Query 023108
Match_columns 287
No_of_seqs 213 out of 1387
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 08:29:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223 Aquaporin (major intri 100.0 5.9E-52 1.3E-56 359.9 21.7 231 31-280 4-235 (238)
2 KOG0224 Aquaporin (major intri 100.0 5.7E-52 1.2E-56 362.2 13.5 233 34-278 28-282 (316)
3 PLN00184 aquaporin NIP1; Provi 100.0 1.1E-48 2.3E-53 351.4 25.5 226 33-275 49-277 (296)
4 COG0580 GlpF Glycerol uptake f 100.0 5.6E-48 1.2E-52 334.0 21.7 225 36-271 3-240 (241)
5 PTZ00016 aquaglyceroporin; Pro 100.0 1.4E-47 3E-52 345.0 24.6 227 35-274 47-293 (294)
6 PF00230 MIP: Major intrinsic 100.0 2.3E-47 4.9E-52 334.1 21.9 227 31-266 1-227 (227)
7 PLN00182 putative aquaporin NI 100.0 5.4E-46 1.2E-50 331.9 25.7 217 35-272 39-255 (283)
8 PRK05420 aquaporin Z; Provisio 100.0 4.7E-46 1E-50 325.2 24.4 221 38-273 2-230 (231)
9 PLN00167 aquaporin TIP5; Provi 100.0 9.6E-46 2.1E-50 327.0 25.9 233 29-277 13-246 (256)
10 PLN00166 aquaporin TIP2; Provi 100.0 1E-45 2.2E-50 326.0 24.8 230 30-273 10-239 (250)
11 PLN00026 aquaporin NIP; Provi 100.0 4.4E-46 9.6E-51 333.7 21.6 221 34-276 67-287 (298)
12 PLN00027 aquaporin TIP; Provis 100.0 1.9E-45 4E-50 325.4 24.9 231 29-273 11-241 (252)
13 PLN00183 putative aquaporin NI 100.0 7.5E-44 1.6E-48 317.1 23.6 224 33-278 40-263 (274)
14 cd00333 MIP Major intrinsic pr 100.0 6.4E-43 1.4E-47 306.0 22.8 220 39-269 1-228 (228)
15 TIGR00861 MIP MIP family chann 100.0 4.6E-41 1E-45 292.0 20.6 216 43-266 1-216 (216)
16 PLN00026 aquaporin NIP; Provi 99.7 2.4E-16 5.3E-21 141.9 9.0 109 163-273 66-174 (298)
17 PLN00184 aquaporin NIP1; Provi 99.7 2.7E-16 5.8E-21 141.8 8.9 108 164-273 50-157 (296)
18 PLN00182 putative aquaporin NI 99.6 4.8E-15 1E-19 132.9 9.5 97 36-147 157-253 (283)
19 PLN00183 putative aquaporin NI 99.6 4.2E-15 9E-20 132.8 8.4 107 164-272 41-147 (274)
20 cd00333 MIP Major intrinsic pr 99.6 1.3E-14 2.7E-19 127.2 9.1 98 35-144 127-226 (228)
21 PLN00166 aquaporin TIP2; Provi 99.5 1.1E-14 2.3E-19 128.9 8.1 106 165-272 15-125 (250)
22 PLN00167 aquaporin TIP5; Provi 99.5 2.2E-14 4.8E-19 127.2 9.2 106 165-272 19-129 (256)
23 PRK05420 aquaporin Z; Provisio 99.5 6E-14 1.3E-18 122.9 9.0 103 168-272 2-105 (231)
24 PTZ00016 aquaglyceroporin; Pro 99.5 4.8E-14 1E-18 127.5 8.3 104 167-272 49-152 (294)
25 PLN00027 aquaporin TIP; Provis 99.5 1.1E-13 2.3E-18 122.8 10.1 105 166-272 18-127 (252)
26 TIGR00861 MIP MIP family chann 99.5 1.2E-13 2.6E-18 120.0 7.7 96 35-142 119-215 (216)
27 KOG0224 Aquaporin (major intri 99.4 2.9E-13 6.2E-18 119.5 5.2 106 166-273 30-136 (316)
28 COG0580 GlpF Glycerol uptake f 99.3 3E-12 6.5E-17 111.5 7.3 108 167-276 4-114 (241)
29 KOG0223 Aquaporin (major intri 99.3 8.5E-12 1.8E-16 108.9 8.4 107 165-273 8-114 (238)
30 PF00230 MIP: Major intrinsic 99.2 1.1E-11 2.5E-16 108.4 4.5 106 166-273 6-117 (227)
31 COG2116 FocA Formate/nitrite f 95.6 1 2.2E-05 40.2 15.6 187 79-277 63-264 (265)
32 PRK11562 nitrite transporter N 95.4 1.9 4.1E-05 38.7 17.6 190 83-285 61-264 (268)
33 PRK10805 formate transporter; 94.8 3 6.5E-05 37.8 17.0 105 81-189 69-183 (285)
34 TIGR00790 fnt formate/nitrite 77.8 48 0.001 29.1 14.4 81 107-187 68-157 (239)
35 PRK09713 focB putative formate 77.4 56 0.0012 29.6 16.9 103 83-190 70-183 (282)
36 PF01226 Form_Nir_trans: Forma 76.9 53 0.0012 29.1 13.0 112 79-192 56-175 (250)
37 PF04632 FUSC: Fusaric acid re 63.2 1.7E+02 0.0037 29.3 14.3 55 95-149 356-413 (650)
38 PF03033 Glyco_transf_28: Glyc 45.1 8.4 0.00018 30.0 0.4 21 99-119 5-25 (139)
39 PRK12446 undecaprenyldiphospho 42.0 6.6 0.00014 36.5 -0.7 22 97-118 6-27 (352)
40 COG0730 Predicted permeases [G 30.0 3.4E+02 0.0074 23.6 8.4 32 115-146 66-97 (258)
41 PF08370 PDR_assoc: Plant PDR 27.5 86 0.0019 21.8 3.1 31 230-263 9-39 (65)
42 PF03842 Silic_transp: Silicon 25.3 5.8E+02 0.013 24.6 9.0 113 83-196 137-253 (512)
43 PF10710 DUF2512: Protein of u 22.7 4E+02 0.0087 21.3 8.3 63 168-238 4-71 (136)
44 PF14034 Spore_YtrH: Sporulati 20.8 1.8E+02 0.0039 22.1 4.0 46 103-148 53-100 (102)
No 1
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.9e-52 Score=359.87 Aligned_cols=231 Identities=54% Similarity=0.866 Sum_probs=207.3
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHH
Q 023108 31 ELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAV 110 (287)
Q Consensus 31 ~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPav 110 (287)
+..+++.+|++++||++|++++|++|+++...... +...+.+.+++.+|+.+++.+++++++||||+||||
T Consensus 4 ~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~---------~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAV 74 (238)
T KOG0223|consen 4 ELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKY---------GGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAV 74 (238)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------CCCchhHHHHHHHHHHHHHHHhhhccccccccCHHH
Confidence 44568999999999999999999999988765541 233467889999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCccccCCCCcchhhHHHHHHHHHHHHHHHHH-hc
Q 023108 111 TFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFS-AT 189 (287)
Q Consensus 111 Tla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~-~~ 189 (287)
|+++++.|++++.+++.|+.+|++|+++|+++++.+.+.+++..+.+.+.+.++.+.+|+++.|++.||+|++++++ ..
