Query 023106
Match_columns 287
No_of_seqs 420 out of 2077
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 16:28:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 100.0 1.5E-35 5.2E-40 274.3 -3.6 174 77-257 4-228 (359)
2 3rlf_A Maltose/maltodextrin im 100.0 7.9E-36 2.7E-40 278.0 -7.0 175 75-256 1-222 (381)
3 3tui_C Methionine import ATP-b 100.0 9.5E-35 3.3E-39 269.2 -3.1 179 75-256 22-252 (366)
4 1v43_A Sugar-binding transport 100.0 2.9E-34 9.9E-39 267.3 -2.3 176 75-257 9-231 (372)
5 2yyz_A Sugar ABC transporter, 100.0 1.5E-34 5.2E-39 268.0 -4.8 176 75-257 1-223 (359)
6 2it1_A 362AA long hypothetical 100.0 2.2E-34 7.5E-39 267.2 -6.1 176 75-257 1-223 (362)
7 1g29_1 MALK, maltose transport 100.0 2E-34 6.9E-39 268.6 -7.2 176 75-257 1-229 (372)
8 1z47_A CYSA, putative ABC-tran 100.0 4.9E-34 1.7E-38 264.1 -6.1 176 75-257 12-235 (355)
9 4g1u_C Hemin import ATP-bindin 100.0 1.8E-33 6.1E-38 251.4 -2.7 176 75-257 9-237 (266)
10 3gfo_A Cobalt import ATP-bindi 100.0 3.5E-34 1.2E-38 257.0 -7.4 176 76-257 6-233 (275)
11 1oxx_K GLCV, glucose, ABC tran 100.0 7.6E-34 2.6E-38 263.1 -6.7 178 75-257 1-230 (353)
12 1g6h_A High-affinity branched- 100.0 2.3E-33 7.7E-38 249.5 -4.8 173 75-254 5-239 (257)
13 1ji0_A ABC transporter; ATP bi 100.0 5.5E-33 1.9E-37 244.7 -2.4 174 76-256 5-227 (240)
14 2olj_A Amino acid ABC transpor 100.0 2.5E-33 8.7E-38 249.9 -4.7 174 76-256 23-247 (263)
15 1vpl_A ABC transporter, ATP-bi 100.0 1.3E-33 4.5E-38 250.9 -7.2 176 74-256 12-234 (256)
16 3tif_A Uncharacterized ABC tra 100.0 1.5E-33 5.1E-38 247.5 -7.2 176 77-255 1-232 (235)
17 1b0u_A Histidine permease; ABC 100.0 1.3E-33 4.4E-38 251.8 -8.0 173 77-256 6-241 (262)
18 3d31_A Sulfate/molybdate ABC t 100.0 3.5E-33 1.2E-37 258.0 -6.7 172 77-256 1-216 (348)
19 2ihy_A ABC transporter, ATP-bi 100.0 1.7E-32 5.7E-37 246.7 -3.9 174 76-256 20-251 (279)
20 2onk_A Molybdate/tungstate ABC 100.0 2.8E-32 9.7E-37 240.1 -3.7 170 77-256 1-215 (240)
21 2pcj_A ABC transporter, lipopr 100.0 4E-32 1.4E-36 236.8 -3.5 156 76-238 3-203 (224)
22 2ixe_A Antigen peptide transpo 100.0 4.3E-32 1.5E-36 243.1 -3.6 174 77-257 16-245 (271)
23 1mv5_A LMRA, multidrug resista 100.0 1.8E-31 6.1E-36 235.4 -0.4 174 77-257 1-226 (243)
24 3nh6_A ATP-binding cassette SU 100.0 7.6E-32 2.6E-36 245.1 -4.9 176 77-258 53-278 (306)
25 2yz2_A Putative ABC transporte 100.0 7.2E-32 2.5E-36 241.0 -5.3 178 77-257 2-227 (266)
26 2d2e_A SUFC protein; ABC-ATPas 100.0 4.4E-31 1.5E-35 233.8 -0.3 172 75-253 1-229 (250)
27 2ff7_A Alpha-hemolysin translo 100.0 1.6E-31 5.4E-36 236.3 -6.0 173 77-256 7-231 (247)
28 1sgw_A Putative ABC transporte 100.0 4.5E-31 1.5E-35 228.6 -3.7 154 76-240 9-198 (214)
29 2cbz_A Multidrug resistance-as 100.0 1E-31 3.5E-36 236.1 -8.0 166 75-257 1-217 (237)
30 2zu0_C Probable ATP-dependent 100.0 2.8E-31 9.7E-36 237.3 -5.8 175 75-256 18-253 (267)
31 2nq2_C Hypothetical ABC transp 100.0 1E-30 3.5E-35 231.9 -2.5 162 77-256 4-216 (253)
32 2ghi_A Transport protein; mult 99.9 1.5E-30 5.3E-35 231.6 -4.4 176 77-257 17-242 (260)
33 2pze_A Cystic fibrosis transme 99.9 4.3E-30 1.5E-34 224.7 -2.1 163 77-256 6-217 (229)
34 3gd7_A Fusion complex of cysti 99.9 5.9E-31 2E-35 246.4 -8.1 174 76-257 18-242 (390)
35 2qi9_C Vitamin B12 import ATP- 99.9 1.9E-30 6.4E-35 229.7 -5.5 168 77-256 4-221 (249)
36 3b5x_A Lipid A export ATP-bind 99.9 3E-28 1E-32 239.5 4.0 176 77-257 341-567 (582)
37 2pjz_A Hypothetical protein ST 99.9 3.6E-29 1.2E-33 223.1 -3.2 171 77-256 1-214 (263)
38 3qf4_A ABC transporter, ATP-bi 99.9 1.2E-28 4.2E-33 242.5 -4.5 177 77-258 341-567 (587)
39 3qf4_B Uncharacterized ABC tra 99.9 1.7E-28 5.9E-33 241.9 -4.7 175 77-257 354-578 (598)
40 3b60_A Lipid A export ATP-bind 99.9 3.4E-28 1.2E-32 239.2 -4.2 176 77-257 341-567 (582)
41 4a82_A Cystic fibrosis transme 99.9 1.6E-28 5.6E-33 241.2 -6.5 176 77-257 339-564 (578)
42 2yl4_A ATP-binding cassette SU 99.9 3.7E-28 1.3E-32 239.4 -4.2 176 78-257 342-570 (595)
43 2bbs_A Cystic fibrosis transme 99.9 1.4E-27 4.9E-32 215.6 -3.4 162 76-257 39-247 (290)
44 3aez_A Pantothenate kinase; tr 99.9 2.8E-25 9.6E-30 202.6 8.5 190 77-286 43-300 (312)
45 3g5u_A MCG1178, multidrug resi 99.9 2.8E-26 9.6E-31 242.7 -4.3 177 77-257 1030-1258(1284)
46 4f4c_A Multidrug resistance pr 99.9 1.3E-26 4.5E-31 245.8 -7.0 178 77-258 1076-1305(1321)
47 3g5u_A MCG1178, multidrug resi 99.9 4.1E-26 1.4E-30 241.5 -4.7 177 77-257 387-613 (1284)
48 3ozx_A RNAse L inhibitor; ATP 99.9 6.6E-25 2.3E-29 213.5 0.8 151 76-240 268-451 (538)
49 1yqt_A RNAse L inhibitor; ATP- 99.9 2.4E-25 8.3E-30 216.8 -3.0 165 75-257 285-493 (538)
50 3bk7_A ABC transporter ATP-bin 99.9 2.1E-25 7.1E-30 219.8 -3.8 163 76-257 356-563 (607)
51 4f4c_A Multidrug resistance pr 99.9 9.9E-26 3.4E-30 239.1 -6.8 177 77-257 415-641 (1321)
52 3c8u_A Fructokinase; YP_612366 99.9 4.4E-23 1.5E-27 176.9 9.5 172 104-284 19-207 (208)
53 3bk7_A ABC transporter ATP-bin 99.9 6.3E-24 2.2E-28 209.2 3.2 158 76-240 82-293 (607)
54 1yqt_A RNAse L inhibitor; ATP- 99.9 9E-24 3.1E-28 205.7 2.2 155 78-240 21-223 (538)
55 2iw3_A Elongation factor 3A; a 99.9 2.7E-24 9.1E-29 219.8 -5.9 65 75-144 669-734 (986)
56 3j16_B RLI1P; ribosome recycli 99.8 1.3E-22 4.4E-27 199.7 2.1 166 81-258 350-560 (608)
57 3ux8_A Excinuclease ABC, A sub 99.8 4.1E-23 1.4E-27 206.1 -3.3 158 96-256 33-297 (670)
58 2jeo_A Uridine-cytidine kinase 99.8 5.6E-20 1.9E-24 161.5 14.7 177 96-284 14-214 (245)
59 3j16_B RLI1P; ribosome recycli 99.8 3.7E-21 1.3E-25 189.4 6.1 151 82-240 82-286 (608)
60 2iw3_A Elongation factor 3A; a 99.8 2.4E-22 8.1E-27 205.5 -3.1 163 77-257 435-635 (986)
61 3ozx_A RNAse L inhibitor; ATP 99.8 7E-21 2.4E-25 185.2 2.4 152 81-240 3-202 (538)
62 1sq5_A Pantothenate kinase; P- 99.8 7.1E-20 2.4E-24 166.4 7.5 202 77-285 37-296 (308)
63 2npi_A Protein CLP1; CLP1-PCF1 99.8 1.2E-21 4.1E-26 187.2 -7.2 141 76-236 117-299 (460)
64 3ux8_A Excinuclease ABC, A sub 99.8 7.9E-21 2.7E-25 189.5 -2.0 69 188-256 537-639 (670)
65 3tqc_A Pantothenate kinase; bi 99.8 2.2E-19 7.6E-24 163.9 6.2 201 81-286 64-309 (321)
66 3b85_A Phosphate starvation-in 99.8 7.9E-21 2.7E-25 163.5 -4.1 138 85-240 8-163 (208)
67 4gp7_A Metallophosphoesterase; 99.7 4.8E-18 1.6E-22 141.3 5.2 115 99-240 1-164 (171)
68 2ga8_A Hypothetical 39.9 kDa p 99.7 1.7E-17 5.8E-22 152.6 8.3 137 151-287 181-353 (359)
69 3asz_A Uridine kinase; cytidin 99.7 4.1E-16 1.4E-20 133.0 13.4 166 104-286 3-188 (211)
70 4aby_A DNA repair protein RECN 99.7 5.7E-18 2E-22 159.1 1.5 36 96-132 50-85 (415)
71 2r6f_A Excinuclease ABC subuni 99.7 4.2E-18 1.4E-22 173.3 -0.0 44 76-128 628-671 (972)
72 2ygr_A Uvrabc system protein A 99.6 6.9E-18 2.3E-22 172.2 -1.1 44 76-128 646-689 (993)
73 2vf7_A UVRA2, excinuclease ABC 99.6 1.6E-17 5.5E-22 168.2 1.5 48 76-132 501-549 (842)
74 2pt7_A CAG-ALFA; ATPase, prote 99.6 2.6E-17 8.8E-22 151.0 0.9 138 80-261 151-307 (330)
75 3pih_A Uvrabc system protein A 99.6 1.2E-17 4.2E-22 170.4 -2.7 70 188-257 799-902 (916)
76 2dpy_A FLII, flagellum-specifi 99.6 3.5E-18 1.2E-22 162.3 -11.1 151 76-236 130-318 (438)
77 3sop_A Neuronal-specific septi 99.6 2.3E-17 8E-22 147.2 -5.3 126 109-238 4-153 (270)
78 2v9p_A Replication protein E1; 99.6 7.5E-16 2.6E-20 139.5 4.0 149 77-255 101-264 (305)
79 1znw_A Guanylate kinase, GMP k 99.6 2.8E-16 9.6E-21 134.3 0.8 133 96-240 11-193 (207)
80 1z6g_A Guanylate kinase; struc 99.6 2.3E-15 7.8E-20 129.9 6.3 63 96-165 12-79 (218)
81 3b9q_A Chloroplast SRP recepto 99.6 1.2E-15 4E-20 138.3 4.3 133 96-234 89-256 (302)
82 2obl_A ESCN; ATPase, hydrolase 99.5 2E-17 6.7E-22 152.7 -9.7 168 76-252 44-250 (347)
83 1ye8_A Protein THEP1, hypothet 99.5 1.4E-16 4.7E-21 133.7 -4.4 120 109-240 2-148 (178)
84 1htw_A HI0065; nucleotide-bind 99.5 3.1E-15 1.1E-19 123.1 3.4 63 78-148 8-71 (158)
85 1tf7_A KAIC; homohexamer, hexa 99.5 6E-16 2E-20 150.2 -1.7 151 77-238 12-188 (525)
86 1tq4_A IIGP1, interferon-induc 99.5 3.8E-17 1.3E-21 153.8 -12.1 49 96-147 38-107 (413)
87 2og2_A Putative signal recogni 99.5 9.1E-15 3.1E-19 135.3 3.4 131 98-234 148-313 (359)
88 1odf_A YGR205W, hypothetical 3 99.5 3.8E-13 1.3E-17 121.1 12.1 168 104-284 28-275 (290)
89 1e69_A Chromosome segregation 99.4 4.5E-14 1.5E-18 128.8 4.6 43 78-131 6-48 (322)
90 1s96_A Guanylate kinase, GMP k 99.4 6.5E-14 2.2E-18 121.1 4.0 121 102-243 11-148 (219)
91 2qnr_A Septin-2, protein NEDD5 99.4 3.1E-15 1.1E-19 135.4 -6.8 143 81-236 2-168 (301)
92 2ehv_A Hypothetical protein PH 99.4 7.6E-14 2.6E-18 121.2 1.8 62 76-146 5-69 (251)
93 2o8b_B DNA mismatch repair pro 99.4 2E-13 6.8E-18 141.3 3.9 134 77-240 750-917 (1022)
94 3qf7_A RAD50; ABC-ATPase, ATPa 99.4 2E-13 6.8E-18 126.7 3.4 36 96-132 13-48 (365)
95 1ewq_A DNA mismatch repair pro 99.3 1.2E-13 4E-18 139.2 0.0 113 95-238 567-701 (765)
96 1rj9_A FTSY, signal recognitio 99.3 9.6E-13 3.3E-17 119.2 5.6 126 106-237 101-260 (304)
97 3thx_B DNA mismatch repair pro 99.3 9.1E-14 3.1E-18 142.1 -2.5 120 95-239 661-800 (918)
98 3szr_A Interferon-induced GTP- 99.3 2E-13 7E-18 134.6 0.0 144 77-238 10-199 (608)
99 2qm8_A GTPase/ATPase; G protei 99.3 3.9E-13 1.3E-17 123.5 1.3 67 75-148 27-94 (337)
100 1rz3_A Hypothetical protein rb 99.3 7.7E-13 2.6E-17 112.3 2.4 165 103-285 18-200 (201)
101 1tf7_A KAIC; homohexamer, hexa 99.2 2.4E-12 8.1E-17 124.8 4.3 114 77-215 257-379 (525)
102 1cr0_A DNA primase/helicase; R 99.2 3.9E-12 1.3E-16 114.0 5.1 45 96-143 24-70 (296)
103 2gza_A Type IV secretion syste 99.2 2.3E-12 7.8E-17 119.4 3.5 62 79-145 137-211 (361)
104 1lw7_A Transcriptional regulat 99.2 1.8E-13 6E-18 126.9 -5.1 40 96-138 157-198 (365)
105 2i3b_A HCR-ntpase, human cance 99.2 1.2E-13 4.1E-18 116.8 -5.8 117 107-235 1-149 (189)
106 2bdt_A BH3686; alpha-beta prot 99.2 2.8E-12 9.5E-17 107.3 2.1 142 107-255 2-182 (189)
107 3thx_A DNA mismatch repair pro 99.2 2.9E-12 1E-16 131.3 2.6 36 95-130 650-685 (934)
108 1wb9_A DNA mismatch repair pro 99.2 1.3E-12 4.4E-17 132.2 -0.7 37 95-132 596-632 (800)
109 1zp6_A Hypothetical protein AT 99.2 2.3E-11 7.7E-16 101.6 5.7 111 103-219 5-138 (191)
110 3euj_A Chromosome partition pr 99.2 1.5E-11 5.1E-16 117.7 4.6 48 96-147 19-67 (483)
111 2eyu_A Twitching motility prot 99.2 7.2E-12 2.5E-16 111.0 2.0 58 77-147 5-64 (261)
112 2yhs_A FTSY, cell division pro 99.1 4.4E-11 1.5E-15 114.4 6.6 76 97-175 283-371 (503)
113 1nlf_A Regulatory protein REPA 99.1 1.9E-11 6.6E-16 108.7 3.6 124 103-239 26-185 (279)
114 3e70_C DPA, signal recognition 99.1 1.3E-11 4.6E-16 112.8 2.3 129 103-236 125-280 (328)
115 2qag_C Septin-7; cell cycle, c 99.1 1.2E-12 4.2E-17 123.4 -5.7 46 77-132 11-56 (418)
116 3jvv_A Twitching mobility prot 99.1 1.7E-11 5.7E-16 113.3 1.8 34 103-139 119-153 (356)
117 2w0m_A SSO2452; RECA, SSPF, un 99.1 3.4E-11 1.2E-15 102.9 2.9 47 96-145 11-59 (235)
118 1pui_A ENGB, probable GTP-bind 99.0 3.4E-11 1.2E-15 101.6 0.2 49 76-131 2-50 (210)
119 3nwj_A ATSK2; P loop, shikimat 99.0 5.8E-11 2E-15 104.6 1.2 53 76-132 16-73 (250)
120 1p9r_A General secretion pathw 99.0 1.4E-10 4.7E-15 109.4 2.9 62 77-147 143-205 (418)
121 2ewv_A Twitching motility prot 99.0 9.2E-11 3.1E-15 109.0 1.4 46 96-146 127-174 (372)
122 1in4_A RUVB, holliday junction 98.9 8.3E-12 2.8E-16 114.2 -7.0 67 77-147 18-93 (334)
123 1uj2_A Uridine-cytidine kinase 98.9 8.4E-09 2.9E-13 90.3 12.3 172 106-282 21-210 (252)
124 3lnc_A Guanylate kinase, GMP k 98.9 2.9E-10 9.8E-15 98.2 2.5 37 96-132 16-53 (231)
125 3qkt_A DNA double-strand break 98.9 3.4E-10 1.1E-14 103.8 2.9 49 189-237 243-316 (339)
126 1pzn_A RAD51, DNA repair and r 98.9 3.5E-11 1.2E-15 110.9 -4.3 106 96-215 119-239 (349)
127 1a7j_A Phosphoribulokinase; tr 98.9 9.4E-10 3.2E-14 98.8 4.8 179 106-286 4-216 (290)
128 2qag_B Septin-6, protein NEDD5 98.9 2.6E-10 9E-15 107.4 0.9 49 77-131 16-66 (427)
129 4a74_A DNA repair and recombin 98.9 8.1E-10 2.8E-14 94.4 3.9 49 78-132 2-50 (231)
130 3vaa_A Shikimate kinase, SK; s 98.9 2.6E-09 8.7E-14 90.1 6.5 38 95-132 13-50 (199)
131 2f1r_A Molybdopterin-guanine d 98.9 6.9E-10 2.4E-14 92.1 2.6 36 108-146 3-42 (171)
132 3tr0_A Guanylate kinase, GMP k 98.8 1.3E-09 4.3E-14 91.8 4.0 32 101-132 1-32 (205)
133 4e22_A Cytidylate kinase; P-lo 98.8 1.6E-09 5.4E-14 95.1 4.6 61 226-286 164-228 (252)
134 1qhl_A Protein (cell division 98.8 1.1E-10 3.9E-15 101.2 -2.8 56 77-147 9-65 (227)
135 2kjq_A DNAA-related protein; s 98.7 5.9E-09 2E-13 84.4 4.4 32 96-132 30-61 (149)
136 3uie_A Adenylyl-sulfate kinase 98.7 2.2E-09 7.5E-14 90.6 1.4 59 81-147 3-64 (200)
137 2oap_1 GSPE-2, type II secreti 98.7 2E-09 6.8E-14 103.9 0.9 47 96-145 249-296 (511)
138 3kta_A Chromosome segregation 98.7 1.3E-08 4.3E-13 84.2 5.5 38 98-139 18-55 (182)
139 1vma_A Cell division protein F 98.7 9.1E-09 3.1E-13 93.1 4.4 45 99-146 96-141 (306)
140 2rcn_A Probable GTPase ENGC; Y 98.6 3.6E-09 1.2E-13 97.6 -0.2 47 97-146 206-254 (358)
141 2j41_A Guanylate kinase; GMP, 98.6 1.8E-08 6.2E-13 84.6 3.7 35 102-139 1-35 (207)
142 3a00_A Guanylate kinase, GMP k 98.6 1.5E-08 5E-13 84.6 2.8 30 107-139 1-30 (186)
143 2x8a_A Nuclear valosin-contain 98.6 2.4E-08 8.2E-13 88.8 4.1 45 96-147 35-80 (274)
144 1u0l_A Probable GTPase ENGC; p 98.6 9.6E-09 3.3E-13 92.5 1.3 43 102-147 164-210 (301)
145 1lvg_A Guanylate kinase, GMP k 98.6 2.2E-08 7.7E-13 84.5 3.3 28 105-132 2-29 (198)
146 1ixz_A ATP-dependent metallopr 98.5 1.9E-08 6.6E-13 87.7 2.4 58 78-146 26-84 (254)
147 2p67_A LAO/AO transport system 98.5 1.6E-08 5.4E-13 92.7 1.6 58 75-139 28-85 (341)
148 1cke_A CK, MSSA, protein (cyti 98.5 1.4E-09 5E-14 93.0 -5.2 33 107-139 5-37 (227)
149 1iy2_A ATP-dependent metallopr 98.5 2.3E-08 8E-13 88.5 2.3 58 78-146 50-108 (278)
150 3k1j_A LON protease, ATP-depen 98.5 1.5E-08 5.1E-13 99.7 0.9 61 78-145 35-97 (604)
151 1t9h_A YLOQ, probable GTPase E 98.5 1.4E-08 4.7E-13 91.9 -0.5 42 102-146 168-213 (307)
152 3ec2_A DNA replication protein 98.5 4.7E-08 1.6E-12 80.7 2.7 36 101-139 32-67 (180)
153 2yv5_A YJEQ protein; hydrolase 98.5 4.8E-08 1.6E-12 88.1 2.9 42 102-147 160-205 (302)
154 1sxj_E Activator 1 40 kDa subu 98.5 2.3E-07 7.8E-12 84.5 7.2 36 109-147 38-75 (354)
155 1kgd_A CASK, peripheral plasma 98.4 1.1E-07 3.8E-12 78.8 3.8 27 106-132 4-30 (180)
156 1ls1_A Signal recognition part 98.4 1.1E-07 3.8E-12 85.4 3.7 59 78-147 77-136 (295)
157 4eun_A Thermoresistant glucoki 98.4 1.5E-07 5.1E-12 79.2 4.0 148 101-285 23-177 (200)
158 1zu4_A FTSY; GTPase, signal re 98.4 1.8E-07 6.2E-12 85.0 4.8 47 98-147 96-143 (320)
159 2o5v_A DNA replication and rep 98.4 9.6E-08 3.3E-12 88.2 2.9 35 96-131 16-50 (359)
160 2bbw_A Adenylate kinase 4, AK4 98.4 3.5E-08 1.2E-12 85.9 -0.1 36 106-144 26-65 (246)
161 1svm_A Large T antigen; AAA+ f 98.3 1.5E-07 5.2E-12 87.4 3.1 37 96-132 158-194 (377)
162 1w1w_A Structural maintenance 98.3 2.7E-07 9.3E-12 86.9 4.1 46 77-132 6-51 (430)
163 1n0w_A DNA repair protein RAD5 98.3 3.5E-07 1.2E-11 78.5 4.1 41 103-146 20-68 (243)
164 3tau_A Guanylate kinase, GMP k 98.3 3.3E-07 1.1E-11 77.7 3.8 28 105-132 6-33 (208)
165 3t61_A Gluconokinase; PSI-biol 98.3 7.4E-06 2.5E-10 68.6 11.6 26 107-132 18-43 (202)
166 3cr8_A Sulfate adenylyltranfer 98.3 3.9E-07 1.3E-11 88.6 3.9 43 103-148 365-410 (552)
167 3m6a_A ATP-dependent protease 98.2 3.6E-07 1.2E-11 88.8 3.1 59 78-144 84-143 (543)
168 1nij_A Hypothetical protein YJ 98.2 3.2E-07 1.1E-11 83.1 2.5 39 108-146 5-49 (318)
169 2vp4_A Deoxynucleoside kinase; 98.2 3.5E-07 1.2E-11 78.8 2.6 41 100-147 13-54 (230)
170 1knq_A Gluconate kinase; ALFA/ 98.2 7.3E-07 2.5E-11 73.0 4.3 27 105-131 6-32 (175)
171 1kag_A SKI, shikimate kinase I 98.2 7.2E-07 2.5E-11 72.7 3.3 27 106-132 3-29 (173)
172 2cvh_A DNA repair and recombin 98.2 7.6E-07 2.6E-11 75.2 3.3 45 96-145 8-54 (220)
173 1udx_A The GTP-binding protein 98.2 3.1E-07 1.1E-11 86.4 0.5 34 98-131 148-181 (416)
174 3ney_A 55 kDa erythrocyte memb 98.1 1.2E-06 4.1E-11 74.1 4.0 31 102-132 14-44 (197)
175 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 1.2E-06 4.2E-11 81.6 4.3 40 103-145 16-68 (392)
176 1f2t_A RAD50 ABC-ATPase; DNA d 98.1 2.9E-06 9.9E-11 68.3 5.2 31 101-132 18-48 (149)
177 3ice_A Transcription terminati 98.1 9.7E-07 3.3E-11 81.9 2.6 53 77-132 133-199 (422)
178 2qt1_A Nicotinamide riboside k 98.1 1.6E-06 5.4E-11 73.0 3.2 32 100-131 14-45 (207)
179 3pih_A Uvrabc system protein A 98.1 2E-07 6.9E-12 95.3 -3.1 70 188-257 458-560 (916)
180 2px0_A Flagellar biosynthesis 98.0 2.3E-06 7.8E-11 76.9 3.7 39 105-146 103-143 (296)
181 1j8m_F SRP54, signal recogniti 98.0 2.1E-06 7.1E-11 77.2 3.4 57 80-146 77-135 (297)
182 4eaq_A DTMP kinase, thymidylat 98.0 4.3E-06 1.5E-10 72.1 5.3 36 97-132 13-51 (229)
183 1oix_A RAS-related protein RAB 98.0 2.4E-06 8.3E-11 71.0 3.4 25 108-132 30-54 (191)
184 2dhr_A FTSH; AAA+ protein, hex 98.0 1.9E-06 6.6E-11 82.7 3.1 58 78-146 41-99 (499)
185 2ffh_A Protein (FFH); SRP54, s 98.0 3.7E-06 1.3E-10 79.2 4.6 56 80-146 79-135 (425)
186 1f2t_B RAD50 ABC-ATPase; DNA d 98.0 6.5E-07 2.2E-11 72.3 -0.7 48 189-236 52-124 (148)
187 2pez_A Bifunctional 3'-phospho 98.0 4.5E-06 1.5E-10 68.6 3.8 28 105-132 3-30 (179)
188 4ad8_A DNA repair protein RECN 97.9 2.1E-06 7.2E-11 82.8 1.8 42 78-131 43-84 (517)
189 1sxj_C Activator 1 40 kDa subu 97.9 2.2E-06 7.5E-11 77.9 1.7 48 81-132 22-71 (340)
190 2www_A Methylmalonic aciduria 97.9 5E-06 1.7E-10 76.3 4.1 38 105-145 72-110 (349)
191 2ygr_A Uvrabc system protein A 97.9 4.7E-07 1.6E-11 92.8 -3.4 70 188-257 515-617 (993)
192 2dr3_A UPF0273 protein PH0284; 97.9 6.8E-06 2.3E-10 70.4 3.7 48 96-146 11-61 (247)
193 2f9l_A RAB11B, member RAS onco 97.9 6.7E-06 2.3E-10 68.5 3.3 24 108-131 6-29 (199)
194 2yvu_A Probable adenylyl-sulfa 97.9 1.2E-05 4.1E-10 66.4 4.8 41 101-144 7-49 (186)
195 2r6f_A Excinuclease ABC subuni 97.9 4.4E-07 1.5E-11 92.8 -5.0 69 188-256 498-599 (972)
196 1m7g_A Adenylylsulfate kinase; 97.8 6E-06 2.1E-10 69.8 2.9 35 102-139 20-54 (211)
197 1y63_A LMAJ004144AAA protein; 97.8 1.1E-05 3.8E-10 66.8 4.2 32 99-130 2-33 (184)
198 3t34_A Dynamin-related protein 97.8 7.2E-06 2.5E-10 75.3 3.0 46 80-129 11-56 (360)
199 3qks_A DNA double-strand break 97.8 1.8E-05 6.3E-10 66.8 5.2 32 100-132 17-48 (203)
200 1jjv_A Dephospho-COA kinase; P 97.8 8.7E-06 3E-10 68.3 3.0 57 222-286 121-177 (206)
201 2if2_A Dephospho-COA kinase; a 97.8 1.2E-05 4E-10 67.3 3.2 21 109-129 3-23 (204)
202 2qor_A Guanylate kinase; phosp 97.8 1.3E-05 4.5E-10 67.4 3.4 30 103-132 8-37 (204)
203 2qag_A Septin-2, protein NEDD5 97.7 7E-06 2.4E-10 75.7 1.7 45 77-131 17-61 (361)
204 3lda_A DNA repair protein RAD5 97.7 1.2E-05 4.2E-10 75.1 3.1 41 103-146 174-222 (400)
205 2p5t_B PEZT; postsegregational 97.7 1.1E-05 3.7E-10 70.4 2.4 45 96-146 22-67 (253)
206 3cm0_A Adenylate kinase; ATP-b 97.6 3.2E-05 1.1E-09 63.5 4.0 28 105-132 2-29 (186)
207 3hr8_A Protein RECA; alpha and 97.6 3.1E-05 1.1E-09 71.2 3.9 41 103-146 57-99 (356)
208 1q3t_A Cytidylate kinase; nucl 97.6 4.2E-05 1.4E-09 65.8 4.1 61 225-285 153-217 (236)
209 3kta_B Chromosome segregation 97.6 1.8E-05 6.1E-10 65.5 1.3 51 188-238 58-130 (173)
210 3kb2_A SPBC2 prophage-derived 97.5 5.3E-05 1.8E-09 61.0 3.8 24 109-132 3-26 (173)
211 2gj8_A MNME, tRNA modification 97.5 3.9E-05 1.3E-09 62.4 3.0 26 106-131 3-28 (172)
212 1ega_A Protein (GTP-binding pr 97.5 3.6E-05 1.2E-09 69.0 3.0 28 104-131 5-32 (301)
213 1f6b_A SAR1; gtpases, N-termin 97.5 1.9E-05 6.5E-10 65.8 0.5 33 96-129 15-47 (198)
214 1lv7_A FTSH; alpha/beta domain 97.5 7.3E-05 2.5E-09 64.8 4.0 35 96-132 36-70 (257)
215 1m2o_B GTP-binding protein SAR 97.5 6E-05 2.1E-09 62.2 3.3 34 96-130 13-46 (190)
216 2vf7_A UVRA2, excinuclease ABC 97.5 2E-05 6.9E-10 80.0 0.4 68 189-256 374-474 (842)
217 1np6_A Molybdopterin-guanine d 97.4 8.9E-05 3E-09 61.3 3.7 25 108-132 7-31 (174)
218 1qhx_A CPT, protein (chloramph 97.4 9.7E-05 3.3E-09 60.1 3.9 26 107-132 3-28 (178)
219 4ad8_A DNA repair protein RECN 97.4 3.5E-05 1.2E-09 74.2 1.1 52 189-240 391-463 (517)
220 2rhm_A Putative kinase; P-loop 97.4 0.00012 4.1E-09 60.2 4.1 28 105-132 3-30 (193)
221 1vht_A Dephospho-COA kinase; s 97.4 0.00012 4.1E-09 61.8 4.1 24 106-129 3-26 (218)
222 1kht_A Adenylate kinase; phosp 97.4 0.00011 3.8E-09 60.1 3.8 26 107-132 3-28 (192)
223 4fcw_A Chaperone protein CLPB; 97.4 3.8E-05 1.3E-09 68.2 0.9 30 107-139 47-76 (311)
224 2wji_A Ferrous iron transport 97.4 7.9E-05 2.7E-09 59.9 2.8 24 108-131 4-27 (165)
225 2jaq_A Deoxyguanosine kinase; 97.4 0.00012 4E-09 60.7 3.9 24 109-132 2-25 (205)
226 2ze6_A Isopentenyl transferase 97.3 0.00012 4.2E-09 63.8 4.1 25 108-132 2-26 (253)
227 2ce7_A Cell division protein F 97.3 5.6E-05 1.9E-09 72.2 1.9 47 80-132 28-74 (476)
228 2ohf_A Protein OLA1, GTP-bindi 97.3 0.0001 3.5E-09 68.7 3.6 28 103-130 18-45 (396)
229 1via_A Shikimate kinase; struc 97.3 0.00011 3.7E-09 59.9 3.3 24 109-132 6-29 (175)
230 3iij_A Coilin-interacting nucl 97.3 0.00013 4.4E-09 59.7 3.7 29 104-132 8-36 (180)
231 3r20_A Cytidylate kinase; stru 97.3 0.00013 4.4E-09 63.2 3.8 61 226-286 147-211 (233)
232 3auy_A DNA double-strand break 97.3 0.00014 4.7E-09 67.0 4.3 48 190-237 276-348 (371)
233 3lw7_A Adenylate kinase relate 97.3 0.00013 4.4E-09 58.5 3.2 19 109-127 3-21 (179)
234 2plr_A DTMP kinase, probable t 97.3 0.00019 6.6E-09 59.7 4.3 27 106-132 3-29 (213)
235 1uf9_A TT1252 protein; P-loop, 97.3 0.00016 5.6E-09 59.8 3.7 25 106-130 7-31 (203)
236 2r6a_A DNAB helicase, replicat 97.3 9.4E-05 3.2E-09 70.0 2.4 37 96-132 192-228 (454)
237 1tev_A UMP-CMP kinase; ploop, 97.3 0.0002 7E-09 58.7 4.2 27 106-132 2-28 (196)
238 4i1u_A Dephospho-COA kinase; s 97.2 0.00022 7.6E-09 60.7 4.4 58 220-285 127-184 (210)
239 2v54_A DTMP kinase, thymidylat 97.2 0.00018 6.3E-09 59.7 3.8 26 106-131 3-28 (204)
240 2c95_A Adenylate kinase 1; tra 97.2 0.0002 6.7E-09 59.0 3.9 28 105-132 7-34 (196)
241 1gtv_A TMK, thymidylate kinase 97.2 6.9E-05 2.4E-09 62.8 1.1 24 109-132 2-25 (214)
242 2bwj_A Adenylate kinase 5; pho 97.2 9.4E-05 3.2E-09 61.1 1.9 30 103-132 8-37 (199)
243 2wjg_A FEOB, ferrous iron tran 97.2 0.00015 5E-09 59.1 3.0 23 108-130 8-30 (188)
244 3ake_A Cytidylate kinase; CMP 97.2 0.0002 6.9E-09 59.5 3.8 24 109-132 4-27 (208)
245 2dy1_A Elongation factor G; tr 97.2 0.00019 6.4E-09 71.3 4.1 32 101-132 3-34 (665)
246 3trf_A Shikimate kinase, SK; a 97.2 0.00022 7.7E-09 58.3 3.9 26 107-132 5-30 (185)
247 2wwf_A Thymidilate kinase, put 97.2 0.00022 7.5E-09 59.6 3.8 28 105-132 8-35 (212)
248 2zr9_A Protein RECA, recombina 97.2 0.00018 6E-09 66.0 3.4 30 103-132 57-86 (349)
249 1xjc_A MOBB protein homolog; s 97.2 0.00024 8.2E-09 58.4 3.7 25 108-132 5-29 (169)
250 1ly1_A Polynucleotide kinase; 97.2 0.00022 7.4E-09 57.8 3.4 22 108-129 3-24 (181)
251 1ypw_A Transitional endoplasmi 97.2 0.0002 6.7E-09 72.7 3.8 32 101-132 232-263 (806)
252 3kl4_A SRP54, signal recogniti 97.2 0.00025 8.7E-09 66.8 4.3 34 106-142 96-130 (433)
253 1nn5_A Similar to deoxythymidy 97.2 0.00023 8E-09 59.4 3.6 29 104-132 6-34 (215)
254 2vli_A Antibiotic resistance p 97.1 0.0002 6.7E-09 58.4 2.7 27 106-132 4-30 (183)
255 1gvn_B Zeta; postsegregational 97.1 0.0003 1E-08 62.6 4.1 29 103-131 29-57 (287)
256 2zej_A Dardarin, leucine-rich 97.1 0.00018 6.1E-09 58.9 2.3 23 109-131 4-26 (184)
257 1nks_A Adenylate kinase; therm 97.1 0.00027 9.2E-09 57.8 3.3 24 109-132 3-26 (194)
258 2z0h_A DTMP kinase, thymidylat 97.1 0.00032 1.1E-08 57.8 3.8 24 109-132 2-25 (197)
259 1aky_A Adenylate kinase; ATP:A 97.1 0.00037 1.3E-08 58.9 4.1 27 106-132 3-29 (220)
260 1ex7_A Guanylate kinase; subst 97.1 0.00029 1E-08 58.8 3.4 23 110-132 4-26 (186)
261 3cf0_A Transitional endoplasmi 97.1 0.00031 1.1E-08 62.6 3.8 32 101-132 43-74 (301)
262 1mky_A Probable GTP-binding pr 97.1 0.00032 1.1E-08 66.0 3.8 25 107-131 180-204 (439)
263 2cdn_A Adenylate kinase; phosp 97.0 0.00045 1.5E-08 57.5 4.2 28 105-132 18-45 (201)
264 1qf9_A UMP/CMP kinase, protein 97.0 0.00046 1.6E-08 56.4 4.2 26 107-132 6-31 (194)
265 1zuh_A Shikimate kinase; alpha 97.0 0.00043 1.5E-08 55.8 3.9 26 107-132 7-32 (168)
266 4ag6_A VIRB4 ATPase, type IV s 97.0 0.0004 1.4E-08 64.1 4.0 27 106-132 34-60 (392)
267 1ukz_A Uridylate kinase; trans 97.0 0.00051 1.8E-08 57.1 4.3 29 104-132 12-40 (203)
268 2pbr_A DTMP kinase, thymidylat 97.0 0.00047 1.6E-08 56.5 3.8 24 109-132 2-25 (195)
269 3fb4_A Adenylate kinase; psych 97.0 0.00047 1.6E-08 57.9 3.8 24 109-132 2-25 (216)
270 3lxx_A GTPase IMAP family memb 97.0 0.00035 1.2E-08 59.8 3.1 25 108-132 30-54 (239)
271 1e6c_A Shikimate kinase; phosp 97.0 0.00042 1.4E-08 55.9 3.3 24 109-132 4-27 (173)
272 2iyv_A Shikimate kinase, SK; t 96.9 0.0004 1.4E-08 56.8 3.1 25 108-132 3-27 (184)
273 1zd8_A GTP:AMP phosphotransfer 96.9 0.00044 1.5E-08 58.8 3.4 28 105-132 5-32 (227)
274 2pt5_A Shikimate kinase, SK; a 96.9 0.00057 2E-08 54.9 3.9 24 109-132 2-25 (168)
275 1zak_A Adenylate kinase; ATP:A 96.9 0.00045 1.5E-08 58.5 3.2 27 106-132 4-30 (222)
276 3dl0_A Adenylate kinase; phosp 96.9 0.00056 1.9E-08 57.5 3.6 24 109-132 2-25 (216)
277 2grj_A Dephospho-COA kinase; T 96.9 0.00065 2.2E-08 56.8 3.8 27 106-132 11-37 (192)
278 3tlx_A Adenylate kinase 2; str 96.9 0.00079 2.7E-08 58.1 4.4 28 105-132 27-54 (243)
279 3k53_A Ferrous iron transport 96.9 0.00042 1.5E-08 60.7 2.7 25 108-132 4-28 (271)
280 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00077 2.6E-08 58.8 4.3 27 106-132 3-29 (260)
281 3umf_A Adenylate kinase; rossm 96.8 0.0011 3.6E-08 56.7 4.6 31 102-132 24-54 (217)
282 2qtf_A Protein HFLX, GTP-bindi 96.8 0.00048 1.7E-08 63.4 2.6 26 107-132 178-204 (364)
283 2ged_A SR-beta, signal recogni 96.7 0.00089 3E-08 54.7 3.6 26 106-131 47-72 (193)
284 2xb4_A Adenylate kinase; ATP-b 96.7 0.00097 3.3E-08 56.7 3.8 24 109-132 2-25 (223)
285 3auy_A DNA double-strand break 96.7 0.00026 8.8E-09 65.2 0.2 32 97-129 16-47 (371)
286 2f6r_A COA synthase, bifunctio 96.7 0.0009 3.1E-08 59.2 3.6 55 223-285 198-252 (281)
287 3be4_A Adenylate kinase; malar 96.7 0.00093 3.2E-08 56.4 3.4 27 106-132 4-30 (217)
288 1v5w_A DMC1, meiotic recombina 96.7 0.0012 4.1E-08 60.1 4.3 28 103-130 118-145 (343)
289 1jal_A YCHF protein; nucleotid 96.7 0.0012 4.2E-08 60.7 4.3 24 107-130 2-25 (363)
290 1z2a_A RAS-related protein RAB 96.7 0.0011 3.8E-08 52.4 3.6 24 108-131 6-29 (168)
291 3bos_A Putative DNA replicatio 96.6 0.0013 4.4E-08 55.4 4.1 27 106-132 51-77 (242)
292 1fnn_A CDC6P, cell division co 96.6 0.0014 4.6E-08 59.6 4.4 27 106-132 41-69 (389)
293 2dyk_A GTP-binding protein; GT 96.6 0.0012 4.2E-08 51.8 3.6 23 109-131 3-25 (161)
294 2ius_A DNA translocase FTSK; n 96.6 0.00085 2.9E-08 64.5 3.1 31 99-129 159-189 (512)
295 3d3q_A TRNA delta(2)-isopenten 96.6 0.0012 4E-08 60.3 3.7 25 108-132 8-32 (340)
296 1w1w_A Structural maintenance 96.6 0.00033 1.1E-08 65.7 0.1 49 190-238 329-400 (430)
297 1kao_A RAP2A; GTP-binding prot 96.6 0.0013 4.4E-08 51.8 3.6 24 108-131 4-27 (167)
298 1u8z_A RAS-related protein RAL 96.6 0.0012 4E-08 52.1 3.3 24 108-131 5-28 (168)
299 2h92_A Cytidylate kinase; ross 96.6 0.0011 3.7E-08 55.7 3.2 60 226-285 137-200 (219)
300 2ce2_X GTPase HRAS; signaling 96.6 0.0011 3.9E-08 52.0 3.2 23 109-131 5-27 (166)
301 3llm_A ATP-dependent RNA helic 96.6 0.00077 2.6E-08 57.7 2.3 27 103-129 72-98 (235)
302 1e4v_A Adenylate kinase; trans 96.6 0.0012 4.1E-08 55.5 3.4 24 109-132 2-25 (214)
303 1z0j_A RAB-22, RAS-related pro 96.6 0.0013 4.3E-08 52.2 3.4 24 108-131 7-30 (170)
304 1ak2_A Adenylate kinase isoenz 96.6 0.0016 5.4E-08 55.6 4.2 27 106-132 15-41 (233)
305 4edh_A DTMP kinase, thymidylat 96.6 0.0016 5.3E-08 55.4 4.1 28 105-132 4-31 (213)
306 2w58_A DNAI, primosome compone 96.6 0.002 6.8E-08 53.4 4.7 25 108-132 55-79 (202)
307 2qby_A CDC6 homolog 1, cell di 96.6 0.0011 3.7E-08 60.0 3.2 28 105-132 43-70 (386)
308 2lkc_A Translation initiation 96.6 0.0013 4.6E-08 52.6 3.4 26 105-130 6-31 (178)
309 3v9p_A DTMP kinase, thymidylat 96.6 0.0012 4.2E-08 56.7 3.3 28 105-132 23-50 (227)
310 1z08_A RAS-related protein RAB 96.6 0.0015 5E-08 51.9 3.6 24 108-131 7-30 (170)
311 3b1v_A Ferrous iron uptake tra 96.6 0.001 3.4E-08 58.7 2.8 24 108-131 4-27 (272)
312 1ky3_A GTP-binding protein YPT 96.6 0.0015 5E-08 52.4 3.6 24 108-131 9-32 (182)
313 1ek0_A Protein (GTP-binding pr 96.5 0.0013 4.6E-08 51.9 3.3 23 109-131 5-27 (170)
314 1njg_A DNA polymerase III subu 96.5 0.00069 2.4E-08 56.6 1.7 24 109-132 47-70 (250)
315 1c1y_A RAS-related protein RAP 96.5 0.0014 4.7E-08 51.8 3.3 22 109-130 5-26 (167)
316 1wms_A RAB-9, RAB9, RAS-relate 96.5 0.0014 4.7E-08 52.5 3.4 23 109-131 9-31 (177)
317 1upt_A ARL1, ADP-ribosylation 96.5 0.002 6.8E-08 51.1 4.2 25 106-130 6-30 (171)
318 2erx_A GTP-binding protein DI- 96.5 0.0013 4.4E-08 52.1 3.1 23 108-130 4-26 (172)
319 1g16_A RAS-related protein SEC 96.5 0.0013 4.3E-08 52.2 2.9 23 109-131 5-27 (170)
320 2nzj_A GTP-binding protein REM 96.5 0.0013 4.3E-08 52.5 2.8 24 108-131 5-28 (175)
321 1sxj_D Activator 1 41 kDa subu 96.5 0.001 3.6E-08 59.7 2.5 23 110-132 61-83 (353)
322 2fn4_A P23, RAS-related protei 96.5 0.0015 5.2E-08 52.2 3.2 23 108-130 10-32 (181)
323 3b9p_A CG5977-PA, isoform A; A 96.5 0.0018 6.1E-08 57.1 3.9 27 106-132 53-79 (297)
324 1r2q_A RAS-related protein RAB 96.5 0.0016 5.6E-08 51.4 3.3 23 108-130 7-29 (170)
325 3lv8_A DTMP kinase, thymidylat 96.5 0.0016 5.5E-08 56.3 3.5 27 106-132 26-52 (236)
326 4dsu_A GTPase KRAS, isoform 2B 96.4 0.0018 6.3E-08 52.2 3.6 24 108-131 5-28 (189)
327 3q85_A GTP-binding protein REM 96.4 0.0014 4.8E-08 52.0 2.8 22 109-130 4-25 (169)
328 3clv_A RAB5 protein, putative; 96.4 0.0025 8.7E-08 51.8 4.4 25 107-131 7-31 (208)
329 1jbk_A CLPB protein; beta barr 96.4 0.0024 8.3E-08 51.3 4.2 28 105-132 41-68 (195)
330 2oil_A CATX-8, RAS-related pro 96.4 0.0019 6.4E-08 52.8 3.6 24 108-131 26-49 (193)
331 3bc1_A RAS-related protein RAB 96.4 0.0019 6.5E-08 52.2 3.6 24 108-131 12-35 (195)
332 2ocp_A DGK, deoxyguanosine kin 96.4 0.0019 6.4E-08 55.4 3.6 27 106-132 1-27 (241)
333 2o5v_A DNA replication and rep 96.4 2.4E-05 8.3E-10 72.1 -8.9 66 189-255 259-354 (359)
334 3t1o_A Gliding protein MGLA; G 96.4 0.002 6.9E-08 52.3 3.6 25 108-132 15-39 (198)
335 3sr0_A Adenylate kinase; phosp 96.4 0.0022 7.5E-08 54.2 3.8 24 109-132 2-25 (206)
336 1svi_A GTP-binding protein YSX 96.4 0.0013 4.6E-08 53.6 2.5 25 106-130 22-46 (195)
337 3q72_A GTP-binding protein RAD 96.4 0.001 3.5E-08 52.7 1.6 23 109-131 4-26 (166)
338 1r8s_A ADP-ribosylation factor 96.4 0.0022 7.4E-08 50.6 3.6 23 109-131 2-24 (164)
339 3con_A GTPase NRAS; structural 96.4 0.0021 7.2E-08 52.2 3.6 24 108-131 22-45 (190)
340 1fzq_A ADP-ribosylation factor 96.4 0.0013 4.4E-08 53.6 2.2 25 106-130 15-39 (181)
