BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023108
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/284 (72%), Positives = 229/284 (80%), Gaps = 6/284 (2%)
Query: 1 MAKDIEVGREGEFHDKDYHDPPPAPLIGAEELTRWSFYRAIIAEFIATLLFLYITVLTVI 60
M+K++ + H KDY DPPPAP EL WSF+RA IAEFIATLLFLYITV TVI
Sbjct: 1 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 60
Query: 61 GHKSQTDAKHXXXXXXXXXXXXIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 120
GH +T IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 61 GHSKET------VVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 114
Query: 121 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFV 180
SL+RA++YM+AQCLGAICG GLVKAF K Y ++GGGAN +A GY+ G LGAEIIGTFV
Sbjct: 115 SLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 174
Query: 181 LVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYN 240
LVYTVFSATDPKR ARD HVP+LAPL IGFAVFMVHLATIP+TGTGINPARSFG AVI+N
Sbjct: 175 LVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFN 234
Query: 241 KDKAWDDQWIFWVGPFIGAAIAALYHQFILRASASKALGSRRSS 284
+K WDDQWIFWVGPFIGAA+AA YHQ++LRA+A KALGS RS+
Sbjct: 235 SNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGSFRSN 278
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 415 bits (1066), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/284 (72%), Positives = 229/284 (80%), Gaps = 6/284 (2%)
Query: 1 MAKDIEVGREGEFHDKDYHDPPPAPLIGAEELTRWSFYRAIIAEFIATLLFLYITVLTVI 60
M+K++ + H KDY DPPPAP EL WSF+RA IAEFIATLLFLYITV TVI
Sbjct: 1 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 60
Query: 61 GHKSQTDAKHXXXXXXXXXXXXIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 120
GH +T IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 61 GHSKET------VVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 114
Query: 121 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFV 180
SL+RA++YM+AQCLGAICG GLVKAF K Y ++GGGAN +A GY+ G LGAEIIGTFV
Sbjct: 115 SLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 174
Query: 181 LVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYN 240
LVYTVFSATDPKR ARD HVP+LAPL IGFAVFMVHLATIP+TGTGINPARSFG AVI+N
Sbjct: 175 LVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFN 234
Query: 241 KDKAWDDQWIFWVGPFIGAAIAALYHQFILRASASKALGSRRSS 284
+K WDDQWIFWVGPFIGAA+AA YHQ++LRA+A KALGS RS+
Sbjct: 235 SNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGSFRSN 278
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 413 bits (1061), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/284 (72%), Positives = 228/284 (80%), Gaps = 6/284 (2%)
Query: 1 MAKDIEVGREGEFHDKDYHDPPPAPLIGAEELTRWSFYRAIIAEFIATLLFLYITVLTVI 60
M+K++ + H KDY DPPPAP EL WSF+RA IAEFIATLLFLYITV TVI
Sbjct: 20 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 79
Query: 61 GHKSQTDAKHXXXXXXXXXXXXIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 120
GH +T IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 80 GHSKET------VVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 133
Query: 121 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFV 180
L+RA++YM+AQCLGAICG GLVKAF K Y ++GGGAN +A GY+ G LGAEIIGTFV
Sbjct: 134 ELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 193
Query: 181 LVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYN 240
LVYTVFSATDPKR ARD HVP+LAPL IGFAVFMVHLATIP+TGTGINPARSFG AVI+N
Sbjct: 194 LVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFN 253
Query: 241 KDKAWDDQWIFWVGPFIGAAIAALYHQFILRASASKALGSRRSS 284
+K WDDQWIFWVGPFIGAA+AA YHQ++LRA+A KALGS RS+
Sbjct: 254 SNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGSFRSN 297
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 413 bits (1061), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/284 (72%), Positives = 228/284 (80%), Gaps = 6/284 (2%)
Query: 1 MAKDIEVGREGEFHDKDYHDPPPAPLIGAEELTRWSFYRAIIAEFIATLLFLYITVLTVI 60
M+K++ + H KDY DPPPAP EL WSF+RA IAEFIATLLFLYITV TVI
Sbjct: 24 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 83