T Consensus 75 T~a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~ 154 (238)
T KOG0223|consen 75 TLAFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATAT 154 (238)
T ss_pred HHHHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEee
Confidence 99999999999999999999999999999999999998764445556677889999999999999999999999998 77
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHHHHH
Q 023108 190 DPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFI 269 (287)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y~~~ 269 (287)
|+|++ .+.|+.||+++.+.+++.+++||++|||||+|||++.++ .|+++|+||+||++|+++++++|+++
T Consensus 155 d~~~~-------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~~a~~~y~~v 224 (238)
T KOG0223|consen 155 DPRRS-------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAILAALIYRLV 224 (238)
T ss_pred cCCCc-------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHHHHHHHHHHh
Confidence 77665 478999999999999999999999999999999999975 49999999999999999999999999
Q ss_pred ccccccccccC
Q 023108 270 LRASASKALGS 280 (287)
Q Consensus 270 ~~~~~~~~~~~ 280 (287)
+.++.+|+.++
T Consensus 225 ~~~~~~~~~~~ 235 (238)
T KOG0223|consen 225 FIPDESEPTKS 235 (238)
T ss_pred ccCccccccCc
Confidence 99985555443
No 2
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-52 Score=362.15 Aligned_cols=233 Identities=27% Similarity=0.447 Sum_probs=203.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHHH
Q 023108 34 RWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFG 113 (287)
Q Consensus 34 ~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla 113 (287)
++++.|++++||+||++|++++++++.+...+... ..+++.+.++||+.+++.+|+.+++||||+|||||++
T Consensus 28 ~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~--------~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a 99 (316)
T KOG0224|consen 28 RNELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGT--------GGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLA 99 (316)
T ss_pred HHHHHHHHHHHHHhHHHHHhhccceeEEEEeccCC--------CCceEEEEehHhHHHHHHHHhhccccccccCHHHHHH
Confidence 56799999999999999999999988876655322 2245668889999999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCcc--------------ccCCCCcchhhHHHHHHHHH
Q 023108 114 LFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGAN--------------ELADGYSTGAGLGAEIIGTF 179 (287)
Q Consensus 114 ~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~--------------~~~~~~s~~~~f~~E~l~T~ 179 (287)
+++.||++|+|+++|+++|++||++|++.+|.+|.+.+.+++++.. .+.+..+.+++|++|+++|.
T Consensus 100 ~~~~g~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa 179 (316)
T KOG0224|consen 100 MCILGRLPWKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTA 179 (316)
T ss_pred HHHhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887766532 23567899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhc-----CCCCCC---Cccccc
Q 023108 180 VLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIY-----NKDKAW---DDQWIF 251 (287)
Q Consensus 180 ~L~~~vl~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~-----~~~~~~---~~~wvy 251 (287)
+|+.++++++|++|..+ ..+.|+.+|+.+.++..+.+.++|..+||||||+||++. +.+..+ .+.|++
T Consensus 180 ~L~~~l~aI~D~rN~~p----~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvP 255 (316)
T KOG0224|consen 180 MLVLCLFAITDKRNPIP----TGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVP 255 (316)
T ss_pred HHHhheeEEecCCCCCC----cchhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHHHHHhcchhhcccCCceeeee
Confidence 99999999999998433 568899999999999999999999999999999999982 322222 467899
Q ss_pred chhhHHHHHHHHHHHHHHccccccccc
Q 023108 252 WVGPFIGAAIAALYHQFILRASASKAL 278 (287)
Q Consensus 252 ~v~p~lGa~~a~~~y~~~~~~~~~~~~ 278 (287)
|++|++|+++++++|++++..+.++++
T Consensus 256 ivgPl~Gai~G~~iY~~~Ig~h~~~~~ 282 (316)
T KOG0224|consen 256 IVGPLIGAILGGWIYDFFIGFHIPREP 282 (316)
T ss_pred ehhhhhhhhhhhhhheeeeeccCCCCC
Confidence 999999999999999999977766433
No 3
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=1.1e-48 Score=351.35 Aligned_cols=226 Identities=27% Similarity=0.429 Sum_probs=188.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHH
Q 023108 33 TRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTF 112 (287)
Q Consensus 33 ~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTl 112 (287)
...+++|++++||+|||+|+|++++++...... . ...+++.+++++|+++++.+++++++||||+|||||+
T Consensus 49 ~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~-~--------~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTl 119 (296)
T PLN00184 49 VSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQN-D--------NVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTI 119 (296)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-C--------CccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHH
Confidence 355789999999999999999999876532211 1 1124667899999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCC---ccccCCCCcchhhHHHHHHHHHHHHHHHHHhc
Q 023108 113 GLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGG---ANELADGYSTGAGLGAEIIGTFVLVYTVFSAT 189 (287)
Q Consensus 113 a~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~ 189 (287)
++++.|+++|.++++|+++|++|+++|+++++.+++......... .....+..+..++|+.|+++|++|+++++++.
