNYLFLDG-----------GVWKDVSSMFD---EKWFIE 232 (287)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~--p~lLllDE-----------~~~~~l~~~~~---~~i~vt 232 (287)
+ .....++.+.+||+||+||++| .+ |+++|+|| .+.+.+.++.+ .+|++|
T Consensus 76 L---------~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivS 146 (176)
T cd03238 76 L---------GYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIE 146 (176)
T ss_pred C---------CccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 1 1112455788999999999998 78 99999999 34455555432 246999
Q ss_pred cChHHHH
Q 023106 233 VDLDTAM 239 (287)
Q Consensus 233 Hd~~~~~ 239 (287)
|+++++.
T Consensus 147 H~~~~~~ 153 (176)
T cd03238 147 HNLDVLS 153 (176)
T ss_pred CCHHHHH
Confidence 9999863
No 353
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.83 E-value=1.1e-22 Score=187.77 Aligned_cols=143 Identities=21% Similarity=0.322 Sum_probs=103.0
Q ss_pred EECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhCCCCCCCChhHH---HHHHHHHhcCCceee-c----
Q 023106 112 LAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARRGAPWTFNPLLL---LNCLKNLRNQGSVYA-P---- 181 (287)
Q Consensus 112 IiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~---- 181 (287)
|+||||||||||+++|+|+++ |++| +.++|.++... ...+.+.+.+|...+ +++.+|+.++..... .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~ 77 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEI 77 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHH
Confidence 689999999999999999999 9999 89999765321 123345566665432 689999987532110 0
Q ss_pred ---------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEE
Q 023106 182 ---------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFI 231 (287)
Q Consensus 182 ---------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~v 231 (287)
.+. ....++.+.+|||||||||+| .+|+++|||| .+++.|.++.. .+|++
T Consensus 78 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv 157 (325)
T TIGR01187 78 KPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157 (325)
T ss_pred HHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 000 112467899999999999998 8999999999 45555555532 25799
Q ss_pred EcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 232 EVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 232 tHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
|||++++.. |++ |+++..|+++++..
T Consensus 158 THd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 158 THDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999876 444 77777888877643
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=99.83 E-value=3.2e-22 Score=213.62 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=124.7
Q ss_pred EEEecCchhhhhhhh---------hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 77 VVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~---------~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.+..+||++...... ....+|+|||+.+++|++++|+||||||||||+++|+|... ..+.+| +.++|.+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~-~g~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCC-CCcccceEEECCcc
Confidence 488899987763211 12348999999999999999999999999999999999865 112578 8899987
Q ss_pred HHHHhhhCCCCCCCChhH---HHHHHHHHhcCCceeecc-CC-----------------ccCCCCCC-----Cceecccc
Q 023106 147 PKEAHARRGAPWTFNPLL---LLNCLKNLRNQGSVYAPS-FD-----------------HGVGDPVE-----DDILVGLQ 200 (287)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~-~~-----------------~~~~~~~~-----~~LSgGek 200 (287)
......++.+++++|... .+|+.|++.+...+..+. .+ ....+..+ ..||||||
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence 543222333455555432 278999987753222110 00 01123333 58999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHH-HHH---HHH-----HHHhcCCCc
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDT-AMQ---RVL-----KRHISTGKP 252 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~-~~~---rvi-----gr~i~~G~~ 252 (287)
|||.| .+|++|+||| .+++.|+++.+. +|+++|+++. +.. +++ |+++..|++
T Consensus 1026 kRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPL 1105 (1470)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCc
Confidence 99988 8999999999 456666665443 4699999974 333 433 467788886
Q ss_pred H---HHHHHHHHh
Q 023106 253 P---DVAKWRIEY 262 (287)
Q Consensus 253 ~---~~~~~~~~~ 262 (287)
. .-+..+++.
T Consensus 1106 ~~~~~~~~~yF~~ 1118 (1470)
T PLN03140 1106 GRNSHKIIEYFEA 1118 (1470)
T ss_pred ccccccHHHHHHh
Confidence 4 234455543
No 355
>PLN03140 ABC transporter G family member; Provisional
Probab=99.83 E-value=2.3e-21 Score=207.12 Aligned_cols=160 Identities=16% Similarity=0.247 Sum_probs=115.8
Q ss_pred cccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---cc-eeeCCCCHHHHhhhCCCCCCCChhH---HH
Q 023106 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KA-SSFDSQDPKEAHARRGAPWTFNPLL---LL 166 (287)
Q Consensus 94 ~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~---~G-i~~~g~~~~~~~~~~~~~~~~~~~~---~~ 166 (287)
..+|+|+|+.|++|++++|+|||||||||||++|+|+++ |+ +| |.++|.++.....+..+.+++|... .+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEEecccccCCCcC
Confidence 448999999999999999999999999999999999998 87 89 8999987644322333555555432 27
Q ss_pred HHHHHHhcCCceeec--------------------------------------------------cCCc----cCCCCCC
Q 023106 167 NCLKNLRNQGSVYAP--------------------------------------------------SFDH----GVGDPVE 192 (287)
Q Consensus 167 tv~e~l~~~~~~~~~--------------------------------------------------~~~~----~~~~~~~ 192 (287)
|+.|++.+....... ..+. ...+..+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 889988764321100 0000 0114456
Q ss_pred CceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccC---C-eEEEEcCh-HHHHH---HHH----H
Q 023106 193 DDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---E-KWFIEVDL-DTAMQ---RVL----K 244 (287)
Q Consensus 193 ~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~-~i~vtHd~-~~~~~---rvi----g 244 (287)
..|||||||||.| .+|+++++|| .+++.|+++.+ . +++++|+. .++.. +++ |
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 7899999999999 8999999999 56666666643 2 46888885 45544 554 8
Q ss_pred HHhcCCCcHHHH
Q 023106 245 RHISTGKPPDVA 256 (287)
Q Consensus 245 r~i~~G~~~~~~ 256 (287)
+++..|+++++.
T Consensus 415 ~ivy~G~~~~~~ 426 (1470)
T PLN03140 415 QIVYQGPRDHIL 426 (1470)
T ss_pred eEEEeCCHHHHH
Confidence 888899887765
No 356
>PLN03130 ABC transporter C family member; Provisional
Probab=99.83 E-value=1.6e-21 Score=210.58 Aligned_cols=167 Identities=14% Similarity=0.212 Sum_probs=119.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc-c-eeeCCCCHHHHhhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-A-SSFDSQDPKEAHARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~-G-i~~~g~~~~~~~~~~ 154 (287)
.|+++|+++.|+... ...+|+|+||+|++|++++|+||+|||||||+++|+|.++ |.+ | +.+.+.
T Consensus 614 ~I~~~nvsf~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l~~~--------- 680 (1622)
T PLN03130 614 AISIKNGYFSWDSKA-ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVIRGT--------- 680 (1622)
T ss_pred ceEEEeeEEEccCCC-CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEEcCe---------
Confidence 599999999997421 1238999999999999999999999999999999999999 999 8 655432
Q ss_pred CCCCCCChhHH--HHHHHHHhcCCceeec----------------cCCcc---CCCCCCCceeccccceEEE-----ecC
Q 023106 155 GAPWTFNPLLL--LNCLKNLRNQGSVYAP----------------SFDHG---VGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 155 ~~~~~~~~~~~--~tv~e~l~~~~~~~~~----------------~~~~~---~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
+.++.|.+.+ .|+.|||.++...... .+..+ .-......|||||||||+| .+|
T Consensus 681 -Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~ 759 (1622)
T PLN03130 681 -VAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1622)
T ss_pred -EEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 3444444433 5777888776432110 01111 1122355799999999999 899
Q ss_pred CEEeEec-----------chHHH-HHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 209 NYLFLDG-----------GVWKD-VSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 209 ~lLllDE-----------~~~~~-l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+++|||| ++++. +..... .+|+|||++..+.. +++ |++++.|+.+++..
T Consensus 760 ~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 760 DVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred CEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999 22222 222222 35799999988776 554 78888998888753
No 357
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.82 E-value=1.1e-20 Score=178.49 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=112.4
Q ss_pred CccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhh
Q 023106 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHAR 153 (287)
Q Consensus 74 ~~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~ 153 (287)
+.|+|.++|+++.|.+.. .++++++|-|..+..+++|||||+|||||+|++.|.+. |..|.+..+......++.
T Consensus 386 p~pvi~~~nv~F~y~~~~---~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~vs~~~H~~~~~y~ 459 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNP---MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMVSRHSHNKLPRYN 459 (614)
T ss_pred CCCeEEEeccccCCCCcc---hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---cccccccccccccchhhh
Confidence 356899999999998764 38899999999999999999999999999999999999 999943333222222333
Q ss_pred CCCCCCCChhHHHHHHHHHhcCC-----------ceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec--
Q 023106 154 RGAPWTFNPLLLLNCLKNLRNQG-----------SVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-- 215 (287)
Q Consensus 154 ~~~~~~~~~~~~~tv~e~l~~~~-----------~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-- 215 (287)
+......+.. .+.++++.-.. .+....+.......+..+||+|||.||++ ..|.+|+|||
T Consensus 460 Qh~~e~ldl~--~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPt 537 (614)
T KOG0927|consen 460 QHLAEQLDLD--KSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPT 537 (614)
T ss_pred hhhHhhcCcc--hhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCC
Confidence 3322222211 23333332211 01223445566778999999999999987 8999999999
Q ss_pred -----chHHHHHhcc---C-CeEEEEcChHHHHH
Q 023106 216 -----GVWKDVSSMF---D-EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 -----~~~~~l~~~~---~-~~i~vtHd~~~~~~ 240 (287)
+.++.+.+.+ + ++|+||||+.++.+
T Consensus 538 nhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~q 571 (614)
T KOG0927|consen 538 NHLDIETIDALAEAINEFPGGVVLVSHDFRLISQ 571 (614)
T ss_pred cCCCchhHHHHHHHHhccCCceeeeechhhHHHH
Confidence 3344444333 3 35799999999987
No 358
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.82 E-value=6.8e-21 Score=195.98 Aligned_cols=176 Identities=16% Similarity=0.197 Sum_probs=141.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--- 150 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--- 150 (287)
...+.+++++|.|+.... +++++||.|++||+.|+.|+|||||||++++|.|..+ |++| +.+.|.++...
T Consensus 562 ~~~~~~~~L~k~y~~~~~---Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 562 SSALVLNNLSKVYGGKDG---AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTDF 635 (885)
T ss_pred cceEEEcceeeeecchhh---hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccch
Confidence 357999999999988653 8999999999999999999999999999999999999 9999 88888876431
Q ss_pred -hhhCCCCCCCChhHH---HHHHHHHhcCCceeecc-CC--------------ccCCCCCCCceeccccceEEE-----e
Q 023106 151 -HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS-FD--------------HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~-~~--------------~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
.....+++.+|...+ +|..|.+.+...+..-. .+ ....++.++.+|||+|+|+.+ .
T Consensus 636 ~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig 715 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIG 715 (885)
T ss_pred hhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhc
Confidence 133446677776554 78889888876554311 11 123467799999999999866 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+|++++||| ++|..+.++.+. .|+.||.|+++.. |+. |+...-|+++++.
T Consensus 716 ~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 716 DPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 899999999 678888887763 4689999999998 655 8888889888876
No 359
>PLN03232 ABC transporter C family member; Provisional
Probab=99.82 E-value=2.5e-21 Score=208.46 Aligned_cols=167 Identities=12% Similarity=0.169 Sum_probs=118.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-ee-eCCCCHHHHhhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SS-FDSQDPKEAHARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~-~~g~~~~~~~~~~ 154 (287)
.|+++|+++.|+... ...+|+|+||+|++|+.++|+||+|||||||+++|+|.++ |++| +. +.+
T Consensus 614 ~I~~~~vsF~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~~~~---------- 679 (1495)
T PLN03232 614 AISIKNGYFSWDSKT-SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVVIRG---------- 679 (1495)
T ss_pred cEEEEeeEEEcCCCC-CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEEecC----------
Confidence 599999999997421 1238999999999999999999999999999999999999 9887 43 222
Q ss_pred CCCCCCChhHH--HHHHHHHhcCCceeec----------------cCCccC---CCCCCCceeccccceEEE-----ecC
Q 023106 155 GAPWTFNPLLL--LNCLKNLRNQGSVYAP----------------SFDHGV---GDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 155 ~~~~~~~~~~~--~tv~e~l~~~~~~~~~----------------~~~~~~---~~~~~~~LSgGekqRv~I-----~~p 208 (287)
.+.++.|.+.+ .|+.|||.++...... .+..+. -......||||||||++| .+|
T Consensus 680 ~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~ 759 (1495)
T PLN03232 680 SVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1495)
T ss_pred cEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCC
Confidence 23444454433 5778888776432100 011111 112345799999999998 899
Q ss_pred CEEeEec-----------chHHH-HHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 209 NYLFLDG-----------GVWKD-VSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 209 ~lLllDE-----------~~~~~-l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+++|||| ++++. +....+ ..|+|||++..+.. +++ |++++.|+.+++..
T Consensus 760 ~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 760 DIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred CEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999 23333 222222 35799999988766 444 78888998888753
No 360
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.81 E-value=2.2e-21 Score=208.71 Aligned_cols=149 Identities=13% Similarity=0.220 Sum_probs=107.9
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHH--HHHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLL--LNCLKNL 172 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~--~tv~e~l 172 (287)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|. +.+++|.+.+ .|+.+|+
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g~----------iayv~Q~~~l~~~Ti~eNI 507 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSGR----------ISFSPQTSWIMPGTIKDNI 507 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCE----------EEEEeCCCccCCccHHHHH
Confidence 8999999999999999999999999999999999999 9999 888872 2233333221 4788888
Q ss_pred hcCCceeecc----------------CC---ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------ch
Q 023106 173 RNQGSVYAPS----------------FD---HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GV 217 (287)
Q Consensus 173 ~~~~~~~~~~----------------~~---~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~ 217 (287)
.++....... +. ..........|||||||||+| .+|+++|||| .+
T Consensus 508 ~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i 587 (1490)
T TIGR01271 508 IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEI 587 (1490)
T ss_pred HhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 7754221000 00 001123467899999999999 8999999999 34
Q ss_pred HHH-HHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 218 WKD-VSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 218 ~~~-l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
++. +..+.. .+|++||+++.+.. +++ |++++.|+.+++..
T Consensus 588 ~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 588 FESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 443 333333 35799999998865 444 67777888877753
No 361
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.81 E-value=6.2e-21 Score=203.91 Aligned_cols=163 Identities=15% Similarity=0.180 Sum_probs=115.5
Q ss_pred cccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc-CCCcc-eeeCCCCHHHH--hhhCCCCCCCChhH---HH
Q 023106 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKA-SSFDSQDPKEA--HARRGAPWTFNPLL---LL 166 (287)
Q Consensus 94 ~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~-~p~~G-i~~~g~~~~~~--~~~~~~~~~~~~~~---~~ 166 (287)
..+|+|+|+.+++|++++|+||||||||||+|+|+|++... .|.+| |.++|.++... ..+..+.+++|... .+
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 34899999999999999999999999999999999986211 16889 99999876432 12233555555432 27
Q ss_pred HHHHHHhcCCceeec-----cC----------C--------ccCC-----CCCCCceeccccceEEE-----ecCCEEeE
Q 023106 167 NCLKNLRNQGSVYAP-----SF----------D--------HGVG-----DPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 167 tv~e~l~~~~~~~~~-----~~----------~--------~~~~-----~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
|+.|++.+...+..+ .. + .... +..+..|||||||||.| .+|++++|
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlll 233 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCW 233 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEE
Confidence 899988764322110 00 0 0011 23457799999999998 89999999
Q ss_pred ec-----------chHHHHHhccCC----eEEEEcCh-HHHHH---HHH----HHHhcCCCcHHHH
Q 023106 214 DG-----------GVWKDVSSMFDE----KWFIEVDL-DTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 214 DE-----------~~~~~l~~~~~~----~i~vtHd~-~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|| .+++.|+++.+. +|+++|+. +.+.. +++ |+++..|++.++.
T Consensus 234 DEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 234 DNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred eCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 99 566666666532 46888996 45544 554 8888899887764
No 362
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.1e-20 Score=174.17 Aligned_cols=175 Identities=20% Similarity=0.262 Sum_probs=131.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.+.+.+|++.|+... ++|+++||+++.|+.++|+|++|+||||++++|...+. +.+| |.+||+++... ..
T Consensus 262 ~v~F~~V~F~y~~~r---~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD---~~sG~I~id~qdir~vtq~sl 335 (497)
T COG5265 262 AVAFINVSFAYDPRR---PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD---VNSGSITIDGQDIRDVTQQSL 335 (497)
T ss_pred eEEEEEEEeeccccc---hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC---CcCceEEEcchhHHHhHHHHH
Confidence 488999999997654 38999999999999999999999999999999999999 9999 99999987542 33
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee--------------------c-cCCccCCCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA--------------------P-SFDHGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--------------------~-~~~~~~~~~~~~~LSgGekqRv~I---- 205 (287)
+..++.++|+..+ -+.+.|++++..... | .|+.... ...-.|||||||||+|
T Consensus 336 R~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vg-erglklSggekqrvaiar~i 414 (497)
T COG5265 336 RRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVG-ERGLKLSGGEKQRVAIARTI 414 (497)
T ss_pred HHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccc-hheeeccCchHHHHHHHHHH
Confidence 3335555555433 577788887643210 0 0111111 2334589999999998
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|.+|++|| ++...|.+.... .+++-|-+..+.. .++ |+++++|+-++++..
T Consensus 415 lk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 415 LKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred hcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc
Confidence 8999999999 344444444433 5899999998877 443 899999999998654
No 363
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.81 E-value=4.9e-22 Score=160.35 Aligned_cols=117 Identities=18% Similarity=0.255 Sum_probs=80.1
Q ss_pred ccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---HhhhCCCCCCCChhHH---HHHH
Q 023106 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHARRGAPWTFNPLLL---LNCL 169 (287)
Q Consensus 97 l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~~~~~~~~~~~~~---~tv~ 169 (287)
|+|+||+|++|++++|+|+||||||||+++|+|..+ |++| +.++|.++.. ...+..+.+.++...+ .++.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc---ccccccccccccccccccccccccccccccccccccccccc
Confidence 579999999999999999999999999999999999 9999 8899876643 2222333333333221 3333
Q ss_pred HHHhcC------CceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEecc
Q 023106 170 KNLRNQ------GSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDGG 216 (287)
Q Consensus 170 e~l~~~------~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE~ 216 (287)
++.... ..+....+.....++....||+||||||.| .+|+++||||+
T Consensus 78 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEP 135 (137)
T PF00005_consen 78 ENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEP 135 (137)
T ss_dssp HHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEEST
T ss_pred cccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 331000 000011111222234459999999999988 89999999994
No 364
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.80 E-value=1.2e-19 Score=149.99 Aligned_cols=174 Identities=19% Similarity=0.207 Sum_probs=113.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA----- 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~----- 150 (287)
++++++|...- -|-.+|.++..|+++-+|||||||||||+-.++|++ |.+| |.++|.++...
T Consensus 3 l~qln~v~~~t--------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGsi~~~G~~l~~~~~~eL 70 (248)
T COG4138 3 LMQLNDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPLEAWSATEL 70 (248)
T ss_pred eeeeccccccc--------cccccccccccceEEEEECCCCccHHHHHHHHhCCC----CCCceEEECCcchhHHhHhHH
Confidence 68888886432 356789999999999999999999999999999987 5788 99999986432
Q ss_pred -hhhCCCCCCCChhHHHHHHHHHhcCCcee----------eccCCccCCCCCCCceeccccceEEE------------ec
Q 023106 151 -HARRGAPWTFNPLLLLNCLKNLRNQGSVY----------APSFDHGVGDPVEDDILVGLQHKVVI------------VD 207 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~~tv~e~l~~~~~~~----------~~~~~~~~~~~~~~~LSgGekqRv~I------------~~ 207 (287)
+.+....+.-.....+-|+..+.+...-. ....-.+...+..++|||||-|||-+ -.
T Consensus 71 ArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~ 150 (248)
T COG4138 71 ARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPA 150 (248)
T ss_pred HHHHHHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCcc
Confidence 11111111111111234444443321110 00000122346788999999999876 23
Q ss_pred CCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HH--H--HHHhcCCCcHHHHHHHHHh
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RV--L--KRHISTGKPPDVAKWRIEY 262 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rv--i--gr~i~~G~~~~~~~~~~~~ 262 (287)
+.+||+|| .+-..+.+++.. +||.+||++...+ ++ + |+.+..|..+++....+..
