Query 023107
Match_columns 287
No_of_seqs 192 out of 1670
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 16:29:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cn5_A Aquaporin; membrane pro 100.0 8.1E-59 2.8E-63 417.5 17.9 258 27-285 37-294 (304)
2 3iyz_A Aquaporin-4; water tran 100.0 3.1E-54 1E-58 389.9 23.6 248 26-283 22-274 (340)
3 3gd8_A Aquaporin-4; proton exc 100.0 3.7E-53 1.3E-57 366.9 21.1 222 49-280 2-223 (223)
4 1j4n_A Aquaporin 1; membrane p 100.0 4.1E-52 1.4E-56 370.0 24.7 231 43-282 3-237 (271)
5 2zz9_A Aquaporin-4; water tran 100.0 1.8E-52 6.2E-57 375.4 22.4 230 43-282 5-234 (301)
6 3d9s_A Aquaporin-5, AQP-5; aqu 100.0 7.5E-52 2.6E-56 366.9 20.4 227 43-283 4-231 (266)
7 2b6o_A Aquaporin-0, lens fiber 100.0 6.4E-51 2.2E-55 360.9 24.6 226 43-282 2-227 (263)
8 2w2e_A AQY1, aquaporin, aquapo 100.0 3.9E-51 1.3E-55 364.4 23.0 223 47-281 41-267 (279)
9 3llq_A Aquaporin Z 2; aquapori 100.0 1.4E-51 4.8E-56 362.2 17.9 224 46-278 25-253 (256)
10 2o9g_A Aquaporin Z; integral m 100.0 1.2E-50 4.1E-55 353.8 19.1 222 50-280 4-232 (234)
11 2f2b_A Aquaporin AQPM; protein 100.0 2.2E-50 7.5E-55 354.9 19.8 226 49-279 3-245 (246)
12 1ldf_A Glycerol uptake facilit 100.0 1E-50 3.5E-55 363.3 17.5 228 48-282 5-259 (281)
13 3c02_A Aquaglyceroporin; membr 100.0 1.1E-50 3.7E-55 358.9 14.4 228 48-282 7-246 (258)
14 2f2b_A Aquaporin AQPM; protein 99.5 2E-14 6.9E-19 125.9 10.4 99 49-155 142-245 (246)
15 2b6o_A Aquaporin-0, lens fiber 99.5 3.4E-14 1.2E-18 125.4 7.4 103 175-281 9-111 (263)
16 3llq_A Aquaporin Z 2; aquapori 99.4 2.4E-13 8.1E-18 119.2 7.5 105 174-280 28-133 (256)
17 2zz9_A Aquaporin-4; water tran 99.4 1.1E-12 3.9E-17 117.4 9.9 106 174-281 11-118 (301)
18 3d9s_A Aquaporin-5, AQP-5; aqu 99.4 3.9E-13 1.3E-17 118.7 6.7 102 175-280 11-112 (266)
19 3c02_A Aquaglyceroporin; membr 99.4 3.3E-13 1.1E-17 118.8 5.5 104 175-280 9-112 (258)
20 3gd8_A Aquaporin-4; proton exc 99.4 6.5E-13 2.2E-17 114.5 6.9 103 176-280 4-108 (223)
21 2o9g_A Aquaporin Z; integral m 99.4 5.1E-13 1.7E-17 116.0 5.9 104 176-281 5-109 (234)
22 1ldf_A Glycerol uptake facilit 99.4 6.2E-13 2.1E-17 118.5 6.3 104 175-280 7-110 (281)
23 1j4n_A Aquaporin 1; membrane p 99.3 1E-12 3.5E-17 116.5 7.3 104 175-280 10-120 (271)
24 3iyz_A Aquaporin-4; water tran 99.3 5.6E-13 1.9E-17 120.5 5.2 104 175-280 51-156 (340)
25 3cn5_A Aquaporin; membrane pro 99.3 8.7E-13 3E-17 118.3 5.1 105 174-280 59-166 (304)
26 2w2e_A AQY1, aquaporin, aquapo 99.3 2.1E-12 7.1E-17 114.8 6.4 104 175-280 44-154 (279)
27 3kcu_A Probable formate transp 91.2 3.7 0.00013 35.9 12.8 108 88-199 69-185 (285)
28 3kly_A Putative formate transp 83.3 12 0.0004 32.6 11.0 106 89-199 69-184 (280)
29 3tds_E Formate/nitrite transpo 80.6 10 0.00035 32.8 9.5 182 88-281 65-259 (268)
30 4fc4_A Nitrite transporter NIR 57.3 74 0.0025 27.2 9.7 183 88-284 59-255 (261)
31 3s2u_A UDP-N-acetylglucosamine 53.6 2.3 7.9E-05 38.1 -0.5 23 104-126 7-29 (365)
No 1
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=100.00 E-value=8.1e-59 Score=417.51 Aligned_cols=258 Identities=74% Similarity=1.291 Sum_probs=208.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhcc
Q 023107 27 SDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTA 106 (287)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~ 106 (287)
+.||+++|++.+..+.+|+++++++|++++||+|||+|+|++++++++.....++....+++.+++++|+++++.+|+++
T Consensus 37 ~~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g 116 (304)
T 3cn5_A 37 HGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTA 116 (304)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEee
Confidence 45999999888888999999999999999999999999999999887655433334456788899999999999999999
Q ss_pred CcCCCccChHHHHHHHHhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHH
Q 023107 107 GISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGT 186 (287)
Q Consensus 107 ~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T 186 (287)
++||||+|||||+++++.|+++|.+++.||+||++||++|+++++.+++++ ++..+.+.+.+.++.+..++++.|+++|
T Consensus 117 ~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~-~~~~~~g~~~~~~~~s~~~~f~~E~i~T 195 (304)
T 3cn5_A 117 GISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGT 195 (304)
T ss_dssp TTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHTTTTCCCCCTTCCHHHHHHHHHHHH
T ss_pred ccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhccCcccccCCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999876 5555555555667788889999999999
Q ss_pred HHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHH
Q 023107 187 FVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIG 266 (287)
Q Consensus 187 ~~l~~~v~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~G 266 (287)
|+|+++++.++|+++....++.+.+.|+.||++++++.++.+++||++|||||||||+++++++..|+++|+||++|++|
T Consensus 196 fiLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~w~~~WvywvgPiiG 275 (304)
T 3cn5_A 196 FVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIG 275 (304)
T ss_dssp HHHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCCcCceEEEeehHHHH
Confidence 99999999988876643322223478999999999999999999999999999999999965446899999999999999
Q ss_pred HHHHHHHHHHHhccCCCcC
Q 023107 267 AALAAVYHQIVIRAIPFKS 285 (287)
Q Consensus 267 a~~a~~~~~~~~~~~~~~~ 285 (287)
+++|+++|++++.+.+.|.