T Consensus 120 a~al~g~~~~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~ 199 (296)
T PLN00184 120 AFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVA 199 (296)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHhee
Confidence 999999999999999999999999999999999886433221111 11122345788999999999999999999876
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHHHHH
Q 023108 190 DPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFI 269 (287)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y~~~ 269 (287)
++++.. ..+.|+.||+++.+.+++.+++||++|||||||||+++.+ .|+++||||+||++|+++|+++|+++
T Consensus 200 ~~~~~~-----~~~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~---~~~~~WVy~vgPilGa~laal~y~~l 271 (296)
T PLN00184 200 TDNRAI-----GELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYG---CYKGIWIYIVAPTLGAIAGAWVYNTV 271 (296)
T ss_pred ccCcCC-----CcchHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhh---cccccchHHhHHHHHHHHHHHHHHHH
Confidence 654321 2367999999999999999999999999999999999854 68899999999999999999999999
Q ss_pred cccccc
Q 023108 270 LRASAS 275 (287)
Q Consensus 270 ~~~~~~ 275 (287)
+.++.+
T Consensus 272 ~~~~~~ 277 (296)
T PLN00184 272 RYTDKP 277 (296)
T ss_pred hcCCCc
Confidence 876544
No 4
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-48 Score=333.97 Aligned_cols=225 Identities=35% Similarity=0.543 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHH
Q 023108 36 SFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 115 (287)
Q Consensus 36 ~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~ 115 (287)
+..|++++||+||++|++++++++........+ ....+++.++++||+.+++.+|+++++||+|+|||||++++
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~------~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la 76 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSK------ALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALA 76 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhcccc------ccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHH
Confidence 456788999999999999999998877654432 23456777999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcC------CCccccCC-CCcchhhHHHHHHHHHHHHHHHHHh
Q 023108 116 LARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYG------GGANELAD-GYSTGAGLGAEIIGTFVLVYTVFSA 188 (287)
Q Consensus 116 ~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~------~~~~~~~~-~~s~~~~f~~E~l~T~~L~~~vl~~ 188 (287)
+.|+++|++++.||++|++||++|+.+++.++++.+...+ .+.....| ..+..++|+.|+++|++|+++++++
T Consensus 77 ~~g~fp~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~ 156 (241)
T COG0580 77 VRGRFPWRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILAL 156 (241)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988766554 12222223 3467899999999999999999998
Q ss_pred cCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhc---CC---CCCCCcccccchhhHHHHHHH
Q 023108 189 TDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIY---NK---DKAWDDQWIFWVGPFIGAAIA 262 (287)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~---~~---~~~~~~~wvy~v~p~lGa~~a 262 (287)
.++++. + ..+.|+.||+.+..+.++.++.||.++|||||+|||+.+ ++ ..++.|.|+||++|++|+++|
T Consensus 157 ~~~~~~--~---~~~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg 231 (241)
T COG0580 157 TDDGNA--N---AGFAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILG 231 (241)
T ss_pred hccCcc--c---ccchHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHH
Confidence 875444 1 347899999999999999999999999999999999952 21 112268999999999999999
Q ss_pred HHHHHHHcc
Q 023108 263 ALYHQFILR 271 (287)
Q Consensus 263 ~~~y~~~~~ 271 (287)
+++|+.++.
T Consensus 232 ~~~~~~~~~ 240 (241)
T COG0580 232 ALLYKLLLG 240 (241)
T ss_pred HHHHHHHcc
Confidence 999998765
No 5
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=1.4e-47 Score=345.04 Aligned_cols=227 Identities=26% Similarity=0.386 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHHHH
Q 023108 35 WSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 114 (287)
Q Consensus 35 ~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~ 114 (287)
++++|++++||+||++++|++++++.+..... ...+.+.+++++|+++++.+++++++||||+|||||+++
T Consensus 47 ~~~~~~~laEfigT~llvf~g~g~~~~~~~~~---------~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~ 117 (294)
T PTZ00016 47 RPNVREYVAEFLGTFVLLFFGEGVVATTHTVG---------NNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGN 117 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccC---------CCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHH
Confidence 67889999999999999999998765432211 012356789999999999999999999999999999999
Q ss_pred HHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCC-------------ccccCCCCcchhhHHHHHHHHHHH
Q 023108 115 FLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGG-------------ANELADGYSTGAGLGAEIIGTFVL 181 (287)
Q Consensus 115 ~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~-------------~~~~~~~~s~~~~f~~E~l~T~~L 181 (287)
++.|+++|.+++.|+++|++|+++|++++|.++++.+.+.+.+ .....++.+..++|+.|+++|++|
T Consensus 118 ~l~g~i~~~~~~~YiiaQ~lGa~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~p~~s~~~a~~~E~i~T~iL 197 (294)
T PTZ00016 118 AVFGKFPWKKLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFAGVFATYPREGNFYAIFSELILTAIL 197 (294)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcccccccccccccceeeCCCCccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988755433211 112234567789999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcC---CCCCCC----cccccchh
Q 023108 182 VYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYN---KDKAWD----DQWIFWVG 254 (287)
Q Consensus 182 ~~~vl~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~---~~~~~~----~~wvy~v~ 254 (287)
+++++++.|+++... ....|+.+|+.+.++.++.+++||++||||||||||++.. +...|+ ++||||+|
T Consensus 198 v~~ila~~d~~~~~~----~~~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vg 273 (294)
T PTZ00016 198 LLVILAITDPNNCPA----FNYLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVA 273 (294)
T ss_pred HHHHHHhccCccCCC----cCcccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeeehH
Confidence 999999988876432 2357999999999999999999999999999999999852 222343 68999999
Q ss_pred hHHHHHHHHHHHHHHccccc
Q 023108 255 PFIGAAIAALYHQFILRASA 274 (287)
Q Consensus 255 p~lGa~~a~~~y~~~~~~~~ 274 (287)
|++|+++|+++|++++.|+.