T Consensus 151 ~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~vL~ 226 (248)
T COG4138 151 GQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLA 226 (248)
T ss_pred ceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcChHHHH
Confidence 58999999 223344455554 4688899999888 33 3 7888899999986655443
No 365
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=3.1e-19 Score=146.85 Aligned_cols=167 Identities=20% Similarity=0.179 Sum_probs=106.8
Q ss_pred EEEecCchhhhhhh---hhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC------
Q 023106 77 VVEARCMDEVYDAL---AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD------ 146 (287)
Q Consensus 77 ~i~~~~l~~~y~~~---~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~------ 146 (287)
.|.++||+|+|--. .-..++++++||++..|||+++-||+|+|||||||+|-|.+. |++| |.+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhhh
Confidence 58899999999311 113558999999999999999999999999999999999999 9999 6654321
Q ss_pred ---HHH--HhhhCCCCCCCChhHH---HHHHHHHhcCC-----ce-----------eeccCCccCCCCCCCceeccccce
Q 023106 147 ---PKE--AHARRGAPWTFNPLLL---LNCLKNLRNQG-----SV-----------YAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 147 ---~~~--~~~~~~~~~~~~~~~~---~tv~e~l~~~~-----~~-----------~~~~~~~~~~~~~~~~LSgGekqR 202 (287)
+.. ..++..++++.|+... ...++.++.+. .. ..-........-.|.++|||||||
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQR 160 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQR 160 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchhee
Confidence 111 1223335555544332 12222222110 00 000111223455788999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccCCe---EEEEcChHHHHHHHHHHHh
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFDEK---WFIEVDLDTAMQRVLKRHI 247 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~~~---i~vtHd~~~~~~rvigr~i 247 (287)
|.| .+-.+||||| -+.+.|.+....+ +=|-||.+.... +..|++
T Consensus 161 VNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~-vadR~~ 223 (235)
T COG4778 161 VNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREA-VADRLL 223 (235)
T ss_pred hhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHH-Hhhhee
Confidence 998 7778999999 3455555544432 455688766543 444443
No 366
>PTZ00243 ABC transporter; Provisional
Probab=99.77 E-value=2.9e-20 Score=200.40 Aligned_cols=149 Identities=13% Similarity=0.133 Sum_probs=105.8
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHH--HHHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLL--LNCLKNL 172 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~--~tv~e~l 172 (287)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.+.+ .+.+.+|.+.+ .|+.+|+
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~~~----------~i~yv~Q~~~l~~~Tv~enI 741 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWAER----------SIAYVPQQAWIMNATVRGNI 741 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECC----------eEEEEeCCCccCCCcHHHHH
Confidence 8999999999999999999999999999999999999 9999 65532 13333333221 4778888
Q ss_pred hcCCceeec----------------cC---CccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------ch
Q 023106 173 RNQGSVYAP----------------SF---DHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GV 217 (287)
Q Consensus 173 ~~~~~~~~~----------------~~---~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~ 217 (287)
.++...... .+ ...........|||||||||+| .+|+++|||| .+
T Consensus 742 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i 821 (1560)
T PTZ00243 742 LFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERV 821 (1560)
T ss_pred HcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 765321100 00 0011245688999999999999 8999999999 22
Q ss_pred HHHH-HhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 218 WKDV-SSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 218 ~~~l-~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
++.+ ..... .+|++|||++.+.. +++ |++++.|+.+++..
T Consensus 822 ~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 822 VEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 2221 11222 25799999999865 444 77778888887654
No 367
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=1.7e-19 Score=178.82 Aligned_cols=180 Identities=16% Similarity=0.216 Sum_probs=122.8
Q ss_pred EEecCchhhhhhhh-hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 78 VEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~-~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
+..++++....+.. ....+|++||..+++|++.||+||+|||||||+++|+|........+| +.++|+.......+.-
T Consensus 26 ~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~ 105 (613)
T KOG0061|consen 26 LSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKI 105 (613)
T ss_pred eEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhhe
Confidence 45555554443221 123499999999999999999999999999999999999872123578 8999965433333333
Q ss_pred CCCCCChhH---HHHHHHHHhcCCceeeccC-Cc-----------------cCCCCCC-----CceeccccceEEE----
Q 023106 156 APWTFNPLL---LLNCLKNLRNQGSVYAPSF-DH-----------------GVGDPVE-----DDILVGLQHKVVI---- 205 (287)
Q Consensus 156 ~~~~~~~~~---~~tv~e~l~~~~~~~~~~~-~~-----------------~~~~~~~-----~~LSgGekqRv~I---- 205 (287)
.+++.|+.. .+||.|.+.+...+..+.- .. ...+..+ ..+|||||+||.|
T Consensus 106 s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~El 185 (613)
T KOG0061|consen 106 SGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALEL 185 (613)
T ss_pred eEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHH
Confidence 444444433 4899999988766554431 10 1123344 4599999999998
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC--eE-EEEcChHHHHH----HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE--KW-FIEVDLDTAMQ----RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~--~i-~vtHd~~~~~~----rvi----gr~i~~G~~~~~~~ 257 (287)
.+|.+|++|| .+++.|++++.. +| +.-|.+.--.- +++ |+.+..|++.+...
T Consensus 186 l~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 186 LTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 (613)
T ss_pred HcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence 9999999999 456666666554 34 44477654333 555 88889999976643
No 368
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.77 E-value=3.5e-19 Score=163.05 Aligned_cols=160 Identities=19% Similarity=0.176 Sum_probs=108.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----Hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----AH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~~ 151 (287)
-||++||.+.|.... .-+..||++|++||+|.|+|.||||||||+++|.|+.. |++| |.+||..+.. .|
T Consensus 322 ~lelrnvrfay~~~~---FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG~I~ldg~pV~~e~ledY 395 (546)
T COG4615 322 TLELRNVRFAYQDNA---FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVSAEQLEDY 395 (546)
T ss_pred ceeeeeeeeccCccc---ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCCceeECCccCCCCCHHHH
Confidence 599999999997653 24789999999999999999999999999999999999 9999 9999986521 11
Q ss_pred hhCCCCCCCChhHH----------------HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 152 ARRGAPWTFNPLLL----------------LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 152 ~~~~~~~~~~~~~~----------------~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
+. =..-+|.++.+ ..-++.+........ ....-..-.||.|||+|+++ -+-++
T Consensus 396 R~-LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl-----~d~~fs~~kLStGQkKRlAll~AllEeR~I 469 (546)
T COG4615 396 RK-LFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSL-----NDGRFSNLKLSTGQKKRLALLLALLEERDI 469 (546)
T ss_pred HH-HHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcc-----cCCcccccccccchHHHHHHHHHHHhhCCe
Confidence 11 01111111111 111112221111110 11122455799999999987 67799
Q ss_pred EeEec---------------chHHHHHhccCCeEEEEcChHHHHH--HHH----HHHhc
Q 023106 211 LFLDG---------------GVWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHIS 248 (287)
Q Consensus 211 LllDE---------------~~~~~l~~~~~~~i~vtHd~~~~~~--rvi----gr~i~ 248 (287)
+++|| ..+..+++.-+.++.||||-.-... |++ |++++
T Consensus 470 lv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 470 LVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528 (546)
T ss_pred EEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceee
Confidence 99999 3455666666667899999765444 555 66655
No 369
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.77 E-value=4.2e-17 Score=143.36 Aligned_cols=179 Identities=37% Similarity=0.616 Sum_probs=136.2
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-----eeeCCCCHHHH-h------hhCCCCCCCChhHHHHHHHH
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-----SSFDSQDPKEA-H------ARRGAPWTFNPLLLLNCLKN 171 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-----i~~~g~~~~~~-~------~~~~~~~~~~~~~~~tv~e~ 171 (287)
-.+..++||+||||||||||++.|+++++ +.+| +.+++...... . ...+.+..++...+..++..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~---~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ---QDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAALLRR 106 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh---hccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHHHHHH
Confidence 34688999999999999999999999999 8777 23344322111 1 11234445555555677777
Q ss_pred HhcCC-ceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhcCC
Q 023106 172 LRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTG 250 (287)
Q Consensus 172 l~~~~-~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~~G 250 (287)
+..+. ....+.|+.................++.|.++.++++++..+..+...++.+|++..+.+...+|+..|....|
T Consensus 107 l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~~~~g 186 (229)
T PRK09270 107 LRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARKLAGG 186 (229)
T ss_pred HHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhcC
Confidence 77665 56667777655544333333333567888999999999888888999999999999999999889998877789
Q ss_pred CcHHHHHHHHHhcCccchhhhcccCCCCCEEEeCC
Q 023106 251 KPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 285 (287)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~ 285 (287)
...+.+..++..++.++.+++.+.+..||+||++.
T Consensus 187 ~s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~ 221 (229)
T PRK09270 187 LSPEAAEAFVLRNDGPNARLVLETSRPADLVLEMT 221 (229)
T ss_pred CCHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEec
Confidence 88888888888788999999999999999999875
No 370
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.76 E-value=1.9e-17 Score=144.71 Aligned_cols=174 Identities=22% Similarity=0.298 Sum_probs=125.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCC--Ccc-ee---eCCCCHHHH-------hhhCCCCCCCChhHHHHHHHHHhcC
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWP--QKA-SS---FDSQDPKEA-------HARRGAPWTFNPLLLLNCLKNLRNQ 175 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p--~~G-i~---~~g~~~~~~-------~~~~~~~~~~~~~~~~tv~e~l~~~ 175 (287)
++||.|+||||||||++.|++++. + .++ +. .||.-.... ....+.+..++...+...++.+..+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~---~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g 77 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS---RWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSG 77 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh---hcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCC
Confidence 589999999999999999999996 4 233 33 466532111 1124566777777778888888884
Q ss_pred -CceeeccCCccCCCCCCCceeccccceEEEecCCEEeEec-chHHHHHhccCCeEEEEcChHHHHHHHHHHHhc-----
Q 023106 176 -GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-GVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS----- 248 (287)
Q Consensus 176 -~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE-~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~----- 248 (287)
..+..|.|+....++.+....--...+|.|.||.+++.|| ..|..+.+++|..|||+.|.+.+..|++.|...
T Consensus 78 ~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~ 157 (220)
T cd02025 78 KKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETA 157 (220)
T ss_pred CCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 5677888888776655544332345689999999999885 567779999999999999999876655533221
Q ss_pred -----------CCCcHHH----HHHHHHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 249 -----------TGKPPDV----AKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 249 -----------~G~~~~~----~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
.|-+.+- +...|.+.++|+++ ||.|++..||+||+..
T Consensus 158 ~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~ 210 (220)
T cd02025 158 FSDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKG 210 (220)
T ss_pred HhCchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeC
Confidence 3433332 23346679999995 9999999999999853
No 371
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.74 E-value=6.9e-17 Score=146.15 Aligned_cols=181 Identities=20% Similarity=0.281 Sum_probs=131.7
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-ee---eCCCCHHHH-------hhhCCCCCCCChhHHHHHHHHHh
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SS---FDSQDPKEA-------HARRGAPWTFNPLLLLNCLKNLR 173 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~---~~g~~~~~~-------~~~~~~~~~~~~~~~~tv~e~l~ 173 (287)
....++||.||||||||||+++|.+++. .+|.+| +. .||...... ....+.+..++...+...+..+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~-~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS-RWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh-hcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 4578999999999999999999999986 224455 43 355432111 12345677777777788888888
Q ss_pred cCCc-eeeccCCccCCCCCCCceeccccceEEEecCCEEeEe------cchHHHHHhccCCeEEEEcChHHHHHHHHHHH
Q 023106 174 NQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD------GGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRH 246 (287)
Q Consensus 174 ~~~~-~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllD------E~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~ 246 (287)
.+.. +..|.|++...++.+...---+...|.|.+|.+++.+ +..|..+.+++|..|||+.|.+.+..|.+.|.
T Consensus 139 ~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R~ 218 (290)
T TIGR00554 139 SGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRF 218 (290)
T ss_pred CCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHHH
Confidence 8764 7789999887776665433335678999999888743 45577889999999999999999987666432
Q ss_pred h-----c-----------CCCcH-H---HHHHHHHhcCccchh-hhcccCCCCCEEEeCCC
Q 023106 247 I-----S-----------TGKPP-D---VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 247 i-----~-----------~G~~~-~---~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 286 (287)
. + .|-++ + .+...|.....|+.. +|+|++.+||+||++.+
T Consensus 219 ~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~ 279 (290)
T TIGR00554 219 LKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGA 279 (290)
T ss_pred HHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCC
Confidence 2 1 12222 2 234568889999996 99999999999998643
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.74 E-value=7.9e-19 Score=151.00 Aligned_cols=128 Identities=14% Similarity=0.108 Sum_probs=83.6
Q ss_pred cccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc----------eeeCCCCHHHHhhhCCCCCCCChhHHH-
Q 023106 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA----------SSFDSQDPKEAHARRGAPWTFNPLLLL- 166 (287)
Q Consensus 98 ~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G----------i~~~g~~~~~~~~~~~~~~~~~~~~~~- 166 (287)
+++++++.+| +++|+||||||||||+++|+|++. +..| +++.|++.........+.+.||.+...
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG---EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc---cccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce
Confidence 5788999999 999999999999999999999986 5433 334444321111111234445433221
Q ss_pred ------HHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE---------ecCCEEeEec-----------chHHH
Q 023106 167 ------NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI---------VDGNYLFLDG-----------GVWKD 220 (287)
Q Consensus 167 ------tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I---------~~p~lLllDE-----------~~~~~ 220 (287)
.+.+.+.. ....++.+..||+|||||++| .+|+++++|| .+++.
T Consensus 90 ~~~~~~~~~~~l~~----------~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~ 159 (197)
T cd03278 90 SIISQGDVSEIIEA----------PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARL 159 (197)
T ss_pred eEEehhhHHHHHhC----------CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 11111111 223456889999999999977 1458999999 45555
Q ss_pred HHhccCC--eEEEEcChHHHH
Q 023106 221 VSSMFDE--KWFIEVDLDTAM 239 (287)
Q Consensus 221 l~~~~~~--~i~vtHd~~~~~ 239 (287)
|+++.+. +|++|||++.+.
T Consensus 160 l~~~~~~~tiIiitH~~~~~~ 180 (197)
T cd03278 160 LKEFSKETQFIVITHRKGTME 180 (197)
T ss_pred HHHhccCCEEEEEECCHHHHh
Confidence 5555432 579999998763
No 373
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.74 E-value=4.7e-19 Score=184.91 Aligned_cols=169 Identities=11% Similarity=0.212 Sum_probs=128.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
...++++|.+++.+.. .....|+||||+|++|+.+||+|+-|||||+|+.+|.|.++ ..+| +.++|.
T Consensus 516 ~~~i~i~~~sfsW~~~-~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~---~~sG~v~v~gs-------- 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE-SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP---KLSGSVAVNGS-------- 583 (1381)
T ss_pred CceEEEeeeeEecCCC-CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc---cccceEEEcCe--------
Confidence 3469999999998762 23348999999999999999999999999999999999999 9999 888885
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceeeccCCc-------------------cCCCCCCCceeccccceEEE-----ec
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYAPSFDH-------------------GVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~~~~~~-------------------~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
+.++.|.+-+ -|+.|||.|+.......|+. ..--...-.|||||||||+| .+
T Consensus 584 --iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~ 661 (1381)
T KOG0054|consen 584 --VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQD 661 (1381)
T ss_pred --EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhcc
Confidence 3455554433 58888888876654333321 11123566899999999999 99
Q ss_pred CCEEeEec-----------chHHHH-HhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDV-SSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l-~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.++.|||. ++++.. ..+.+ ..|+|||.++.... .++ |++.+.|+.+++..
T Consensus 662 adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 662 ADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred CCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 99999998 333332 23333 35799999998887 444 89999999998874
No 374
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=7.5e-19 Score=162.68 Aligned_cols=159 Identities=15% Similarity=0.170 Sum_probs=102.5
Q ss_pred CccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhh
Q 023106 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHAR 153 (287)
Q Consensus 74 ~~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~ 153 (287)
.-|++-+.+|+|.|.+.. +++..++|-|.--..|+|+||||.||||||++|.|-+. |..|..-.++.+....+.
T Consensus 583 ~PPvLGlH~VtFgy~gqk---pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE~RKnhrL~iG~Fd 656 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPGQK---PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGELRKNHRLRIGWFD 656 (807)
T ss_pred CCCeeecccccccCCCCC---chhhcccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcchhhccceeeeechh
Confidence 346899999999995543 28899999999999999999999999999999999999 998833222222111111
Q ss_pred CCCCCCCChhHHHHHHHHHhcCCcee-------eccC--CccCCCCCCCceeccccceEEE-----ecCCEEeEec----
Q 023106 154 RGAPWTFNPLLLLNCLKNLRNQGSVY-------APSF--DHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG---- 215 (287)
Q Consensus 154 ~~~~~~~~~~~~~tv~e~l~~~~~~~-------~~~~--~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE---- 215 (287)
+......... .+..+.+.-...+. ...| ....+.-.+..|||||+.||++ ..|++|||||
T Consensus 657 Qh~~E~L~~E--etp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNN 734 (807)
T KOG0066|consen 657 QHANEALNGE--ETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNN 734 (807)
T ss_pred hhhHHhhccc--cCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCC
Confidence 1100000000 12222222111000 0011 1112234567899999999987 8899999999
Q ss_pred -------chHHHHHhccCCeEEEEcChHHHHH
Q 023106 216 -------GVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 -------~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
.+-+.|.++...+|+||||..++.+
T Consensus 735 LDIESIDALaEAIney~GgVi~VsHDeRLi~e 766 (807)
T KOG0066|consen 735 LDIESIDALAEAINEYNGGVIMVSHDERLIVE 766 (807)
T ss_pred cchhhHHHHHHHHHhccCcEEEEecccceeee
Confidence 2344455555567899999888766
No 375
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.73 E-value=6.7e-17 Score=138.61 Aligned_cols=182 Identities=42% Similarity=0.657 Sum_probs=156.2
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccc---C-----CCcc-eeeCCC-----------CHHHHhhhCCCCCCCChhH
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKI---W-----PQKA-SSFDSQ-----------DPKEAHARRGAPWTFNPLL 164 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~---~-----p~~G-i~~~g~-----------~~~~~~~~~~~~~~~~~~~ 164 (287)
...+++|+.|+.|+||||++..+....+.. + +-.- +-++|. +++.++.++|.++.|+...
T Consensus 117 n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~~l 196 (323)
T KOG2702|consen 117 NNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDSNL 196 (323)
T ss_pred cchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCHHH
Confidence 357899999999999999999998854421 1 1011 224664 3556678899999999988
Q ss_pred HHHHHHHHh--cCCceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHH
Q 023106 165 LLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRV 242 (287)
Q Consensus 165 ~~tv~e~l~--~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rv 242 (287)
+++...-++ ....++.|.|+++..+..+.++-..-+.|+.|.++++||||++.|+.+.++++...++.-|.+.+++|+
T Consensus 197 fl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~RV 276 (323)
T KOG2702|consen 197 FLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEERV 276 (323)
T ss_pred HHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHHHH
Confidence 888777777 456688999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC--CcHHHHHHHHHhcCccchhhhcccCCCCCEEEeCCC
Q 023106 243 LKRHISTG--KPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 286 (287)
Q Consensus 243 igr~i~~G--~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~~ 286 (287)
..|.+..| .+.+...|++..+++++.++|..+.-.+|++|+..|
T Consensus 277 a~RHl~sGl~~t~~ea~er~d~ND~~N~~~I~k~~i~~D~iv~~~n 322 (323)
T KOG2702|consen 277 AKRHLQSGLVTTIAEARERFDSNDLLNGRDIDKHLIKVDNIVHIRN 322 (323)
T ss_pred HHHhhcccccCCHHHHHhhcccccccchHHHHhcccchHHHHHhhc
Confidence 99999999 899999999999999999999999999999988654
No 376
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.72 E-value=1e-18 Score=153.37 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=28.4
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA 124 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLl 124 (287)
+|+++||+|++||++||+|+||||||||+
T Consensus 10 ~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 10 NLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred ccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 89999999999999999999999999996
No 377
>PTZ00301 uridine kinase; Provisional
Probab=99.72 E-value=2.1e-16 Score=137.06 Aligned_cols=173 Identities=24% Similarity=0.351 Sum_probs=128.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc-CCCcc--eeeCCC-----CHHH---HhhhCCCCCCCChhHHHHHHHHHhcCC
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKA--SSFDSQ-----DPKE---AHARRGAPWTFNPLLLLNCLKNLRNQG 176 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~~~-~p~~G--i~~~g~-----~~~~---~~~~~~~~~~~~~~~~~tv~e~l~~~~ 176 (287)
-+|||.|++|||||||.+.|...+... .+..- +..|+. .... ...+.+.|..++...+...+..+..+.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g~ 83 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSGK 83 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcCC
Confidence 589999999999999999887655310 02211 112332 1111 123456778888888888888888887
Q ss_pred ceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhc-CCCcHHH
Q 023106 177 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS-TGKPPDV 255 (287)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~-~G~~~~~ 255 (287)
.+..|.|+.....+....... ...+|.|.||.+++.+ ..+.++++..|||+++.++...|++.|++. +|.+.+-
T Consensus 84 ~i~~P~yd~~~~~~~~~~~~i-~p~~ViIvEGi~~l~~----~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~ 158 (210)
T PTZ00301 84 TVQIPQYDYVHHTRSDTAVTM-TPKSVLIVEGILLFTN----AELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFES 158 (210)
T ss_pred cccCCCcccccCCcCCceEEe-CCCcEEEEechhhhCC----HHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHH
Confidence 788888887665544333333 2357888899888766 467888899999999999999999988886 7998888
Q ss_pred HHHHHHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 256 AKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 256 ~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
+...|...+.|++. ||.|++..||+||+..
T Consensus 159 v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~ 189 (210)
T PTZ00301 159 VIEQYEATVRPMYYAYVEPSKVYADIIVPSW 189 (210)
T ss_pred HHHHHHHhhcccHHHHcCccccCCcEEEcCC
Confidence 87878887888887 9999999999999854
No 378
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.71 E-value=2.2e-16 Score=135.97 Aligned_cols=173 Identities=30% Similarity=0.421 Sum_probs=134.4
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eeeCCC----C-H-HH--HhhhCCCCCCCChhHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQ----D-P-KE--AHARRGAPWTFNPLLLLNCLKNLRN 174 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~~g~----~-~-~~--~~~~~~~~~~~~~~~~~tv~e~l~~ 174 (287)
.+.-+|||.|++||||||+.+.|...+. ...- +..|.. . . .. .......+..++...+.+.+.+|..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~---~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~ 82 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG---VEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQ 82 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC---cCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHc
Confidence 3567999999999999999999999987 3321 223322 1 1 11 1122346778888888899999999
Q ss_pred CCceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhc-CCCcH
Q 023106 175 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS-TGKPP 253 (287)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~-~G~~~ 253 (287)
+..+..|.|+.....+.....-. +.++|.|.+|-+++.| +.|+++++-.|||+.|.+....|.+-|++. +|..-
T Consensus 83 g~~v~~P~yd~~~~~r~~~~i~~-~p~~VVIvEGi~~l~d----~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~ 157 (218)
T COG0572 83 GKPVDLPVYDYKTHTREPETIKV-EPNDVVIVEGILLLYD----ERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDL 157 (218)
T ss_pred CCcccccccchhcccccCCcccc-CCCcEEEEeccccccc----HHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCH
Confidence 99998898887666554322211 4588999999999999 688899999999999999988888877775 88877
Q ss_pred HHHHHHHHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 254 DVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 254 ~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
+-+...|...++|+++ ||+|+++.||++|+..