T Consensus 276 a~laa~~y~~l~~~~~~~~ 294 (304)
T 3cn5_A 276 AAVAAAYHQYVLRAAAIKA 294 (304)
T ss_dssp HHHHHHHHHTTSCCCC---
T ss_pred HHHHHHHHHHHhCCCCCCc
Confidence 9999999999998876654
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=100.00 E-value=3.1e-54 Score=389.88 Aligned_cols=248 Identities=37% Similarity=0.609 Sum_probs=205.1
Q ss_pred CCCCCCCCCCCCCCC-----CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHH
Q 023107 26 QSDKDYKEPPPAPLF-----EPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFA 100 (287)
Q Consensus 26 ~~~~~~~~~~~~~~~-----~~~~~~~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~ 100 (287)
-+.+|+.+|.+.|.. ..++...+++||++++||+|||+|+|++++++++. ....+....+++.+++++|+++++
T Consensus 22 ~~~~~~~~~~~~ps~~~~~~~~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~-~~~~~~~~~g~l~Iala~GlaV~~ 100 (340)
T 3iyz_A 22 MGRDLYDDDDKDPSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINW-GGSENPLPVDMVLISLCFGLSIAT 100 (340)
T ss_pred cCCCCCCCCCCCCcchhhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCCCcchHHHHHHHHHHHHH
Confidence 344555555544422 12345556899999999999999999999988765 222223345678899999999999
Q ss_pred hhhhccCcCCCccChHHHHHHHHhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchh
Q 023107 101 LVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLG 180 (287)
Q Consensus 101 ~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 180 (287)
.+|+++++||||+|||||+++++.|+++|.+++.||+||++||++|+++++.++++. .. ...+.+.+.++.+..++++
T Consensus 101 ~v~~~g~ISGAHlNPAVTlal~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~-~~-~~lg~~~~~~~~s~~~~f~ 178 (340)
T 3iyz_A 101 MVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPS-VV-GGLGVTTVHGNLTAGHGLL 178 (340)
T ss_pred heeEeeccCcCeeChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hc-CceeeccCCCccCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998765 21 1223445566778889999
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehh
Q 023107 181 AEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFW 260 (287)
Q Consensus 181 ~E~~~T~~l~~~v~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~ 260 (287)
.|+++||+|+++++.+.|+++... ....|+.||+++.+..+.+++.||++|||||||||+++.+ .|.++||||
T Consensus 179 ~E~i~Tf~Lv~~Ila~~d~~~~~~----~~~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~---~w~~~WVyw 251 (340)
T 3iyz_A 179 VELIITFQLVFTIFASCDDKRTDV----TGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYW 251 (340)
T ss_pred HHHHHHHHHHHHHHHhhcCccCCc----ccchhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHcc---CCCcEeehh
Confidence 999999999999999988766432 2467999999998777788899999999999999999864 799999999
Q ss_pred hhhHHHHHHHHHHHHHHhccCCC
Q 023107 261 VGPFIGAALAAVYHQIVIRAIPF 283 (287)
Q Consensus 261 v~p~~Ga~~a~~~~~~~~~~~~~ 283 (287)
+||++|+++|+++|++++.+++.
T Consensus 252 vgPiiGailaallY~~l~~p~~~ 274 (340)
T 3iyz_A 252 VGPIIGAVLAGALYEYVFCPDVE 274 (340)
T ss_pred HHHHHHHHHHHHHHHHHhCCChh
Confidence 99999999999999999877553
No 3
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.7e-53 Score=366.92 Aligned_cols=222 Identities=41% Similarity=0.695 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcCCC
Q 023107 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLS 128 (287)
Q Consensus 49 ~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~ 128 (287)
++||++++||+|||+|+|++++++.+. ....+....+++.+++++|+++++.+++++++||||+|||||+++++.|+++
T Consensus 2 ~~~r~~~aEfiGT~~lv~~g~g~~~~~-~~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~ 80 (223)
T 3gd8_A 2 AFWKAVTAEFLAMLIFVLLSLGSTINW-GGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKIS 80 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCT-TTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcCCCC
Confidence 579999999999999999999988754 2222333456788999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCCC
Q 023107 129 LTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHV 208 (287)
Q Consensus 129 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~~~ 208 (287)
|.+++.|+++|++|+++|+.+++.+++++ .. ...+.+.+.++.+..++++.|+++||+|+++++...|+++...
T Consensus 81 ~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~-~~-~~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~---- 154 (223)
T 3gd8_A 81 IAKSVFYIAAQCLGAIIGAGILYLVTPPS-VV-GGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDV---- 154 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHH-HH-TTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCTTCSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc-cceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHhccccCCc----
Confidence 99999999999999999999999998765 21 1223455666778889999999999999999999988776432
Q ss_pred CchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 209 PILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 209 ~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
....|+.||+.+.......++.||++||||||||||++.+ +|+++|+||++|++|+++++++|++++.|
T Consensus 155 ~~~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~---~w~~~Wvy~vgP~~Ga~la~~~y~~~~~p 223 (223)
T 3gd8_A 155 TGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGPIIGAVLAGGLYEYVFCP 223 (223)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---CCTTTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhc---CCCcEEeehhHHHHHHHHHHHHHHHHcCC
Confidence 2467999999988777777789999999999999999974 79999999999999999999999998864
No 4
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=100.00 E-value=4.1e-52 Score=370.00 Aligned_cols=231 Identities=42% Similarity=0.724 Sum_probs=197.1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhccccC----CCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHH
Q 023107 43 GELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKS----NTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 118 (287)
Q Consensus 43 ~~~~~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavT 118 (287)
+|+++++++|++++||+|||+|+|++++++.+.... .......+.+.+++++|+++++.+++++++||||+|||||
T Consensus 3 ~e~~~~~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVT 82 (271)
T 1j4n_A 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVT 82 (271)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHHHH
Confidence 577788999999999999999999999987765421 1112223577899999999999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhcc
Q 023107 119 FGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATD 198 (287)
Q Consensus 119 la~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~ 198 (287)
+++++.|+++|.+++.||++|++||++|+++++.++++. .....+.+.+.++.+..++++.|+++|++|+++++++.|
T Consensus 83 la~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~~d 160 (271)
T 1j4n_A 83 LGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSL--PDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTD 160 (271)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--TTCCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccCC--cccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999998653 111223344566778889999999999999999999888
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHh
Q 023107 199 AKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 278 (287)
Q Consensus 199 ~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~ 278 (287)
+++... ..+.|+.||+.+.+..+..+++||++|||||||||+++.+ .|+++|+||++|++|+++|+++|++++
T Consensus 161 ~~~~~~----~~~~pl~IGl~v~~~~~~~~~~TG~a~NPAR~~Gpal~~~---~~~~~wv~~vgP~~Ga~la~~~y~~~~ 233 (271)
T 1j4n_A 161 RRRRDL----GGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITH---NFQDHWIFWVGPFIGAALAVLIYDFIL 233 (271)
T ss_dssp SSCCCC----CSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTT---CCTTTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCCCc----cccHHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHhC---CCcceeHHHHHHHHHHHHHHHHHHHHh
Confidence 765422 2578999999998777777889999999999999999864 799999999999999999999999998
Q ss_pred ccCC
Q 023107 279 RAIP 282 (287)
Q Consensus 279 ~~~~ 282 (287)
.++.
T Consensus 234 ~~~~ 237 (271)
T 1j4n_A 234 APRS 237 (271)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7643
No 5
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=100.00 E-value=1.8e-52 Score=375.39 Aligned_cols=230 Identities=40% Similarity=0.659 Sum_probs=194.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHH
Q 023107 43 GELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLL 122 (287)
Q Consensus 43 ~~~~~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~ 122 (287)
++..+.+++|++++||+|||+|+|++++++++.... .+....+++.+++++|+++++.+++++++||||+|||||++++
T Consensus 5 ~~~~~~~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~-~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~ 83 (301)
T 2zz9_A 5 KGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGS-ENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMV 83 (301)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHTTSCCTTCC--CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHHHHHHH
Confidence 456677899999999999999999999887654422 2233456788999999999999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhcccccc
Q 023107 123 LARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRN 202 (287)
Q Consensus 123 l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~ 202 (287)
+.|+++|.+++.||+||++||++|+++++.++++. .. ...+.+.+.++.+..++++.|+++||+|+++++.+.|+++.