Query: 61 GHKSQTDAKHXXXXXXXXXXXXIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 120
GH +T IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 84 GHSKET------VVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 137
Query: 121 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFV 180
SL+RA++YM+AQCLGAICG GLVKAF K Y ++GGGAN +A GY+ G LGAEIIGTFV
Sbjct: 138 SLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 197
Query: 181 LVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYN 240
LVYTVFSATDPKR ARD HVP+LAPL IGFAVFMVHLATIP+TGTGINPARSFG AVI+N
Sbjct: 198 LVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFN 257
Query: 241 KDKAWDDQWIFWVGPFIGAAIAALYHQFILRASASKALGSRRSS 284
+K WDDQWIFWVGPFIGAA+AA YHQ++LRA+A KALG RS+
Sbjct: 258 SNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGEFRSN 301
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/284 (71%), Positives = 227/284 (79%), Gaps = 6/284 (2%)
Query: 1 MAKDIEVGREGEFHDKDYHDPPPAPLIGAEELTRWSFYRAIIAEFIATLLFLYITVLTVI 60
M+K++ + H KDY DPPPAP EL WSF+RA IAEFIATLLFLYITV TVI
Sbjct: 24 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 83
Query: 61 GHKSQTDAKHXXXXXXXXXXXXIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 120
GH +T IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 84 GHSKET------VVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 137
Query: 121 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFV 180
L+RA++YM+AQCLGAICG GLVKAF K Y ++GGGAN +A GY+ G LGAEIIGTFV
Sbjct: 138 ELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 197
Query: 181 LVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYN 240
LVYTVFSATDPKR ARD HVP+LAPL IGFAVFMVHLATIP+TGTGINPARSFG AVI+N
Sbjct: 198 LVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFN 257
Query: 241 KDKAWDDQWIFWVGPFIGAAIAALYHQFILRASASKALGSRRSS 284
+K WDDQWIFWVGPFIGAA+AA YHQ++LRA+A KALG RS+
Sbjct: 258 SNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGEFRSN 301
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 184 bits (468), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/248 (42%), Positives = 145/248 (58%), Gaps = 12/248 (4%)
Query: 29 AEELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHXXXXXXXXXXXXIAWAFG 88
A E + F+RA++AEF+AT LF++I++ + +G K ++ AFG
Sbjct: 2 ASEFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVK----VSLAFG 57
Query: 89 GMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQK 148
I L ISG H+NPAVT GL L+ ++S+ RA+MY++AQC+GAI ++
Sbjct: 58 LSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITS 117
Query: 149 SYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSI 208
S T G N+LADG ++G GLG EIIGT LV V + TD +R+ APL+I
Sbjct: 118 S-LTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----APLAI 172
Query: 209 GFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQF 268
G +V + HL I TG GINPARSFG AVI + + + WIFWVGPFIG A+A L + F
Sbjct: 173 GLSVALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDF 229
Query: 269 ILRASASK 276
IL +S
Sbjct: 230 ILAPRSSD 237
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 181 bits (458), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 104/248 (41%), Positives = 144/248 (58%), Gaps = 10/248 (4%)
Query: 29 AEELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHXXXXXXXXXXXXIAWAFG 88
A E + F+RA++AEF+A +LF++I++ + +G K ++ AFG
Sbjct: 2 ASEFKKKLFWRAVVAEFLAMILFIFISIGSALGF--HYPIKSNQTTGAVQDNVKVSLAFG 59
Query: 89 GMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQK 148
I L ISG H+NPAVT GL L+ ++S++RA+MY++AQC+GAI ++
Sbjct: 60 LSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITS 119
Query: 149 SYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSI 208
S G N LA G ++G GLG EIIGT LV V + TD +R+ PL+I
Sbjct: 120 SLPDN-SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----GPLAI 174
Query: 209 GFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQF 268
GF+V + HL I TG GINPARSFG +VI + + D WIFWVGPFIGAA+A L + F
Sbjct: 175 GFSVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDF 231
Query: 269 ILRASASK 276
IL +S
Sbjct: 232 ILAPRSSD 239