341 4tmk_A Protein (thymidylate ki 96.4 0.002 7E-08 54.7 3.5 27 106-132 2-28 (213)
342 3pqc_A Probable GTP-binding pr 96.4 0.0014 4.8E-08 53.2 2.5 24 108-131 24-47 (195)
343 2a9k_A RAS-related protein RAL 96.4 0.0022 7.4E-08 51.6 3.6 24 108-131 19-42 (187)
344 1ltq_A Polynucleotide kinase; 96.4 0.0019 6.4E-08 57.1 3.4 23 108-130 3-25 (301)
345 3lxw_A GTPase IMAP family memb 96.4 0.0017 5.8E-08 56.2 3.1 25 107-131 21-45 (247)
346 3ld9_A DTMP kinase, thymidylat 96.4 0.0026 9E-08 54.5 4.2 28 105-132 19-46 (223)
347 1z0f_A RAB14, member RAS oncog 96.4 0.0022 7.5E-08 51.2 3.6 24 108-131 16-39 (179)
348 2e87_A Hypothetical protein PH 96.4 0.0013 4.6E-08 60.0 2.5 27 105-131 165-191 (357)
349 2g6b_A RAS-related protein RAB 96.3 0.0023 7.8E-08 51.3 3.6 24 108-131 11-34 (180)
350 3h4m_A Proteasome-activating n 96.3 0.0022 7.7E-08 56.0 3.8 29 104-132 48-76 (285)
351 3crm_A TRNA delta(2)-isopenten 96.3 0.0021 7.3E-08 58.1 3.6 25 108-132 6-30 (323)
352 3tw8_B RAS-related protein RAB 96.3 0.0013 4.6E-08 52.6 2.1 23 108-130 10-32 (181)
353 2y8e_A RAB-protein 6, GH09086P 96.3 0.002 7E-08 51.4 3.2 23 108-130 15-37 (179)
354 2dby_A GTP-binding protein; GD 96.3 0.002 6.8E-08 59.4 3.4 23 109-131 3-25 (368)
355 3ihw_A Centg3; RAS, centaurin, 96.3 0.0024 8E-08 52.2 3.6 23 108-130 21-43 (184)
356 3zvl_A Bifunctional polynucleo 96.3 0.0021 7.3E-08 60.0 3.7 30 102-131 253-282 (416)
357 2hxs_A RAB-26, RAS-related pro 96.3 0.0021 7.3E-08 51.4 3.2 23 108-130 7-29 (178)
358 2efe_B Small GTP-binding prote 96.3 0.0025 8.6E-08 51.1 3.6 24 108-131 13-36 (181)
359 2bov_A RAla, RAS-related prote 96.3 0.0022 7.7E-08 52.6 3.3 24 108-131 15-38 (206)
360 1nrj_B SR-beta, signal recogni 96.3 0.0024 8.3E-08 53.2 3.6 24 108-131 13-36 (218)
361 1ypw_A Transitional endoplasmi 96.3 0.0012 4.1E-08 66.9 1.9 33 100-132 504-536 (806)
362 1vg8_A RAS-related protein RAB 96.3 0.0025 8.6E-08 52.5 3.6 24 108-131 9-32 (207)
363 1wf3_A GTP-binding protein; GT 96.3 0.0019 6.6E-08 57.7 3.0 22 109-130 9-30 (301)
364 2wsm_A Hydrogenase expression/ 96.3 0.0024 8.2E-08 53.5 3.5 26 107-132 30-55 (221)
365 2cxx_A Probable GTP-binding pr 96.3 0.0016 5.4E-08 52.7 2.3 23 109-131 3-25 (190)
366 3tmk_A Thymidylate kinase; pho 96.3 0.0027 9.3E-08 54.1 3.8 28 105-132 3-30 (216)
367 2gf9_A RAS-related protein RAB 96.3 0.0024 8.3E-08 52.0 3.3 24 108-131 23-46 (189)
368 3bwd_D RAC-like GTP-binding pr 96.3 0.0029 9.9E-08 50.8 3.8 24 107-130 8-31 (182)
369 3kkq_A RAS-related protein M-R 96.3 0.0027 9.2E-08 51.2 3.6 24 107-130 18-41 (183)
370 3iev_A GTP-binding protein ERA 96.3 0.002 6.9E-08 57.6 3.0 25 107-131 10-34 (308)
371 2bme_A RAB4A, RAS-related prot 96.2 0.0024 8.2E-08 51.6 3.2 25 107-131 10-34 (186)
372 1m7b_A RND3/RHOE small GTP-bin 96.2 0.0024 8.2E-08 51.9 3.2 23 108-130 8-30 (184)
373 3tkl_A RAS-related protein RAB 96.2 0.0027 9.3E-08 51.7 3.6 24 108-131 17-40 (196)
374 2z43_A DNA repair and recombin 96.2 0.002 6.9E-08 58.0 3.0 29 103-131 103-131 (324)
375 3exa_A TRNA delta(2)-isopenten 96.2 0.003 1E-07 56.9 3.9 26 107-132 3-28 (322)
376 1mh1_A RAC1; GTP-binding, GTPa 96.2 0.0029 1E-07 50.9 3.6 23 108-130 6-28 (186)
377 3iby_A Ferrous iron transport 96.2 0.002 6.8E-08 56.2 2.7 23 109-131 3-25 (256)
378 1moz_A ARL1, ADP-ribosylation 96.2 0.002 6.7E-08 51.9 2.4 25 105-129 16-40 (183)
379 2r62_A Cell division protease 96.2 0.0013 4.5E-08 57.0 1.5 34 97-132 36-69 (268)
380 2fv8_A H6, RHO-related GTP-bin 96.2 0.0028 9.5E-08 52.6 3.4 33 98-130 16-48 (207)
381 3a8t_A Adenylate isopentenyltr 96.2 0.0026 8.8E-08 57.9 3.4 27 106-132 39-65 (339)
382 2cjw_A GTP-binding protein GEM 96.2 0.003 1E-07 52.0 3.6 23 108-130 7-29 (192)
383 1l8q_A Chromosomal replication 96.2 0.0024 8.2E-08 57.1 3.2 27 106-132 36-62 (324)
384 2fg5_A RAB-22B, RAS-related pr 96.2 0.0027 9.1E-08 52.0 3.2 24 108-131 24-47 (192)
385 1ko7_A HPR kinase/phosphatase; 96.2 0.0021 7.3E-08 57.9 2.8 55 74-129 104-166 (314)
386 1sky_E F1-ATPase, F1-ATP synth 96.2 0.0029 9.8E-08 60.1 3.7 36 96-132 141-176 (473)
387 2qmh_A HPR kinase/phosphorylas 96.2 0.0033 1.1E-07 53.0 3.6 36 96-132 24-59 (205)
388 2xtp_A GTPase IMAP family memb 96.1 0.0023 7.7E-08 55.3 2.7 25 107-131 22-46 (260)
389 2p65_A Hypothetical protein PF 96.1 0.0031 1.1E-07 50.7 3.3 27 106-132 42-68 (187)
390 2v3c_C SRP54, signal recogniti 96.1 0.0026 8.9E-08 59.8 3.2 31 102-132 92-124 (432)
391 1z06_A RAS-related protein RAB 96.1 0.0034 1.2E-07 51.1 3.6 23 108-130 21-43 (189)
392 2iwr_A Centaurin gamma 1; ANK 96.1 0.003 1E-07 50.7 3.2 24 107-130 7-30 (178)
393 3t5g_A GTP-binding protein RHE 96.1 0.003 1E-07 50.8 3.2 23 108-130 7-29 (181)
394 3bh0_A DNAB-like replicative h 96.1 0.0026 8.8E-08 57.2 3.0 37 96-132 57-93 (315)
395 2gf0_A GTP-binding protein DI- 96.1 0.0037 1.3E-07 51.0 3.8 24 107-130 8-31 (199)
396 2a5j_A RAS-related protein RAB 96.1 0.0034 1.2E-07 51.2 3.6 24 108-131 22-45 (191)
397 3dz8_A RAS-related protein RAB 96.1 0.003 1E-07 51.6 3.2 24 108-131 24-47 (191)
398 2p5s_A RAS and EF-hand domain 96.1 0.0039 1.3E-07 51.3 3.9 26 106-131 27-52 (199)
399 1p5z_B DCK, deoxycytidine kina 96.1 0.0016 5.4E-08 56.7 1.5 28 105-132 22-49 (263)
400 1zd9_A ADP-ribosylation factor 96.1 0.0035 1.2E-07 51.1 3.6 26 106-131 21-46 (188)
401 3oes_A GTPase rhebl1; small GT 96.1 0.0032 1.1E-07 51.9 3.3 26 106-131 23-48 (201)
402 3a1s_A Iron(II) transport prot 96.1 0.0028 9.7E-08 55.2 3.1 24 108-131 6-29 (258)
403 3reg_A RHO-like small GTPase; 96.1 0.0036 1.2E-07 51.2 3.6 25 107-131 23-47 (194)
404 1x3s_A RAS-related protein RAB 96.1 0.0036 1.2E-07 50.8 3.6 25 107-131 15-39 (195)
405 2ew1_A RAS-related protein RAB 96.1 0.0032 1.1E-07 52.4 3.2 24 108-131 27-50 (201)
406 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0046 1.6E-07 53.0 4.3 28 105-132 37-64 (262)
407 1ksh_A ARF-like protein 2; sma 96.1 0.0031 1E-07 51.1 2.9 27 105-131 16-42 (186)
408 3dm5_A SRP54, signal recogniti 96.0 0.0057 2E-07 57.6 5.1 27 106-132 99-125 (443)
409 2bcg_Y Protein YP2, GTP-bindin 96.0 0.0035 1.2E-07 51.8 3.2 24 108-131 9-32 (206)
410 2atv_A RERG, RAS-like estrogen 96.0 0.0048 1.6E-07 50.5 4.0 25 106-130 27-51 (196)
411 1zbd_A Rabphilin-3A; G protein 96.0 0.0033 1.1E-07 51.7 3.0 24 108-131 9-32 (203)
412 3cbq_A GTP-binding protein REM 96.0 0.0019 6.5E-08 53.4 1.5 23 108-130 24-46 (195)
413 2z4s_A Chromosomal replication 96.0 0.0036 1.2E-07 58.9 3.5 26 107-132 130-155 (440)
414 3foz_A TRNA delta(2)-isopenten 96.0 0.0048 1.7E-07 55.5 4.2 26 107-132 10-35 (316)
415 4hlc_A DTMP kinase, thymidylat 96.0 0.0051 1.7E-07 51.8 4.1 26 107-132 2-27 (205)
416 3cph_A RAS-related protein SEC 96.0 0.0047 1.6E-07 51.0 3.8 26 106-131 19-44 (213)
417 3c5c_A RAS-like protein 12; GD 96.0 0.0044 1.5E-07 50.5 3.6 24 107-130 21-44 (187)
418 3i8s_A Ferrous iron transport 96.0 0.003 1E-07 55.5 2.7 24 108-131 4-27 (274)
419 1jwy_B Dynamin A GTPase domain 96.0 0.0029 1E-07 56.1 2.7 22 109-130 26-47 (315)
420 2fh5_B SR-beta, signal recogni 96.0 0.0044 1.5E-07 51.5 3.6 24 108-131 8-31 (214)
421 1u94_A RECA protein, recombina 96.0 0.0043 1.5E-07 56.8 3.8 29 104-132 60-88 (356)
422 1gwn_A RHO-related GTP-binding 96.0 0.0038 1.3E-07 52.0 3.2 24 108-131 29-52 (205)
423 3gmt_A Adenylate kinase; ssgci 96.0 0.0048 1.6E-07 53.1 3.8 26 107-132 8-33 (230)
424 1zj6_A ADP-ribosylation factor 96.0 0.004 1.4E-07 50.5 3.2 25 106-130 15-39 (187)
425 2i1q_A DNA repair and recombin 95.9 0.0036 1.2E-07 56.1 3.1 28 103-130 94-121 (322)
426 2hf9_A Probable hydrogenase ni 95.9 0.0042 1.4E-07 52.1 3.2 26 107-132 38-63 (226)
427 2o52_A RAS-related protein RAB 95.9 0.0029 1E-07 52.2 2.2 23 108-130 26-48 (200)
428 4a1f_A DNAB helicase, replicat 95.9 0.0041 1.4E-07 56.6 3.3 36 97-132 36-71 (338)
429 3t5d_A Septin-7; GTP-binding p 95.9 0.0024 8E-08 56.0 1.6 22 109-130 10-31 (274)
430 3p32_A Probable GTPase RV1496/ 95.9 0.0061 2.1E-07 55.6 4.4 29 104-132 76-104 (355)
431 2il1_A RAB12; G-protein, GDP, 95.8 0.0028 9.5E-08 52.0 1.8 23 108-130 27-49 (192)
432 2gco_A H9, RHO-related GTP-bin 95.8 0.0047 1.6E-07 50.9 3.2 24 108-131 26-49 (201)
433 2h17_A ADP-ribosylation factor 95.8 0.0037 1.3E-07 50.5 2.5 24 107-130 21-44 (181)
434 2zts_A Putative uncharacterize 95.8 0.0049 1.7E-07 52.3 3.3 26 103-128 26-51 (251)
435 2f7s_A C25KG, RAS-related prot 95.8 0.0043 1.5E-07 51.6 2.9 23 108-130 26-48 (217)
436 4dhe_A Probable GTP-binding pr 95.8 0.0017 5.8E-08 54.3 0.3 25 107-131 29-53 (223)
437 2fu5_C RAS-related protein RAB 95.8 0.0031 1.1E-07 50.8 1.9 23 108-130 9-31 (183)
438 2qu8_A Putative nucleolar GTP- 95.8 0.0047 1.6E-07 52.2 3.1 24 107-130 29-52 (228)
439 4bas_A ADP-ribosylation factor 95.8 0.0034 1.1E-07 51.2 2.1 25 106-130 16-40 (199)
440 2atx_A Small GTP binding prote 95.8 0.0053 1.8E-07 50.1 3.2 23 108-130 19-41 (194)
441 2h57_A ADP-ribosylation factor 95.8 0.0025 8.6E-08 51.9 1.2 26 106-131 20-45 (190)
442 3eph_A TRNA isopentenyltransfe 95.7 0.0065 2.2E-07 56.6 3.9 25 108-132 3-27 (409)
443 2j1l_A RHO-related GTP-binding 95.7 0.0044 1.5E-07 51.8 2.5 23 108-130 35-57 (214)
444 2q3h_A RAS homolog gene family 95.7 0.0056 1.9E-07 50.2 3.1 25 106-130 19-43 (201)
445 2hup_A RAS-related protein RAB 95.7 0.006 2.1E-07 50.4 3.2 23 108-130 30-52 (201)
446 2aka_B Dynamin-1; fusion prote 95.7 0.0044 1.5E-07 54.4 2.4 24 108-131 27-50 (299)
447 3cpj_B GTP-binding protein YPT 95.7 0.0064 2.2E-07 51.0 3.4 24 108-131 14-37 (223)
448 3pvs_A Replication-associated 95.7 0.0026 9E-08 60.0 1.0 24 109-132 52-75 (447)
449 2orw_A Thymidine kinase; TMTK, 95.7 0.0072 2.5E-07 49.9 3.6 26 106-131 2-28 (184)
450 3llu_A RAS-related GTP-binding 95.7 0.0047 1.6E-07 50.7 2.5 24 108-131 21-44 (196)
451 3def_A T7I23.11 protein; chlor 95.6 0.005 1.7E-07 53.5 2.7 25 107-131 36-60 (262)
452 4gzl_A RAS-related C3 botulinu 95.6 0.0065 2.2E-07 50.3 3.2 24 107-130 30-53 (204)
453 2chg_A Replication factor C sm 95.6 0.0077 2.6E-07 49.5 3.6 24 109-132 40-63 (226)
454 2g3y_A GTP-binding protein GEM 95.6 0.0059 2E-07 51.5 2.8 23 108-130 38-60 (211)
455 3cnl_A YLQF, putative uncharac 95.6 0.0055 1.9E-07 53.6 2.7 25 108-132 100-124 (262)
456 3t15_A Ribulose bisphosphate c 95.6 0.0084 2.9E-07 53.1 3.8 29 104-132 33-61 (293)
457 3q3j_B RHO-related GTP-binding 95.5 0.0081 2.8E-07 50.3 3.6 24 107-130 27-50 (214)
458 1h65_A Chloroplast outer envel 95.5 0.0056 1.9E-07 53.4 2.7 24 108-131 40-63 (270)
459 2v1u_A Cell division control p 95.5 0.007 2.4E-07 54.6 3.4 28 105-132 42-69 (387)
460 2b6h_A ADP-ribosylation factor 95.5 0.0087 3E-07 49.0 3.7 25 105-129 27-51 (192)
461 2yc2_C IFT27, small RAB-relate 95.5 0.0031 1.1E-07 51.7 0.8 24 107-130 20-43 (208)
462 3tqf_A HPR(Ser) kinase; transf 95.5 0.0087 3E-07 49.3 3.4 24 106-129 15-38 (181)
463 3syl_A Protein CBBX; photosynt 95.5 0.0089 3.1E-07 52.6 3.8 27 106-132 66-92 (309)
464 2j0v_A RAC-like GTP-binding pr 95.5 0.0094 3.2E-07 49.3 3.7 25 106-130 8-32 (212)
465 3l0o_A Transcription terminati 95.4 0.0097 3.3E-07 55.2 4.0 34 99-132 167-200 (427)
466 3n70_A Transport activator; si 95.4 0.0091 3.1E-07 46.9 3.3 27 106-132 23-49 (145)
467 1tue_A Replication protein E1; 95.4 0.0088 3E-07 50.7 3.3 30 103-132 54-83 (212)
468 4djt_A GTP-binding nuclear pro 95.4 0.0029 1E-07 52.7 0.2 23 108-130 12-34 (218)
469 1m8p_A Sulfate adenylyltransfe 95.4 0.011 3.8E-07 57.5 4.3 28 105-132 394-421 (573)
470 2q6t_A DNAB replication FORK h 95.3 0.0083 2.8E-07 56.4 3.1 37 96-132 189-225 (444)
471 1g8f_A Sulfate adenylyltransfe 95.3 0.011 3.7E-07 56.8 3.9 29 104-132 392-420 (511)
472 1x6v_B Bifunctional 3'-phospho 95.3 0.012 4.1E-07 57.8 4.2 27 106-132 51-77 (630)
473 4dcu_A GTP-binding protein ENG 95.2 0.0055 1.9E-07 57.8 1.7 22 109-130 25-46 (456)
474 1xwi_A SKD1 protein; VPS4B, AA 95.2 0.013 4.3E-07 52.7 4.0 27 105-131 43-69 (322)
475 1puj_A YLQF, conserved hypothe 95.2 0.01 3.6E-07 52.4 3.2 26 106-131 119-144 (282)
476 2x77_A ADP-ribosylation factor 95.2 0.0085 2.9E-07 48.6 2.4 24 106-129 21-44 (189)
477 1ofh_A ATP-dependent HSL prote 95.1 0.012 4.2E-07 51.5 3.6 26 107-132 50-75 (310)
478 2j37_W Signal recognition part 95.1 0.016 5.4E-07 55.6 4.5 28 105-132 99-126 (504)
479 2xau_A PRE-mRNA-splicing facto 95.1 0.0086 2.9E-07 60.4 2.8 29 104-132 106-134 (773)
480 1d2n_A N-ethylmaleimide-sensit 95.1 0.016 5.4E-07 50.3 4.1 28 105-132 62-89 (272)
481 3hws_A ATP-dependent CLP prote 95.1 0.012 4.1E-07 53.5 3.4 27 106-132 50-76 (363)
482 3uk6_A RUVB-like 2; hexameric 95.1 0.014 4.6E-07 52.8 3.7 28 105-132 68-95 (368)
483 2vhj_A Ntpase P4, P4; non- hyd 95.1 0.011 3.9E-07 53.3 3.1 28 103-130 119-146 (331)
484 2qby_B CDC6 homolog 3, cell di 95.0 0.015 5.1E-07 52.7 3.8 27 106-132 44-70 (384)
485 3r7w_A Gtpase1, GTP-binding pr 95.0 0.012 4.2E-07 52.4 3.1 25 106-130 2-26 (307)
486 3fdi_A Uncharacterized protein 95.0 0.014 5E-07 48.7 3.4 25 108-132 7-31 (201)
487 2axn_A 6-phosphofructo-2-kinas 95.0 0.018 6.1E-07 55.4 4.4 27 106-132 34-60 (520)
488 1yrb_A ATP(GTP)binding protein 95.0 0.021 7.3E-07 48.9 4.5 27 105-131 12-38 (262)
489 3gj0_A GTP-binding nuclear pro 95.0 0.0096 3.3E-07 49.7 2.2 25 108-132 16-41 (221)
490 3geh_A MNME, tRNA modification 94.9 0.014 4.8E-07 55.3 3.5 28 105-132 222-249 (462)
491 1bif_A 6-phosphofructo-2-kinas 94.9 0.018 6.2E-07 54.4 4.3 27 106-132 38-64 (469)
492 2qgz_A Helicase loader, putati 94.9 0.018 6.3E-07 51.4 4.0 26 107-132 152-177 (308)
493 3d8b_A Fidgetin-like protein 1 94.9 0.018 6.1E-07 52.4 4.0 28 105-132 115-142 (357)
494 3hjn_A DTMP kinase, thymidylat 94.9 0.018 6.2E-07 48.0 3.7 24 109-132 2-25 (197)
495 3th5_A RAS-related C3 botulinu 93.9 0.0047 1.6E-07 51.0 0.0 24 107-130 30-53 (204)
496 3eie_A Vacuolar protein sortin 94.9 0.02 6.7E-07 51.3 4.1 27 106-132 50-76 (322)
497 2xxa_A Signal recognition part 94.8 0.024 8.3E-07 53.2 4.8 28 105-132 98-125 (433)
498 1xp8_A RECA protein, recombina 94.8 0.016 5.3E-07 53.3 3.4 29 103-131 70-98 (366)
499 1wxq_A GTP-binding protein; st 94.8 0.011 3.8E-07 54.8 2.5 23 109-131 2-24 (397)
500 2r44_A Uncharacterized protein 94.8 0.0041 1.4E-07 55.7 -0.5 30 103-132 42-71 (331)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.5e-35 Score=274.27 Aligned_cols=174 Identities=16% Similarity=0.241 Sum_probs=138.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH----H-H
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK----E-A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~----~-~ 150 (287)
+|+++||+|.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++| |.++|+++. . .
T Consensus 4 ~l~i~~ls~~y~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~i~~~~~~~~ 76 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTP----VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFSKNTNLP 76 (359)
T ss_dssp CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEESSSCBCC
T ss_pred EEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEECcccccccc
Confidence 699999999998866 9999999999999999999999999999999999999 9999 999998651 1 1
Q ss_pred hhhCCCCCCCChhHH---HHHHHHHhcCCceeeccCC---------------ccCCCCCCCceeccccceEEE-----ec
Q 023106 151 HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
..+++++++||.+.+ +|+.+|+.++......... ....++++.+|||||||||+| .+
T Consensus 77 ~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~ 156 (359)
T 3fvq_A 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPD 156 (359)
T ss_dssp GGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 234557777776543 7999999987543211000 124578999999999999998 89
Q ss_pred CCEEeEec-----------chHHHHHhcc---C-CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMF---D-EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~---~-~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
|++||||| .+++.+.++. . .+|+||||++++.. |++ |++++.|+++++..
T Consensus 157 P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 157 PELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999 3444444432 2 25799999999987 554 88889999988753
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=7.9e-36 Score=278.04 Aligned_cols=175 Identities=18% Similarity=0.286 Sum_probs=138.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
|.+|+++||+|.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++| |.++|+++... ..
T Consensus 1 M~~l~~~~l~~~yg~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 1 MASVQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPA 73 (381)
T ss_dssp -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGG
T ss_pred CCEEEEEeEEEEECCEE----EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC---CCCeEEEECCEECCCCCHH
Confidence 45699999999998766 9999999999999999999999999999999999999 9999 99999865432 22
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeecc--------------CC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
.++++++||.+.+ +|+.+|+.++....... +. ....++++.+|||||||||+| .+|+
T Consensus 74 ~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~ 153 (381)
T 3rlf_A 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (381)
T ss_dssp GSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCS
T ss_pred HCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCC
Confidence 3456677776543 79999998864321100 00 124578999999999999999 8999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+||||| .+++.|+++.+ ..|+||||++++.. |++ |++++.|+++++.
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 999999 45555655532 24799999999987 554 8888899998874
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.97 E-value=9.5e-35 Score=269.23 Aligned_cols=179 Identities=19% Similarity=0.229 Sum_probs=137.7
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH-----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK----- 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~----- 148 (287)
++||+++||+|.|++......+|+||||+|++|+++||+||||||||||+|+|+|+++ |++| |.++|+++.
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSES 98 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECSSCCHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence 4579999999999753223448999999999999999999999999999999999999 9999 999998642
Q ss_pred HH-hhhCCCCCCCChhHH---HHHHHHHhcCCceeecc--------------CC-ccCCCCCCCceeccccceEEE----
Q 023106 149 EA-HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 149 ~~-~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
.. ..++.++++||...+ +|+.+|+.++....... +. ....++++.+|||||||||+|
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL 178 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 178 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHT
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 11 224556666665443 69999998753321100 00 124578999999999999999
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|+++.+ .+|+||||++++.. |++ |++++.|++.++.
T Consensus 179 ~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 179 ASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 8999999999 45666666532 24699999999976 554 8989999988874
No 4
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.97 E-value=2.9e-34 Score=267.31 Aligned_cols=176 Identities=16% Similarity=0.295 Sum_probs=136.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
|.+|+++||+|.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++| |.++|+++... ..
T Consensus 9 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 9 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred eeeEEEEEEEEEECCEE----EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCCCChh
Confidence 55799999999998765 8999999999999999999999999999999999999 9999 99999765321 12
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceee-cc-------------CC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYA-PS-------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~~-------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
++.++++||.+.+ +|+.+|+.++..... +. +. ....++++.+|||||||||+| .+|+
T Consensus 82 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 161 (372)
T 1v43_A 82 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD 161 (372)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3456777776554 699999998754321 00 00 123578999999999999998 9999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+||||| .+++.|+++.. .+|+||||++++.. |++ |++++.|++.++..
T Consensus 162 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 162 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999 45555555532 25799999999876 544 78888899888753
No 5
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.97 E-value=1.5e-34 Score=268.02 Aligned_cols=176 Identities=16% Similarity=0.263 Sum_probs=136.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
|.+|+++||+|.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++| |.++|+++... ..
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 1 MPSIRVVNLKKYFGKVK----AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred CcEEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC---CCccEEEECCEECCCCChh
Confidence 44699999999998765 8999999999999999999999999999999999999 9999 99999765321 12
Q ss_pred hCCCCCCCChhH---HHHHHHHHhcCCceee-cc-------------CC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLL---LLNCLKNLRNQGSVYA-PS-------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~~-------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
++.++++||.+. .+|+.+|+.++..... +. +. ....++++.+|||||||||+| .+|+
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~ 153 (359)
T 2yyz_A 74 YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPK 153 (359)
T ss_dssp GTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 344666666543 2799999998643221 00 00 123578999999999999999 8999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+||||| .+++.|+++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 154 VLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999 45555555532 25799999999876 444 78888899988753
No 6
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.97 E-value=2.2e-34 Score=267.21 Aligned_cols=176 Identities=19% Similarity=0.302 Sum_probs=136.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
|.+|+++||+|.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++| |.++|+++... ..
T Consensus 1 m~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 1 MVEIKLENIVKKFGNFT----ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPK 73 (362)
T ss_dssp CCCEEEEEEEEESSSSE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred CcEEEEEeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHh
Confidence 44699999999998765 8999999999999999999999999999999999999 9999 89999765321 12
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
++.++++||...+ +++.+|+.++..... + .+. ....++++.+|||||||||+| .+|+
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 153 (362)
T 2it1_A 74 DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPE 153 (362)
T ss_dssp GTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred HCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3446666665432 699999987532110 0 011 124578999999999999998 9999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+||||| .+++.|+++.+ .+|+||||++++.. |++ |++++.|+++++..
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 154 VLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp EEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999 45555555532 25799999999876 544 78888899888753
No 7
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.97 E-value=2e-34 Score=268.59 Aligned_cols=176 Identities=14% Similarity=0.219 Sum_probs=136.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
|.+|+++||+|.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++| |.++|.++..
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 73 (372)
T 1g29_1 1 MAGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG 73 (372)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred CCEEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC---CCccEEEECCEECcccccc
Confidence 45799999999998765 9999999999999999999999999999999999999 9999 9999976532
Q ss_pred ---HhhhCCCCCCCChhH---HHHHHHHHhcCCceee-cc-------------CC-ccCCCCCCCceeccccceEEE---
Q 023106 150 ---AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYA-PS-------------FD-HGVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~~-------------~~-~~~~~~~~~~LSgGekqRv~I--- 205 (287)
...++.++++||... .+|+.+|+.++..... +. +. ....++++.+|||||||||+|
T Consensus 74 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArA 153 (372)
T 1g29_1 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRA 153 (372)
T ss_dssp EECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred ccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHH
Confidence 112345666666543 2799999987532210 00 00 124578999999999999999
Q ss_pred --ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|+++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 154 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 154 IVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp HHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 8999999999 45555555532 25799999999876 444 78888899888753
No 8
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.97 E-value=4.9e-34 Score=264.11 Aligned_cols=176 Identities=19% Similarity=0.304 Sum_probs=136.8
Q ss_pred ccEEEecCchhhh-hhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-h
Q 023106 75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-H 151 (287)
Q Consensus 75 ~~~i~~~~l~~~y-~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~ 151 (287)
..+|+++||+|.| ++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++| |.++|.++... .
T Consensus 12 ~~~l~~~~l~~~y~g~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~ 84 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGAR----SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTDLPP 84 (355)
T ss_dssp CEEEEEEEEEECCTTSTT----CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCG
T ss_pred CceEEEEEEEEEEcCCCE----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECCcCCh
Confidence 3479999999999 7655 9999999999999999999999999999999999999 9999 89999765321 1
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
.++.++++||...+ +|+.+|+.++..... + .+. ....++++.+|||||||||+| .+|
T Consensus 85 ~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P 164 (355)
T 1z47_A 85 QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRP 164 (355)
T ss_dssp GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 23456667776543 799999987532110 0 011 124578999999999999998 999
Q ss_pred CEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
++||||| .+++.|+++.. .+|+||||++++.. |++ |++++.|+++++..
T Consensus 165 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 165 QVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp SEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999 45555555532 25799999999976 444 78888899888753
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.97 E-value=1.8e-33 Score=251.38 Aligned_cols=176 Identities=19% Similarity=0.243 Sum_probs=133.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--- 150 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--- 150 (287)
+++|+++||++.|++.. +|+||||+|++|+++||+||||||||||+|+|+|+++ |++| |.++|+++...
T Consensus 9 ~~~l~~~~l~~~~~~~~----vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQA----LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHLLGQNLNSWQPK 81 (266)
T ss_dssp CCEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEETTEETTTSCHH
T ss_pred cceEEEEeEEEEeCCee----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCCHH
Confidence 45899999999998876 9999999999999999999999999999999999999 9999 99999865321
Q ss_pred hhhCCCCCCCChh---HHHHHHHHHhcCCceeecc------------CC-ccCCCCCCCceeccccceEEE-----e---
Q 023106 151 HARRGAPWTFNPL---LLLNCLKNLRNQGSVYAPS------------FD-HGVGDPVEDDILVGLQHKVVI-----V--- 206 (287)
Q Consensus 151 ~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~~------------~~-~~~~~~~~~~LSgGekqRv~I-----~--- 206 (287)
.....+.+.+|.. ..+++.+|+.++....... +. ....++.+.+|||||||||+| .
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~ 161 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQ 161 (266)
T ss_dssp HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCC
T ss_pred HHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 1111122333322 2268899998754321100 11 123467899999999999998 6
Q ss_pred ---cCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 207 ---DGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ---~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++..
T Consensus 162 ~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 162 PQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp SSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred cCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 999999999 45666665532 24699999999976 544 88889999988753
No 10
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.97 E-value=3.5e-34 Score=257.00 Aligned_cols=176 Identities=18% Similarity=0.233 Sum_probs=135.3
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH--H---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK--E--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~--~--- 149 (287)
++|+++||++.|++.. .+|+||||+|++|+++||+||||||||||+++|+|+++ |++| |.++|+++. .
T Consensus 6 ~~l~i~~ls~~y~~~~---~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 6 YILKVEELNYNYSDGT---HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEEECTTSC---EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCCSHHHH
T ss_pred cEEEEEEEEEEECCCC---eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEECCEECCcccccH
Confidence 4799999999997532 28999999999999999999999999999999999999 9999 999998651 1
Q ss_pred HhhhCCCCCCCChhH----HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 150 AHARRGAPWTFNPLL----LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
...+..++++||.+. ..++.+|+.++..... + .+. ....++++.+|||||||||+|
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~ 159 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV 159 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHT
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHH
Confidence 122345666666542 2688999887532110 0 011 124578999999999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhcc---C-CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMF---D-EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~---~-~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|.++. . .+|++|||++++.. |++ |++++.|++.++..