T Consensus 84 ~~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~-~~-~~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~~d~~~~ 161 (301)
T 2zz9_A 84 CTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPS-VV-GGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRT 161 (301)
T ss_dssp HTSSSCTTTTHHHHHHHHHHHHHHHHHHHTTSCSC-GG-GTSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHSCSSSS
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cc-CceeeecCCcccchHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999875 22 12234455567788899999999999999999998887654
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhccCC
Q 023107 203 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIP 282 (287)
Q Consensus 203 ~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~~ 282 (287)
.. ..+.|+.||+.+.+..+.+++.||++|||||||||+++.+ .|.++|+||++|++|+++|+++|++++.+++
T Consensus 162 ~~----~~~~pl~IGl~v~i~~~~g~~~TG~a~NPAR~~GPal~~~---~w~~~WVy~vgPiiGailaa~ly~~l~~~~~ 234 (301)
T 2zz9_A 162 DV----TGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGPIIGAVLAGALYEYVFCPDV 234 (301)
T ss_dssp CC----SSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC---CCTTTTHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred Cc----cchHhHHHHHHHHHHHHHhcCCcccccCcHHHHHHHHHhC---CCcceeeeeeHHHHHHHHHHHHHHHHhCCch
Confidence 22 2478999999998888888889999999999999999974 7999999999999999999999999987543
No 6
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.5e-52 Score=366.91 Aligned_cols=227 Identities=37% Similarity=0.613 Sum_probs=196.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHH
Q 023107 43 GELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLL 122 (287)
Q Consensus 43 ~~~~~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~ 122 (287)
+|+++++++|++++||+|||+|+|+++++++... ....+++.+++++|+++++.+++++++||||+|||||++++
T Consensus 4 ~e~~~~~~~r~~laEfiGT~~lv~~g~g~~~~~~-----~~~~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla~~ 78 (266)
T 3d9s_A 4 KEVCSVAFLKAVFAEFLATLIFVFFGLGSALKWP-----SALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALL 78 (266)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCS-----SSCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred hhhhChHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCccHHHHHHHHHHHHHHHHHHHcccCcceECHHHHHHHH
Confidence 4667788999999999999999999999875321 12346788999999999999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhcccccc
Q 023107 123 LARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRN 202 (287)
Q Consensus 123 l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~ 202 (287)
+.|+++|.+++.|+++|++||++|+++++.+++++ . ....+.+.+.++.+..++++.|+++|++|+++++.+.|+++.
T Consensus 79 ~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~-~-~~~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~ 156 (266)
T 3d9s_A 79 VGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLN-A-RGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRT 156 (266)
T ss_dssp HTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-H-HTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccc-c-cCceeeccCCccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 99999999999999999999999999999999764 2 222333445566778899999999999999999999886654
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCc-ceehhhhhHHHHHHHHHHHHHHhccC
Q 023107 203 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDD-HWIFWVGPFIGAALAAVYHQIVIRAI 281 (287)
Q Consensus 203 ~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~-~wvy~v~p~~Ga~~a~~~~~~~~~~~ 281 (287)
.. ..+.|+.||+.+.+..+.++++||++|||||||||+++.+ .|++ +|+||++|++|+++|+++|++++.++
T Consensus 157 ~~----~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~---~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~ 229 (266)
T 3d9s_A 157 SP----VGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMN---RFSPAHWVFWVGPIVGAVLAAILYFYLLFPN 229 (266)
T ss_dssp SC----CCCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHT---CCCTTHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred Cc----cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHcC---CcccCEeeeehHHHHHHHHHHHHHHHHhCCC
Confidence 22 2468999999999999999999999999999999999974 7888 99999999999999999999998765
Q ss_pred CC
Q 023107 282 PF 283 (287)
Q Consensus 282 ~~ 283 (287)
+.
T Consensus 230 ~~ 231 (266)
T 3d9s_A 230 SL 231 (266)
T ss_dssp SC
T ss_pred ch
Confidence 43
No 7
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=100.00 E-value=6.4e-51 Score=360.88 Aligned_cols=226 Identities=36% Similarity=0.578 Sum_probs=195.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHH
Q 023107 43 GELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLL 122 (287)
Q Consensus 43 ~~~~~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~ 122 (287)
+|+++++++|++++||+|||+|+|+++++++.. +....+++.+++++|+++++.+++++++||||+|||||++.+
T Consensus 2 ~e~~~~~~~~~~laEfiGT~~Lv~~g~g~~~~~-----~~~~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla~~ 76 (263)
T 2b6o_A 2 WELRSASFWRAIFAEFFATLFYVFFGLGASLRW-----APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFL 76 (263)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-----CSSSCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCcchHHHHHHHHHHHHHHHHHhhccCcCeeChHHHHHHH
Confidence 366778899999999999999999999887532 112345678999999999999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhcccccc
Q 023107 123 LARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRN 202 (287)
Q Consensus 123 l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~ 202 (287)
+.|+++|.+++.|+++|++|+++|+.+++.+++++ +.. ..+.+.+.++.+..++++.|+++||+|+++++.+.|+++.
T Consensus 77 ~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~-~~~-~~~~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~ 154 (263)
T 2b6o_A 77 VGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPA-VRG-NLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRN 154 (263)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTT-TCS-SCSCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTSC
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccc-ccc-ccccccCCccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 99999999999999999999999999999999865 221 2234455667788899999999999999999999886654
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhccCC
Q 023107 203 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIP 282 (287)
Q Consensus 203 ~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~~ 282 (287)
.. ..+.|+.||+.+.+..++.+++||++|||||||||+++.+ .|+++|+||++|++|+++|+++|++++.++.
T Consensus 155 ~~----~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~---~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~~ 227 (263)
T 2b6o_A 155 GR----LGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTR---NFTNHWVYWVGPVIGAGLGSLLYDFLLFPRL 227 (263)
T ss_dssp SS----CCCHHHHHHHHHHHHHHHHTTTSTTCCCHHHHHHHHHHHT---CCTTCTHHHHHHHHHHHHHHHHHHTTTSCCS
T ss_pred CC----cccHHHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHcC---CccceeHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 32 2578999999999999999999999999999999999874 7999999999999999999999999987643
No 8
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=100.00 E-value=3.9e-51 Score=364.37 Aligned_cols=223 Identities=32% Similarity=0.498 Sum_probs=188.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhh--ccccC--CCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHH
Q 023107 47 SWSFYRAGIAEFMATFLFLYITVLTVM--GVSKS--NTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLL 122 (287)
Q Consensus 47 ~~~l~r~~~aEf~gTf~lv~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~ 122 (287)
.++.+|++++||+|||+|+|++++++. +.... ..+....+++.+++++|+++++.+++++++||||+|||||++++
T Consensus 41 ~~~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~ 120 (279)
T 2w2e_A 41 VRNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALV 120 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCccHHHHHHHHHHHHHHHHHHHhhcCccccChHHHHHHH
Confidence 346789999999999999999988642 22111 11222345778999999999999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhcccccc
Q 023107 123 LARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRN 202 (287)
Q Consensus 123 l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~ 202 (287)
+.|+++|.+++.|++||++||++|+++++.++++.. ...+.+.++.+..++++.|+++||+|+++++.+.++++.