T Consensus 274 P~vGa~~aally~~ll~~~~ 293 (294)
T PTZ00016 274 PFVGAVLGMFLYDKFIPPLI 293 (294)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999998764
No 6
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=2.3e-47 Score=334.14 Aligned_cols=227 Identities=40% Similarity=0.617 Sum_probs=194.1
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHH
Q 023108 31 ELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAV 110 (287)
Q Consensus 31 ~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPav 110 (287)
|.++++++|++++||+||++++|+++++..+......+. +.....++..+++++|+++++.+++++++||||+||||
T Consensus 1 ~~~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~---~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaV 77 (227)
T PF00230_consen 1 ELKSPSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSS---GSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAV 77 (227)
T ss_dssp GCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTT---STTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc---cccccccHHHHHHHHHHhhhhhhhhhhhccccccccch
Confidence 456789999999999999999999998665433322210 00122457788999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCccccCCCCcchhhHHHHHHHHHHHHHHHHHhcC
Q 023108 111 TFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATD 190 (287)
Q Consensus 111 Tla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~~ 190 (287)
|++.++.|+++|.+++.|+++|++|+++|+.+++.++++.........+.+.++.+..++|+.|+++|++|+++++...|
T Consensus 78 Tla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~ 157 (227)
T PF00230_consen 78 TLAFALTGRISWKKAIVYIIAQFLGAFLGALLVYALYPDSNSAAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAVAD 157 (227)
T ss_dssp HHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHTCTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhheeeeeeecccceeeEEeeccccccccccchhhcccCcccccccccccccccchhhhhhhhhhhhhhHHHhhhhhhcc
Confidence 99999999999999999999999999999999999998764444444566778889999999999999999999999999
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHH
Q 023108 191 PKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYH 266 (287)
Q Consensus 191 ~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y 266 (287)
++++.+. +.+.|+.||+.+.+..+..+..||+++||||||+|+++.+ .|+++|+||++|++|+++|+++|
T Consensus 158 ~~~~~~~---~~~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~---~~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 158 DKRKFPL---GPLAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSG---IWDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp TTSSSTS---SGGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHT---HHTTTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccc---ccccceeEEEEEeecccccccccccccCchhhcCceeecc---cCCeEEEEEehHHHHHHHHHhhC
Confidence 8877643 3478999999999999999999999999999999999965 39999999999999999999987
No 7
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=5.4e-46 Score=331.95 Aligned_cols=217 Identities=26% Similarity=0.468 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHHHH
Q 023108 35 WSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 114 (287)
Q Consensus 35 ~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~ 114 (287)
++++|++++||+|||+|+|++++++....... ...+.+.+++++|+++++.+++++++||||+|||||+++
T Consensus 39 ~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~---------~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~ 109 (283)
T PLN00182 39 VCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYG---------GTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTF 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC---------CCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHH
Confidence 47889999999999999999998766432210 112456788899999999999999999999999999999
Q ss_pred HHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCccccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 023108 115 FLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRK 194 (287)
Q Consensus 115 ~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~~~~~~ 194 (287)
++.|+++|.+++.|+++|++|+++|+++++.+++... .+.....++.+.+++++.|+++|++|+++++.+.++++.
T Consensus 110 ~~~~~~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~~~~----~~~~~~~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~ 185 (283)
T PLN00182 110 AIFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTP----EAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSRA 185 (283)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----cceeeCCCCcchHHHHHHHHHHHHHHHHHHHhheecccc
Confidence 9999999999999999999999999999999885321 112223345678899999999999999999987554432
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHHHHHccc
Q 023108 195 ARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFILRA 272 (287)
Q Consensus 195 ~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y~~~~~~ 272 (287)
. +.+.|+.+|+++.+..++.+++||+++||||+|+|+++.+ .|.++|+||++|++|+++|+++|++++.+
T Consensus 186 ~-----~~~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~---~~~~~wvY~vap~lGA~lgally~~l~~~ 255 (283)
T PLN00182 186 V-----GELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMG---RYKGIWVYIVGPFVGIIAGGFVYNLIRFT 255 (283)
T ss_pred C-----CcchhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhc---cccceeHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 2357999999999999999999999999999999999843 58999999999999999999999999853
No 8
>PRK05420 aquaporin Z; Provisional
Probab=100.00 E-value=4.7e-46 Score=325.24 Aligned_cols=221 Identities=33% Similarity=0.584 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHHHh
Q 023108 38 YRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLA 117 (287)
Q Consensus 38 ~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~~~ 117 (287)
+|++++||+||++|+|++++++....... ....+.+.+++++|+++++.+++++++||+|+|||||+++++.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~--------~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~ 73 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFP--------ELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAG 73 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccC--------CCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHh
Confidence 58999999999999999998764321111 1123466789999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhh--hhcC-----CCc-cccCCCCcchhhHHHHHHHHHHHHHHHHHhc
Q 023108 118 RKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYY--TRYG-----GGA-NELADGYSTGAGLGAEIIGTFVLVYTVFSAT 189 (287)
Q Consensus 118 g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~--~~~~-----~~~-~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~ 189 (287)
|+++|.+.+.|+++|++|+++|+.+++.++++.. +..+ .+. ...+...+..++++.|+++|++|+++++...