T Consensus 158 e~vi~qy~~~vkp~~~~fIeptk~~ADiiip~~ 190 (218)
T COG0572 158 ESVIEQYVKTVRPMYEQFIEPTKKYADIIIPSG 190 (218)
T ss_pred HHHHHHHHHhhChhhhhccCcccccceEEeecC
Confidence 7777778889999999 9999999999999864
No 379
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.71 E-value=4e-18 Score=178.02 Aligned_cols=175 Identities=22% Similarity=0.278 Sum_probs=126.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----H
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~ 150 (287)
-|+++|++.+|.... -.||+||||+|++||.|||||..|||||||+++|-.+.. |.+| |.+||.++.. .
T Consensus 1138 ~I~f~~~~~RYrp~l--p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e---~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNL--PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE---PAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred eEEEEEeEEEeCCCC--cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC---ccCCeEEEcCeecccccHHHH
Confidence 699999999997642 239999999999999999999999999999999999999 9999 9999987633 2
Q ss_pred hhhCC-CCCCC-----------------ChhHHHHHHHHHhcCCceeeccCCccC---CCCCCCceeccccceEEE----
Q 023106 151 HARRG-APWTF-----------------NPLLLLNCLKNLRNQGSVYAPSFDHGV---GDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 151 ~~~~~-~~~~~-----------------~~~~~~tv~e~l~~~~~~~~~~~~~~~---~~~~~~~LSgGekqRv~I---- 205 (287)
+.+.+ +|+.+ .+..+..++|...+...+. ....+. -..-...+|.||||-++|
T Consensus 1213 RsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~--~~p~~Ld~~v~egG~N~SvGQRQLlCLARAL 1290 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVS--SLPGGLDSEVSEGGENFSVGQRQLLCLARAL 1290 (1381)
T ss_pred HhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHh--hCCcCCCceecCCCccCChHHHHHHHHHHHH
Confidence 32222 22221 1112233333332221111 111111 122346799999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCCe--EEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDEK--WFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~~--i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+.++|+||| -+-+.|++.+++. +.|-|.++.+.. ||+ |++++.|+|.++...
T Consensus 1291 Lr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1291 LRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSD 1363 (1381)
T ss_pred hccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhC
Confidence 8999999999 3455677777663 577899999999 777 999999999998753
No 380
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.68 E-value=1.6e-16 Score=136.11 Aligned_cols=172 Identities=34% Similarity=0.482 Sum_probs=120.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhccc-CC---Ccc-eeeCCCCHHH----Hh------hhCCCCCCCChhHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKI-WP---QKA-SSFDSQDPKE----AH------ARRGAPWTFNPLLLLNCLKNLR 173 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~-~p---~~G-i~~~g~~~~~----~~------~~~~~~~~~~~~~~~tv~e~l~ 173 (287)
+|||.||+|||||||.+.|...+... .+ ..+ +.+++..... .. .....+..++...+...+..+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 69999999999999999999999721 11 112 2334432111 11 1122455666666778888888
Q ss_pred cCCceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhc-CCCc
Q 023106 174 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS-TGKP 252 (287)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~-~G~~ 252 (287)
.+..+..|.|+............ -....|.|.+|.++++||. ++++++..||+..+.+....|.+.|++. .|..
T Consensus 81 ~g~~i~~p~yd~~~~~~~~~~~~-~~~~~ivIvEG~~~l~~~~----l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~ 155 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDPWIII-ISPSDIVIVEGIYALYDEE----LRDLFDLKIFLDADEDLRLERRIQRDVAERGRS 155 (194)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEE-EES-SEEEEEETTTTSSHC----HGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-
T ss_pred CCCcccccccccccccceeeeee-cCCCCEEEEcccceeeeee----ecccceeEEEecccHHHHHHHHhhhhccccCCc
Confidence 88888888887665543331111 1346788888888888743 8889999999999999998888888775 7998
Q ss_pred HHHHHHHHHhcCccchh-hhcccCCCCCEEEeCCC
Q 023106 253 PDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 253 ~~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 286 (287)
.+-+..+|. .+.|.+. ||+|++..||+||++.+
T Consensus 156 ~~~~~~~~~-~~~~~~~~~I~p~~~~ADivi~~~~ 189 (194)
T PF00485_consen 156 PEEVIAQYE-RVRPGYERYIEPQKERADIVIPSGP 189 (194)
T ss_dssp HHHHHHHHH-THHHHHHHCTGGGGGG-SEEEESCT
T ss_pred ceeEEEEee-cCChhhhhheeccccccEEEECCCC
Confidence 887777777 8888887 99999999999999765
No 381
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=5.9e-17 Score=152.63 Aligned_cols=154 Identities=12% Similarity=0.095 Sum_probs=98.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhh--C
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHAR--R 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~--~ 154 (287)
=|.+.+++..||++. +|.+-++++..|..+||+|+||+|||||||+|+.---..+|..- .+.|-.+...... .
T Consensus 80 Di~~~~fdLa~G~k~----LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veq-E~~g~~t~~~~~~l~~ 154 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKI----LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQ-EVRGDDTEALQSVLES 154 (582)
T ss_pred ceeeeeeeeeecchh----hhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchh-heeccchHHHhhhhhc
Confidence 377888999999987 99999999999999999999999999999999872110112211 0111111110000 0
Q ss_pred C---CCCCCChh------HHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----
Q 023106 155 G---APWTFNPL------LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG----- 215 (287)
Q Consensus 155 ~---~~~~~~~~------~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE----- 215 (287)
+ ..+..+.. .+..+..+ .+....|..++..+....||||.|.|++| .+|++|||||
T Consensus 155 D~~~~dfl~~e~~l~~~~~l~ei~~~-----~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhL 229 (582)
T KOG0062|consen 155 DTERLDFLAEEKELLAGLTLEEIYDK-----ILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHL 229 (582)
T ss_pred cHHHHHHHHhhhhhhccchHHHHHHH-----HHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccc
Confidence 0 00000000 01111111 22344677777888999999999999988 8999999999
Q ss_pred --chHHHHHhc----cCCeEEEEcChHHHHH
Q 023106 216 --GVWKDVSSM----FDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 --~~~~~l~~~----~~~~i~vtHd~~~~~~ 240 (287)
..+.-|..+ -...++||||..++..
T Consensus 230 Dv~av~WLe~yL~t~~~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 230 DVVAVAWLENYLQTWKITSLIVSHDRNFLNT 260 (582)
T ss_pred hhHHHHHHHHHHhhCCceEEEEeccHHHHHH
Confidence 222233333 3345799999999876
No 382
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.65 E-value=1.6e-15 Score=146.85 Aligned_cols=170 Identities=21% Similarity=0.305 Sum_probs=121.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhh--hCCCCCCCChhHHHHHHHHHhcCCceeecc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHA--RRGAPWTFNPLLLLNCLKNLRNQGSVYAPS 182 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~--~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~ 182 (287)
.--+|||.||||||||||++.|++++ |..| +.+||........ ....+..++...+...+..+..+..+..|.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglL----p~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~~Lr~GksV~iPi 139 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPI 139 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhC----CCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHHHHhCCCceecCc
Confidence 45799999999999999999999987 4567 7788864221111 111233333334455566677777778888
Q ss_pred CCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHH-HHHhcCCCcHHHHHHHHH
Q 023106 183 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVL-KRHISTGKPPDVAKWRIE 261 (287)
Q Consensus 183 ~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvi-gr~i~~G~~~~~~~~~~~ 261 (287)
|+.....+.....---...+|.|.+|.+++. ..+++++|..|||+.|.+....|.+ .++.+.|...+-+..++.
T Consensus 140 YDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~-----~~Lr~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~ 214 (656)
T PLN02318 140 YDFKSSSRVGYRTLEVPSSRIVIIEGIYALS-----EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQIS 214 (656)
T ss_pred cccccCcccCCceeecCCCcEEEEechhhcc-----HhHHhhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 8876554332111011246788899988875 4688899999999977776666444 555568888777778888
Q ss_pred hcCccchh-hhcccCCCCCEEEeC
Q 023106 262 YNDRPNAE-LIMKSKKNADLVIKS 284 (287)
Q Consensus 262 ~~~~~~~~-~i~~~~~~ad~ii~~ 284 (287)
..++|++. |++|.+..||+||.+
T Consensus 215 ~~VkP~y~~FIeP~kk~ADIII~n 238 (656)
T PLN02318 215 ETVYPMYKAFIEPDLQTAHIKIVN 238 (656)
T ss_pred HhhcchHHHHhCcchhcceEEEec
Confidence 89999999 999999999999965
No 383
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.64 E-value=9.1e-17 Score=152.15 Aligned_cols=177 Identities=17% Similarity=0.153 Sum_probs=111.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCH--HHH----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDP--KEA---- 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~--~~~---- 150 (287)
-+.++|+++.|.+.. +++|+.|++.+|+.+||+|+|||||||+|++|.|......+..+++...++. ...
T Consensus 75 dvk~~sls~s~~g~~----l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~ 150 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVE----LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQ 150 (614)
T ss_pred cceeeeeeeccCCce----eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHH
Confidence 489999999998877 9999999999999999999999999999999999887111122333333211 000
Q ss_pred --------------hhhCCCC---CCCChhHHHHHHHHHhcC----------CceeeccCCccCCCCCCCceeccccceE
Q 023106 151 --------------HARRGAP---WTFNPLLLLNCLKNLRNQ----------GSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 151 --------------~~~~~~~---~~~~~~~~~tv~e~l~~~----------~~~~~~~~~~~~~~~~~~~LSgGekqRv 203 (287)
+...... ..+....+.+.++.+..- ..+..-.|.....++....||||++.|+
T Consensus 151 ~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~ 230 (614)
T KOG0927|consen 151 AVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRA 230 (614)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHH
Confidence 0000000 001111112222221110 0011224445566788999999999999
Q ss_pred EE-----ecCCEEeEec----------chHHHHHhccCC--eEEEEcChHHHHH---HHH----HHHh-cCCCcHHHHH
Q 023106 204 VI-----VDGNYLFLDG----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 257 (287)
Q Consensus 204 ~I-----~~p~lLllDE----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rvi----gr~i-~~G~~~~~~~ 257 (287)
+| .+|.+||||| ..++....-++. .|+++|+.+.+-. .++ ++.+ +.|+-+....
T Consensus 231 aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 231 ALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVK 309 (614)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHHhh
Confidence 88 9999999999 123333333444 4699999999987 454 3423 4677666543
No 384
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.64 E-value=4.9e-15 Score=128.21 Aligned_cols=174 Identities=26% Similarity=0.384 Sum_probs=116.2
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-cc-eeeCCCCH--HH--HhhhCC----CCCCCChhHHHHHHHHHh
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KA-SSFDSQDP--KE--AHARRG----APWTFNPLLLLNCLKNLR 173 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~-~G-i~~~g~~~--~~--~~~~~~----~~~~~~~~~~~tv~e~l~ 173 (287)
-++|+++||+||||||||||++.|+++++ +. .+ +..++.-. .. .....+ .+..++...+...++.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~---~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 79 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG---KLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLK 79 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhc---ccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHH
Confidence 36899999999999999999999999987 52 22 33333211 01 011111 222333333456666666
Q ss_pred cCCceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhc-CCCc
Q 023106 174 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS-TGKP 252 (287)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~-~G~~ 252 (287)
.+..+..+.|+....++....... +...+.|.++.+++++ +.+.+.++..|+|+.+.+....|++.|... .|..
T Consensus 80 ~g~~v~~p~yd~~~~~~~~~~~~~-~~~~~vIieG~~~~~~----~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~ 154 (207)
T TIGR00235 80 NGSPIDVPVYDYVNHTRPKETVHI-EPKDVVILEGIMPLFD----ERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRS 154 (207)
T ss_pred CCCCEecccceeecCCCCCceEEe-CCCCEEEEEehhhhch----HhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCC
Confidence 666677777776544432221111 2345556666655554 346677888899999999998888877654 7887
Q ss_pred HHHHHHHHHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 253 PDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 253 ~~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
.+.+...|...+++++. ++.+.+..||+||++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~ 188 (207)
T TIGR00235 155 LDSVIDQYRKTVRPMYEQFVEPTKQYADLIIPEG 188 (207)
T ss_pred HHHHHHHHHHhhhhhHHHhCcccccccEEEEcCC
Confidence 77777778778889886 8899999999999853
No 385
>PRK05439 pantothenate kinase; Provisional
Probab=99.63 E-value=9.3e-15 Score=133.24 Aligned_cols=181 Identities=24% Similarity=0.330 Sum_probs=133.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH-------HhhhCCCCCCCChhHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE-------AHARRGAPWTFNPLLLLNCLKNLRN 174 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~-------~~~~~~~~~~~~~~~~~tv~e~l~~ 174 (287)
...-+|||.|++|||||||++.|..++... .+..+ +.+||.-... ...+.|.|..++...+...+..+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~ 163 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKS 163 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHc
Confidence 356799999999999999999999988521 01223 4566652111 1124567888888888899999998
Q ss_pred CCc-eeeccCCccCCCCCCCceeccccceEEEecCCEEeEecc--hHHHHHhccCCeEEEEcChHHHHHHHHHHHhc---
Q 023106 175 QGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--VWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS--- 248 (287)
Q Consensus 175 ~~~-~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~--~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~--- 248 (287)
+.. +..|.|++...+..+.+.-.-+..+|.|.+|.+++.++. -+..+.+++|..|||+-|.+.+.+|.+.|.+.
T Consensus 164 G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~lr~ 243 (311)
T PRK05439 164 GKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKLRE 243 (311)
T ss_pred CCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 876 788899887776654443333567899999988776553 47778999999999999999988766644332
Q ss_pred -------------CCCcHH----HHHHHHHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 249 -------------TGKPPD----VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 249 -------------~G~~~~----~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
.|.+.+ .+...|...+.||.+ +|+|++.+||+||++.
T Consensus 244 ~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~ 298 (311)
T PRK05439 244 TAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKG 298 (311)
T ss_pred hhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCC
Confidence 233333 345667789999995 9999999999999864
No 386
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.62 E-value=1.5e-16 Score=148.23 Aligned_cols=149 Identities=19% Similarity=0.257 Sum_probs=94.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGA 156 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~~ 156 (287)
+++-.+++|.|++.. |.--.=+|..||++|++||||-|||||+++|+|.++ |++|- ..++...+..|.+
T Consensus 342 lv~y~~~~k~~g~F~-----L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~---~~~~~vSyKPQyI 410 (591)
T COG1245 342 LVEYPDLKKTYGDFK-----LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGS---EEDLKVSYKPQYI 410 (591)
T ss_pred eeecchheeecCceE-----EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCC---CccceEeecceee
Confidence 577778888887643 333345677899999999999999999999999999 99884 2222222222222
Q ss_pred CCCCChhHHHHHHHHHhcC------Ccee-----eccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----
Q 023106 157 PWTFNPLLLLNCLKNLRNQ------GSVY-----APSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG----- 215 (287)
Q Consensus 157 ~~~~~~~~~~tv~e~l~~~------~~~~-----~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE----- 215 (287)
...++ .||.+.+... ...+ .|.--....++.+..|||||.|||+| .++++.||||
T Consensus 411 ~~~~~----gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L 486 (591)
T COG1245 411 SPDYD----GTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL 486 (591)
T ss_pred cCCCC----CcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhc
Confidence 22222 2222222211 1111 11111223467889999999999998 8999999999
Q ss_pred ------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 216 ------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.+-+.|+.... ..++|.||+-++.-
T Consensus 487 DvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dy 521 (591)
T COG1245 487 DVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDY 521 (591)
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEecceehhhh
Confidence 22233333332 24699999887754
No 387
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.61 E-value=1.6e-16 Score=142.11 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=84.8
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHH-----HHhcc--cCCCc----------c--eeeCCCCH--------H
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-----RRINK--IWPQK----------A--SSFDSQDP--------K 148 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~-----Gll~~--~~p~~----------G--i~~~g~~~--------~ 148 (287)
.|+|+|++|+.|.+++|+|++|||||||++.+. ..+.. ..|.. . +.++..++ .
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 789999999999999999999999999998663 11110 00111 1 23333211 0
Q ss_pred H-H--h---hh------CC---------CCCCCCh---hHHHHHHHHHhcCCceee----------ccCCccCCCCCCCc
Q 023106 149 E-A--H---AR------RG---------APWTFNP---LLLLNCLKNLRNQGSVYA----------PSFDHGVGDPVEDD 194 (287)
Q Consensus 149 ~-~--~---~~------~~---------~~~~~~~---~~~~tv~e~l~~~~~~~~----------~~~~~~~~~~~~~~ 194 (287)
. . . +. .| +.+.... ...+++.|++.+...+.. ........++.+.+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~~ 169 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATT 169 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCcccc
Confidence 0 0 0 00 00 0111111 111566666655332210 01111123567889
Q ss_pred eeccccceEEE-----e---cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 195 ILVGLQHKVVI-----V---DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 195 LSgGekqRv~I-----~---~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|||||+||+.| . +|+++|||| .+++.+.++.+ .+|++|||++++..
T Consensus 170 LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 99999999988 3 379999999 44555555543 25799999998754
No 388
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=3.7e-16 Score=147.27 Aligned_cols=207 Identities=12% Similarity=0.065 Sum_probs=125.5
Q ss_pred cccCCCCCcccc-chhhhhc--CcCcCcccCccch-hhhhhhhhh-----------hhh-hcCCCccEEEecCchhhhhh
Q 023106 26 RGELPSGHHGFL-SFSWIRR--NANAQPVFGKTRS-LVQNKTSLK-----------VLC-SQRREIPVVEARCMDEVYDA 89 (287)
Q Consensus 26 ~~~~~~~~~~~~-~~~~~~r--~~~~~~~~~~~r~-~~~~~~~~~-----------~~~-~~~~~~~~i~~~~l~~~y~~ 89 (287)
+++.|.....++ .+.++.+ -+++++...++|+ .+++....+ .+. -.....|.+++.+|++.|..
T Consensus 295 qrefe~q~~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p 374 (582)
T KOG0062|consen 295 QREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTP 374 (582)
T ss_pred hhhcchHHHHHHHHHHHHHHhccCcccchhHHHHHHHhccCCCCCccceecccceecCCCCCcCCCCeeEEEeeeccCCC
Confidence 344444333332 4577776 3456777777774 222211100 011 01113468999999999965
Q ss_pred hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCccee-eCCCCHHHHhhhCCCCCCCChhHHHHH
Q 023106 90 LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQDPKEAHARRGAPWTFNPLLLLNC 168 (287)
Q Consensus 90 ~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~-~~g~~~~~~~~~~~~~~~~~~~~~~tv 168 (287)
.. ...+.+++++++--..++++|+||+||||+++++.|.+. |..|+. +.+. .+..+..+.....+ ....+.
T Consensus 375 ~~--y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~---~~rgi~~~~~r-~ri~~f~Qhhvd~l--~~~v~~ 446 (582)
T KOG0062|consen 375 SE--YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT---PTRGIVGRHPR-LRIKYFAQHHVDFL--DKNVNA 446 (582)
T ss_pred cc--hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC---cccceeeeccc-ceecchhHhhhhHH--HHHhHH
Confidence 43 137899999999999999999999999999999999998 999943 3332 11111111100001 111233
Q ss_pred HHHHhc---CCc-------eeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-------c----hHHHHH
Q 023106 169 LKNLRN---QGS-------VYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-------G----VWKDVS 222 (287)
Q Consensus 169 ~e~l~~---~~~-------~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-------~----~~~~l~ 222 (287)
++.+.. +.. +.....+.......+..||||||.||++ .+|++|+||| + +.+.|.
T Consensus 447 vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~ 526 (582)
T KOG0062|consen 447 VDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALK 526 (582)
T ss_pred HHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHH
Confidence 333322 110 0111233344455578899999999988 8999999999 2 233344
Q ss_pred hccCCeEEEEcChHHHHH
Q 023106 223 SMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 223 ~~~~~~i~vtHd~~~~~~ 240 (287)
.....+|+||||.+++..
T Consensus 527 ~F~GGVv~VSHd~~fi~~ 544 (582)
T KOG0062|consen 527 NFNGGVVLVSHDEEFISS 544 (582)
T ss_pred hcCCcEEEEECcHHHHhh
Confidence 433456799999999976
No 389
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.60 E-value=2.9e-16 Score=138.86 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=36.0
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
|+++|. |+|++.. ++.+++ |++++|+||||||||||+++|.+++
T Consensus 4 i~~~nf-ksy~~~~----~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 4 VIIQGF-KSYKDQT----VIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred EEEeCc-cCcccCc----ccccCC-----CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 667764 5677655 777776 7899999999999999999999664
No 390
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.58 E-value=5.1e-14 Score=121.87 Aligned_cols=173 Identities=27% Similarity=0.395 Sum_probs=118.7
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc-c-eeeCCC-------CHHHH-hhhCCCCCCCChhHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-A-SSFDSQ-------DPKEA-HARRGAPWTFNPLLLLNCLKNLRN 174 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~-G-i~~~g~-------~~~~~-~~~~~~~~~~~~~~~~tv~e~l~~ 174 (287)
.++.+|||.|+||||||||++.|++.+. ... + +..|+. +.... ....+.+..++...+...++.+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 80 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---DESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKA 80 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---CCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHc
Confidence 4788999999999999999999999884 221 1 122221 11111 111234455566666777777776
Q ss_pred CCceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHh-cCCCcH
Q 023106 175 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHI-STGKPP 253 (287)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i-~~G~~~ 253 (287)
+..+..+.|+.....+....++. ....+.|.++.+++.+ ..+.+.++..|+|+-+.+....|++.|.. ..|...