T Consensus 121 ~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~-----~~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~ 195 (279)
T 2w2e_A 121 LARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEI-----AFANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHR 195 (279)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC-----CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCST
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccc-----eeeccCCccccHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999998752 112344456677889999999999999999998765543
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhccC
Q 023107 203 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAI 281 (287)
Q Consensus 203 ~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~ 281 (287)
. ..+.|+.||+.++++.++.++.||++|||||||||+++.+ ..|+++|+||++|++|+++|+++|++++..+
T Consensus 196 ~-----~~~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~--~~~~~~WVy~vgPiiGa~la~~ly~~l~~~~ 267 (279)
T 2w2e_A 196 A-----TWFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAAR--SFPNYHWIYWLGPILGAFLAYSIWQMWKWLN 267 (279)
T ss_dssp T-----GGGHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHT--CCCTTTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred C-----cCcHHHHHHHHHHHHHHhcccccccccChHHHHHHHHHhc--cchhhhhHHHHHHHHHHHHHHHHHHHHHccC
Confidence 1 2578999999999999999999999999999999999974 3457899999999999999999999997543
No 9
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=1.4e-51 Score=362.17 Aligned_cols=224 Identities=32% Similarity=0.537 Sum_probs=186.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhc
Q 023107 46 KSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLAR 125 (287)
Q Consensus 46 ~~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g 125 (287)
...+++|++++||+|||+|+|++++++...... +....+++.+++++|+++++.+++++++||||+|||||+++++.|
T Consensus 25 ~~~~l~r~~laEflGT~lLv~~G~G~~~~~~~~--~~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g 102 (256)
T 3llq_A 25 QSYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAF--PELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAG 102 (256)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHTTC--TTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHHHHHhc
Confidence 445689999999999999999999986543322 223456888999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHhhHhHhHhhHHHHhhcCCc-chhhcCC---Cccccc-CCCCCCCchhHHHHHHHHHHHHHHHhcccc
Q 023107 126 KLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSK-NYERLGG---GANVVA-HGYTKGDGLGAEIIGTFVLVYTVFSATDAK 200 (287)
Q Consensus 126 ~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~-~~~~~~~---~~~~~~-~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~ 200 (287)
+++|.+++.||+||++||++|+++++.++++. .++..+. +..... ...+..++++.|+++|++|+++++.+.|++
T Consensus 103 ~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t~p~~~s~~~~f~~E~i~Tf~Lv~~il~~~d~~ 182 (256)
T 3llq_A 103 RFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGR 182 (256)
T ss_dssp SSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccCCcccCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999988543 1221111 111112 245778899999999999999999988865
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHh
Q 023107 201 RNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 278 (287)
Q Consensus 201 ~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~ 278 (287)
+. +.+.|+.||+.+.++.++.++.||++||||||||||++.+ +..|+++||||+||++|+++|+++|+++.
T Consensus 183 ~~------~~~~pl~IGl~v~~i~~~~g~~TG~a~NPAR~lGPal~~g-~~~~~~~WVy~vgPi~Ga~la~~~y~~l~ 253 (256)
T 3llq_A 183 VP------AGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVG-GWALQQLWLFWLAPIVGGAAGAVIWKLFG 253 (256)
T ss_dssp SC------TTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHC-HHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CC------ccchhHHHHHHHHHHHHHhccccccccChHHHHHHHHHcC-CCcccceeeeeeHHHHHHHHHHHHHHHhc
Confidence 42 2478999999999999999999999999999999999874 34577999999999999999999999985
No 10
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=100.00 E-value=1.2e-50 Score=353.80 Aligned_cols=222 Identities=28% Similarity=0.498 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcCCCc
Q 023107 50 FYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSL 129 (287)
Q Consensus 50 l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~ 129 (287)
++|++++||+|||+|+|++++++...... +....+++.+++++|+++++.+++++++||||+|||||+++++.|+++|
T Consensus 4 l~r~~~aEf~GT~~lv~~g~g~~~~~~~~--~~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~ 81 (234)
T 2o9g_A 4 MFRKLAAESFGTFWLVFGGSGSAVLAAGF--PELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPA 81 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC--TTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCC--CCCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHHHhCCCCH
Confidence 68999999999999999999876432211 1223467889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhHhHhHhhHHHHhhcCCcc-hhhc-----CCCccccc-CCCCCCCchhHHHHHHHHHHHHHHHhcccccc
Q 023107 130 TRAVFYMVMQCLGAVCGAGVVKGFEGSKN-YERL-----GGGANVVA-HGYTKGDGLGAEIIGTFVLVYTVFSATDAKRN 202 (287)
Q Consensus 130 ~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~-~~~~-----~~~~~~~~-~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~ 202 (287)
++++.|+++|++|+++|+.+++.++++.. ++.. ..+..... .+.+..++++.|+++|++|+++++.+.|+++.
T Consensus 82 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~E~i~T~~Lv~~i~~~~d~~~~ 161 (234)
T 2o9g_A 82 KEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAP 161 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHTSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeeecCCCccchHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999987541 2211 11111111 24677889999999999999999999875432
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 203 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 203 ~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
+.+.|+.||+.+.++.++.+++||++||||||||||++++ +..|+++|+||++|++|+++++++|++++++
T Consensus 162 ------~~~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g-~~~~~~~Wv~~vgP~~Ga~la~~~y~~~~~~ 232 (234)
T 2o9g_A 162 ------AGFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQG-GWALEQLWFFWVVPIVGGIIGGLIYRTLLEK 232 (234)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHC-SHHHHSHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred ------cchHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhC-CCCCceeeeeehHHhHHHHHHHHHHHHHcCC
Confidence 2578999999999999999999999999999999999984 3467799999999999999999999999765
No 11
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=100.00 E-value=2.2e-50 Score=354.94 Aligned_cols=226 Identities=30% Similarity=0.416 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-cCCC--------CC-----CccchhHHHHHHHHHHHHhhhhccCcCCCccC
Q 023107 49 SFYRAGIAEFMATFLFLYITVLTVMGVS-KSNT--------KC-----STVGIQGIAWAFGGMIFALVYCTAGISGGHIN 114 (287)
Q Consensus 49 ~l~r~~~aEf~gTf~lv~~~~~~~~~~~-~~~~--------~~-----~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~N 114 (287)
+++|++++||+|||+|+|++++++.... .+++ .. ...+++.+++++|+++++.+++++++||||+|
T Consensus 3 ~~~~~~~aEfiGT~~lv~~g~g~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaH~N 82 (246)
T 2f2b_A 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHIN 82 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccccccccchhHHHHHHHHHHHHHhheecccccceeC
Confidence 4689999999999999999998776543 2110 01 12335669999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHHHHHHHHHH
Q 023107 115 PAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF 194 (287)
Q Consensus 115 PavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~ 194 (287)
||||+++++.|+++|++++.|+++|++|+++|+.+++.+++++.......+.+.+.++.+..++++.|+++|++|+++++
T Consensus 83 PAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~~E~i~Tf~Lv~~i~ 162 (246)
T 2f2b_A 83 PAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIM 162 (246)
T ss_dssp HHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCTHHHHTTGGGCCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhcceeeeccCccccchHHHHHHHHHHHHHHHheee
Confidence 99999999999999999999999999999999999999998742222222233444567888999999999999999999
Q ss_pred HhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHH--Hh-CCCCCCCcceehhhhhHHHHHHHH
Q 023107 195 SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI--IF-NKDHAWDDHWIFWVGPFIGAALAA 271 (287)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i--~~-~~~~~~~~~wvy~v~p~~Ga~~a~ 271 (287)
...++++.. ..+.|+.+|+.+.+++++.+++||+++||||||||++ .. +++..|++.|+||++|++|+++|+
T Consensus 163 ~~~~~~~~~-----~~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~~~w~~~~vy~vap~~Ga~laa 237 (246)
T 2f2b_A 163 GIAVDERAP-----KGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAA 237 (246)
T ss_dssp HHTTSTTSC-----TTCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHH
T ss_pred EEecCCCCC-----CceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHcCCCCCcceEEEeeeHHHHHHHHHH
Confidence 976544432 2468999999999999999999999999999999999 33 446789999999999999999999
Q ss_pred HHHHHHhc
Q 023107 272 VYHQIVIR 279 (287)
Q Consensus 272 ~~~~~~~~ 279 (287)
++|+++++
T Consensus 238 ~~y~~l~~ 245 (246)
T 2f2b_A 238 LTYQYLTS 245 (246)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHcC
Confidence 99999875
No 12
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=100.00 E-value=1e-50 Score=363.25 Aligned_cols=228 Identities=27% Similarity=0.368 Sum_probs=189.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcCC
Q 023107 48 WSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKL 127 (287)
Q Consensus 48 ~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~ 127 (287)
.+++|++++||+|||+|+|++++++.+...++. ..+.+.+++++|+++++.+++++++||||+|||||+++++.|++
T Consensus 5 ~~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~---~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~ 81 (281)
T 1ldf_A 5 STLKGQCIAEFLGTGLLIFFGVGCVAALKVAGA---SFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACF 81 (281)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHHHHcCCC
Confidence 357899999999999999999988766544321 23445689999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhc-----------------CCCcccccCCCCCCCchhHHHHHHHHHH
Q 023107 128 SLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERL-----------------GGGANVVAHGYTKGDGLGAEIIGTFVLV 190 (287)
Q Consensus 128 ~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~s~~~~~~~E~~~T~~l~ 190 (287)
+|.+++.||++|++||++|+++++.+++++ ++.. ....+.+.++.+..++++.|+++||+|+
T Consensus 82 ~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~~~s~~~~~~~E~i~Tf~Lv 160 (281)
T 1ldf_A 82 DKRKVIPFIVSQVAGAFCAAALVYGLYYNL-FFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILM 160 (281)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhccccccccccccccccccceeeccCCccccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998765 2111 0012233445678899999999999999
Q ss_pred HHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhC----CCC------CCCcceehh
Q 023107 191 YTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFN----KDH------AWDDHWIFW 260 (287)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~----~~~------~~~~~wvy~ 260 (287)
++++.+.|+++.... +.+.|+.||+.+.++.++.++.||++||||||||||+++. +.. +|.++||||
T Consensus 161 ~~il~~~d~~~~~~~---~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~g~g~~~~~~~~~~~~~WVy~ 237 (281)
T 1ldf_A 161 GLILALTDDGNGVPR---GPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPL 237 (281)
T ss_dssp HHHHHHHCTTSSSCC---GGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHH
T ss_pred HHHHHHhccCCCCcc---cchHHHHHHHHHHHHHHhcccccccccCcHhhHHHHHHHHhcccccccccccCCCceeeHHh
Confidence 999999887654311 2578999999999999999999999999999999999861 111 223899999
Q ss_pred hhhHHHHHHHHHHHHHHhccCC
Q 023107 261 VGPFIGAALAAVYHQIVIRAIP 282 (287)
Q Consensus 261 v~p~~Ga~~a~~~~~~~~~~~~ 282 (287)
++|++|+++|+++|+++++++.