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 134/235 (57%), Gaps = 17/235 (7%)
Query: 36 SFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHXXXXXXXXXXXXIAWAFGGMIFVLV 95
+F++A+ AEF+A L+F+ ++V + I + I+ FG I +V
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENP-------LPVDMVLISLCFGLSIATMV 63
Query: 96 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYG 155
C ISGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ + + + G
Sbjct: 64 QCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVG 121
Query: 156 G-GANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFM 214
G G + + G GL E+I TF LV+T+F++ D KR V L+IGF+V +
Sbjct: 122 GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSV----ALAIGFSVAI 177
Query: 215 VHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFI 269
HL I TG +NPARSFGPAVI W++ WI+WVGP IGA +A ++++
Sbjct: 178 GHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 229
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 134/235 (57%), Gaps = 17/235 (7%)
Query: 36 SFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHXXXXXXXXXXXXIAWAFGGMIFVLV 95
+F++A+ AEF+A L+F+ ++V + I + I+ FG I +V
Sbjct: 50 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENP-------LPVDMVLISLCFGLSIATMV 102
Query: 96 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYG 155
C ISGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ + + + G
Sbjct: 103 QCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVG 160
Query: 156 G-GANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFM 214
G G + + G GL E+I TF LV+T+F++ D KR V L+IGF+V +
Sbjct: 161 GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV----ALAIGFSVAI 216
Query: 215 VHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFI 269
HL I TG +NPARSFGPAVI W++ WI+WVGP IGA +A ++++
Sbjct: 217 GHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 268
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 134/235 (57%), Gaps = 17/235 (7%)
Query: 36 SFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHXXXXXXXXXXXXIAWAFGGMIFVLV 95
+F++A+ AEF+A L+F+ ++V + I + I+ FG I +V
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENP-------LPVDMVLISLCFGLSIATMV 63
Query: 96 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYG 155
C ISGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ + + + G
Sbjct: 64 QCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVG 121
Query: 156 G-GANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFM 214
G G + + G GL E+I TF LV+T+F++ D KR V L+IGF+V +
Sbjct: 122 GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV----ALAIGFSVAI 177
Query: 215 VHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFI 269
HL I TG +NPARSFGPAVI W++ WI+WVGP IGA +A ++++
Sbjct: 178 GHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 229
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 145 bits (365), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 129/234 (55%), Gaps = 15/234 (6%)
Query: 36 SFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHXXXXXXXXXXXXIAWAFGGMIFVLV 95
+F++A+ AEF+A L+F+ +++ + I I+ FG I +V
Sbjct: 2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKP-------LPVDMVLISLCFGLSIATMV 54
Query: 96 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYG 155
C ISGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ G
Sbjct: 55 QCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG-G 113
Query: 156 GGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMV 215
G + + G GL E+I TF LV+T+F++ D KR + L+IGF+V +
Sbjct: 114 LGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSI----ALAIGFSVAIG 169
Query: 216 HLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFI 269
HL I TG +NPARSFGPAVI W++ WI+WVGP IGA +A ++++
Sbjct: 170 HLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 220
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 134 bits (336), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 135/263 (51%), Gaps = 26/263 (9%)
Query: 31 ELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHXXXXXXXXXXXXIAWAFGGM 90