T Consensus 160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 8999999999 4566666554 2 24699999999875 554 88899999988754
No 11
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.97 E-value=7.6e-34 Score=263.11 Aligned_cols=178 Identities=20% Similarity=0.266 Sum_probs=136.4
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
|.+|+++||+|.|++.. ..+|+|+||+|++|++++|+||||||||||+|+|+|+++ |++| |.++|+++..
T Consensus 1 M~~l~i~~l~~~y~~~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 75 (353)
T 1oxx_K 1 MVRIIVKNVSKVFKKGK--VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL 75 (353)
T ss_dssp CCCEEEEEEEEEEGGGT--EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred CcEEEEEeEEEEECCEe--eeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECcccccc
Confidence 44699999999997531 017999999999999999999999999999999999999 9999 8999976532
Q ss_pred --HhhhCCCCCCCChhHH---HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE----
Q 023106 150 --AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
...++.++++||...+ +|+.+|+.++..... + .+. ....++++.+|||||||||+|
T Consensus 76 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL 155 (353)
T 1oxx_K 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARAL 155 (353)
T ss_dssp SSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred cCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 1223456666665433 799999988643211 0 000 123578999999999999999
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|+++.. .+|+||||++++.. |++ |++++.|++.++..
T Consensus 156 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999 45555655532 25799999999876 444 78888899888753
No 12
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.97 E-value=2.3e-33 Score=249.52 Aligned_cols=173 Identities=17% Similarity=0.269 Sum_probs=132.5
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
+++|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++| |.++|.++..
T Consensus 5 ~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA 77 (257)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred CcEEEEeeeEEEECCEe----eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 45899999999998765 9999999999999999999999999999999999999 9999 8999976421
Q ss_pred HhhhCCCCCCCChhH---HHHHHHHHhcCCce---e-----------ecc-------------CC-ccCCCCCCCceecc
Q 023106 150 AHARRGAPWTFNPLL---LLNCLKNLRNQGSV---Y-----------APS-------------FD-HGVGDPVEDDILVG 198 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~---~-----------~~~-------------~~-~~~~~~~~~~LSgG 198 (287)
...+.++++++|... .+++.+|+.++... . ... +. ....++.+.+||||
T Consensus 78 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 157 (257)
T 1g6h_A 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGG 157 (257)
T ss_dssp HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHH
T ss_pred HHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHH
Confidence 112334555555433 36899999875321 0 000 00 11346789999999
Q ss_pred ccceEEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCc
Q 023106 199 LQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 199 ekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~ 252 (287)
|||||+| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|++
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 9999998 9999999999 45556655533 24699999998865 444 788888888
Q ss_pred HH
Q 023106 253 PD 254 (287)
Q Consensus 253 ~~ 254 (287)
++
T Consensus 238 ~~ 239 (257)
T 1g6h_A 238 EE 239 (257)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 13
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=5.5e-33 Score=244.69 Aligned_cols=174 Identities=20% Similarity=0.231 Sum_probs=131.4
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----H
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~ 150 (287)
+||+++||++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++| +.++|.++.. .
T Consensus 5 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred ceEEEEeEEEEECCee----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCCHHH
Confidence 4799999999998755 8999999999999999999999999999999999999 9999 8999976421 1
Q ss_pred hhhCCCCCCCChhH---HHHHHHHHhcCCceeec-------------cCC--ccCCCCCCCceeccccceEEE-----ec
Q 023106 151 HARRGAPWTFNPLL---LLNCLKNLRNQGSVYAP-------------SFD--HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 151 ~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~-------------~~~--~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
..+.++++.+|... .+|+.+|+.++...... .+. ....++.+.+|||||||||+| .+
T Consensus 78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 157 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred HHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 22334555555432 26899999875311000 010 123467899999999999998 89
Q ss_pred CCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|++.++.
T Consensus 158 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999 45555655532 35799999988765 443 7777778877764
No 14
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.97 E-value=2.5e-33 Score=249.94 Aligned_cols=174 Identities=18% Similarity=0.279 Sum_probs=129.6
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH-----H
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK-----E 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~-----~ 149 (287)
++|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++. .
T Consensus 23 ~~l~i~~l~~~y~~~~----vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp CSEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEESSSTTCCH
T ss_pred heEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCEECCCccccH
Confidence 3699999999998765 9999999999999999999999999999999999999 9999 899997542 0
Q ss_pred HhhhCCCCCCCChh---HHHHHHHHHhcCC-cee-ec-------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 150 AHARRGAPWTFNPL---LLLNCLKNLRNQG-SVY-AP-------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~---~~~tv~e~l~~~~-~~~-~~-------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
...+..+++++|.. ..+++.+|+.++. ... .. .+. ....++++.+|||||||||+|
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~ 175 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALA 175 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 11122234444432 2258888887632 110 00 011 123467899999999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 176 MEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 8999999999 45556655533 24699999999875 443 7878888887764
No 15
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=1.3e-33 Score=250.87 Aligned_cols=176 Identities=17% Similarity=0.172 Sum_probs=131.2
Q ss_pred CccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--H
Q 023106 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--A 150 (287)
Q Consensus 74 ~~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~ 150 (287)
.|++|+++||++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++.. .
T Consensus 12 ~~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~ 84 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEPH 84 (256)
T ss_dssp --CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCHH
T ss_pred cCCeEEEEEEEEEECCEE----EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCccHH
Confidence 578999999999998765 9999999999999999999999999999999999999 9999 8899976521 1
Q ss_pred hhhCCCCCCCChhH---HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 151 HARRGAPWTFNPLL---LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 151 ~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
..+..+++.+|... .+|+.+|+.+...... . .+. ....++.+.+|||||||||+| .+
T Consensus 85 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~ 164 (256)
T 1vpl_A 85 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVN 164 (256)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTC
T ss_pred HHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 12233445554432 2588888876421110 0 000 112367899999999999998 89
Q ss_pred CCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 165 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 165 PRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK 234 (256)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHH
Confidence 99999999 45566665542 24699999999875 444 7777888887764
No 16
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.97 E-value=1.5e-33 Score=247.55 Aligned_cols=176 Identities=16% Similarity=0.234 Sum_probs=124.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH-----HH
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK-----EA 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~-----~~ 150 (287)
||+++||++.|++......+|+|+||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++. ..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence 48999999999753222348999999999999999999999999999999999999 9999 899997542 11
Q ss_pred --hhhCCCCCCCChhH---HHHHHHHHhcCCcee----e---------------ccCCccCCCCCCCceeccccceEEE-
Q 023106 151 --HARRGAPWTFNPLL---LLNCLKNLRNQGSVY----A---------------PSFDHGVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 151 --~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~----~---------------~~~~~~~~~~~~~~LSgGekqRv~I- 205 (287)
.++..+++++|.+. .+++.+|+.++.... . ........++++.+|||||||||+|
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iA 157 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA 157 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHH
Confidence 11223455555433 268999987642110 0 0011112367899999999999998
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH--HHH----HHHhcCCCcHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~ 255 (287)
.+|++||||| .+++.+.++.+ .+|+||||++.+.. |++ |++++.++++++
T Consensus 158 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 158 RALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 8999999999 45566665532 24799999985422 333 666666655543
No 17
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.97 E-value=1.3e-33 Score=251.78 Aligned_cols=173 Identities=15% Similarity=0.220 Sum_probs=129.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH-------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK------- 148 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~------- 148 (287)
+|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++.
T Consensus 6 ~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 78 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKDG 78 (262)
T ss_dssp CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTTS
T ss_pred eEEEeeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEccccccccc
Confidence 699999999998765 9999999999999999999999999999999999999 9999 889997542
Q ss_pred --------H-HhhhCCCCCCCChh---HHHHHHHHHhcCC-cee-ec-------------cCC-ccC-CCCCCCceeccc
Q 023106 149 --------E-AHARRGAPWTFNPL---LLLNCLKNLRNQG-SVY-AP-------------SFD-HGV-GDPVEDDILVGL 199 (287)
Q Consensus 149 --------~-~~~~~~~~~~~~~~---~~~tv~e~l~~~~-~~~-~~-------------~~~-~~~-~~~~~~~LSgGe 199 (287)
. ...+..+++++|.. ..+|+.+|+.++. ... .. .+. ... .++++.+|||||
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq 158 (262)
T 1b0u_A 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQ 158 (262)
T ss_dssp SEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHH
T ss_pred cccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHH
Confidence 0 11122344444432 2268888887632 100 00 011 123 467899999999
Q ss_pred cceEEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcH
Q 023106 200 QHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 200 kqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~ 253 (287)
||||+| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++
T Consensus 159 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 238 (262)
T 1b0u_A 159 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE 238 (262)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999998 8999999999 45555555532 35799999999875 444 7888888887
Q ss_pred HHH
Q 023106 254 DVA 256 (287)
Q Consensus 254 ~~~ 256 (287)
++.
T Consensus 239 ~~~ 241 (262)
T 1b0u_A 239 QVF 241 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.96 E-value=3.5e-33 Score=257.96 Aligned_cols=172 Identities=19% Similarity=0.279 Sum_probs=132.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~ 154 (287)
||+++||+|.|++. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++| |.++|+++... ..++
T Consensus 1 ml~~~~l~~~y~~~-----~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 1 MIEIESLSRKWKNF-----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp CEEEEEEEEECSSC-----EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred CEEEEEEEEEECCE-----EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhhC
Confidence 48999999999652 7999999999999999999999999999999999999 9999 89999765321 1233
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCceee-c----------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEe
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVYA-P----------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLD 214 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~~-~----------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllD 214 (287)
.++++||...+ +|+.+|+.++..... + .+. ....++++.+|||||||||+| .+|++||||
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLD 152 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD 152 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 46666665432 699999987532210 0 011 123578899999999999998 999999999
Q ss_pred c-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 215 G-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 215 E-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+++.|+++.+ .+|+||||++++.. |++ |+++..|++.++.
T Consensus 153 EP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 153 EPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9 45556655532 24799999999876 444 7887888888774
No 19
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.96 E-value=1.7e-32 Score=246.66 Aligned_cols=174 Identities=14% Similarity=0.137 Sum_probs=133.0
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH--H---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK--E--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~--~--- 149 (287)
++|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++| |.++|.++. .
T Consensus 20 ~~l~~~~l~~~y~~~~----vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTBCCC---CCH
T ss_pred ceEEEEeEEEEECCEE----EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEECCEEcccccCCH
Confidence 3799999999998765 9999999999999999999999999999999999999 9999 899997653 1
Q ss_pred HhhhCCCCCCCChhHH-----HHHHHHHhcCCce----ee-c-------------cCC-ccCCCCCCCceeccccceEEE
Q 023106 150 AHARRGAPWTFNPLLL-----LNCLKNLRNQGSV----YA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~-----~tv~e~l~~~~~~----~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I 205 (287)
...+..+.+.+|...+ +++.+|+.++... .. . .+. ....++.+.+|||||||||+|
T Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~l 172 (279)
T 2ihy_A 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMI 172 (279)
T ss_dssp HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence 1223446666665431 3899999875321 00 0 000 123467899999999999998
Q ss_pred -----ecCCEEeEec-----------chHHHHHhcc---CCe--EEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -----VDGNYLFLDG-----------GVWKDVSSMF---DEK--WFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -----~~p~lLllDE-----------~~~~~l~~~~---~~~--i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++. ..+ |++|||++++.. |++ |++++.|+++++.
T Consensus 173 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 173 ARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 8999999999 4555555553 247 899999998765 444 7777888877764
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.96 E-value=2.8e-32 Score=240.15 Aligned_cols=170 Identities=16% Similarity=0.195 Sum_probs=129.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~ 154 (287)
||+++||++.|++ +|+|+||+|++ +++||+||||||||||+++|+|+++ |++| +.++|.++... ..+.
T Consensus 1 ml~~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 1 MFLKVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CCEEEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred CEEEEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhhC
Confidence 4789999999964 58999999999 9999999999999999999999999 9999 89999765321 1223
Q ss_pred CCCCCCChhH---HHHHHHHHhcCCceee------------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 155 GAPWTFNPLL---LLNCLKNLRNQGSVYA------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 155 ~~~~~~~~~~---~~tv~e~l~~~~~~~~------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
.+++.+|... .+++.+|+.++..... ..+. ....++++.+|||||||||+| .+|+++||
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL 150 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLL 150 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEE
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 4566666533 2689999988643211 0111 123467899999999999998 89999999
Q ss_pred ec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 214 DG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 214 DE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|| .+++.|.++.. .++++|||++++.. |++ |++++.|++.++.
T Consensus 151 DEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 151 DEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp ESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99 45566655532 35799999998865 443 7878888887764
No 21
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.96 E-value=4e-32 Score=236.83 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=116.3
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
+||+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 3 ~~l~~~~l~~~y~~~~----~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 3 EILRAENIKKVIRGYE----ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETTEECCSSCHHH
T ss_pred cEEEEEeEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence 4799999999998755 8999999999999999999999999999999999999 9999 8899875421
Q ss_pred H--hhhCCCCCCCChhH---HHHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE----
Q 023106 150 A--HARRGAPWTFNPLL---LLNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 150 ~--~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
. .++..+++.+|... .+++.+|+.++..... ..+. ....++++.+|||||||||+|
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral 155 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARAL 155 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHT
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 1 11123444444322 2678888876421110 0011 123467899999999999998
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
.+|+++|||| .+++.|.++.+ .+|++|||++++
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA 203 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 8999999999 45555655532 246999999876
No 22
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.96 E-value=4.3e-32 Score=243.10 Aligned_cols=174 Identities=17% Similarity=0.171 Sum_probs=130.5
Q ss_pred EEEecCchhhhhh---hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---
Q 023106 77 VVEARCMDEVYDA---LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~---~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--- 149 (287)
+|+++||++.|++ .. +|+++||+|++|++++|+||||||||||+++|+|+++ |++| |.++|.++..
T Consensus 16 ~l~~~~l~~~y~~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~ 88 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQ----VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLLDGEPLVQYDH 88 (271)
T ss_dssp CEEEEEEEECCTTCTTSC----CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCH
T ss_pred eEEEEEEEEEeCCCCCce----eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEcccCCH
Confidence 6999999999976 34 8999999999999999999999999999999999999 9999 8999986532
Q ss_pred HhhhCCCCCCCChhHH--HHHHHHHhcCCceeec-----------c-------CC---ccCCCCCCCceeccccceEEE-
Q 023106 150 AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYAP-----------S-------FD---HGVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-----------~-------~~---~~~~~~~~~~LSgGekqRv~I- 205 (287)
...+..+.+++|...+ .++.+|+.++...... . +. ....++.+.+|||||||||+|
T Consensus 89 ~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lA 168 (271)
T 2ixe_A 89 HYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALA 168 (271)
T ss_dssp HHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHH
T ss_pred HHHhccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHH
Confidence 1112223344443221 4899999875321100 0 00 012356788999999999998
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccC--C--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFD--E--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~--~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|.++.. . +|++|||++++.. |++ |++++.|+++++..
T Consensus 169 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 169 RALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 56677777643 2 4699999998754 443 78788888888754
No 23
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.96 E-value=1.8e-31 Score=235.39 Aligned_cols=174 Identities=20% Similarity=0.210 Sum_probs=128.6
Q ss_pred EEEecCchhhh-hhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---h
Q 023106 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---H 151 (287)
Q Consensus 77 ~i~~~~l~~~y-~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~ 151 (287)
||+++||++.| ++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++... .
T Consensus 1 ml~~~~l~~~y~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQ----ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLEN 73 (243)
T ss_dssp CEEEEEEEECSSSSSC----SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSC
T ss_pred CEEEEEEEEEeCCCCc----eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHH
Confidence 48999999999 4444 8999999999999999999999999999999999999 9999 99999765321 1
Q ss_pred hhCCCCCCCChhHH--HHHHHHHhcCCceeec-----------cCCcc----------CCCCCCCceeccccceEEE---
Q 023106 152 ARRGAPWTFNPLLL--LNCLKNLRNQGSVYAP-----------SFDHG----------VGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-----------~~~~~----------~~~~~~~~LSgGekqRv~I--- 205 (287)
.+..+.+.+|...+ .|+.+|+.++...... ..... ..++.+.+|||||||||+|
T Consensus 74 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAra 153 (243)
T 1mv5_A 74 WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA 153 (243)
T ss_dssp CTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred HHhhEEEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHH
Confidence 22335555554322 4899999875211000 00000 0123567999999999998
Q ss_pred --ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|.++... +|++|||++.+.. |++ |++++.|++.++..
T Consensus 154 l~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 154 FLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 8999999999 456666655432 4699999998754 443 78888898888754
No 24
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.96 E-value=7.6e-32 Score=245.10 Aligned_cols=176 Identities=18% Similarity=0.183 Sum_probs=132.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
.|+++||++.|++.. .+|+||||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++.. ...
T Consensus 53 ~i~~~~vs~~y~~~~---~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~G~~i~~~~~~~~ 126 (306)
T 3nh6_A 53 RIEFENVHFSYADGR---ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDISQVTQASL 126 (306)
T ss_dssp CEEEEEEEEESSTTC---EEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC---CSEEEEEETTEETTSBCHHHH
T ss_pred eEEEEEEEEEcCCCC---ceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCcEEEECCEEcccCCHHHH
Confidence 599999999996421 28999999999999999999999999999999999999 9999 9999986532 122
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec-----------------cCCc---cCCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP-----------------SFDH---GVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-----------------~~~~---~~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|...+ .|+.+|+.++...... .+.. ....+....|||||||||+|
T Consensus 127 r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~ 206 (306)
T 3nh6_A 127 RSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL 206 (306)
T ss_dssp HHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred hcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 3334555554332 5899999886432100 0000 01134567899999999999
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|++||||| .+++.|.++... +|+||||++.+.. |++ |++++.|+++++...
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence 8999999999 455556555433 5799999999876 554 899999999998653
No 25
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.96 E-value=7.2e-32 Score=241.00 Aligned_cols=178 Identities=19% Similarity=0.229 Sum_probs=131.1
Q ss_pred EEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
||+++||++.|+ +......+|+|+||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++.....+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCHHHHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEECchHHhhh
Confidence 589999999997 21000128999999999999999999999999999999999999 9999 899997653222233
Q ss_pred CCCCCCChh-H---HHHHHHHHhcCCceeec-------------cCC-c--cCCCCCCCceeccccceEEE-----ecCC
Q 023106 155 GAPWTFNPL-L---LLNCLKNLRNQGSVYAP-------------SFD-H--GVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 155 ~~~~~~~~~-~---~~tv~e~l~~~~~~~~~-------------~~~-~--~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
.+++.+|.. . ..++.+|+.++...... .+. . ...++++.+|||||||||+| .+|+
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 158 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPD 158 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 355566653 1 26899999875321100 011 1 22467899999999999998 9999
Q ss_pred EEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+||||| .+++.|.++.+ .+|++|||++.+.. |++ |++++.|++.++..
T Consensus 159 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 159 ILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999 45566665532 24699999998765 444 77777888777653
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.96 E-value=4.4e-31 Score=233.83 Aligned_cols=172 Identities=22% Similarity=0.209 Sum_probs=121.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl--l~~~~p~~G-i~~~g~~~~~-- 149 (287)
|+||+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+ ++ |++| +.++|.++..
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~~~~~~ 73 (250)
T 2d2e_A 1 MSQLEIRDLWASIDGET----ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT---VERGEILLDGENILELS 73 (250)
T ss_dssp -CEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEECTTSC
T ss_pred CceEEEEeEEEEECCEE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEECCCCC
Confidence 45799999999998755 99999999999999999999999999999999998 77 8999 8999976421
Q ss_pred --HhhhCCCCCCCChhHH---HHHHHHHhcCCce------e-------e------ccCCccCCCCCCCc-eeccccceEE
Q 023106 150 --AHARRGAPWTFNPLLL---LNCLKNLRNQGSV------Y-------A------PSFDHGVGDPVEDD-ILVGLQHKVV 204 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~------~-------~------~~~~~~~~~~~~~~-LSgGekqRv~ 204 (287)
...+.++.+.+|...+ +++.+|+.++... . . ...+....++++.+ |||||||||+
T Consensus 74 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~ 153 (250)
T 2d2e_A 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNE 153 (250)
T ss_dssp HHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHH
T ss_pred HHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 1223344455554332 5677776543110 0 0 01111234677888 9999999999
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH----HHH----HHHhcCCCcH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ----RVL----KRHISTGKPP 253 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~----rvi----gr~i~~G~~~ 253 (287)
| .+|++||||| .+++.|.++.+. +|++|||++++.. |++ |++++.|+++
T Consensus 154 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 154 ILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 8 8999999999 456666666432 4699999998753 443 7777788776
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.95 E-value=1.6e-31 Score=236.31 Aligned_cols=173 Identities=16% Similarity=0.243 Sum_probs=125.3
Q ss_pred EEEecCchhhh--hhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---H
Q 023106 77 VVEARCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---A 150 (287)
Q Consensus 77 ~i~~~~l~~~y--~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~ 150 (287)
-|+++||++.| ++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++.. .
T Consensus 7 ~~~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPV----ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEESSTTSCE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHH
T ss_pred ceeEEEEEEEeCCCCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHH
Confidence 48999999999 3444 8999999999999999999999999999999999999 9999 8999976421 1
Q ss_pred hhhCCCCCCCChhH--HHHHHHHHhcCCceee-c---------cCC----------ccCCCCCCCceeccccceEEE---
Q 023106 151 HARRGAPWTFNPLL--LLNCLKNLRNQGSVYA-P---------SFD----------HGVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 151 ~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~-~---------~~~----------~~~~~~~~~~LSgGekqRv~I--- 205 (287)
..+..+++++|... ..|+.+|+.++..... . ... .....+.+.+|||||||||+|
T Consensus 80 ~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAra 159 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARA 159 (247)
T ss_dssp HHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHH
T ss_pred HHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHH
Confidence 11122333343321 1489999987531100 0 000 011234578999999999998
Q ss_pred --ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++... +|++|||++.+.. |++ |++++.|+++++.
T Consensus 160 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 160 LVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp HTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHH
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 8999999999 455566555332 4799999998754 443 7777888887764
No 28
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.95 E-value=4.5e-31 Score=228.63 Aligned_cols=154 Identities=16% Similarity=0.253 Sum_probs=117.0
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
.+|+++||++.|++ . +|+++||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++. ..+.
T Consensus 9 ~~l~~~~ls~~y~~-~----il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~--~~~~ 78 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPIT--KVKG 78 (214)
T ss_dssp CEEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGG--GGGG
T ss_pred ceEEEEEEEEEeCC-e----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEhh--hhcC
Confidence 37999999999987 5 9999999999999999999999999999999999999 9999 899998764 1223
Q ss_pred CCCCCCChhH---HHHHHHHHhcCCceee------------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 155 GAPWTFNPLL---LLNCLKNLRNQGSVYA------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 155 ~~~~~~~~~~---~~tv~e~l~~~~~~~~------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
.+.+.+|... .+++.+|+.++..... ..+. ... ++.+.+|||||||||+| .+|+++||
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllL 157 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVL 157 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 3444444332 2578888866421100 0011 112 67889999999999998 89999999
Q ss_pred ec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 214 DG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 214 DE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|| .+++.|.++.+ .++++|||++++..
T Consensus 158 DEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~ 198 (214)
T 1sgw_A 158 DDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD 198 (214)
T ss_dssp ESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSS
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99 45555555542 35799999988764
No 29
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.95 E-value=1e-31 Score=236.11 Aligned_cols=166 Identities=10% Similarity=0.185 Sum_probs=120.4
Q ss_pred ccEEEecCchhhhhh--hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHh
Q 023106 75 IPVVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAH 151 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~--~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~ 151 (287)
|.+|+++||++.|++ .. +|+++||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.
T Consensus 1 M~~l~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~------ 67 (237)
T 2cbz_A 1 MNSITVRNATFTWARSDPP----TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKGS------ 67 (237)
T ss_dssp -CCEEEEEEEEESCTTSCC----SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE---EEEEEEEECSC------
T ss_pred CCeEEEEEEEEEeCCCCCc----eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCE------
Confidence 446999999999973 33 8999999999999999999999999999999999999 9999 888883
Q ss_pred hhCCCCCCCChhH--HHHHHHHHhcCCceeec-------cCC---------c---cCCCCCCCceeccccceEEE-----
Q 023106 152 ARRGAPWTFNPLL--LLNCLKNLRNQGSVYAP-------SFD---------H---GVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 152 ~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~~-------~~~---------~---~~~~~~~~~LSgGekqRv~I----- 205 (287)
+.+.+|... ..++.+|+.++...... ... . ...++.+.+|||||||||+|
T Consensus 68 ----i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 143 (237)
T 2cbz_A 68 ----VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY 143 (237)
T ss_dssp ----EEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred ----EEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 222222211 25788888775321100 000 0 01246788999999999998
Q ss_pred ecCCEEeEec-----------chHHHHH---hccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVS---SMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~---~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+++.+. ++... +|++|||++.+.. |++ |++++.|+++++..
T Consensus 144 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 144 SNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 8999999999 3344442 22222 4699999988643 443 77778888887754
No 30
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.95 E-value=2.8e-31 Score=237.27 Aligned_cols=175 Identities=18% Similarity=0.140 Sum_probs=122.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl--l~~~~p~~G-i~~~g~~~~~-- 149 (287)
+++|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+ ++ |++| |.++|.++..
T Consensus 18 ~~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKA----ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLALS 90 (267)
T ss_dssp --CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEEGGGSC
T ss_pred CceEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECCcCC
Confidence 34799999999998755 99999999999999999999999999999999998 46 8899 8999986532
Q ss_pred --HhhhCCCCCCCChhH---HHHHHHHHhcCC---------c-ee-----------eccCC--ccCCCCCCC-ceecccc
Q 023106 150 --AHARRGAPWTFNPLL---LLNCLKNLRNQG---------S-VY-----------APSFD--HGVGDPVED-DILVGLQ 200 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~---~~tv~e~l~~~~---------~-~~-----------~~~~~--~~~~~~~~~-~LSgGek 200 (287)
...+.++.+.+|... .+++.+++.+.. . .. ...+. ....++++. +||||||
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHH
T ss_pred HHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHH
Confidence 111223333333321 134444443211 0 00 00111 122356676 5999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH----HHH----HHHhcCCCcH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ----RVL----KRHISTGKPP 253 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~----rvi----gr~i~~G~~~ 253 (287)
|||+| .+|++||||| .+++.|.++.+. +|++|||++++.. |++ |++++.|+++
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 250 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTT
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHH
Confidence 99998 8999999999 566677766432 4699999988742 443 7888888888
Q ss_pred HHH
Q 023106 254 DVA 256 (287)
Q Consensus 254 ~~~ 256 (287)
++.
T Consensus 251 ~~~ 253 (267)
T 2zu0_C 251 LVK 253 (267)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 31
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.95 E-value=1e-30 Score=231.89 Aligned_cols=162 Identities=14% Similarity=0.148 Sum_probs=121.4
Q ss_pred EEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
||+++||++.|+ +.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.+ +.
T Consensus 4 ~l~i~~l~~~y~~~~~----vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~----------~~ 66 (253)
T 2nq2_C 4 ALSVENLGFYYQAENF----LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEV----------YQ 66 (253)
T ss_dssp EEEEEEEEEEETTTTE----EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC---CSEEEEEE----------CS
T ss_pred eEEEeeEEEEeCCCCe----EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE----------ec
Confidence 799999999998 655 8999999999999999999999999999999999999 9999 552 11
Q ss_pred CCCCCCChhH---HHHHHHHHhcCCceee------c------------cCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 155 GAPWTFNPLL---LLNCLKNLRNQGSVYA------P------------SFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 155 ~~~~~~~~~~---~~tv~e~l~~~~~~~~------~------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.+++.+|... .+++.+|+.++..... . .+. ....++.+.+|||||||||+| .+
T Consensus 67 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 146 (253)
T 2nq2_C 67 SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASE 146 (253)
T ss_dssp CEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTT
T ss_pred cEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 2333333321 2578888877532110 0 000 123467899999999999998 89
Q ss_pred CCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|++||||| .+++.|.++.+ .+|++|||++++.. |++ |+ ++.|+++++.
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 147 CKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp CSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999 45566665543 24699999999865 443 77 7788877763
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.95 E-value=1.5e-30 Score=231.65 Aligned_cols=176 Identities=15% Similarity=0.128 Sum_probs=127.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
+|+++||++.|++.. ...+|+|+||+|++|+++||+||||||||||+++|+|+++ | +| |.++|.++.. ...
T Consensus 17 ~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i~~~~~~~~ 91 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNVNKYNRNSI 91 (260)
T ss_dssp CEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEGGGBCHHHH
T ss_pred eEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEhhhcCHHHH
Confidence 699999999997631 1238999999999999999999999999999999999998 7 79 8999987532 112
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-c-------cCC---------cc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-P-------SFD---------HG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~-------~~~---------~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|...+ .|+.+|+.++..... . ... .. ...+.+.+|||||||||+|
T Consensus 92 ~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 92 RSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp HTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred hccEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 3334444443321 488999987531100 0 000 00 0134678999999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|.++.+. +|++|||++.+.. |++ |++++.|+++++..
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 455566655433 4699999998754 443 78888888888754
No 33
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.95 E-value=4.3e-30 Score=224.67 Aligned_cols=163 Identities=12% Similarity=0.168 Sum_probs=116.4
Q ss_pred EEEecCchhhhhh--hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 77 VVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~--~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
+|+++||++.|++ .. +|+++||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.
T Consensus 6 ~l~~~~l~~~y~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~-------- 70 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGR-------- 70 (229)
T ss_dssp EEEEEEEEECSSTTSCC----SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEECSC--------
T ss_pred eEEEEEEEEEeCCCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEECCE--------
Confidence 7999999999953 33 8999999999999999999999999999999999999 9999 888883
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceeec-------cCC---------c---cCCCCCCCceeccccceEEE-----ec
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYAP-------SFD---------H---GVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-------~~~---------~---~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
+.+.+|...+ .++.+|+.++...... ... . ....+.+.+|||||||||+| .+
T Consensus 71 --i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~ 148 (229)
T 2pze_A 71 --ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 148 (229)
T ss_dssp --EEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred --EEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 2222222111 3778888775321000 000 0 01123468999999999998 89
Q ss_pred CCEEeEec-------chHHHHHh-----ccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-------GVWKDVSS-----MFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-------~~~~~l~~-----~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
|+++|||| ...+.+.+ +... +|++|||++.+.. |++ |++++.|+++++.
T Consensus 149 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 149 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999 22222322 2222 4699999998754 333 7777788877764
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.95 E-value=5.9e-31 Score=246.39 Aligned_cols=174 Identities=16% Similarity=0.215 Sum_probs=128.2
Q ss_pred cEEEecCchhhh--hhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y--~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--- 149 (287)
..|+++||+|.| ++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ ++| |.++|+++..
T Consensus 18 ~~i~~~~l~~~y~~~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~i~G~~i~~~~~ 89 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNA----ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQIDGVSWDSITL 89 (390)
T ss_dssp CCEEEEEEEEESSSSSCC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEEESSCBTTSSCH
T ss_pred CeEEEEEEEEEecCCCeE----EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC----CCeEEEECCEECCcCCh
Confidence 369999999999 4444 9999999999999999999999999999999999874 578 9999987532
Q ss_pred HhhhCCCCCCCChhHH--HHHHHHHhcCCceeecc-------CC-ccCCCCCCCc-----------eeccccceEEE---
Q 023106 150 AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYAPS-------FD-HGVGDPVEDD-----------ILVGLQHKVVI--- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~~-------~~-~~~~~~~~~~-----------LSgGekqRv~I--- 205 (287)
...++.+.++||.+.+ .++.+|+.+........ .. ....++++.+ |||||||||+|
T Consensus 90 ~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARA 169 (390)
T 3gd7_A 90 EQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARS 169 (390)
T ss_dssp HHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHH
T ss_pred HHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHH
Confidence 1123345556665432 58999997533211000 00 0123566666 99999999999
Q ss_pred --ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|+++... +|++|||++.+.. |++ |++++.|++.++..
T Consensus 170 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 170 VLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp HHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 455566655432 5799999876544 554 88888999998753
No 35
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.95 E-value=1.9e-30 Score=229.68 Aligned_cols=168 Identities=18% Similarity=0.212 Sum_probs=124.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
||+++||++. . +|+|+||+|++|++++|+||||||||||+++|+|+++ |+ | +.++|.++.. ...
T Consensus 4 ~l~~~~l~~~----~----vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~-G~i~~~g~~~~~~~~~~~ 71 (249)
T 2qi9_C 4 VMQLQDVAES----T----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GK-GSIQFAGQPLEAWSATKL 71 (249)
T ss_dssp EEEEEEEEET----T----TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CE-EEEEETTEEGGGSCHHHH
T ss_pred EEEEEceEEE----E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CC-eEEEECCEECCcCCHHHH
Confidence 6999999987 3 8999999999999999999999999999999999999 99 9 8999976532 111
Q ss_pred hCCCCCCCChh---HHHHHHHHHhcCCceeec---------cCC-ccCCCCCCCceeccccceEEE-----ecCC-----
Q 023106 153 RRGAPWTFNPL---LLLNCLKNLRNQGSVYAP---------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGN----- 209 (287)
Q Consensus 153 ~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~---------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~----- 209 (287)
+..+++.+|.. ..+++.+|+.++...... .+. ....++.+.+|||||||||+| .+|+
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~ 151 (249)
T 2qi9_C 72 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPA 151 (249)
T ss_dssp HHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTT
T ss_pred hceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCC
Confidence 12233344332 226899999875321100 011 123467899999999999998 8899
Q ss_pred --EEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 210 --YLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 210 --lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 152 ~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 152 GQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp CCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred CeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999 45666666532 24699999999865 443 7777788877764
No 36
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.94 E-value=3e-28 Score=239.47 Aligned_cols=176 Identities=20% Similarity=0.225 Sum_probs=131.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
+|+++||+++|++.. ..+|+|+||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 341 ~i~~~~v~~~y~~~~--~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~ 415 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKE--KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD---VDSGSICLDGHDVRDYKLTNL 415 (582)
T ss_pred eEEEEEEEEEcCCCC--ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEhhhCCHHHH
Confidence 699999999997421 128999999999999999999999999999999999999 9999 99999876431 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCC-c-eeecc-------CC---------c---cCCCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQG-S-VYAPS-------FD---------H---GVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~-~-~~~~~-------~~---------~---~~~~~~~~~LSgGekqRv~I---- 205 (287)
+..+.+++|.+.+ .|+.||+.++. . ..... .. . ........+||||||||++|
T Consensus 416 ~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral 495 (582)
T 3b5x_A 416 RRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL 495 (582)
T ss_pred hcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHH
Confidence 3445566665432 59999998864 1 10000 00 0 01123457899999999998
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+.+.+.++.+. ++++|||++.+.. |++ |++++.|+++++..
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999 455556655433 4799999998865 444 78888999888753
No 37
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=3.6e-29 Score=223.06 Aligned_cols=171 Identities=11% Similarity=0.055 Sum_probs=126.7
Q ss_pred EEEecCchhhhhh----hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHh
Q 023106 77 VVEARCMDEVYDA----LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~----~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~ 151 (287)
||+++||++.|++ .. +|+++||+|+ |++++|+||||||||||+++|+|++ |++| +.++|.++....
T Consensus 1 ml~~~~l~~~y~~~~~~~~----il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~ 71 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERF----SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIR 71 (263)
T ss_dssp CEEEEEEEEEEEEETTEEE----EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCS
T ss_pred CEEEEEEEEEeCCCCccce----eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchH
Confidence 4899999999976 44 8999999999 9999999999999999999999986 6789 889997653211
Q ss_pred hhCCCC-CCCChhH-HHHHHHHHhcCCcee----------eccCC-c-cCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 152 ARRGAP-WTFNPLL-LLNCLKNLRNQGSVY----------APSFD-H-GVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 152 ~~~~~~-~~~~~~~-~~tv~e~l~~~~~~~----------~~~~~-~-~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
.+..+. +.+|... .+++.+|+.+..... ...+. . ...++++.+|||||||||+| .+|++||
T Consensus 72 ~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll 151 (263)
T 2pjz_A 72 NYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVG 151 (263)
T ss_dssp CCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred HhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 122344 5555432 367888887632110 00111 1 23467899999999999998 8999999
Q ss_pred Eec-----------chHHHHHhccCCeEEEEcChHHHHH----HHH----HHHhcCCCcHHHH
Q 023106 213 LDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ----RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~----rvi----gr~i~~G~~~~~~ 256 (287)
||| .+++.|.++.+.+|++|||++++.. |++ |++++.|+++++.
T Consensus 152 LDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 152 LDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred EECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 999 5666777665555799999988754 333 6777788887775
No 38
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.93 E-value=1.2e-28 Score=242.49 Aligned_cols=177 Identities=19% Similarity=0.209 Sum_probs=132.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ..+|+|+||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 341 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~i~g~~i~~~~~~~~ 415 (587)
T 3qf4_A 341 SVSFENVEFRYFENT--DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID---PERGRVEVDELDVRTVKLKDL 415 (587)
T ss_dssp CEEEEEEEECSSSSS--CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC---CSEEEEEESSSBGGGBCHHHH
T ss_pred cEEEEEEEEEcCCCC--CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEECCEEcccCCHHHH
Confidence 599999999995421 238999999999999999999999999999999999999 9999 99999986431 11
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec-----------------cCCcc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP-----------------SFDHG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-----------------~~~~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|.+.+ .|+.||+.++...... ....+ ...+.+.+||||||||++|
T Consensus 416 r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 416 RGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp HHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred HhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 2224444443322 4889999876431100 00001 1245678999999999999
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|+++|||| .+.+.+.++... +++|||+++.+.. |++ |++++.|+++++...
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 8999999999 455556555433 4799999998865 554 899999999998653
No 39
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.93 E-value=1.7e-28 Score=241.93 Aligned_cols=175 Identities=17% Similarity=0.228 Sum_probs=129.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||++.|++.. .+|+|+||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 354 ~i~~~~v~~~y~~~~---~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~ 427 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKK---PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD---VDRGQILVDGIDIRKIKRSSL 427 (598)
T ss_dssp CEEEEEEECCSSSSS---CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEECCCCC---ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCeEEEECCEEhhhCCHHHH
Confidence 499999999997422 28999999999999999999999999999999999999 9999 99999876431 11
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec-c----CCc----cCCCCC-----------CCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP-S----FDH----GVGDPV-----------EDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-~----~~~----~~~~~~-----------~~~LSgGekqRv~I----- 205 (287)
+..+.+++|.+.+ .|+.||+.++...... . ... ...+.. ..+||||||||++|
T Consensus 428 r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 428 RSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp HHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 2224444444322 5899999886321100 0 000 000112 26899999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+.+.+.++..+ +|+|||+++.+.. |++ |++++.|+++++..
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 445555555433 4799999999876 554 89999999999864
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.93 E-value=3.4e-28 Score=239.16 Aligned_cols=176 Identities=18% Similarity=0.193 Sum_probs=129.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
+|+++||++.|++.. ..+|+|+||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 341 ~i~~~~v~~~y~~~~--~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~ 415 (582)
T 3b60_A 341 DLEFRNVTFTYPGRE--VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLASL 415 (582)
T ss_dssp CEEEEEEEECSSSSS--CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHHH
T ss_pred cEEEEEEEEEcCCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEECCEEccccCHHHH
Confidence 599999999997420 128999999999999999999999999999999999999 9999 9999976532 112
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCC-c-eeec-------cCC------------ccCCCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQG-S-VYAP-------SFD------------HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~-~-~~~~-------~~~------------~~~~~~~~~~LSgGekqRv~I---- 205 (287)
+..+.+++|.+.+ .|+.||+.++. . .... ... .........+||||||||++|
T Consensus 416 ~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral 495 (582)
T 3b60_A 416 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred HhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 2234444443322 48999998864 1 1000 000 001134567899999999998
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+.+.+.++.+. +|++|||++.+.. |++ |++++.|+++++..
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 496 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 8999999999 455556555433 4799999998754 444 78888999988754
No 41
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.93 E-value=1.6e-28 Score=241.22 Aligned_cols=176 Identities=14% Similarity=0.148 Sum_probs=130.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ..+|+|+||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 339 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~ 413 (578)
T 4a82_A 339 RIDIDHVSFQYNDNE--APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSL 413 (578)
T ss_dssp CEEEEEEEECSCSSS--CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence 499999999997521 238999999999999999999999999999999999999 9999 99999876431 12
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec-----------------cCCc---cCCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP-----------------SFDH---GVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-----------------~~~~---~~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|.+.+ .|+.||+.++...... .+.. ........+|||||||||+|
T Consensus 414 r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~ 493 (578)
T 4a82_A 414 RNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 493 (578)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred hhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHH
Confidence 2334445544322 4899999876421100 0000 01123456899999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+.+.+.++... +++||||++.+.. |++ |++++.|+++++..