T Consensus 238 vgPi~Ga~la~~~y~~l~~~~~ 259 (281)
T 1ldf_A 238 FGPIVGAIVGAFAYRKLIGRHL 259 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHhCccC
Confidence 9999999999999999987643
No 13
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=100.00 E-value=1.1e-50 Score=358.92 Aligned_cols=228 Identities=21% Similarity=0.314 Sum_probs=188.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcCC
Q 023107 48 WSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKL 127 (287)
Q Consensus 48 ~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~ 127 (287)
++++|++++||+|||+|+|++++++.+...++ ...+++.+++++|+++++.+++++++||||+|||||+++++.|++
T Consensus 7 ~~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~---~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~ 83 (258)
T 3c02_A 7 KSYVREFIGEFLGTFVLMFLGEGATANFHTTG---LSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSINKF 83 (258)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---STTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHhCCC
Confidence 45789999999999999999998776543221 134678899999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcC-C---CcccccCCCCCCCchhHHHHHHHHHHHHHHHhccccccC
Q 023107 128 SLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLG-G---GANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNA 203 (287)
Q Consensus 128 ~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~-~---~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~~ 203 (287)
+|++++.|+++|++||++|+++++.+++++ ++... . +......+.+..++++.|+++|++|+++++.+.|+++..
T Consensus 84 ~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~-~~~~~~~~~~~~~~~~~t~p~~~~~~~E~i~Tf~Lv~~i~~~~d~~~~~ 162 (258)
T 3c02_A 84 DLKKIPVYFFAQLLGAFVGTSTVYGLYHGF-ISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENICG 162 (258)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHTHHH-HHTTCSCTTCSSCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcchh-hhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhCcccCC
Confidence 999999999999999999999999998765 32211 1 111222233444589999999999999999998877542
Q ss_pred CCCCCCchh-HHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhC---CCCCC----CcceehhhhhHHHHHHHHHHHH
Q 023107 204 RDSHVPILA-PLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFN---KDHAW----DDHWIFWVGPFIGAALAAVYHQ 275 (287)
Q Consensus 204 ~~~~~~~~~-~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~---~~~~~----~~~wvy~v~p~~Ga~~a~~~~~ 275 (287)
.. ..+. |+.||+.+.++.++.+++||++||||||||||++++ ++..| .++|+||++|++|+++|+++|+
T Consensus 163 ~~---~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~g~~~~~~~~~y~Wv~~vgP~~Ga~la~~~y~ 239 (258)
T 3c02_A 163 KF---HILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYD 239 (258)
T ss_dssp SC---CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred cc---cccHHHHHHHHHHHHHHHhccCccCCCcChHHHHHHHHHHhccccccccccCCceeehHHHHHHHHHHHHHHHHH
Confidence 11 2577 999999999999999999999999999999999862 22345 6699999999999999999999
Q ss_pred HHhccCC
Q 023107 276 IVIRAIP 282 (287)
Q Consensus 276 ~~~~~~~ 282 (287)
+++.++.
T Consensus 240 ~~~~~~~ 246 (258)
T 3c02_A 240 KVICPLV 246 (258)
T ss_dssp HTHHHHH
T ss_pred HHhcccC
Confidence 9987643
No 14
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=99.54 E-value=2e-14 Score=125.85 Aligned_cols=99 Identities=24% Similarity=0.290 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHH-----
Q 023107 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLL----- 123 (287)
Q Consensus 49 ~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l----- 123 (287)
+.++.++.|+++||+|++.+++.....+. .. ...++.+|+.++...+..+++||+|+|||++++..+
T Consensus 142 ~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~------~~--~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~ 213 (246)
T 2f2b_A 142 SYWQAMLAEVVGTFLLMITIMGIAVDERA------PK--GFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIF 213 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSTTS------CT--TCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHheeeEEecCCCC------CC--ceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHc
Confidence 46889999999999999998765432111 11 125788899999999999999999999999999998
Q ss_pred hcCCCchhHHHHHHHhhHhHhHhhHHHHhhcC
Q 023107 124 ARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEG 155 (287)
Q Consensus 124 ~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~ 155 (287)
.++..|.+.|+||++|++|+++|+++.+.+.+
T Consensus 214 g~~~~w~~~~vy~vap~~Ga~laa~~y~~l~~ 245 (246)
T 2f2b_A 214 AGTDLWNYYSIYVIGPIVGAVLAALTYQYLTS 245 (246)
T ss_dssp HCCCCGGGTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcceEEEeeeHHHHHHHHHHHHHHHHcC
Confidence 34667889999999999999999998877654
No 15
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=99.49 E-value=3.4e-14 Score=125.44 Aligned_cols=103 Identities=18% Similarity=0.140 Sum_probs=85.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCC
Q 023107 175 KGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWD 254 (287)
Q Consensus 175 ~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~ 254 (287)
..+.++.|+++|++|+++.++........ . ......++.+|+++.+.+++.+++||+++|||++++..+. +...|.