EL SF+RAI AEF A+L +++ + + + H +A AFG
Sbjct: 3 ELRSASFWRAICAEFFASLFYVFFGLGASL--RWAPGPLHVLQ---------VALAFGLA 51
Query: 91 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSY 150
+ LV ISG H+NPAVTF + ++SL+RA+ YMVAQ LGA+ G ++ +
Sbjct: 52 LATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPP- 110
Query: 151 YTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGF 210
R N L G S G EI T V +F+ D +R R V L++GF
Sbjct: 111 AVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGF 166
Query: 211 AVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFIL 270
++ + HL + TG G+NPARSF PA++ + + + W++WVGP IGA + +L + F+L
Sbjct: 167 SLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223
Query: 271 ---RASASKAL----GSRRSSSN 286
S S+ L GSR S SN
Sbjct: 224 FPRLKSVSERLSILKGSRPSESN 246
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 132/242 (54%), Gaps = 20/242 (8%)
Query: 30 EELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHXXXXXXXXXXXXIAWAFGG 89
+E+ +F +A+ AEF+ATL+F++ + + + S IA AFG
Sbjct: 4 KEVCSVAFLKAVFAEFLATLIFVFFGLGSALKWPSALPT-----------ILQIALAFGL 52
Query: 90 MIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKS 149
I L +SGGHINPA+T L + ++SL+RA Y+ AQ +GAI G G++
Sbjct: 53 AIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV-AP 111
Query: 150 YYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAP-LSI 208
R N L + + G + E+I TF L +F++TD +R + PV +P LSI
Sbjct: 112 LNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS-----PVGSPALSI 166
Query: 209 GFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQF 268
G +V + HL I TG +NPARSFGPAV+ N+ W+FWVGP +GA +AA+ + +
Sbjct: 167 GLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFS--PAHWVFWVGPIVGAVLAAILYFY 224
Query: 269 IL 270
+L
Sbjct: 225 LL 226
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 135/263 (51%), Gaps = 26/263 (9%)
Query: 31 ELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHXXXXXXXXXXXXIAWAFGGM 90
EL SF+RAI AEF ATL +++ + + + H +A AFG
Sbjct: 3 ELRSASFWRAIFAEFFATLFYVFFGLGASL--RWAPGPLHVLQ---------VALAFGLA 51
Query: 91 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSY 150
+ LV ISG H+NPAVTF + ++SL+RA+ Y+VAQ LGA+ G ++ +
Sbjct: 52 LATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPP- 110
Query: 151 YTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGF 210
R N L G S G EI T V +F+ D +R R V L++GF
Sbjct: 111 AVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGF 166
Query: 211 AVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFIL 270
++ + HL + TG G+NPARSF PA++ + + + W++WVGP IGA + +L + F+L
Sbjct: 167 SLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223
Query: 271 ---RASASKAL----GSRRSSSN 286
S S+ L G+R S SN
Sbjct: 224 FPRLKSVSERLSILKGTRPSESN 246
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 123/235 (52%), Gaps = 19/235 (8%)
Query: 36 SFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHXXXXXXXXXXXXIAWAFGGMIFVLV 95
SF+RAI AEF ATL +++ + + + H +A AFG + LV
Sbjct: 4 SFWRAIFAEFFATLFYVFFGLGASL--RWAPGPLHVLQ---------VALAFGLALATLV 52
Query: 96 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYG 155
ISG H+NPAVTF + ++SL+RA+ Y+VAQ LGA+ G ++ + R
Sbjct: 53 QAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPP-AVRGN 111
Query: 156 GGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMV 215
N L G S G EI T V +F+ D +R R V L++GF++ +
Sbjct: 112 LALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLG 167
Query: 216 HLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFIL 270
HL + TG G+NPARSF PA++ + + + W++WVGP IGA + +L + F+L
Sbjct: 168 HLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 219
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 123/235 (52%), Gaps = 19/235 (8%)
Query: 36 SFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHXXXXXXXXXXXXIAWAFGGMIFVLV 95
SF+RAI AEF ATL +++ + + + H +A AFG + LV
Sbjct: 2 SFWRAIFAEFFATLFYVFFGLGASL--RWAPGPLHVLQ---------VALAFGLALATLV 50
Query: 96 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYG 155
