Query 023107
Match_columns 287
No_of_seqs 192 out of 1670
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:29:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223 Aquaporin (major intri 100.0 1E-51 2.2E-56 358.1 21.2 228 43-284 3-231 (238)
2 PLN00184 aquaporin NIP1; Provi 100.0 3.1E-49 6.8E-54 354.6 23.9 223 47-281 50-275 (296)
3 KOG0224 Aquaporin (major intri 100.0 3.2E-51 6.8E-56 357.2 9.6 231 46-283 27-279 (316)
4 PTZ00016 aquaglyceroporin; Pro 100.0 2.4E-48 5.2E-53 349.8 22.8 228 47-282 46-293 (294)
5 COG0580 GlpF Glycerol uptake f 100.0 3.2E-48 7E-53 335.2 19.6 225 49-279 3-240 (241)
6 PF00230 MIP: Major intrinsic 100.0 7.9E-48 1.7E-52 336.9 19.4 224 44-274 1-227 (227)
7 PLN00182 putative aquaporin NI 100.0 2.2E-46 4.8E-51 334.2 25.6 217 47-279 38-254 (283)
8 PLN00167 aquaporin TIP5; Provi 100.0 4.9E-46 1.1E-50 328.7 24.1 228 46-285 17-246 (256)
9 PRK05420 aquaporin Z; Provisio 100.0 7.3E-46 1.6E-50 323.8 22.9 222 51-281 2-230 (231)
10 PLN00166 aquaporin TIP2; Provi 100.0 1.2E-45 2.5E-50 325.5 23.6 225 44-279 11-237 (250)
11 PLN00027 aquaporin TIP; Provis 100.0 1.4E-45 3E-50 326.1 22.6 224 45-280 14-240 (252)
12 PLN00026 aquaporin NIP; Provi 100.0 2.8E-45 6.1E-50 328.3 23.8 217 47-280 67-283 (298)
13 PLN00183 putative aquaporin NI 100.0 1.3E-43 2.9E-48 315.3 22.5 220 46-282 40-259 (274)
14 cd00333 MIP Major intrinsic pr 100.0 5.8E-43 1.3E-47 306.1 20.2 220 52-277 1-228 (228)
15 TIGR00861 MIP MIP family chann 100.0 3.5E-41 7.6E-46 292.6 18.8 214 56-274 1-216 (216)
16 PLN00026 aquaporin NIP; Provi 99.6 4.6E-16 1E-20 139.9 8.3 108 171-280 66-173 (298)
17 PLN00184 aquaporin NIP1; Provi 99.6 8.9E-16 1.9E-20 138.4 8.7 106 173-280 51-156 (296)
18 PLN00183 putative aquaporin NI 99.6 7.3E-15 1.6E-19 131.2 8.2 107 172-280 41-147 (274)
19 PLN00182 putative aquaporin NI 99.6 1.6E-14 3.4E-19 129.5 9.8 98 49-155 157-254 (283)
20 cd00333 MIP Major intrinsic pr 99.5 2.9E-14 6.2E-19 124.9 9.0 99 48-152 127-227 (228)
21 PLN00166 aquaporin TIP2; Provi 99.5 1.9E-14 4.1E-19 127.2 7.7 106 173-280 15-125 (250)
22 PLN00167 aquaporin TIP5; Provi 99.5 5.9E-14 1.3E-18 124.5 8.9 105 174-280 20-129 (256)
23 PRK05420 aquaporin Z; Provisio 99.5 1.2E-13 2.5E-18 121.0 8.7 102 177-280 3-105 (231)
24 PTZ00016 aquaglyceroporin; Pro 99.5 1.2E-13 2.6E-18 124.9 8.5 104 175-280 49-152 (294)
25 TIGR00861 MIP MIP family chann 99.4 2.5E-13 5.4E-18 118.0 8.4 95 49-149 120-215 (216)
26 PLN00027 aquaporin TIP; Provis 99.4 2.4E-13 5.1E-18 120.6 8.3 103 175-279 19-126 (252)
27 KOG0223 Aquaporin (major intri 99.3 1.7E-12 3.7E-17 113.2 4.6 99 49-157 130-228 (238)
28 COG0580 GlpF Glycerol uptake f 99.3 4.5E-12 9.7E-17 110.4 6.4 107 177-285 6-115 (241)
29 KOG0224 Aquaporin (major intri 99.3 5.6E-12 1.2E-16 111.3 6.4 102 175-278 31-133 (316)
30 PF00230 MIP: Major intrinsic 99.1 3E-11 6.6E-16 105.6 4.1 105 174-280 6-116 (227)
31 COG2116 FocA Formate/nitrite f 94.9 1.4 2.9E-05 39.4 14.2 186 87-284 64-263 (265)
32 PRK10805 formate transporter; 89.2 17 0.00037 33.0 15.0 104 90-197 71-183 (285)
33 PRK11562 nitrite transporter N 87.8 20 0.00044 32.2 13.8 182 90-285 61-256 (268)
34 TIGR00790 fnt formate/nitrite 87.6 19 0.00041 31.7 14.3 104 90-196 46-158 (239)
35 PF01226 Form_Nir_trans: Forma 83.4 16 0.00035 32.4 10.5 109 88-199 58-174 (250)
36 PF04632 FUSC: Fusaric acid re 70.0 1.2E+02 0.0027 30.3 14.8 36 122-157 379-414 (650)
37 PRK09713 focB putative formate 60.1 1.3E+02 0.0029 27.1 16.1 105 90-197 70-182 (282)
38 PRK12446 undecaprenyldiphospho 43.1 9.2 0.0002 35.5 0.4 23 103-125 5-27 (352)
39 PF03033 Glyco_transf_28: Glyc 37.2 8 0.00017 30.1 -0.8 22 105-126 4-25 (139)
40 KOG4647 Uncharacterized membra 29.9 1.5E+02 0.0032 25.9 5.5 33 37-69 81-113 (263)
41 COG0730 Predicted permeases [G 29.0 3.9E+02 0.0084 23.2 8.6 33 121-153 65-97 (258)
42 PF10841 DUF2644: Protein of u 26.5 1.1E+02 0.0025 20.8 3.4 34 137-190 16-50 (60)
43 PF08370 PDR_assoc: Plant PDR 26.5 69 0.0015 22.2 2.5 31 238-271 9-39 (65)
No 1
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-51 Score=358.14 Aligned_cols=228 Identities=51% Similarity=0.802 Sum_probs=203.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHH
Q 023107 43 GELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLL 122 (287)
Q Consensus 43 ~~~~~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~ 122 (287)
.+.++++.+|++++||++|++++|++|+++..... .....+.+.+++++|+.+++.+++++++||||+|||||++++
T Consensus 3 ~~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~---~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~ 79 (238)
T KOG0223|consen 3 GELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPK---YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFA 79 (238)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHH
Confidence 34567889999999999999999999998776543 123455788999999999999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHHHHHHHHHHH-hccccc
Q 023107 123 LARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKR 201 (287)
Q Consensus 123 l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~-~~~~~~ 201 (287)
+.|++++.+++.|+++|++|+++|+.+++.+.+.+ +.....+.+.+.++.+.+|+++.|++.||+|++++++ .+|+|+
T Consensus 80 ~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~ 158 (238)
T KOG0223|consen 80 VGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQ-YNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRR 158 (238)
T ss_pred HhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcc-cccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCC
Confidence 99999999999999999999999999999999875 3333444567788899999999999999999999999 777766
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhccC
Q 023107 202 NARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAI 281 (287)
Q Consensus 202 ~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~ 281 (287)
. .+.|+.||+++.+.+++.+++||++|||||+|||+++++ .|+++|+||+||++|+++++++|++++.++
T Consensus 159 ~-------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~ 228 (238)
T KOG0223|consen 159 S-------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAILAALIYRLVFIPD 228 (238)
T ss_pred c-------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence 4 478999999999999999999999999999999999985 599999999999999999999999999887
Q ss_pred CCc
Q 023107 282 PFK 284 (287)
Q Consensus 282 ~~~ 284 (287)
+.|
T Consensus 229 ~~~ 231 (238)
T KOG0223|consen 229 ESE 231 (238)
T ss_pred ccc
Confidence 444
No 2
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=3.1e-49 Score=354.60 Aligned_cols=223 Identities=28% Similarity=0.418 Sum_probs=185.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcC
Q 023107 47 SWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARK 126 (287)
Q Consensus 47 ~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~ 126 (287)
+.+++|++++||+|||+|+|++++++...... ....+++.++++||+++++.+++++++||||+|||||+++++.|+
T Consensus 50 ~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~---~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~ 126 (296)
T PLN00184 50 SVPFLQKLIAEVLGTYFLVFTGCASVVVNMQN---DNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGR 126 (296)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCC
Confidence 45789999999999999999999876543221 112356678899999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCC---CcccccCCCCCCCchhHHHHHHHHHHHHHHHhccccccC
Q 023107 127 LSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGG---GANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNA 203 (287)
Q Consensus 127 ~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~~ 203 (287)
++|.++++||++|++|+++|+++++.+++.. ...... ......+..+.+++++.|+++|++|+++++++.++++..