T Consensus 494 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 494 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 344455554433 4799999998865 544 88899999998864
No 42
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.93 E-value=3.7e-28 Score=239.42 Aligned_cols=176 Identities=19% Similarity=0.234 Sum_probs=127.0
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~ 153 (287)
|+++||+++|++.. ...+|+|+||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 342 i~~~~v~~~y~~~~-~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~~ 417 (595)
T 2yl4_A 342 LEFKNVHFAYPARP-EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD---PASGTISLDGHDIRQLNPVWLR 417 (595)
T ss_dssp EEEEEEEEECSSCT-TSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC---CSEEEEEETTEETTTBCHHHHH
T ss_pred EEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCEEhhhCCHHHHH
Confidence 99999999997531 1238999999999999999999999999999999999999 9999 9999976532 1122
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCcee--ec------------------cCCc---cCCCCCCCceeccccceEEE---
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVY--AP------------------SFDH---GVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~--~~------------------~~~~---~~~~~~~~~LSgGekqRv~I--- 205 (287)
..+.+++|.+.+ .|+.||+.++.... .. .+.. ........+|||||||||+|
T Consensus 418 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAra 497 (595)
T 2yl4_A 418 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARA 497 (595)
T ss_dssp HSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHH
T ss_pred hceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHH
Confidence 234444443322 58999998864320 00 0000 01123458899999999998
Q ss_pred --ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+.+.+.++.+. +|++|||++.+.. |++ |++++.|+++++..
T Consensus 498 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 498 LLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp HHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC---
T ss_pred HHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 455556555433 5799999998865 444 78888899888754
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.92 E-value=1.4e-27 Score=215.57 Aligned_cols=162 Identities=10% Similarity=0.177 Sum_probs=102.3
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
++|+++||++.+ .. +|+++||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.
T Consensus 39 ~~l~~~~l~~~~--~~----vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~--------- 100 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGR--------- 100 (290)
T ss_dssp -----------C--CC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC---EEEEEEECCSC---------
T ss_pred ceEEEEEEEEcC--ce----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCE---------
Confidence 369999999864 33 8999999999999999999999999999999999999 9999 888873
Q ss_pred CCCCCCChhHH--HHHHHHHhcCCceeec-------cCC------------ccCCCCCCCceeccccceEEE-----ecC
Q 023106 155 GAPWTFNPLLL--LNCLKNLRNQGSVYAP-------SFD------------HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 155 ~~~~~~~~~~~--~tv~e~l~~~~~~~~~-------~~~------------~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
+.+.+|...+ .++.+|+. +...... ... .....+.+.+|||||||||+| .+|
T Consensus 101 -i~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p 178 (290)
T 2bbs_A 101 -ISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178 (290)
T ss_dssp -EEEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC
T ss_pred -EEEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC
Confidence 1222222111 36777776 3211000 000 001123457999999999998 899
Q ss_pred CEEeEec-----------chHHHH-HhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 209 NYLFLDG-----------GVWKDV-SSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l-~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+++|||| .+++.+ .++.. .+|++|||++.+.. |++ |++++.|+++++..
T Consensus 179 ~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999 223322 12222 24699999998754 333 77777888887743
No 44
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.91 E-value=2.8e-25 Score=202.57 Aligned_cols=190 Identities=19% Similarity=0.207 Sum_probs=129.8
Q ss_pred EEEecCchhhhhhhhhccccccccccc-----------------------cCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASN-----------------------VNVKHIVGLAGPPGAGKSTLAAEVVRRINK 133 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~-----------------------i~~GeivgIiGpNGsGKSTLlk~L~Gll~~ 133 (287)
+|++++|++.|+. +++++++. +++|+++||+||||||||||+++|+|+++
T Consensus 43 ~i~~~~v~~~y~p------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~- 115 (312)
T 3aez_A 43 QIDLLEVEEVYLP------LARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA- 115 (312)
T ss_dssp CCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH-
T ss_pred eEEeeehhhhhhh------HHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc-
Confidence 5999999999964 44444443 89999999999999999999999999998
Q ss_pred cCCCcc---ee---eCCCCH-HHHhhh------CCCCCCCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceecccc
Q 023106 134 IWPQKA---SS---FDSQDP-KEAHAR------RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 134 ~~p~~G---i~---~~g~~~-~~~~~~------~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGek 200 (287)
|..| +. .++.-. ...... .+.+..++...+...++.+.. ...+..+..|||||+
T Consensus 116 --~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~-----------~~~~~~~~~lS~G~~ 182 (312)
T 3aez_A 116 --RWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKS-----------GSDYACAPVYSHLHY 182 (312)
T ss_dssp --TSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHT-----------TCSCEEEEEEETTTT
T ss_pred --ccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCC-----------CcccCCcccCChhhh
Confidence 7644 21 111100 000000 112222222222333333321 112345678999999
Q ss_pred ceEEE-----ecCCEEeEecchH------HHHHhccCCeEEEEcChHHHHHHHHHHHhc----------------CCCcH
Q 023106 201 HKVVI-----VDGNYLFLDGGVW------KDVSSMFDEKWFIEVDLDTAMQRVLKRHIS----------------TGKPP 253 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE~~~------~~l~~~~~~~i~vtHd~~~~~~rvigr~i~----------------~G~~~ 253 (287)
||+.+ .+|++||+||... ..+.++++..|+|+||.+.+..|++.|.+. .|-+.
T Consensus 183 qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~~~~~~~~~~g~s~ 262 (312)
T 3aez_A 183 DIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSD 262 (312)
T ss_dssp EEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGSTTSTTGGGTTCCH
T ss_pred hhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccCcchhhhcccCCCH
Confidence 99976 7899999999322 357788888899999999988887766542 24444
Q ss_pred HHH----HHHHHhcCccchh-hhcccCCCCCEEEeCCC
Q 023106 254 DVA----KWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 254 ~~~----~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 286 (287)
+.+ ..+|...+.|+++ +|+|++.+||+||++..
T Consensus 263 e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~ 300 (312)
T 3aez_A 263 SQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDA 300 (312)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECT
T ss_pred HHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCC
Confidence 433 3556677889998 99999999999998653
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.90 E-value=2.8e-26 Score=242.74 Aligned_cols=177 Identities=16% Similarity=0.156 Sum_probs=132.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
.|+++||++.|++.. ...+|+|+||+|++||++||+||||||||||+++|+|+++ |++| |.++|.++.. ...
T Consensus 1030 ~i~~~~v~~~y~~~~-~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp CEEEEEEEBCCSCGG-GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC---CSEEEEESSSSCTTSSCHHHH
T ss_pred cEEEEEEEEECCCCC-CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEcccCCHHHH
Confidence 499999999997542 2238999999999999999999999999999999999999 9999 9999987643 122
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec-------------------cCCcc---CCCCCCCceeccccceEEE---
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP-------------------SFDHG---VGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-------------------~~~~~---~~~~~~~~LSgGekqRv~I--- 205 (287)
+..+.+++|+..+ .|+.+|+.++...... .+..+ ........|||||||||+|
T Consensus 1106 r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1106 RAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp TTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred HhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 3445566665432 5889999876421100 00000 0122456899999999999
Q ss_pred --ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+.+.+.+... .+|+||||++.+.. |++ |++++.|+++++..
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 34555555444 35799999999865 555 89999999998864
No 46
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.90 E-value=1.3e-26 Score=245.84 Aligned_cols=178 Identities=19% Similarity=0.186 Sum_probs=134.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
-|+++||+++|++.. ..++|+|+||+|++|+.+||+|+||||||||+++|.|++. |++| |.+||.++.. ...
T Consensus 1076 ~I~f~nVsf~Y~~~~-~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERP-EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp CEEEEEEEECCTTSC-SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSSSEEEETTEETTTBCHHHH
T ss_pred eEEEEEEEEeCCCCC-CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCCCEEEECCEEhhhCCHHHH
Confidence 499999999997542 2348999999999999999999999999999999999999 9999 9999987643 223
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-------------------ccCCccCC---CCCCCceeccccceEEE---
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-------------------PSFDHGVG---DPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-------------------~~~~~~~~---~~~~~~LSgGekqRv~I--- 205 (287)
+..+..++|++.+ -|+.+||.++..... .....+.. ......||||||||++|
T Consensus 1152 R~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1152 RSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp HTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred HhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 3445555555443 588999987632100 00011111 12345799999999998
Q ss_pred --ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|++||||| .+.+.|++++.. +|+|+|.++.+.. |++ |++++.|+++++...
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC
T ss_pred HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 8999999999 345556666554 4799999999877 666 999999999999753
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.90 E-value=4.1e-26 Score=241.48 Aligned_cols=177 Identities=19% Similarity=0.192 Sum_probs=129.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ...+|+|+||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++... ..
T Consensus 387 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~---~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD---PLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp CEEEEEEEECCSSTT-SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCCC-CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEHHhCCHHHH
Confidence 499999999997532 2238999999999999999999999999999999999999 9999 99999875431 11
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-----------------ccCCcc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-----------------PSFDHG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-----------------~~~~~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+++++|.+.+ .|+.||+.++..... ..+..+ ........|||||||||+|
T Consensus 463 r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp HHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred HhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 2224444444322 488899987542100 000001 1234567899999999999
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+.+.+..+... +|+|||+++.+.. |++ |++++.|+++++..
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 233444444333 5799999999876 544 88889999988754
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.89 E-value=6.6e-25 Score=213.53 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=109.6
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
++++++++++.|++. .|.++||+|++|+++||+||||||||||+++|+|+++ |++| +.+++..+.. ..+
T Consensus 268 ~~l~~~~l~~~~~~~-----~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~~~i~~--~~q 337 (538)
T 3ozx_A 268 TKMKWTKIIKKLGDF-----QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT---ADEGSVTPEKQILSY--KPQ 337 (538)
T ss_dssp EEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSBCCEESSCCCEEE--ECS
T ss_pred ceEEEcceEEEECCE-----EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCeeeEe--ech
Confidence 479999999999873 5778899999999999999999999999999999999 9999 7777764321 111
Q ss_pred CCCCCCChhHHHHHHHHHhcCCceee-----------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec--
Q 023106 155 GAPWTFNPLLLLNCLKNLRNQGSVYA-----------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-- 215 (287)
Q Consensus 155 ~~~~~~~~~~~~tv~e~l~~~~~~~~-----------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-- 215 (287)
.....+ ..++.+++........ ..+. ....++.+.+|||||||||+| .+|++|||||
T Consensus 338 ~~~~~~----~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT 413 (538)
T 3ozx_A 338 RIFPNY----DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS 413 (538)
T ss_dssp SCCCCC----SSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred hccccc----CCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 111111 1345555543211000 0010 124568899999999999999 8999999999
Q ss_pred ---------chHHHHHhccC---C-eEEEEcChHHHHH
Q 023106 216 ---------GVWKDVSSMFD---E-KWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ---------~~~~~l~~~~~---~-~i~vtHd~~~~~~ 240 (287)
.+++.|.++.. . +++||||++++..
T Consensus 414 ~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~ 451 (538)
T 3ozx_A 414 SYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDY 451 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 45666666542 2 4799999999986
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.89 E-value=2.4e-25 Score=216.79 Aligned_cols=165 Identities=14% Similarity=0.208 Sum_probs=115.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
.++++++|+++.|++. .|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.+ ...
T Consensus 285 ~~~l~~~~l~~~~~~~-----~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~-~~~------- 348 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-----RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKIEW-DLT------- 348 (538)
T ss_dssp CEEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBCCCCC-CCC-------
T ss_pred CeEEEEeeEEEEECCE-----EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEE-Cce-------
Confidence 3579999999999763 6889999999999999999999999999999999999 9999 654 111
Q ss_pred CCCCCCCChh---HHHHHHHHHhcC------Cc--e--eeccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEe
Q 023106 154 RGAPWTFNPL---LLLNCLKNLRNQ------GS--V--YAPSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLD 214 (287)
Q Consensus 154 ~~~~~~~~~~---~~~tv~e~l~~~------~~--~--~~~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllD 214 (287)
+.+.+|.. ..+++.+++... .. . ....+. ....++.+.+|||||||||+| .+|++||||
T Consensus 349 --i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLD 426 (538)
T 1yqt_A 349 --VAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD 426 (538)
T ss_dssp --EEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred --EEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 11111111 012333333211 00 0 000111 134578899999999999998 899999999
Q ss_pred c-----------chHHHHHhcc---C-CeEEEEcChHHHHH---HHH------HHHhcCCCcHHHHH
Q 023106 215 G-----------GVWKDVSSMF---D-EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAK 257 (287)
Q Consensus 215 E-----------~~~~~l~~~~---~-~~i~vtHd~~~~~~---rvi------gr~i~~G~~~~~~~ 257 (287)
| .+++.|.++. . .+|+||||++++.. |++ +++++.|+++++..
T Consensus 427 EPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 427 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9 4566666653 2 25799999999986 443 34445789888765
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.89 E-value=2.1e-25 Score=219.79 Aligned_cols=163 Identities=17% Similarity=0.259 Sum_probs=115.6
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
.+++++|+++.|++. .|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.+. ..
T Consensus 356 ~~l~~~~l~~~~~~~-----~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~-~~-------- 418 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF-----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKVEWD-LT-------- 418 (607)
T ss_dssp EEEEECCEEEECSSC-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBSCCCCC-CC--------
T ss_pred eEEEEeceEEEecce-----EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEEe-eE--------
Confidence 479999999999763 6889999999999999999999999999999999999 9999 6542 11
Q ss_pred CCCCCCChh---HHHHHHHHHhcC------Cc------eeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEe
Q 023106 155 GAPWTFNPL---LLLNCLKNLRNQ------GS------VYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLD 214 (287)
Q Consensus 155 ~~~~~~~~~---~~~tv~e~l~~~------~~------~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllD 214 (287)
+.+.+|.. ..+++.+++... .. +..... ....++.+.+|||||||||+| .+|++||||
T Consensus 419 -i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLD 496 (607)
T 3bk7_A 419 -VAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI-IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 496 (607)
T ss_dssp -EEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC-TTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred -EEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 11111111 012333333221 00 000111 134567899999999999998 899999999
Q ss_pred c-----------chHHHHHhcc---C-CeEEEEcChHHHHH---HHH------HHHhcCCCcHHHHH
Q 023106 215 G-----------GVWKDVSSMF---D-EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAK 257 (287)
Q Consensus 215 E-----------~~~~~l~~~~---~-~~i~vtHd~~~~~~---rvi------gr~i~~G~~~~~~~ 257 (287)
| .+++.|+++. . .+|+||||++++.. |++ |++.+.|+++++..
T Consensus 497 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 497 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9 4566666653 2 24799999999986 443 34445788888765
No 51
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.89 E-value=9.9e-26 Score=239.12 Aligned_cols=177 Identities=16% Similarity=0.206 Sum_probs=132.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
-|+++||+++|++.. ..++|+|+||+|++|+.+||+||+|||||||+++|.|+++ |++| |.++|.++... ..
T Consensus 415 ~I~~~nvsF~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~---~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 415 DITVENVHFTYPSRP-DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD---VLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp CEEEEEEEECCSSST-TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHH
T ss_pred cEEEEEeeeeCCCCC-CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc---cccCcccCCCccchhccHHHH
Confidence 499999999997542 2348999999999999999999999999999999999999 9999 99999865431 11
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-----------------ccCCccCC---CCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-----------------PSFDHGVG---DPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-----------------~~~~~~~~---~~~~~~LSgGekqRv~I----- 205 (287)
+..+.++.|.+.+ .|+.|||.++..-.. ..+..+.. ......||||||||++|
T Consensus 491 r~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~ 570 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570 (1321)
T ss_dssp HHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred hhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence 2224455554433 588999998743100 00111111 23456799999999999
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+.+.|.++... +|+|||.+..+.. +++ |++++.|+.+++..
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 8999999999 344455555443 5799999998877 555 89999999988753
No 52
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.88 E-value=4.4e-23 Score=176.91 Aligned_cols=172 Identities=30% Similarity=0.455 Sum_probs=137.1
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---cc-eeeCCCCHHHH-------hhhCCCCCCCChhHHHHHHHHH
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KA-SSFDSQDPKEA-------HARRGAPWTFNPLLLLNCLKNL 172 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~---~G-i~~~g~~~~~~-------~~~~~~~~~~~~~~~~tv~e~l 172 (287)
.++|+++||+||||||||||+++|+|++. |. .| +.++|...... ....+++..++...+...+..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~---~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 95 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS---AQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHAL 95 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH---HTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh---hcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHH
Confidence 57899999999999999999999999998 63 56 66777643211 1224577788877666777777
Q ss_pred hcCCceeeccCCccCCCCCCCceeccccceE------EEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHH
Q 023106 173 RNQGSVYAPSFDHGVGDPVEDDILVGLQHKV------VIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRH 246 (287)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv------~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~ 246 (287)
..+..+..+.++... .+|+|++|++ .|.++.++++||..|..+.+.++..++++++.+....|++.|.
T Consensus 96 ~~~~~i~~p~~d~~~------~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~ 169 (208)
T 3c8u_A 96 KHQERVIYPLFDRAR------DIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRW 169 (208)
T ss_dssp HHCSCEEEEEEETTT------TEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHH
T ss_pred hcCCceecccCCccc------cCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHH
Confidence 776656555555332 3689998765 4488888899998888888889999999999999888999888
Q ss_pred hcCCCcHHHHHHHHHhcCccchhhhcccCCCCCEEEeC
Q 023106 247 ISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKS 284 (287)
Q Consensus 247 i~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~ii~~ 284 (287)
+..|.+.+.+..++..++.|+.+++.|.+..||+||++
T Consensus 170 ~~~g~t~~~~~~~~~~~~~~~~~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 170 LDHGLNHDAAVARAQGNDLANARAIEAARLPADLTWPQ 207 (208)
T ss_dssp HHTTCCHHHHHHHHHTHHHHHHHHHHTTBCCCSEEEC-
T ss_pred HhcCCCHHHHHHHHHhccHHHHHHHHhCCCCCCEEeeC
Confidence 88898888888888878999889999999999999975
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.88 E-value=6.3e-24 Score=209.21 Aligned_cols=158 Identities=17% Similarity=0.184 Sum_probs=109.8
Q ss_pred cEEEe--------cCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-e------
Q 023106 76 PVVEA--------RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S------ 140 (287)
Q Consensus 76 ~~i~~--------~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i------ 140 (287)
.+|++ +||+++|++.. .+|+++| +|++|+++||+||||||||||+++|+|++. |++| +
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~~~---~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~---p~~G~~~~~~~~ 154 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGVNA---FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI---PNLCEDNDSWDN 154 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECSTTC---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC---CCTTTTCCCHHH
T ss_pred ceEEEecCCccccCCeEEEECCCC---eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC---CCCCccccccch
Confidence 46888 89999997641 2799999 999999999999999999999999999999 9999 4
Q ss_pred ---eeCCCCHHHH-----hhhCCCCCCCCh----hHH--HHHHHHHhcCCcee-----eccCC-ccCCCCCCCceecccc
Q 023106 141 ---SFDSQDPKEA-----HARRGAPWTFNP----LLL--LNCLKNLRNQGSVY-----APSFD-HGVGDPVEDDILVGLQ 200 (287)
Q Consensus 141 ---~~~g~~~~~~-----~~~~~~~~~~~~----~~~--~tv~e~l~~~~~~~-----~~~~~-~~~~~~~~~~LSgGek 200 (287)
.++|.++... .....+.+.++. ... .++.+++....... ...+. ....++.+.+||||||
T Consensus 155 ~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGek 234 (607)
T 3bk7_A 155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGEL 234 (607)
T ss_dssp HHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHH
T ss_pred hhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHH
Confidence 4677765432 111222222221 110 25666664321100 00111 1234678999999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|||+| .+|++||||| .+++.|+++.. .+|+||||++++..
T Consensus 235 QRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~ 293 (607)
T 3bk7_A 235 QRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDY 293 (607)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHh
Confidence 99999 9999999999 35555655533 25799999998865
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.87 E-value=9e-24 Score=205.71 Aligned_cols=155 Identities=17% Similarity=0.199 Sum_probs=104.8
Q ss_pred EEe-cCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-e---------eeCCCC
Q 023106 78 VEA-RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S---------SFDSQD 146 (287)
Q Consensus 78 i~~-~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i---------~~~g~~ 146 (287)
.++ +||+|+|++.. .+|+++| +|.+|+++||+||||||||||+|+|+|+++ |++| + .++|..
T Consensus 21 ~~~~~~ls~~yg~~~---~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~---p~~G~~~~~~~~~~~~~~g~~ 93 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNA---FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI---PNLCGDNDSWDGVIRAFRGNE 93 (538)
T ss_dssp ---CCCEEEECSTTC---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSHHHHHHHTTTST
T ss_pred hhHhcCcEEEECCcc---ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCccCcchhhhHHhhCCcc
Confidence 455 68999997641 2789999 999999999999999999999999999999 9999 4 467776
Q ss_pred HHHH---h--hhCCCCCCCChhH----H--HHHHHHHhcCCc---e----eeccCCccCCCCCCCceeccccceEEE---
Q 023106 147 PKEA---H--ARRGAPWTFNPLL----L--LNCLKNLRNQGS---V----YAPSFDHGVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 147 ~~~~---~--~~~~~~~~~~~~~----~--~tv~e~l~~~~~---~----~~~~~~~~~~~~~~~~LSgGekqRv~I--- 205 (287)
+... . ...++.+.++... . .++.+++..... . ....+. ...++++.+|||||||||+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAra 172 (538)
T 1yqt_A 94 LQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAA 172 (538)
T ss_dssp HHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCC-hhhhCChhhCCHHHHHHHHHHHH
Confidence 5431 1 1122222222110 0 144455432110 0 001111 23567899999999999999
Q ss_pred --ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+|++||||| .+++.|+++.+ .+|+||||++++..
T Consensus 173 L~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~ 223 (538)
T 1yqt_A 173 LLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDY 223 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 8999999999 35555555532 24799999998865
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.86 E-value=2.7e-24 Score=219.83 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=57.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS 144 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g 144 (287)
.++|+++||++.|++.. ..+|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++| |.++|
T Consensus 669 ~~mL~v~nLs~~Y~g~~--~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~---P~sG~I~~~~ 734 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTS--KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHE 734 (986)
T ss_dssp SEEEEEEEEEECCTTCS--SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC---CSEEEEEECT
T ss_pred CceEEEEeeEEEeCCCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEcC
Confidence 34799999999997521 128999999999999999999999999999999999999 9999 77765
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.3e-22 Score=199.72 Aligned_cols=166 Identities=14% Similarity=0.188 Sum_probs=111.2
Q ss_pred cCchhhhhhhhhccccccccccccCCC-----eEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCC
Q 023106 81 RCMDEVYDALAQRLLPTSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRG 155 (287)
Q Consensus 81 ~~l~~~y~~~~~~~~~l~~vsl~i~~G-----eivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~ 155 (287)
+++++.|++.. .+++++||++.+| |++||+||||||||||+++|+|+++ |++|..+.+..+ .+..+.
T Consensus 350 ~~~~~~y~~~~---~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~~~~~i--~~~~q~ 421 (608)
T 3j16_B 350 ASRAFSYPSLK---KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDIPKLNV--SMKPQK 421 (608)
T ss_dssp SSSCCEECCEE---EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCCCSCCE--EEECSS
T ss_pred cceeEEecCcc---cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCccCCcE--EEeccc
Confidence 67778886532 2789999999999 7899999999999999999999999 998832222111 011111
Q ss_pred CCCCCChhHHHHHHHHHhcCCc--eee--------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec----
Q 023106 156 APWTFNPLLLLNCLKNLRNQGS--VYA--------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG---- 215 (287)
Q Consensus 156 ~~~~~~~~~~~tv~e~l~~~~~--~~~--------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE---- 215 (287)
....++ .++.+++..... ... ..+. ....++.+.+|||||||||+| .+|++|||||
T Consensus 422 ~~~~~~----~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~g 497 (608)
T 3j16_B 422 IAPKFP----GTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAY 497 (608)
T ss_dssp CCCCCC----SBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred ccccCC----ccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCC
Confidence 111111 133333321100 000 0000 124567899999999999998 8999999999
Q ss_pred -------chHHHHHhcc---C-CeEEEEcChHHHHH---HHH------HHHhcCCCcHHHHHH
Q 023106 216 -------GVWKDVSSMF---D-EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 258 (287)
Q Consensus 216 -------~~~~~l~~~~---~-~~i~vtHd~~~~~~---rvi------gr~i~~G~~~~~~~~ 258 (287)
.+++.|+++. . .+++||||++++.. |++ |++++.|+|+++...
T Consensus 498 LD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 498 LDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 4555666653 2 25799999999987 554 567789999988765
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.84 E-value=4.1e-23 Score=206.05 Aligned_cols=158 Identities=17% Similarity=0.185 Sum_probs=88.2
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHH---------------------HHHHHHhcccCCCc-------c-eeeCCCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA---------------------AEVVRRINKIWPQK-------A-SSFDSQD 146 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLl---------------------k~L~Gll~~~~p~~-------G-i~~~g~~ 146 (287)
+|+||||+|++|+++||+||||||||||+ +++.|+.. |+. + +.+++..
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~---~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK---PDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-----------------CCCSEEESCCCEEEESSCC
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc---CCccceeccccceEecCch
Confidence 89999999999999999999999999998 88888887 773 3 4455544
Q ss_pred HHHHhh------h----------CCCCCCCCh-----hHHHHHHHHHhcCCceeec------------------------
Q 023106 147 PKEAHA------R----------RGAPWTFNP-----LLLLNCLKNLRNQGSVYAP------------------------ 181 (287)
Q Consensus 147 ~~~~~~------~----------~~~~~~~~~-----~~~~tv~e~l~~~~~~~~~------------------------ 181 (287)
...... . ......++. ...+++.+|+.+.......
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 321100 0 000111111 1124666776653211100
Q ss_pred cCCccCCCCCCCceeccccceEEE-----ecCC--EEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 182 SFDHGVGDPVEDDILVGLQHKVVI-----VDGN--YLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 182 ~~~~~~~~~~~~~LSgGekqRv~I-----~~p~--lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.......++++.+|||||||||+| .+|+ +||||| .+++.|+++.+ .+|+||||++++..
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~ 269 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA 269 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh
Confidence 000112467899999999999999 6777 999999 45555555543 25799999998655
Q ss_pred --HHH----------HHHhcCCCcHHHH
Q 023106 241 --RVL----------KRHISTGKPPDVA 256 (287)
Q Consensus 241 --rvi----------gr~i~~G~~~~~~ 256 (287)
|++ |++++.|+++++.
T Consensus 270 ~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 270 ADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred CCEEEEecccccccCCEEEEecCHHHHh
Confidence 332 4666778888764
No 58
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.83 E-value=5.6e-20 Score=161.47 Aligned_cols=177 Identities=18% Similarity=0.233 Sum_probs=99.7
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccceee-----CCCCHHHH-hhhCC-CC----CC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSF-----DSQDPKEA-HARRG-AP----WT 159 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~Gi~~-----~g~~~~~~-~~~~~-~~----~~ 159 (287)
+|+|+||++++|+++||+||||||||||+++|+|++....- .-++.. ........ ....+ .. ..
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~ 93 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDA 93 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGG
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCccc
Confidence 89999999999999999999999999999999998741100 001111 11111111 11111 11 11
Q ss_pred CChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE----ecCCEEeEecch---HHHHHhccCCeEEEE
Q 023106 160 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI----VDGNYLFLDGGV---WKDVSSMFDEKWFIE 232 (287)
Q Consensus 160 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I----~~p~lLllDE~~---~~~l~~~~~~~i~vt 232 (287)
++...+...++.+.. .....+..||+||+||+.+ .+|+++|+||.. ...+.++++.+|+++
T Consensus 94 ~~~~~~~~~L~~l~~------------~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~ 161 (245)
T 2jeo_A 94 FDNDLMHRTLKNIVE------------GKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVD 161 (245)
T ss_dssp BCHHHHHHHHHHHHT------------TCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHHHHTTCSEEEEEE
T ss_pred ccHHHHHHHHHHHHC------------CCCeecccccccccCccCceEEecCCCEEEEeCccccccHHHHHhcCeEEEEE
Confidence 122222333333321 1234567899999999843 678999999921 245666666666554
Q ss_pred cChHHHHHHHHHHHhcCCCcHHHHHHHHHhcCccchh-hhcccCCCCCEEEeC
Q 023106 233 VDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 284 (287)
Q Consensus 233 Hd~~~~~~rvigr~i~~G~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~ 284 (287)
.+.+....|.+.+.+..|.+.+.+...+...+.+..+ ++.|.+..||+||++
T Consensus 162 th~~~~~~r~~~r~~~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~ 214 (245)
T 2jeo_A 162 TDSDVRLSRRVLRDVRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPR 214 (245)
T ss_dssp CCHHHHHHHHHHHHTC---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEES
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcC
Confidence 4434444455556557787777666777766666665 899999999999954
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.82 E-value=3.7e-21 Score=189.41 Aligned_cols=151 Identities=15% Similarity=0.155 Sum_probs=96.8
Q ss_pred CchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-e-----------eeCCCCHHH
Q 023106 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-----------SFDSQDPKE 149 (287)
Q Consensus 82 ~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i-----------~~~g~~~~~ 149 (287)
|++++|+... ..|++++ .+.+|+++||+||||||||||+|+|+|+++ |++| + .+.|.....
T Consensus 82 ~~~~~Y~~~~---~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~---P~~G~i~~~~~~~~~~~~~~g~~~~~ 154 (608)
T 3j16_B 82 HVTHRYSANS---FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPEWQEIIKYFRGSELQN 154 (608)
T ss_dssp TEEEECSTTS---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSSCHHHHHHHTTTSTHHH
T ss_pred CeEEEECCCc---eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC---CCCceEecccchhhhhheecChhhhh
Confidence 5667776543 1455555 689999999999999999999999999999 9999 6 344444322
Q ss_pred Hh---hhCCC-----CCCCCh-hH-----HHHHHHHHhcCCce---------eeccCCccCCCCCCCceeccccceEEE-
Q 023106 150 AH---ARRGA-----PWTFNP-LL-----LLNCLKNLRNQGSV---------YAPSFDHGVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 150 ~~---~~~~~-----~~~~~~-~~-----~~tv~e~l~~~~~~---------~~~~~~~~~~~~~~~~LSgGekqRv~I- 205 (287)
.. ....+ ++..+. .. ..++.+++...... ..... ....++.+.+|||||||||+|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LSgGe~Qrv~iA 233 (608)
T 3j16_B 155 YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQL-ENVLKRDIEKLSGGELQRFAIG 233 (608)
T ss_dssp HHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTC-TGGGGSCTTTCCHHHHHHHHHH
T ss_pred hhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCC-cchhCCChHHCCHHHHHHHHHH
Confidence 11 01111 111111 00 01222222211000 00011 123467899999999999998
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~ 240 (287)
.+|++||||| .+++.|+++... +|+||||++++..
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~ 286 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDY 286 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHH
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 8999999999 456667766553 4799999999975
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.82 E-value=2.4e-22 Score=205.50 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=108.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGA 156 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~~ 156 (287)
.|...|+++.|++.. +|+|+||+|.+|+++||+||||||||||+|+|+|-. . .| .+.... ..+
T Consensus 435 ~L~~~~ls~~yg~~~----iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~----i-~g-----~~~~~~---~~~ 497 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKI----LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ----V-DG-----FPTQEE---CRT 497 (986)
T ss_dssp EEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTC----S-TT-----CCCTTT---SCE
T ss_pred eeEEeeEEEEECCEE----eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----c-CC-----Cccccc---eeE
Confidence 466669999998765 999999999999999999999999999999999621 0 11 110000 000
Q ss_pred CCCCCh----hHHHHHHHHHhcCCc---------eeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec---
Q 023106 157 PWTFNP----LLLLNCLKNLRNQGS---------VYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG--- 215 (287)
Q Consensus 157 ~~~~~~----~~~~tv~e~l~~~~~---------~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE--- 215 (287)
.+.+|. ...+++.+++.+... +....+.....++++.+|||||||||+| .+|++|||||
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs 577 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTN 577 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTT
T ss_pred EEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 111111 111456666653100 0000111112357889999999999998 8999999999
Q ss_pred --------chHHHHHhccCC-eEEEEcChHHHHH---HHH----HHHh-cCCCcHHHHH
Q 023106 216 --------GVWKDVSSMFDE-KWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 257 (287)
Q Consensus 216 --------~~~~~l~~~~~~-~i~vtHd~~~~~~---rvi----gr~i-~~G~~~~~~~ 257 (287)
.+++.|.+ ... +|++|||++++.. |++ |+++ ..|++.++..
T Consensus 578 ~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 578 HLDTVNVAWLVNYLNT-CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 45566666 333 4699999999976 443 6665 4788877754
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.80 E-value=7e-21 Score=185.19 Aligned_cols=152 Identities=11% Similarity=0.101 Sum_probs=96.6
Q ss_pred cCchhhhhhhhhccccccccccccC-CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-e-----------eeCCCCH
Q 023106 81 RCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-----------SFDSQDP 147 (287)
Q Consensus 81 ~~l~~~y~~~~~~~~~l~~vsl~i~-~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i-----------~~~g~~~ 147 (287)
++++.+||... ++-..|.+. +|+++||+||||||||||+|+|+|++. |++| + .+.|.++
T Consensus 3 ~~~~~~~~~~~-----f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~---p~~G~i~~~~~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 3 GEVIHRYKVNG-----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII---PNFGDPNSKVGKDEVLKRFRGKEI 74 (538)
T ss_dssp CCEEEESSTTS-----CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC---CCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred CCCceecCCCc-----eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCccccccchhhHHhhcCCeeH
Confidence 35677887653 444445444 899999999999999999999999999 9999 5 4666655
Q ss_pred HHHh---hh--CC----CCCCCChhHH--HHHHHHHhcCCc---ee--eccCC-ccCCCCCCCceeccccceEEE-----
Q 023106 148 KEAH---AR--RG----APWTFNPLLL--LNCLKNLRNQGS---VY--APSFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 148 ~~~~---~~--~~----~~~~~~~~~~--~tv~e~l~~~~~---~~--~~~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
.... .. .+ ..+..+...+ .++.+++..... .. ...+. ....++.+.+|||||||||+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~ 154 (538)
T 3ozx_A 75 YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLL 154 (538)
T ss_dssp HHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 3211 01 11 1111111100 122333221100 00 00011 124567899999999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ 240 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~ 240 (287)
.+|++||||| .+++.|+++.+. +|+||||++++..
T Consensus 155 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~ 202 (538)
T 3ozx_A 155 READVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDY 202 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHh
Confidence 8999999999 355666665433 4799999998875
No 62
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.79 E-value=7.1e-20 Score=166.40 Aligned_cols=202 Identities=19% Similarity=0.242 Sum_probs=124.8
Q ss_pred EEEecCchhhhhhhhhcccccccccccc-------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNV-------------------NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ 137 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i-------------------~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~ 137 (287)
+|++++|++.|+. +++++++.+ .+|+++||+||||||||||+++|+|++.. .|+
T Consensus 37 ~i~~~~v~~~y~~------~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~-~~~ 109 (308)
T 1sq5_A 37 DLSLEEVAEIYLP------LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR-WPE 109 (308)
T ss_dssp TCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT-STT
T ss_pred ccchHhHHHHHHH------HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh-CCC
Confidence 5899999999953 789999988 99999999999999999999999998741 146
Q ss_pred cc-eee---CCCCHHH-HhhhCCCCCCC------ChhHHHHHHHHHhcCCc-eeeccCCccCCCCCCCceeccccceEEE
Q 023106 138 KA-SSF---DSQDPKE-AHARRGAPWTF------NPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 138 ~G-i~~---~g~~~~~-~~~~~~~~~~~------~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~LSgGekqRv~I 205 (287)
+| +.+ +|..... .....++...+ +.......+..+..+.. +..|.++....++.......-....+.|
T Consensus 110 ~G~i~vi~~d~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivI 189 (308)
T 1sq5_A 110 HRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILI 189 (308)
T ss_dssp CCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEE
T ss_pred CCeEEEEecCCccCcHHHHHhCCEeecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCcccccceecCCCCEEE
Confidence 77 777 7754311 11122221212 22222333333333333 4455555444332221100001123344
Q ss_pred ecCCEEeEec-----c-hHHHHHhccCCeEEEEcChHHHHHHHHHHHhc----------------CCCcHHH----HHHH
Q 023106 206 VDGNYLFLDG-----G-VWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS----------------TGKPPDV----AKWR 259 (287)
Q Consensus 206 ~~p~lLllDE-----~-~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~----------------~G~~~~~----~~~~ 259 (287)
.++.+++.++ . -...+.++++..|+|+.|.+....|++.|.+. .|-+.+. +..+
T Consensus 190 lEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q 269 (308)
T 1sq5_A 190 LEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTL 269 (308)
T ss_dssp EECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHH
T ss_pred ECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhccCCchhhhcccCCCHHHHHHHHHHH
Confidence 4444443331 0 00145677888899999999988888866532 2555553 3445
Q ss_pred HHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 260 IEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 260 ~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
|...++|++. |++|.+..||+||++.
T Consensus 270 ~~~~~~~~~~~~i~~~~~~AD~vI~n~ 296 (308)
T 1sq5_A 270 WKEINWLNLKQNILPTRERASLILTKS 296 (308)
T ss_dssp HHHTHHHHHHHTTGGGGGGCSEEEEEC
T ss_pred HHhccHHHHHHHcccccccCcEEEEeC
Confidence 5667888887 8999999999999865
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.2e-21 Score=187.16 Aligned_cols=141 Identities=9% Similarity=0.043 Sum_probs=97.7
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc---eeeCCCCHHHHhh
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA---SSFDSQDPKEAHA 152 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G---i~~~g~~~~~~~~ 152 (287)
+|++++||++.|+ ++||++++|++++|+||||||||||+|+|+|++. |++| +.++|. .
T Consensus 117 ~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~---p~~G~~pI~vdg~-~----- 177 (460)
T 2npi_A 117 TMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL---KFNAYQPLYINLD-P----- 177 (460)
T ss_dssp THHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH---HHHCCCCEEEECC-T-----
T ss_pred chhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc---ccCCceeEEEcCC-c-----
Confidence 4689999999985 5889999999999999999999999999999999 9988 778873 1
Q ss_pred hCCCCCCCChhH------HHHHHHHHhcCCcee-ec-cCC--------ccCCC-CCCCceeccccceEEE-------ecC
Q 023106 153 RRGAPWTFNPLL------LLNCLKNLRNQGSVY-AP-SFD--------HGVGD-PVEDDILVGLQHKVVI-------VDG 208 (287)
Q Consensus 153 ~~~~~~~~~~~~------~~tv~e~l~~~~~~~-~~-~~~--------~~~~~-~~~~~LSgGekqRv~I-------~~p 208 (287)
++++.+.+|... .+++.+|+ ++.... .. ... .+..+ ..+.+|||||+|||+| .+|
T Consensus 178 ~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p 256 (460)
T 2npi_A 178 QQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDP 256 (460)
T ss_dssp TSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cCCeeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCc
Confidence 334445555431 14566666 543221 00 000 00000 1167899999999977 789
Q ss_pred CE----EeEec-ch----------HHHHHhccCCeEEEEcChH
Q 023106 209 NY----LFLDG-GV----------WKDVSSMFDEKWFIEVDLD 236 (287)
Q Consensus 209 ~l----LllDE-~~----------~~~l~~~~~~~i~vtHd~~ 236 (287)
++ ||||| +. .+.+.++-...++|+||.+
T Consensus 257 ~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tviiVth~~~ 299 (460)
T 2npi_A 257 QVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSET 299 (460)
T ss_dssp HHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCEEEEECCSS
T ss_pred ccCcceEEEeCCcccccChhHHHHHHHHHHhCCCEEEEEccCc
Confidence 99 99999 32 2223333234679999987
No 64
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.78 E-value=7.9e-21 Score=189.54 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=52.5
Q ss_pred CCCCCCceeccccceEEE-----ecC---CEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH--HHH
Q 023106 188 GDPVEDDILVGLQHKVVI-----VDG---NYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL 243 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I-----~~p---~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~--rvi 243 (287)
.++++.+|||||||||+| .+| ++||||| .+++.|.++.+ .+|+||||++++.. |++
T Consensus 537 ~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~ 616 (670)
T 3ux8_A 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYII 616 (670)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEE
Confidence 467899999999999998 444 5999999 45555655543 25799999998754 432
Q ss_pred ----------HHHhcCCCcHHHH
Q 023106 244 ----------KRHISTGKPPDVA 256 (287)
Q Consensus 244 ----------gr~i~~G~~~~~~ 256 (287)
|++++.|+++++.