ISG H+NPAVTF + ++SL+RA+ Y+VAQ LGA+ G ++ + R
Sbjct: 51 QAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPP-AVRGN 109
Query: 156 GGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMV 215
N L G S G EI T V +F+ D +R R V L++GF++ +
Sbjct: 110 LALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLG 165
Query: 216 HLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFIL 270
HL + TG G+NPARSF PA++ + + + W++WVGP IGA + +L + F+L
Sbjct: 166 HLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 217
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 106/237 (44%), Gaps = 21/237 (8%)
Query: 34 RWSF--------YRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHXXXXXXXXXXXXIAW 85
RW F + A+ EF+ T LFL+ VI + + I++
Sbjct: 33 RWGFGSDSVRNHFIAMSGEFVGTFLFLWSAF--VIAQIANQAPETPDGGSNPAQLIMISF 90
Query: 86 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKA 145
FG + V V+ T +SGG++NPAVT L LAR + R ++ Q + + G A
Sbjct: 91 GFGFGVMVGVFITYRVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASA 150
Query: 146 FQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAP 205
AN L G S GL E GT +L TV K +A AP
Sbjct: 151 MTPGEIAF----ANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHRAT-----WFAP 201
Query: 206 LSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIA 262
IG A+ + HL I TG G+NPARSFGPAV + WI+W+GP +GA +A
Sbjct: 202 FVIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFP--NYHWIYWLGPILGAFLA 256
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 112/246 (45%), Gaps = 17/246 (6%)
Query: 36 SFYRAIIAEFIATLLFLY-------ITVLTVIGHKSQTDAKHXXXXXXXXXX-XXIAWAF 87
S + IAEFI T + ++ +T++ G S I AF
Sbjct: 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAF 62
Query: 88 GGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQ 147
G I +Y ISG HINPAVT GL+ +K V Y++AQ LGA G +
Sbjct: 63 GFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCA 122
Query: 148 KSYYTRYGG-GANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPL 206
GG GA G S + AE++GTF+L+ T+ +R + A +
Sbjct: 123 GIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKG-----FAGI 177
Query: 207 SIGFAVFMVHLATIPVTGTGINPARSFGP---AVIYNKDKAWDDQWIFWVGPFIGAAIAA 263
IG V + ++G+ +NPAR+FGP +I+ W+ I+ +GP +GA +AA
Sbjct: 178 IIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAA 237
Query: 264 LYHQFI 269
L +Q++
Sbjct: 238 LTYQYL 243
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 96/188 (51%), Gaps = 13/188 (6%)
Query: 83 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGL 142
+A AFG + + Y GISGGH NPAV+ GL +A + V Y++AQ GAI
Sbjct: 67 VALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAA 126
Query: 143 --VKAFQKSYYTRYGGGANELAD----GYSTGAGLGAEIIGTFVLVYTVFSATDPKRKAR 196
V A K+ G +N + GYS + L EII T + + +T + A
Sbjct: 127 LYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAG 186
Query: 197 DPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPF 256
AP++IG A+ ++HL +IPVT T +NPARS G A ++ A W+FW+ P
Sbjct: 187 ------FAPIAIGLALTLIHLISIPVTNTSVNPARSTGQA-LFVGGWALQQLWLFWLAPI 239
Query: 257 IGAAIAAL 264
+G A A+
Sbjct: 240 VGGAAGAV 247
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 85/179 (47%), Gaps = 17/179 (9%)
Query: 83 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGL 142
+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G I L
Sbjct: 42 VALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAAL 101
Query: 143 VKAFQKSYYTRYGGGANELAD---------GYSTGAGLGAEIIGTFVLVYTVFSATDPKR 193
+ S T + A+ A GYS + L E++ + + + ATD
Sbjct: 102 LY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFA 160
Query: 194 KARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFW 252
A AP++IG A ++HL +IPVT T +NPARS A I+ A + W FW
Sbjct: 161 PAG------FAPIAIGLACTLIHLISIPVTNTSVNPARSTAVA-IFQGGWALEQLWFFW 212
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 86/179 (48%), Gaps = 17/179 (9%)
Query: 83 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGL 142
+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G I L
Sbjct: 39 VALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAAL 98