T Consensus 127 ~~~~~~~~YiiaQllGA~lga~~~~~l~~~~-~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~~ 205 (296)
T PLN00184 127 FPLKQVPAYVISQVIGSTLAAATLRLLFGLD-HDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNRAI 205 (296)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcch-hhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCcCC
Confidence 9999999999999999999999999988643 111111 011223334778899999999999999999876544321
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhccC
Q 023107 204 RDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAI 281 (287)
Q Consensus 204 ~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~ 281 (287)
..+.|+.||+++.+.+++.+++||++|||||||||+++.+ .|+++||||+||++|+++++++|++++..+
T Consensus 206 -----~~~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~---~~~~~WVy~vgPilGa~laal~y~~l~~~~ 275 (296)
T PLN00184 206 -----GELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYG---CYKGIWIYIVAPTLGAIAGAWVYNTVRYTD 275 (296)
T ss_pred -----CcchHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhh---cccccchHHhHHHHHHHHHHHHHHHHhcCC
Confidence 1467999999999999999999999999999999999874 688999999999999999999999997643
No 3
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-51 Score=357.23 Aligned_cols=231 Identities=29% Similarity=0.408 Sum_probs=199.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhc
Q 023107 46 KSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLAR 125 (287)
Q Consensus 46 ~~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g 125 (287)
.+.++.|++++||+||++|++++++++.+...+.. ...++..+.++||+++++.+|+.+++||||+|||||+++++.|
T Consensus 27 i~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g--~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g 104 (316)
T KOG0224|consen 27 IRNELLREFLAEFLGTFVLVVFGLGSVAQAVLSGG--TGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILG 104 (316)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhccceeEEEEeccC--CCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhc
Confidence 34578999999999999999999999888877643 2345667789999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCC--------------cccccCCCCCCCchhHHHHHHHHHHH
Q 023107 126 KLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGG--------------ANVVAHGYTKGDGLGAEIIGTFVLVY 191 (287)
Q Consensus 126 ~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~s~~~~~~~E~~~T~~l~~ 191 (287)
|++|+|+++|+++|++||++|++.+|.+|.+. +...+++ ++-+.|+.+.+++|+.|+++|.+|+.
T Consensus 105 ~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~-i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L~~ 183 (316)
T KOG0224|consen 105 RLPWKKFPVYVLAQFIGAFLGAATVYGLYYDA-INEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAMLVL 183 (316)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999887 3333332 12346778999999999999999999
Q ss_pred HHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHh-----CCCCCC---Ccceehhhhh
Q 023107 192 TVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIF-----NKDHAW---DDHWIFWVGP 263 (287)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~-----~~~~~~---~~~wvy~v~p 263 (287)
++++++|++|... ..+.|+.+|+.+.++..+.+.++|..+|||||||||+++ +.+..+ .+.|++|++|
T Consensus 184 ~l~aI~D~rN~~p----~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvPivgP 259 (316)
T KOG0224|consen 184 CLFAITDKRNPIP----TGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVPIVGP 259 (316)
T ss_pred heeEEecCCCCCC----cchhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHHHHHhcchhhcccCCceeeeeehhh
Confidence 9999999998433 368999999999999999999999999999999999983 222222 4578999999
Q ss_pred HHHHHHHHHHHHHHhccCCC
Q 023107 264 FIGAALAAVYHQIVIRAIPF 283 (287)
Q Consensus 264 ~~Ga~~a~~~~~~~~~~~~~ 283 (287)
++|+++++++|++++..+..
T Consensus 260 l~Gai~G~~iY~~~Ig~h~~ 279 (316)
T KOG0224|consen 260 LIGAILGGWIYDFFIGFHIP 279 (316)
T ss_pred hhhhhhhhhhheeeeeccCC
Confidence 99999999999999776544
No 4
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=2.4e-48 Score=349.81 Aligned_cols=228 Identities=27% Similarity=0.371 Sum_probs=189.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcC
Q 023107 47 SWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARK 126 (287)
Q Consensus 47 ~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~ 126 (287)
.++++|++++||+|||+|+|+++++........ ...+.+.+++++|+++++.+++++++||||+|||||+++++.|+
T Consensus 46 ~~~~~~~~laEfigT~llvf~g~g~~~~~~~~~---~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~ 122 (294)
T PTZ00016 46 YRPNVREYVAEFLGTFVLLFFGEGVVATTHTVG---NNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGK 122 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC---CCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhcc
Confidence 367889999999999999999998766433211 12345678899999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCC-------------CcccccCCCCCCCchhHHHHHHHHHHHHH
Q 023107 127 LSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGG-------------GANVVAHGYTKGDGLGAEIIGTFVLVYTV 193 (287)
Q Consensus 127 ~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~s~~~~~~~E~~~T~~l~~~v 193 (287)
++|.+++.|+++|++|+++|++++|.++++. ++..+. +...+.++.+..++++.|+++|++|++++
T Consensus 123 i~~~~~~~YiiaQ~lGa~~ga~ll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~t~p~~s~~~a~~~E~i~T~iLv~~i 201 (294)
T PTZ00016 123 FPWKKLPGYFVAQLLGAFVGAACVYGLYYGF-FKDHGIPELPWETMANGFAGVFATYPREGNFYAIFSELILTAILLLVI 201 (294)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHhhcCcccccccccccccceeeCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998764 222111 11223445677889999999999999999
Q ss_pred HHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhC---CCCCCC----cceehhhhhHHH
Q 023107 194 FSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFN---KDHAWD----DHWIFWVGPFIG 266 (287)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~---~~~~~~----~~wvy~v~p~~G 266 (287)
+.++|+++.... ...|+.+|+.+.++.++.++.||++|||||||||+++.. +...|+ ++||||+||++|
T Consensus 202 la~~d~~~~~~~----~~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vgP~vG 277 (294)
T PTZ00016 202 LAITDPNNCPAF----NYLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVAPFVG 277 (294)
T ss_pred HHhccCccCCCc----CcccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeeehHHHHH
Confidence 999987664321 357999999999999999999999999999999999862 222443 689999999999
Q ss_pred HHHHHHHHHHHhccCC
Q 023107 267 AALAAVYHQIVIRAIP 282 (287)
Q Consensus 267 a~~a~~~~~~~~~~~~ 282 (287)
+++|+++|++++.++.
T Consensus 278 a~~aally~~ll~~~~ 293 (294)
T PTZ00016 278 AVLGMFLYDKFIPPLI 293 (294)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999999999987653
No 5
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-48 Score=335.24 Aligned_cols=225 Identities=34% Similarity=0.528 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcCCC
Q 023107 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLS 128 (287)
Q Consensus 49 ~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~ 128 (287)
+..|++++||+|||+|++++++++....+...+....++..++++||+.+++.+|+++++||||+|||||+++++.|+++
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp 82 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFP 82 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCC
Confidence 45678899999999999999999888776655555667778999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcC------CCcccccCC-CCCCCchhHHHHHHHHHHHHHHHhccccc
Q 023107 129 LTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLG------GGANVVAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKR 201 (287)
Q Consensus 129 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~------~~~~~~~~~-~s~~~~~~~E~~~T~~l~~~v~~~~~~~~ 201 (287)
|++++.||++|++||++|+.+++.+++.+ +...+ .+..++.|. .+..++++.|+++|++|+++++++.++++
T Consensus 83 ~~~v~~YivAQ~lGA~~ga~l~~~~~~~~-~~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~~~~ 161 (241)
T COG0580 83 WRKVLPYIVAQVLGAFAGAALLYLLYYGK-ILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGN 161 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 99999999999999999999999999877 33322 223334443 36678899999999999999999887444
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHh---C---CCCCCCcceehhhhhHHHHHHHHHHHH
Q 023107 202 NARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIF---N---KDHAWDDHWIFWVGPFIGAALAAVYHQ 275 (287)
Q Consensus 202 ~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~---~---~~~~~~~~wvy~v~p~~Ga~~a~~~~~ 275 (287)
. + ..+.|+.+|+.+..+.++.++.||.++|||||+|||+.. + ...++.|.|+||++|++|+++++++|+
T Consensus 162 ~-~----~~~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~ 236 (241)
T COG0580 162 A-N----AGFAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYK 236 (241)
T ss_pred c-c----ccchHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHHHHHHH
Confidence 3 1 147899999999999999999999999999999999953 2 111226899999999999999999999
Q ss_pred HHhc
Q 023107 276 IVIR 279 (287)
Q Consensus 276 ~~~~ 279 (287)
.++.