T Consensus 617 ~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 617 DLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp EEESSSGGGCCEEEEEECHHHHH
T ss_pred EecCCcCCCCCEEEEecCHHHHH
Confidence 6788899998874
No 65
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.77 E-value=2.2e-19 Score=163.89 Aligned_cols=201 Identities=22% Similarity=0.272 Sum_probs=138.4
Q ss_pred cCchhhhhhhhhccccccccccccCCCe------EEEEECCCCCCHHHHHHHHHHHhcccCCCcc----eeeCCCCH--H
Q 023106 81 RCMDEVYDALAQRLLPTSALASNVNVKH------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA----SSFDSQDP--K 148 (287)
Q Consensus 81 ~~l~~~y~~~~~~~~~l~~vsl~i~~Ge------ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G----i~~~g~~~--~ 148 (287)
+.+++.|++.. .|.+++..+..+. ++||+||||||||||+++|.+++.. .|++| +..||... .
T Consensus 64 rll~~~~~~~~----~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~-~~~~~~v~~i~~D~f~~~~~ 138 (321)
T 3tqc_A 64 RLLSFYVTARQ----TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR-WPDHPNVEVITTDGFLYSNA 138 (321)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT-STTCCCEEEEEGGGGBCCHH
T ss_pred HHHHHhhcchH----HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc-cCCCCeEEEEeecccccchh
Confidence 34566666665 7888888887776 9999999999999999999999861 12344 33455321 1
Q ss_pred H-----HhhhCCCCCCCChhHHHHHHHHHhcCC-ceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecc------
Q 023106 149 E-----AHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG------ 216 (287)
Q Consensus 149 ~-----~~~~~~~~~~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~------ 216 (287)
. ...+.|.+..++...+.+.++.+..+. .+..|.|+....++.+...-.-....+.|.++.+++.|+.
T Consensus 139 ~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~ 218 (321)
T 3tqc_A 139 KLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQ 218 (321)
T ss_dssp HHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSS
T ss_pred hhhhHHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccc
Confidence 1 123456778888888889999999887 6777888776655432211111233455555555555541
Q ss_pred hHHHHHhccCCeEEEEcChHHHHHHHHHHHhc-C---------------CCcHH----HHHHHHHhcCccchh-hhcccC
Q 023106 217 VWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS-T---------------GKPPD----VAKWRIEYNDRPNAE-LIMKSK 275 (287)
Q Consensus 217 ~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~-~---------------G~~~~----~~~~~~~~~~~~~~~-~i~~~~ 275 (287)
-+..+.++++..|+|+.+.+....|++.|... . +-+.+ .+...|...+.|+++ +|+|++
T Consensus 219 ~~~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr 298 (321)
T 3tqc_A 219 LQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYK 298 (321)
T ss_dssp CCCCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGG
T ss_pred hhhhhhhhcCeEEEEECCHHHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCc
Confidence 12236778888999999999999988866532 1 33332 345667778899997 999999
Q ss_pred CCCCEEEeCCC
Q 023106 276 KNADLVIKSID 286 (287)
Q Consensus 276 ~~ad~ii~~~~ 286 (287)
.+||+||++..
T Consensus 299 ~~Adlil~~g~ 309 (321)
T 3tqc_A 299 NRAQLILEKAA 309 (321)
T ss_dssp GGCSEEEEECT
T ss_pred cCceEEEecCC
Confidence 99999998654
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.76 E-value=7.9e-21 Score=163.52 Aligned_cols=138 Identities=14% Similarity=0.063 Sum_probs=77.7
Q ss_pred hhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChh
Q 023106 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPL 163 (287)
Q Consensus 85 ~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~ 163 (287)
|.|++.. +|+++ ++|+++||+||||||||||+++|+|+ + |++| +............+..+++.+|..
T Consensus 8 k~~g~~~----~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~---p~~G~I~~~~~~~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 8 KTLGQKH----YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A---LQSKQVSRIILTRPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp CSHHHHH----HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H---HHTTSCSEEEEEECSCCTTCCCCSSCC--
T ss_pred CCHhHHH----HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C---CcCCeeeeEEecCCchhhhcceEEecCCH
Confidence 4677766 89985 79999999999999999999999999 9 9999 532100000001233466677653
Q ss_pred HHHHHHHHH-hcCCcee--ecc-CCccCCCCCCCceeccccceEEE-----ecCCEEeEec-------chHHHHHhccC-
Q 023106 164 LLLNCLKNL-RNQGSVY--APS-FDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-------GVWKDVSSMFD- 226 (287)
Q Consensus 164 ~~~tv~e~l-~~~~~~~--~~~-~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-------~~~~~l~~~~~- 226 (287)
.+|+ .+..... ... ............ ..||||||+| .+|++||||| .+++.|.++..
T Consensus 76 -----~enl~~~~~~~~~~~~~~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~~~~~l~~~l~~l~~g 149 (208)
T 3b85_A 76 -----NEKIDPYLRPLHDALRDMVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNTTPAQMKMFLTRLGFG 149 (208)
T ss_dssp ---------CTTTHHHHHHHTTTSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGCCHHHHHHHHTTBCTT
T ss_pred -----HHHHHHHHHHHHHHHHHhccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccccHHHHHHHHHHhcCC
Confidence 3333 2210000 000 000000000011 2399999988 8999999999 45666666622
Q ss_pred CeEEEEcChHHHHH
Q 023106 227 EKWFIEVDLDTAMQ 240 (287)
Q Consensus 227 ~~i~vtHd~~~~~~ 240 (287)
..+++|||++++..
T Consensus 150 ~tiivtHd~~~~~~ 163 (208)
T 3b85_A 150 SKMVVTGDITQVDL 163 (208)
T ss_dssp CEEEEEEC------
T ss_pred CEEEEECCHHHHhC
Confidence 23459999998865
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.71 E-value=4.8e-18 Score=141.28 Aligned_cols=115 Identities=12% Similarity=0.055 Sum_probs=70.6
Q ss_pred ccccccCCCeEEEEECCCCCCHHHHHH------------HHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHH
Q 023106 99 ALASNVNVKHIVGLAGPPGAGKSTLAA------------EVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLL 165 (287)
Q Consensus 99 ~vsl~i~~GeivgIiGpNGsGKSTLlk------------~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~ 165 (287)
|+||++++|++++|+||||||||||++ .+.|++. ++.| ..+.+... ...
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~---~~~~~~~~~~~~~---------------~~~ 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMS---DDENDQTVTGAAF---------------DVL 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHC---SSTTCGGGHHHHH---------------HHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhc---CcccchhhHHHHH---------------HHH
Confidence 689999999999999999999999999 5555554 4433 11111000 000
Q ss_pred -HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEecc-----------------------
Q 023106 166 -LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDGG----------------------- 216 (287)
Q Consensus 166 -~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE~----------------------- 216 (287)
......+..+..... + .....|+|++||+.| .+|.+++|||+
T Consensus 63 ~~~~~~~~~~g~~~~~--------~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~ 133 (171)
T 4gp7_A 63 HYIVSKRLQLGKLTVV--------D-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRK 133 (171)
T ss_dssp HHHHHHHHHTTCCEEE--------E-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHH
T ss_pred HHHHHHHHhCCCeEEE--------E-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHH
Confidence 011111111111110 0 223359999999988 89999999991
Q ss_pred hHHHHHhccC-------CeEEEEcChHHHHH
Q 023106 217 VWKDVSSMFD-------EKWFIEVDLDTAMQ 240 (287)
Q Consensus 217 ~~~~l~~~~~-------~~i~vtHd~~~~~~ 240 (287)
....+.+++. ..|++|||++++..
T Consensus 134 ~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 134 HTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 2233333322 24799999999865
No 68
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.70 E-value=1.7e-17 Score=152.60 Aligned_cols=137 Identities=27% Similarity=0.461 Sum_probs=111.1
Q ss_pred hhhCCCCCCCChhHHHHHHHHHhcC-----------------------------CceeeccCCccCCCCCCCceeccccc
Q 023106 151 HARRGAPWTFNPLLLLNCLKNLRNQ-----------------------------GSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~~tv~e~l~~~-----------------------------~~~~~~~~~~~~~~~~~~~LSgGekq 201 (287)
..++|.|+.|+...+...++.|..+ ..+..|.|+....++.+...-.-...
T Consensus 181 ~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~P~yD~~~~d~~~~~~~v~~~~ 260 (359)
T 2ga8_A 181 HKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFT 260 (359)
T ss_dssp HTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCEEEEEEETTTTEEEEEEEEECTTC
T ss_pred hccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceEeeccccCccCCCCCCceEecCCC
Confidence 4467888999988877777766554 34567888877766655544443446
Q ss_pred eEEEecCCEEeEecchHHHHHhccC-----CeEEEEcChHHHHHHHHHHHhcCCC--cHHHHHHHHHhcCccchhhhccc
Q 023106 202 KVVIVDGNYLFLDGGVWKDVSSMFD-----EKWFIEVDLDTAMQRVLKRHISTGK--PPDVAKWRIEYNDRPNAELIMKS 274 (287)
Q Consensus 202 Rv~I~~p~lLllDE~~~~~l~~~~~-----~~i~vtHd~~~~~~rvigr~i~~G~--~~~~~~~~~~~~~~~~~~~i~~~ 274 (287)
++.|.++.++|+++.-|..+.++++ ..|||+.|.+...+|++.|.+..|. +.+.+..++..++.||.++|+|+
T Consensus 261 ~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~~Gl~~s~eea~~r~~~~d~pN~~~I~~~ 340 (359)
T 2ga8_A 261 RIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKFRSNDLLNGRDIDNH 340 (359)
T ss_dssp CEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHCTTTSSHHHHHT
T ss_pred CEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhccCCCCCHHHHHHHHHhcCchhhHhHhhc
Confidence 8888999888888767788888888 5789999999999999999998898 78888888889999999999999
Q ss_pred CCCCCEEEeCCCC
Q 023106 275 KKNADLVIKSIDI 287 (287)
Q Consensus 275 ~~~ad~ii~~~~~ 287 (287)
+.+||+|+.+.|+
T Consensus 341 ~~~ad~i~~~~~~ 353 (359)
T 2ga8_A 341 LIKVDNIVHIRND 353 (359)
T ss_dssp BCCCTTEEEEECC
T ss_pred CCCCCEEEEecCC
Confidence 9999999987654
No 69
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.68 E-value=4.1e-16 Score=133.02 Aligned_cols=166 Identities=22% Similarity=0.278 Sum_probs=106.7
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcce------eeCCC--CHHHH-hhhCCCCCCCChhHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS------SFDSQ--DPKEA-HARRGAPWTFNPLLLLNCLKNLRN 174 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi------~~~g~--~~~~~-~~~~~~~~~~~~~~~~tv~e~l~~ 174 (287)
.++|+++||+||||||||||+++|+|++. |.-++ ..... .+... ....+.+..++...+...++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~---~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG---ERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLR 79 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG---GGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHc
Confidence 46899999999999999999999999987 42221 11111 11111 111111222333333444444444
Q ss_pred CCceeeccCCccCCCCCCCceecccc----ce-----EEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHH
Q 023106 175 QGSVYAPSFDHGVGDPVEDDILVGLQ----HK-----VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKR 245 (287)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~LSgGek----qR-----v~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr 245 (287)
...+.. ++..+|+|++ || +.+.+|.++++||+ +..+++.+++++.+.+....|.+.+
T Consensus 80 ~~~~~~----------~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~----~~~~~d~~i~ld~~~~~~~~r~l~r 145 (211)
T 3asz_A 80 GLPVEM----------PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKE----LRDLMDLKVFVDADADERFIRRLKR 145 (211)
T ss_dssp TCCEEE----------CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHH----HHTTCSEEEEEECCHHHHHHHHHHH
T ss_pred CCCcCC----------CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHH----HHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 333222 3445666653 33 44588888888853 4556778899999999887777766
Q ss_pred Hh-cCCCcHHHHHHHHHhcCccchh-hhcccCCCCCEEEeCCC
Q 023106 246 HI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 246 ~i-~~G~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 286 (287)
.. ..|.+...+...+...+.+.+. ++.+.+..||+||++..
T Consensus 146 ~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~~ 188 (211)
T 3asz_A 146 DVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGG 188 (211)
T ss_dssp HHHHSCCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEESTT
T ss_pred HHHHhCCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCCC
Confidence 54 4687777777777777778777 89999999999998753
No 70
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.67 E-value=5.7e-18 Score=159.10 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=34.5
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++++++|++.+| +++|+||||||||||+++|.+++.
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999 999999999999999999999875
No 71
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.67 E-value=4.2e-18 Score=173.27 Aligned_cols=44 Identities=27% Similarity=0.380 Sum_probs=39.3
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~ 128 (287)
++|++++++. . +|+||||+|++|+++||+|+||||||||+++|+
T Consensus 628 ~~L~v~~l~~-----~----~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 628 RWLEVVGARE-----H----NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CEEEEEEECS-----S----SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEEecCcc-----c----ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4799999863 2 799999999999999999999999999999864
No 72
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.65 E-value=6.9e-18 Score=172.24 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=39.3
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~ 128 (287)
++|++++++. . +|+||||+|++|+++||+|+||||||||+++|+
T Consensus 646 ~~L~v~~l~~-----~----~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 646 RQLTVVGARE-----H----NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SEEEEEEECS-----T----TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ceEEEecCcc-----c----cccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4799999863 2 789999999999999999999999999999854
No 73
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.65 E-value=1.6e-17 Score=168.18 Aligned_cols=48 Identities=21% Similarity=0.316 Sum_probs=42.6
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHH-HHHHhc
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAE-VVRRIN 132 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~-L~Gll~ 132 (287)
++|+++++++ . +|+||||+|++|+++||+|+||||||||+++ |+|++.
T Consensus 501 ~~L~v~~l~~-----~----~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~ 549 (842)
T 2vf7_A 501 GWLELNGVTR-----N----NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALA 549 (842)
T ss_dssp CEEEEEEEEE-----T----TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHH
T ss_pred ceEEEEeeee-----c----ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHH
Confidence 4799999974 2 7899999999999999999999999999997 888763
No 74
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.63 E-value=2.6e-17 Score=151.01 Aligned_cols=138 Identities=10% Similarity=0.070 Sum_probs=93.5
Q ss_pred ecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCC
Q 023106 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPW 158 (287)
Q Consensus 80 ~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~ 158 (287)
++++++ | .. ++++++|.+++|++++|+||||||||||+++|+|+++ |++| +.++|... ...+.
T Consensus 151 ~~~v~f-y--~~----~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e------~~~~~ 214 (330)
T 2pt7_A 151 YNLLDN-K--EQ----AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEE------IVFKH 214 (330)
T ss_dssp TTTSTT-H--HH----HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCC------CCCSS
T ss_pred cCchhh-H--HH----HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeec------ccccc
Confidence 667777 7 33 7899999999999999999999999999999999999 9999 78887531 00000
Q ss_pred CCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec----chHHHHHhccCC--
Q 023106 159 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG----GVWKDVSSMFDE-- 227 (287)
Q Consensus 159 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE----~~~~~l~~~~~~-- 227 (287)
.. ..+.. +. . |||+||++| .+|+++++|| ++++.+..+...
T Consensus 215 -~~--------------~~i~~--~~--------g---gg~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~~~~~g~~ 266 (330)
T 2pt7_A 215 -HK--------------NYTQL--FF--------G---GNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHK 266 (330)
T ss_dssp -CS--------------SEEEE--EC--------B---TTBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHHHHHTTCC
T ss_pred -ch--------------hEEEE--Ee--------C---CChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHHHHhcCCC
Confidence 00 00000 00 0 899999988 8999999999 455555555432
Q ss_pred -eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHHHHH
Q 023106 228 -KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKWRIE 261 (287)
Q Consensus 228 -~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~~~~ 261 (287)
+++++|+.+.... |++ |.....+-+.+.+.....
T Consensus 267 tvi~t~H~~~~~~~~dri~~l~~g~~~~~~~~~~~i~~~i~ 307 (330)
T 2pt7_A 267 GTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFK 307 (330)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHTSGGGTTSCHHHHHHHHH
T ss_pred EEEEEEcccHHHHHhhhheehhcCCcccCCCCHHHHHHHHH
Confidence 4789999884432 444 111122445555554443
No 75
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.62 E-value=1.2e-17 Score=170.37 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=53.8
Q ss_pred CCCCCCceeccccceEEE-----e---cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH--HHH
Q 023106 188 GDPVEDDILVGLQHKVVI-----V---DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL 243 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I-----~---~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~--rvi 243 (287)
..+.+.+|||||+|||.| . +|.+||||| .+++.|.++.+ .+|+||||++++.. |++
T Consensus 799 lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIi 878 (916)
T 3pih_A 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHII 878 (916)
T ss_dssp TTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 356889999999999998 3 357999999 45555555543 25799999998865 543
Q ss_pred ----------HHHhcCCCcHHHHH
Q 023106 244 ----------KRHISTGKPPDVAK 257 (287)
Q Consensus 244 ----------gr~i~~G~~~~~~~ 257 (287)
|++++.|+++++..
T Consensus 879 vLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 879 DLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp EEESSSGGGCCEEEEEESHHHHHS
T ss_pred EecCCCCCCCCEEEEEcCHHHHHh
Confidence 57889999999853
No 76
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.58 E-value=3.5e-18 Score=162.27 Aligned_cols=151 Identities=13% Similarity=0.027 Sum_probs=101.1
Q ss_pred cEEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC---HHHH
Q 023106 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD---PKEA 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~---~~~~ 150 (287)
++++++++++.|+ +.. +|+++ |+|.+|++++|+||||||||||+++|+|+.. |+.| +.++|+. +...
T Consensus 130 ~~l~~~~v~~~~~tg~~----vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~---~~~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVR----AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR---ADVIVVGLIGERGREVKDF 201 (438)
T ss_dssp CTTTSCCCCSBCCCSCH----HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCCHHHHHHH
T ss_pred CceEEeccceecCCCce----EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEeceecHHHHHH
Confidence 3589999999997 444 89999 9999999999999999999999999999999 9999 7888983 4321
Q ss_pred --------hhhCCCCCCCCh----hHHHHHHHHHhcCCceeeccCCcc--CCCCCCCceeccccceEEE--ecCCE-EeE
Q 023106 151 --------HARRGAPWTFNP----LLLLNCLKNLRNQGSVYAPSFDHG--VGDPVEDDILVGLQHKVVI--VDGNY-LFL 213 (287)
Q Consensus 151 --------~~~~~~~~~~~~----~~~~tv~e~l~~~~~~~~~~~~~~--~~~~~~~~LSgGekqRv~I--~~p~l-Lll 213 (287)
...+.+.+.+|. ...+++.+++.+....... .... ..-.....||+|| |||+| .+|++ --|
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~-~~~~v~~~ld~l~~lS~g~-qrvslAl~~p~~t~gl 279 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-RGQHVLLIMDSLTRYAMAQ-REIALAIGEPPATKGY 279 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-TTCEEEEEEECHHHHHHHH-HHHHHHTTCCCCSSSC
T ss_pred HHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHhHHHHHHHH-HHHHHHhCCCcccccC
Confidence 122333444442 1226777776653322110 0000 0001256789999 89888 66653 445
Q ss_pred ec----chHHHHHhccC-----C-------eEEEEcChH
Q 023106 214 DG----GVWKDVSSMFD-----E-------KWFIEVDLD 236 (287)
Q Consensus 214 DE----~~~~~l~~~~~-----~-------~i~vtHd~~ 236 (287)
|. .+.+.+.++.. . ++++|||++
T Consensus 280 D~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~ 318 (438)
T 2dpy_A 280 PPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ 318 (438)
T ss_dssp CTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC
T ss_pred CHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc
Confidence 55 44555555544 2 247789996
No 77
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.57 E-value=2.3e-17 Score=147.23 Aligned_cols=126 Identities=13% Similarity=0.140 Sum_probs=71.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHH---HHHHHHHhcCCceeecc-C
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS-F 183 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~-~ 183 (287)
.+||+||||||||||+++|+|++. |++| +.++|.++........+.+.+|...+ +++.+++.++....... +
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~---~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV---SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 689999999999999999999999 9999 88888765322222334455554432 56777776654332110 0
Q ss_pred C-------ccCCCCCCCceeccccceEEE--ecCCEEeEec----------chHHHHHhccCCeEEEEcChHHH
Q 023106 184 D-------HGVGDPVEDDILVGLQHKVVI--VDGNYLFLDG----------GVWKDVSSMFDEKWFIEVDLDTA 238 (287)
Q Consensus 184 ~-------~~~~~~~~~~LSgGekqRv~I--~~p~lLllDE----------~~~~~l~~~~~~~i~vtHd~~~~ 238 (287)
. ....+..+.+|||||+||+.+ ....++++|| .+++.+.+. ..+|+|.|..+.+
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGS
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccC
Confidence 0 011234677899999999988 4456999998 344455444 3356777776644
No 78
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.57 E-value=7.5e-16 Score=139.52 Aligned_cols=149 Identities=13% Similarity=0.118 Sum_probs=88.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC-CCHH--HHhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS-QDPK--EAHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g-~~~~--~~~~ 152 (287)
+|+++||++.|+ .. +|+++||+|++|++++|+||||||||||+++|+|++ +| |+..+ +... ....
T Consensus 101 ~i~~~~vs~~y~-~~----vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~~~v~q~~~lf~~ti 169 (305)
T 2v9p_A 101 FFNYQNIELITF-IN----ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVLSFANHKSHFWLASL 169 (305)
T ss_dssp HHHHTTCCHHHH-HH----HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEECGGGTTSGGGGGGG
T ss_pred eEEEEEEEEEcC-hh----hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEEEEecCccccccccH
Confidence 488999999998 44 899999999999999999999999999999999997 46 44322 2110 0000
Q ss_pred hC-CCCCCCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceE--EEecCCEEe---EecchHHHHHhccC
Q 023106 153 RR-GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV--VIVDGNYLF---LDGGVWKDVSSMFD 226 (287)
Q Consensus 153 ~~-~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv--~I~~p~lLl---lDE~~~~~l~~~~~ 226 (287)
.. .+.+..+.. ..+.+.+... ..... + ...||||||||. .+.+|++|| ||......+..+
T Consensus 170 ~~~ni~~~~~~~--~~~~~~i~~~-------L~~gl-d--g~~LSgGqkQRARAll~~p~iLlTs~LD~~~~~~i~~l-- 235 (305)
T 2v9p_A 170 ADTRAALVDDAT--HACWRYFDTY-------LRNAL-D--GYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYL-- 235 (305)
T ss_dssp TTCSCEEEEEEC--HHHHHHHHHT-------TTGGG-G--TCCEECCCSSCCCCEECCCCEEEEESSCSTTCGGGGGG--
T ss_pred HHHhhccCcccc--HHHHHHHHHH-------hHccC-C--ccCcCHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHH--
Confidence 10 111111100 0112222210 00011 1 678999999982 238999998 443222222222
Q ss_pred CeEEEEcChHHHHH--HHH---HHHhcCCCcHHH
Q 023106 227 EKWFIEVDLDTAMQ--RVL---KRHISTGKPPDV 255 (287)
Q Consensus 227 ~~i~vtHd~~~~~~--rvi---gr~i~~G~~~~~ 255 (287)
+|++..+.. +++ |++++.|+++++
T Consensus 236 -----tH~~~~~~~aD~ivl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 236 -----HSRVQTFRFEQPCTDESGEQPFNITDADW 264 (305)
T ss_dssp -----TTTEEEEECCCCCCCC---CCCCCCHHHH
T ss_pred -----hCCHHHHHhCCEEEEeCCEEEEeCCHHHH
Confidence 454443221 222 788889999888
No 79
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.57 E-value=2.8e-16 Score=134.26 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=71.5
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHH---HHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLL---LNCLKN 171 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~---~tv~e~ 171 (287)
++.| .+|++|++++|+||||||||||+++|+|+++ ...+ +.+.+..... ....++.+.||.... +++.++
T Consensus 11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~---~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~~~ 84 (207)
T 1znw_A 11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP---NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQGE 84 (207)
T ss_dssp ----------CCCEEEEECSTTSSHHHHHHHHHHHST---TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHTTC
T ss_pred CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC---ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhcCC
Confidence 6777 6899999999999999999999999999985 3222 1111211111 112456667765433 333333
Q ss_pred HhcCC------ceee-cc----------------CC----ccCCCCCCCceeccccceEEEecCCEEeEecc--------
Q 023106 172 LRNQG------SVYA-PS----------------FD----HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-------- 216 (287)
Q Consensus 172 l~~~~------~~~~-~~----------------~~----~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~-------- 216 (287)
+.... ..+. +. .+ ....++++..|| +.+.+|++++|||.
T Consensus 85 l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS------~l~~~p~~~~LDep~~~l~~~~ 158 (207)
T 1znw_A 85 LLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT------VFLAPPSWQDLQARLIGRGTET 158 (207)
T ss_dssp EEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE------EEEECSCHHHHHHHHHTTSCSC
T ss_pred ceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE------EEEECCCHHHHHHHHHhcCCCC
Confidence 32110 0000 00 00 001134556666 56699999999993
Q ss_pred -------hHHHHHhccC----CeEEEEcChHHHHH
Q 023106 217 -------VWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 217 -------~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+++.+.++.. ..+++|||++++..
T Consensus 159 d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~ 193 (207)
T 1znw_A 159 ADVIQRRLDTARIELAAQGDFDKVVVNRRLESACA 193 (207)
T ss_dssp HHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHH
Confidence 2223333321 35799999999975
No 80
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.56 E-value=2.3e-15 Score=129.94 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=38.6
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH----hhhCCCCCCCChhHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA----HARRGAPWTFNPLLL 165 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~----~~~~~~~~~~~~~~~ 165 (287)
.|+||||+|++|++++|+||||||||||+++|+|++ | | +.+ |.+.... ....++.+.|+....
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~----p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF----P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTI 79 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS----T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHH
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC----C--CcEEE-eecccCCCCCcccccCCeEEECCHHH
Confidence 689999999999999999999999999999999975 5 6 666 6543211 112346666766543
No 81
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.56 E-value=1.2e-15 Score=138.30 Aligned_cols=133 Identities=14% Similarity=0.161 Sum_probs=89.1
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--------Hh-hhCCCCCCCChh--
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--------AH-ARRGAPWTFNPL-- 163 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--------~~-~~~~~~~~~~~~-- 163 (287)
.+.++||++.+|++++|+||||||||||+++|+|++. |++| +.+.|.++.. .+ .+.++++.+|..
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~ 165 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK 165 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--C
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCc
Confidence 3467899999999999999999999999999999999 9989 8888876421 11 133566555533
Q ss_pred --HHHHHHHHHhcCC----cee-eccCCc-cCCCCCCCceeccccceEEE-----ecCC--EEeEec----chHHHHHhc
Q 023106 164 --LLLNCLKNLRNQG----SVY-APSFDH-GVGDPVEDDILVGLQHKVVI-----VDGN--YLFLDG----GVWKDVSSM 224 (287)
Q Consensus 164 --~~~tv~e~l~~~~----~~~-~~~~~~-~~~~~~~~~LSgGekqRv~I-----~~p~--lLllDE----~~~~~l~~~ 224 (287)
...++.+++.+.. ... ...... ...++++.+|| +||++| .+|+ +|+||. +....+.++
T Consensus 166 ~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLDptsglD~~~~~~~~ 242 (302)
T 3b9q_A 166 AKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREF 242 (302)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHHHHH
Confidence 2367888886531 110 111111 12235677889 788877 6899 999996 223334333
Q ss_pred c----CCeEEEEcC
Q 023106 225 F----DEKWFIEVD 234 (287)
Q Consensus 225 ~----~~~i~vtHd 234 (287)
. -.++++||.
T Consensus 243 ~~~~g~t~iiiThl 256 (302)
T 3b9q_A 243 NEVVGITGLILTKL 256 (302)
T ss_dssp HHHTCCCEEEEECC
T ss_pred HHhcCCCEEEEeCC
Confidence 2 235799994
No 82
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.54 E-value=2e-17 Score=152.72 Aligned_cols=168 Identities=9% Similarity=-0.000 Sum_probs=101.2
Q ss_pred cEEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 76 ~~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
++++++++++.|+ +.. +|+++ |+|.+|+++||+||||||||||+++|+|+.. |+.| +.+.|++.......
T Consensus 44 ~~i~~~~l~~~~~tg~~----ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~---~~~g~i~~~G~~~~ev~~~ 115 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVR----AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS---ADIIVLALIGERGREVNEF 115 (347)
T ss_dssp CSTTCCCCCSEECCSCH----HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCCHHHHHHH
T ss_pred CCeeecccceecCCCCE----EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEecccHHHHHHH
Confidence 4689999999997 444 89999 9999999999999999999999999999999 9999 67788764332111
Q ss_pred ----------CCCCCCC--ChhHH--HHHHHHHh-cCCceeeccCCccCCCCCCCceeccccceEEE--ecCCE-EeEec
Q 023106 154 ----------RGAPWTF--NPLLL--LNCLKNLR-NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI--VDGNY-LFLDG 215 (287)
Q Consensus 154 ----------~~~~~~~--~~~~~--~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I--~~p~l-LllDE 215 (287)
..+.+.+ +.... ..+..+.. ..........+-...-..+..||+|| |+|++ .+|.+ --+|.
T Consensus 116 i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~lal~~p~~t~Gldp 194 (347)
T 2obl_A 116 LALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLASGEPDVRGGFPP 194 (347)
T ss_dssp HTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHHTTCCCCBTTBCH
T ss_pred HHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHHcCCCCcccCCCH
Confidence 0011111 11111 11111111 10000000000000002567889999 89887 67764 56776
Q ss_pred ----chHHHHHhccC---C-------eEEEEcChHHHHH-HHH----HHHhcCCCc
Q 023106 216 ----GVWKDVSSMFD---E-------KWFIEVDLDTAMQ-RVL----KRHISTGKP 252 (287)
Q Consensus 216 ----~~~~~l~~~~~---~-------~i~vtHd~~~~~~-rvi----gr~i~~G~~ 252 (287)
.+++.+.++.. . ++++|||++...- +++ |+++.+|+.
T Consensus 195 ~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~~i~d~v~~i~dG~Ivl~~~l 250 (347)
T 2obl_A 195 SVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIVLTREL 250 (347)
T ss_dssp HHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCCHHHHHHHHHCSEEEEBCHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCChhhhheEEeeCcEEEEeCCH
Confidence 45556666542 2 2377799873322 443 455444433
No 83
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.53 E-value=1.4e-16 Score=133.69 Aligned_cols=120 Identities=12% Similarity=0.115 Sum_probs=66.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHhcCCceeeccCCc-cC
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDH-GV 187 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~-~~ 187 (287)
+++|+||||||||||+++|+|++. +.-.|.... ..........+++.++.. +..+++ +....+.. ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~~--~~~~~~~~~~ig~~~~~~---~~~~~~-----~~~~~~~~~~~ 69 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWTE--EVRDPETKKRTGFRIITT---EGKKKI-----FSSKFFTSKKL 69 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEEE--EEC------CCEEEEEET---TCCEEE-----EEETTCCCSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEhh--hhccccccceeEEEeecC---cHHHHH-----HHhhcCCcccc
Confidence 689999999999999999999986 111232110 010001112233333332 111111 00001111 12
Q ss_pred CCCCCCceeccccceEEE----------ecCCEEeEec--c-------hHHHHHhcc---CC-eEEEE---cChHHHHH
Q 023106 188 GDPVEDDILVGLQHKVVI----------VDGNYLFLDG--G-------VWKDVSSMF---DE-KWFIE---VDLDTAMQ 240 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I----------~~p~lLllDE--~-------~~~~l~~~~---~~-~i~vt---Hd~~~~~~ 240 (287)
.++++..|||||+||+.| .+|+++|||| + ..+.+.+++ .. +++++ ||++++..
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKE 148 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHH
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHH
Confidence 356778899999999754 4899999999 2 223333332 23 46777 48777764
No 84
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.52 E-value=3.1e-15 Score=123.05 Aligned_cols=63 Identities=17% Similarity=0.138 Sum_probs=55.5
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK 148 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~ 148 (287)
++.+++++.|++.. +++++||++++|++++|+||||||||||+|+|+|++ |++| +.++|.++.
T Consensus 8 ~~~~~~~~~~g~~~----~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l----~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 8 IPDEFSMLRFGKKF----AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI----GHQGNVKSPTYTLV 71 (158)
T ss_dssp ECSHHHHHHHHHHH----HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT----TCCSCCCCCTTTCE
T ss_pred cCCHHHHHHHHHHH----HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC----CCCCeEEECCEeee
Confidence 45567899998776 899999999999999999999999999999999987 5678 888888763
No 85
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.51 E-value=6e-16 Score=150.18 Aligned_cols=151 Identities=10% Similarity=0.116 Sum_probs=95.7
Q ss_pred EEEecCchhhhhhhhhcccccccccc-ccCCCeEEEEECCCCCCHHHHHHH--HHHHhcccCCCcc-eeeCCCCHHHH--
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAE--VVRRINKIWPQKA-SSFDSQDPKEA-- 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl-~i~~GeivgIiGpNGsGKSTLlk~--L~Gll~~~~p~~G-i~~~g~~~~~~-- 150 (287)
+++.+++.+..++.. +|++++| .|++|++++|+||||||||||+++ ++|+++ |++| ++++|.+....
T Consensus 12 ~~~~~~~~~~~~g~~----~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~---~~~g~i~v~g~~~~~~~~ 84 (525)
T 1tf7_A 12 NSEHQAIAKMRTMIE----GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE---FDEPGVFVTFEETPQDII 84 (525)
T ss_dssp --CCSSCCEECCCCT----THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HCCCEEEEESSSCHHHHH
T ss_pred CccccccccccCCch----hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEEEEeCCHHHHH
Confidence 577777766655555 9999999 999999999999999999999999 789998 8888 88998874322
Q ss_pred hhhCCCCCCCChhHHHHHHHHHhcCCceeeccCCc---------cCCCCCCCceeccccceEEEecCCEEe----Eec--
Q 023106 151 HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDH---------GVGDPVEDDILVGLQHKVVIVDGNYLF----LDG-- 215 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~---------~~~~~~~~~LSgGekqRv~I~~p~lLl----lDE-- 215 (287)
.....+++.+|.... ..++.... ........ ...++.+.+||+||+|||.|-+|-.++ +|.
T Consensus 85 ~~~~~~g~~~q~~~~---~~~l~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~ 160 (525)
T 1tf7_A 85 KNARSFGWDLAKLVD---EGKLFILD-ASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVV 160 (525)
T ss_dssp HHHGGGTCCHHHHHH---TTSEEEEE-CCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHH
T ss_pred HHHHHcCCChHHhhc---cCcEEEEe-cCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHH
Confidence 122335556654321 11121100 00000000 011345678899999999886654332 354
Q ss_pred --chHHHHHhccC---CeEEEEcChHHH
Q 023106 216 --GVWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 216 --~~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
.+++.+..+.+ .+|++||+++++
T Consensus 161 ~~~l~~ll~~l~~~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 161 RRELFRLVARLKQIGATTVMTTERIEEY 188 (525)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECSSSS
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence 34444444322 246999999885
No 86
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.49 E-value=3.8e-17 Score=153.79 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=44.1
Q ss_pred cccccccccCCCe--------------------EEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 96 PTSALASNVNVKH--------------------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 96 ~l~~vsl~i~~Ge--------------------ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
+|+++||+|++|+ ++||+||||||||||+|+|+|+++ |++| +.++|.+.
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~---p~~GsI~~~g~~~ 107 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEV 107 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT---TSTTSCCCCC---
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC---ccCceEEECCeec
Confidence 7999999999999 999999999999999999999999 9999 77887654
No 87
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.48 E-value=9.1e-15 Score=135.28 Aligned_cols=131 Identities=14% Similarity=0.168 Sum_probs=88.0
Q ss_pred cccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--------Hh-hhCCCCCCCCh----h
Q 023106 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--------AH-ARRGAPWTFNP----L 163 (287)
Q Consensus 98 ~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--------~~-~~~~~~~~~~~----~ 163 (287)
..+||++++|++++|+||||||||||+++|+|++. |++| +.+.|.++.. .+ .+.++++.++. .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc---ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 46899999999999999999999999999999999 9888 8888876421 11 23455555543 2
Q ss_pred HHHHHHHHHhcCC----cee-eccCCc-cCCCCCCCceeccccceEEE-----ecCC--EEeEec----chHHHHHhcc-
Q 023106 164 LLLNCLKNLRNQG----SVY-APSFDH-GVGDPVEDDILVGLQHKVVI-----VDGN--YLFLDG----GVWKDVSSMF- 225 (287)
Q Consensus 164 ~~~tv~e~l~~~~----~~~-~~~~~~-~~~~~~~~~LSgGekqRv~I-----~~p~--lLllDE----~~~~~l~~~~- 225 (287)
...++.+++.+.. ... ...... ...++++.+|| +||++| .+|. +|+||. +....+..+.
T Consensus 225 p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLDpttglD~~~~~~~~~~ 301 (359)
T 2og2_A 225 AATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNE 301 (359)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHHHHHHH
Confidence 3367888876531 111 111111 12235677888 788876 6899 999996 2333333332
Q ss_pred ---CCeEEEEcC
Q 023106 226 ---DEKWFIEVD 234 (287)
Q Consensus 226 ---~~~i~vtHd 234 (287)
-.++++||.
T Consensus 302 ~~g~t~iiiThl 313 (359)
T 2og2_A 302 VVGITGLILTKL 313 (359)
T ss_dssp HTCCCEEEEESC
T ss_pred hcCCeEEEEecC
Confidence 235799994
No 88
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.46 E-value=3.8e-13 Score=121.07 Aligned_cols=168 Identities=17% Similarity=0.203 Sum_probs=105.6
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----cc-e-eeCCC--CH---HHH---------hhhCCCCCCCCh
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KA-S-SFDSQ--DP---KEA---------HARRGAPWTFNP 162 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~-----~G-i-~~~g~--~~---~~~---------~~~~~~~~~~~~ 162 (287)
-.++.++||+|++|||||||++.|.+++. +. .+ + ..|+. +. ... ....+.+..++.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~---~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~ 104 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM---EKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDM 104 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH---HHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh---hcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHH
Confidence 45789999999999999999999999997 42 12 3 34442 11 111 112345777777
Q ss_pred hHHHHHHHHHhcC------CceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEecc-------h-------
Q 023106 163 LLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDGG-------V------- 217 (287)
Q Consensus 163 ~~~~tv~e~l~~~------~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE~-------~------- 217 (287)
..+...++.+..+ .....+. +...+||||+||+.+ .+|+++|+||. .
T Consensus 105 ~~l~~~l~~l~~g~~t~~~~~v~~p~--------y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~~~~~~~~ 176 (290)
T 1odf_A 105 KLLQEVLNTIFNNNEHPDQDTVVLPK--------YDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPILQGIENND 176 (290)
T ss_dssp HHHHHHHHHHTC------CCEEEECC--------EETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCCSCTTTCS
T ss_pred HHHHHHHHHhhccCccccCcceeecc--------CccccCCccccccccccceEcCCCEEEEeCccccCCccchhhhhcc
Confidence 7777777777665 2222222 446789999998532 38999999991 1
Q ss_pred ---------HHH-------HHhccCCe---EEEEc-ChHHHHHHHHHH--H-hc-C--CCcHHHHHHHHHhcCccchh-h
Q 023106 218 ---------WKD-------VSSMFDEK---WFIEV-DLDTAMQRVLKR--H-IS-T--GKPPDVAKWRIEYNDRPNAE-L 270 (287)
Q Consensus 218 ---------~~~-------l~~~~~~~---i~vtH-d~~~~~~rvigr--~-i~-~--G~~~~~~~~~~~~~~~~~~~-~ 270 (287)
.+. +.+++|.. |+|.. +.+.+.++.+.| . ++ . |.+.+.+. .+...++|.++ |
T Consensus 177 ~~~~~l~~~n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~-~~~~~~~p~y~~~ 255 (290)
T 1odf_A 177 LLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVH-AFVDRYMPSYKLY 255 (290)
T ss_dssp SSCTTHHHHHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHH-HHHHTTHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHH-HHHHHhcchHHHH
Confidence 011 34446666 99988 555555535543 2 22 3 77776664 44456777554 3
Q ss_pred -------hcccCCCCCEEEeC
Q 023106 271 -------IMKSKKNADLVIKS 284 (287)
Q Consensus 271 -------i~~~~~~ad~ii~~ 284 (287)
+.|.+ +||++|+.