T Consensus 74 ~~i~~~~~~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~~~ 153 (231)
T PRK05420 74 GRFPAKELVPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGAT 153 (231)
T ss_pred CCCCHHHhHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998876421 1100 000 1112345678999999999999999999988
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHHHHH
Q 023108 190 DPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFI 269 (287)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y~~~ 269 (287)
|+|+. +...|+.+|+.+.+..++.+++||++|||||||||+++.+ +..|+++|+||++|++|+++++++|+++
T Consensus 154 ~~~~~------~~~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g-~~~~~~~wvy~vgP~~Ga~laa~~y~~l 226 (231)
T PRK05420 154 DKRAP------AGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVG-GWALEQLWLFWVAPIVGAIIGGLIYRLL 226 (231)
T ss_pred CCCCC------CcchHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhC-CCCccceEEeehHHHHHHHHHHHHHHHH
Confidence 86542 2367999999999999999999999999999999999964 3345689999999999999999999999
Q ss_pred cccc
Q 023108 270 LRAS 273 (287)
Q Consensus 270 ~~~~ 273 (287)
++++
T Consensus 227 ~~~~ 230 (231)
T PRK05420 227 LEKD 230 (231)
T ss_pred hccC
Confidence 8765
No 9
>PLN00167 aquaporin TIP5; Provisional
Probab=100.00 E-value=9.6e-46 Score=327.05 Aligned_cols=233 Identities=31% Similarity=0.503 Sum_probs=193.7
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccc
Q 023108 29 AEELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKS-QTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHIN 107 (287)
Q Consensus 29 ~~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~N 107 (287)
.++..+++++|++++||+|||+++|+++++...... .... .....+++.+++++|+++++.+++++++||+|+|
T Consensus 13 ~~~~~~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~-----~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~N 87 (256)
T PLN00167 13 FQQSVTRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDA-----ASDPSSLLIVAIANAFALSSAVYIAANISGGHVN 87 (256)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc-----cCCCCcchHHHHHHHHHHHHHHHHhhcccccccC
Confidence 455566889999999999999999999988764321 1110 0112346779999999999999999999999999
Q ss_pred hHHHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCccccCCCCcchhhHHHHHHHHHHHHHHHHH
Q 023108 108 PAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFS 187 (287)
Q Consensus 108 PavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~ 187 (287)
||||++.++.|+++|.+++.|+++|++|+++|+.+++.++++... +.+...++.+..++++.|+++|++|+++++.
T Consensus 88 PAvtl~~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~----~~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~ 163 (256)
T PLN00167 88 PAVTFGMAVGGHISVPTAMFYWISQMLASVMACLFLKVTTVGQHV----PTYKIAEEMTGFGASVLEGVLTFGLVYTVYA 163 (256)
T ss_pred HHHHHHHHHhCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhccccc----cccccCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888654211 1122234556778999999999999999999
Q ss_pred hcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHHH
Q 023108 188 ATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQ 267 (287)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y~ 267 (287)
..|+|+... +...|+.+|+.+.+..++.+++||+++||||||+|+++++ .|+++|+||+||++|+++++++|+
T Consensus 164 ~~~~~~~~~----~~~~pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~---~~~~~wvywvgP~~Ga~l~a~~y~ 236 (256)
T PLN00167 164 AGDPRRGLL----GAIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAG---SFKNQAVYWVGPLLGGAVAGLLYD 236 (256)
T ss_pred hccccccCC----CCcchHHHHHHHHHHHHhccCCCCcccCcccchHHHHhcc---CccCcEEEeHHHHHHHHHHHHHHH
Confidence 888765321 3467999999999999999999999999999999999854 588999999999999999999999
Q ss_pred HHcccccccc
Q 023108 268 FILRASASKA 277 (287)
Q Consensus 268 ~~~~~~~~~~ 277 (287)
+++.|+.++.
T Consensus 237 ~l~~~~~~~~ 246 (256)
T PLN00167 237 NVVFPTQDDR 246 (256)
T ss_pred HHhCCCcCCC
Confidence 9998775543
No 10
>PLN00166 aquaporin TIP2; Provisional
Probab=100.00 E-value=1e-45 Score=326.02 Aligned_cols=230 Identities=37% Similarity=0.605 Sum_probs=188.4
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchH
Q 023108 30 EELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPA 109 (287)
Q Consensus 30 ~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPa 109 (287)
+|...++.+|++++||+|||+|+|++++++.......... .....+++.+++++|+.+++.+++++++||+|+|||
T Consensus 10 ~~~~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~----~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPA 85 (250)
T PLN00166 10 GDSFSVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDA----ALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPA 85 (250)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc----cCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHH
Confidence 3444578889999999999999999998866421111000 011123567899999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCccccCCCCcchhhHHHHHHHHHHHHHHHHHhc
Q 023108 110 VTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSAT 189 (287)
Q Consensus 110 vTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~ 189 (287)
||+++++.|+++|.+.++|+++|++|+++|+.+++.++++.- .......++.+..++++.|+++|++|+++++...
T Consensus 86 vt~~~~l~g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~ 161 (250)
T PLN00166 86 VTLGLAIGGNITIITGFFYWIAQCLGSIVACLLLVFVTNGES----VPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATA 161 (250)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----CcccccCCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999988865421 1122234566788999999999999999999876
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHHHHH
Q 023108 190 DPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFI 269 (287)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y~~~ 269 (287)
+++++... ..+.|+.+|+.+.+..+..+++||+++|||||||||++.+ .|+++|+||+||++|+++++++|+.+
T Consensus 162 ~~~~~~~~---~~~~p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~---~~~~~wvywvgPi~Ga~~aa~~y~~l 235 (250)
T PLN00166 162 ADPKKGSL---GTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG---DFSQIWIYWVGPLVGGALAGLIYGDV 235 (250)
T ss_pred cccccccc---ccchhHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcC---CCcccchhhHHHHHHHHHHHHHHHHH
Confidence 65543211 3478999999999999999999999999999999999854 59999999999999999999999988
Q ss_pred cccc
Q 023108 270 LRAS 273 (287)
Q Consensus 270 ~~~~ 273 (287)
+.+.