T Consensus 81 ~~~v~~p~~d~~~~~~~~~~~~~-~~~~~vivEg~~l~~~----~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~ 155 (209)
T PRK05480 81 GKAIEIPVYDYTEHTRSKETIRV-EPKDVIILEGILLLED----ERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSL 155 (209)
T ss_pred CCccccCcccccccccCCCeEEe-CCCCEEEEEeehhcCc----hhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCH
Confidence 66666666765544443333332 2345666777666544 35667788899999999999888887765 468777
Q ss_pred HHHHHHHHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 254 DVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 254 ~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
+.+...|.....|.+. ++++.+..||+||++.
T Consensus 156 e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~ 188 (209)
T PRK05480 156 ESVINQYLSTVRPMHLQFIEPSKRYADIIIPEG 188 (209)
T ss_pred HHHHHHHHHhhhhhHHhhccHhhcceeEEecCC
Confidence 7777788888888887 8999999999999853
No 391
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.58 E-value=1.3e-15 Score=129.02 Aligned_cols=158 Identities=12% Similarity=0.014 Sum_probs=100.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------ 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------ 149 (287)
.|++.++.+.|.... +++-|+|++++.|...-++|.||||||||+|+|+|-.- ...| +.+.|.+.-.
T Consensus 13 aievsgl~f~y~~~d---P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm---v~~~~v~VlgrsaFhDt~l~~ 86 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSD---PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM---VGGGVVQVLGRSAFHDTSLES 86 (291)
T ss_pred eEEEeccEEecccCC---ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc---ccCCeEEEcCcCccccccccc
Confidence 699999999997643 38899999999999999999999999999999999654 3345 6666653211
Q ss_pred ----Hh------hhCCCCCCCChhHHHHHHHHHhcCCceeeccCC------ccCCCCCCCceeccccceEEE----ecC-
Q 023106 150 ----AH------ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFD------HGVGDPVEDDILVGLQHKVVI----VDG- 208 (287)
Q Consensus 150 ----~~------~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~------~~~~~~~~~~LSgGekqRv~I----~~p- 208 (287)
.| ...++......+.-+++.+.|.--......+.+ .....-..+.+|-|||+||.| ..|
T Consensus 87 Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~Pf 166 (291)
T KOG2355|consen 87 SGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPF 166 (291)
T ss_pred cCceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccce
Confidence 00 000110000000012333322211100000000 011234567789999999998 455
Q ss_pred CEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ 240 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~ 240 (287)
.+||||| ++++.+++.++. +++.||-.+-+..
T Consensus 167 kVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~ 213 (291)
T KOG2355|consen 167 KVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLET 213 (291)
T ss_pred eEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhh
Confidence 8999999 566666665553 4799999998887
No 392
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.57 E-value=1e-15 Score=157.48 Aligned_cols=179 Identities=14% Similarity=0.088 Sum_probs=121.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
+..-.|+.+....+.....+|+||+=-+.+|...||+|+|||||||||++|+|.... .-.+| +.++|......-.++.
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~ 865 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARV 865 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccc
Confidence 444555555442222334599999999999999999999999999999999997541 12356 8899988764433333
Q ss_pred CCCCCChh---HHHHHHHHHhcCCceeeccCCc------------------cCCCCCCC----ceeccccceEEE-----
Q 023106 156 APWTFNPL---LLLNCLKNLRNQGSVYAPSFDH------------------GVGDPVED----DILVGLQHKVVI----- 205 (287)
Q Consensus 156 ~~~~~~~~---~~~tv~e~l~~~~~~~~~~~~~------------------~~~~~~~~----~LSgGekqRv~I----- 205 (287)
.+++-|++ ...||.|-|.+.+.+..+.--. ...+..++ -||..||+|+.|
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELv 945 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELV 945 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEe
Confidence 44443332 2389999998876654332110 01233444 499999999988
Q ss_pred ecC-CEEeEec-----------chHHHHHhccCC--eEEEE-cChHHHHH----HHH-----HHHhcCCCcHHHH
Q 023106 206 VDG-NYLFLDG-----------GVWKDVSSMFDE--KWFIE-VDLDTAMQ----RVL-----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p-~lLllDE-----------~~~~~l~~~~~~--~i~vt-Hd~~~~~~----rvi-----gr~i~~G~~~~~~ 256 (287)
.+| .+|+||| .+++.++++.+. .|+.| |.+....- |++ |+.+..|+..+-.
T Consensus 946 A~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s 1020 (1391)
T KOG0065|consen 946 ANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENS 1020 (1391)
T ss_pred cCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccccc
Confidence 788 9999999 467777777775 46666 66554332 655 7888888876643
No 393
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.57 E-value=2.6e-15 Score=146.02 Aligned_cols=154 Identities=14% Similarity=0.083 Sum_probs=101.8
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeC-CCCH----HH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFD-SQDP----KE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~-g~~~----~~ 149 (287)
..|+++||+..-++.. ..|++.+|+|++|+.+-|.|+||||||||+|.|+|+-+ --+| +.+- +.++ +.
T Consensus 391 ~~i~~~nl~l~~p~~~---~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP---~g~G~I~~P~~~~~lflpQ~ 464 (604)
T COG4178 391 HGITLENLSLRTPDGQ---TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP---WGSGRISMPADSALLFLPQR 464 (604)
T ss_pred ceeEEeeeeEECCCCC---eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc---cCCCceecCCCCceEEecCC
Confidence 4799999998886643 37899999999999999999999999999999999987 5556 5544 2211 00
Q ss_pred HhhhCC-------CCC---CCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEe
Q 023106 150 AHARRG-------APW---TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLD 214 (287)
Q Consensus 150 ~~~~~~-------~~~---~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllD 214 (287)
.|...| .|. .+.+..+..++..+.++..... .+..++--..||+|||||+++ ++|++++||
T Consensus 465 PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~r----l~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LD 540 (604)
T COG4178 465 PYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAER----LDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLD 540 (604)
T ss_pred CCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHH----HhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEe
Confidence 011111 111 1344444555555544322211 122344667899999999987 999999999
Q ss_pred c-----------chHHHHHhccCCe--EEEEcChHHHH
Q 023106 215 G-----------GVWKDVSSMFDEK--WFIEVDLDTAM 239 (287)
Q Consensus 215 E-----------~~~~~l~~~~~~~--i~vtHd~~~~~ 239 (287)
| .+.+.+++.+.+. |.|.|-.....
T Consensus 541 EATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~ 578 (604)
T COG4178 541 EATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWN 578 (604)
T ss_pred cchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHH
Confidence 9 3455555544443 46667655543
No 394
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.56 E-value=2.7e-15 Score=127.63 Aligned_cols=183 Identities=17% Similarity=0.266 Sum_probs=122.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-Ccc-eeeCCCCH-----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKA-SSFDSQDP----- 147 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-~~G-i~~~g~~~----- 147 (287)
|+++.++||+..+......+.+++++|+++.+|||-|++|.+|||||-..|.|+|..+..|. +.. ..+++.++
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 56788899988886554556699999999999999999999999999999999998874321 122 44555443
Q ss_pred HHHhhhC--CCCCCCChhHH---------HHHHHHHhcC---Cc-eeeccCCc----------------cCCCCCCCcee
Q 023106 148 KEAHARR--GAPWTFNPLLL---------LNCLKNLRNQ---GS-VYAPSFDH----------------GVGDPVEDDIL 196 (287)
Q Consensus 148 ~~~~~~~--~~~~~~~~~~~---------~tv~e~l~~~---~~-~~~~~~~~----------------~~~~~~~~~LS 196 (287)
...+... .+.+.||.+.- ...++|+-.- .+ ...+.+.. +.-..++.+|-
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 2222222 25566665421 2333443221 10 01111111 11246899999
Q ss_pred ccccceEEE-----ecCCEEeEec-----------chHHHHHhccC---C-eEEEEcChHHHHHH---H--H--HHHhcC
Q 023106 197 VGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---E-KWFIEVDLDTAMQR---V--L--KRHIST 249 (287)
Q Consensus 197 gGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~-~i~vtHd~~~~~~r---v--i--gr~i~~ 249 (287)
-||-|+|.| .+|.+||.|| .++.+|..+.. . .++++||+..+.++ + + |+-++.
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 999999998 8999999999 44555544433 2 35999999999882 2 1 888888
Q ss_pred CCcHHHHH
Q 023106 250 GKPPDVAK 257 (287)
Q Consensus 250 G~~~~~~~ 257 (287)
+..++++.
T Consensus 241 a~~e~l~~ 248 (330)
T COG4170 241 APSEELVT 248 (330)
T ss_pred cchhHHhc
Confidence 88877754
No 395
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.56 E-value=7.9e-16 Score=133.80 Aligned_cols=151 Identities=13% Similarity=0.054 Sum_probs=83.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccC-CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---h
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---H 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~-~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~ 151 (287)
-|+++|+. .|.+. .+++|... +|++++|+||||||||||+++|++.+.. +..+ ...+ ...... .
T Consensus 5 ~i~l~nf~-~y~~~-------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g--~~~~~~~~~-~~~~~~~~~~ 73 (213)
T cd03279 5 KLELKNFG-PFREE-------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG--KTPRYGRQE-NLRSVFAPGE 73 (213)
T ss_pred EEEEECCc-CcCCc-------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec--Cccccccch-hHHHHhcCCC
Confidence 38899987 66543 35566654 5899999999999999999999965421 2222 2111 000000 0
Q ss_pred hhCCCCCCCChhHH---------HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----e----------c
Q 023106 152 ARRGAPWTFNPLLL---------LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----V----------D 207 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---------~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~----------~ 207 (287)
....+...|+.... ++..+..... ......+ ....++.+..||+||+||+.| . +
T Consensus 74 ~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~-~l~~g~l-~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~ 151 (213)
T cd03279 74 DTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIV-LLPQGEF-DRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGAR 151 (213)
T ss_pred ccEEEEEEEEECCeEEEEEEecCCCHHHHHHhh-hhhhcch-HHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCC
Confidence 00011122221100 0000110000 0000001 112356788999999999988 2 5
Q ss_pred CCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|+++|+|| .+.+.+.++.+ .+|++|||++++..
T Consensus 152 ~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~ 198 (213)
T cd03279 152 LEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKER 198 (213)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHh
Confidence 78999999 34445555543 24799999988754
No 396
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.55 E-value=1.1e-15 Score=132.96 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=37.1
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
|+++|.. .|++.. +++++++ +++||+||||||||||+++|.-.
T Consensus 6 l~l~nfk-~~~~~~----~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~ 48 (212)
T cd03274 6 LVLENFK-SYAGEQ----VIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV 48 (212)
T ss_pred EEEECcc-cCCCCe----eeccCCC-----CeEEEECCCCCCHHHHHHHHHHH
Confidence 7788865 887766 8898887 79999999999999999999844
No 397
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.55 E-value=4.1e-16 Score=134.81 Aligned_cols=130 Identities=15% Similarity=0.093 Sum_probs=77.3
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHH----HHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChh--------HHHHH
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVV----RRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPL--------LLLNC 168 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~----Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~--------~~~tv 168 (287)
+++.+| +++|+||||||||||+++|. |... |+.| +..+...+........+...|+.. ..+++
T Consensus 18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~---~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP---PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC---cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 455567 99999999999999999996 5444 5555 321111011100011122222221 11588
Q ss_pred HHHHhcCCceeeccCCccCCCCCCCceeccccceE------EE-----ecCCEEeEec----------c--hHHHHHhcc
Q 023106 169 LKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV------VI-----VDGNYLFLDG----------G--VWKDVSSMF 225 (287)
Q Consensus 169 ~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv------~I-----~~p~lLllDE----------~--~~~~l~~~~ 225 (287)
++++.+...-. .....++.+..||+||+||+ +| .+|+++++|| . +.+.+.++.
T Consensus 94 ~~~~~~~~~~~----~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~ 169 (204)
T cd03240 94 LENVIFCHQGE----SNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERK 169 (204)
T ss_pred hhceeeechHH----HHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHH
Confidence 88876531100 01122567889999999974 33 7999999999 2 334444444
Q ss_pred C----CeEEEEcChHHHH
Q 023106 226 D----EKWFIEVDLDTAM 239 (287)
Q Consensus 226 ~----~~i~vtHd~~~~~ 239 (287)
+ .++++||+++...
T Consensus 170 ~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 170 SQKNFQLIVITHDEELVD 187 (204)
T ss_pred hccCCEEEEEEecHHHHh
Confidence 3 2479999988764
No 398
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1.2e-15 Score=145.62 Aligned_cols=163 Identities=20% Similarity=0.264 Sum_probs=120.7
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
-+++++++++..- .++|+||++.+|||+||.|--|||+|-|++.|.|..+ +.+| +.++|+.+..
T Consensus 261 ~~~l~v~~l~~~~--------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~i~l~G~~v~~~sp~ 329 (500)
T COG1129 261 EPVLEVRNLSGGG--------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSPR 329 (500)
T ss_pred CcEEEEecCCCCC--------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCceEEECCEEccCCCHH
Confidence 4578999987432 4689999999999999999999999999999999887 8889 9999985422
Q ss_pred HhhhCCCCCCCChhH------HHHHHHHHhcCCcee-e-c-cCCc------------------cCCCCCCCceeccccce
Q 023106 150 AHARRGAPWTFNPLL------LLNCLKNLRNQGSVY-A-P-SFDH------------------GVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~------~~tv~e~l~~~~~~~-~-~-~~~~------------------~~~~~~~~~LSgGekqR 202 (287)
...+.|+.++..+-. .+++.+|+.+..... . . ..+. ...+..+..||||-|||
T Consensus 330 ~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQK 409 (500)
T COG1129 330 DAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQK 409 (500)
T ss_pred HHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhh
Confidence 123345554443221 167778876651101 0 0 1111 01246788999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhc
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~ 248 (287)
|.| .+|++||||| +++..|+++.+. ++++|-+++++.. |++ ||++.
T Consensus 410 VvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 410 VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 999 8999999999 788888888876 3699999999987 665 66654
No 399
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.53 E-value=2.8e-13 Score=116.20 Aligned_cols=167 Identities=28% Similarity=0.427 Sum_probs=107.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCc-c-eeeCCCC----HHHHh----hhCCCCCCCChhHHHHHHHHHhcCCce
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQK-A-SSFDSQD----PKEAH----ARRGAPWTFNPLLLLNCLKNLRNQGSV 178 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~-G-i~~~g~~----~~~~~----~~~~~~~~~~~~~~~tv~e~l~~~~~~ 178 (287)
++||+||||||||||+++|.+++. ... . +..|+.. ..... ...+.+..++...+.+.+..+..+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~---~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 77 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG---NPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSV 77 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---CCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCE
Confidence 589999999999999999999874 211 1 1222211 00000 112233444444445666666666555
Q ss_pred eeccCCccCCCCCCCceeccccceEEEecCCEEeEecchH---HHHHhccCCeEEEEcChHHHHHHHHHHHh-cCCCcHH
Q 023106 179 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW---KDVSSMFDEKWFIEVDLDTAMQRVLKRHI-STGKPPD 254 (287)
Q Consensus 179 ~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~---~~l~~~~~~~i~vtHd~~~~~~rvigr~i-~~G~~~~ 254 (287)
..+.|+.....+... .+.+.++.++|+|.... ..+.+.++..|+|..+.+....|++.|.. .+|...+
T Consensus 78 ~~p~~d~~~~~~~~~--------~~~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~ 149 (198)
T cd02023 78 EIPVYDFKTHSRLKE--------TVTVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLE 149 (198)
T ss_pred eccccccccCcccCC--------ceecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHH
Confidence 555554433222111 12345677777776211 34566778889999999988888887765 5787776
Q ss_pred HHHHHHHhcCccchh-hhcccCCCCCEEEeCCC
Q 023106 255 VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 255 ~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 286 (287)
.....|.....+++. ++.+.+..||+||++.+
T Consensus 150 ~~~~~~~~~~~~~~~~~i~~~~~~aD~ii~~~~ 182 (198)
T cd02023 150 SVINQYLKFVKPMHEQFIEPTKRYADVIIPRGG 182 (198)
T ss_pred HHHHHHHHhhhhhHHHhCccchhceeEEECCCC
Confidence 666778788888887 88899999999998653
No 400
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.50 E-value=1.9e-14 Score=137.46 Aligned_cols=160 Identities=16% Similarity=0.095 Sum_probs=105.9
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-ee--eCC--CCH---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SS--FDS--QDP--- 147 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~--~~g--~~~--- 147 (287)
++|++++|+..-+.. +..+++|+||+|+.|+-+-|.||||||||.|+|+|+|+-+ ..+| +. .+| .++
T Consensus 432 n~i~~e~v~l~tPt~--g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp---~~~G~l~k~~~~~~~~lffl 506 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTN--GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP---STGGKLTKPTDGGPKDLFFL 506 (659)
T ss_pred ceEEeeeeeecCCCC--CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc---cCCCeEEecccCCCCceEEe
Confidence 489999999877552 2347789999999999999999999999999999999987 5677 43 344 211
Q ss_pred HH-Hh-----hhCCC--C--------CCCChhHHHHHHHHHhcCCceee-ccCCccCCCCCCCceeccccceEEE-----
Q 023106 148 KE-AH-----ARRGA--P--------WTFNPLLLLNCLKNLRNQGSVYA-PSFDHGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 148 ~~-~~-----~~~~~--~--------~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~LSgGekqRv~I----- 205 (287)
+. -+ .++.+ | ...++..++..+|++.++--+.. ..++........+.||+||+||+++
T Consensus 507 PQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy 586 (659)
T KOG0060|consen 507 PQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFY 586 (659)
T ss_pred cCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHh
Confidence 00 00 01111 1 11233345777788777543331 2333333334678899999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
++|.+.+||| .+.+.++++--..|-|+|-..+...
T Consensus 587 ~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 587 HKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKF 632 (659)
T ss_pred cCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhh
Confidence 9999999999 2333333333334566787666554
No 401
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.49 E-value=7.5e-13 Score=119.32 Aligned_cols=166 Identities=22% Similarity=0.353 Sum_probs=110.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCccee--eCCCCH--HHHhhhCCCCCC----CChhHHHHHHHHHhcCCceee
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS--FDSQDP--KEAHARRGAPWT----FNPLLLLNCLKNLRNQGSVYA 180 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~--~~g~~~--~~~~~~~~~~~~----~~~~~~~tv~e~l~~~~~~~~ 180 (287)
++||+|+||||||||++.|++++. +..+.. .++... ...+...+.... .+...+...++.+..+..+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~---~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~ 77 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG---SDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEK 77 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC---CCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCccc
Confidence 589999999999999999999998 776633 332211 111122232111 112223556666776666666
Q ss_pred ccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhc-CCCcHHHHHHH
Q 023106 181 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS-TGKPPDVAKWR 259 (287)
Q Consensus 181 ~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~-~G~~~~~~~~~ 259 (287)
|.|+........... -...++.|.++.+++.+ ..+.++++..|+|+.+.+....|.+.|.+. .|...+-+...
T Consensus 78 P~y~~~~~~~~~~~~--i~~~~ivIvEG~~~l~~----~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~ 151 (273)
T cd02026 78 PIYNHVTGLIDPPEL--IKPTKIVVIEGLHPLYD----ERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLAS 151 (273)
T ss_pred ccccccCCCcCCcEE--cCCCCEEEEeeehhhCc----hhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 666654432111110 01246777888777766 467778899999999999988888888876 68777766666
Q ss_pred HHhcCccchh-hhcccCCCCCEEEeC
Q 023106 260 IEYNDRPNAE-LIMKSKKNADLVIKS 284 (287)
Q Consensus 260 ~~~~~~~~~~-~i~~~~~~ad~ii~~ 284 (287)
+.. ..+.+. |+.|.+..||+||..
T Consensus 152 i~~-r~~~~~~~I~P~~~~ADvVI~~ 176 (273)
T cd02026 152 IEA-RKPDFEAYIDPQKQYADVVIQV 176 (273)
T ss_pred HHh-hchhHHHHhccccccCcEEEEc
Confidence 664 466666 999999999999963
No 402
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.48 E-value=4.4e-14 Score=121.61 Aligned_cols=130 Identities=12% Similarity=0.074 Sum_probs=77.7
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCC-----CCCCCCh------hH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRG-----APWTFNP------LL 164 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~-----~~~~~~~------~~ 164 (287)
.++++++++.+| +.+|+||||||||||+..|...+. ........|........ .+ +...|+. ..
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~-~~~~~~~i~~~~~~~~~~~~~~ 85 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIK-DGESSAKITVTLKNQGLDANPL 85 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhh-CCCCeEEEEEEEEcCCccCCcC
Confidence 446677788887 779999999999999999976554 32221222322111100 00 0001110 00
Q ss_pred --H--HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE---------ecCCEEeEec-----------chHHH
Q 023106 165 --L--LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI---------VDGNYLFLDG-----------GVWKD 220 (287)
Q Consensus 165 --~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I---------~~p~lLllDE-----------~~~~~ 220 (287)
. ..+.+.+.. ....++.+..||+|||||+.| .+|+++|||| .+++.
T Consensus 86 ~~~~~~~~~~~l~~----------~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~ 155 (198)
T cd03276 86 CVLSQDMARSFLTS----------NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDL 155 (198)
T ss_pred CHHHHHHHHHHhcc----------ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHH
Confidence 0 111122211 223456889999999999876 4999999999 35555
Q ss_pred HHhccC------CeEEEEcChHHHHH
Q 023106 221 VSSMFD------EKWFIEVDLDTAMQ 240 (287)
Q Consensus 221 l~~~~~------~~i~vtHd~~~~~~ 240 (287)
|.++.. .++++||+++.+..
T Consensus 156 l~~~~~~~~~~~~iii~th~~~~i~~ 181 (198)
T cd03276 156 LVKEAKKQPGRQFIFITPQDISGLAS 181 (198)
T ss_pred HHHHHhcCCCcEEEEEECCccccccc
Confidence 655532 13577799999876
No 403
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.47 E-value=2.4e-14 Score=127.51 Aligned_cols=51 Identities=10% Similarity=0.099 Sum_probs=38.9
Q ss_pred CCCCCceeccccceEEE---------ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHH
Q 023106 189 DPVEDDILVGLQHKVVI---------VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAM 239 (287)
Q Consensus 189 ~~~~~~LSgGekqRv~I---------~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~ 239 (287)
+..+.+||+||+||++| .+|+++|+|| .+++.|.++... .|++||+.+...