Query: 143 VKAFQKSYYTRYGGGANELAD---------GYSTGAGLGAEIIGTFVLVYTVFSATDPKR 193
+ S T + A+ A GYS + L E++ + + + ATD
Sbjct: 99 LY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFA 157
Query: 194 KARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFW 252
A AP++IG A+ ++HL +IPVT T +NPARS A I+ A + W FW
Sbjct: 158 PAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVA-IFQGGWALEQLWFFW 209
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 17/179 (9%)
Query: 83 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGL 142
+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G I L
Sbjct: 42 VALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAAL 101
Query: 143 VKAFQKSYYTRYGGGANELAD---------GYSTGAGLGAEIIGTFVLVYTVFSATDPKR 193
+ S T + A+ A GYS + L E++ + + + ATD
Sbjct: 102 LY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFA 160
Query: 194 KARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFW 252
A AP++IG A+ ++HL +IPVT +NPARS A I+ A + W FW
Sbjct: 161 PAG------FAPIAIGLALTLIHLISIPVTNCSVNPARSTAVA-IFQGGWALEQLWFFW 212
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 17/179 (9%)
Query: 83 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGL 142
+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G I L
Sbjct: 42 VALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAAL 101
Query: 143 VKAFQKSYYTRYGGGANELAD---------GYSTGAGLGAEIIGTFVLVYTVFSATDPKR 193
+ S T + A+ A GYS + L E++ + + + ATD
Sbjct: 102 LY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFA 160
Query: 194 KARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFW 252
A AP++IG A+ ++HL +IPVT +NPARS A I+ A + W FW
Sbjct: 161 PAG------FAPIAIGLALTLIHLISIPVTNCSVNPARSTAVA-IFQGGWALEQLWFFW 212
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 86/179 (48%), Gaps = 17/179 (9%)
Query: 83 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGL 142
+A A+G + + + ISGGH NPAVT GL+ + V Y++AQ +G I L
Sbjct: 42 VALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAAL 101
Query: 143 VKAFQKSYYTRYGGGANELAD---------GYSTGAGLGAEIIGTFVLVYTVFSATDPKR 193
+ S T + A+ A GYS + L E++ + + + ATD
Sbjct: 102 LY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFA 160
Query: 194 KARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFW 252
A AP++IG A+ ++HL +IPVT T +NPARS A I+ A + W FW
Sbjct: 161 PAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVA-IFQGGWALEQLWFFW 212
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 17/179 (9%)
Query: 83 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGL 142
+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G I L
Sbjct: 42 VALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAAL 101
Query: 143 VKAFQKSYYTRYGGGANELAD---------GYSTGAGLGAEIIGTFVLVYTVFSATDPKR 193
+ S T + A+ A GYS + L E++ + + + ATD
Sbjct: 102 LY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFA 160
Query: 194 KARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFW 252
A AP++IG A+ ++ L +IPVT +NPARS A I+ A + W FW
Sbjct: 161 PAG------FAPIAIGLALTLIGLISIPVTNFSVNPARSTAVA-IFQGGWALEQLWFFW 212
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 102/222 (45%), Gaps = 41/222 (18%)
Query: 83 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGL 142
I+ FG + + +Y TAG+SG H+NPAVT L+L + + ++V+Q GA C L
Sbjct: 44 ISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAAL 103
Query: 143 VKA--------FQKSYYTRYGGGAN-ELADGYST--------GAGLGAEIIGTFVLVYTV 185
V F+++++ G + +LA +ST E++ T +L+ +
Sbjct: 104 VYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLI 163
Query: 186 FSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAW 245
+ TD P P LAPL IG + ++ + P+TGT +NPAR FGP V AW
Sbjct: 164 LALTDDGNGV--PRGP-LAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVF-----AW 215
Query: 246 DDQW---------------IFWVGPFIGAAIAAL-YHQFILR 271
W + GP +GA + A Y + I R
Sbjct: 216 LAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGR 257
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 17/179 (9%)
Query: 83 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGL 142