T Consensus 237 ~~~~ 240 (241)
T COG0580 237 LLLG 240 (241)
T ss_pred HHcc
Confidence 8765
No 6
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=7.9e-48 Score=336.88 Aligned_cols=224 Identities=40% Similarity=0.613 Sum_probs=192.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC---CCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHH
Q 023107 44 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTK---CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG 120 (287)
Q Consensus 44 ~~~~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla 120 (287)
|.++++++|++++||+||++++|+++++.........+ ....+...+++++|+.+++.+++++++||||+|||||++
T Consensus 1 ~~~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla 80 (227)
T PF00230_consen 1 ELKSPSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLA 80 (227)
T ss_dssp GCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhh
Confidence 46788999999999999999999999876644333221 223456788999999999999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhcccc
Q 023107 121 LLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAK 200 (287)
Q Consensus 121 ~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~ 200 (287)
.++.|+++|.+++.|+++|++|+++|+++++.++++. ........+.+.++.+..++++.|+++|++|+++++...|++
T Consensus 81 ~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~~~ 159 (227)
T PF00230_consen 81 FALTGRISWKKAIVYIIAQFLGAFLGALLVYALYPDS-NSAAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAVADDK 159 (227)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHH-HTCTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred eeeeeeecccceeeEEeeccccccccccchhhcccCc-ccccccccccccccchhhhhhhhhhhhhhHHHhhhhhhcccc
Confidence 9999999999999999999999999999999998875 222333445667788889999999999999999999999888
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHH
Q 023107 201 RNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYH 274 (287)
Q Consensus 201 ~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~ 274 (287)
++... ..+.|+.+|+.+.+..+..++.||++|||||+|+|+++.+ .|+++|+||++|++|+++|+++|
T Consensus 160 ~~~~~---~~~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~---~~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 160 RKFPL---GPLAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSG---IWDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp SSSTS---SGGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHT---HHTTTTHHHHHHHHHHHHHHHHH
T ss_pred ccccc---ccccceeEEEEEeecccccccccccccCchhhcCceeecc---cCCeEEEEEehHHHHHHHHHhhC
Confidence 76542 2468999999999999999999999999999999999985 49999999999999999999987
No 7
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=2.2e-46 Score=334.20 Aligned_cols=217 Identities=25% Similarity=0.433 Sum_probs=183.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcC
Q 023107 47 SWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARK 126 (287)
Q Consensus 47 ~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~ 126 (287)
.++++|++++||+|||+|+|++++++....... ...+.+.+++++|+++++.+++++++||||+|||||++.++.|+
T Consensus 38 ~~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~---~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~ 114 (283)
T PLN00182 38 IVCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYG---GTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRR 114 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC---CCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcC
Confidence 457889999999999999999998766433211 12346678889999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhccccccCCCC
Q 023107 127 LSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDS 206 (287)
Q Consensus 127 ~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~ 206 (287)
++|.+++.|+++|++|+++|+++++.+++.. . .+.....+..+.+++++.|+++|++|+++++...++++..
T Consensus 115 ~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~~~-~----~~~~~~~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~~--- 186 (283)
T PLN00182 115 FPWYQVPLYIGAQLTGSLLASLTLRLMFNVT-P----EAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSRAV--- 186 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c----cceeeCCCCcchHHHHHHHHHHHHHHHHHHHhheeccccC---
Confidence 9999999999999999999999999988532 1 1122233445778999999999999999999875443321
Q ss_pred CCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhc
Q 023107 207 HVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIR 279 (287)
Q Consensus 207 ~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~ 279 (287)
....++.+|+++.+.+++.+++||+++||||+|||+++.+ .|.++|+||++|++|+++|+++|++++.
T Consensus 187 --~~~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~---~~~~~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 187 --GELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMG---RYKGIWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred --CcchhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhc---cccceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 1357999999999999999999999999999999999863 6899999999999999999999999974
No 8
>PLN00167 aquaporin TIP5; Provisional
Probab=100.00 E-value=4.9e-46 Score=328.69 Aligned_cols=228 Identities=30% Similarity=0.464 Sum_probs=190.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhcccc--CCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHH
Q 023107 46 KSWSFYRAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLL 123 (287)
Q Consensus 46 ~~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l 123 (287)
..++++|++++||+|||+|+|+++++...... .+.+....+++.+++++|+++++.+++++++||+|+|||||++.++
T Consensus 17 ~~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~ 96 (256)
T PLN00167 17 VTRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAV 96 (256)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHH
Confidence 45678999999999999999999988764321 1111122346778999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhccccccC
Q 023107 124 ARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNA 203 (287)
Q Consensus 124 ~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~~ 203 (287)
.|+++|.+++.|+++|++|+++|+.+++.+++..... .....++.+.+++++.|+++|++|+++++...|+++..
T Consensus 97 ~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~~~~~~ 171 (256)
T PLN00167 97 GGHISVPTAMFYWISQMLASVMACLFLKVTTVGQHVP-----TYKIAEEMTGFGASVLEGVLTFGLVYTVYAAGDPRRGL 171 (256)
T ss_pred hCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhcccccc-----ccccCcccchHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 9999999999999999999999999998886543111 11223345667889999999999999999988876532
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhccCCC
Q 023107 204 RDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPF 283 (287)
Q Consensus 204 ~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~~~ 283 (287)
. +...|+.+|+.+..+.++.+++||++|||||||||+++++ .|+++|+||+||++|+++++++|++++.++..
T Consensus 172 ~----~~~~pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~---~~~~~wvywvgP~~Ga~l~a~~y~~l~~~~~~ 244 (256)
T PLN00167 172 L----GAIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAG---SFKNQAVYWVGPLLGGAVAGLLYDNVVFPTQD 244 (256)
T ss_pred C----CCcchHHHHHHHHHHHHhccCCCCcccCcccchHHHHhcc---CccCcEEEeHHHHHHHHHHHHHHHHHhCCCcC
Confidence 1 2467999999999999999999999999999999999864 68899999999999999999999999877655
Q ss_pred cC
Q 023107 284 KS 285 (287)
Q Consensus 284 ~~ 285 (287)
+.
T Consensus 245 ~~ 246 (256)
T PLN00167 245 DR 246 (256)
T ss_pred CC
Confidence 43
No 9
>PRK05420 aquaporin Z; Provisional
Probab=100.00 E-value=7.3e-46 Score=323.84 Aligned_cols=222 Identities=30% Similarity=0.562 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcCCCch
Q 023107 51 YRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLT 130 (287)
Q Consensus 51 ~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~ 130 (287)
+|++++||+|||+|+|++++++....... ....+.+.+++++|+++++.+++++++||+|+|||||+++++.|+++|.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~--~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~ 79 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFP--ELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAK 79 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccC--CCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHH
Confidence 68999999999999999998764322211 1123456689999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhHhHhHhhHHHHhhcCCcc-hhhcCC-----Cccc-ccCCCCCCCchhHHHHHHHHHHHHHHHhccccccC
Q 023107 131 RAVFYMVMQCLGAVCGAGVVKGFEGSKN-YERLGG-----GANV-VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNA 203 (287)
Q Consensus 131 ~~~~yi~aQ~lGa~~g~~~~~~~~~~~~-~~~~~~-----~~~~-~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~~ 203 (287)
+++.|+++|++|+++|+.+++.+++... +...+. +... .....+..++++.|+++|++|+++++...|+++.
T Consensus 80 ~~~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~~- 158 (231)
T PRK05420 80 ELVPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGATDKRAP- 158 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCC-
Confidence 9999999999999999999998876531 111110 0001 1123466789999999999999999999886542
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhccC
Q 023107 204 RDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAI 281 (287)
Q Consensus 204 ~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~ 281 (287)
....|+.+|+.+....++.+++||++|||||||||+++.+ +..|+++|+||++|++|+++++++|+++++.+
T Consensus 159 -----~~~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g-~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~ 230 (231)
T PRK05420 159 -----AGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVG-GWALEQLWLFWVAPIVGAIIGGLIYRLLLEKD 230 (231)
T ss_pred -----CcchHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhC-CCCccceEEeehHHHHHHHHHHHHHHHHhccC
Confidence 1367999999999999999999999999999999999974 33457899999999999999999999997654
No 10
>PLN00166 aquaporin TIP2; Provisional
Probab=100.00 E-value=1.2e-45 Score=325.51 Aligned_cols=225 Identities=33% Similarity=0.556 Sum_probs=186.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccCCC-CCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHH
Q 023107 44 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGV-SKSNT-KCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGL 121 (287)
Q Consensus 44 ~~~~~~l~r~~~aEf~gTf~lv~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~ 121 (287)
|.++++.+|++++||+|||+|+|+++++.... ...+. .....+.+.+++++|+.+++.+++++++||+|+|||+|++.
T Consensus 11 ~~~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~ 90 (250)
T PLN00166 11 DSFSVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGL 90 (250)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHH
Confidence 34457789999999999999999999876642 11111 11123456788999999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhccccc
Q 023107 122 LLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 201 (287)
Q Consensus 122 ~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~ 201 (287)
++.|+++|.++++|+++|++|+++|+.+.+.+++.+.. ......++.+..++++.|+++|++|+++++...++++
T Consensus 91 ~l~g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~ 165 (250)
T PLN00166 91 AIGGNITIITGFFYWIAQCLGSIVACLLLVFVTNGESV-----PTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPK 165 (250)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----cccccCCCCcHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999988764311 1112344567789999999999999999998766544
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhc
Q 023107 202 NARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIR 279 (287)
Q Consensus 202 ~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~ 279 (287)
+... ..+.|+.+|+.+...+++.+++||++|||||||||+++.+ .|+++|+||++|++|+++++++|+.++.