T Consensus 161 ~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~ 233 (251)
T cd03273 161 KESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFN 233 (251)
T ss_pred cccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 46788999999999988 1569999999 455666665443 479999965554
No 404
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.47 E-value=8.3e-14 Score=131.26 Aligned_cols=175 Identities=20% Similarity=0.236 Sum_probs=127.7
Q ss_pred CccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH-----
Q 023106 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP----- 147 (287)
Q Consensus 74 ~~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~----- 147 (287)
+-+++++++|+..=... ...+++|||+|..|||+||.|-.|-|-+.|+.+|+|+.+ +.+| |.++|.++
T Consensus 254 g~~vL~V~~L~v~~~~~---~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~---~~~G~I~l~G~~v~~~~~ 327 (501)
T COG3845 254 GEVVLEVEDLSVKDRRG---VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVLGRLS 327 (501)
T ss_pred CCeEEEEeeeEeecCCC---CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc---cCCceEEECCEeccccCC
Confidence 34589999998765332 237999999999999999999999999999999999998 8889 99999885
Q ss_pred HHHhhhCCCCCCCChhH------HHHHHHHHhcCCceeec----c-----------------CCc--cCCCCCCCceecc
Q 023106 148 KEAHARRGAPWTFNPLL------LLNCLKNLRNQGSVYAP----S-----------------FDH--GVGDPVEDDILVG 198 (287)
Q Consensus 148 ~~~~~~~~~~~~~~~~~------~~tv~e~l~~~~~~~~~----~-----------------~~~--~~~~~~~~~LSgG 198 (287)
...++..|+.+.+.+-. -+++.+|+.+......+ . |+- ......+..||||
T Consensus 328 ~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGG 407 (501)
T COG3845 328 PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGG 407 (501)
T ss_pred HHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCc
Confidence 22344566666665431 17888998775432111 0 110 1123467889999
Q ss_pred ccceEEE-----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCc
Q 023106 199 LQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 199 ekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~ 252 (287)
.+||+.+ .+|++|++.+ .+.+.|.+..+. +++||-|++++.. |+. |+++...++
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~ 487 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPP 487 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccc
Confidence 9999999 8999999998 344555555554 4699999999998 444 676655555
Q ss_pred HH
Q 023106 253 PD 254 (287)
Q Consensus 253 ~~ 254 (287)
++
T Consensus 488 ~~ 489 (501)
T COG3845 488 EE 489 (501)
T ss_pred cc
Confidence 44
No 405
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.46 E-value=4.1e-13 Score=118.71 Aligned_cols=177 Identities=27% Similarity=0.407 Sum_probs=146.1
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc--c--eeeCCCC-----H--HHHhhhCCCCCCCChhHHHHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--A--SSFDSQD-----P--KEAHARRGAPWTFNPLLLLNCLKN 171 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~--G--i~~~g~~-----~--~~~~~~~~~~~~~~~~~~~tv~e~ 171 (287)
.-+..-||||.|+.|+||||+.+.+.-++.. +|.+ - +..||.. + .....+.|.|..||...+...+..
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~-~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~ 156 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSR-WPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSD 156 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHhh-CCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHH
Confidence 4556889999999999999999999999863 2222 1 3455542 2 223557889999999999888888
Q ss_pred HhcCCc-eeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhcCC
Q 023106 172 LRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTG 250 (287)
Q Consensus 172 l~~~~~-~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~~G 250 (287)
++.+.. +..|.|++...+..+++.-...+.|+.|.+|+.+|+|++-|..+.+.+|..|+|+-|.+.+.+|.+.|....|
T Consensus 157 vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl~~g 236 (283)
T COG1072 157 VKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKFG 236 (283)
T ss_pred HhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHHhcc
Confidence 887655 7789999999999999998899999999999999999988889999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhcCccchhhhcccCCCCCE
Q 023106 251 KPPDVAKWRIEYNDRPNAELIMKSKKNADL 280 (287)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~ 280 (287)
.........+..++.++.+........++.
T Consensus 237 ~~a~~~~~~~~~~~~~~~~~~a~~~a~~~w 266 (283)
T COG1072 237 LTAFEDPASYFHNYAPLSEREAIESARAIW 266 (283)
T ss_pred cchhhChhhHhhccCcchHHHHHHhhhhcc
Confidence 998888888888888888755555444443
No 406
>PLN02348 phosphoribulokinase
Probab=99.45 E-value=1.9e-12 Score=120.69 Aligned_cols=172 Identities=22% Similarity=0.348 Sum_probs=121.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccC--------------CCcc--eeeCCCCHH--HHhhhCCC----CCCCChh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIW--------------PQKA--SSFDSQDPK--EAHARRGA----PWTFNPL 163 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~--------------p~~G--i~~~g~~~~--~~~~~~~~----~~~~~~~ 163 (287)
+.-+|||.|++|||||||++.|...+.... ++.. +.+|+.-.. ..+...+. +..++..
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a~dfD 127 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFD 127 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCcccccHH
Confidence 456999999999999999999999985210 0111 334554221 11111221 2233444
Q ss_pred HHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHH
Q 023106 164 LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVL 243 (287)
Q Consensus 164 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvi 243 (287)
.+.+.+..|..+..+..|.|++......+... . +..+|.|.++.+++.|| .++++++..|+|+.+.+....|.+
T Consensus 128 ll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~-I-~p~~VVIVEGlh~L~~e----~lr~l~D~~IyVd~~~dvrl~RRI 201 (395)
T PLN02348 128 LMYEQVKALKEGKAVEKPIYNHVTGLLDPPEL-I-EPPKILVIEGLHPMYDE----RVRDLLDFSIYLDISDDVKFAWKI 201 (395)
T ss_pred HHHHHHHHHHCCCcEEeeccccCCCCcCCcEE-c-CCCcEEEEechhhccCc----cccccCcEEEEEECCHHHHHHHHH
Confidence 45777888888888888888876554323222 1 34788889998888884 567788889999999999988888
Q ss_pred HHHhc-CCCcHHHHHHHHHhcCccchh-hhcccCCCCCEEEeC
Q 023106 244 KRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 284 (287)
Q Consensus 244 gr~i~-~G~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~ 284 (287)
.|+++ +|...+.+...+... .|.+. ||.|.+..||+||+-
T Consensus 202 ~RD~~eRG~S~EeV~~~i~ar-~pd~~~yI~pqk~~ADiVI~v 243 (395)
T PLN02348 202 QRDMAERGHSLESIKASIEAR-KPDFDAYIDPQKQYADVVIEV 243 (395)
T ss_pred HhhHhhcCCCHHHHHHHHHhc-CcchhhhcccccccCCEEEEe
Confidence 88886 798777777777654 55555 999999999999973
No 407
>PRK07429 phosphoribulokinase; Provisional
Probab=99.42 E-value=5.1e-12 Score=116.50 Aligned_cols=170 Identities=22% Similarity=0.357 Sum_probs=114.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eeeCCCCH--HHHhhhCCC----CCCCChhHHHHHHHHHhcCCc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQDP--KEAHARRGA----PWTFNPLLLLNCLKNLRNQGS 177 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~~g~~~--~~~~~~~~~----~~~~~~~~~~tv~e~l~~~~~ 177 (287)
+.-++||.|+||||||||++.|++++. +..+ +..|+... ...+...+. +...+...+...++.+..+..
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~---~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~ 83 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLG---EELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQP 83 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhc---cCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCc
Confidence 456999999999999999999999998 7765 34555321 111112222 111222234556666776666
Q ss_pred eeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhc-CCCcHHHH
Q 023106 178 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS-TGKPPDVA 256 (287)
Q Consensus 178 ~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~-~G~~~~~~ 256 (287)
+..+.++.......+. .+. +..++.|.++.+.+.+ +.+++++|..|+|+-+.+....|.+.|.+. .|...+.+
T Consensus 84 I~~P~yd~~~g~~~~~-~~i-~p~~iVIvEG~~~l~~----~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei 157 (327)
T PRK07429 84 ILKPIYNHETGTFDPP-EYI-EPNKIVVVEGLHPLYD----ERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQV 157 (327)
T ss_pred eecceeecCCCCcCCc-Eec-CCCcEEEEechhhcCc----HhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHH
Confidence 6666666543322111 111 2356777888776666 467788899999999999998888888876 68777766
Q ss_pred HHHHHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 257 KWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 257 ~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
..++... .+.+. ||.|.+..||+||+..
T Consensus 158 ~~~i~~r-~pd~~~yI~P~k~~ADiVI~~~ 186 (327)
T PRK07429 158 LAEIEAR-EPDFEAYIRPQRQWADVVIQFL 186 (327)
T ss_pred HHHHHHh-CccHhhhhcccccCCCEEEEcC
Confidence 6667654 55555 9999999999999853
No 408
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.42 E-value=9.5e-14 Score=142.87 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=53.0
Q ss_pred CCCCCCceeccccceEEE-----ecC---CEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH--HHH
Q 023106 188 GDPVEDDILVGLQHKVVI-----VDG---NYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL 243 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I-----~~p---~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~--rvi 243 (287)
.++.+.+|||||+||+.| .+| .++|||| .+++.|.++.+ .+|++|||++.+.. +++
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii 903 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWII 903 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE
Confidence 356788999999999988 667 8999999 44555655543 35799999999865 333
Q ss_pred ----------HHHhcCCCcHHHHH
Q 023106 244 ----------KRHISTGKPPDVAK 257 (287)
Q Consensus 244 ----------gr~i~~G~~~~~~~ 257 (287)
|++++.|+++++..
T Consensus 904 ~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 904 DLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred EecCCcCCCCCEEEEeCCHHHHHh
Confidence 46778898888754
No 409
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.37 E-value=1.9e-13 Score=117.65 Aligned_cols=116 Identities=10% Similarity=0.057 Sum_probs=69.7
Q ss_pred ccccccccCCCe-EEEEECCCCCCHHHHHHHHH-HHhcccCCCcceeeCC-CCHHHHhhhCCCCCCCChhHHHHHHHHHh
Q 023106 97 TSALASNVNVKH-IVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDS-QDPKEAHARRGAPWTFNPLLLLNCLKNLR 173 (287)
Q Consensus 97 l~~vsl~i~~Ge-ivgIiGpNGsGKSTLlk~L~-Gll~~~~p~~Gi~~~g-~~~~~~~~~~~~~~~~~~~~~~tv~e~l~ 173 (287)
+-++||++.+|+ +++|+||||||||||+++|+ +.+. +..|..+.. ... .+++..+..
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~---~~~G~~vp~~~~~-------~~~~~~~~~---------- 76 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM---AQSGLPIPAAEGS-------SLPVFENIF---------- 76 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH---HHcCCCccccccc-------cCcCccEEE----------
Confidence 457899999995 79999999999999999998 3333 344421110 000 011111100
Q ss_pred cCCceeeccCCccCCCCCCCceeccccceEEE----ecCCEEeEec-----------chHH-HHHhccC---CeEEEEcC
Q 023106 174 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI----VDGNYLFLDG-----------GVWK-DVSSMFD---EKWFIEVD 234 (287)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I----~~p~lLllDE-----------~~~~-~l~~~~~---~~i~vtHd 234 (287)
.. .............+|+||+|++.| .+|+++++|| .++. .++.+.+ ..+++||+
T Consensus 77 -----~~-lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~ 150 (200)
T cd03280 77 -----AD-IGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY 150 (200)
T ss_pred -----Ee-cCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH
Confidence 00 000111233567899999999877 6899999999 2222 3344332 25799998
Q ss_pred hHHH
Q 023106 235 LDTA 238 (287)
Q Consensus 235 ~~~~ 238 (287)
.+..
T Consensus 151 ~~l~ 154 (200)
T cd03280 151 GELK 154 (200)
T ss_pred HHHH
Confidence 6543
No 410
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.37 E-value=1.2e-13 Score=148.16 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=52.2
Q ss_pred CCCCCCceeccccceEEE----e----cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH--HHH
Q 023106 188 GDPVEDDILVGLQHKVVI----V----DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL 243 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I----~----~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~--rvi 243 (287)
.++.+.+|||||+|||.| . +|+++|||| .+++.|.++.+ .+|++||+++.+.. +++
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi 882 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVL 882 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 356789999999999988 2 899999999 44555555543 24799999999833 332
Q ss_pred ----------HHHhcCCCcHHHHH
Q 023106 244 ----------KRHISTGKPPDVAK 257 (287)
Q Consensus 244 ----------gr~i~~G~~~~~~~ 257 (287)
|++++.|+++++..
T Consensus 883 ~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 883 ELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEccCCCCCCCEEEEeCCHHHHHh
Confidence 46678899888753
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.36 E-value=2e-13 Score=140.27 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=36.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHH
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAE 126 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~ 126 (287)
+|+++|++. . .|+++||+|+.|++++|+|+||||||||++-
T Consensus 612 ~l~l~~~~~-----~----~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~ 652 (924)
T TIGR00630 612 FLTLKGARE-----N----NLKNITVSIPLGLFTCITGVSGSGKSTLIND 652 (924)
T ss_pred eEEEEeCcc-----C----CcCceEEEEeCCCEEEEECCCCCCHHHHHHH
Confidence 689999862 2 6899999999999999999999999999983
No 412
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1e-12 Score=122.37 Aligned_cols=159 Identities=17% Similarity=0.144 Sum_probs=105.5
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCH--------HH
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDP--------KE 149 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~--------~~ 149 (287)
|.++|.+.+-.++. ++.+.||.|-.|..+||+||||-||||||+.|+..--...|.-.+.+..+.+ ..
T Consensus 265 IKiEnF~ISA~Gk~----LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 265 IKIENFDISAQGKL----LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred ceeeeeeeecccce----eeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence 77888887776655 8899999999999999999999999999999987532221333344444421 00
Q ss_pred ---H-----------hhhCC---CCCCCChhHHHHHHHHHhcCCc----------eeeccCCccCCCCCCCceeccccce
Q 023106 150 ---A-----------HARRG---APWTFNPLLLLNCLKNLRNQGS----------VYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 ---~-----------~~~~~---~~~~~~~~~~~tv~e~l~~~~~----------~~~~~~~~~~~~~~~~~LSgGekqR 202 (287)
. ....+ .+...-...+..+++.+..... +..-.|+..+.+++...+|||.+.|
T Consensus 341 vl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMR 420 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMR 420 (807)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeee
Confidence 0 00011 1111112233455555543211 2234677788899999999999999
Q ss_pred EEE-----ecCCEEeEecc-----------hHHHHHhccCCeEEEEcChHHHHH
Q 023106 203 VVI-----VDGNYLFLDGG-----------VWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 v~I-----~~p~lLllDE~-----------~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
|.| .+|-+|.|||+ +-..|.-..+..++||||..++..
T Consensus 421 vSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~ 474 (807)
T KOG0066|consen 421 VSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDS 474 (807)
T ss_pred hhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHH
Confidence 998 89999999991 223344444456799999988765
No 413
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.33 E-value=8.8e-13 Score=122.06 Aligned_cols=142 Identities=16% Similarity=0.186 Sum_probs=89.0
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc-----cCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHHHHH
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-----IWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLLLNC 168 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~-----~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~~tv 168 (287)
.+++|+||++++|++++|+|+||||||||+++|+|.... .-|++| +.+--..+.... .......|. -.++
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~i-Pge~Ep~f~---~~ti 472 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALI-PGEYEPEFG---EVTI 472 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhcc-CcccccccC---chhH
Confidence 379999999999999999999999999999999998653 137888 443222221110 000111111 1344
Q ss_pred HHHHhcC-Cce-------e-eccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHh
Q 023106 169 LKNLRNQ-GSV-------Y-APSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSS 223 (287)
Q Consensus 169 ~e~l~~~-~~~-------~-~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~ 223 (287)
++.+... ..+ . ...-+.-...+...+||-|||-|+-| ..|++++.|| .+...+.+
T Consensus 473 lehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkise 552 (593)
T COG2401 473 LEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISE 552 (593)
T ss_pred HHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHH
Confidence 4444321 010 0 01111223356788999999999987 7789999999 33344444
Q ss_pred ccC----CeEEEEcChHHHHH
Q 023106 224 MFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 224 ~~~----~~i~vtHd~~~~~~ 240 (287)
+.. ..+++||..+....
T Consensus 553 laRe~giTlivvThrpEv~~A 573 (593)
T COG2401 553 LAREAGITLIVVTHRPEVGNA 573 (593)
T ss_pred HHHHhCCeEEEEecCHHHHhc
Confidence 432 24699999888754
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.33 E-value=7e-13 Score=114.62 Aligned_cols=120 Identities=12% Similarity=0.043 Sum_probs=75.8
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHhcC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ 175 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~ 175 (287)
+.+|++|++..|++++|+||||+|||||+++|+++.- ...-|..+ +-...-+++++++...
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~--la~~G~~v-----------------pa~~~~l~~~d~I~~~ 78 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI--MAQIGCFV-----------------PAEYATLPIFNRLLSR 78 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH--HHHcCCCc-----------------chhhcCccChhheeEe
Confidence 7899999999999999999999999999999988753 00111110 1011112333443211
Q ss_pred CceeeccCCccCCCCCCCceeccccceEEE----ecCCEEeEecc------------hHHHHHhccC---CeEEEEcChH
Q 023106 176 GSVYAPSFDHGVGDPVEDDILVGLQHKVVI----VDGNYLFLDGG------------VWKDVSSMFD---EKWFIEVDLD 236 (287)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~LSgGekqRv~I----~~p~lLllDE~------------~~~~l~~~~~---~~i~vtHd~~ 236 (287)
. -..+...+....+|.|+++...+ .+|.++|+||. .+..++.+.+ .++++||+.+
T Consensus 79 ~------~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 79 L------SNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred c------CCccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 1 01112234567788988876544 68999999991 1223333332 3579999999
Q ss_pred HHHH
Q 023106 237 TAMQ 240 (287)
Q Consensus 237 ~~~~ 240 (287)
++..
T Consensus 153 l~~~ 156 (204)
T cd03282 153 IAAI 156 (204)
T ss_pred HHHH
Confidence 8864
No 415
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.33 E-value=3.6e-11 Score=106.99 Aligned_cols=170 Identities=12% Similarity=0.066 Sum_probs=113.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCc--ceeeCCCC--------HHHH--h-----hhCCC--CCCCChhHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQK--ASSFDSQD--------PKEA--H-----ARRGA--PWTFNPLLLLNCL 169 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~--Gi~~~g~~--------~~~~--~-----~~~~~--~~~~~~~~~~tv~ 169 (287)
++||.|++||||||+.+.|...+. ... -.++.+-+ .... . .+... |..++...+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~---~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA---REGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH---hcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 589999999999999999998875 221 12233321 1100 0 11223 5566666667788
Q ss_pred HHHhcCCceeeccCCccC-----CCCCCCcee----ccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHH
Q 023106 170 KNLRNQGSVYAPSFDHGV-----GDPVEDDIL----VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 170 e~l~~~~~~~~~~~~~~~-----~~~~~~~LS----gGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
..+..+.....+.|+... ..+.+++.. .-+...|.|.+|-+.++. .-...+++++|..|+|..+.++...
T Consensus 78 ~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p~dvIivEGLhg~~~-~~~~~lr~~~DlkIfVd~~~dlr~i 156 (277)
T cd02029 78 RTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVV-TEGYNVAQHADLLVGVVPIINLEWI 156 (277)
T ss_pred HHHHcCCCcccceeeccccccccccCCCCccCCcccccCCCcEEEECCCCcccc-cccHHHHHhCCeEEEecCcHHHHHH
Confidence 888887777766665421 122222221 112345556555432111 0015788999999999999999888
Q ss_pred HHHHHHhc-CCCcHHHHHHHHHhcCccchh-hhcccCCCCCEEEe
Q 023106 241 RVLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIK 283 (287)
Q Consensus 241 rvigr~i~-~G~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~ 283 (287)
|.+.|++. +|.+.+-+...+..+. |.+. ||.|.+..||++|.
T Consensus 157 rRI~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fq 200 (277)
T cd02029 157 QKIHRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQ 200 (277)
T ss_pred HHHHhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEe
Confidence 88888875 8999998888888888 7777 99999999999986
No 416
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.32 E-value=1.6e-12 Score=115.55 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=38.1
Q ss_pred CCCCceeccccceEEE-----e----cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHH
Q 023106 190 PVEDDILVGLQHKVVI-----V----DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAM 239 (287)
Q Consensus 190 ~~~~~LSgGekqRv~I-----~----~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~ 239 (287)
+.+.+||+||+||+.| . +|+++|+|| .+.+.|.++.+ .+|+|||+.+.+.