T Consensus 236 ~~~~ 239 (250)
T PLN00166 236 FIGS 239 (250)
T ss_pred hccc
Confidence 6543
No 11
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=4.4e-46 Score=333.71 Aligned_cols=221 Identities=28% Similarity=0.447 Sum_probs=184.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHHH
Q 023108 34 RWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFG 113 (287)
Q Consensus 34 ~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla 113 (287)
..+++|++++||+|||+|+|+++++....... . ...+++.+++++|+++++.+++++++||||+|||||++
T Consensus 67 ~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~-~--------~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla 137 (298)
T PLN00026 67 DVSLTRKLGAEFVGTFILIFAATAGPIVNQKY-D--------GAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIA 137 (298)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccc-C--------CccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHH
Confidence 45688999999999999999998754421111 1 01235667899999999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCccccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCC
Q 023108 114 LFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKR 193 (287)
Q Consensus 114 ~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~~~~~ 193 (287)
+++.++++|.+.++|+++|++|+++|+++++.++++... .+. ..++.+..++++.|+++|++|+++++++.++++
T Consensus 138 ~al~g~~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~~~---~g~--t~p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~ 212 (298)
T PLN00026 138 FAALRHFPWKHVPAYIAAQVSASICASFALKGVFHPFMS---GGV--TVPSVSTGQAFALEFIITFNLLFVVTAVATDTR 212 (298)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---Cce--eeecccHHHHHHHHHHHHHHHHHhheeeecCCC
Confidence 999999999999999999999999999999999875321 122 224568899999999999999999987654433
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHHHHHcccc
Q 023108 194 KARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFILRAS 273 (287)
Q Consensus 194 ~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y~~~~~~~ 273 (287)
.. ....++.||+++.+.+++.+.+||++|||||||+|+++.+ .|.++|+||+||++|+++|+++|+++..++
T Consensus 213 ~~-----~~~~~l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~---~~~~~wVy~vaPilGAilga~ly~~~~~~~ 284 (298)
T PLN00026 213 AV-----GELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAG---NYRAIWIYLVAPTLGALAGAGTYTAVKLRE 284 (298)
T ss_pred Cc-----CCccchHHHHHHHHHHHHhcccCccccChHHHHHHHHhcC---CchheeHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 21 2346899999999999999999999999999999999843 799999999999999999999999997655
Q ss_pred ccc
Q 023108 274 ASK 276 (287)
Q Consensus 274 ~~~ 276 (287)
+.+
T Consensus 285 ~~~ 287 (298)
T PLN00026 285 EDG 287 (298)
T ss_pred ccc
Confidence 443
No 12
>PLN00027 aquaporin TIP; Provisional
Probab=100.00 E-value=1.9e-45 Score=325.42 Aligned_cols=231 Identities=36% Similarity=0.600 Sum_probs=189.1
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccch
Q 023108 29 AEELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINP 108 (287)
Q Consensus 29 ~~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NP 108 (287)
.+|...++.+|++++||++|++|+|+++++........... .....+++.+++++|+++++.+++++++||+|+||
T Consensus 11 ~~~~~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~----~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NP 86 (252)
T PLN00027 11 PGEASHPDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNG----STTPAGLVAAALAHAFALFVAVSVGANISGGHVNP 86 (252)
T ss_pred hHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC----CCCCcchHHHHHHHHHHHHHHHHHHcccCccccCh
Confidence 34444578899999999999999999998765322111100 01123466789999999999999999999999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCccccCCCCcchhhHHHHHHHHHHHHHHHHHh
Q 023108 109 AVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSA 188 (287)
Q Consensus 109 avTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~ 188 (287)
|+|+++++.|+++|.+.+.|+++|++|+++|+.+++.++++.. .+.....++.+..++++.|+++|++|+++++..
T Consensus 87 Avtl~~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~ 162 (252)
T PLN00027 87 AVTFGAFIGGNITLLRGILYWIAQLLGSVVACLLLKFSTGGLE----TSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYAT 162 (252)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cccccCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887765321 122334457788999999999999999999987
Q ss_pred cCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHHHH
Q 023108 189 TDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQF 268 (287)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y~~ 268 (287)
..++++... ..+.|+.+|+.+..+.++.+++||++||||||||||++.+ .|+++|+||+||++|+++++++|++
T Consensus 163 ~~~~~~~~~---~~~~p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~---~~~~~wvy~vgP~~Ga~laa~~y~~ 236 (252)
T PLN00027 163 AVDPKKGDL---GIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW---TWTNHWVYWAGPLIGGGIAGLVYEL 236 (252)
T ss_pred ccccccCCc---cchHHHHHHHHHHHHHHhcccccccccCcchhHHHHHHhh---cchhhhHHHHHHHHHHHHHHHHHHH
Confidence 533332211 3478999999999999999999999999999999999954 5999999999999999999999999
Q ss_pred Hcccc
Q 023108 269 ILRAS 273 (287)
Q Consensus 269 ~~~~~ 273 (287)
++.++
T Consensus 237 l~~~~ 241 (252)
T PLN00027 237 IFIGS 241 (252)
T ss_pred HhcCC
Confidence 98654
No 13
>PLN00183 putative aquaporin NIP7; Provisional
Probab=100.00 E-value=7.5e-44 Score=317.09 Aligned_cols=224 Identities=25% Similarity=0.398 Sum_probs=187.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHH
Q 023108 33 TRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTF 112 (287)
Q Consensus 33 ~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTl 112 (287)
.+.+.+|++++||++||+++|++++++....... ...+++.+++++|+++++.+++++++||+|+|||||+
T Consensus 40 ~~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~---------~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTl 110 (274)
T PLN00183 40 MDLNPARMVLAEMVGTFILMFCVCGIIASTQLSG---------GEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTI 110 (274)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhccccC---------CccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHH
Confidence 4567889999999999999999988765432211 1124566888999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCccccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCC
Q 023108 113 GLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPK 192 (287)
Q Consensus 113 a~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~~~~ 192 (287)
++++.++++|.++++|+++|++|+++|+.+++.+++... ......+..+.+++++.|+++|++|+++++...+++
T Consensus 111 a~~l~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~-----~~~~~~p~~~~~~~~~~E~v~T~iLv~~i~~~~~~~ 185 (274)
T PLN00183 111 AFATFGHFPWSKVPLYITAQTVGSVLATYVGVSVYGVKA-----DLMTTKPAQGCSSAFWVEFIATFIVMFLAASLTSQP 185 (274)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----ccccCCCcccHHHHHHHHHHHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999888876421 111222344568899999999999999999887765
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHHHHHccc
Q 023108 193 RKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFILRA 272 (287)
Q Consensus 193 ~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y~~~~~~ 272 (287)
++. ....|+.+|+.+.+.+++.+++||+++||||+|+|+++. ..|+++|+||++|++|+++++++|++++.+
T Consensus 186 ~~~-----~~~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~---~~~~~~wvy~vapilGailaa~l~~~l~~~ 257 (274)
T PLN00183 186 QSL-----GHLSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVS---WDFKDIWIYITAPTIGAVAGALMFHLLRLR 257 (274)
T ss_pred cCC-----CCceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhC---CChhheehHHHHHHHHHHHHHHHHHHHhcc
Confidence 322 235689999999999999999999999999999999984 369999999999999999999999999987
Q ss_pred cccccc
Q 023108 273 SASKAL 278 (287)
Q Consensus 273 ~~~~~~ 278 (287)
+.....