T Consensus 256 ~~~~~~~~~~~~-~adlvl~~ 275 (290)
T 1odf_A 256 LNDFVRSESLGS-IATLTLGI 275 (290)
T ss_dssp HHHHHHHTCSSS-SEEEEEEE
T ss_pred hHHHHHhccCCC-CCCEEEEE
Confidence 44555 89999974
No 89
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.44 E-value=4.5e-14 Score=128.76 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=34.9
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
|+++| -+.|+ +++++++.+| +.+|+||||||||||+++|..++
T Consensus 6 L~i~n-fr~~~---------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 6 LYLKG-FKSFG---------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEEES-BTTBC---------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred EEEeC-ceeec---------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 77788 35553 2456778889 99999999999999999999765
No 90
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.42 E-value=6.5e-14 Score=121.12 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=70.7
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--Ccc-eeeCCCCHHHHhhhCCCCCCCChhHHH---HH----HHH
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKA-SSFDSQDPKEAHARRGAPWTFNPLLLL---NC----LKN 171 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p--~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~~---tv----~e~ 171 (287)
-..++|++++|+||||||||||+++|+|+++ | ..| +.+.+.++... ...++.+.|+....+ ++ +++
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~---p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQP---LYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSC---TTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCC---CCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHH
Confidence 4578999999999999999999999999987 6 456 66766654221 234577777765432 22 222
Q ss_pred HhcCCceeeccCCccCCCCCCCceeccccceE--EEecCCEEeEec--chHHHHHhccCC---eEEEEcChHHHHHHHH
Q 023106 172 LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV--VIVDGNYLFLDG--GVWKDVSSMFDE---KWFIEVDLDTAMQRVL 243 (287)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv--~I~~p~lLllDE--~~~~~l~~~~~~---~i~vtHd~~~~~~rvi 243 (287)
+.+....+ |-.++.+ .+..|.++|||= .....+.+.+.. +++++||++.+..|+.
T Consensus 87 ~~~~~~~y-----------------g~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl~ 148 (219)
T 1s96_A 87 AEVFGNYY-----------------GTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLR 148 (219)
T ss_dssp EEETTEEE-----------------EEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHH
T ss_pred HHHHhccC-----------------CCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEECCCHHHHHHHHH
Confidence 22211111 1011111 124467777773 334444444433 3588899999987764
No 91
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.38 E-value=3.1e-15 Score=135.40 Aligned_cols=143 Identities=9% Similarity=0.038 Sum_probs=56.5
Q ss_pred cCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHH-hcccCCCcceeeCCCCHHHHhhhCCCCCC
Q 023106 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQDPKEAHARRGAPWT 159 (287)
Q Consensus 81 ~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl-l~~~~p~~Gi~~~g~~~~~~~~~~~~~~~ 159 (287)
+||++.|+++. ++++++|+| +|+|+||+|||||+++|.|. +. |++|+.++|.++........+...
T Consensus 2 ~~l~~~~~~~~----~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~---~~~gi~~~g~~~~~t~~~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY---PERVISGAAEKIERTVQIEASTVE 68 (301)
T ss_dssp --------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEE
T ss_pred CCCcceECCEE----EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc---CCCCcccCCcccCCcceEeeEEEE
Confidence 47899998877 999999987 99999999999999999997 66 888866666544221111112222
Q ss_pred CChhH---HHHHHHHHhcCCceee-ccCCc------cCCCCCCCceeccccceEEEecC-CEEeEecch--------HHH
Q 023106 160 FNPLL---LLNCLKNLRNQGSVYA-PSFDH------GVGDPVEDDILVGLQHKVVIVDG-NYLFLDGGV--------WKD 220 (287)
Q Consensus 160 ~~~~~---~~tv~e~l~~~~~~~~-~~~~~------~~~~~~~~~LSgGekqRv~I~~p-~lLllDE~~--------~~~ 220 (287)
++... .++++++..++..... ..+.. ...+.++.++|||+|||+.+... .++++||+. .+.
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~ 148 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAF 148 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHH
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHH
Confidence 22111 1233333332211100 00000 00124677899999999876322 288888831 233
Q ss_pred HHhccCC----eEEEEcChH
Q 023106 221 VSSMFDE----KWFIEVDLD 236 (287)
Q Consensus 221 l~~~~~~----~i~vtHd~~ 236 (287)
+..+... .|+.+||+.
T Consensus 149 l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 149 MKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHhcCCEEEEEEeCCCC
Confidence 4444332 236679974
No 92
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.38 E-value=7.6e-14 Score=121.23 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=43.8
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHH--HHhcccCCCcc-eeeCCCC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV--RRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~--Gll~~~~p~~G-i~~~g~~ 146 (287)
.++++++++..|..... ++.+ .|++|++++|+||||||||||+++|+ |++. +..+ +++.+..
T Consensus 5 ~~~~~~~i~tg~~~lD~---~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~---~~~~~~~~~~~~ 69 (251)
T 2ehv_A 5 AYQPVRRVKSGIPGFDE---LIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE---YGEPGVFVTLEE 69 (251)
T ss_dssp ---CCCEECCSCTTTGG---GTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHH---HCCCEEEEESSS
T ss_pred cccccceeecCCHhHHH---HhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEEccC
Confidence 35778888777754321 2322 68899999999999999999999999 7745 5555 6666654
No 93
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.36 E-value=2e-13 Score=141.34 Aligned_cols=134 Identities=13% Similarity=0.074 Sum_probs=78.5
Q ss_pred EEEecC-----chhhh-hhhhhccccccccccccCC-------CeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeC
Q 023106 77 VVEARC-----MDEVY-DALAQRLLPTSALASNVNV-------KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (287)
Q Consensus 77 ~i~~~~-----l~~~y-~~~~~~~~~l~~vsl~i~~-------GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~ 143 (287)
+|++++ |++.| ++.. +++|++|++.+ |++++|+||||||||||+|+| |++. +..
T Consensus 750 ~l~i~~~rHP~l~~~~~~~~~----v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~---~~a----- 816 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFFGDDF----IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA---VMA----- 816 (1022)
T ss_dssp CEEEEEECCCC------CCCC----CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH---HHH-----
T ss_pred eEEEEeccccEEEEEecCCce----EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH---HHh-----
Confidence 689999 99999 4444 89999999987 999999999999999999999 9886 311
Q ss_pred CCCHHHHhhhCCCCCCCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec---
Q 023106 144 SQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG--- 215 (287)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE--- 215 (287)
..| .++++....+++.+++.. .... ..........+|+++++ +++ .+|.++||||
T Consensus 817 ---------qiG-~~Vpq~~~~l~v~d~I~~-----rig~-~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~ 879 (1022)
T 2o8b_B 817 ---------QMG-CYVPAEVCRLTPIDRVFT-----RLGA-SDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGR 879 (1022)
T ss_dssp ---------TTT-CCEESSEEEECCCSBEEE-----ECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTT
T ss_pred ---------hee-EEeccCcCCCCHHHHHHH-----HcCC-HHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCC
Confidence 001 022222111122222211 0000 01111234567777665 333 7899999999
Q ss_pred ---------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 216 ---------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ---------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.++..+..+.+ .++|+||+++++..
T Consensus 880 Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~ 917 (1022)
T 2o8b_B 880 GTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVED 917 (1022)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHH
Confidence 13444555432 25799999999875
No 94
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.36 E-value=2e-13 Score=126.71 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=31.6
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++++++++.+| +++|+||||||||||+.+|+..+.
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 566788999999 788999999999999999997754
No 95
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.33 E-value=1.2e-13 Score=139.15 Aligned_cols=113 Identities=14% Similarity=0.097 Sum_probs=67.9
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHhc
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRN 174 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~ 174 (287)
.+++|+||+ |++++|+||||||||||+|+|+|+.. .+..|..+... ...++..++....+++.++
T Consensus 567 ~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~--~~~~G~~vpa~-------~~~i~~v~~i~~~~~~~d~--- 631 (765)
T 1ewq_A 567 FVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL--LAQVGSFVPAE-------EAHLPLFDGIYTRIGASDD--- 631 (765)
T ss_dssp CCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH--HHTTTCCBSSS-------EEEECCCSEEEEECCC------
T ss_pred eEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh--hcccCceeehh-------ccceeeHHHhhccCCHHHH---
Confidence 388999999 99999999999999999999999863 04556222110 0112222221111122222
Q ss_pred CCceeeccCCccCCCCCCCceeccccceEEE-------ecCCEEeEecc---------------hHHHHHhccCCeEEEE
Q 023106 175 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-------VDGNYLFLDGG---------------VWKDVSSMFDEKWFIE 232 (287)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-------~~p~lLllDE~---------------~~~~l~~~~~~~i~vt 232 (287)
....+|+|+++++.+ .+|+++||||. +++.+.+.-..++++|
T Consensus 632 ----------------l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~T 695 (765)
T 1ewq_A 632 ----------------LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFAT 695 (765)
T ss_dssp -------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred ----------------HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 223356777766544 69999999993 2223333111257999
Q ss_pred cChHHH
Q 023106 233 VDLDTA 238 (287)
Q Consensus 233 Hd~~~~ 238 (287)
||.++.
T Consensus 696 H~~~l~ 701 (765)
T 1ewq_A 696 HYFELT 701 (765)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 998876
No 96
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.32 E-value=9.6e-13 Score=119.21 Aligned_cols=126 Identities=17% Similarity=0.122 Sum_probs=79.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH------HH---hhhCCCCCCCChh---HHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK------EA---HARRGAPWTFNPL---LLLNCLKNL 172 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~------~~---~~~~~~~~~~~~~---~~~tv~e~l 172 (287)
+|++++|+||||||||||+++|+|++. |++| +.+.|.++. .. ..+.++++.+|.. ...++.+++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~---~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 799999999999999999999999999 9999 888887642 11 1234566666643 236777777
Q ss_pred hcCCce--eeccCC-ccCCC---CCCCceeccccceEEE-----ecCC--EEeEec----chHHHHHhcc---C-CeEEE
Q 023106 173 RNQGSV--YAPSFD-HGVGD---PVEDDILVGLQHKVVI-----VDGN--YLFLDG----GVWKDVSSMF---D-EKWFI 231 (287)
Q Consensus 173 ~~~~~~--~~~~~~-~~~~~---~~~~~LSgGekqRv~I-----~~p~--lLllDE----~~~~~l~~~~---~-~~i~v 231 (287)
...... .....+ .+..+ ..+.+|| +||++| .+|. ++.||. .+++.+..+. . .++++
T Consensus 178 ~~~~~~~~d~~llDt~G~~~~~~~~~~eLs---~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iiv 254 (304)
T 1rj9_A 178 QAMKARGYDLLFVDTAGRLHTKHNLMEELK---KVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIV 254 (304)
T ss_dssp HHHHHHTCSEEEECCCCCCTTCHHHHHHHH---HHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHhCCCCEEEecCCCCCCchHHHHHHHH---HHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 643110 000011 11111 2334454 677765 6787 788897 3444444432 2 35899
Q ss_pred EcChHH
Q 023106 232 EVDLDT 237 (287)
Q Consensus 232 tHd~~~ 237 (287)
||+...
T Consensus 255 Th~d~~ 260 (304)
T 1rj9_A 255 TKLDGT 260 (304)
T ss_dssp ECTTSS
T ss_pred ECCccc
Confidence 999654
No 97
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.30 E-value=9.1e-14 Score=142.08 Aligned_cols=120 Identities=12% Similarity=0.070 Sum_probs=71.6
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHhc
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRN 174 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~ 174 (287)
.+++|++|++++|++++|+||||||||||+|+|+++.- .+..|..+.... .. ++........+.+.
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~--~aq~g~~vpa~~-----~~--i~~~d~i~~~ig~~----- 726 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI--MAQIGSYVPAEE-----AT--IGIVDGIFTRMGAA----- 726 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH--HHHHTCCBSSSE-----EE--EECCSEEEEEC--------
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH--HhhcCccccchh-----hh--hhHHHHHHHhCChH-----
Confidence 38899999999999999999999999999999987643 011221111000 00 00000000000011
Q ss_pred CCceeeccCCccCCCCCCCceeccccceEEE----ecCCEEeEec-----------chH-HHHHhccC----CeEEEEcC
Q 023106 175 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVI----VDGNYLFLDG-----------GVW-KDVSSMFD----EKWFIEVD 234 (287)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I----~~p~lLllDE-----------~~~-~~l~~~~~----~~i~vtHd 234 (287)
+........+|+||++++.| .+|.++|||| .+. ..+..+.+ .++++|||
T Consensus 727 -----------d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~ 795 (918)
T 3thx_B 727 -----------DNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHY 795 (918)
T ss_dssp ------------------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred -----------HHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 11123456789999999877 7899999999 222 33333322 25799999
Q ss_pred hHHHH
Q 023106 235 LDTAM 239 (287)
Q Consensus 235 ~~~~~ 239 (287)
++++.
T Consensus 796 ~el~~ 800 (918)
T 3thx_B 796 PPVCE 800 (918)
T ss_dssp GGGGG
T ss_pred HHHHH
Confidence 88764
No 98
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.30 E-value=2e-13 Score=134.56 Aligned_cols=144 Identities=11% Similarity=0.047 Sum_probs=73.2
Q ss_pred EEEecCchhhhhhhhhcccccccc----------ccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-Ccc-eeeCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSAL----------ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKA-SSFDS 144 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~v----------sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-~~G-i~~~g 144 (287)
+++++||++.|+..... +|+.+ +++++. +||+||||||||||+++|+|++. | ++| +.++|
T Consensus 10 ~i~~~~l~~~~~~~~r~--ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~---P~~sG~vt~~g 81 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRP--CIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL---PRGSGIVTRCP 81 (608)
T ss_dssp ----------CHHHHHH--HHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCSC
T ss_pred hhhhhhhhHHHHHHHHH--HHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC---CCCCCeEEEcC
Confidence 58899999999764311 33333 356654 99999999999999999999987 8 789 88888
Q ss_pred CCHHHH------hhhCCCCCCCChh---HHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE---ecCCEEe
Q 023106 145 QDPKEA------HARRGAPWTFNPL---LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI---VDGNYLF 212 (287)
Q Consensus 145 ~~~~~~------~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I---~~p~lLl 212 (287)
.++... ..+..+++.+|.. ...++.+++.......... . ..+|. +.-++.+ ..|+++|
T Consensus 82 ~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~-~--------~~~s~-~~i~l~i~~~~~p~LlL 151 (608)
T 3szr_A 82 LVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGE-G--------MGISH-ELITLEISSRDVPDLTL 151 (608)
T ss_dssp EEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCS-S--------SCCCS-CCEEEEEEESSSCCEEE
T ss_pred EEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCC-c--------cccch-HHHHHHhcCCCCCceeE
Confidence 764211 1112234444432 3378888886642221100 0 01111 1112222 6799999
Q ss_pred Eecc-----------------hHHHHHhccCC-----eEEEEcChHHH
Q 023106 213 LDGG-----------------VWKDVSSMFDE-----KWFIEVDLDTA 238 (287)
Q Consensus 213 lDE~-----------------~~~~l~~~~~~-----~i~vtHd~~~~ 238 (287)
+||+ +++.+.++... .++++||++.+
T Consensus 152 lDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 152 IDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp EECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred eeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 9994 34455554332 24889998855
No 99
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.29 E-value=3.9e-13 Score=123.48 Aligned_cols=67 Identities=24% Similarity=0.281 Sum_probs=60.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~ 148 (287)
|++|+++++++.|+... +|+++||++.+|++++|+|+||||||||+++|+|++. |++| +.+.|.++.
T Consensus 27 i~~ie~~~~~~~~~~~~----~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~---~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 27 ITLAESRRADHRAAVRD----LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT---AAGHKVAVLAVDPS 94 (337)
T ss_dssp HHHHTCSSHHHHHHHHH----HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEEEECGG
T ss_pred HHHHeeCCcccccChHH----HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh---hCCCEEEEEEEcCc
Confidence 45689999999998766 8999999999999999999999999999999999999 9888 878776653
No 100
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.28 E-value=7.7e-13 Score=112.33 Aligned_cols=165 Identities=16% Similarity=0.238 Sum_probs=78.6
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----HhhhCCCC-------CCCChhHHH-HHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----AHARRGAP-------WTFNPLLLL-NCL 169 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~~~~~~~~-------~~~~~~~~~-tv~ 169 (287)
...+|.+++|+|+||||||||+++|++++. +.+| +.+.+.+... .....+.. ..++...+. .++
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~ 94 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR---EQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLF 94 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh---hcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHH
Confidence 467899999999999999999999999998 7777 6555443211 11111111 111211111 112
Q ss_pred HHHhcCCceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecch--HHHHHhccCCeEEEEcChHHHHHHHHHHHh
Q 023106 170 KNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV--WKDVSSMFDEKWFIEVDLDTAMQRVLKRHI 247 (287)
Q Consensus 170 e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~--~~~l~~~~~~~i~vtHd~~~~~~rvigr~i 247 (287)
.++..+.....+.++..... ... ..+.+..+.++|+|=.. ...+.++++..|+|+.+.+....|++.|.
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~- 165 (201)
T 1rz3_A 95 RQLKASHQLTLPFYDHETDT-----HSK---RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV- 165 (201)
T ss_dssp GGTTTCSEEEEEEEETTTTE-----EEE---EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC-------------
T ss_pred HHHhcCCccccCceeccCCC-----CCC---ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC-
Confidence 22222222333333322100 000 11111233444444211 12244567778899999998888887765
Q ss_pred cCCCcHHHHHHHHHhcCccchh-hhccc--CCCCCEEEeCC
Q 023106 248 STGKPPDVAKWRIEYNDRPNAE-LIMKS--KKNADLVIKSI 285 (287)
Q Consensus 248 ~~G~~~~~~~~~~~~~~~~~~~-~i~~~--~~~ad~ii~~~ 285 (287)
+.+...+...+.|.++ |+.+. +..||+||+|.
T Consensus 166 ------~~~~~~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 166 ------KQNIQKFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred ------HHHHHHHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 2233444445567666 65454 68999999875
No 101
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.25 E-value=2.4e-12 Score=124.83 Aligned_cols=114 Identities=11% Similarity=0.066 Sum_probs=74.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eeeCCCCHHHHhh-h
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQDPKEAHA-R 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~~g~~~~~~~~-~ 153 (287)
.+++++++..|++... +| +..+.+|++++|+|+||||||||+++++|+.. +..+ +++.+++...... +
T Consensus 257 ~~~~~~l~~g~~~ld~---vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~~G~~vi~~~~ee~~~~l~~~ 327 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLDE---MC---GGGFFKDSIILATGATGTGKTLLVSRFVENAC---ANKERAILFAYEESRAQLLRN 327 (525)
T ss_dssp CCCCCEECCSCHHHHH---HT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH---TTTCCEEEEESSSCHHHHHHH
T ss_pred ccccceeecChHHHHH---Hh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---hCCCCEEEEEEeCCHHHHHHH
Confidence 4567778777754221 33 34899999999999999999999999999998 7643 4555554322111 0
Q ss_pred -CCCCCCCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec
Q 023106 154 -RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG 215 (287)
Q Consensus 154 -~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE 215 (287)
.... .+. .+....+ .+ ...+..+..||+||+||+++ .+|+++++|.
T Consensus 328 ~~~~g--~~~------~~~~~~g-~~-------~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp 379 (525)
T 1tf7_A 328 AYSWG--MDF------EEMERQN-LL-------KIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDS 379 (525)
T ss_dssp HHTTS--CCH------HHHHHTT-SE-------EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred HHHcC--CCH------HHHHhCC-CE-------EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence 0111 110 0111111 11 12345678899999999988 7899999997
No 102
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.24 E-value=3.9e-12 Score=114.04 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=40.8
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eeeC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFD 143 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~~ 143 (287)
+|+++++.+++|++++|+||||||||||++.|+|.+. +.+| +.+.
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~---~~~G~~v~~~ 70 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG---TAMGKKVGLA 70 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH---HTSCCCEEEE
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH---HHcCCeEEEE
Confidence 7899999999999999999999999999999999998 8766 5443
No 103
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.24 E-value=2.3e-12 Score=119.39 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=52.0
Q ss_pred EecCchhh---hhhhhhccccc---------cccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC
Q 023106 79 EARCMDEV---YDALAQRLLPT---------SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 79 ~~~~l~~~---y~~~~~~~~~l---------~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
+++++++. |+.... .+| +++||.+++|++++|+||||||||||+++|+|+++ |++| +.++|.
T Consensus 137 ~f~~v~f~~~~Y~~~~~--~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~---~~~g~I~ie~~ 211 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQ--ELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP---FDQRLITIEDV 211 (361)
T ss_dssp TTSCCCCSCSCCCHHHH--HHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC---TTSCEEEEESS
T ss_pred CcCccccccccccchhH--HHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC---CCceEEEECCc
Confidence 57788877 753211 144 99999999999999999999999999999999999 9999 778764
No 104
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.22 E-value=1.8e-13 Score=126.86 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=37.6
Q ss_pred cccccccccCC--CeEEEEECCCCCCHHHHHHHHHHHhcccCCCc
Q 023106 96 PTSALASNVNV--KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK 138 (287)
Q Consensus 96 ~l~~vsl~i~~--GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~ 138 (287)
+.+.|+++|.+ |++++|+||||||||||+++|+|+++ |++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~---~~~ 198 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN---TTS 198 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT---CEE
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC---CCc
Confidence 45679999999 99999999999999999999999999 888
No 105
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.22 E-value=1.2e-13 Score=116.79 Aligned_cols=117 Identities=17% Similarity=0.102 Sum_probs=65.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHh-hhCCCCCCCChhHHHHHHHHHhcCCceeeccCCc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDH 185 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~-~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 185 (287)
|++++|+||||||||||+++|+|+++ ++|+.++|....... ....+++.++...- ...++. ...+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~----~~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g--~~~~l~------~~~~~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK----SSGVPVDGFYTEEVRQGGRRIGFDVVTLSG--TRGPLS------RVGLEP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH----HTTCCCEEEECCEEETTSSEEEEEEEETTS--CEEEEE------ECCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc----cCCEEEcCEecchhHhhhceEEEEEEeccc--ceehhh------cccccC
Confidence 78999999999999999999999985 345666664431110 01112222222100 000110 001110
Q ss_pred c------CCCCCCCceeccccceE---------EEecCCEEeEec---------chHHHHHhccC---CeEE--EE--cC
Q 023106 186 G------VGDPVEDDILVGLQHKV---------VIVDGNYLFLDG---------GVWKDVSSMFD---EKWF--IE--VD 234 (287)
Q Consensus 186 ~------~~~~~~~~LSgGekqRv---------~I~~p~lLllDE---------~~~~~l~~~~~---~~i~--vt--Hd 234 (287)
. ...++...+|+||++++ ...+|+++|+|| ..++.|.++.+ ..|+ ++ ||
T Consensus 69 ~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~ 148 (189)
T 2i3b_A 69 PPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKG 148 (189)
T ss_dssp CSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCS
T ss_pred CccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCC
Confidence 0 12334556899888654 236899999999 34555665554 2343 34 88
Q ss_pred h
Q 023106 235 L 235 (287)
Q Consensus 235 ~ 235 (287)
.
T Consensus 149 ~ 149 (189)
T 2i3b_A 149 K 149 (189)
T ss_dssp S
T ss_pred C
Confidence 7
No 106
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.21 E-value=2.8e-12 Score=107.30 Aligned_cols=142 Identities=13% Similarity=0.003 Sum_probs=70.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC-CCCCCChhHHHHHHHHHhcCCcee-----
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG-APWTFNPLLLLNCLKNLRNQGSVY----- 179 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~-~~~~~~~~~~~tv~e~l~~~~~~~----- 179 (287)
|++++|+||||||||||+++|++ +..| +.++|.++.... ..+ ++.........++.+++.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~------~~~g~~~i~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA------QLDNSAYIEGDIINHMV-VGGYRPPWESDELLALTWKNITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH------HSSSEEEEEHHHHHTTC-CTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhc------ccCCeEEEcccchhhhh-ccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999987 4467 777775442211 111 111111122245556554321110
Q ss_pred ---eccCCccCCCCCCCce--eccccceEEE-----------ecCCEEeEec----ch---HHHHHhccCC---eEEEEc
Q 023106 180 ---APSFDHGVGDPVEDDI--LVGLQHKVVI-----------VDGNYLFLDG----GV---WKDVSSMFDE---KWFIEV 233 (287)
Q Consensus 180 ---~~~~~~~~~~~~~~~L--SgGekqRv~I-----------~~p~lLllDE----~~---~~~l~~~~~~---~i~vtH 233 (287)
...+......+....+ |+|+++++.+ ..+....+|+ .. ++.+..+... .|.+||
T Consensus 75 ~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~~~~~~~~~~~~~~ii~tsh 154 (189)
T 2bdt_A 75 DVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLELVEEFESKGIDERYFYNTSH 154 (189)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHHHHHHHHTTCCTTSEEECSS
T ss_pred cEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHHHHHHhhcCCCccEEEeCCC
Confidence 0000000000111234 8899988654 2333334443 11 4455544322 345678
Q ss_pred C-hHHHHH---HHH--HHHhcCCCcHHH
Q 023106 234 D-LDTAMQ---RVL--KRHISTGKPPDV 255 (287)
Q Consensus 234 d-~~~~~~---rvi--gr~i~~G~~~~~ 255 (287)
. ++.+.+ +++ |+++..|+++-+
T Consensus 155 ~~~~~~e~~~~~i~~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 155 LQPTNLNDIVKNLKTNPRFIFCMAGDPL 182 (189)
T ss_dssp SCGGGHHHHHHHHHHCGGGSCC------
T ss_pred CChhhHHHHHHHHhhCCcEEEeecCCch
Confidence 7 555544 666 788888877654
No 107
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.21 E-value=2.9e-12 Score=131.29 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=33.0
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+++|++|++.+|++++|+||||||||||+|+|++.
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 378999999999999999999999999999999543
No 108
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.20 E-value=1.3e-12 Score=132.22 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=34.5
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++|++|+ ++|++++|+||||||||||+|+|+|+..
T Consensus 596 ~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 596 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 389999999 9999999999999999999999999853
No 109
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.17 E-value=2.3e-11 Score=101.59 Aligned_cols=111 Identities=22% Similarity=0.143 Sum_probs=67.4
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh-CCCCCCCChhH-HHHHHHHHhcCC---
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR-RGAPWTFNPLL-LLNCLKNLRNQG--- 176 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~-~~~~~~~~~~~-~~tv~e~l~~~~--- 176 (287)
.+++|++++|+||||||||||+++|+|. ++.| +.++|.++...... ...++.++... ..++.+++....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-----~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-----PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-----SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-----cCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHH
Confidence 4678999999999999999999999996 4567 78888765432111 11344444322 256666654321
Q ss_pred -----ceeecc-C---Cc-c--CCCCCCCceeccccceEEE-----ecCCEEeEecchHH
Q 023106 177 -----SVYAPS-F---DH-G--VGDPVEDDILVGLQHKVVI-----VDGNYLFLDGGVWK 219 (287)
Q Consensus 177 -----~~~~~~-~---~~-~--~~~~~~~~LSgGekqRv~I-----~~p~lLllDE~~~~ 219 (287)
...... + .. . .....+..+|+|++|++++ .+|+++ +|....+
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l-ld~~~~~ 138 (191)
T 1zp6_A 80 AKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL-SDPLVVA 138 (191)
T ss_dssp HHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC-CCHHHHH
T ss_pred hccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc-CCHHHHH
Confidence 111110 0 00 0 0133456799999999887 566665 5764333
No 110
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.16 E-value=1.5e-11 Score=117.67 Aligned_cols=48 Identities=27% Similarity=0.293 Sum_probs=45.9
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
+|+++||+|++ +++||+||||||||||+++|+|+++ |++| +.++|.++
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~ 67 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI---PDLTLLNFRNTTE 67 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC---CCTTTCCCCCTTS
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEEc
Confidence 89999999999 9999999999999999999999999 9999 88999865
No 111
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.15 E-value=7.2e-12 Score=111.02 Aligned_cols=58 Identities=21% Similarity=0.193 Sum_probs=49.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-cc-eeeCCCCH
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KA-SSFDSQDP 147 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~-~G-i~~~g~~~ 147 (287)
++++++|++. . +|+++| +++|++++|+||||||||||+++|+|+++ |+ +| +.++|.++
T Consensus 5 ~~~l~~l~~~----~----vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 5 IPEFKKLGLP----D----KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPI 64 (261)
T ss_dssp -CCGGGSSCC----T----HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEESSC
T ss_pred CCChHHCCCH----H----HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCCcc
Confidence 4678888753 2 789998 89999999999999999999999999999 87 88 87877654
No 112
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.13 E-value=4.4e-11 Score=114.36 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=58.5
Q ss_pred ccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---------HhhhCCCCCCCChh---
Q 023106 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---------AHARRGAPWTFNPL--- 163 (287)
Q Consensus 97 l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---------~~~~~~~~~~~~~~--- 163 (287)
-+++||++.+|++++|+|+||||||||+++|+|++. +++| +.+.|.+... ...+.++++.++..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE---QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh---hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 468999999999999999999999999999999999 8888 8887655311 11244566666543
Q ss_pred HHHHHHHHHhcC
Q 023106 164 LLLNCLKNLRNQ 175 (287)
Q Consensus 164 ~~~tv~e~l~~~ 175 (287)
...++.+++.+.
T Consensus 360 p~~tV~e~l~~a 371 (503)
T 2yhs_A 360 SASVIFDAIQAA 371 (503)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 247888888764
No 113
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.12 E-value=1.9e-11 Score=108.74 Aligned_cols=124 Identities=17% Similarity=0.127 Sum_probs=68.6
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC----------cc-e-eeCCCCHHH-Hh-hhCCCCCCCChhHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ----------KA-S-SFDSQDPKE-AH-ARRGAPWTFNPLLLLNC 168 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~----------~G-i-~~~g~~~~~-~~-~~~~~~~~~~~~~~~tv 168 (287)
.+++|++++|+||||||||||++.|++.+. .. .+ + ++...+... .. +...+...++......+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~---~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~ 102 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA---GGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAV 102 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH---TCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh---cCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhc
Confidence 477999999999999999999999999776 31 22 2 333332211 10 00001111222211222
Q ss_pred HHHHhcCCceeeccCCccCCCCCCCceeccccceEEE--ecCCEEeEec----------------chHHHHHhccC---C
Q 023106 169 LKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI--VDGNYLFLDG----------------GVWKDVSSMFD---E 227 (287)
Q Consensus 169 ~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I--~~p~lLllDE----------------~~~~~l~~~~~---~ 227 (287)
.+++.+. ...++.+..||+|+.+++.- .+|+++++|| .++..|..+.+ .
T Consensus 103 ~~~l~l~----------~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~ 172 (279)
T 1nlf_A 103 ADGLLIQ----------PLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGC 172 (279)
T ss_dssp HHHEEEC----------CCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred cCceEEe----------ecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCC
Confidence 3333211 11234677899999887643 6899999999 12233333322 2
Q ss_pred -eEEEEcChHHHH
Q 023106 228 -KWFIEVDLDTAM 239 (287)
Q Consensus 228 -~i~vtHd~~~~~ 239 (287)
+|+++|+.....
T Consensus 173 tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 173 SIVFLHHASKGAA 185 (279)
T ss_dssp EEEEEEEC-----
T ss_pred EEEEEecCCCccc
Confidence 469999987663
No 114
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.12 E-value=1.3e-11 Score=112.78 Aligned_cols=129 Identities=11% Similarity=0.082 Sum_probs=79.1
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH---------HHhhhCCCCCCCChh---HHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK---------EAHARRGAPWTFNPL---LLLNCL 169 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~---------~~~~~~~~~~~~~~~---~~~tv~ 169 (287)
..++|++++|+||||||||||+++|+|++. |++| +.+.|.++. ....+.++++.++.. ...++.
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~ 201 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK---NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY 201 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHH
Confidence 447899999999999999999999999999 9999 888876641 112344554444432 337888
Q ss_pred HHHhcCCc----ee-eccCC-ccCCCCCCCceeccccceEEEecCCEEeEec----chHHHHHhcc---C-CeEEEEcCh
Q 023106 170 KNLRNQGS----VY-APSFD-HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMF---D-EKWFIEVDL 235 (287)
Q Consensus 170 e~l~~~~~----~~-~~~~~-~~~~~~~~~~LSgGekqRv~I~~p~lLllDE----~~~~~l~~~~---~-~~i~vtHd~ 235 (287)
+++.++.. .. ..... .......+.+||+ -.|+...++.+++||. ++++.++.+. . .++++||.-
T Consensus 202 e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~--i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 202 DAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKK--IARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHH--HHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHhccchhhHHhhccchhHHHHHHHHHHH--HHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 88865421 10 00000 0112234445553 2233346778999998 3344444332 2 357999954
Q ss_pred H
Q 023106 236 D 236 (287)
Q Consensus 236 ~ 236 (287)
.
T Consensus 280 ~ 280 (328)
T 3e70_C 280 A 280 (328)
T ss_dssp G
T ss_pred C
Confidence 3
No 115
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.10 E-value=1.2e-12 Score=123.38 Aligned_cols=46 Identities=17% Similarity=0.100 Sum_probs=38.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|+++||++.|++.. ++++++|+| +|+|+||||||||+++|+|...
T Consensus 11 ~l~~~~l~~~y~~~~----vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 11 YVGFANLPNQVYRKS----VKRGFEFTL------MVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp ----CCCCCCTTTTT----CC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred cEEEEecceeECCEE----EecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence 699999999998776 999999997 9999999999999999999876
No 116
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.09 E-value=1.7e-11 Score=113.34 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=31.2
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-cc
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KA 139 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~-~G 139 (287)
.+.+|++++|+||||||||||+++|+|+++ |+ +|
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~---~~~~~ 153 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN---NTKYH 153 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHH---HHCCC
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhccc---CCCCc
Confidence 678899999999999999999999999998 87 45
No 117
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.08 E-value=3.4e-11 Score=102.92 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=39.8
Q ss_pred ccccccc-ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC
Q 023106 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 96 ~l~~vsl-~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
.|+++.+ .+++|++++|+||||||||||++.|++.+. +.+| +.+.+.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~~v~~~~~ 59 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL---RDGDPCIYVTT 59 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH---HHTCCEEEEES
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCCeEEEEEc
Confidence 6788887 899999999999999999999999999887 6666 555443
No 118
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.01 E-value=3.4e-11 Score=101.64 Aligned_cols=49 Identities=18% Similarity=0.132 Sum_probs=35.8
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+|+++|+++.|+. . ++++ |.+.+|.+++|+|+||||||||++.|+|..
T Consensus 2 ~~l~~~~~~~~~~~-~----~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 2 TNLNYQQTHFVMSA-P----DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp ---------CEEEE-S----SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred cchhhhhhhheeec-C----CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999973 3 7777 899999999999999999999999999987
No 119
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.00 E-value=5.8e-11 Score=104.57 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=36.8
Q ss_pred cEEEecCc-hhhh-hhhhhccccccccccccCC---CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 76 PVVEARCM-DEVY-DALAQRLLPTSALASNVNV---KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 76 ~~i~~~~l-~~~y-~~~~~~~~~l~~vsl~i~~---GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++|+++|| ++.| ++.. +|+++||+|.+ |++++|+|++||||||++++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~~~----~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQ----ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------CH----HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCcch----hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 37999999 9999 5554 89999999999 99999999999999999999999776
No 120
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.98 E-value=1.4e-10 Score=109.36 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=53.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
.++++++++.|+... +|+++ +. .+|++++|+||||||||||+++|+|+++ |++| |.+.+.++
T Consensus 143 ~~~l~~Lg~~~~~~~----~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~I~~~ed~i 205 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHD----NFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELN---SSERNILTVEDPI 205 (418)
T ss_dssp CCCGGGSCCCHHHHH----HHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSCEEEEESSC
T ss_pred CCCHHHcCCCHHHHH----HHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEEecccc
Confidence 477889998888766 88888 54 8999999999999999999999999999 8888 77766543
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.97 E-value=9.2e-11 Score=109.03 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=38.5
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-cc-eeeCCCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KA-SSFDSQD 146 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~-~G-i~~~g~~ 146 (287)
+|++++ +.+|++++|+||||||||||+++|+|+++ |+ +| +.+.+.+
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~---~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDP 174 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH---HHSCCEEEEEESS
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC---cCCCcEEEEeccc
Confidence 456554 88999999999999999999999999998 87 78 6555543
No 122
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.94 E-value=8.3e-12 Score=114.19 Aligned_cols=67 Identities=24% Similarity=0.322 Sum_probs=52.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCC-------eEEEEECCCCCCHHHHHHHHHHHhccc-CCCcc-eeeCCCCH
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVK-------HIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKA-SSFDSQDP 147 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~G-------eivgIiGpNGsGKSTLlk~L~Gll~~~-~p~~G-i~~~g~~~ 147 (287)
+++.+++++.|++.. +++++++.+..| +.++|+||||+|||||+++|+|.+... .+.+| +...+.++
T Consensus 18 ~lr~~~l~~~~g~~~----~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l 93 (334)
T 1in4_A 18 FLRPKSLDEFIGQEN----VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDM 93 (334)
T ss_dssp TTSCSSGGGCCSCHH----HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHH
T ss_pred HcCCccHHHccCcHH----HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHH
Confidence 367788999998766 889999999876 899999999999999999999998311 05666 55444443
No 123
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.93 E-value=8.4e-09 Score=90.25 Aligned_cols=172 Identities=26% Similarity=0.421 Sum_probs=98.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccC----------CCcceeeCCCCHHH-HhhhCC-----CCCCCChhHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIW----------PQKASSFDSQDPKE-AHARRG-----APWTFNPLLLLNCL 169 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~----------p~~Gi~~~g~~~~~-~~~~~~-----~~~~~~~~~~~tv~ 169 (287)
+..+|||.|+.||||||+.+.|+..+...+ .+.+-++....... .+...+ .+..++...+...+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~~L 100 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTL 100 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHHHH
Confidence 456899999999999999999988664110 01111111111111 111122 12334444446677
Q ss_pred HHHhcCCceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHh-c
Q 023106 170 KNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHI-S 248 (287)
Q Consensus 170 e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i-~ 248 (287)
+.+..+.....+.|+.....+....+.- ....+.|.++.+++.+ ..+.+.++.+|+++.+.+....|+..|.. .
T Consensus 101 ~~l~~~~~v~~~~~d~~~~~~~~~~~~~-~~~~~vIveG~~~~~~----~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~ 175 (252)
T 1uj2_A 101 KEITEGKTVQIPVYDFVSHSRKEETVTV-YPADVVLFEGILAFYS----QEVRDLFQMKLFVDTDADTRLSRRVLRDISE 175 (252)
T ss_dssp HHHHTTCCEEEEEEETTTTEEEEEEEEE-CCCSEEEEECTTTTSS----HHHHHHCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCeeecCccccccccCCCceeee-CCCcEEEEeeeccccC----HHHHHhcCeeEEEeCCHHHHHHHHHHHHHhh
Confidence 7776655555555543322111100100 0123444444433322 34556677789999999999988887643 4
Q ss_pred CCCcHHHHHHHHHhcCccchh-hhcccCCCCCEEE
Q 023106 249 TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVI 282 (287)
Q Consensus 249 ~G~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii 282 (287)
.|...+.+...+...+.+.+. ++.+.+..||++|
T Consensus 176 rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI 210 (252)
T 1uj2_A 176 RGRDLEQILSQYITFVKPAFEEFCLPTKKYADVII 210 (252)
T ss_dssp SCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEE
T ss_pred hCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEE
Confidence 576666666666666655555 7788888999999
No 124
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.92 E-value=2.9e-10 Score=98.20 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=22.9
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHH-HHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~-Gll~ 132 (287)
..+++||++++|+++||+||||||||||+++|+ |+++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 568999999999999999999999999999999 9985
No 125
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.91 E-value=3.4e-10 Score=103.76 Aligned_cols=49 Identities=10% Similarity=0.046 Sum_probs=36.5
Q ss_pred CCCCCceeccccceEE------E-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHH
Q 023106 189 DPVEDDILVGLQHKVV------I-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDT 237 (287)
Q Consensus 189 ~~~~~~LSgGekqRv~------I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~ 237 (287)
++.+..|||||||||. + .+|++||||| .+++.|.++.. .++++|||.+.