+A A+G + + + ISGGH NPAVT GL+ + V Y++AQ +G I L
Sbjct: 42 VALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAAL 101
Query: 143 VKAFQKSYYTRYGGGANELAD---------GYSTGAGLGAEIIGTFVLVYTVFSATDPKR 193
+ S T + A+ A GYS + L E++ + + + ATD
Sbjct: 102 LY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFA 160
Query: 194 KARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFW 252
A AP++IG A+ ++ L +IPVT +NPARS A I+ A + W FW
Sbjct: 161 PAG------FAPIAIGLALTLIGLISIPVTNFSVNPARSTAVA-IFQGGWALEQLWFFW 212
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 87/195 (44%), Gaps = 14/195 (7%)
Query: 83 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGL 142
I AF I ++Y ISG HINPAVT L+ + V Y+VAQ +GA G L
Sbjct: 59 IGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLL 118
Query: 143 VKAFQKSYYTRYGG-GANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVP 201
A GG GA G G + E IGTF+L+ + +R P
Sbjct: 119 FLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP-----P 173
Query: 202 VLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKD-----KAWDDQWIFWVGPF 256
A L IG V + +TG+ +NPAR+FGP Y D W I+ +GP
Sbjct: 174 GFAGLVIGLTVGGIITTIGNITGSSLNPARTFGP---YLGDSLMGINLWQYFPIYVIGPI 230
Query: 257 IGAAIAALYHQFILR 271
+GA AA + ++ +
Sbjct: 231 VGAVAAAWLYNYLAK 245
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 112/263 (42%), Gaps = 50/263 (19%)
Query: 42 IAEFIATLLFLYITVLTVIGHKSQTDAKHXXXXXXXXXXXXIAWAFGGMIFVLVYCTAGI 101
IAEF+ T L ++ V V K + W G + + +Y TAG+
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALK-------VAGASFGQWEISVIWGLG--VAMAIYLTAGV 62
Query: 102 SGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKA--------FQKSYYTR 153
SG H+NPAVT L+L + + ++V+Q GA C LV F+++++
Sbjct: 63 SGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIV 122
Query: 154 YGGGAN-ELADGYST--------GAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLA 204
G + +LA +ST E++ T +L+ + + TD P P LA
Sbjct: 123 RGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGV--PRGP-LA 179
Query: 205 PLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQW--------------- 249
PL IG + ++ + P+TG +NPAR FGP V AW W
Sbjct: 180 PLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFL 234
Query: 250 IFWVGPFIGAAIAAL-YHQFILR 271
+ GP +GA + A Y + I R
Sbjct: 235 VPLFGPIVGAIVGAFAYRKLIGR 257
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 101/243 (41%), Gaps = 20/243 (8%)
Query: 37 FYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHXXXXXXXXXXXXIAWAFGGMIFVLVY 96
FY++ + EFI FL VL +G + T H + W G +F +
Sbjct: 5 FYKSYVREFIGE--FLGTFVLMFLG-EGATANFHTTGLSGDWYKLCLGW--GLAVFFGIL 59
Query: 97 CTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGC----GLVKAF-QKSYY 151
+A +SG H+N AV+ GL K L + +Y AQ LGA G GL F S
Sbjct: 60 VSAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKI 119
Query: 152 TRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFA 211
++ + TGA E+I T +L+ + D + H+ L+ + +G
Sbjct: 120 PQFAWETSRNPSISLTGAFFN-ELILTGILLLVILVVVDENICGK-FHILKLSSV-VGLI 176
Query: 212 VFMVHLATIPVTGTGINPARSFGPAVI----YNKDKAWDDQWIFW---VGPFIGAAIAAL 264
+ + + TG +NP+R G + Y KD D + FW V P +G+ +
Sbjct: 177 ILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQ 236
Query: 265 YHQ 267
++
Sbjct: 237 FYD 239
>pdb|1BP1|A Chain A, Crystal Structure Of Bpi, The Human Bactericidal
Permeability-Increasing Protein
Length = 456
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 2 AKDIEVGREGEFHDKDYHDPPP 23
A+ ++V +GEF+ +++H+PPP
Sbjct: 217 AETLDVQMKGEFYSENHHNPPP 238
>pdb|1EWF|A Chain A, The 1.7 Angstrom Crystal Structure Of Bpi
Length = 456
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 2 AKDIEVGREGEFHDKDYHDPPP 23
A+ ++V +GEF+ +++H+PPP
Sbjct: 217 AETLDVQMKGEFYSENHHNPPP 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,557,111
Number of Sequences: 62578
Number of extensions: 342193
Number of successful extensions: 914
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 792
Number of HSP's gapped (non-prelim): 34
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)