T Consensus 258 ~~~~~~ 263 (274)
T PLN00183 258 TQPCSP 263 (274)
T ss_pred CCCCCC
Confidence 755433
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=100.00 E-value=6.4e-43 Score=306.01 Aligned_cols=220 Identities=41% Similarity=0.711 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHHHhc
Q 023108 39 RAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLAR 118 (287)
Q Consensus 39 ~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~~~g 118 (287)
|++++||+||+++++.++++..+...... ...+++.+++++|+.+.+.+++++++||+|+|||+|+++++.|
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~--------~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~ 72 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGG--------ASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGG 72 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCC--------CCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhC
Confidence 57899999999999999988765432211 1123566899999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCc--------cccCCCCcchhhHHHHHHHHHHHHHHHHHhcC
Q 023108 119 KVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGA--------NELADGYSTGAGLGAEIIGTFVLVYTVFSATD 190 (287)
Q Consensus 119 ~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~~ 190 (287)
+++|.+.++|+++|++|+++|+.+++.++++.+++.+... +.+.++.+..++++.|+++|++|+++++...+
T Consensus 73 ~~~~~~~~~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~ 152 (228)
T cd00333 73 RFPLIRVIPYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTD 152 (228)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999887665443322 23455678889999999999999999999887
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHHHHH
Q 023108 191 PKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFI 269 (287)
Q Consensus 191 ~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y~~~ 269 (287)
+++.... ....|+.+|+.+.+..++.+.+||+++|||||++|+++.+....|+++|+||++|++|+++|+++|+++
T Consensus 153 ~~~~~~~---~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 153 DPNGPPP---GGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred ccccCCC---CCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence 6554211 346799999999999999999999999999999999985422269999999999999999999999864
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=100.00 E-value=4.6e-41 Score=292.01 Aligned_cols=216 Identities=42% Similarity=0.751 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHHHhcCCch
Q 023108 43 AEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL 122 (287)
Q Consensus 43 ~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~ 122 (287)
+||+||++++++++++......+.... .....+.+.+++++|+.+.+.+++++++||+|+|||||+++++.++++|
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~ 76 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYG----AVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPL 76 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccC----CCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCH
Confidence 599999999999998876533221100 0111145678999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCccccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCc
Q 023108 123 VRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPV 202 (287)
Q Consensus 123 ~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~~~~~~~~~~~~~~ 202 (287)
.+.++|+++|++|+++|+.+++.++++.+...........++.+..++++.|+++|++|+++++...+++++... ..
T Consensus 77 ~~~~~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~---~~ 153 (216)
T TIGR00861 77 KRVPVYIVAQLIGAILGAALLYGLTSGLFPGNLAVNGSGAAGVSSGQAFFVEFIGTAILVLVIFATTDPRNRVPR---GG 153 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccccCCccccCCCCCcccHHHHHHHHHHHHHHHHHHHheeecCCCCCCC---Cc
Confidence 999999999999999999999998876542111111222445688899999999999999999988776544322 23
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHH
Q 023108 203 LAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYH 266 (287)
Q Consensus 203 ~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y 266 (287)
..|+.+|+.+.+..+..+.+||+++|||||++|+++.+ ...|+++|+||++|++|+++++++|
T Consensus 154 ~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~-~~~~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 154 FAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAG-LAGWGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred cHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhc-cccccceeHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999853 3479999999999999999999875
No 16
>PLN00026 aquaporin NIP; Provisional
Probab=99.66 E-value=2.4e-16 Score=141.85 Aligned_cols=109 Identities=20% Similarity=0.312 Sum_probs=87.9
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCC
Q 023108 163 DGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKD 242 (287)
Q Consensus 163 ~~~s~~~~f~~E~l~T~~L~~~vl~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~ 242 (287)
++.+.++.++.|+++||+|++++++....+.+..........++.+|+++.+.+++.+.+||+|+||||++++++. ++
T Consensus 66 ~~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~--g~ 143 (298)
T PLN00026 66 PDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAAL--RH 143 (298)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHh--CC
Confidence 4566789999999999999999986422211111111122347899999999999999999999999999999997 45
Q ss_pred CCCCcccccchhhHHHHHHHHHHHHHHcccc
Q 023108 243 KAWDDQWIFWVGPFIGAAIAALYHQFILRAS 273 (287)
Q Consensus 243 ~~~~~~wvy~v~p~lGa~~a~~~y~~~~~~~ 273 (287)
..|.+.|+||++|++|+++|+++++.++.+.
T Consensus 144 ~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~ 174 (298)
T PLN00026 144 FPWKHVPAYIAAQVSASICASFALKGVFHPF 174 (298)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6899999999999999999999999988763
No 17
>PLN00184 aquaporin NIP1; Provisional
Probab=99.66 E-value=2.7e-16 Score=141.82 Aligned_cols=108 Identities=18% Similarity=0.208 Sum_probs=86.7
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCC
Q 023108 164 GYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDK 243 (287)
Q Consensus 164 ~~s~~~~f~~E~l~T~~L~~~vl~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~ 243 (287)
+.+..+.++.|+++|++|++++++....+............++.+|+++++.+++++.+||+|+||||++++++. ++.