T Consensus 9 ~~~~~laEfiGT~~Lv~~g~g~~~~~~~~-~-~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla~~~~--g~~~~~ 84 (263)
T 2b6o_A 9 FWRAIFAEFFATLFYVFFGLGASLRWAPG-P-LHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVG--SQMSLL 84 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCSS-S-CHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHHHHHT--TCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC-C-cchHHHHHHHHHHHHHHHHHhhccCcCeeChHHHHHHHHh--cCCCHH
Confidence 34679999999999999988865432111 1 1112368899999999999999999999999999999996 347899
Q ss_pred cceehhhhhHHHHHHHHHHHHHHhccC
Q 023107 255 DHWIFWVGPFIGAALAAVYHQIVIRAI 281 (287)
Q Consensus 255 ~~wvy~v~p~~Ga~~a~~~~~~~~~~~ 281 (287)
+.|+||++|++|+++|+.+.+.+++++
T Consensus 85 ~~~~Yi~AQ~lGa~~ga~l~~~~~~~~ 111 (263)
T 2b6o_A 85 RAICYVVAQLLGAVAGAAVLYSVTPPA 111 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 999999999999999999999998754
No 16
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=99.42 E-value=2.4e-13 Score=119.18 Aligned_cols=105 Identities=23% Similarity=0.234 Sum_probs=83.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhccccccCCC-CCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCC
Q 023107 174 TKGDGLGAEIIGTFVLVYTVFSATDAKRNARD-SHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHA 252 (287)
Q Consensus 174 s~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~-~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~ 252 (287)
+..+.++.||++|++|++..++........+. .......++.+|+++.+.+++.+.+||+++|||++++..+. +...
T Consensus 28 ~l~r~~laEflGT~lLv~~G~G~~~~~~~~~~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~--g~~~ 105 (256)
T 3llq_A 28 VMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVA--GRFP 105 (256)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHT--TSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHHHHHh--cCCC
Confidence 45688999999999999987764321111111 11123357899999999999999999999999999999995 3478
Q ss_pred CCcceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 253 WDDHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 253 ~~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
|.+...|+++|++|+++|+.+.+.+++.
T Consensus 106 ~~~~~~YiiAQ~lGA~~ga~lv~~~~~~ 133 (256)
T 3llq_A 106 ASSLVPYVIAQVAGAIVAAAALYVIATG 133 (256)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999998888743
No 17
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=99.38 E-value=1.1e-12 Score=117.36 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=84.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhccccccC-CC-CCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCC
Q 023107 174 TKGDGLGAEIIGTFVLVYTVFSATDAKRNA-RD-SHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDH 251 (287)
Q Consensus 174 s~~~~~~~E~~~T~~l~~~v~~~~~~~~~~-~~-~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~ 251 (287)
+.++.++.||++|++|+++.++........ .. ........+.+|+++.+.+++++.+||+|+|||++++..+. +..
T Consensus 11 ~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~~--g~~ 88 (301)
T 2zz9_A 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCT--RKI 88 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHHHHT--SSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHHHHHHHHh--cCC
Confidence 346789999999999999888754321111 11 11113468899999999999999999999999999999995 447
Q ss_pred CCCcceehhhhhHHHHHHHHHHHHHHhccC
Q 023107 252 AWDDHWIFWVGPFIGAALAAVYHQIVIRAI 281 (287)
Q Consensus 252 ~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~ 281 (287)
.|.....|+++|++|+++|+.+.+.+++++
T Consensus 89 ~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~ 118 (301)
T 2zz9_A 89 SIAKSVFYITAQCLGAIIGAGILYLVTPPS 118 (301)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 899999999999999999999998887653
No 18
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=99.38 E-value=3.9e-13 Score=118.75 Aligned_cols=102 Identities=20% Similarity=0.181 Sum_probs=83.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCC
Q 023107 175 KGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWD 254 (287)
Q Consensus 175 ~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~ 254 (287)
..+.++.||++|++|++..++......... ......++.+|+++.+.+++.+.+||+|+|||++++..+. +...|.
T Consensus 11 ~~r~~laEfiGT~~lv~~g~g~~~~~~~~~--~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~--g~~~~~ 86 (266)
T 3d9s_A 11 FLKAVFAEFLATLIFVFFGLGSALKWPSAL--PTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVG--NQISLL 86 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCSSSC--CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHT--SSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--ccHHHHHHHHHHHHHHHHHHHcccCcceECHHHHHHHHHh--cCCCHH
Confidence 346799999999999999887654322111 1123468899999999999999999999999999999995 346899
Q ss_pred cceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 255 DHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 255 ~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
+.+.|+++|++|+++|+.+.+.+++.
T Consensus 87 ~~~~Yi~AQ~lGA~~ga~l~~~~~~~ 112 (266)
T 3d9s_A 87 RAFFYVAAQLVGAIAGAGILYGVAPL 112 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999988754
No 19
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.37 E-value=3.3e-13 Score=118.85 Aligned_cols=104 Identities=22% Similarity=0.218 Sum_probs=82.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCC
Q 023107 175 KGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWD 254 (287)
Q Consensus 175 ~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~ 254 (287)
..+.++.||++|++|++..++........+........++.+|+++.+.+++.+.+||+|+|||++++..+. +...|.
T Consensus 9 ~~~~~~aEflGT~~lv~~G~g~~~~~~~~~~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~--g~~~~~ 86 (258)
T 3c02_A 9 YVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSI--NKFDLK 86 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHT--TSSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHh--CCCcHH
Confidence 346789999999999998665332111111111123357889999999999999999999999999999995 347899
Q ss_pred cceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 255 DHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 255 ~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
+...|+++|++|+++|+.+.+.++++
T Consensus 87 ~~~~Yi~AQ~lGa~~ga~l~~~~~~~ 112 (258)
T 3c02_A 87 KIPVYFFAQLLGAFVGTSTVYGLYHG 112 (258)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 99999999999999999988888765
No 20
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=99.36 E-value=6.5e-13 Score=114.49 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=82.4
Q ss_pred CCchhHHHHHHHHHHHHHHHhcccccc-CC-CCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCC
Q 023107 176 GDGLGAEIIGTFVLVYTVFSATDAKRN-AR-DSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAW 253 (287)
Q Consensus 176 ~~~~~~E~~~T~~l~~~v~~~~~~~~~-~~-~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~ 253 (287)
++.++.||++|++|++..++....... .+ .........+.+|+++.+.+++.+.+||+|+|||.+++..+. ++..|
T Consensus 4 ~r~~~aEfiGT~~lv~~g~g~~~~~~~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~--g~~~~ 81 (223)
T 3gd8_A 4 WKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCT--RKISI 81 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHT--TSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHc--CCCCH
Confidence 467899999999999988875432111 11 111123568889999999999999999999999999999985 34689
Q ss_pred CcceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 254 DDHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 254 ~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
.+...|+++|++|+++|+.+.+.++++
T Consensus 82 ~~~~~Yi~AQ~lGA~~ga~lv~~~~~~ 108 (223)
T 3gd8_A 82 AKSVFYIAAQCLGAIIGAGILYLVTPP 108 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999988887654
No 21
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.36 E-value=5.1e-13 Score=116.02 Aligned_cols=104 Identities=20% Similarity=0.187 Sum_probs=82.5
Q ss_pred CCchhHHHHHHHHHHHHHHHhccccccCCC-CCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCC
Q 023107 176 GDGLGAEIIGTFVLVYTVFSATDAKRNARD-SHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWD 254 (287)
Q Consensus 176 ~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~-~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~ 254 (287)
.+.++.||++|++|++..++...-+...++ .......++.+|+++.+.+++.+.+||+|+|||++++..+. ++..|.
T Consensus 5 ~r~~~aEf~GT~~lv~~g~g~~~~~~~~~~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~--g~~~~~ 82 (234)
T 2o9g_A 5 FRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAG--GRFPAK 82 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHT--TSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHHHh--CCCCHH
Confidence 467899999999999987764321111111 11122357899999999999999999999999999999995 347899
Q ss_pred cceehhhhhHHHHHHHHHHHHHHhccC
Q 023107 255 DHWIFWVGPFIGAALAAVYHQIVIRAI 281 (287)
Q Consensus 255 ~~wvy~v~p~~Ga~~a~~~~~~~~~~~ 281 (287)
+...|+++|++|+++|+.+.+.++++.