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~ 316 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 316 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH
Confidence 4678899999999653 3 5899999999 34556655543 25799999764
No 126
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.90 E-value=3.5e-11 Score=110.90 Aligned_cols=106 Identities=15% Similarity=0.215 Sum_probs=63.7
Q ss_pred ccccc-ccccCCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCc----c--eeeCCCCH---HH-HhhhCCCCCCCCh
Q 023106 96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQK----A--SSFDSQDP---KE-AHARRGAPWTFNP 162 (287)
Q Consensus 96 ~l~~v-sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll--~~~~p~~----G--i~~~g~~~---~~-~~~~~~~~~~~~~ 162 (287)
.|+.+ ++.|++|++++|+||||||||||++.|++.. + |+. | +++++.+. .. ....+... ++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~---~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~--~~~ 193 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTENTFRPERIREIAQNRG--LDP 193 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTSCSCEEEEEESSSCCCHHHHHHHHHTTT--CCH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc---hhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcC--CCH
Confidence 35554 6899999999999999999999999999998 4 554 4 67787653 11 11111111 111
Q ss_pred hHHHHHHHHHhcCCceeeccCC--ccCCCCCCCceeccccceEEEecCCEEeEec
Q 023106 163 LLLLNCLKNLRNQGSVYAPSFD--HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (287)
Q Consensus 163 ~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~~~~LSgGekqRv~I~~p~lLllDE 215 (287)
.++++|+.+.......... -......+.++|+|| .+|+++++||
T Consensus 194 ---~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~------~~~~llIlDs 239 (349)
T 1pzn_A 194 ---DEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTD------RPVKLLIVDS 239 (349)
T ss_dssp ---HHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSS------SCEEEEEEET
T ss_pred ---HHHhhCEEEEecCChHHHHHHHHHHHHHHHHhcccc------CCCCEEEEeC
Confidence 2556665543211000000 001122455678887 5789999999
No 127
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.89 E-value=9.4e-10 Score=98.80 Aligned_cols=179 Identities=12% Similarity=0.071 Sum_probs=92.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC---CHHHHh-------h----hCCC--CCCCChhHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ---DPKEAH-------A----RRGA--PWTFNPLLLLNC 168 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~---~~~~~~-------~----~~~~--~~~~~~~~~~tv 168 (287)
++-+|||.|++||||||+.+.|+..+.......- +..|+. +..... . .... +..++...+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~ 83 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERV 83 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHH
Confidence 4568999999999999999999886541000000 111211 121110 0 1111 233443333444
Q ss_pred HHHHhcCCceeeccCCcc-----CCCCCCCce----eccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHH
Q 023106 169 LKNLRNQGSVYAPSFDHG-----VGDPVEDDI----LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAM 239 (287)
Q Consensus 169 ~e~l~~~~~~~~~~~~~~-----~~~~~~~~L----SgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~ 239 (287)
+..+..+.....+.|... ........+ ...+...+.|.++.++++.. ....+...++..|+|+.+.+...
T Consensus 84 l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~-~~~~v~~~~D~~IfV~a~~~~rl 162 (290)
T 1a7j_A 84 FREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVN-SEVNIAGLADLKIGVVPVINLEW 162 (290)
T ss_dssp HHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBC-SSCBCGGGCSEEEEEEECHHHHH
T ss_pred HHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEeccccccc-chHhHHHhCCEEEEEECCHHHHH
Confidence 455554444444444221 111111111 01111234444444433110 01234566777899999999999
Q ss_pred HHHHHHHhc-CCCcHHHHHHHHHhcCccchh-hhcccCCCCCE------EEeCCC
Q 023106 240 QRVLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADL------VIKSID 286 (287)
Q Consensus 240 ~rvigr~i~-~G~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad~------ii~~~~ 286 (287)
.|++.|.+. +|...+.+...+... .+.+. |+.|.+..||+ +|++++
T Consensus 163 ~Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~~~~~~~vIDns~ 216 (290)
T 1a7j_A 163 IQKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDINFQRVPVVDTSN 216 (290)
T ss_dssp HHHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEEEEEEESSCCSC
T ss_pred HHHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCEeeccCceecCCC
Confidence 888877654 676555444555555 66665 99999999999 777654
No 128
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.88 E-value=2.6e-10 Score=107.38 Aligned_cols=49 Identities=24% Similarity=0.308 Sum_probs=40.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeE--EEEECCCCCCHHHHHHHHHHHh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~Gei--vgIiGpNGsGKSTLlk~L~Gll 131 (287)
.|++++ ++.|++. .|+++||++++|++ +||+||||||||||+++|+|+.
T Consensus 16 ~l~~~~-~~~y~~~-----~L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 16 TVPLAG-HVGFDSL-----PDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CCCCC-CC-CC-------CHHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEee-EEEECCe-----ecCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 477888 8999763 28999999999999 9999999999999999999974
No 129
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.88 E-value=8.1e-10 Score=94.36 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=38.0
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++++.++..|..... +|.+ -|++|++++|+||||||||||+++|+|++.
T Consensus 2 ~~~~~i~tG~~~LD~---~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 2 ATIGRISTGSKSLDK---LLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp CCCCEECCSCHHHHH---HTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcCCccCCCChhHHh---HhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456667766654321 3432 688999999999999999999999999765
No 130
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=2.6e-09 Score=90.14 Aligned_cols=38 Identities=37% Similarity=0.407 Sum_probs=25.9
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++|+||++.+|.+++|+|++||||||+.+.|++.+.
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 37899999999999999999999999999999999875
No 131
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.86 E-value=6.9e-10 Score=92.14 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=29.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCC---cc-eeeCCCC
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KA-SSFDSQD 146 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~~~~p~---~G-i~~~g~~ 146 (287)
++++|+|+||||||||+++|+|++. |+ .| +.++|.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~---~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR---ERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH---HTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh---hcCCceEEEEEcCcc
Confidence 5899999999999999999999999 87 78 7888876
No 132
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.85 E-value=1.3e-09 Score=91.75 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=26.6
Q ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 101 sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|+++.+|+++||+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 56788999999999999999999999999863
No 133
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.84 E-value=1.6e-09 Score=95.13 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=34.1
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcC--CCcHHHHHHHHHhcCccchh-hhcccCCCCC-EEEeCCC
Q 023106 226 DEKWFIEVDLDTAMQRVLKRHIST--GKPPDVAKWRIEYNDRPNAE-LIMKSKKNAD-LVIKSID 286 (287)
Q Consensus 226 ~~~i~vtHd~~~~~~rvigr~i~~--G~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad-~ii~~~~ 286 (287)
+..||++.+.+...+|+..+.... +...+.+...+...+..... .+.|.+..+| ++|++++
T Consensus 164 ~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~ 228 (252)
T 4e22_A 164 PVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTS 228 (252)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSS
T ss_pred CEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcC
Confidence 446899999999988877544433 33444444444444444443 6778888888 8888763
No 134
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.84 E-value=1.1e-10 Score=101.25 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=41.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
.|+++|++..|+. ++++.+ ++++|+||||||||||+++|+|++. |++| +.++|.++
T Consensus 9 ~l~l~~~~~~~~~-----------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~---~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFAR-----------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI---PDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEEE-----------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS---CCTTTC-------
T ss_pred EEEEEeeecccCC-----------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc---cCCCeEEECCEEc
Confidence 5889998776532 344445 8999999999999999999999999 9999 88888765
No 135
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.74 E-value=5.9e-09 Score=84.37 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=29.1
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|+++ +|+.++|+||||+|||||+++|++.+.
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 55655 899999999999999999999999997
No 136
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.72 E-value=2.2e-09 Score=90.62 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=42.6
Q ss_pred cCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-e--eeCCCCH
Q 023106 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S--SFDSQDP 147 (287)
Q Consensus 81 ~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i--~~~g~~~ 147 (287)
+|++..++... +.+..++..++|++++|+||||||||||+++|++.+. ..| + +++|.++
T Consensus 3 ~~~~~~~~~~~----~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~----~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 3 TNIKWHECSVE----KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY----QKGKLCYILDGDNV 64 (200)
T ss_dssp -------CCCC----HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH----HTTCCEEEEEHHHH
T ss_pred CCCcccccccC----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH----hcCceEEEecCchh
Confidence 45666665544 6678888899999999999999999999999999985 345 4 6776543
No 137
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.71 E-value=2e-09 Score=103.95 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=43.5
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
+++++++.+++|++++|+||||||||||+++|+|+++ |+.| +.+.|.
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~giitied~ 296 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP---PDAKVVSIEDT 296 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCEEEEESS
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCEEEEcCc
Confidence 6789999999999999999999999999999999999 9999 677664
No 138
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.70 E-value=1.3e-08 Score=84.21 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=34.3
Q ss_pred cccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 98 ~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
+++++++.+| +.+|+||||||||||+++|.+++. +..|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~---~~~~ 55 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG---GLSA 55 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT---CCCT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc---CCcc
Confidence 5778889899 999999999999999999999998 7655
No 139
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.69 E-value=9.1e-09 Score=93.08 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=38.3
Q ss_pred ccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 99 ~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.+++...+|++++|+|+|||||||++..|++.+. +.+| +.+.+.+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~kV~lv~~D 141 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGKSVVLAAAD 141 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEEC
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH---hcCCEEEEEccc
Confidence 4567778999999999999999999999999998 7777 6665544
No 140
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.62 E-value=3.6e-09 Score=97.62 Aligned_cols=47 Identities=23% Similarity=0.214 Sum_probs=32.2
Q ss_pred ccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeC-CCC
Q 023106 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFD-SQD 146 (287)
Q Consensus 97 l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~-g~~ 146 (287)
++++++.+ +|++++|+||||||||||+++|+|++.. +..| +.+. |..
T Consensus 206 l~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~~G~I~~~~G~g 254 (358)
T 2rcn_A 206 LKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNE--ILTNDVSNVSGLG 254 (358)
T ss_dssp HHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSC--CCCC---------
T ss_pred HHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccc--cccCCccccCCCC
Confidence 45566544 7999999999999999999999998631 4567 6654 543
No 141
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.61 E-value=1.8e-08 Score=84.59 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=29.5
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
+++.+|++++|+||||||||||+++|++++. |+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~---~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS---TSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT---CCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC---CCeE
Confidence 4678999999999999999999999999986 6555
No 142
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.60 E-value=1.5e-08 Score=84.58 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=27.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
|++++|+||||||||||+++|+|+++ +..|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~---~~~~ 30 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP---DSFG 30 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG---GGEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC---ccce
Confidence 57899999999999999999999987 6655
No 143
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.59 E-value=2.4e-08 Score=88.79 Aligned_cols=45 Identities=33% Similarity=0.375 Sum_probs=39.9
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
+++++++.+++| ++|+||||||||||+++|+|.+. + + +.++|.++
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~---~--~~i~i~g~~l 80 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG---L--NFISVKGPEL 80 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT---C--EEEEEETTTT
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC---C--CEEEEEcHHH
Confidence 789999999999 99999999999999999999987 5 5 67777654
No 144
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.58 E-value=9.6e-09 Score=92.55 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=31.2
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eee---CCCCH
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSF---DSQDP 147 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~---~g~~~ 147 (287)
|++..|++++|+||||||||||+++|+|++. |+.| +.+ +|.++
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~---~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSEVSEKLQRGRHT 210 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC---CC-------------C
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc---ccccceecccCCCCCc
Confidence 4566899999999999999999999999999 9999 777 67654
No 145
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.57 E-value=2.2e-08 Score=84.51 Aligned_cols=28 Identities=39% Similarity=0.515 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++|.+++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4789999999999999999999999875
No 146
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.55 E-value=1.9e-08 Score=87.67 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=47.9
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.+++++.+.|+... +++++++++++| ++|+||||+|||||+++|++.+. .| +.+++.+
T Consensus 26 ~~l~~l~~~~~~~~----~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~ 84 (254)
T 1ixz_A 26 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSD 84 (254)
T ss_dssp HHHHHHHHHHHCHH----HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHH
T ss_pred HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHH
Confidence 45778888887655 899999999999 89999999999999999999874 45 5565543
No 147
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.54 E-value=1.6e-08 Score=92.70 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=51.3
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
+.+++.+++.+.|+... +++++++.+.+|.+++|+|+||+|||||++.|++.+. +..+
T Consensus 28 i~~ie~~~~~~~~~~~~----~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~---~~~~ 85 (341)
T 2p67_A 28 MTLVESRHPRHQALSTQ----LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI---REGL 85 (341)
T ss_dssp HHHHHCCCHHHHHHHHH----HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH---HTTC
T ss_pred hhHhhcCCchhhhHHHH----HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH---hcCC
Confidence 34688889999998776 8899999999999999999999999999999999987 5555
No 148
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.53 E-value=1.4e-09 Score=92.96 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=27.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
+.+++|+||+||||||++++|++.+...+++.|
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g 37 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSG 37 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCc
Confidence 568999999999999999999998732226666
No 149
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.53 E-value=2.3e-08 Score=88.54 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=48.1
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.+++++.+.|+... +++++++.+++| ++|+||||+|||||+++|++.+. .| +.+++.+
T Consensus 50 ~~l~~l~~~~~~~~----~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~ 108 (278)
T 1iy2_A 50 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSD 108 (278)
T ss_dssp HHHHHHHHHHHCHH----HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHH
T ss_pred HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHH
Confidence 44678888887665 899999999999 89999999999999999999874 45 5666543
No 150
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.52 E-value=1.5e-08 Score=99.70 Aligned_cols=61 Identities=23% Similarity=0.305 Sum_probs=50.7
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc-c-eeeCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-A-SSFDSQ 145 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~-G-i~~~g~ 145 (287)
+.-++++..||... +++++++.+..|+.++|+||||+|||||+++|+++++ +.. | +.+.+.
T Consensus 35 ~rp~~l~~i~G~~~----~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~~~~~~~~ 97 (604)
T 3k1j_A 35 VPEKLIDQVIGQEH----AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP---TETLEDILVFPN 97 (604)
T ss_dssp CCSSHHHHCCSCHH----HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC---CSSCEEEEEECC
T ss_pred ccccccceEECchh----hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC---cccCCeEEEeCC
Confidence 33456677787766 8899999999999999999999999999999999998 776 4 555544
No 151
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.48 E-value=1.4e-08 Score=91.90 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=27.1
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eee---CCCC
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSF---DSQD 146 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~---~g~~ 146 (287)
+++.+|++++|+||||+|||||+++|+|++. +..| +.+ .|..
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~---~~~G~I~~~~~~G~~ 213 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG---LRTNEISEHLGRGKH 213 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc---ccccceeeecCCCcc
Confidence 7888999999999999999999999999998 8888 766 5554
No 152
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.47 E-value=4.7e-08 Score=80.72 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=32.2
Q ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 101 sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
+|.+.+|+.++|+||||+|||||+++|++.+. +..|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~---~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY---EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH---HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH---HHcC
Confidence 46677899999999999999999999999997 6666
No 153
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.47 E-value=4.8e-08 Score=88.08 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=32.3
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eee---CCCCH
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSF---DSQDP 147 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~---~g~~~ 147 (287)
+++..|++++|+||||||||||+++|+ ++. |+.| +.+ +|.++
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~---~~~G~i~~~~~~G~~~ 205 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE---LRTQEVSEKTERGRHT 205 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC---CCCSCC---------C
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh---CcccccccccCCCCCc
Confidence 355679999999999999999999999 988 9999 877 77654
No 154
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.46 E-value=2.3e-07 Score=84.46 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=25.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH-HhcccCCCcc-eeeCCCCH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR-RINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G-ll~~~~p~~G-i~~~g~~~ 147 (287)
.+.|.||||+|||||+++|++ ++. |+.| +.++|.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~---~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG---PGVYRLKIDVRQF 75 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC---TTCCC--------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC---CCCCeEEecceee
Confidence 389999999999999999999 667 7778 77776543
No 155
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.43 E-value=1.1e-07 Score=78.79 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=25.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|++++|+||||||||||+++|++.++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999999875
No 156
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.41 E-value=1.1e-07 Score=85.40 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=48.4
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
+.++++++.|+.. .++++|+ +|++++|+|+||+||||++..|++++. +..| +.+.+.++
T Consensus 77 ~~~~~l~~~~~~~------~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 77 TVYEALKEALGGE------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAADT 136 (295)
T ss_dssp HHHHHHHHHTTSS------CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEEEEECCS
T ss_pred HHHHHHHHHHCCC------CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEecCCc
Confidence 4567788888642 1678888 999999999999999999999999998 7777 77766554
No 157
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.40 E-value=1.5e-07 Score=79.21 Aligned_cols=148 Identities=13% Similarity=0.049 Sum_probs=74.6
Q ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHH--hhhCCCCCCCChhHH---HHHHHHHhcC
Q 023106 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEA--HARRGAPWTFNPLLL---LNCLKNLRNQ 175 (287)
Q Consensus 101 sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~--~~~~~~~~~~~~~~~---~tv~e~l~~~ 175 (287)
.+...+|++++|+||||||||||+++|++.+. -+.+++.++... ......+..++.... +++++++...
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g------~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 96 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADETG------LEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDA 96 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHHC------CEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhhC------CeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHH
Confidence 35667899999999999999999999999862 155666543211 111113445555432 4555554321
Q ss_pred CceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCC--eEEEEcChHHHHHHHHHHHhcCCCcH
Q 023106 176 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--KWFIEVDLDTAMQRVLKRHISTGKPP 253 (287)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~--~i~vtHd~~~~~~rvigr~i~~G~~~ 253 (287)
. +..| ..+.+..+ ++.+...+.+.++... .|+++.+.+.+.+|+..|.-. ..+.
T Consensus 97 ~------------------~~~g--~~viid~~---~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~-~~~~ 152 (200)
T 4eun_A 97 R------------------ADAG--VSTIITCS---ALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGH-FMPA 152 (200)
T ss_dssp H------------------HHTT--CCEEEEEC---CCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCC-SSCG
T ss_pred H------------------HhcC--CCEEEEch---hhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccC-CCCH
Confidence 0 0001 11222111 1223333444443322 468899998888777543211 1123
Q ss_pred HHHHHHHHhcCccchhhhcccCCCCCEEEeCC
Q 023106 254 DVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 285 (287)
Q Consensus 254 ~~~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~ 285 (287)
+.+...+.... ..+...+|++|++.
T Consensus 153 ~~l~~~~~~~~-------~~~~~~~~~~Id~~ 177 (200)
T 4eun_A 153 SLLQSQLATLE-------ALEPDESGIVLDLR 177 (200)
T ss_dssp GGHHHHHHHCC-------CCCTTSCEEEEETT
T ss_pred HHHHHHHHHhC-------CCCCCCCeEEEECC
Confidence 34444333221 22234478888763
No 158
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.40 E-value=1.8e-07 Score=85.02 Aligned_cols=47 Identities=21% Similarity=0.172 Sum_probs=41.3
Q ss_pred cccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 98 ~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
.+++|++.+|++++|+|+||+||||++..|++.+. +.+| +.+.+.++
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~---~~g~kVllid~D~ 143 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA---ELGYKVLIAAADT 143 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH---HTTCCEEEEECCC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCC
Confidence 68999999999999999999999999999999998 7777 66655543
No 159
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.39 E-value=9.6e-08 Score=88.17 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=32.3
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+++++|++.+| +++|+||||||||||+++|.++.
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence 678999999999 99999999999999999999843
No 160
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.39 E-value=3.5e-08 Score=85.87 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=31.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHH---HHhcccCCCcc-eeeCC
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKA-SSFDS 144 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~---Gll~~~~p~~G-i~~~g 144 (287)
++++++|+||||||||||+++|+ |+.. ++.| +.++|
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~---~~~G~i~~~~ 65 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH---LSSGHFLREN 65 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC---EEHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE---ecHHHHHHHH
Confidence 47899999999999999999999 8777 8888 65554
No 161
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.35 E-value=1.5e-07 Score=87.36 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=34.9
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++++++.+++|++++|+||||||||||+++|+|.+.
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 7899999999999999999999999999999999653
No 162
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.32 E-value=2.7e-07 Score=86.93 Aligned_cols=46 Identities=17% Similarity=0.355 Sum_probs=38.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-|+++|+ +.|++.. . +++.+|++++|+||||||||||+++|.+++.
T Consensus 6 ~l~~~~~-~~~~~~~-------~--~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 6 GLELSNF-KSYRGVT-------K--VGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EEEEESC-SSCCSEE-------E--EECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEeCE-EEECCce-------e--EEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3788999 7886421 2 4467899999999999999999999999886
No 163
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.30 E-value=3.5e-07 Score=78.46 Aligned_cols=41 Identities=12% Similarity=0.224 Sum_probs=33.8
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH--hcccCC-----Ccc-eeeCCCC
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWP-----QKA-SSFDSQD 146 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gl--l~~~~p-----~~G-i~~~g~~ 146 (287)
-+++|++++|+||||||||||++.|++. ++ + ..| +++++..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLP---IDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSC---GGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCc---hhcCCCCCeEEEEECCC
Confidence 4779999999999999999999999994 44 4 455 6777765
No 164
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.30 E-value=3.3e-07 Score=77.74 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=26.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++|++++|+||||||||||+++|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999986
No 165
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.27 E-value=7.4e-06 Score=68.58 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..+++|+|++|||||||++.|++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 166
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.26 E-value=3.9e-07 Score=88.62 Aligned_cols=43 Identities=28% Similarity=0.314 Sum_probs=37.7
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--ee-eCCCCHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SS-FDSQDPK 148 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~-~~g~~~~ 148 (287)
.+.+|++++|+|+||||||||+++|++.+. |++| +. ++|.++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~---~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM---EMGGRCVTLLDGDIVR 410 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH---TTCSSCEEEESSHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc---ccCCceEEEECCcHHH
Confidence 678999999999999999999999999999 8886 64 7776553
No 167
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.24 E-value=3.6e-07 Score=88.81 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=50.4
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS 144 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g 144 (287)
+-++++.+.|+... ++.++++++ +|.+++|+||||+|||||+++|++.+. +..| +.+.|
T Consensus 84 ~G~~~vk~~i~~~~----~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~i~~~~ 143 (543)
T 3m6a_A 84 HGLEKVKERILEYL----AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG---RKFVRISLGG 143 (543)
T ss_dssp SSCHHHHHHHHHHH----HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT---CEEEEECCCC
T ss_pred ccHHHHHHHHHHHH----HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC---CCeEEEEecc
Confidence 44678888887766 788999999 899999999999999999999999998 7766 55555
No 168
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.24 E-value=3.2e-07 Score=83.14 Aligned_cols=39 Identities=31% Similarity=0.302 Sum_probs=31.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc-----cCCCcc-eeeCCCC
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRINK-----IWPQKA-SSFDSQD 146 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~~-----~~p~~G-i~~~g~~ 146 (287)
++++|+|+||||||||++.|+|+... ..|+.| +.++|..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~ 49 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQL 49 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHH
Confidence 58999999999999999999998610 017888 7777753
No 169
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.23 E-value=3.5e-07 Score=78.79 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=33.9
Q ss_pred cccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 100 vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
-+...++|++++|.|+||||||||+++|+|+ .| +.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 4456789999999999999999999999885 35 77777664
No 170
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.23 E-value=7.3e-07 Score=72.96 Aligned_cols=27 Identities=41% Similarity=0.625 Sum_probs=25.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+|++++|+|+||||||||+++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 479999999999999999999999975
No 171
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.18 E-value=7.2e-07 Score=72.68 Aligned_cols=27 Identities=41% Similarity=0.646 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.|.+++|+|+||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999876
No 172
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.17 E-value=7.6e-07 Score=75.19 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=35.7
Q ss_pred ccccccc-ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC
Q 023106 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 96 ~l~~vsl-~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
.|+.+.. .+++|++++|+||||||||||++.|++ . +..+ ++++..
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~ 54 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTE 54 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESS
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECC
Confidence 4566654 689999999999999999999999999 4 4445 555544
No 173
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.15 E-value=3.1e-07 Score=86.38 Aligned_cols=34 Identities=38% Similarity=0.455 Sum_probs=32.3
Q ss_pred cccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 98 ~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
++++|+++.|++++|+|+||||||||+++|+|..
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 5899999999999999999999999999999983
No 174
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.15 E-value=1.2e-06 Score=74.09 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=26.6
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+...+|.+++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4455899999999999999999999999865
No 175
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.14 E-value=1.2e-06 Score=81.62 Aligned_cols=40 Identities=25% Similarity=0.462 Sum_probs=33.6
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHH------------HhcccCCCcc-eeeCCC
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVR------------RINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~G------------ll~~~~p~~G-i~~~g~ 145 (287)
.+.+|.++||+|+||||||||+++|+| ... |+.| +.+.|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~---p~~G~v~v~~~ 68 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID---PEEAKVAVPDE 68 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC---TTEEEEEECCH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeec---ceeeeeeeCCc
Confidence 567899999999999999999999999 333 7788 667664
No 176
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.10 E-value=2.9e-06 Score=68.34 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=24.9
Q ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 101 sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++++.+| +.+|+|||||||||++.+|.-.+.
T Consensus 18 ~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 18 VVEFKEG-INLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEcCCC-eEEEECCCCCCHHHHHHHHHHHHc
Confidence 3445444 889999999999999999986653
No 177
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.10 E-value=9.7e-07 Score=81.87 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=46.9
Q ss_pred EEEecCchhhhhhhhhcccccc--------------ccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 77 VVEARCMDEVYDALAQRLLPTS--------------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~--------------~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+.++||+..|.... ..|+ |+.+.+.+|+.++|+||+|+|||||++.|+..+.
T Consensus 133 ri~Fe~ltp~yP~er---~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 133 KILFENLTPLHANSR---LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCTTTSCEESCCSB---CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CceeccccccCCCCc---cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 378999999997532 2677 8999999999999999999999999999999875
No 178
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.07 E-value=1.6e-06 Score=73.04 Aligned_cols=32 Identities=28% Similarity=0.540 Sum_probs=28.4
Q ss_pred cccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 100 vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+--++.+|.+++|+|++|||||||+++|++.+
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 33467789999999999999999999999976
No 179
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.06 E-value=2e-07 Score=95.34 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=53.7
Q ss_pred CCCCCCceeccccceEEE-----ecCC--EEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH--HHH-
Q 023106 188 GDPVEDDILVGLQHKVVI-----VDGN--YLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL- 243 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I-----~~p~--lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~--rvi- 243 (287)
.++.+.+|||||+|||.| .+|+ +||||| .+++.|+++.+. +|+||||++++.. |++
T Consensus 458 l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~ 537 (916)
T 3pih_A 458 LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIID 537 (916)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEE
Confidence 467899999999999999 4454 999999 456666666553 5799999998765 433
Q ss_pred ---------HHHhcCCCcHHHHH
Q 023106 244 ---------KRHISTGKPPDVAK 257 (287)
Q Consensus 244 ---------gr~i~~G~~~~~~~ 257 (287)
|++++.|+++++..
T Consensus 538 lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 538 IGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp EESSSGGGCSEEEEEECHHHHHH
T ss_pred EcCCcccCCCEEEEeechhhhhc
Confidence 46778899888753
No 180
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.03 E-value=2.3e-06 Score=76.88 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=32.6
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eeeCCCC
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQD 146 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~~g~~ 146 (287)
.+|++++|+|+||+||||++..|++.+. ++.| +.+.+.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~---~~~G~~V~lv~~D 143 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM---LEKHKKIAFITTD 143 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcCCEEEEEecC
Confidence 4799999999999999999999999998 7677 4444433
No 181
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.03 E-value=2.1e-06 Score=77.16 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=44.8
Q ss_pred ecCchhhhhhhhhccccccc-cccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 80 ARCMDEVYDALAQRLLPTSA-LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 80 ~~~l~~~y~~~~~~~~~l~~-vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.+++.+.|++.. .+ ++++.+ |.+++++|+||+||||++..|++.+. +..+ +.+.+.+
T Consensus 77 ~~~l~~~~~~~~------~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~v~l~~~D 135 (297)
T 1j8m_F 77 YDELSNLFGGDK------EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFKVGLVGAD 135 (297)
T ss_dssp HHHHHHHTTCSC------CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH---HTTCCEEEEECC
T ss_pred HHHHHHHhcccc------ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEecC
Confidence 456777776532 46 888876 99999999999999999999999998 7666 6554444
No 182
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.03 E-value=4.3e-06 Score=72.13 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=27.7
Q ss_pred ccccccccC---CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 97 TSALASNVN---VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 97 l~~vsl~i~---~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|.++|+.+. +|.+++|.|++||||||+++.|+..+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 566666665 999999999999999999999999998
No 183
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.02 E-value=2.4e-06 Score=70.97 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=23.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-.++|+|+||||||||++.++|...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999999865
No 184
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.02 E-value=1.9e-06 Score=82.75 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=46.3
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.+++++.+.|.+.. +++++++.+++| +.|+||||+|||||+++|++... .+ +.+++.+
T Consensus 41 ~~l~~lv~~l~~~~----~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~ 99 (499)
T 2dhr_A 41 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSD 99 (499)
T ss_dssp HHHHHHHHHHHCGG----GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGG
T ss_pred HHHHHHHHHhhchh----hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhH
Confidence 45666777776554 789999999999 89999999999999999999864 44 5566543
No 185
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.00 E-value=3.7e-06 Score=79.18 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=44.7
Q ss_pred ecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 80 ~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.++|++.|+... .+++|+ +|.+++|+|+|||||||++..|++.+. +..+ +.+.+.+
T Consensus 79 ~~~L~~~~~~~~------~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~---~~g~~Vllvd~D 135 (425)
T 2ffh_A 79 YEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAAD 135 (425)
T ss_dssp HHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEEECC
T ss_pred HHHHHHHhCCCc------ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEeecc
Confidence 456777776531 577887 899999999999999999999999998 7766 6655544
No 186
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.99 E-value=6.5e-07 Score=72.31 Aligned_cols=48 Identities=10% Similarity=0.058 Sum_probs=37.4
Q ss_pred CCCCCceeccccceEEE-----------ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChH
Q 023106 189 DPVEDDILVGLQHKVVI-----------VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLD 236 (287)
Q Consensus 189 ~~~~~~LSgGekqRv~I-----------~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~ 236 (287)
++.+.+||||||||++| .+|+++|||| .+++.+.++.. .++++|||++
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~ 124 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH
Confidence 56789999999999964 6899999999 45556665543 2569999985
No 187
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.96 E-value=4.5e-06 Score=68.59 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=25.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+|.+++|+|++||||||++++|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3699999999999999999999999987
No 188
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.94 E-value=2.1e-06 Score=82.79 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=36.3
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
|.++|+. .++++++++.+| +.+|+|+||||||||+.+|..++
T Consensus 43 L~i~nf~-----------~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 43 LEIRNLA-----------TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp EEEESBT-----------TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred eeccccc-----------ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 7777743 567889999999 99999999999999999998873
No 189
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.94 E-value=2.2e-06 Score=77.91 Aligned_cols=48 Identities=27% Similarity=0.484 Sum_probs=40.9
Q ss_pred cCchhhhhhhhhccccccccccccCCCeE--EEEECCCCCCHHHHHHHHHHHhc
Q 023106 81 RCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 81 ~~l~~~y~~~~~~~~~l~~vsl~i~~Gei--vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++++..||... +++.++..+..|++ +.|.||+|+||||+++++++.+.
T Consensus 22 ~~~~~~~g~~~----~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 22 ETLDEVYGQNE----VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SSGGGCCSCHH----HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CcHHHhcCcHH----HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 45566666655 78888888999988 99999999999999999999987
No 190
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.94 E-value=5e-06 Score=76.30 Aligned_cols=38 Identities=34% Similarity=0.465 Sum_probs=31.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
..+.+++|+|++|||||||++.|+|.+. +..| +.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~---~~~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT---ERGHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh---hcCCeEEEEee
Confidence 3588999999999999999999999987 7666 544443
No 191
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.92 E-value=4.7e-07 Score=92.82 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=52.6
Q ss_pred CCCCCCceeccccceEEE-----ec--CCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH--HHH-
Q 023106 188 GDPVEDDILVGLQHKVVI-----VD--GNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL- 243 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I-----~~--p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~--rvi- 243 (287)
.++.+.+|||||+|||.| .+ |.++|||| .+++.|+++.+ .+|+|+||++++.. |++
T Consensus 515 l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~ 594 (993)
T 2ygr_A 515 LSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVD 594 (993)
T ss_dssp TTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEE
T ss_pred cCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEE
Confidence 478899999999999999 44 68999999 34545554433 35799999998754 333
Q ss_pred ---------HHHhcCCCcHHHHH
Q 023106 244 ---------KRHISTGKPPDVAK 257 (287)
Q Consensus 244 ---------gr~i~~G~~~~~~~ 257 (287)
|++++.|+++++..
T Consensus 595 Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 595 IGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp ECSSSGGGCCSCCEEECHHHHHH
T ss_pred ecCccccCCCEEEEeeCHHHhhh
Confidence 46778888888754
No 192
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.88 E-value=6.8e-06 Score=70.41 Aligned_cols=48 Identities=15% Similarity=0.315 Sum_probs=33.5
Q ss_pred ccccc-ccccCCCeEEEEECCCCCCHHHHHHHH-HHHhcccCCCcc-eeeCCCC
Q 023106 96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEV-VRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 96 ~l~~v-sl~i~~GeivgIiGpNGsGKSTLlk~L-~Gll~~~~p~~G-i~~~g~~ 146 (287)
.|+.+ .--+++|++++|+||||||||||+..+ .+..+ ...+ +++....
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 34554 556889999999999999999996544 55544 4344 4555543
No 193
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.86 E-value=6.7e-06 Score=68.46 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=21.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+||||||||++.|+|..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999999974
No 194
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.86 E-value=1.2e-05 Score=66.38 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=32.8
Q ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-e-eeCC
Q 023106 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDS 144 (287)
Q Consensus 101 sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i-~~~g 144 (287)
.+...+|.++.|+|++||||||+++.|++.+. +..+ + ++++
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~---~~~~~~~~~~~ 49 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQ---KEGYRVEVLDG 49 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEEeeH
Confidence 34556899999999999999999999999987 6555 3 3443
No 195
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.85 E-value=4.4e-07 Score=92.81 Aligned_cols=69 Identities=20% Similarity=0.285 Sum_probs=51.9
Q ss_pred CCCCCCceeccccceEEE-----ec--CCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH--HHH-
Q 023106 188 GDPVEDDILVGLQHKVVI-----VD--GNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL- 243 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I-----~~--p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~--rvi- 243 (287)
.++.+.+|||||+|||.| .+ |.++|||| .+++.|+++.+ .+|+|+||++++.. |++
T Consensus 498 ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~ 577 (972)
T 2r6f_A 498 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLID 577 (972)
T ss_dssp SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEE
T ss_pred cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE
Confidence 467899999999999999 44 69999999 45555555544 35799999998754 433
Q ss_pred ---------HHHhcCCCcHHHH
Q 023106 244 ---------KRHISTGKPPDVA 256 (287)
Q Consensus 244 ---------gr~i~~G~~~~~~ 256 (287)
|++++.|+++++.
T Consensus 578 LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 578 IGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp ECSSSGGGCCSEEEEECTTTTT
T ss_pred eCCCccCCCCEEEEecCHHHHH
Confidence 4677788887764
No 196
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.85 E-value=6e-06 Score=69.83 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=31.8
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
+.+.+|.++.|+|++||||||+++.|++.+. |..|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~---~~~g 54 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV---RDRR 54 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH---HHHC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc---cccC
Confidence 5577899999999999999999999999997 6777
No 197
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.84 E-value=1.1e-05 Score=66.76 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=26.8
Q ss_pred ccccccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 99 ~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
++|+...+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999886
No 198
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.82 E-value=7.2e-06 Score=75.25 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=33.9
Q ss_pred ecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 80 ~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
++++.+.|+... ...+|++++++++ .|+|+|++|||||||++.|+|
T Consensus 11 l~~~~~~~~~~~-~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 11 IQRACTALGDHG-DSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp TTTTTTSCSSCC-SSCCC----CCCC---EEEEECBTTSSHHHHHHHHHT
T ss_pred HHHHHHhhCccc-cccccccccccCC---EEEEECCCCCcHHHHHHHHhC
Confidence 567777776421 1227899999998 899999999999999999999
No 199
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.81 E-value=1.8e-05 Score=66.84 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=25.7
Q ss_pred cccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 100 vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++++.+ .+.+|+|||||||||++.+|.-.+.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3444555 5899999999999999999987665
No 200
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.80 E-value=8.7e-06 Score=68.31 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=34.3
Q ss_pred HhccCCeEEEEcChHHHHHHHHHHHhcCCCcHHHHHHHHHhcCccchhhhcccCCCCCEEEeCCC
Q 023106 222 SSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 286 (287)
Q Consensus 222 ~~~~~~~i~vtHd~~~~~~rvigr~i~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~~ 286 (287)
...++.+|+++.+.+...+|+..|. |.+.+.+...+.. ..+... .+..||++|++..
T Consensus 121 ~~~~d~vi~l~~~~e~~~~Rl~~R~---~~~~e~~~~r~~~-q~~~~~----~~~~ad~vIdn~~ 177 (206)
T 1jjv_A 121 TALCDRILVVDVSPQTQLARSAQRD---NNNFEQIQRIMNS-QVSQQE----RLKWADDVINNDA 177 (206)
T ss_dssp GGGCSEEEEEECCHHHHHHHHC--------CHHHHHHHHHH-SCCHHH----HHHHCSEEEECCS
T ss_pred HhhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHh-cCChHH----HHHhCCEEEECCC
Confidence 4556778899999999988887653 5555555555443 223222 2346899998753
No 201
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.76 E-value=1.2e-05 Score=67.32 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G 129 (287)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 202
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.76 E-value=1.3e-05 Score=67.37 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=26.4
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
...+|.+++|+||+|||||||++.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998764
No 203
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.75 E-value=7e-06 Score=75.66 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=36.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+.+.++++.|+.+. ++++++|.| +|+|++|+|||||++.|.+..
T Consensus 17 ~v~~~~l~~~~~~k~----~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHHHTHH----HHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHhCCee----ecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 588999999998876 788888876 999999999999999987753
No 204
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.73 E-value=1.2e-05 Score=75.09 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=31.2
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHH--HHhcccCCC-----cc-eeeCCCC
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVV--RRINKIWPQ-----KA-SSFDSQD 146 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~--Gll~~~~p~-----~G-i~~~g~~ 146 (287)
-|++|++++|+||||||||||++.|+ ++++ ++ .+ +++++..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p---~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP---LDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC---cccCCCCCcEEEEeCCC
Confidence 57899999999999999999999554 4444 32 23 6677764
No 205
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.72 E-value=1.1e-05 Score=70.44 Aligned_cols=45 Identities=20% Similarity=0.224 Sum_probs=34.8
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
++.+.. ...++.++.|+|++||||||+.+.|+..+. .+ +++++..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHH
Confidence 445544 677899999999999999999999999764 23 4556543
No 206
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.63 E-value=3.2e-05 Score=63.48 Aligned_cols=28 Identities=39% Similarity=0.684 Sum_probs=24.4
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+|.+++|+|++||||||+.+.|+..+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999999999999999999987654
No 207
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.61 E-value=3.1e-05 Score=71.21 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=34.5
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eeeCCCC
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQD 146 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~~g~~ 146 (287)
-+++|+++.|.||||||||||+..++.... +..| +++++..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEeccc
Confidence 467999999999999999999999999887 6666 4566653
No 208
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.59 E-value=4.2e-05 Score=65.79 Aligned_cols=61 Identities=20% Similarity=0.246 Sum_probs=40.5
Q ss_pred cCCeEEEEcChHHHHHHHHHHHhcCCC--cHHHHHHHHHhcCccchh-hhcccCCCCC-EEEeCC
Q 023106 225 FDEKWFIEVDLDTAMQRVLKRHISTGK--PPDVAKWRIEYNDRPNAE-LIMKSKKNAD-LVIKSI 285 (287)
Q Consensus 225 ~~~~i~vtHd~~~~~~rvigr~i~~G~--~~~~~~~~~~~~~~~~~~-~i~~~~~~ad-~ii~~~ 285 (287)
.+.+|+++.+.+....|++.+...+|. +.+.+...+..++.+... ++.|....+| ++|+++
T Consensus 153 ~d~vi~L~a~~e~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~ 217 (236)
T 1q3t_A 153 AELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTT 217 (236)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCC
Confidence 455789999999999888766555552 444445555544555554 4566666666 888875
No 209
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.56 E-value=1.8e-05 Score=65.47 Aligned_cols=51 Identities=10% Similarity=-0.012 Sum_probs=38.2
Q ss_pred CCCCCCceeccccceEEE---------ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHH
Q 023106 188 GDPVEDDILVGLQHKVVI---------VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTA 238 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I---------~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~ 238 (287)
..+.+..||||||||++| .+|+++|||| .+.+.|.++... .|+|||+....
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~ 130 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM 130 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH
Confidence 456788999999999988 2368999999 455566655443 57999997654
No 210
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.53 E-value=5.3e-05 Score=61.04 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|+|++||||||+++.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998765
No 211
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.53 E-value=3.9e-05 Score=62.45 Aligned_cols=26 Identities=38% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+|..++|+|++|+|||||++.|++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999999864
No 212
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.53 E-value=3.6e-05 Score=69.00 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=24.3
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++.+++|+|++|+|||||++.|.|..