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~ 223 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFS 223 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHh
Confidence 4568999999999988 2 389999999 35556666654 2579999977654
No 417
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.32 E-value=2.2e-11 Score=103.19 Aligned_cols=170 Identities=22% Similarity=0.257 Sum_probs=106.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--HhhhCC---CCCCCChhHHHHHHHHHhcCCceeecc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHARRG---APWTFNPLLLLNCLKNLRNQGSVYAPS 182 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~~~---~~~~~~~~~~~tv~e~l~~~~~~~~~~ 182 (287)
++||.|++|||||||.+.|...+....+... +..|+.-... .....+ .+..++...+...+..+..+.....+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 5899999999999999999998851101111 2334332111 011111 222234445566677777777777777
Q ss_pred CCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHH-HHHHHHHHHh-cCCCcHHHHHHHH
Q 023106 183 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDT-AMQRVLKRHI-STGKPPDVAKWRI 260 (287)
Q Consensus 183 ~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~-~~~rvigr~i-~~G~~~~~~~~~~ 260 (287)
|+.....+.....-.-+...|.|.++.+++. ..+.++++..|+++.+.++ ...|.+-|++ ++|...+-..+.+
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~-----~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~ 155 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALN-----ERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMW 155 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcC-----HhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhc
Confidence 7765544333211112345566677766654 4677778889999999998 6667776666 4788777666664
Q ss_pred HhcCccchh-hhcccCCCCCEEEeC
Q 023106 261 EYNDRPNAE-LIMKSKKNADLVIKS 284 (287)
Q Consensus 261 ~~~~~~~~~-~i~~~~~~ad~ii~~ 284 (287)
..+.+.+. ++.|.+..||+++++
T Consensus 156 -~~~~~~~~~~~~~~~~~ad~~~~~ 179 (179)
T cd02028 156 -PSVPSGEEFIIPPLQEAAIVMFNS 179 (179)
T ss_pred -ccccCchhhcCCCchhccceeccC
Confidence 34444444 568889999999864
No 418
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.31 E-value=1.3e-12 Score=123.83 Aligned_cols=151 Identities=17% Similarity=0.117 Sum_probs=93.3
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcce-eeCC--------CCH-
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS--------QDP- 147 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi-~~~g--------~~~- 147 (287)
|.++|+-..-+... .++..++|.|++|--+-|+||||||||.|+|+|.|+-+ ...|. ++-- +.+
T Consensus 482 I~lenIpvItP~~~---vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP---vy~g~L~~P~~~~mFYIPQRPY 555 (728)
T KOG0064|consen 482 IILENIPVITPAGD---VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP---VYNGLLSIPRPNNIFYIPQRPY 555 (728)
T ss_pred eEEecCceeccCcc---eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCc---ccCCeeecCCCcceEeccCCCc
Confidence 66777765554322 26789999999999999999999999999999999987 34442 2111 100
Q ss_pred ---------------HHHhhhCCCCCCCChhHHHHHHHHHhcCCceee-ccCCccCCCCCCCceeccccceEEE-----e
Q 023106 148 ---------------KEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYA-PSFDHGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 148 ---------------~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
.+...++| +.+..+...++.+.+..-+.. ..|+. ....-+.||||||||+.+ +
T Consensus 556 ms~gtlRDQIIYPdS~e~~~~kg----~~d~dL~~iL~~v~L~~i~qr~~g~da--~~dWkd~LsgGekQR~~mARm~yH 629 (728)
T KOG0064|consen 556 MSGGTLRDQIIYPDSSEQMKRKG----YTDQDLEAILDIVHLEHILQREGGWDA--VRDWKDVLSGGEKQRMGMARMFYH 629 (728)
T ss_pred cCcCcccceeecCCcHHHHHhcC----CCHHHHHHHHHHhhHHHHHHhccChhh--hccHHhhccchHHHHHHHHHHHhc
Confidence 00011111 122233455555443211111 11221 122446799999999988 9
Q ss_pred cCCEEeEec-------chHHHHHhccCC----eEEEEcChHHHHH
Q 023106 207 DGNYLFLDG-------GVWKDVSSMFDE----KWFIEVDLDTAMQ 240 (287)
Q Consensus 207 ~p~lLllDE-------~~~~~l~~~~~~----~i~vtHd~~~~~~ 240 (287)
.|.+.+||| ++-..+.+..+. .+-|||-..+-.-
T Consensus 630 rPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 630 RPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKY 674 (728)
T ss_pred CcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHHH
Confidence 999999999 344444444332 3588898888766
No 419
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.29 E-value=6.2e-13 Score=114.63 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=27.5
Q ss_pred cccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 100 vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++++.+|++++|+||||||||||+++|++..
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHH
Confidence 45566689999999999999999999999543
No 420
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.27 E-value=3.2e-12 Score=119.55 Aligned_cols=134 Identities=19% Similarity=0.218 Sum_probs=80.4
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCccee------------eCCCCHHHHhhh--CC---CCCCCChh---
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQDPKEAHAR--RG---APWTFNPL--- 163 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~------------~~g~~~~~~~~~--~~---~~~~~~~~--- 163 (287)
..+|.++||+|+||-||||-+|+|+|.+. |.-|-. +.|..+...... .+ ...-.|.-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~---PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELK---PNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccc---cCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence 45799999999999999999999999998 765521 122222211110 01 11111110
Q ss_pred -HH--HHHHHHHhcCCcee-----eccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chH
Q 023106 164 -LL--LNCLKNLRNQGSVY-----APSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVW 218 (287)
Q Consensus 164 -~~--~tv~e~l~~~~~~~-----~~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~ 218 (287)
.. -++.+-+....... ...+. ....++.+.+|||||.||++| .++++.++|| .+.
T Consensus 174 Pk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~a 253 (591)
T COG1245 174 PKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAA 253 (591)
T ss_pred HHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHH
Confidence 00 12222222110000 00000 123467899999999999998 8999999999 344
Q ss_pred HHHHhccC---CeEEEEcChHHHHH
Q 023106 219 KDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 219 ~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+.++++.. .+++|.||+..+.-
T Consensus 254 r~Irel~~~~k~ViVVEHDLavLD~ 278 (591)
T COG1245 254 RVIRELAEDGKYVIVVEHDLAVLDY 278 (591)
T ss_pred HHHHHHhccCCeEEEEechHHHHHH
Confidence 55666664 36799999987754
No 421
>PRK15453 phosphoribulokinase; Provisional
Probab=99.25 E-value=2.8e-10 Score=102.01 Aligned_cols=173 Identities=13% Similarity=0.077 Sum_probs=112.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc-c-eeeCCCCH-----HHH------hhhCC----C--CCCCChhHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-A-SSFDSQDP-----KEA------HARRG----A--PWTFNPLLLL 166 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~-G-i~~~g~~~-----~~~------~~~~~----~--~~~~~~~~~~ 166 (287)
+.-++||.|.+||||||+.+.|+..+. ... + .++.+-+. ... ..+.+ . +..++...+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~---~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR---RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh---hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 456999999999999999999998775 221 1 23333211 010 11122 2 4455555566
Q ss_pred HHHHHHhcCCceeeccCCccC-----CCCCCCce----eccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHH
Q 023106 167 NCLKNLRNQGSVYAPSFDHGV-----GDPVEDDI----LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDT 237 (287)
Q Consensus 167 tv~e~l~~~~~~~~~~~~~~~-----~~~~~~~L----SgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~ 237 (287)
+.+..+..+.....+.|.... ..+.++.+ ..-+...|.|.+|-+.++. .-...+++++|..|+|..+.++
T Consensus 81 ~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~-~~~~~lr~~~DlkIfVdp~~dl 159 (290)
T PRK15453 81 QLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVV-TDQVDVAQHVDLLIGVVPIVNL 159 (290)
T ss_pred HHHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccc-cccHHHHHhCCeeEeeCCcHhH
Confidence 777777665554444443221 22222221 1112356666666554421 1125688889999999999999
Q ss_pred HHHHHHHHHhc-CCCcHHHHHHHHHhcCccchh-hhcccCCCCCEEEe
Q 023106 238 AMQRVLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIK 283 (287)
Q Consensus 238 ~~~rvigr~i~-~G~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~ 283 (287)
...|.+.|++. +|.+.+-+...+..+. |.+. ||.|.+..+|+.+.
T Consensus 160 r~irRI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfq 206 (290)
T PRK15453 160 EWIQKIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQ 206 (290)
T ss_pred HHHHHHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEE
Confidence 88888888875 8999998888888776 7777 99999999999885
No 422
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.25 E-value=1.2e-11 Score=107.59 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=39.5
Q ss_pred CCCCCCceeccccceEEE---------ecCCEEeEec-----------chHHHHHhccCC-----eEEEEcChHHHHH
Q 023106 188 GDPVEDDILVGLQHKVVI---------VDGNYLFLDG-----------GVWKDVSSMFDE-----KWFIEVDLDTAMQ 240 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I---------~~p~lLllDE-----------~~~~~l~~~~~~-----~i~vtHd~~~~~~ 240 (287)
....+.+||+||||++.+ .+|+++|+|| .+++.+.+..+. .+++|||+.....
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~ 197 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN 197 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence 456788999999998653 5899999999 455666555432 4799999866654
No 423
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.22 E-value=4.9e-12 Score=108.96 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=30.9
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|++|+. |++++|+||||||||||+|+|+|...
T Consensus 16 v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 16 VANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred ecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH
Confidence 778887775 69999999999999999999998763
No 424
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.15 E-value=3.1e-11 Score=93.29 Aligned_cols=75 Identities=20% Similarity=0.090 Sum_probs=55.0
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh---CCCCCCCChhHHHHHHH
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR---RGAPWTFNPLLLLNCLK 170 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~---~~~~~~~~~~~~~tv~e 170 (287)
.+|++++|++++|++++|+||||||||||++++. +| +.++|.++...... .-..+.+|.....++.+
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~lf~~ti~~ 73 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPELGLEIRLRL 73 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechhcchhhHHh
Confidence 3899999999999999999999999999999974 34 78888876443221 11223344433478999
Q ss_pred HHhcCCce
Q 023106 171 NLRNQGSV 178 (287)
Q Consensus 171 ~l~~~~~~ 178 (287)
||.+....
T Consensus 74 Ni~~~~~~ 81 (107)
T cd00820 74 NIFLITKK 81 (107)
T ss_pred hceeeeEE
Confidence 99885443
No 425
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.15 E-value=2e-11 Score=101.71 Aligned_cols=108 Identities=12% Similarity=0.092 Sum_probs=66.1
Q ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHhcCCcee
Q 023106 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVY 179 (287)
Q Consensus 101 sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~ 179 (287)
++.+.++.++.|+|||||||||+++.+...+- ...+ ... +... ..+.. ..... +.+ +
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~---~~~~~~~~-~~~~-----~~g~~-~~~~~--------~~~---i- 72 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALG---GAQSATRR-RSGV-----KAGCI-VAAVS--------AEL---I- 72 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHH---hcchhhhc-cCcc-----cCCCc-ceeeE--------EEE---e-
Confidence 34455667999999999999999999877765 4443 221 0000 00100 00000 000 0
Q ss_pred eccCCccCCCCCCCceeccccceEEE-----e----cCCEEeEec-----------chHHHHHhccC---CeEEEEcChH
Q 023106 180 APSFDHGVGDPVEDDILVGLQHKVVI-----V----DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLD 236 (287)
Q Consensus 180 ~~~~~~~~~~~~~~~LSgGekqRv~I-----~----~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~ 236 (287)
.....||+||++++.| . +|.++|+|| .+.+.+.++.. ..+++||+.+
T Consensus 73 ----------~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~ 142 (162)
T cd03227 73 ----------FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE 142 (162)
T ss_pred ----------hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 0112399999999887 2 789999999 34444554433 3579999999
Q ss_pred HHHH
Q 023106 237 TAMQ 240 (287)
Q Consensus 237 ~~~~ 240 (287)
+...
T Consensus 143 ~~~~ 146 (162)
T cd03227 143 LAEL 146 (162)
T ss_pred HHHh
Confidence 8764
No 426
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.14 E-value=2.9e-11 Score=125.25 Aligned_cols=164 Identities=17% Similarity=0.290 Sum_probs=108.8
Q ss_pred cccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCCh---hHHHHHH
Q 023106 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNP---LLLLNCL 169 (287)
Q Consensus 94 ~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~---~~~~tv~ 169 (287)
..+|+|++.-+++|+.+-++||.|||||||++.|+|-+....-..| +.++|.+..+...+..+.+..+. ...+||.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 3489999999999999999999999999999999998874333345 89999876554332222232222 2236777
Q ss_pred HHHhcCCceeec--cCC--------------------------ccCCCCCCCceeccccceEEE-----ecCCEEeEec-
Q 023106 170 KNLRNQGSVYAP--SFD--------------------------HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG- 215 (287)
Q Consensus 170 e~l~~~~~~~~~--~~~--------------------------~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE- 215 (287)
+.+.+..+...+ +++ ....+....-.|||||+||.+ .++.++.+||
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 777665443322 111 012244566789999999988 7889999999
Q ss_pred ----------chHHHHHhccC---CeEEEE--cChHHH---HHHHH----HHHhcCCCcHHHHH
Q 023106 216 ----------GVWKDVSSMFD---EKWFIE--VDLDTA---MQRVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 216 ----------~~~~~l~~~~~---~~i~vt--Hd~~~~---~~rvi----gr~i~~G~~~~~~~ 257 (287)
++.+.|+.+.+ ...+|+ ...++. ...++ |+++..|+.+++..
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 45555555544 334443 222222 22443 89999998877653
No 427
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.12 E-value=1.3e-11 Score=122.18 Aligned_cols=69 Identities=20% Similarity=0.330 Sum_probs=55.5
Q ss_pred CCCCCceeccccceEEE--------ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH--HHH-
Q 023106 189 DPVEDDILVGLQHKVVI--------VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL- 243 (287)
Q Consensus 189 ~~~~~~LSgGekqRv~I--------~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~--rvi- 243 (287)
-+...+|||||-|||-| ...-+.+||| .+++.|..+.+. +|+|.|+++.+.. +++
T Consensus 817 GQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IID 896 (935)
T COG0178 817 GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIID 896 (935)
T ss_pred CCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEE
Confidence 35678899999999988 3458999999 455555555554 5799999999987 776
Q ss_pred ---------HHHhcCCCcHHHHH
Q 023106 244 ---------KRHISTGKPPDVAK 257 (287)
Q Consensus 244 ---------gr~i~~G~~~~~~~ 257 (287)
|.+++.|+|++++.
T Consensus 897 LGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 897 LGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred cCCCCCCCCceEEEecCHHHHHh
Confidence 68999999999975
No 428
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.11 E-value=4.2e-11 Score=129.02 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=54.2
Q ss_pred CCCCCceeccccceEEE--------ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH--HHH-
Q 023106 189 DPVEDDILVGLQHKVVI--------VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL- 243 (287)
Q Consensus 189 ~~~~~~LSgGekqRv~I--------~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~--rvi- 243 (287)
.+...+|||||.||+-| ..+.+++||| .++..+.++.+ .+|+|.||++.+.. +++
T Consensus 1694 Gq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iid 1773 (1809)
T PRK00635 1694 GQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIE 1773 (1809)
T ss_pred CCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEE
Confidence 45778899999999987 2368999999 34445444444 46899999999998 665
Q ss_pred ---------HHHhcCCCcHHHHH
Q 023106 244 ---------KRHISTGKPPDVAK 257 (287)
Q Consensus 244 ---------gr~i~~G~~~~~~~ 257 (287)
|++++.|+|+++..
T Consensus 1774 lgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1774 MGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred cCCCcccCCCEEEEEeCHHHHhh
Confidence 68999999999964
No 429
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.06 E-value=1.4e-10 Score=98.10 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=34.3
Q ss_pred eeccccceEEE---------ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHH
Q 023106 195 ILVGLQHKVVI---------VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAM 239 (287)
Q Consensus 195 LSgGekqRv~I---------~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~ 239 (287)
||+||+||+.| .+|+++++|| .+.+.+.++... .|++||+.+.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~ 162 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE 162 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh
Confidence 99999999877 2799999999 344555554333 579999988764
No 430
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.04 E-value=2.2e-10 Score=103.06 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=34.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
.-++|+||||||||||+++|+|++. |.+| +.++|+++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v 149 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKV 149 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEe
Confidence 5789999999999999999999999 9999 88999875
No 431
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.03 E-value=5.8e-11 Score=103.90 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=41.9
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHH-HhcccCCCcceeeCCCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDSQD 146 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~G-ll~~~~p~~Gi~~~g~~ 146 (287)
+.+|++|.+.+|++++|+||||+|||||+++|++ .+. +..|..+.+..
T Consensus 20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l---a~~G~~v~a~~ 68 (222)
T cd03287 20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM---AQIGSFVPASS 68 (222)
T ss_pred EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH---HhCCCEEEcCc
Confidence 7899999999999999999999999999999999 555 77886655544
No 432
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.02 E-value=1.5e-10 Score=100.95 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=32.0
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+.+|+++++.+ ++++|+||||+|||||++.|++..
T Consensus 20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 77899999887 999999999999999999998754
No 433
>PRK06696 uridine kinase; Validated
Probab=99.01 E-value=1e-08 Score=89.78 Aligned_cols=172 Identities=26% Similarity=0.380 Sum_probs=94.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--e-e--eCCCCHHH-HhhhCC--CC-----CCCChhHHHH-HHH
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--S-S--FDSQDPKE-AHARRG--AP-----WTFNPLLLLN-CLK 170 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i-~--~~g~~~~~-~~~~~~--~~-----~~~~~~~~~t-v~e 170 (287)
...-+|||.|++|||||||.+.|+..++ . .| + . .|+.-... .+...+ .+ ..++...+.. +++
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~---~-~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~ 95 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIK---K-RGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLD 95 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH---H-cCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHh
Confidence 3567999999999999999999999986 3 23 2 2 34432211 111111 11 1233322221 122
Q ss_pred HHhcCC--ceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHh-
Q 023106 171 NLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHI- 247 (287)
Q Consensus 171 ~l~~~~--~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i- 247 (287)
.+.... .+..+.++...........---+...+.|.++.+++- ..+...++..|+|+.+.+....|+..|..
T Consensus 96 ~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~-----~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~ 170 (223)
T PRK06696 96 PLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLR-----PELRDLWDYKIFLDTDFEVSRRRGAKRDTE 170 (223)
T ss_pred hccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhh-----hhHHhhCCEEEEEECCHHHHHHHHHHhhhh
Confidence 121111 1222233332221110000000123355556655431 35666778889999999999998887765
Q ss_pred cCCCcHHHHHHHHHhcCccchh-hhccc--CCCCCEEEeCCC
Q 023106 248 STGKPPDVAKWRIEYNDRPNAE-LIMKS--KKNADLVIKSID 286 (287)
Q Consensus 248 ~~G~~~~~~~~~~~~~~~~~~~-~i~~~--~~~ad~ii~~~~ 286 (287)
..|...+.... +...+.+.+. |+.+. +..||+||++.+
T Consensus 171 ~~g~~~~~~~~-~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 171 AFGSYEEAEKM-YLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred hhCCchHHHHH-HHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 36765555444 4456778877 55444 788999999865
No 434
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=4.9e-10 Score=101.27 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=27.6
Q ss_pred ccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 97 l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
++++.+++.+| +.+|+|||||||||++..|.=++
T Consensus 12 ~~~~~i~~~~~-~~~i~G~nGsGKS~il~ai~~~~ 45 (276)
T cd03241 12 IEELELDFEEG-LTVLTGETGAGKSILLDALSLLL 45 (276)
T ss_pred eeeeEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 45666677666 78999999999999999987554
No 435
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.98 E-value=1.9e-10 Score=117.02 Aligned_cols=114 Identities=8% Similarity=0.117 Sum_probs=68.9
Q ss_pred cccccCCC-eEEEEECCCCCCHHHHHHHHHHH-hcccCCCcceee-CCCCHHHHhhhCCCCCCCChhHHHHHHHHHhcCC
Q 023106 100 LASNVNVK-HIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSF-DSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG 176 (287)
Q Consensus 100 vsl~i~~G-eivgIiGpNGsGKSTLlk~L~Gl-l~~~~p~~Gi~~-~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~ 176 (287)
+|+.+..+ .+++|+||||+|||||+|+|+|. +. +..|..+ .+.... +++..+....+..-++
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~~Vpa~~~~~-------~~~~d~i~~~i~~~~s----- 378 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM---FQSGIPIPANEHSE-------IPYFEEIFADIGDEQS----- 378 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH---HHhCCCccCCcccc-------ccchhheeeecChHhH-----
Confidence 68888877 99999999999999999999998 44 5566221 111100 1110000000000011
Q ss_pred ceeeccCCccCCCCCCCceeccccceEEE----ecCCEEeEec-----------ch-HHHHHhccC---CeEEEEcChHH
Q 023106 177 SVYAPSFDHGVGDPVEDDILVGLQHKVVI----VDGNYLFLDG-----------GV-WKDVSSMFD---EKWFIEVDLDT 237 (287)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~LSgGekqRv~I----~~p~lLllDE-----------~~-~~~l~~~~~---~~i~vtHd~~~ 237 (287)
.......+|+++++.+.| .++.++|+|| .+ +..+..+.+ .++++||+.++
T Consensus 379 -----------i~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 379 -----------IEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred -----------HhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 112456688999988766 4889999999 12 222333322 25789999887
Q ss_pred HH
Q 023106 238 AM 239 (287)
Q Consensus 238 ~~ 239 (287)
..
T Consensus 448 ~~ 449 (771)
T TIGR01069 448 KA 449 (771)
T ss_pred HH
Confidence 54
No 436
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.97 E-value=1.9e-09 Score=91.89 Aligned_cols=153 Identities=22% Similarity=0.211 Sum_probs=93.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCC-----HHH---HhhhCCCCCCCChhHHHHHHHHHhcCCceee
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQD-----PKE---AHARRGAPWTFNPLLLLNCLKNLRNQGSVYA 180 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~-----~~~---~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~ 180 (287)
+|||.|++|||||||.+.|+..+. ...-+..|+.- ... ...+.+.+..++...+...+..+..+.....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~---~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~ 77 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP---NCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPK 77 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC---CCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccC
Confidence 589999999999999999999874 11113333321 111 1234556777887777888888877654322
Q ss_pred ccCCccCCCCC-------------CCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHh
Q 023106 181 PSFDHGVGDPV-------------EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHI 247 (287)
Q Consensus 181 ~~~~~~~~~~~-------------~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i 247 (287)
+.++....... ..........++.|.++.+++.|+ .+.+++|..||+.-|.+.+.+|.+.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~----~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~ 153 (187)
T cd02024 78 FLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK----PLVDLFDIRYFLRVPYETCKRRREARTG 153 (187)
T ss_pred cccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH----HHHhhcCceeEecCCHHHHHHHHHHcCC
Confidence 22222111100 011122345668889998887773 5778999999999999999998886542
Q ss_pred cC--C-CcHHHHHHHHHhcCccchh
Q 023106 248 ST--G-KPPDVAKWRIEYNDRPNAE 269 (287)
Q Consensus 248 ~~--G-~~~~~~~~~~~~~~~~~~~ 269 (287)
.. | -..+ -..++...|+|++.