T Consensus 166 ~~~~---~~~~p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~---~~~~~wvywvgPi~Ga~~aa~~y~~l~~ 237 (250)
T PLN00166 166 KGSL---GTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG---DFSQIWIYWVGPLVGGALAGLIYGDVFI 237 (250)
T ss_pred cccc---ccchhHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcC---CCcccchhhHHHHHHHHHHHHHHHHHhc
Confidence 3211 2468999999999999999999999999999999999874 6999999999999999999999988744
No 11
>PLN00027 aquaporin TIP; Provisional
Probab=100.00 E-value=1.4e-45 Score=326.06 Aligned_cols=224 Identities=33% Similarity=0.570 Sum_probs=186.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhhcccc-C-CCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHH
Q 023107 45 LKSWSFYRAGIAEFMATFLFLYITVLTVMGVSK-S-NTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLL 122 (287)
Q Consensus 45 ~~~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~ 122 (287)
...+..+|++++||+|||+|+|+++++.+.... . ..+....+.+.+++++|+.+++.+++++++||+|+|||+|++.+
T Consensus 14 ~~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~ 93 (252)
T PLN00027 14 ASHPDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAF 93 (252)
T ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHH
Confidence 334678999999999999999999987653211 1 11111234567899999999999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhc-cccc
Q 023107 123 LARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT-DAKR 201 (287)
Q Consensus 123 l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~-~~~~ 201 (287)
+.|+++|.+.+.|+++|++|+++|+.+++.+.++.. .+.....++.+.+++++.|+++|++|+++++... |+++
T Consensus 94 ~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~ 168 (252)
T PLN00027 94 IGGNITLLRGILYWIAQLLGSVVACLLLKFSTGGLE-----TSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKK 168 (252)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----cccccCCCCccHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999987765431 1223345567888999999999999999999864 4443
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 202 NARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 202 ~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
... ..+.|+.+|+.+..++++.+++||++|||||||||+++.+ .|+++|+||+||++|+++++++|++++.+
T Consensus 169 ~~~----~~~~p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~---~~~~~wvy~vgP~~Ga~laa~~y~~l~~~ 240 (252)
T PLN00027 169 GDL----GIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW---TWTNHWVYWAGPLIGGGIAGLVYELIFIG 240 (252)
T ss_pred CCc----cchHHHHHHHHHHHHHHhcccccccccCcchhHHHHHHhh---cchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 211 2478999999999999999999999999999999999874 69999999999999999999999999764
No 12
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=2.8e-45 Score=328.33 Aligned_cols=217 Identities=27% Similarity=0.404 Sum_probs=182.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcC
Q 023107 47 SWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARK 126 (287)
Q Consensus 47 ~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~ 126 (287)
..+++|++++||+|||+|+|+++++........ ...+++.+++++|+++++.+++++++||||+|||||+++++.++
T Consensus 67 ~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~---~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~ 143 (298)
T PLN00026 67 DVSLTRKLGAEFVGTFILIFAATAGPIVNQKYD---GAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRH 143 (298)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCC
Confidence 446789999999999999999987544221111 11346667899999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhccccccCCCC
Q 023107 127 LSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDS 206 (287)
Q Consensus 127 ~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~ 206 (287)
++|.++++||++|++|+++|+++++.++++. . ..+. ..++.+.+++++.|+++|++|+++++...++++..
T Consensus 144 ~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~-~---~~g~--t~p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~~~--- 214 (298)
T PLN00026 144 FPWKHVPAYIAAQVSASICASFALKGVFHPF-M---SGGV--TVPSVSTGQAFALEFIITFNLLFVVTAVATDTRAV--- 214 (298)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c---cCce--eeecccHHHHHHHHHHHHHHHHHhheeeecCCCCc---
Confidence 9999999999999999999999999998753 1 1122 23456788999999999999999999764433321
Q ss_pred CCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 207 HVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 207 ~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
....++.+|+.+.+.+++.+++||++|||||||+|+++.+ .|+++|+||++|++|+++++++|+++..+
T Consensus 215 --~~~~~l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~---~~~~~wVy~vaPilGAilga~ly~~~~~~ 283 (298)
T PLN00026 215 --GELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAG---NYRAIWIYLVAPTLGALAGAGTYTAVKLR 283 (298)
T ss_pred --CCccchHHHHHHHHHHHHhcccCccccChHHHHHHHHhcC---CchheeHHHHHHHHHHHHHHHHHHHHhCc
Confidence 1356899999999999999999999999999999999863 79999999999999999999999998444
No 13
>PLN00183 putative aquaporin NIP7; Provisional
Probab=100.00 E-value=1.3e-43 Score=315.29 Aligned_cols=220 Identities=26% Similarity=0.399 Sum_probs=184.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhc
Q 023107 46 KSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLAR 125 (287)
Q Consensus 46 ~~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g 125 (287)
.+.+.+|++++||++||+++|++++++....... ...+.+.+++++|+.+++.+++++++||||+|||+|+++++.+
T Consensus 40 ~~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~---~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l~g 116 (274)
T PLN00183 40 MDLNPARMVLAEMVGTFILMFCVCGIIASTQLSG---GEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFATFG 116 (274)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhccccC---CccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhc
Confidence 3456789999999999999999988765433211 1234566888999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhccccccCCC
Q 023107 126 KLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARD 205 (287)
Q Consensus 126 ~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~ 205 (287)
+++|.++++||++|++|+++|+.+++.+++... ......+..+.+++++.|+++|++|+++++...++++..
T Consensus 117 ~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~------~~~~~~p~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~~~-- 188 (274)
T PLN00183 117 HFPWSKVPLYITAQTVGSVLATYVGVSVYGVKA------DLMTTKPAQGCSSAFWVEFIATFIVMFLAASLTSQPQSL-- 188 (274)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------ccccCCCcccHHHHHHHHHHHHHHHHHhhheeeccccCC--
Confidence 999999999999999999999999888876531 111222334567899999999999999999887765321
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhccCC
Q 023107 206 SHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIP 282 (287)
Q Consensus 206 ~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~~ 282 (287)
....++.+|+.+.+.+++.+++||++|||||+|+|+++. ..|+++|+||++|++|+++++++|++++.+..
T Consensus 189 ---~~~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~---~~~~~~wvy~vapilGailaa~l~~~l~~~~~ 259 (274)
T PLN00183 189 ---GHLSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVS---WDFKDIWIYITAPTIGAVAGALMFHLLRLRTQ 259 (274)
T ss_pred ---CCceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhC---CChhheehHHHHHHHHHHHHHHHHHHHhccCC
Confidence 135689999999999999999999999999999999985 47999999999999999999999999977643
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=100.00 E-value=5.8e-43 Score=306.12 Aligned_cols=220 Identities=40% Similarity=0.681 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcCCCchh
Q 023107 52 RAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTR 131 (287)
Q Consensus 52 r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~ 131 (287)
|++++||+|||+++|+++++........+ ...+.+.+++++|+.+++.+++++++||+|+|||+|++.++.|+++|.+
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~--~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~ 78 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGG--ASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPLIR 78 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCC--CCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCHHH
Confidence 57899999999999999988765443221 1234566889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCc--------ccccCCCCCCCchhHHHHHHHHHHHHHHHhccccccC
Q 023107 132 AVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGA--------NVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNA 203 (287)
Q Consensus 132 ~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~~ 203 (287)
.+.|+++|++|+++|+.+.+.+++++ +....... +.+.++.+.+++++.|+++|++|+++++...++++..