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3456689999999999999999999864
No 213
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.48 E-value=1.9e-05 Score=65.84 Aligned_cols=33 Identities=21% Similarity=0.140 Sum_probs=29.3
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
+++++++..++.. ++|+|++|+|||||++.+.+
T Consensus 15 ~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 7889999988874 78999999999999999875
No 214
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.46 E-value=7.3e-05 Score=64.83 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=26.0
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.++++.+++| +.|.||+|+|||||++.|++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455666666666 88999999999999999999875
No 215
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.46 E-value=6e-05 Score=62.25 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=20.8
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
+++++++..++. .++|+|++|+|||||++.+.+-
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 678888887776 6789999999999999999873
No 216
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.45 E-value=2e-05 Score=80.01 Aligned_cols=68 Identities=15% Similarity=0.245 Sum_probs=49.6
Q ss_pred CCCCCceeccccceEEE-----ecC--CEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH--HHH--
Q 023106 189 DPVEDDILVGLQHKVVI-----VDG--NYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL-- 243 (287)
Q Consensus 189 ~~~~~~LSgGekqRv~I-----~~p--~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~--rvi-- 243 (287)
++.+.+|||||+|||.| .+| .++|||| .+++.|+.+.+ .+|+|+||++++.. |++
T Consensus 374 ~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~l 453 (842)
T 2vf7_A 374 DRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDV 453 (842)
T ss_dssp TCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred cCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEe
Confidence 67889999999999998 555 5999999 34444444443 35799999997643 333
Q ss_pred --------HHHhcCCCcHHHH
Q 023106 244 --------KRHISTGKPPDVA 256 (287)
Q Consensus 244 --------gr~i~~G~~~~~~ 256 (287)
|++++.|+++++.
T Consensus 454 gpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 454 GPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp CSSSGGGCCSEEEEECGGGGG
T ss_pred CCCcccCCCEEEEecCHHHHH
Confidence 4567778877764
No 217
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.41 E-value=8.9e-05 Score=61.26 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=23.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++|+|++|||||||++.|.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999999876
No 218
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.40 E-value=9.7e-05 Score=60.08 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998775
No 219
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.38 E-value=3.5e-05 Score=74.19 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=40.1
Q ss_pred CCCCCce-eccccceEEE-----ecC--CEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH
Q 023106 189 DPVEDDI-LVGLQHKVVI-----VDG--NYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 189 ~~~~~~L-SgGekqRv~I-----~~p--~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
.+.+..| ||||+|||+| .+| ++||||| .+.+.|.++.+ .+|+||||++.+..
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~ 463 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 463 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHH
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 4567888 9999999988 788 9999999 34555555432 35799999997754
No 220
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.37 E-value=0.00012 Score=60.20 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=24.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999987654
No 221
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.37 E-value=0.00012 Score=61.84 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
++-+++|+|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 222
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.36 E-value=0.00011 Score=60.14 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|.++.|.|++||||||+++.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998765
No 223
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.36 E-value=3.8e-05 Score=68.25 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=26.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
...+.|.||+|+|||||++.|++.+. +..+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~---~~~~ 76 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF---DTEE 76 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH---SCGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc---CCCc
Confidence 36899999999999999999999987 6655
No 224
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.36 E-value=7.9e-05 Score=59.91 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|++|+|||||++.++|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998854
No 225
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.36 E-value=0.00012 Score=60.71 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|+|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999775
No 226
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.35 E-value=0.00012 Score=63.80 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++|+||+|||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3789999999999999999998765
No 227
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.34 E-value=5.6e-05 Score=72.15 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=36.8
Q ss_pred ecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 80 ~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++++...|.... .++++++.+++| +.|+||+|+|||||++.|++...
T Consensus 28 l~e~v~~l~~~~----~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 28 LKEVVEFLKDPS----KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHHHHHHHHCTH----HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHhhChH----HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 444444454433 677888888888 77999999999999999999875
No 228
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.34 E-value=0.0001 Score=68.68 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.9
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+..|..++|+|+||+|||||++.|+|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5567889999999999999999999987
No 229
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.33 E-value=0.00011 Score=59.94 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998775
No 230
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.32 E-value=0.00013 Score=59.65 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=25.2
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.++.++.|+|++||||||+++.|+..+.
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 44678899999999999999999987664
No 231
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.32 E-value=0.00013 Score=63.16 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=41.8
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCC--CcHHHHHHHHHhcCccchh-hhcccCCCCC-EEEeCCC
Q 023106 226 DEKWFIEVDLDTAMQRVLKRHISTG--KPPDVAKWRIEYNDRPNAE-LIMKSKKNAD-LVIKSID 286 (287)
Q Consensus 226 ~~~i~vtHd~~~~~~rvigr~i~~G--~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad-~ii~~~~ 286 (287)
+-.||++-+++...+|+..+....| ...+-+...+..++..... +..|.+...| ++|++++
T Consensus 147 ~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~ 211 (233)
T 3r20_A 147 DVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSD 211 (233)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTT
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCC
Confidence 3458999999999998886665443 3444455555556555554 6677777766 9998764
No 232
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.32 E-value=0.00014 Score=67.00 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=35.8
Q ss_pred CCCCceeccccceEEE-----------ec-CCEEeEec-----------chHHHHHhccC--CeEEEEcChHH
Q 023106 190 PVEDDILVGLQHKVVI-----------VD-GNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDT 237 (287)
Q Consensus 190 ~~~~~LSgGekqRv~I-----------~~-p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~ 237 (287)
+.+..|||||+||++| .+ |+++|||| .+++.|.++.. .++++||+++.
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~ 348 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHREL 348 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGG
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHH
Confidence 3457899999999843 57 99999999 45566666433 35799999863
No 233
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.28 E-value=0.00013 Score=58.52 Aligned_cols=19 Identities=37% Similarity=0.695 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEV 127 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L 127 (287)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 234
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.27 E-value=0.00019 Score=59.71 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|.+|+|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477999999999999999999999876
No 235
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.25 E-value=0.00016 Score=59.84 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
+..+|+|+|++||||||+.+.|+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3568999999999999999999874
No 236
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.25 E-value=9.4e-05 Score=70.02 Aligned_cols=37 Identities=16% Similarity=0.366 Sum_probs=33.9
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.|+++..-+.+|+++.|.|++|+|||||+..|++...
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5777877899999999999999999999999999876
No 237
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.25 E-value=0.0002 Score=58.68 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.+|+|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999987654
No 238
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.24 E-value=0.00022 Score=60.68 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=43.1
Q ss_pred HHHhccCCeEEEEcChHHHHHHHHHHHhcCCCcHHHHHHHHHhcCccchhhhcccCCCCCEEEeCC
Q 023106 220 DVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 285 (287)
Q Consensus 220 ~l~~~~~~~i~vtHd~~~~~~rvigr~i~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~ 285 (287)
.+..+++.+|+|+.+.+...+|+..|. |.+.+.+..++. ...|..+ ....||+||+|.
T Consensus 127 ~~~~~~D~vi~V~ap~e~r~~Rl~~Rd---g~s~eea~~ri~-~Q~~~ee----k~~~AD~VIdN~ 184 (210)
T 4i1u_A 127 NWKARCDRVLVVDCPVDTQIARVMQRN---GFTREQVEAIIA-RQATREA----RLAAADDVIVND 184 (210)
T ss_dssp HHHHHCSEEEEEECCHHHHHHHHHHHH---CCCHHHHHHHHH-HSCCHHH----HHHTCSEEEECS
T ss_pred CccccCCeEEEEECCHHHHHHHHHhcC---CCCHHHHHHHHH-HcCChHH----HHHhCCEEEECC
Confidence 356678889999999999998988775 777776666554 3445433 357899999876
No 239
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.24 E-value=0.00018 Score=59.66 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+|-+|+|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998865
No 240
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.23 E-value=0.0002 Score=59.03 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=25.0
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++.+++|+|+.||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999988764
No 241
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.23 E-value=6.9e-05 Score=62.79 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999886
No 242
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.23 E-value=9.4e-05 Score=61.13 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=25.7
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+..+.+|+|+|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344577999999999999999999998764
No 243
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.23 E-value=0.00015 Score=59.14 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|++|+|||||++.|+|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999984
No 244
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.22 E-value=0.0002 Score=59.52 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|.|++||||||+.+.|++.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999999765
No 245
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.21 E-value=0.00019 Score=71.30 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=27.3
Q ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 101 sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++++.++..++|+|++|+|||||++.|++...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence 45678999999999999999999999998765
No 246
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.20 E-value=0.00022 Score=58.33 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.++.|+|++||||||+.+.|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998765
No 247
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.20 E-value=0.00022 Score=59.56 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=25.3
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+|.+|+|.|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999998765
No 248
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.19 E-value=0.00018 Score=65.97 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=26.3
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+++|+++.|.||||||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999888876654
No 249
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.17 E-value=0.00024 Score=58.42 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=23.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++|+|++|||||||+..|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3799999999999999999999886
No 250
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.17 E-value=0.00022 Score=57.83 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~G 129 (287)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 251
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.16 E-value=0.0002 Score=72.68 Aligned_cols=32 Identities=34% Similarity=0.490 Sum_probs=29.2
Q ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 101 sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|.+.+|..+.|+||||||||||+++|++.+.
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 35688999999999999999999999999875
No 252
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.16 E-value=0.00025 Score=66.76 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=29.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eee
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSF 142 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~ 142 (287)
++.+++++|+|||||||++..|+..+. +..+ +.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~---~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK---KRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH---HTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEE
Confidence 589999999999999999999999998 6655 544
No 253
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.16 E-value=0.00023 Score=59.44 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=25.5
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..+|.+|+|.|+.||||||+.+.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999998775
No 254
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.12 E-value=0.0002 Score=58.42 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=19.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.++.|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999987654
No 255
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.11 E-value=0.0003 Score=62.55 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=25.4
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
....|.++.|+||+|||||||.+.|+..+
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44568899999999999999999998765
No 256
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.11 E-value=0.00018 Score=58.88 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998853
No 257
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.10 E-value=0.00027 Score=57.84 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999875
No 258
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.09 E-value=0.00032 Score=57.76 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|.|+.||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999874
No 259
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.07 E-value=0.00037 Score=58.91 Aligned_cols=27 Identities=41% Similarity=0.596 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|-++.|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999998765
No 260
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.07 E-value=0.00029 Score=58.76 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.|+||+|||||||++.|....+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999877653
No 261
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.07 E-value=0.00031 Score=62.62 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=27.9
Q ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 101 sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.+.++..+.|.||+|+|||||++.|++.+.
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 34567888999999999999999999999765
No 262
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.05 E-value=0.00032 Score=66.05 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.-.++|+|+||+|||||++.|+|..
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 3589999999999999999999975
No 263
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.04 E-value=0.00045 Score=57.46 Aligned_cols=28 Identities=39% Similarity=0.618 Sum_probs=24.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..+-+|+|+|+.||||||+.+.|+..+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999988764
No 264
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.03 E-value=0.00046 Score=56.42 Aligned_cols=26 Identities=38% Similarity=0.641 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.+++|+|+.||||||+.+.|+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999988664
No 265
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.02 E-value=0.00043 Score=55.81 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
=++++|+|+.||||||+.+.|+..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998765
No 266
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.01 E-value=0.0004 Score=64.14 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.-++|+|++|||||||++.|++.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 566789999999999999999998876
No 267
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.01 E-value=0.00051 Score=57.06 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=24.5
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-.+..+|+|+|+.||||||+.+.|+..+.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34567899999999999999999987653
No 268
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.98 E-value=0.00047 Score=56.50 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998774
No 269
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.97 E-value=0.00047 Score=57.88 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987654
No 270
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.97 E-value=0.00035 Score=59.81 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-.|+|+|++|+|||||++.|+|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCc
Confidence 4689999999999999999998654
No 271
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.96 E-value=0.00042 Score=55.86 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|+|+.||||||+.+.|+..+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988764
No 272
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.95 E-value=0.0004 Score=56.79 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+|+|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999988765
No 273
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.94 E-value=0.00044 Score=58.81 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++.++.|+|+.||||||+.+.|+..+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999987654
No 274
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.94 E-value=0.00057 Score=54.85 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988664
No 275
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.92 E-value=0.00045 Score=58.46 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998775
No 276
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.89 E-value=0.00056 Score=57.47 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987653
No 277
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.87 E-value=0.00065 Score=56.84 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
...++||+|+.||||||+.+.|+..+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999988643
No 278
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.86 E-value=0.00079 Score=58.14 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=24.7
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++-+++|+||.||||||+.+.|+..+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999987654
No 279
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.86 E-value=0.00042 Score=60.69 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-.++|+|++|||||||++.|+|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3689999999999999999999753
No 280
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.85 E-value=0.00077 Score=58.79 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.+|.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998764
No 281
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.80 E-value=0.0011 Score=56.71 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=27.0
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-.+.+..++.|+||+||||+|..+.|+..+.
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4556788999999999999999999998765
No 282
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.79 E-value=0.00048 Score=63.38 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=21.3
Q ss_pred CeE-EEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHI-VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 Gei-vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|.. ++|+|++|||||||++.|+|...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc
Confidence 444 99999999999999999998654
No 283
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.00089 Score=54.68 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+.-.++|+|+.|+|||||++.|.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34479999999999999999998854
No 284
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.73 E-value=0.00097 Score=56.68 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987654
No 285
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.72 E-value=0.00026 Score=65.18 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=25.8
Q ss_pred ccccccccCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 97 l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
+++..+++.+ .+..|+|+|||||||++..|.=
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 3455666666 4889999999999999999874
No 286
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.70 E-value=0.0009 Score=59.18 Aligned_cols=55 Identities=22% Similarity=0.492 Sum_probs=37.9
Q ss_pred hccCCeEEEEcChHHHHHHHHHHHhcCCCcHHHHHHHHHhcCccchhhhcccCCCCCEEEeCC
Q 023106 223 SMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 285 (287)
Q Consensus 223 ~~~~~~i~vtHd~~~~~~rvigr~i~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~ 285 (287)
..++.+|+++.+.+.+.+|+..|. |.+.+.+...+... .+...++ ..||++|++.
T Consensus 198 ~~~d~vI~l~a~~ev~~~Rl~~R~---g~s~e~~~~ri~~q-~~~~~~~----~~AD~vIdn~ 252 (281)
T 2f6r_A 198 SMVHEVWTVVIPETEAVRRIVERD---GLSEAAAQSRLQSQ-MSGQQLV----EQSNVVLSTL 252 (281)
T ss_dssp GGCSEEEEEECCHHHHHHHHHHHH---CCCHHHHHHHHHTS-CCHHHHH----HTCSEEEECS
T ss_pred HhCCEEEEEcCCHHHHHHHHHHcC---CCCHHHHHHHHHHc-CChHhhH----hhCCEEEECC
Confidence 456778899999999998888764 55666555555543 4444443 3589999875
No 287
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.69 E-value=0.00093 Score=56.44 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|-++.|+|+.||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988764
No 288
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.67 E-value=0.0012 Score=60.08 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=26.2
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-+++|+++.|.||+|+|||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999999886
No 289
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.67 E-value=0.0012 Score=60.69 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
|..++|+|.+|+|||||++.|++.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999984
No 290
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.66 E-value=0.0011 Score=52.36 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 291
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.65 E-value=0.0013 Score=55.37 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999998876
No 292
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.64 E-value=0.0014 Score=59.64 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.7
Q ss_pred CCe--EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKH--IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~Ge--ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+. .+.|.||+|+|||||++.+++.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 456 899999999999999999999987
No 293
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.64 E-value=0.0012 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998753
No 294
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.63 E-value=0.00085 Score=64.46 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=27.9
Q ss_pred ccccccCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 99 ~vsl~i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
.+++++.++..+.|+|++||||||+++.|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 3678888999999999999999999998875
No 295
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.61 E-value=0.0012 Score=60.26 Aligned_cols=25 Identities=32% Similarity=0.721 Sum_probs=22.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999998765
No 296
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.61 E-value=0.00033 Score=65.67 Aligned_cols=49 Identities=8% Similarity=0.037 Sum_probs=37.2
Q ss_pred CCCCceeccccceEEE----e-----cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHH
Q 023106 190 PVEDDILVGLQHKVVI----V-----DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 190 ~~~~~LSgGekqRv~I----~-----~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
+.+..||||||++++| . +|+++|||| .+++.|.++.. .++++||+....
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~ 400 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF 400 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH
Confidence 4567799999999988 2 689999999 45566666543 357999997654
No 297
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.61 E-value=0.0013 Score=51.75 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+-.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999988643
No 298
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.60 E-value=0.0012 Score=52.05 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998753
No 299
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.60 E-value=0.0011 Score=55.74 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=36.6
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCC--cHHHHHHHHHhcCccchh-hhcccCCCCC-EEEeCC
Q 023106 226 DEKWFIEVDLDTAMQRVLKRHISTGK--PPDVAKWRIEYNDRPNAE-LIMKSKKNAD-LVIKSI 285 (287)
Q Consensus 226 ~~~i~vtHd~~~~~~rvigr~i~~G~--~~~~~~~~~~~~~~~~~~-~i~~~~~~ad-~ii~~~ 285 (287)
+.+|+++.+.+...+|++.+...+|. +.+.+...+...+.+... .+.+....+| ++|+++
T Consensus 137 ~~vi~l~a~~e~~~~R~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~ 200 (219)
T 2h92_A 137 DLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTT 200 (219)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECT
T ss_pred CEEEEEECCHHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECC
Confidence 44689999999998887754444553 444444545433323332 3445555576 999865
No 300
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.60 E-value=0.0011 Score=51.95 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 301
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.59 E-value=0.00077 Score=57.67 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=22.7
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
.+..|+.+.|+||+||||||++.++..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 345799999999999999998876654
No 302
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.59 E-value=0.0012 Score=55.51 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988654
No 303
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.58 E-value=0.0013 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998864
No 304
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.58 E-value=0.0016 Score=55.60 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.++.|+|+.||||||+.+.|+..+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 466899999999999999999998765
No 305
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.58 E-value=0.0016 Score=55.40 Aligned_cols=28 Identities=39% Similarity=0.510 Sum_probs=25.4
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+|.+|.|.|+.||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999886
No 306
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.58 E-value=0.002 Score=53.37 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=23.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..+.|.||+|+|||||++.|+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999999876
No 307
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.56 E-value=0.0011 Score=59.97 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=25.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..+..+.|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999999886
No 308
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.56 E-value=0.0013 Score=52.60 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+.-.++|+|+.|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35668999999999999999999774
No 309
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.56 E-value=0.0012 Score=56.70 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=22.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+|.+|.|.|+.||||||+++.|+..+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999998886
No 310
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.56 E-value=0.0015 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 311
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.55 E-value=0.001 Score=58.69 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|++|+|||||++.|+|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 468999999999999999999853
No 312
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.55 E-value=0.0015 Score=52.41 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999988753
No 313
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.55 E-value=0.0013 Score=51.93 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 314
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.54 E-value=0.00069 Score=56.62 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999998876
No 315
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.54 E-value=0.0014 Score=51.80 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 316
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.54 E-value=0.0014 Score=52.48 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 317
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.53 E-value=0.002 Score=51.14 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4557999999999999999999764
No 318
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.52 E-value=0.0013 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999873
No 319
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.52 E-value=0.0013 Score=52.19 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 320
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.49 E-value=0.0013 Score=52.53 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 368999999999999999998753
No 321
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.48 E-value=0.001 Score=59.72 Aligned_cols=23 Identities=26% Similarity=0.606 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.|.||+|+|||||++.+++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999999874
No 322
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.47 E-value=0.0015 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 323
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.47 E-value=0.0018 Score=57.05 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++..+.|.||+|+|||||++.|++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 466889999999999999999999765
No 324
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.46 E-value=0.0016 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 325
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.46 E-value=0.0016 Score=56.28 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=25.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|.++.|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999999886
No 326
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.45 E-value=0.0018 Score=52.22 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.|.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
No 327
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.44 E-value=0.0014 Score=52.00 Aligned_cols=22 Identities=45% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++|+|+.|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5889999999999999998754
No 328
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.43 E-value=0.0025 Score=51.78 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.-.++|+|+.|+|||||++.|.+..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4569999999999999999998863
No 329
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.43 E-value=0.0024 Score=51.33 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999998875
No 330
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.43 E-value=0.0019 Score=52.76 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998843
No 331
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.42 E-value=0.0019 Score=52.23 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998743
No 332
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.42 E-value=0.0019 Score=55.38 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|.+++|.|+.||||||+++.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998874
No 333
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.42 E-value=2.4e-05 Score=72.06 Aligned_cols=66 Identities=14% Similarity=-0.036 Sum_probs=44.6
Q ss_pred CCCCC-ceeccccceEEE--------------ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHHHH
Q 023106 189 DPVED-DILVGLQHKVVI--------------VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQRV 242 (287)
Q Consensus 189 ~~~~~-~LSgGekqRv~I--------------~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~rv 242 (287)
++.+. .||+|||||++| .+|++||||| .+++.+.++....|++||+ +....++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~~~~~i 337 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-APGAALT 337 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CTTCSEE
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cccCCEE
Confidence 55666 799999999988 3799999999 4566666654233577784 3311133
Q ss_pred H----HHHhcCCCcHHH
Q 023106 243 L----KRHISTGKPPDV 255 (287)
Q Consensus 243 i----gr~i~~G~~~~~ 255 (287)
+ |+++..|+++++
T Consensus 338 ~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 338 LRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEETTEEEECCCTTTS
T ss_pred EEEECCEEEecCCHHHH
Confidence 3 677777777654
No 334
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.39 E-value=0.002 Score=52.31 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-.++|+|+.|+|||||++.+.|...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3689999999999999999988654
No 335
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.39 E-value=0.0022 Score=54.20 Aligned_cols=24 Identities=42% Similarity=0.707 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.|+||+||||+|..+.|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998765
No 336
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.39 E-value=0.0013 Score=53.59 Aligned_cols=25 Identities=28% Similarity=0.427 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
..-.++|+|+.|+|||||++.|.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999875
No 337
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.39 E-value=0.001 Score=52.71 Aligned_cols=23 Identities=43% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|+.|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999987643
No 338
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.38 E-value=0.0022 Score=50.62 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999997643
No 339
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.37 E-value=0.0021 Score=52.23 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.|.+-.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 478999999999999999998753
No 340
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.37 E-value=0.0013 Score=53.55 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
+.-.++|+|++|+|||||++.+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999998875
No 341
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.37 E-value=0.002 Score=54.70 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=25.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|.+|.|-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999999886
No 342
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.37 E-value=0.0014 Score=53.22 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 378999999999999999998754
No 343
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.37 E-value=0.0022 Score=51.62 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.|+|+|+.|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 468999999999999999998743
No 344
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.36 E-value=0.0019 Score=57.06 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 345
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.36 E-value=0.0017 Score=56.17 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.-.|+|+|.+|+|||||++.|.|.-
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4579999999999999999998854
No 346
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.36 E-value=0.0026 Score=54.46 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=25.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+|.+|.|.|+.||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999999886
No 347
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.36 E-value=0.0022 Score=51.18 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 348
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.36 E-value=0.0013 Score=60.00 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=23.4
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
...-.++|+|+||+|||||++.|+|..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356689999999999999999998754
No 349
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.34 E-value=0.0023 Score=51.31 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999998753
No 350
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.34 E-value=0.0022 Score=55.97 Aligned_cols=29 Identities=38% Similarity=0.576 Sum_probs=25.1
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+..+.-+.|.||+|+|||||++.|+..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34566799999999999999999998875
No 351
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.34 E-value=0.0021 Score=58.12 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++.|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998764
No 352
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.34 E-value=0.0013 Score=52.58 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998764
No 353
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.33 E-value=0.002 Score=51.37 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 354
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.33 E-value=0.002 Score=59.40 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+||+|++|+|||||++.|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999974
No 355
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.33 E-value=0.0024 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|++|+|||||++.+.+-
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999877664
No 356
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.32 E-value=0.0021 Score=60.00 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=24.8
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+.-..+.++.|+|++||||||+.+.|+..+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 344567899999999999999999987543
No 357
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.31 E-value=0.0021 Score=51.40 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 358
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.30 E-value=0.0025 Score=51.09 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 359
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.29 E-value=0.0022 Score=52.64 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.|+|+|+.|+|||||++.+.+-.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998753
No 360
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.29 E-value=0.0024 Score=53.24 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.|.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998864
No 361
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.29 E-value=0.0012 Score=66.89 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=29.9
Q ss_pred cccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 100 vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++.+.++..+.|.||||+|||||+++|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 356778999999999999999999999999986
No 362
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.29 E-value=0.0025 Score=52.45 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998854
No 363
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.28 E-value=0.0019 Score=57.70 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++|+|.+|+|||||++.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 364
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.28 E-value=0.0024 Score=53.47 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
--+++|+|+.|+|||||++.|++.+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999988764
No 365
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.28 E-value=0.0016 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998753
No 366
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.27 E-value=0.0027 Score=54.10 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=26.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999999999987
No 367
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.26 E-value=0.0024 Score=51.98 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 368
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.26 E-value=0.0029 Score=50.77 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999998764
No 369
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.26 E-value=0.0027 Score=51.17 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
--.++|+|+.|+|||||++.+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999865
No 370
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.25 E-value=0.002 Score=57.61 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
--+|+|+|..|+|||||++.|.|.-
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4589999999999999999999853
No 371
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.25 E-value=0.0024 Score=51.56 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
--.++|+|+.|+|||||++.+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3478999999999999999998753
No 372
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.24 E-value=0.0024 Score=51.85 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 373
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.24 E-value=0.0027 Score=51.67 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
No 374
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.24 E-value=0.002 Score=58.01 Aligned_cols=29 Identities=17% Similarity=0.428 Sum_probs=26.2
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-+++|+++.|.||+|+|||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 57899999999999999999999888764
No 375
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.22 E-value=0.003 Score=56.94 Aligned_cols=26 Identities=27% Similarity=0.661 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.+++|+||+|||||||...|+..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45899999999999999999987654
No 376
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.22 E-value=0.0029 Score=50.87 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998864
No 377
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.21 E-value=0.002 Score=56.16 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|.+|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 378
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.20 E-value=0.002 Score=51.94 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.7
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
.+.-.++|+|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999998864
No 379
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.20 E-value=0.0013 Score=57.00 Aligned_cols=34 Identities=35% Similarity=0.551 Sum_probs=26.9
Q ss_pred ccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 97 l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.++.+...+| +.|.||+|+|||||++.|+..+.
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 34444555566 67999999999999999999875
No 380
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.20 E-value=0.0028 Score=52.62 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=24.6
Q ss_pred cccccccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 98 ~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++.|.-...-.++|+|+.|+|||||++.+.+-
T Consensus 16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 444444445568999999999999999999874
No 381
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.19 E-value=0.0026 Score=57.89 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.++.|+||.|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 466899999999999999999987664
No 382
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.19 E-value=0.003 Score=52.02 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|.+|+|||||++.+.|.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999875
No 383
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.19 E-value=0.0024 Score=57.10 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+..+.|.||+|+|||||++.|++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 356788999999999999999999885
No 384
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.19 E-value=0.0027 Score=52.01 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 385
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.19 E-value=0.0021 Score=57.88 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=37.9
Q ss_pred CccEEEecCchhhhhhh--------hhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 74 EIPVVEARCMDEVYDAL--------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 74 ~~~~i~~~~l~~~y~~~--------~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
+.+++....-+..+-.. -.....+++..+++ .|.-+.|+|++|+|||||+..|.+
T Consensus 104 ~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 104 ETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 45677666544333111 11123567777777 788999999999999999999887
No 386
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.18 E-value=0.0029 Score=60.06 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=30.2
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++.+ +.+-+|+.++|+|++|+|||||++.|+....
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 44444 5677899999999999999999999988765
No 387
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.16 E-value=0.0033 Score=53.01 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=26.7
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+...-+++ .|..+.|+||+|+|||||...|+....
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 344433343 578899999999999999998876543
No 388
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.15 E-value=0.0023 Score=55.35 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.-.|+|+|+.|+|||||++.|.|.-
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999998753
No 389
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.14 E-value=0.0031 Score=50.69 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 455678999999999999999998875
No 390
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.14 E-value=0.0026 Score=59.85 Aligned_cols=31 Identities=35% Similarity=0.546 Sum_probs=26.2
Q ss_pred cccCC--CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 102 SNVNV--KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 102 l~i~~--GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|.+.+ ..+++|+|++|+||||++..|++.+.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44443 36999999999999999999999886
No 391
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.13 E-value=0.0034 Score=51.05 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998864
No 392
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.13 E-value=0.003 Score=50.68 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
--.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999874
No 393
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.13 E-value=0.003 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999998853
No 394
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.13 E-value=0.0026 Score=57.16 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=30.6
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.|+.+.--+.+|+++.|.|++|+|||||+..++....
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4566666689999999999999999999988876543
No 395
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.13 E-value=0.0037 Score=51.02 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 347999999999999999999874
No 396
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.13 E-value=0.0034 Score=51.22 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998743
No 397
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.003 Score=51.59 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 368999999999999999998865
No 398
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.12 E-value=0.0039 Score=51.32 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+.-.++|+|+.|+|||||++.+.+..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34579999999999999999998743
No 399
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.11 E-value=0.0016 Score=56.70 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=24.4
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++.+|+|.|+.||||||+++.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4688999999999999999999987763
No 400
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.11 E-value=0.0035 Score=51.09 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCC
Confidence 34579999999999999999998743
No 401
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.10 E-value=0.0032 Score=51.92 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+.-.++|+|+.|+|||||++.+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 45579999999999999999998854
No 402
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.10 E-value=0.0028 Score=55.22 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|++|+|||||++.|+|..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999854
No 403
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.10 E-value=0.0036 Score=51.17 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998753
No 404
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.09 E-value=0.0036 Score=50.79 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
--.++|+|+.|+|||||++.+.+..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3579999999999999999998753
No 405
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.07 E-value=0.0032 Score=52.39 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|++|+|||||++.+.+..
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999887753
No 406
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.06 E-value=0.0046 Score=53.01 Aligned_cols=28 Identities=39% Similarity=0.557 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
....-+.|.||+|+|||||++.|+..+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445578999999999999999999765
No 407
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.06 E-value=0.0031 Score=51.07 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=22.4
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+.-.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999988643
No 408
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.05 E-value=0.0057 Score=57.63 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=25.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999887
No 409
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.03 E-value=0.0035 Score=51.76 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 410
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.03 E-value=0.0048 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999875
No 411
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.03 E-value=0.0033 Score=51.69 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 412
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.02 E-value=0.0019 Score=53.38 Aligned_cols=23 Identities=43% Similarity=0.434 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|++|+|||||++.+.|.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999998764
No 413
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.00 E-value=0.0036 Score=58.92 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+..+.|.||+|+|||||+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999875
No 414
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.00 E-value=0.0048 Score=55.47 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.++.|+||+|||||||...|+..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 46899999999999999999988764
No 415
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.00 E-value=0.0051 Score=51.81 Aligned_cols=26 Identities=35% Similarity=0.667 Sum_probs=24.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|.+|+|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999999886
No 416
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.00 E-value=0.0047 Score=51.03 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
..-.|+|+|+.|+|||||++.+.+-.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45579999999999999999998753
No 417
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.98 E-value=0.0044 Score=50.55 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 347899999999999999988774
No 418
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.98 E-value=0.003 Score=55.49 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|..|||||||++.|+|..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 419
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.97 E-value=0.0029 Score=56.10 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++|+|+.|+|||||++.|+|.
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred eEEEEcCCCCCHHHHHHHHHCC
Confidence 6999999999999999999986
No 420
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.97 E-value=0.0044 Score=51.48 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
No 421
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.97 E-value=0.0043 Score=56.83 Aligned_cols=29 Identities=31% Similarity=0.558 Sum_probs=25.8
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|.++.|.|++|+|||||+..++....
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 77999999999999999999988876654
No 422
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.97 E-value=0.0038 Score=52.04 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998853
No 423
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.96 E-value=0.0048 Score=53.10 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
--.+||+|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC
Confidence 34789999999999999999988765
No 424
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.004 Score=50.55 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999853
No 425
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.93 E-value=0.0036 Score=56.07 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=25.2
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-+++|+++.|.|++|+|||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999999888764
No 426
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.90 E-value=0.0042 Score=52.11 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
--.++|+|..|+|||||++.++....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999999887754
No 427
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.90 E-value=0.0029 Score=52.22 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999998754
No 428
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.89 E-value=0.0041 Score=56.58 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=30.6
Q ss_pred ccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 97 l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|+.+.--+.+|+++.|.|++|+|||||+..++....
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 455555788999999999999999999998887765
No 429
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.89 E-value=0.0024 Score=56.00 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++|+|.+|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988653
No 430
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.88 E-value=0.0061 Score=55.56 Aligned_cols=29 Identities=34% Similarity=0.493 Sum_probs=25.2
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-.+.-+++|+|+.|+|||||+..|++.+.
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567999999999999999999998874
No 431
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.84 E-value=0.0028 Score=51.95 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998764
No 432
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.84 E-value=0.0047 Score=50.93 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+-.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998743
No 433
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.84 E-value=0.0037 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 434
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.82 E-value=0.0049 Score=52.29 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.6
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVV 128 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~ 128 (287)
=+++|+++.|.|++|+|||||+..++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 36799999999999999999986554
No 435
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.82 E-value=0.0043 Score=51.64 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.|+|+|+.|+|||||++.+.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999998864
No 436
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.81 E-value=0.0017 Score=54.34 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.-.++|+|+.|+|||||++.|.|..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999998863
No 437
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.80 E-value=0.0031 Score=50.78 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=9.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998764
No 438
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.80 E-value=0.0047 Score=52.16 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.-.++|+|+.|+|||||++.+.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999875
No 439
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.80 E-value=0.0034 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
..-.|+|+|+.|+|||||++.+.+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998764
No 440
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.79 E-value=0.0053 Score=50.07 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 441
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.78 E-value=0.0025 Score=51.94 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+.-.++|+|+.|+|||||++.+.+..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998765
No 442
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.71 E-value=0.0065 Score=56.57 Aligned_cols=25 Identities=32% Similarity=0.682 Sum_probs=22.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++|+||+|||||||...|+..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999998765
No 443
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.70 E-value=0.0044 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999998763
No 444
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.70 E-value=0.0056 Score=50.19 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=20.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4557999999999999999988754
No 445
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.68 E-value=0.006 Score=50.40 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 36899999999999999998764
No 446
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.67 E-value=0.0044 Score=54.42 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|..|+|||||++.|.|..
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 479999999999999999999864
No 447
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.0064 Score=51.04 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 448
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.66 E-value=0.0026 Score=60.03 Aligned_cols=24 Identities=50% Similarity=0.724 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+.|.||+|+|||||++.|+..+.
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 488999999999999999999876
No 449
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.66 E-value=0.0072 Score=49.88 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=20.8
Q ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLA-AEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLl-k~L~Gll 131 (287)
+|.++.|.||.|+||||++ +++..+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999997 5544443
No 450
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.66 E-value=0.0047 Score=50.71 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 368999999999999999887744
No 451
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.65 E-value=0.005 Score=53.50 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.-.++|+|..|+|||||++.|.|..
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999998853
No 452
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.61 E-value=0.0065 Score=50.32 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 457899999999999999988763
No 453
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.59 E-value=0.0077 Score=49.49 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.|.||.|+|||||++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 388999999999999999988764
No 454
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.58 E-value=0.0059 Score=51.51 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|.+|+|||||++.+.|.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998863
No 455
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.56 E-value=0.0055 Score=53.61 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..++|+|.+|+|||||++.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5899999999999999999998643
No 456
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.55 E-value=0.0084 Score=53.12 Aligned_cols=29 Identities=34% Similarity=0.540 Sum_probs=24.2
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.....+.|.||+|+|||+|++.|+..+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33445677889999999999999999875
No 457
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.55 E-value=0.0081 Score=50.25 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998874
No 458
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.55 E-value=0.0056 Score=53.37 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.|.|..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998753
No 459
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.54 E-value=0.007 Score=54.64 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=24.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998874
No 460
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.54 E-value=0.0087 Score=49.03 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
.+.-.++|+|+.|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999998864
No 461
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.51 E-value=0.0031 Score=51.74 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=5.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.-.++|+|+.|+|||||++.+.+.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999988876
No 462
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.49 E-value=0.0087 Score=49.31 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
.|.-+.|.|++|+|||||...|..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999887765
No 463
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.49 E-value=0.0089 Score=52.65 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.-+.|.||+|+|||||++.++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 455789999999999999999998875
No 464
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.47 E-value=0.0094 Score=49.32 Aligned_cols=25 Identities=12% Similarity=-0.015 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998864
No 465
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.45 E-value=0.0097 Score=55.19 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=29.7
Q ss_pred ccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 99 ~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|.=+.+.+|+..+|+|++|+|||||+..|+....
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 3447889999999999999999999998888654
No 466
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.44 E-value=0.0091 Score=46.95 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.-+.|.||+|+|||++++.|.....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 445588999999999999999987654
No 467
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.42 E-value=0.0088 Score=50.66 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=25.8
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++.-.+.|.||+|+||||++..|+..+.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 366666799999999999999999998875
No 468
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.37 E-value=0.0029 Score=52.71 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.|.+.
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999988753
No 469
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.37 E-value=0.011 Score=57.51 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=25.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.|.+|.|+|.+||||||+.+.|+..+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 4678999999999999999999998875
No 470
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.30 E-value=0.0083 Score=56.39 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=30.7
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.|+.+.--+.+|+++.|.|++|+|||||+..++....
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3455555588999999999999999999988887664
No 471
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.29 E-value=0.011 Score=56.77 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=26.7
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.|.++.|+|.+||||||+.+.|+..+.
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999997
No 472
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.27 E-value=0.012 Score=57.80 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|.+|.|+|.+||||||+.+.|+..+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999874
No 473
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.25 E-value=0.0055 Score=57.81 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.|+|+|.+|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999874
No 474
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.24 E-value=0.013 Score=52.72 Aligned_cols=27 Identities=41% Similarity=0.491 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++.-+.|.||.|+|||||++.++..+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 345678899999999999999999977
No 475
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.18 E-value=0.01 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+-.++|+|.+|+|||||++.|.|..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 45689999999999999999998854
No 476
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.17 E-value=0.0085 Score=48.57 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
+.-.++|+|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 556799999999999999998743
No 477
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.15 E-value=0.012 Score=51.47 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.-+.|.||+|+|||||++.|+..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 44577999999999999999999875
No 478
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.15 E-value=0.016 Score=55.56 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+..+|+|+|++|+|||||+..|+..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577999999999999999999997765
No 479
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.12 E-value=0.0086 Score=60.37 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=24.9
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+..|+.+.|+||+||||||++.++++...
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~ 134 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDE 134 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999998876654
No 480
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.10 E-value=0.016 Score=50.33 Aligned_cols=28 Identities=39% Similarity=0.539 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
....-+.|.||+|+|||||++.|+....
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4556788999999999999999998764
No 481
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.07 E-value=0.012 Score=53.46 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.-+.|.||+|+||||+.+.|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 345688999999999999999998775
No 482
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.06 E-value=0.014 Score=52.81 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=25.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+|..+.|.||+|+|||||++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999999886
No 483
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.06 E-value=0.011 Score=53.34 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=24.6
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-+.+|.++.|.||+|+|||||+..++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5678888999999999999999998764
No 484
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.01 E-value=0.015 Score=52.65 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+..+.|.||.|+|||||++.++..+.
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 355899999999999999999998774
No 485
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.00 E-value=0.012 Score=52.36 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+-.++|+|+.|+|||||++.+.+-
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998775
No 486
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.98 E-value=0.014 Score=48.73 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=23.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+|+|.|+.||||||+.+.|+..+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999998775
No 487
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.97 E-value=0.018 Score=55.40 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
...+|.++|.+||||||+.+.|+..+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999988775
No 488
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.96 E-value=0.021 Score=48.90 Aligned_cols=27 Identities=37% Similarity=0.527 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+.-++.++|..|+|||||+..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998765
No 489
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.96 E-value=0.0096 Score=49.73 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHH-HHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAE-VVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~-L~Gll~ 132 (287)
-.++|+|+.|+|||||++. +.|...
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~ 41 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFE 41 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 4689999999999999998 666543
No 490
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.95 E-value=0.014 Score=55.31 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=24.4
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..|-.++|+|+.|+|||||++.|+|...
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~ 249 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDR 249 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHB
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 3567799999999999999999999743
No 491
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.93 E-value=0.018 Score=54.44 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
...+|.++|.+||||||+.+.|+..+.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999998765
No 492
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.90 E-value=0.018 Score=51.37 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.-+.|.||.|+|||+|+++|+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67889999999999999999988653
No 493
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.89 E-value=0.018 Score=52.41 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
....-+.|.||+|+|||||++.|+..+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456788999999999999999998764
No 494
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.88 E-value=0.018 Score=47.99 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|+|=|+-||||||.++.|...+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 577889999999999999999886
No 495
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.88 E-value=0.0047 Score=50.96 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 446899999999999999888753
No 496
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.85 E-value=0.02 Score=51.26 Aligned_cols=27 Identities=44% Similarity=0.567 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+..-+.|.||+|+|||||++.|+..+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 445688999999999999999998765
No 497
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.83 E-value=0.024 Score=53.20 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+..+++++|++|+||||+.-.|+..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999998876
No 498
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.83 E-value=0.016 Score=53.31 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=24.9
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-+++|.++.|.|++|+|||||+..++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 36799999999999999999997776554
No 499
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.83 E-value=0.011 Score=54.85 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|.+++|||||++.|.|.-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999998754
No 500
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.82 E-value=0.0041 Score=55.70 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=25.2
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+..|.-+.|.||+|+|||||++.|+..+.
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 333466788999999999999999999775
Done!