T Consensus 83 ~~~~Yi~aQ~lGa~~ga~l~~~~~~~~ 109 (234)
T 2o9g_A 83 EVVGYVIAQVVGGIVAAALLYLIASGK 109 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999988887653
No 22
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=99.35 E-value=6.2e-13 Score=118.51 Aligned_cols=104 Identities=20% Similarity=0.132 Sum_probs=81.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCC
Q 023107 175 KGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWD 254 (287)
Q Consensus 175 ~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~ 254 (287)
..+.++.||++|++|++..++.................++.+|+++.+.+++.+.+||+|+|||++++..+.. ...|.
T Consensus 7 ~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g--~~~~~ 84 (281)
T 1ldf_A 7 LKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFA--CFDKR 84 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHS--CCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHHHHcC--CCCHH
Confidence 4567999999999999977653221111111111233688899999999999999999999999999999963 47899
Q ss_pred cceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 255 DHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 255 ~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
+...|+++|++|+++|+.+.+.++++
T Consensus 85 ~~~~Yi~AQ~lGA~~ga~l~~~~~~~ 110 (281)
T 1ldf_A 85 KVIPFIVSQVAGAFCAAALVYGLYYN 110 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999988877654
No 23
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=99.35 E-value=1e-12 Score=116.46 Aligned_cols=104 Identities=13% Similarity=0.211 Sum_probs=82.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHhccccc------cCCCC-CCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHh
Q 023107 175 KGDGLGAEIIGTFVLVYTVFSATDAKR------NARDS-HVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIF 247 (287)
Q Consensus 175 ~~~~~~~E~~~T~~l~~~v~~~~~~~~------~~~~~-~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~ 247 (287)
.++.++.||++|++|++..++...... ..... ......++.+|+++.+.+++++.+||+|+|||++++..+.
T Consensus 10 ~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~- 88 (271)
T 1j4n_A 10 FWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLS- 88 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHHHHHHHHHc-
Confidence 346799999999999998776432110 00110 0123468899999999999999999999999999999995
Q ss_pred CCCCCCCcceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 248 NKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 248 ~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
+...|.+...|+++|++|+++|+.+.+.++.+
T Consensus 89 -g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~ 120 (271)
T 1j4n_A 89 -CQISVLRAIMYIIAQCVGAIVATAILSGITSS 120 (271)
T ss_dssp -TSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34789999999999999999999988888754
No 24
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=99.34 E-value=5.6e-13 Score=120.51 Aligned_cols=104 Identities=16% Similarity=0.153 Sum_probs=82.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcccccc--CCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCC
Q 023107 175 KGDGLGAEIIGTFVLVYTVFSATDAKRN--ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHA 252 (287)
Q Consensus 175 ~~~~~~~E~~~T~~l~~~v~~~~~~~~~--~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~ 252 (287)
.++.++.||++|++|++..++....... ...........+.+|+++.+.+++++.+||+++|||++++..+. +...
T Consensus 51 l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal~l~--G~~~ 128 (340)
T 3iyz_A 51 FWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCT--RKIS 128 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHHHHc--CCCC
Confidence 4678899999999999987764332111 11111123568899999999999999999999999999999985 4478
Q ss_pred CCcceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 253 WDDHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 253 ~~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
|.....|+++|++|+++|+.+.+.++++
T Consensus 129 ~~~~~~YiiAQ~lGA~~GA~lv~~~~~~ 156 (340)
T 3iyz_A 129 IAKSVFYITAQCLGAIIGAGILYLVTPP 156 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999999999999999999988887654
No 25
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=99.32 E-value=8.7e-13 Score=118.33 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=82.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhccccc--cCC-CCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCC
Q 023107 174 TKGDGLGAEIIGTFVLVYTVFSATDAKR--NAR-DSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKD 250 (287)
Q Consensus 174 s~~~~~~~E~~~T~~l~~~v~~~~~~~~--~~~-~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~ 250 (287)
+..+.++.||++|++|++..++...... ... ........++.+|+++++.+++++.+||+++|||++++..+. +.
T Consensus 59 ~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~l~--g~ 136 (304)
T 3cn5_A 59 SFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLA--RK 136 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHT--TS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEeeccCCCccCcHHHHHHHHh--CC
Confidence 3457889999999999998775432111 111 111112357889999999999999999999999999999995 34
Q ss_pred CCCCcceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 251 HAWDDHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 251 ~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
..|.+...|+++|++|+++|+.+.+.++++
T Consensus 137 ~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~ 166 (304)
T 3cn5_A 137 VELLRALVYMIAQCLGAICGVGLVKAFMKG 166 (304)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 789999999999999999999998888765
No 26
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=99.30 E-value=2.1e-12 Score=114.76 Aligned_cols=104 Identities=16% Similarity=0.255 Sum_probs=80.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHhc---cccc--c-CCCC-CCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHh
Q 023107 175 KGDGLGAEIIGTFVLVYTVFSAT---DAKR--N-ARDS-HVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIF 247 (287)
Q Consensus 175 ~~~~~~~E~~~T~~l~~~v~~~~---~~~~--~-~~~~-~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~ 247 (287)
.++.++.||++|++|++..++.. .... + .... ......++.+|+++.+.+++++.+||+|+|||++++..+.
T Consensus 44 ~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~~- 122 (279)
T 2w2e_A 44 HFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLA- 122 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCccHHHHHHHHHHHHHHHHHHHhhcCccccChHHHHHHHHc-
Confidence 34568999999999998766531 1110 0 0000 0012357889999999999999999999999999999995
Q ss_pred CCCCCCCcceehhhhhHHHHHHHHHHHHHHhcc
Q 023107 248 NKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRA 280 (287)
Q Consensus 248 ~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 280 (287)
+...|.+...|+++|++|+++|+.+.+.+++.
T Consensus 123 -g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~ 154 (279)
T 2w2e_A 123 -RAIPPFRGILMAFTQIVAGMAAAGAASAMTPG 154 (279)
T ss_dssp -TSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34789999999999999999999998888754
No 27
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=91.21 E-value=3.7 Score=35.90 Aligned_cols=108 Identities=12% Similarity=0.081 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcC--CcchhhcCC-
Q 023107 88 QGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEG--SKNYERLGG- 164 (287)
Q Consensus 88 ~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~--~~~~~~~~~- 164 (287)
+.-++.+.+.+.+.++.-+..-=+ |--.+ ...+.+|.+|.+.+--|.-=.+|=++|++++-++.. .. +...++
T Consensus 69 ll~g~~F~vGL~lVvl~G~ELFTg--n~l~~-~a~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~-~~~~~~~ 144 (285)
T 3kcu_A 69 LVGGICFSLGLILCVVCGADLFTS--TVLIV-VAKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGE-YMTANGQ 144 (285)
T ss_dssp HHHHHHHTHHHHHHHHHTCCCTTT--THHHH-HHHTTTCCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHTG-GGTTTTH
T ss_pred HHHHHHHHHHHHHHHHhCcccccc--chHHH-HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-cccCchH
Confidence 334555666665566655553222 42233 345678888877765555555555555555443311 11 000000
Q ss_pred -C--c---ccccCCCCCCCchhHHHHHHHHHHHHHHHhccc
Q 023107 165 -G--A---NVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDA 199 (287)
Q Consensus 165 -~--~---~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~ 199 (287)
+ . ..-..+.+..+.|+-=++|.++..+.++.....