T Consensus 79 ~~~y~~aq~~Ga~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~~ 157 (228)
T cd00333 79 VIPYIIAQLLGAILGAALLYGLYYGL-YLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNGP 157 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH-HhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHHccccccC
Confidence 99999999999999999999998776 22221111 2344566788999999999999999999988765431
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHH
Q 023107 204 RDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIV 277 (287)
Q Consensus 204 ~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~ 277 (287)
.. ....|+.+|+.+.+.++++++.||+++|||||++++++.+....|+++|+||++|++|+++++++|+++
T Consensus 158 ~~---~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 158 PP---GGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred CC---CCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence 11 246799999999999999999999999999999999987522269999999999999999999999874
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=100.00 E-value=3.5e-41 Score=292.60 Aligned_cols=214 Identities=42% Similarity=0.731 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHHHHhhccccCC-CCCC-ccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcCCCchhHH
Q 023107 56 AEFMATFLFLYITVLTVMGVSKSN-TKCS-TVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAV 133 (287)
Q Consensus 56 aEf~gTf~lv~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~ 133 (287)
+||+|||+|+|+++++........ .+.. ..+...+++++|+.+++.+++++++||+|+|||+|++.++.++++|.+.+
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 599999999999998876533321 0111 11456789999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCCCCchhH
Q 023107 134 FYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAP 213 (287)
Q Consensus 134 ~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~~~~~~~~ 213 (287)
.|+++|++|+++|+.+++.++++. +...........++.+.+++++.|+++|++|+++++...+++++... ....|
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~---~~~~~ 156 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSGL-FPGNLAVNGSGAAGVSSGQAFFVEFIGTAILVLVIFATTDPRNRVPR---GGFAP 156 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc-ccCCccccCCCCCcccHHHHHHHHHHHHHHHHHHHheeecCCCCCCC---CccHH
Confidence 999999999999999999988765 21111111122345677899999999999999999998776543222 13689
Q ss_pred HHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHH
Q 023107 214 LPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYH 274 (287)
Q Consensus 214 ~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~ 274 (287)
+.+|+.+...+++.+++||+++||||+++++++.+ ...|+++|+||++|++|+++++++|
T Consensus 157 ~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~-~~~~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 157 LAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAG-LAGWGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred HHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhc-cccccceeHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999863 3579999999999999999999875
No 16
>PLN00026 aquaporin NIP; Provisional
Probab=99.64 E-value=4.6e-16 Score=139.95 Aligned_cols=108 Identities=21% Similarity=0.307 Sum_probs=86.3
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCC
Q 023107 171 HGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKD 250 (287)
Q Consensus 171 ~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~ 250 (287)
++.+.++.++.||++|++|++++++....+............++.+|+++.+.+++++.+||++|||||++++++.. +
T Consensus 66 ~~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g--~ 143 (298)
T PLN00026 66 PDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALR--H 143 (298)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhC--C
Confidence 34566789999999999999999864222111111111123468999999999999999999999999999999963 4
Q ss_pred CCCCcceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 251 HAWDDHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 251 ~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
..|.+.|+||++|++|+++|+++++.++.+
T Consensus 144 ~~~~~~~~YiiaQilGAi~aa~~~~~~~~~ 173 (298)
T PLN00026 144 FPWKHVPAYIAAQVSASICASFALKGVFHP 173 (298)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 689999999999999999999999998865
No 17
>PLN00184 aquaporin NIP1; Provisional
Probab=99.63 E-value=8.9e-16 Score=138.36 Aligned_cols=106 Identities=20% Similarity=0.220 Sum_probs=84.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCC
Q 023107 173 YTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHA 252 (287)
Q Consensus 173 ~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~ 252 (287)
.+..+.++.|+++|++|++++++....+............++.+|+++.+.+++++.+||+++||||++++.+.. +..
T Consensus 51 ~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g--~~~ 128 (296)
T PLN00184 51 VPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCG--RFP 128 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhC--CCC
Confidence 345678999999999999999876432221111111123466779999999999999999999999999999963 468
Q ss_pred CCcceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 253 WDDHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 253 ~~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
|.+.|+||++|++|+++|+++++.++..
T Consensus 129 ~~~~~~YiiaQllGA~lga~~~~~l~~~ 156 (296)
T PLN00184 129 LKQVPAYVISQVIGSTLAAATLRLLFGL 156 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999988753
No 18
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.56 E-value=7.3e-15 Score=131.17 Aligned_cols=107 Identities=19% Similarity=0.283 Sum_probs=87.0
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCC
Q 023107 172 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDH 251 (287)
Q Consensus 172 ~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~ 251 (287)
+.+.++.++.|+++|++++++.++..+.++....+......++.+|+++.+.+++++.+||+++||||++++++.. ..
T Consensus 41 ~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l~g--~i 118 (274)
T PLN00183 41 DLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFATFG--HF 118 (274)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhc--CC
Confidence 3456689999999999999999987655433211111122577899999999999999999999999999999973 35
Q ss_pred CCCcceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 252 AWDDHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 252 ~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
.|.+.|+||++|++|+++|+.+++.++..
T Consensus 119 ~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~ 147 (274)
T PLN00183 119 PWSKVPLYITAQTVGSVLATYVGVSVYGV 147 (274)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999888754
No 19
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.56 E-value=1.6e-14 Score=129.54 Aligned_cols=98 Identities=22% Similarity=0.258 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcCCC
Q 023107 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLS 128 (287)
Q Consensus 49 ~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~ 128 (287)
+.++.+++|+++||+|+++++++....+ . ... ..++++|+.+++.+++.+++||+|+|||+|++.++.++ .
T Consensus 157 s~~~a~~~E~l~TfiLv~~i~~~~~~~~---~---~~~--~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~-~ 227 (283)
T PLN00182 157 SSGQALVAEIIISFLLMFVISGVATDSR---A---VGE--LAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMG-R 227 (283)
T ss_pred chHHHHHHHHHHHHHHHHHHHhheeccc---c---CCc--chhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhc-c
Confidence 4578999999999999998876433211 1 111 15688999999999999999999999999999999865 5
Q ss_pred chhHHHHHHHhhHhHhHhhHHHHhhcC
Q 023107 129 LTRAVFYMVMQCLGAVCGAGVVKGFEG 155 (287)
Q Consensus 129 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~ 155 (287)
|.+.|+||++|++|+++|+++.+.+..
T Consensus 228 ~~~~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 228 YKGIWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred ccceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999888763
No 20
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.53 E-value=2.9e-14 Score=124.88 Aligned_cols=99 Identities=25% Similarity=0.234 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcCC
Q 023107 48 WSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKL 127 (287)
Q Consensus 48 ~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~ 127 (287)
.+.+|.++.|+++|++|+++++........ .......++.+|+.+....++.+++||+|+|||++++..+.++.
T Consensus 127 ~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~------~~~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~ 200 (228)
T cd00333 127 VSNGNAFFVEFIGTFILVLVVFATTDDPNG------PPPGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGL 200 (228)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcccccc------CCCCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhcc
Confidence 457899999999999999998775432111 01122367888999999999999999999999999999999998
Q ss_pred --CchhHHHHHHHhhHhHhHhhHHHHh
Q 023107 128 --SLTRAVFYMVMQCLGAVCGAGVVKG 152 (287)
Q Consensus 128 --~~~~~~~yi~aQ~lGa~~g~~~~~~ 152 (287)
+|.+.++||++|++|+++|+++.+.
T Consensus 201 ~~~~~~~~vy~vap~lGai~aa~l~~~ 227 (228)
T cd00333 201 ARHWHYFWVYWVGPLIGAIAGALVYDY 227 (228)
T ss_pred ccccceeehhhhHHHHHHHHHHHHHHh
Confidence 7999999999999999999887543
No 21
>PLN00166 aquaporin TIP2; Provisional
Probab=99.53 E-value=1.9e-14 Score=127.20 Aligned_cols=106 Identities=21% Similarity=0.310 Sum_probs=85.4
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhcccc--ccCC---CCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHh
Q 023107 173 YTKGDGLGAEIIGTFVLVYTVFSATDAK--RNAR---DSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIF 247 (287)
Q Consensus 173 ~s~~~~~~~E~~~T~~l~~~v~~~~~~~--~~~~---~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~ 247 (287)
.+.++.++.|+++|++|+++.++..... .... ........++.+|+.+.+.+++++.+||+++||||++++.+.
T Consensus 15 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~- 93 (250)
T PLN00166 15 VASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIG- 93 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHh-
Confidence 3456789999999999999999865431 1110 011123468889999999999999999999999999999995
Q ss_pred CCCCCCCcceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 248 NKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 248 ~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
++..|.+.|+||++|++|+++|+.+++.++..
T Consensus 94 -g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~ 125 (250)
T PLN00166 94 -GNITIITGFFYWIAQCLGSIVACLLLVFVTNG 125 (250)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34578999999999999999999999988754
No 22
>PLN00167 aquaporin TIP5; Provisional
Probab=99.50 E-value=5.9e-14 Score=124.45 Aligned_cols=105 Identities=18% Similarity=0.355 Sum_probs=85.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcccccc--CC---CCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhC
Q 023107 174 TKGDGLGAEIIGTFVLVYTVFSATDAKRN--AR---DSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFN 248 (287)
Q Consensus 174 s~~~~~~~E~~~T~~l~~~v~~~~~~~~~--~~---~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~ 248 (287)
+.++.++.||++|++|+++.++....++. .+ ........++.+|+++.+.+++++.+||+++|||+++++.+.
T Consensus 20 ~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~~-- 97 (256)
T PLN00167 20 NALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAVG-- 97 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHHh--
Confidence 45578999999999999999887553321 10 011124579999999999999999999999999999999996
Q ss_pred CCCCCCcceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 249 KDHAWDDHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 249 ~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
++..|.+.|+||++|++|+++|+.+++.++..
T Consensus 98 g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 129 (256)
T PLN00167 98 GHISVPTAMFYWISQMLASVMACLFLKVTTVG 129 (256)
T ss_pred CCCcHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34679999999999999999999998887543
No 23
>PRK05420 aquaporin Z; Provisional
Probab=99.48 E-value=1.2e-13 Score=120.98 Aligned_cols=102 Identities=22% Similarity=0.224 Sum_probs=80.5
Q ss_pred CchhHHHHHHHHHHHHHHHhccccccCCCCC-CCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCc
Q 023107 177 DGLGAEIIGTFVLVYTVFSATDAKRNARDSH-VPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDD 255 (287)
Q Consensus 177 ~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~~-~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~ 255 (287)
+.++.|+++|++|+++.+......+..++.. .....++.+|+++.+.+++++..||+++|||+++++.+. ++..|.+
T Consensus 3 ~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~--~~i~~~~ 80 (231)
T PRK05420 3 KKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAG--GRFPAKE 80 (231)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHh--CCCCHHH
Confidence 5789999999999998877432211111111 112248999999999999999999999999999999996 3468999
Q ss_pred ceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 256 HWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 256 ~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
.|+||++|++|+++|+.+.+.++..