T Consensus 154 ~~~~~~~w~D-p~~yf~~~v~p~y~ 177 (187)
T cd02024 154 YVTLEGFWPD-PPGYFDGHVWPMYL 177 (187)
T ss_pred ccccCcccCC-CCcccccccchhHH
Confidence 21 2 1111 12445567777764
No 437
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.96 E-value=2.3e-10 Score=108.89 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=42.2
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eeeCCCCH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQDP 147 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~~g~~~ 147 (287)
+|++||+++.+|++++|+|||||||||||+ +|++. |++| +.++|.++
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~---~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK---FSEGYEFFLDATHS 69 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC---CCCCCEEEECCEEC
Confidence 899999999999999999999999999999 67777 7776 88998753
No 438
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.95 E-value=3.8e-10 Score=98.86 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=32.1
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
+.+|+++++.++++++|.||||+|||||+++++-
T Consensus 19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999999999999999873
No 439
>PRK07667 uridine kinase; Provisional
Probab=98.91 E-value=2.8e-08 Score=85.15 Aligned_cols=165 Identities=18% Similarity=0.257 Sum_probs=95.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccC-CCcceeeCCCCHHH-HhhhCCCCC-------CCChhHHH-HHHHHHhcC
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIW-PQKASSFDSQDPKE-AHARRGAPW-------TFNPLLLL-NCLKNLRNQ 175 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~-p~~Gi~~~g~~~~~-~~~~~~~~~-------~~~~~~~~-tv~e~l~~~ 175 (287)
..-+|||-|++|||||||.+.|...+.... +...+..++.-... .+...+... .++...+. .++..+..+
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~ 95 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE 95 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence 446999999999999999999999886210 11124445432211 111222211 12222222 345666666
Q ss_pred CceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhcCCCcHHH
Q 023106 176 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDV 255 (287)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~~G~~~~~ 255 (287)
..+..|.++............. ....+.|.++.+++ . ..+.++++..|+|+.+.+...+|++.|. |.
T Consensus 96 ~~i~~P~~d~~~~~~~~~~~~~-~~~~vvIvEG~~l~-~----~~~~~~~d~~v~V~~~~~~~~~R~~~r~---~~---- 162 (193)
T PRK07667 96 TKLTLPFYHDETDTCEMKKVQI-PIVGVIVIEGVFLQ-R----KEWRDFFHYMVYLDCPRETRFLRESEET---QK---- 162 (193)
T ss_pred CeEEEeeeccccccccccceec-CCCCEEEEEehhhh-h----hhHHhhceEEEEEECCHHHHHHHHhccc---Hh----
Confidence 6666777776543322111111 12357777777642 1 4466788889999999999988876432 22
Q ss_pred HHHHHHhcCccchh-hhcc--cCCCCCEEEe
Q 023106 256 AKWRIEYNDRPNAE-LIMK--SKKNADLVIK 283 (287)
Q Consensus 256 ~~~~~~~~~~~~~~-~i~~--~~~~ad~ii~ 283 (287)
....+..++.+.+. |+.. .+..||+||+
T Consensus 163 ~~~~~~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 163 NLSKFKNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred HHHHHHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 22334445566766 4332 3888999984
No 440
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.86 E-value=1.3e-09 Score=94.84 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=26.8
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
+-+|+++.=..+.+++|+||||+|||||+|.|+.
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence 4456665533348999999999999999999984
No 441
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.84 E-value=1.5e-09 Score=92.29 Aligned_cols=105 Identities=16% Similarity=0.164 Sum_probs=57.5
Q ss_pred EEEEECCCCCCHHHHHHHHH-HHhcccCCCcceeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHhcCCceeeccCCccC
Q 023106 109 IVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV 187 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~-Gll~~~~p~~Gi~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 187 (287)
++.|.||||+|||||+|.++ ..+- ...|..+...... ++.. +.+ +.... ....
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~l---a~~G~~v~a~~~~-------~~~~----------d~i-----l~~~~-~~d~ 54 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIM---AQIGSFVPAESAE-------LPVF----------DRI-----FTRIG-ASDS 54 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH---HHhCCCeeehheE-------eccc----------ceE-----EEEeC-CCCc
Confidence 36799999999999999998 3333 3444222111100 1110 000 00000 1112
Q ss_pred CCCCCCceeccccceEEE----ecCCEEeEec-----------chH-HHHHhccC----CeEEEEcChHHHH
Q 023106 188 GDPVEDDILVGLQHKVVI----VDGNYLFLDG-----------GVW-KDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I----~~p~lLllDE-----------~~~-~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
.......+|+|+++...+ .+|.++|+|| .+. ..++.+.+ ..+++||+.+...
T Consensus 55 ~~~~~s~fs~~~~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~ 126 (185)
T smart00534 55 LAQGLSTFMVEMKETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTK 126 (185)
T ss_pred hhccccHHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHH
Confidence 234567788888876544 4899999999 122 22233322 2479999996543
No 442
>PLN02796 D-glycerate 3-kinase
Probab=98.83 E-value=1e-08 Score=94.66 Aligned_cols=170 Identities=20% Similarity=0.176 Sum_probs=100.8
Q ss_pred ccccccccc---CCCe-----EEEEECCCCCCHHHHHHHHHHHhcccCCC---cc-eeeCCCCHHHH-------------
Q 023106 96 PTSALASNV---NVKH-----IVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KA-SSFDSQDPKEA------------- 150 (287)
Q Consensus 96 ~l~~vsl~i---~~Ge-----ivgIiGpNGsGKSTLlk~L~Gll~~~~p~---~G-i~~~g~~~~~~------------- 150 (287)
+++++++.+ .+|+ ++||+|++|||||||++.|.+++. +. .| +.+||..+...
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~---~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~ 157 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN---ATGRRAASLSIDDFYLTAADQAKLAEANPGNA 157 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc---ccCCceeEEEECCcccchhhHHHHHhhCcchh
Confidence 677888887 4444 599999999999999999999998 54 35 67888753211
Q ss_pred -hhhCCCCCCCChhHHHHHHHHHh----cCCceeeccCCccCC----CCCCCc--eeccccceEEEecCCEEeEec----
Q 023106 151 -HARRGAPWTFNPLLLLNCLKNLR----NQGSVYAPSFDHGVG----DPVEDD--ILVGLQHKVVIVDGNYLFLDG---- 215 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~~tv~e~l~----~~~~~~~~~~~~~~~----~~~~~~--LSgGekqRv~I~~p~lLllDE---- 215 (287)
...+|.+..++...+...++.+. .+..+..|.|++... ++.+.+ -..-....|.|.++.++-+-.
T Consensus 158 Ll~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~ 237 (347)
T PLN02796 158 LLELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPD 237 (347)
T ss_pred hhhcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChH
Confidence 11234556666666677777776 455677889987653 343321 111134577777776665521
Q ss_pred ----------chH-------HHHHhccCCeE-EEEcChHHHHHHHH---HHHhc---CCCcHHHHHHHHHhcCccchh
Q 023106 216 ----------GVW-------KDVSSMFDEKW-FIEVDLDTAMQRVL---KRHIS---TGKPPDVAKWRIEYNDRPNAE 269 (287)
Q Consensus 216 ----------~~~-------~~l~~~~~~~i-~vtHd~~~~~~rvi---gr~i~---~G~~~~~~~~~~~~~~~~~~~ 269 (287)
.+- ..+...++..| +-.-|.+.+.++.. .+..+ .|-+++.+.... .+..|.++
T Consensus 238 ~l~~~~~~l~~vN~~L~~y~~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v~~FV-~~~mP~y~ 314 (347)
T PLN02796 238 AVKAVDPQLEVVNKNLEAYYDAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEVADFV-SRYMPAYK 314 (347)
T ss_pred HhhccChhHHHHHHHHHHHHHHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHHHH
Confidence 011 11122233334 44477888887444 22222 244555555544 35566665
No 443
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.75 E-value=2.4e-09 Score=99.80 Aligned_cols=112 Identities=14% Similarity=0.176 Sum_probs=62.4
Q ss_pred ccccccccCCC-----eEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eeeCCCCHHHHhhhCCCCCCCChhHHHHHH
Q 023106 97 TSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQDPKEAHARRGAPWTFNPLLLLNCL 169 (287)
Q Consensus 97 l~~vsl~i~~G-----eivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~~g~~~~~~~~~~~~~~~~~~~~~~tv~ 169 (287)
+.++.|.|..| +++..+|.||.|||||+++++|.++ |+.| +-...... ..+.+.--++...-....
T Consensus 352 ~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~---pd~~~e~p~lnVSy----kpqkispK~~~tvR~ll~ 424 (592)
T KOG0063|consen 352 VGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK---PDEGGEIPVLNVSY----KPQKISPKREGTVRQLLH 424 (592)
T ss_pred eeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC---CCccCcccccceec----cccccCccccchHHHHHH
Confidence 34555555554 6899999999999999999999999 8877 22222110 001110000000000000
Q ss_pred HHHhcC-------CceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec
Q 023106 170 KNLRNQ-------GSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG 215 (287)
Q Consensus 170 e~l~~~-------~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE 215 (287)
+.+... .....|..-....+..+..|||||+|||++ ..+++.+.||
T Consensus 425 ~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDE 482 (592)
T KOG0063|consen 425 TKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDE 482 (592)
T ss_pred HHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecC
Confidence 111000 000001111123355778899999999988 6789999999
No 444
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.73 E-value=1.2e-08 Score=93.70 Aligned_cols=134 Identities=10% Similarity=0.082 Sum_probs=77.4
Q ss_pred ccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHhcCCc
Q 023106 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS 177 (287)
Q Consensus 99 ~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~ 177 (287)
=+++.+..|..++|+||+|||||||+++|+++++ +..+ +.+.. ..+.... .+ ..
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~---~~~~iv~ied--~~El~~~--~~------------------~~ 190 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP---KDERIITIED--TREIFLP--HP------------------NY 190 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC---ccccEEEEcC--ccccCCC--CC------------------CE
Confidence 3678899999999999999999999999999998 8777 44432 1111000 00 00
Q ss_pred eeeccCCccCCCCCCCceeccccceEEE-ecCCEEeEec----chHHHHHhccCC--e-EEEEcChHHHHH--HHH----
Q 023106 178 VYAPSFDHGVGDPVEDDILVGLQHKVVI-VDGNYLFLDG----GVWKDVSSMFDE--K-WFIEVDLDTAMQ--RVL---- 243 (287)
Q Consensus 178 ~~~~~~~~~~~~~~~~~LSgGekqRv~I-~~p~lLllDE----~~~~~l~~~~~~--~-i~vtHd~~~~~~--rvi---- 243 (287)
.... +..... .....+..+--+.++ .+|+++++|| +.+..+..+... + +.+.|..+.... |++
T Consensus 191 ~~l~-~~~~~~--~~~~~~~~~~l~~~Lr~~pd~ii~gE~r~~e~~~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~ 267 (308)
T TIGR02788 191 VHLF-YSKGGQ--GLAKVTPKDLLQSCLRMRPDRIILGELRGDEAFDFIRAVNTGHPGSITTLHAGSPEEAFEQLALMVK 267 (308)
T ss_pred EEEE-ecCCCC--CcCccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhh
Confidence 0000 000000 000111111111123 7999999999 555555554432 3 677799885554 555
Q ss_pred HHHhcCCCcHHHHHHHH
Q 023106 244 KRHISTGKPPDVAKWRI 260 (287)
Q Consensus 244 gr~i~~G~~~~~~~~~~ 260 (287)
++....|.+.+.+....
T Consensus 268 ~~~~~~g~~~~~~~~~i 284 (308)
T TIGR02788 268 SSQAGLGLDFAYIVKLV 284 (308)
T ss_pred ccccccCCCHHHHHHHH
Confidence 34555688888875443
No 445
>PRK08233 hypothetical protein; Provisional
Probab=98.73 E-value=2.7e-07 Score=77.43 Aligned_cols=151 Identities=25% Similarity=0.369 Sum_probs=78.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHH----H--HhhhCCCCCCCChhHHHHHHHHHhcCCcee
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPK----E--AHARRGAPWTFNPLLLLNCLKNLRNQGSVY 179 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~----~--~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~ 179 (287)
++.+|+|.|++|||||||.+.|+..+. ...-+..++.... . .....+. .+....+....+.+...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~---~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~---- 72 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK---NSKALYFDRYDFDNCPEDICKWIDKGA--NYSEWVLTPLIKDIQEL---- 72 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC---CCceEEECCEEcccCchhhhhhhhccC--ChhhhhhHHHHHHHHHH----
Confidence 467999999999999999999999875 2211333332110 0 0001111 11111110111111100
Q ss_pred eccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhcCCCcHHHH--H
Q 023106 180 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVA--K 257 (287)
Q Consensus 180 ~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~~G~~~~~~--~ 257 (287)
++. ....+.|.+..+..+ ...+.+.++..|++..+.+....|++.|.....+.+++. .
T Consensus 73 ---------------~~~-~~~~~vivd~~~~~~----~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 132 (182)
T PRK08233 73 ---------------IAK-SNVDYIIVDYPFAYL----NSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDL 132 (182)
T ss_pred ---------------HcC-CCceEEEEeeehhhc----cHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHH
Confidence 000 011333444333322 245666778889999999999888876654332222221 2
Q ss_pred HHHHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 258 WRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 258 ~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
+.+...++|.+. ++.+.+..++++|++.
T Consensus 133 ~~~~~~~~~~y~~~~~~~~~~~~~vId~~ 161 (182)
T PRK08233 133 KHYLNYARPLYLEALHTVKPNADIVLDGA 161 (182)
T ss_pred HHHHHHHHHHHHHHhhcCccCCeEEEcCC
Confidence 334445566665 5666667889999753
No 446
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.70 E-value=1.5e-09 Score=94.48 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=33.3
Q ss_pred CceeccccceEEE---------ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH
Q 023106 193 DDILVGLQHKVVI---------VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 193 ~~LSgGekqRv~I---------~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
..||||||..++| .+.++++||| .+...|.++.+ +.|++||+......
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~ 204 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFED 204 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4899999999877 4678999999 56667777663 46899999877653
No 447
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.70 E-value=3.8e-07 Score=85.97 Aligned_cols=160 Identities=18% Similarity=0.173 Sum_probs=93.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---cc-eeeCCCCHH--HH-h-----------hhCCCCCCCChhHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KA-SSFDSQDPK--EA-H-----------ARRGAPWTFNPLLLLN 167 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~---~G-i~~~g~~~~--~~-~-----------~~~~~~~~~~~~~~~t 167 (287)
+.-+|||.|++|||||||++.|.+++. +. .| +.+||.... .. . ..+|.+..++......
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~---~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~e 287 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFR---VTGRKSATLSIDDFYLTAEGQAELRERNPGNALLELRGNAGSHDLQFSVE 287 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc---ccCCceEEEEECCccCChHHHHHHHhhCccchhhcccCCCccccHhhHHH
Confidence 458999999999999999999999997 54 45 678886531 11 0 1123455666655555
Q ss_pred HHHHH----hcCCceeeccCCccCC----CCCCCce--eccccceEEEecCCEEeEec-----------c---hHHHHHh
Q 023106 168 CLKNL----RNQGSVYAPSFDHGVG----DPVEDDI--LVGLQHKVVIVDGNYLFLDG-----------G---VWKDVSS 223 (287)
Q Consensus 168 v~e~l----~~~~~~~~~~~~~~~~----~~~~~~L--SgGekqRv~I~~p~lLllDE-----------~---~~~~l~~ 223 (287)
+++.+ ..+..+..|.|++... ++.+.+- ..-....|.|.||.++.+-. + +-+.|..
T Consensus 288 ~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~~l~~VN~~L~~ 367 (460)
T PLN03046 288 TLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDPQLEVVNKNLEA 367 (460)
T ss_pred HHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccChhHHHHHHHHHH
Confidence 56655 3566677888887653 3433211 11134578887877766632 0 1111222
Q ss_pred -------ccCCeE-EEEcChHHHHHHHH---HHHhcC---CCcHHHHHHHHHhcCccchh
Q 023106 224 -------MFDEKW-FIEVDLDTAMQRVL---KRHIST---GKPPDVAKWRIEYNDRPNAE 269 (287)
Q Consensus 224 -------~~~~~i-~vtHd~~~~~~rvi---gr~i~~---G~~~~~~~~~~~~~~~~~~~ 269 (287)
.++..| +-..|.+.+.++.. .+.... |-.++.+.... ..++|.++
T Consensus 368 Y~~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~FV-~~YmPaY~ 426 (460)
T PLN03046 368 YYDAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMDFV-SRYLPAYK 426 (460)
T ss_pred HHHHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH-HHhhhHHH
Confidence 222223 44577788887554 222222 44555555544 46677776
No 448
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.61 E-value=2.8e-08 Score=84.54 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=38.4
Q ss_pred ccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC
Q 023106 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS 144 (287)
Q Consensus 97 l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g 144 (287)
.+-+.+.+.+|+.++|+||||||||||++.|+|+++ ++.| +.+.+
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~i~ied 60 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERIITIED 60 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEECC
Confidence 344567788999999999999999999999999998 8888 55544
No 449
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.60 E-value=3e-08 Score=96.27 Aligned_cols=61 Identities=21% Similarity=0.293 Sum_probs=53.6
Q ss_pred ecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 80 ~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
+.|+++.||+.. +++++++.+..|+.++|+||||+|||||++.|.|+++ |.+| +.+.+..+
T Consensus 187 ~~d~~~v~Gq~~----~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp---p~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQEQ----GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP---DLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECcHH----HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC---CCCCcEEEecchh
Confidence 458888888766 8899999999999999999999999999999999999 9988 66666544
No 450
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.57 E-value=1e-07 Score=83.26 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=33.8
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+-+|++|++.+|++++|.||||+|||||++++++..
T Consensus 19 v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 19 VPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred EEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 779999999999999999999999999999998864
No 451
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.51 E-value=6.7e-08 Score=98.77 Aligned_cols=116 Identities=9% Similarity=0.042 Sum_probs=65.5
Q ss_pred ccccC-CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHhcCCcee
Q 023106 101 ASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVY 179 (287)
Q Consensus 101 sl~i~-~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~ 179 (287)
++.+. .+.++.|.|||++||||+||.++...- ....|..+.-.. ..-+.+++++ .
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~~--maq~G~~vpa~~----------------~~~i~~~~~i------~ 375 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAAL--MAKSGLPIPANE----------------PSEIPVFKEI------F 375 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHHHH--HHHhCCCcccCC----------------CccccccceE------E
Confidence 34443 356899999999999999999965421 133442211100 0001111111 1
Q ss_pred eccCCccCCCCCCCceeccccceEEE----ecCCEEeEec-----------chHH-HHHhccC---CeEEEEcChHHHHH
Q 023106 180 APSFDHGVGDPVEDDILVGLQHKVVI----VDGNYLFLDG-----------GVWK-DVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 180 ~~~~~~~~~~~~~~~LSgGekqRv~I----~~p~lLllDE-----------~~~~-~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
...-+..........+|++|++++.| .+|.++|+|| .+.. .+..+.+ .++++||+.++...
T Consensus 376 ~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 376 ADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKAL 455 (782)
T ss_pred EecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHH
Confidence 11111112234677899999999877 4899999999 1222 2222222 25799999887764
No 452
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.51 E-value=7.1e-08 Score=92.03 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=54.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeC---CCCH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFD---SQDP 147 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~---g~~~ 147 (287)
.+.++.+++++.|... +.+++.++ .|.+|++++|+|+||||||||+++|+++.. |+.| +.+. |.++
T Consensus 137 p~~~~r~~v~~~l~TG---i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev 206 (450)
T PRK06002 137 PPAMTRARVETGLRTG---VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREV 206 (450)
T ss_pred CCCeEeecceEEcCCC---cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccH
Confidence 3468999999999643 23888885 999999999999999999999999999998 8888 5554 4554
No 453
>PRK13695 putative NTPase; Provisional
Probab=98.49 E-value=7.8e-08 Score=80.77 Aligned_cols=24 Identities=38% Similarity=0.866 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++|+|+||||||||++.|++.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999876
No 454
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.46 E-value=4.2e-07 Score=80.02 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=39.2
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHH-HHHHHHHhcccCCCcc-eeeCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTL-AAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTL-lk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
+.++++.+.+++ -+++|+++.|+|+|||||||| ++++.+.++ +... +++...
T Consensus 8 ~~~~~ld~~l~g-------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~---~g~~~~yi~~e 61 (230)
T PRK08533 8 LSRDELHKRLGG-------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQ---NGYSVSYVSTQ 61 (230)
T ss_pred EEEeeeehhhCC-------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEEeCC
Confidence 556777776654 257899999999999999999 689998876 5444 455443
No 455
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.41 E-value=3.7e-07 Score=63.46 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=29.4
Q ss_pred ccccccccCC-CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 97 TSALASNVNV-KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 97 l~~vsl~i~~-GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++.++++.+ |.++.|.|+||||||||+.+|.=++-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3445566765 56999999999999999999988776
No 456
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.40 E-value=9.6e-07 Score=74.59 Aligned_cols=127 Identities=19% Similarity=0.198 Sum_probs=70.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHH----HhhhCCCCCCCCh-hHHHHHHHHHhcCCceee
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKE----AHARRGAPWTFNP-LLLLNCLKNLRNQGSVYA 180 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~----~~~~~~~~~~~~~-~~~~tv~e~l~~~~~~~~ 180 (287)
+|++++|+|+||||||||+++|++++. + +.++|.++.. .....++++..+. ....+++.++.+.. ..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~---~---~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~- 73 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS---A---KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSL-YK- 73 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC---C---EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHH-Hh-
Confidence 589999999999999999999999987 5 4666665321 1123455444432 12355656655321 00
Q ss_pred ccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCC--eEEEEcChHHHHHHHHHHHhcCCCcHHHHHH
Q 023106 181 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--KWFIEVDLDTAMQRVLKRHISTGKPPDVAKW 258 (287)
Q Consensus 181 ~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~--~i~vtHd~~~~~~rvigr~i~~G~~~~~~~~ 258 (287)
.. +. ..|.-. .+.....+.+++.... .|++.++.+.+..|+..|-- ...+.+++..