T Consensus 145 ~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~~~a 185 (285)
T 3kcu_A 145 WGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSYSG 185 (285)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 0 000123455677788888888888888775443
No 28
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=83.34 E-value=12 Score=32.58 Aligned_cols=106 Identities=14% Similarity=0.132 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhhhhccC-cCCCccChHHHHHHHHhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcC-CcchhhcCCC-
Q 023107 89 GIAWAFGGMIFALVYCTAG-ISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEG-SKNYERLGGG- 165 (287)
Q Consensus 89 ~~~~~~g~~v~~~i~~~~~-iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~-~~~~~~~~~~- 165 (287)
.-++.+.+.+.+.++.-+. .+|--+ .+ ...+.+|.+|.+.+--|.-=.+|=++|++++-++.. ...+. ...+
T Consensus 69 l~g~~F~vGL~lVvl~g~ELFTgn~l---~~-~~~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~-~~~~~ 143 (280)
T 3kly_A 69 LGGLAFSLGLILVVITGGELFTSSVL---IL-VAKASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFM-EDGGQ 143 (280)
T ss_dssp HHHHHHHHHHHHHHHHTCCCTTTTCC---CC-SSSSSSSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG-TTTTH
T ss_pred HHHHHHHHHHHHHHHccccccccchH---HH-HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc-CCchH
Confidence 3455666666556665554 344333 22 234578888888877777666676666666544321 00010 0000
Q ss_pred ----ccc---ccCCCCCCCchhHHHHHHHHHHHHHHHhccc
Q 023107 166 ----ANV---VAHGYTKGDGLGAEIIGTFVLVYTVFSATDA 199 (287)
Q Consensus 166 ----~~~---~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~ 199 (287)
... -..+.+..+.|+-=++|.++..+.++.....
T Consensus 144 ~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~~~a 184 (280)
T 3kly_A 144 LGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSA 184 (280)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 000 0123355677778888888888888775443
No 29
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=80.56 E-value=10 Score=32.77 Aligned_cols=182 Identities=10% Similarity=0.061 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHHHhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcC-Ccchhh--cCC
Q 023107 88 QGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEG-SKNYER--LGG 164 (287)
Q Consensus 88 ~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~-~~~~~~--~~~ 164 (287)
+.-++.+.+.+.+.++.-+..-=+ |-.......+.++.+|.+.+--|.-=.+|=++|++++-.+.. ...++. ...
T Consensus 65 ll~g~~F~~Gl~lVvl~g~eLfTg--n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~sg~~~~~~~~~ 142 (268)
T 3tds_E 65 IVMGLSFAIALSLVIMTGTELFTG--NNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLVDKGPVAE 142 (268)
T ss_dssp HHHHHTCTHHHHHHHHHTCCCHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccc--chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcHHHH
Confidence 334455555555555543332111 433333456788999988877777666777777666544331 110100 000
Q ss_pred Ccccc---cCCCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhH
Q 023107 165 GANVV---AHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSL 241 (287)
Q Consensus 165 ~~~~~---~~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~l 241 (287)
..... ..+.+..+.|+-=++|.++..+.++.....|.. .-+-+.+-+-+++.+..+ ..=...|- --+
T Consensus 143 ~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~~~~k~~-------~gKi~~i~~pi~~Fv~~G--fEH~VANm-~~~ 212 (268)
T 3tds_E 143 FFANTAASKASMPFTALFFRGILCNILVCVSVLCSFRTNSD-------TAKIIMIFLCLFAIITSG--FEHSVANM-TIY 212 (268)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHSCSCH-------HHHHHHHHHHHHHHHHHT--CCCHHHHH-HHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcCch-------hhHHHHHHHHHHHHHHcc--chHHHHHH-HHH
Confidence 00000 112345677777788888888877765432221 112233333333222222 11112232 112
Q ss_pred HHHHHhCC--CCCCCcc---ee-hhhhhHHHH-HHHHHHHHHHhccC
Q 023107 242 GAAIIFNK--DHAWDDH---WI-FWVGPFIGA-ALAAVYHQIVIRAI 281 (287)
Q Consensus 242 g~~i~~~~--~~~~~~~---wv-y~v~p~~Ga-~~a~~~~~~~~~~~ 281 (287)
...++.+. +..|.+. ++ =.+|-++|+ ++-++.|+++++.+
T Consensus 213 ~~~~~~~~~~~~t~~~~~~nlipvtlGNiiGG~~fvgl~y~~~~~~~ 259 (268)
T 3tds_E 213 SVSLFSPTISTVTIGGAIYNLVAVTLGNIVGGALFMGLGTYILGKEK 259 (268)
T ss_dssp HHHHHSSSCCSCCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHCCC
T ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 23333331 3344332 12 246777766 46677888887653
No 30
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=57.33 E-value=74 Score=27.16 Aligned_cols=183 Identities=9% Similarity=-0.014 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHhhhhccCc-CCCccChHHHHHHHHhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCc-chhhcCCC
Q 023107 88 QGIAWAFGGMIFALVYCTAGI-SGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSK-NYERLGGG 165 (287)
Q Consensus 88 ~~~~~~~g~~v~~~i~~~~~i-SGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~-~~~~~~~~ 165 (287)
+.-++.+++.+.+.++.-+.. +| |-.......+.|+.+|.+.+--|.-=.+|=++|++++-.+.... ........
T Consensus 59 ll~g~~F~vGl~lVvl~g~eLfTg---n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~~g~~~~~~~~ 135 (261)
T 4fc4_A 59 LVMGATFGIALTLVIIAGSELFTG---HTMFLTLGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDT 135 (261)
T ss_dssp HHHHHHTTHHHHHHHHTCCCCHHH---HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSSCTT
T ss_pred HHHHHHHHHHHHHHHHcCCccccc---chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHH
Confidence 334555555555555543332 22 44433345667889988888777666666666665543332110 00000000
Q ss_pred cc--ccc---CCCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhh
Q 023107 166 AN--VVA---HGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS 240 (287)
Q Consensus 166 ~~--~~~---~~~s~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~ 240 (287)
.. ... .+.+..+.|+-=++|.++..+.++.....+.. -+-+.+-+-+++-+..+ ..=...|- --
T Consensus 136 ~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~~~~~~~--------gKi~~i~~pi~~Fv~~G--fEH~VANm-~~ 204 (261)
T 4fc4_A 136 SIVHSVALAKTTAPATVLFFKGALCNWLVCLAIWMAIRTEGT--------AKFLAIWWCLLAFIASG--YEHSVANM-TL 204 (261)
T ss_dssp SHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCHH--------HHHHHHHHHHHHHHHHT--CCCHHHHH-HH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhccch--------hhhhHHHHHHHHHHHcc--chHHHHhH-HH
Confidence 00 010 12244566777778888887777764332111 12223323333222221 21112232 12
Q ss_pred HHHHHHhCC--CCCCCcce---e-hhhhhHHHH-HHHHHHHHHHhccCCCc
Q 023107 241 LGAAIIFNK--DHAWDDHW---I-FWVGPFIGA-ALAAVYHQIVIRAIPFK 284 (287)
Q Consensus 241 lg~~i~~~~--~~~~~~~w---v-y~v~p~~Ga-~~a~~~~~~~~~~~~~~ 284 (287)
+...++.+. +..|.+.+ + =.+|-++|+ ++-++.|++.++.+..|
T Consensus 205 ~~~~~~~g~~~~~t~~~~~~nlipvtlGNiiGG~~fvgl~y~~~~~~~~~~ 255 (261)
T 4fc4_A 205 FALSWFGHHSDAYTLAGIGHNLLWVTLGNTLSGVVFMGLGYWYATPKSELE 255 (261)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHC------
T ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 233333331 13443321 2 246777766 45678888887665443
No 31
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=53.59 E-value=2.3 Score=38.07 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=18.7
Q ss_pred hccCcCCCccChHHHHHHHHhcC
Q 023107 104 CTAGISGGHINPAVTFGLLLARK 126 (287)
Q Consensus 104 ~~~~iSGah~NPavTla~~l~g~ 126 (287)
+++.-||||++||++++-.+..+
T Consensus 7 i~~GGTgGHi~palala~~L~~~ 29 (365)
T 3s2u_A 7 IMAGGTGGHVFPALACAREFQAR 29 (365)
T ss_dssp EECCSSHHHHHHHHHHHHHHHHT
T ss_pred EEcCCCHHHHHHHHHHHHHHHhC
Confidence 34555889999999999999754
Done!