T Consensus 81 ~~~Y~~aQ~lGa~~ga~l~~~~~~~ 105 (231)
T PRK05420 81 LVPYIIAQVVGGIAAAAVLYLIASG 105 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999877766643
No 24
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.47 E-value=1.2e-13 Score=124.86 Aligned_cols=104 Identities=22% Similarity=0.299 Sum_probs=83.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCC
Q 023107 175 KGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWD 254 (287)
Q Consensus 175 ~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~ 254 (287)
..+.++.|+++|++|+++.++..........+......++.+|+++.+.+++.+.+||+++|||+++++.+.. +..|.
T Consensus 49 ~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g--~i~~~ 126 (294)
T PTZ00016 49 NVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFG--KFPWK 126 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhc--cCCHH
Confidence 3468999999999999988876543221111111234678899999999999999999999999999999963 46899
Q ss_pred cceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 255 DHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 255 ~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
+.|+||++|++|+++|+.+.+.++++
T Consensus 127 ~~~~YiiaQ~lGa~~ga~ll~~~~~~ 152 (294)
T PTZ00016 127 KLPGYFVAQLLGAFVGAACVYGLYYG 152 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999987777654
No 25
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.45 E-value=2.5e-13 Score=118.01 Aligned_cols=95 Identities=24% Similarity=0.267 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhc-CC
Q 023107 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLAR-KL 127 (287)
Q Consensus 49 ~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g-~~ 127 (287)
+.++.++.|+++|++++++.+.+.... ++..... ..++.+|+.++..++..+++||+|+|||++++..+.+ ..
T Consensus 120 ~~~~~~~~E~i~T~~lv~~~~~~~~~~----~~~~~~~--~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~~~ 193 (216)
T TIGR00861 120 SSGQAFFVEFIGTAILVLVIFATTDPR----NRVPRGG--FAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAGLA 193 (216)
T ss_pred cHHHHHHHHHHHHHHHHHHHheeecCC----CCCCCCc--cHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhccc
Confidence 568999999999999999887654321 1111111 3678899999999999999999999999999999986 57
Q ss_pred CchhHHHHHHHhhHhHhHhhHH
Q 023107 128 SLTRAVFYMVMQCLGAVCGAGV 149 (287)
Q Consensus 128 ~~~~~~~yi~aQ~lGa~~g~~~ 149 (287)
+|.+.|+||++|++|+++|+.+
T Consensus 194 ~~~~~~vy~vap~~Ga~~a~~~ 215 (216)
T TIGR00861 194 GWGNHWVYWVGPIIGAILGALV 215 (216)
T ss_pred cccceeHHHHHHHHHHHHHHHh
Confidence 8999999999999999998864
No 26
>PLN00027 aquaporin TIP; Provisional
Probab=99.44 E-value=2.4e-13 Score=120.58 Aligned_cols=103 Identities=22% Similarity=0.326 Sum_probs=82.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcc--cc--ccCCC-CCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCC
Q 023107 175 KGDGLGAEIIGTFVLVYTVFSATD--AK--RNARD-SHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNK 249 (287)
Q Consensus 175 ~~~~~~~E~~~T~~l~~~v~~~~~--~~--~~~~~-~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~ 249 (287)
.++.++.|+++|++|+++.++... .+ ...+. .......++.+|+++.+.+++.+..||+++||||++++.+. +
T Consensus 19 ~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~--g 96 (252)
T PLN00027 19 ALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIG--G 96 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHh--C
Confidence 457899999999999999887531 11 11110 11112468999999999999999999999999999999984 3
Q ss_pred CCCCCcceehhhhhHHHHHHHHHHHHHHhc
Q 023107 250 DHAWDDHWIFWVGPFIGAALAAVYHQIVIR 279 (287)
Q Consensus 250 ~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~ 279 (287)
+..|...|+||++|++|+++|+++++.+..
T Consensus 97 ~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 126 (252)
T PLN00027 97 NITLLRGILYWIAQLLGSVVACLLLKFSTG 126 (252)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467889999999999999999999987754
No 27
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.30 E-value=1.7e-12 Score=113.18 Aligned_cols=99 Identities=20% Similarity=0.212 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcCCC
Q 023107 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLS 128 (287)
Q Consensus 49 ~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~ 128 (287)
+.+|.++.|++.||+|+|..++.....+.+ ...++.+|+.+.+.+++.+++||+++|||.+++.++..+.
T Consensus 130 ~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~---------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~~- 199 (238)
T KOG0223|consen 130 STGQGLVIEIILTFILVFTVFATATDPRRS---------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYGS- 199 (238)
T ss_pred CcchhHHHHHHHHHHHhheeEEEeecCCCc---------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhcC-
Confidence 457899999999999999876533322111 3367889999999999999999999999999999999884
Q ss_pred chhHHHHHHHhhHhHhHhhHHHHhhcCCc
Q 023107 129 LTRAVFYMVMQCLGAVCGAGVVKGFEGSK 157 (287)
Q Consensus 129 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~ 157 (287)
|..+|+||+++++|+++++++...++..+
T Consensus 200 w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~ 228 (238)
T KOG0223|consen 200 WDDHWIYWVGPLLGAILAALIYRLVFIPD 228 (238)
T ss_pred CCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999999988877654
No 28
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.29 E-value=4.5e-12 Score=110.36 Aligned_cols=107 Identities=22% Similarity=0.267 Sum_probs=82.9
Q ss_pred CchhHHHHHHHHHHHHHHHhccc---cccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCC
Q 023107 177 DGLGAEIIGTFVLVYTVFSATDA---KRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAW 253 (287)
Q Consensus 177 ~~~~~E~~~T~~l~~~v~~~~~~---~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~ 253 (287)
+-++.||++|++|++...+.... +.............+.+|+.+.+.+++.+++||+|+|||.+++.++.. ..+|
T Consensus 6 ~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g--~fp~ 83 (241)
T COG0580 6 KKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRG--RFPW 83 (241)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhC--CCCH
Confidence 45799999999999966543211 111111111234689999999999999999999999999999999964 4789
Q ss_pred CcceehhhhhHHHHHHHHHHHHHHhccCCCcC
Q 023107 254 DDHWIFWVGPFIGAALAAVYHQIVIRAIPFKS 285 (287)
Q Consensus 254 ~~~wvy~v~p~~Ga~~a~~~~~~~~~~~~~~~ 285 (287)
.+...||++|++|+++|+.+...++.++..+.
T Consensus 84 ~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~ 115 (241)
T COG0580 84 RKVLPYIVAQVLGAFAGAALLYLLYYGKILET 115 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Confidence 99999999999999999988888777654443
No 29
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.28 E-value=5.6e-12 Score=111.29 Aligned_cols=102 Identities=28% Similarity=0.297 Sum_probs=81.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHhccccccCCCCC-CCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCC
Q 023107 175 KGDGLGAEIIGTFVLVYTVFSATDAKRNARDSH-VPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAW 253 (287)
Q Consensus 175 ~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~~-~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~ 253 (287)
..+.+++||++|++|++.-++...+....+..+ ...-..+.+|+++.+.+++.+.+||+|+|||++++..++. ...|
T Consensus 31 l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g--~~p~ 108 (316)
T KOG0224|consen 31 LLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILG--RLPW 108 (316)
T ss_pred HHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhc--CCCh
Confidence 357899999999999998887655444332221 1233578999999999999999999999999999999974 4799
Q ss_pred CcceehhhhhHHHHHHHHHHHHHHh
Q 023107 254 DDHWIFWVGPFIGAALAAVYHQIVI 278 (287)
Q Consensus 254 ~~~wvy~v~p~~Ga~~a~~~~~~~~ 278 (287)
.++.+|.++|++||.+|+......+
T Consensus 109 ~k~p~Y~~aQ~iGAF~gaa~~y~~y 133 (316)
T KOG0224|consen 109 KKFPVYVLAQFIGAFLGAATVYGLY 133 (316)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986544443
No 30
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.14 E-value=3e-11 Score=105.60 Aligned_cols=105 Identities=25% Similarity=0.342 Sum_probs=80.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcc--ccccCCC--C--CCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHh
Q 023107 174 TKGDGLGAEIIGTFVLVYTVFSATD--AKRNARD--S--HVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIF 247 (287)
Q Consensus 174 s~~~~~~~E~~~T~~l~~~v~~~~~--~~~~~~~--~--~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~ 247 (287)
+..+.++.|+++|+++++..+.... .+...+. + ......++..|+.+.+.++++++.||+++|||.+++..+.