T Consensus 74 ----------~~-------~~-g~iv~s---~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~-~~~~~~vl~~ 131 (176)
T PRK09825 74 ----------KN-------ET-GFIVCS---SLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAG-HFMPPDLLQS 131 (176)
T ss_pred ----------cC-------CC-EEEEEE---ecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccC-CCCCHHHHHH
Confidence 00 00 012111 1222222333333332 36888999998888875532 2235666666
Q ss_pred HHHh
Q 023106 259 RIEY 262 (287)
Q Consensus 259 ~~~~ 262 (287)
++..
T Consensus 132 Q~~~ 135 (176)
T PRK09825 132 QFDA 135 (176)
T ss_pred HHHH
Confidence 5543
No 457
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.38 E-value=2e-07 Score=87.24 Aligned_cols=133 Identities=16% Similarity=0.082 Sum_probs=76.0
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHH-----------hh-h--CC---CCCCCC----hh
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEA-----------HA-R--RG---APWTFN----PL 163 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~-----------~~-~--~~---~~~~~~----~~ 163 (287)
.+|++.|++|-||-||||-+++++|-++ |.-|-+.++.+..+. ++ + .+ ....+| .+
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~k---pnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ip 174 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIP 174 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCC---CCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHH
Confidence 4799999999999999999999999998 766533322221110 00 0 00 000111 01
Q ss_pred HH--HHHHHHHhcCCceeec------cCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHH
Q 023106 164 LL--LNCLKNLRNQGSVYAP------SFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWK 219 (287)
Q Consensus 164 ~~--~tv~e~l~~~~~~~~~------~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~ 219 (287)
.. .++-..+..-...... .--....++.+.+|||||-||.+| +..++.++|| ....
T Consensus 175 r~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~ 254 (592)
T KOG0063|consen 175 RAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAI 254 (592)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHH
Confidence 00 1111111110000000 000113467889999999999777 8899999999 1222
Q ss_pred HHHhccC---CeEEEEcChHHHHH
Q 023106 220 DVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 220 ~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.|+.+.. .+|+|.||+.....
T Consensus 255 ~IRsl~~p~~YiIVVEHDLsVLDy 278 (592)
T KOG0063|consen 255 TIRSLINPDRYIIVVEHDLSVLDY 278 (592)
T ss_pred HHHHhhCCCCeEEEEEeechHHHh
Confidence 3344433 36899999998865
No 458
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.37 E-value=2.2e-07 Score=88.58 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=53.4
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
+.++.+.++..|... +.+++++ |.+.+|++++|+|+||+|||||+++|+++.. ++.| +.+.|..
T Consensus 128 ~~~~r~~v~~~l~tG---i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~vi~~iGeR 192 (433)
T PRK07594 128 PAMVRQPITQPLMTG---IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNVLVLIGER 192 (433)
T ss_pred CceeccCHhheeCCC---ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC---CCEEEEEEECCC
Confidence 357888888888432 2389999 9999999999999999999999999999998 8888 5566653
No 459
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.35 E-value=2.6e-07 Score=88.04 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=38.5
Q ss_pred cccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 94 ~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
+.+++++ |.+.+|++++|+|+||+|||||+++|+|+.. ++.+
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~---~dv~ 184 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ---ADVV 184 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC---CCeE
Confidence 3489999 9999999999999999999999999999988 7754
No 460
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.33 E-value=3.7e-07 Score=87.40 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=42.2
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
+++++ |.+.+|++++|+|+||+|||||+++|+++.. ++.| +.+.|+
T Consensus 148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~gvI~~~Ge 194 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS---ADLNVIALIGE 194 (438)
T ss_pred hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEEec
Confidence 89999 9999999999999999999999999999998 8889 666554
No 461
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.32 E-value=1.5e-06 Score=77.39 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=29.3
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.+.+|++++|+||+|+|||||++.|.+.+.
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 5788999999999999999999999999887
No 462
>PRK08149 ATP synthase SpaL; Validated
Probab=98.31 E-value=4.8e-07 Score=86.13 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=44.6
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc---c-eeeCCCCHHH
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---A-SSFDSQDPKE 149 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~---G-i~~~g~~~~~ 149 (287)
.+++++ +.+.+|++++|+|+||+|||||+++|+++.. ++. | +-..|.++..
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~---~dv~v~g~Ig~rg~ev~e 194 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE---ADVFVIGLIGERGREVTE 194 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC---CCeEEEEEEeeCCccHHH
Confidence 389999 9999999999999999999999999999887 665 5 6777877643
No 463
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.31 E-value=4.2e-07 Score=83.72 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=40.5
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS 144 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g 144 (287)
+++++ +.+.+|++++|+|+||+|||||+++|++... ++.| +...|
T Consensus 59 aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~~vi~~iG 104 (326)
T cd01136 59 AIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT---ADVNVIALIG 104 (326)
T ss_pred EEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEe
Confidence 89999 9999999999999999999999999999998 8877 44444
No 464
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.28 E-value=5.7e-07 Score=84.58 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=47.3
Q ss_pred EEEecCchhhhhhhhhcccccc-----------ccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 77 VVEARCMDEVYDALAQRLLPTS-----------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~-----------~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-++++||++.|.+.. .+|+ |+++.|.+|+.++|+||+|+|||||++.|+..+.
T Consensus 130 ri~Fe~LTf~YP~er---~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPNER---LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCCcc---ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 599999999997532 2675 9999999999999999999999999999999876
No 465
>PRK06547 hypothetical protein; Provisional
Probab=98.27 E-value=2.8e-05 Score=65.47 Aligned_cols=57 Identities=11% Similarity=-0.024 Sum_probs=38.7
Q ss_pred HHHHhccC-----CeEEEEcChHHHHHHHHHHHhcCCCcHHHHHHHHHhcCccchh-hh--cccCCCCCEEEe
Q 023106 219 KDVSSMFD-----EKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LI--MKSKKNADLVIK 283 (287)
Q Consensus 219 ~~l~~~~~-----~~i~vtHd~~~~~~rvigr~i~~G~~~~~~~~~~~~~~~~~~~-~i--~~~~~~ad~ii~ 283 (287)
..++++++ ..|+++-+.+....|++.|. |. ...++ ..+.+.++ |+ .+.+.+||+++.
T Consensus 107 ~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd---~~----~~~~~-~~w~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 107 AANVALASLLGEVLTVWLDGPEALRKERALARD---PD----YAPHW-EMWAAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred HHHHHHhccCCCEEEEEEECCHHHHHHHHHhcC---ch----hhHHH-HHHHHHHHHHHhcCCChhccEEEec
Confidence 34555566 46799999999999988775 32 22222 45677777 44 444889999875
No 466
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.24 E-value=9e-07 Score=84.63 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=43.2
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.+++++ +.+.+|++++|+|+||+|||||+++|++... ++.| +.+.|+.
T Consensus 152 ~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~---~d~~vi~~iGer 200 (441)
T PRK09099 152 RIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ---CDVNVIALIGER 200 (441)
T ss_pred eeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEEEEEccC
Confidence 389999 9999999999999999999999999999988 8888 5666754
No 467
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.21 E-value=9.7e-07 Score=84.30 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=41.3
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
+++++ |.+.+|++++|+|+||+|||||+++|++... ++.| +...|.
T Consensus 135 ~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~vi~~iG~ 181 (422)
T TIGR02546 135 AIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS---ADVNVIALIGE 181 (422)
T ss_pred eehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEcc
Confidence 89999 9999999999999999999999999999998 8888 445433
No 468
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.20 E-value=9.8e-07 Score=74.97 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=24.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|++++|+||||||||||+++|++.+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999999876
No 469
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.17 E-value=1.3e-06 Score=83.82 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=41.2
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
.+++++ |.+.+|++++|+|+||+|||||+++|++... ++.+ +...|.
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~vi~~iG~ 199 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE---ADVNVIALIGE 199 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCEEEEEEEee
Confidence 389999 9999999999999999999999999999988 8877 444444
No 470
>PRK05922 type III secretion system ATPase; Validated
Probab=98.17 E-value=1.5e-06 Score=82.77 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=40.1
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
.+++.+ +.+.+|++++|+|+||+|||||+++|++..+ ++.| +...|.
T Consensus 146 r~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~---~d~gvi~liGe 193 (434)
T PRK05922 146 KAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK---STINVIALIGE 193 (434)
T ss_pred eeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCC---CCceEEEEeCC
Confidence 377765 9999999999999999999999999999988 8888 434443
No 471
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.15 E-value=1.5e-06 Score=83.94 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=33.4
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++++.++.+.+|.+++++||||+||||++..|++.+.
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH
Confidence 5667777888999999999999999999999999886
No 472
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.14 E-value=1.8e-06 Score=82.15 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=43.6
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
.+++++ +.+.+|++++|+|+||+|||||+++|++... ++.| +...|+..
T Consensus 126 ~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~---~~~gvi~~~Ger~ 175 (413)
T TIGR03497 126 KAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK---ADINVIALIGERG 175 (413)
T ss_pred eeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEEEEEccch
Confidence 389999 9999999999999999999999999999988 8888 55677653
No 473
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.14 E-value=1.6e-06 Score=82.58 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=41.5
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
+++ .+|.+.+|++++|+|+||+|||||+++|+++.. |+.| +...|+.
T Consensus 130 aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer 177 (418)
T TIGR03498 130 VID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGER 177 (418)
T ss_pred EEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeee
Confidence 665 699999999999999999999999999999998 8888 5556653
No 474
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.13 E-value=2.6e-06 Score=82.96 Aligned_cols=59 Identities=22% Similarity=0.338 Sum_probs=48.7
Q ss_pred CchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 82 ~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
+++--+|+.. +++.+++.+..|..+.|+||||+|||||++.|.++++ |.+| +.+.+..+
T Consensus 190 d~~dv~Gq~~----~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp---~~~~~~~le~~~i 249 (499)
T TIGR00368 190 DLKDIKGQQH----AKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILP---PLTNEEAIETARI 249 (499)
T ss_pred CHHHhcCcHH----HHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccC---CCCCcEEEecccc
Confidence 3444455555 7889999999999999999999999999999999999 8888 66665543
No 475
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.13 E-value=1.7e-06 Score=75.00 Aligned_cols=71 Identities=21% Similarity=0.352 Sum_probs=44.3
Q ss_pred eEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhcCCCcHHHHHHHHHhcCccchhhhcccCCCCCEE
Q 023106 202 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 281 (287)
Q Consensus 202 Rv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~i 281 (287)
.+.+.+..+|+ . ..+...++.+++|+.+.+....|+..|. +...+.+..+.. ...+....+ ..||++
T Consensus 116 ~vvv~e~pLL~-e----~~~~~~~d~ii~V~a~~e~~~~Rl~~R~---~~s~e~~~~Ri~-~q~~~~~~~----~~ad~v 182 (208)
T PRK14731 116 RILVKEAAILF-E----SGGDAGLDFIVVVAADTELRLERAVQRG---MGSREEIRRRIA-AQWPQEKLI----ERADYV 182 (208)
T ss_pred CEEEEEeeeee-e----cCchhcCCeEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHH-HcCChHHHH----HhCCEE
Confidence 45666666443 2 2234456778899999999988887652 335555555554 344444443 358999
Q ss_pred EeCC
Q 023106 282 IKSI 285 (287)
Q Consensus 282 i~~~ 285 (287)
|.|.
T Consensus 183 I~N~ 186 (208)
T PRK14731 183 IYNN 186 (208)
T ss_pred EECC
Confidence 8864
No 476
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.09 E-value=2.6e-06 Score=73.18 Aligned_cols=28 Identities=39% Similarity=0.582 Sum_probs=26.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++|++++|+||+|||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999864
No 477
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.09 E-value=3.8e-06 Score=70.63 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=24.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|++++|+||||||||||++.|++.+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999999876
No 478
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.09 E-value=2.4e-06 Score=81.69 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=42.6
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc---c-eeeCCCCHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---A-SSFDSQDPKE 149 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~---G-i~~~g~~~~~ 149 (287)
+++.+ |.+.+|++++|+|+||+|||||+++|+++.. ++. | +-+.|.++..
T Consensus 165 aID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~---~d~iv~g~Igerg~ev~e 218 (455)
T PRK07960 165 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ---ADVIVVGLIGERGREVKD 218 (455)
T ss_pred eeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCC---CCEEEEEEEEECCeEHHH
Confidence 66555 9999999999999999999999999999988 774 5 7777877644
No 479
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.08 E-value=3e-06 Score=80.57 Aligned_cols=62 Identities=21% Similarity=0.262 Sum_probs=48.4
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
++-..++..|.. ...+++.+ |.+.+|++++|+|+||+|||||+++|++... ++.+ +...|+.
T Consensus 112 ~~R~~~~~~~~t---Gi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~---~~~~vi~~iGer 174 (411)
T TIGR03496 112 LKRAPIDEPLDV---GVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE---ADVVVVGLIGER 174 (411)
T ss_pred HhccCcceEeee---eEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEEecC
Confidence 444555655642 12388888 9999999999999999999999999999988 8877 4455554
No 480
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.08 E-value=1.8e-05 Score=68.02 Aligned_cols=24 Identities=46% Similarity=0.708 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.|+||+||||||+++.|++.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 688999999999999999988886
No 481
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.08 E-value=2.8e-06 Score=81.04 Aligned_cols=63 Identities=16% Similarity=0.316 Sum_probs=51.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.++.+.+++.|... ..+++.+ |.+.+|++++|+|+||+|||||+++|++... ++.| +.+.|+.
T Consensus 130 ~~~r~~i~~~l~TG---iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGer 193 (432)
T PRK06793 130 AFEREEITDVFETG---IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGER 193 (432)
T ss_pred chheechhhccCCC---CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCC
Confidence 46677788777532 2378774 9999999999999999999999999999998 8888 5566654
No 482
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.06 E-value=3.1e-06 Score=71.58 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=29.1
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++++++++.+| +.+|+||||+||||++.+|.-.+.
T Consensus 9 ~~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 9 SFKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp TEEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 346677777676 999999999999999999988886
No 483
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.06 E-value=4.8e-05 Score=61.23 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=45.3
Q ss_pred cCCeEEEEcChHHHHHHHHHHHhc--CCCcHHHHHHHHHhcCccchh-hhcccC-CCCCEEEeCC
Q 023106 225 FDEKWFIEVDLDTAMQRVLKRHIS--TGKPPDVAKWRIEYNDRPNAE-LIMKSK-KNADLVIKSI 285 (287)
Q Consensus 225 ~~~~i~vtHd~~~~~~rvigr~i~--~G~~~~~~~~~~~~~~~~~~~-~i~~~~-~~ad~ii~~~ 285 (287)
.+..|+++.+++....|++.|... .|.+.+-+...+...+.+... |+.++. ...|++|+++
T Consensus 83 ~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dl~i~~~ 147 (147)
T cd02020 83 ADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKLAEDAIVIDTS 147 (147)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccCCCCcEEEeCc
Confidence 445689999999988888876654 366777777778888888755 777764 5668999863
No 484
>COG4240 Predicted kinase [General function prediction only]
Probab=98.05 E-value=0.00014 Score=63.38 Aligned_cols=84 Identities=37% Similarity=0.481 Sum_probs=57.7
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-Ccc-eeeCCCCHH------------HHhhhCCCCCCCChhHHHH
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKA-SSFDSQDPK------------EAHARRGAPWTFNPLLLLN 167 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-~~G-i~~~g~~~~------------~~~~~~~~~~~~~~~~~~t 167 (287)
++-.+.-|+||.||.|||||||.-.|-.++.+..- ..+ ..+|+.-.. .....+|.+..++.....+
T Consensus 45 qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlgln 124 (300)
T COG4240 45 QERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLN 124 (300)
T ss_pred hhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHH
Confidence 34556889999999999999999999888872210 112 345543111 0123467888888877789
Q ss_pred HHHHHhcCCc-eeeccCCc
Q 023106 168 CLKNLRNQGS-VYAPSFDH 185 (287)
Q Consensus 168 v~e~l~~~~~-~~~~~~~~ 185 (287)
|++.+.-+.. +..|.|++
T Consensus 125 VLnai~~g~~~V~lPrfDK 143 (300)
T COG4240 125 VLNAIARGGPTVPLPRFDK 143 (300)
T ss_pred HHHHHhcCCCCcccccccc
Confidence 9999887754 35677876
No 485
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.05 E-value=3.4e-06 Score=80.40 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=34.0
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++.+ |.+.+|++++|+|+||+|||||+++|++...
T Consensus 151 ~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~ 187 (444)
T PRK08972 151 RAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT 187 (444)
T ss_pred eeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence 377777 9999999999999999999999999999876
No 486
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.04 E-value=5.2e-06 Score=76.57 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=33.6
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.+|++++|+||||+||||++..|++.+. +..+ +.+.+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeEEEEecC
Confidence 5799999999999999999999999998 7766 6665554
No 487
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.04 E-value=3.6e-06 Score=80.31 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=41.3
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
+++++ +.+.+|++++|+|+||+|||||+++|++... ++.+ +...|+.
T Consensus 147 aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~---~~v~vi~~iGer 194 (434)
T PRK08472 147 SIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL---APIKVVALIGER 194 (434)
T ss_pred Hhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC---CCEEEEEeeCcc
Confidence 88999 9999999999999999999999999999887 7667 5556654
No 488
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.04 E-value=2.7e-06 Score=81.41 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=35.5
Q ss_pred cccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 94 ~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.+++++ |.+.+|++++|+|+||+|||||+++|+|+..
T Consensus 156 i~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 156 IRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred eeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3489999 9999999999999999999999999999877
No 489
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.01 E-value=4.1e-06 Score=80.09 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=39.2
Q ss_pred cccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC
Q 023106 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS 144 (287)
Q Consensus 94 ~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g 144 (287)
+.+++++ |.+.+|++++|+|+||+|||||+++|+++.+. .+.+ +.+.|
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~--~~~~vi~liG 200 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE--ADVNVIALIG 200 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc--CCceEEEEEC
Confidence 3488887 99999999999999999999999999998850 2345 45544
No 490
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.00 E-value=8.6e-06 Score=69.89 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=34.8
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc-c-eeeCCCCHHH
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-A-SSFDSQDPKE 149 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~-G-i~~~g~~~~~ 149 (287)
++|.+++|+|+||||||||++.|++.+. +.. | +.++|.++..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~---~~~~~~~~ld~d~~~~ 65 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH---ELGVSTYLLDGDNVRH 65 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH---hCCCCEEEEcCEeHHh
Confidence 5799999999999999999999999886 543 4 6788876643
No 491
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.99 E-value=4.2e-06 Score=70.31 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=24.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|.+++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 68999999999999999999999765
No 492
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.98 E-value=5.5e-06 Score=69.97 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=24.1
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|++.. -|+.|+|.||+|||||+..|+-...
T Consensus 33 LeF~a-pIT~i~GENGsGKSTLLEaiA~~~~ 62 (233)
T COG3910 33 LEFRA-PITFITGENGSGKSTLLEAIAAGMG 62 (233)
T ss_pred ccccC-ceEEEEcCCCccHHHHHHHHHhhcc
Confidence 44444 4888999999999999999986654
No 493
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=5.3e-06 Score=83.90 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=34.0
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++++.++.+.+|++++++||||+||||++..|++.+.
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 6778888888999999999999999999999999885
No 494
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.96 E-value=1.9e-05 Score=84.48 Aligned_cols=43 Identities=26% Similarity=0.439 Sum_probs=34.4
Q ss_pred cccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC
Q 023106 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS 144 (287)
Q Consensus 100 vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g 144 (287)
+++....+.++||+|++|+|||||++.+.+.+.. ...| +.+++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeec
Confidence 4677889999999999999999999999776651 3356 66655
No 495
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.94 E-value=7.6e-06 Score=78.13 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=37.2
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
.+++++ +.+.+|++++|+|+||+|||||+++|++... ++--
T Consensus 151 ~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~---~dv~ 191 (439)
T PRK06936 151 RVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAE---VDVT 191 (439)
T ss_pred ceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCC---CCEE
Confidence 389999 9999999999999999999999999999887 6543
No 496
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=9.2e-06 Score=77.36 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=26.2
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+.+|++++|+||||+||||+++.|++..
T Consensus 187 ~~~~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 187 IIEQGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34789999999999999999999999964
No 497
>PRK06820 type III secretion system ATPase; Validated
Probab=97.91 E-value=8.5e-06 Score=77.93 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=37.8
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
.+++.+ +.+.+|++++|+|+||+|||||+++|++... ++.+
T Consensus 152 ~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~---~dv~ 192 (440)
T PRK06820 152 RAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSA---ADVM 192 (440)
T ss_pred ceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCC---CCEE
Confidence 389999 9999999999999999999999999999887 7765
No 498
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.89 E-value=7.8e-06 Score=79.66 Aligned_cols=43 Identities=23% Similarity=0.429 Sum_probs=36.2
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
+++|+-+.+ +|.+++|.||+||||||+.+.|+..+.-.+.+.|
T Consensus 274 LIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g 316 (512)
T PRK13477 274 LIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTG 316 (512)
T ss_pred EEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCC
Confidence 899999988 8899999999999999999999977642224445
No 499
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.89 E-value=2.1e-05 Score=65.88 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=33.0
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-e-eeCCCCH
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQDP 147 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i-~~~g~~~ 147 (287)
++|++++|+|++||||||+.+.|++.+. +..+ + ++++..+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~---~~g~~v~~id~D~~ 43 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR---EAGYPVEVLDGDAV 43 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEcCccH
Confidence 4799999999999999999999999997 6554 4 4666544
No 500
>PRK06762 hypothetical protein; Provisional
Probab=97.88 E-value=0.00032 Score=58.05 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.+++|.|++||||||+.+.|+..+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998774
Done!