T Consensus 6 ~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~~l~- 84 (227)
T PF00230_consen 6 SLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAFALT- 84 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhheeee-
Confidence 3457899999999999997776321 1111110 0 0112346677899999999999999999999999999995
Q ss_pred CCCCCCCcceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 248 NKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 248 ~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
+...|.+..+|+++|++|+++|+.+.+.++++
T Consensus 85 -g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~ 116 (227)
T PF00230_consen 85 -GRISWKKAIVYIIAQFLGAFLGALLVYALYPD 116 (227)
T ss_dssp -TSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTH
T ss_pred -eeecccceeeEEeeccccccccccchhhcccC
Confidence 45789999999999999999999998888766
No 31
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=94.88 E-value=1.4 Score=39.43 Aligned_cols=186 Identities=17% Similarity=0.116 Sum_probs=94.3
Q ss_pred hhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCc
Q 023107 87 IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGA 166 (287)
Q Consensus 87 ~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~ 166 (287)
.+.-++.+++.+.+.+++.+..-=+ |--.+......++++|.+.+--|+-=.+|=++|++++..++.-.-......+.
T Consensus 64 ~lvg~~~F~~GLilVv~~g~ELfT~--n~m~~t~~~~~k~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~~ 141 (265)
T COG2116 64 KLVGGLVFSLGLILVVIAGSELFTS--NTMLLTVGVLSKKISWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTANGQ 141 (265)
T ss_pred HHHHHHHHHHHHHHhhhhCcccccc--chhHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccch
Confidence 3444556666665566655543211 43344445567889999988888777777777777766554111000011111
Q ss_pred c-----cc---cCCCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHH
Q 023107 167 N-----VV---AHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 238 (287)
Q Consensus 167 ~-----~~---~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPA 238 (287)
. .. .-+.+..+.|.--.+|.++.++.++..-.-|.. .-+-+.+-+-+++-+ ...+.=...|-.
T Consensus 142 ~~~~~~~~a~~K~~~t~~~~F~~GI~cN~lVclAvwm~~~~k~~-------~~K~~~m~~pv~~Fv--~~GfeH~VANm~ 212 (265)
T COG2116 142 WGLFVLGVAEHKLHHTFLEAFAKGILCNWLVCLAVWMSYSAKDG-------AAKIFAIILPVMLFV--ASGFEHSVANMF 212 (265)
T ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhcccch-------hhHHHHHHHHHHHHH--HcCCceeeehHH
Confidence 1 00 112344566777777888877777765432221 112333333333332 222332344532
Q ss_pred hhHHHHHHhCCCCCCCc-ce---eh-hhhhHH-HHHHHHHHHHHHhccCCCc
Q 023107 239 RSLGAAIIFNKDHAWDD-HW---IF-WVGPFI-GAALAAVYHQIVIRAIPFK 284 (287)
Q Consensus 239 r~lg~~i~~~~~~~~~~-~w---vy-~v~p~~-Ga~~a~~~~~~~~~~~~~~ 284 (287)
.-- ......+...|.+ .| ++ .+|-++ |+++-++.|+++++.+..+
T Consensus 213 ~i~-~~~~~~~~~~~~~fi~~Nlipv~lGNivGG~v~vgl~Y~~~~~~~~~~ 263 (265)
T COG2116 213 MIP-WAAVFSGALTWADFILKNLIPVTLGNIVGGAVFVGLMYWYLYRKQNRY 263 (265)
T ss_pred HHH-HHHHcCChhhhHHHHHHHHHHHHHhchhcchhhhhHHHHHhccccccc
Confidence 211 2333333345554 22 22 355555 5677788888887775443
No 32
>PRK10805 formate transporter; Provisional
Probab=89.18 E-value=17 Score=32.96 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhhhccC-cCCCccChHHHHHHHHhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcC-CcchhhcCCC--
Q 023107 90 IAWAFGGMIFALVYCTAG-ISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEG-SKNYERLGGG-- 165 (287)
Q Consensus 90 ~~~~~g~~v~~~i~~~~~-iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~-~~~~~~~~~~-- 165 (287)
.++.+.+.+.+.++.-+. .+| |--.++ ..+.+|.+|.+..-.|.-=.+|=++|++++-.+.. ........+.
T Consensus 71 ~~~~F~vGlilIvl~g~eLFTg---n~l~~~-~~~~~~~~~~~~lr~w~iv~~GNliGal~~a~l~~~s~~~~~~~~~~~ 146 (285)
T PRK10805 71 GGICFSLGLILCVVCGADLFTS---TVLIVV-AKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWG 146 (285)
T ss_pred HHHHHHHHHHHHHHhCcccchh---hHHHHH-HHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCccHHH
Confidence 345555555555555444 344 655554 46788999988885555555555555555333211 1100000000
Q ss_pred c-----ccccCCCCCCCchhHHHHHHHHHHHHHHHhc
Q 023107 166 A-----NVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 197 (287)
Q Consensus 166 ~-----~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~ 197 (287)
. ..-..+.+.++.|+-=.+|.++..+.++...
T Consensus 147 ~~~~~~a~~K~~~~~~~~f~~gI~CN~lVclaV~~~~ 183 (285)
T PRK10805 147 LNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSY 183 (285)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0001134556777777788888888877543
No 33
>PRK11562 nitrite transporter NirC; Provisional
Probab=87.79 E-value=20 Score=32.16 Aligned_cols=182 Identities=7% Similarity=-0.002 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhhhhccC-cCCCccChHHHHHHHHhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCC--cchhhcCCCc
Q 023107 90 IAWAFGGMIFALVYCTAG-ISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGS--KNYERLGGGA 166 (287)
Q Consensus 90 ~~~~~g~~v~~~i~~~~~-iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~--~~~~~~~~~~ 166 (287)
.+..+++.+.+.++.-+. .+| |=.......+.|+.+|.+.+-.|.-=.+|=++|++++..+... ..........
T Consensus 61 ~g~~F~~GLilVi~~G~eLFTg---n~~~~~~~~~~~~~s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~~~~~~ 137 (268)
T PRK11562 61 MGATFGIALTLVIIAGSELFTG---HTMFLTFGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTSI 137 (268)
T ss_pred HHHHHHHHHHHHHHhCcccccc---chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHH
Confidence 344555555555555444 223 5444445677788998888877776677777776665443211 0000000000
Q ss_pred ----ccccCCCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHH
Q 023107 167 ----NVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLG 242 (287)
Q Consensus 167 ----~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg 242 (287)
..-..+.+.++.|+-=.+|.++..+.++.....+. .. .-+.+-+.+++-+.++ ..=...|= --+.
T Consensus 138 ~~~ia~~K~~~~~~~~f~~gI~CNwLVclavw~~~~~~~--~g------Ki~~i~~pI~~Fv~~G--FEH~IANm-~~~~ 206 (268)
T PRK11562 138 VHSVALAKTTAPAMVLFFKGALCNWLVCLAIWMAIRTEG--AA------KFIAIWWCLLAFIASG--YEHSVANM-TLFA 206 (268)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccc--cc------hhHHHHHHHHHHHHcC--CcchhHhH-HHHH
Confidence 00011234566777777888888887776543221 11 1222222332222222 11123341 1233
Q ss_pred HHHHhCC--CCCCCc---cee-hhhhhHHHH-HHHHHHHHHHhccCCCcC
Q 023107 243 AAIIFNK--DHAWDD---HWI-FWVGPFIGA-ALAAVYHQIVIRAIPFKS 285 (287)
Q Consensus 243 ~~i~~~~--~~~~~~---~wv-y~v~p~~Ga-~~a~~~~~~~~~~~~~~~ 285 (287)
..++... ...|.. .++ =.+|-++|+ ++-++.|+++++.++.+.
T Consensus 207 l~~~~~~~~~~~~~~~~~nlipvtLGNivGG~v~vg~~y~~~~~~~~~~~ 256 (268)
T PRK11562 207 LSWFGHHSEAYTLAGIGHNLLWVTLGNTLSGAVFMGLGYWYATPKANRPV 256 (268)
T ss_pred HHHHccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCch
Confidence 3333211 112211 122 247788876 677788888887766443
No 34
>TIGR00790 fnt formate/nitrite transporter. symport. HCO2 - efflux may be driven by the membrane potential by a uniport mechanism or by H+ antiport.
Probab=87.62 E-value=19 Score=31.66 Aligned_cols=104 Identities=18% Similarity=0.139 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhhhccC-cCCCccChHHHHHHHHhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCc-ch-hhcCC--
Q 023107 90 IAWAFGGMIFALVYCTAG-ISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSK-NY-ERLGG-- 164 (287)
Q Consensus 90 ~~~~~g~~v~~~i~~~~~-iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~-~~-~~~~~-- 164 (287)
.++.+.+.+.+.++.-+. .+| |-......++.||.+|.+..-.|.-=.+|=++|+.++-.+.... .. ...+.
T Consensus 46 ~~~~F~~gl~~Iv~~g~eLfTg---n~~~~~~~~~~~~~~~~~~l~~w~~~~~gNlvG~~~~a~l~~~~~~~~~~~~~~~ 122 (239)
T TIGR00790 46 GGATFPIGLILVVIAGSDLFTG---NTLFVTMALLRGKISWGDLLINWVVSWLGNLVGALFVAYLFSYLGGILTANGPWG 122 (239)
T ss_pred HHHHHHHHHheeeeeCcccccc---chHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCccHHH
Confidence 345555555444444333 222 54444455778899988888777776777777766654432110 00 00000
Q ss_pred -Cc---ccccCCCCCCCchhHHHHHHHHHHHHHHHh
Q 023107 165 -GA---NVVAHGYTKGDGLGAEIIGTFVLVYTVFSA 196 (287)
Q Consensus 165 -~~---~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~ 196 (287)
.. ..-..+.+.++.++--++|.++..+.++..
T Consensus 123 ~~~~~~a~~K~~~~~~~~f~~gilcn~lV~lav~~~ 158 (239)
T TIGR00790 123 VGSLAIAEHKAHHTFVEAFFLGILCNWLVCLAVWMS 158 (239)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 001123455677777788888888877653
No 35
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=83.36 E-value=16 Score=32.38 Aligned_cols=109 Identities=16% Similarity=0.070 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCc-chhhcCCC-
Q 023107 88 QGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSK-NYERLGGG- 165 (287)
Q Consensus 88 ~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~-~~~~~~~~- 165 (287)
+..++.+++.+.+.+..-+..-=+ |-.+....++.|+.+|.+.+-.|.-=.+|=++|++++-.+.... ... ..+.
T Consensus 58 l~~g~~F~~Gl~lIv~~g~eLfTg--n~~~~~~~~~~~~~~~~~~l~~w~~v~~gNliG~~~~a~l~~~~~~~~-~~~~~ 134 (250)
T PF01226_consen 58 LVGGLVFPIGLVLIVFLGGELFTG--NMMVMTLALLNKRISWKKLLRNWGIVYLGNLIGALLFAYLFAFSGGFM-SSPAM 134 (250)
T ss_dssp HHHHHHHTHHHHHHHHHT---TTT--TCHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGGG-TTTHH
T ss_pred HHHHHHHHHHHHHHHHhcchhccc--chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc-ccHHH
Confidence 344555666665555554442212 66666677788999998887777666666666666644432111 011 0000
Q ss_pred ------cccccCCCCCCCchhHHHHHHHHHHHHHHHhccc
Q 023107 166 ------ANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDA 199 (287)
Q Consensus 166 ------~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~ 199 (287)
...-..+.+.++.|+-=.+|.++..+.++.....
T Consensus 135 ~~~~~~~a~~K~~~~~~~~f~~gI~cN~lVclav~~~~~~ 174 (250)
T PF01226_consen 135 GEYLISVAEHKVSHTFWELFFRGILCNWLVCLAVWLAFAA 174 (250)
T ss_dssp HHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0011123356677778888888888888875443
No 36
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=70.04 E-value=1.2e+02 Score=30.27 Aligned_cols=36 Identities=11% Similarity=-0.050 Sum_probs=29.0
Q ss_pred HHhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCc
Q 023107 122 LLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSK 157 (287)
Q Consensus 122 ~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~ 157 (287)
+-....|......++.+.++|+.+|....+.+.|.-
T Consensus 379 fa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~~ 414 (650)
T PF04632_consen 379 FATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPHL 414 (650)
T ss_pred HcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 333455788888999999999999999988887754
No 37
>PRK09713 focB putative formate transporter; Provisional
Probab=60.08 E-value=1.3e+02 Score=27.13 Aligned_cols=105 Identities=10% Similarity=-0.004 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcC-CcchhhcCCC---
Q 023107 90 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEG-SKNYERLGGG--- 165 (287)
Q Consensus 90 ~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~-~~~~~~~~~~--- 165 (287)
-++.+.+.+.+.++.-+..-=+ |=. ++.....++.+|++....|.-=.+|=++|++++.++.. ..........
T Consensus 70 ~g~~F~vGLilIv~~g~ELfTg--N~~-~~~~~~~~~i~~~~~l~~w~iv~~GNlvGal~~A~l~~~s~~~~~~~~~~~~ 146 (282)
T PRK09713 70 GGLCFTLGFILLAVCGTSLFTS--SVM-TVMAKSRGVISWRTWLINALLVACGNLAGIACFSLLIWFSGLVMSENAMWGV 146 (282)
T ss_pred HHHHHHHHHHHHHHhCccccHH--HHH-HHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhHHH
Confidence 3445555555555554442212 322 23335688889888885544444444444444333221 1101000000
Q ss_pred -cc---cccCCCCCCCchhHHHHHHHHHHHHHHHhc
Q 023107 166 -AN---VVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 197 (287)
Q Consensus 166 -~~---~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~ 197 (287)
.. .-..+.+.++.|+--++|.++..+.++...
T Consensus 147 ~~~~ia~~K~~~~~~~~F~~gI~CN~lVclaV~~~~ 182 (282)
T PRK09713 147 AVLHCAEGKMHHTFTESVSLGIMCNLMVCLALWMSY 182 (282)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 001234567788888888888888887644
No 38
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=43.08 E-value=9.2 Score=35.52 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.6
Q ss_pred hhccCcCCCccChHHHHHHHHhc
Q 023107 103 YCTAGISGGHINPAVTFGLLLAR 125 (287)
Q Consensus 103 ~~~~~iSGah~NPavTla~~l~g 125 (287)
.+++.-+|||+.||+.++-.+..
T Consensus 5 ~~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 5 VFTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred EEEcCCcHHHHHHHHHHHHHHHh
Confidence 45667789999999999999875
No 39
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=37.21 E-value=8 Score=30.09 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=18.2
Q ss_pred ccCcCCCccChHHHHHHHHhcC
Q 023107 105 TAGISGGHINPAVTFGLLLARK 126 (287)
Q Consensus 105 ~~~iSGah~NPavTla~~l~g~ 126 (287)
.+.=|+||+||.+.++..+.++
T Consensus 4 ~~~Gt~Ghv~P~lala~~L~~r 25 (139)
T PF03033_consen 4 ATGGTRGHVYPFLALARALRRR 25 (139)
T ss_dssp EEESSHHHHHHHHHHHHHHHHT
T ss_pred EEcCChhHHHHHHHHHHHHhcc
Confidence 3445789999999999999865
No 40
>KOG4647 consensus Uncharacterized membrane protein [Function unknown]
Probab=29.94 E-value=1.5e+02 Score=25.93 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=24.8
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 023107 37 APLFEPGELKSWSFYRAGIAEFMATFLFLYITV 69 (287)
Q Consensus 37 ~~~~~~~~~~~~~l~r~~~aEf~gTf~lv~~~~ 69 (287)
.++.+-.|.--.++||++++|.+--|+|.++=.
T Consensus 81 ~~R~~g~eyv~~sf~~R~~AE~IDffilf~~K~ 113 (263)
T KOG4647|consen 81 QPRVDGVEYVAASFLRRLLAELIDFFILFSFKL 113 (263)
T ss_pred ccccCceeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666667899999999999888876543
No 41
>COG0730 Predicted permeases [General function prediction only]
Probab=28.98 E-value=3.9e+02 Score=23.23 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=25.6
Q ss_pred HHHhcCCCchhHHHHHHHhhHhHhHhhHHHHhh
Q 023107 121 LLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGF 153 (287)
Q Consensus 121 ~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~ 153 (287)
..-.++.+|+....+..+=++|+++|+.+...+
T Consensus 65 ~~k~~~v~~~~~~~l~~~~~~G~~lG~~l~~~~ 97 (258)
T COG0730 65 YLKRGNVDWKLALILLLGALIGAFLGALLALLL 97 (258)
T ss_pred HHHcCCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334467789999999999999999996665544
No 42
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=26.52 E-value=1.1e+02 Score=20.76 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=21.4
Q ss_pred HHhhHhHhHhhHHHH-hhcCCcchhhcCCCcccccCCCCCCCchhHHHHHHHHHH
Q 023107 137 VMQCLGAVCGAGVVK-GFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLV 190 (287)
Q Consensus 137 ~aQ~lGa~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~ 190 (287)
..|+.|+++.+.++- ..+-+ +.+..|.+.++.+.
T Consensus 16 ~iQffg~lv~agil~~~vy~d--------------------r~yv~~lf~~fa~~ 50 (60)
T PF10841_consen 16 FIQFFGALVMAGILIYCVYLD--------------------RPYVPELFMTFAIF 50 (60)
T ss_pred HHHHHHHHHHHHHHHhheeeC--------------------CCCcHHHHHHHHHH
Confidence 368888888776644 33332 34667777776654
No 43
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=26.45 E-value=69 Score=22.21 Aligned_cols=31 Identities=29% Similarity=0.753 Sum_probs=19.5
Q ss_pred HhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHH
Q 023107 238 ARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAA 271 (287)
Q Consensus 238 Ar~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~ 271 (287)
..++|-++....+...+..| ||+| +|+++|-
T Consensus 9 ~~tlG~~vL~~rG~~~~~~W-yWIg--vgaL~G~ 39 (65)
T PF08370_consen 9 NSTLGVAVLKSRGLFTESYW-YWIG--VGALLGF 39 (65)
T ss_pred CCcHHHHHHHHcCCCCCCcE-Eeeh--HHHHHHH
Confidence 36788888764444444445 7776 5666664
Done!