T Consensus 50 ~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~--g~~ 127 (296)
T PLN00184 50 SVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASC--GRF 127 (296)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHh--CCC
Confidence 334578999999999999999987653222111111122357778999999999999999999999999999997 456
Q ss_pred CCCcccccchhhHHHHHHHHHHHHHHcccc
Q 023108 244 AWDDQWIFWVGPFIGAAIAALYHQFILRAS 273 (287)
Q Consensus 244 ~~~~~wvy~v~p~lGa~~a~~~y~~~~~~~ 273 (287)
.|.+.|+||++|++|+++|+++++.++..+
T Consensus 128 ~~~~~~~YiiaQllGA~lga~~~~~l~~~~ 157 (296)
T PLN00184 128 PLKQVPAYVISQVIGSTLAAATLRLLFGLD 157 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 899999999999999999999999888643
No 18
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.59 E-value=4.8e-15 Score=132.90 Aligned_cols=97 Identities=25% Similarity=0.370 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHH
Q 023108 36 SFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 115 (287)
Q Consensus 36 ~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~ 115 (287)
+.++.+++|+++|++|++++++.....+ . . +.+ .++++|+.+++.+++.+++||+|+|||+|++++
T Consensus 157 s~~~a~~~E~l~TfiLv~~i~~~~~~~~-~-~-----------~~~-~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpa 222 (283)
T PLN00182 157 SSGQALVAEIIISFLLMFVISGVATDSR-A-V-----------GEL-AGIAVGMTIILNVFVAGPISGASMNPARSLGPA 222 (283)
T ss_pred chHHHHHHHHHHHHHHHHHHHhheeccc-c-C-----------Ccc-hhHHHHHHHHHHHHHccccCccccChHHHHHHH
Confidence 5689999999999999998876533211 1 0 011 578899999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhHHHHHhhhhhhhhc
Q 023108 116 LARKVSLVRAVMYMVAQCLGAICGCGLVKAFQ 147 (287)
Q Consensus 116 ~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~ 147 (287)
+.++ .|.+.|+||++|++|+++|+++.+.+.
T Consensus 223 l~~~-~~~~~wvY~vap~lGA~lgally~~l~ 253 (283)
T PLN00182 223 IVMG-RYKGIWVYIVGPFVGIIAGGFVYNLIR 253 (283)
T ss_pred HHhc-cccceeHHHHHHHHHHHHHHHHHHHHh
Confidence 9865 589999999999999999999987775
No 19
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.58 E-value=4.2e-15 Score=132.83 Aligned_cols=107 Identities=16% Similarity=0.275 Sum_probs=88.1
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCC
Q 023108 164 GYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDK 243 (287)
Q Consensus 164 ~~s~~~~f~~E~l~T~~L~~~vl~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~ 243 (287)
+.+.++.++.|+++|++++++.+...+.++....+......++.+|+++.+.+++.+.+||+++||||++++++. +..
T Consensus 41 ~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l~--g~i 118 (274)
T PLN00183 41 DLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFATF--GHF 118 (274)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHh--cCC
Confidence 345678999999999999999998766543322111112357799999999999999999999999999999998 456
Q ss_pred CCCcccccchhhHHHHHHHHHHHHHHccc
Q 023108 244 AWDDQWIFWVGPFIGAAIAALYHQFILRA 272 (287)
Q Consensus 244 ~~~~~wvy~v~p~lGa~~a~~~y~~~~~~ 272 (287)
.|.+.|+||++|++|+++|+++++.++..
T Consensus 119 ~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~ 147 (274)
T PLN00183 119 PWSKVPLYITAQTVGSVLATYVGVSVYGV 147 (274)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999888754
No 20
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.56 E-value=1.3e-14 Score=127.21 Aligned_cols=98 Identities=22% Similarity=0.244 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHHHH
Q 023108 35 WSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 114 (287)
Q Consensus 35 ~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~ 114 (287)
.+.+|.++.|+++|+++++.++......... . .....++.+|+.+...+++.+++||+|+|||++++.
T Consensus 127 ~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~~--~----------~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~ 194 (228)
T cd00333 127 VSNGNAFFVEFIGTFILVLVVFATTDDPNGP--P----------PGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGP 194 (228)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccccccC--C----------CCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHH
Confidence 5788999999999999999888754311110 0 112267888999999999999999999999999999
Q ss_pred HHhcCC--chhHHHHHHHHHhHHHHHhhhhhh
Q 023108 115 FLARKV--SLVRAVMYMVAQCLGAICGCGLVK 144 (287)
Q Consensus 115 ~~~g~~--~~~~~~~yi~aQ~lGa~~g~~~~~ 144 (287)
++.++. +|.+.|+||++|++|+++|+++.+
T Consensus 195 ~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~ 226 (228)
T cd00333 195 ALFTGLARHWHYFWVYWVGPLIGAIAGALVYD 226 (228)
T ss_pred HHHhccccccceeehhhhHHHHHHHHHHHHHH
Confidence 999998 799999999999999999998754
No 21
>PLN00166 aquaporin TIP2; Provisional
Probab=99.55 E-value=1.1e-14 Score=128.86 Aligned_cols=106 Identities=20% Similarity=0.343 Sum_probs=86.3
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhcCCC--CCC--C-CCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhc
Q 023108 165 YSTGAGLGAEIIGTFVLVYTVFSATDPK--RKA--R-DPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIY 239 (287)
Q Consensus 165 ~s~~~~f~~E~l~T~~L~~~vl~~~~~~--~~~--~-~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~ 239 (287)
.+..+.++.|+++|++|+++.+...... ... . ........++.+|+.+.+.+++++.+||+++||||++++.+.
T Consensus 15 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~- 93 (250)
T PLN00166 15 VASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIG- 93 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHh-
Confidence 4557889999999999999998764431 110 0 111123468889999999999999999999999999999996
Q ss_pred CCCCCCCcccccchhhHHHHHHHHHHHHHHccc
Q 023108 240 NKDKAWDDQWIFWVGPFIGAAIAALYHQFILRA 272 (287)
Q Consensus 240 ~~~~~~~~~wvy~v~p~lGa~~a~~~y~~~~~~ 272 (287)
++..|.+.|+||++|++|+++|+.+++.++..
T Consensus 94 -g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~ 125 (250)
T PLN00166 94 -GNITIITGFFYWIAQCLGSIVACLLLVFVTNG 125 (250)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45679999999999999999999999988754
No 22
>PLN00167 aquaporin TIP5; Provisional
Probab=99.54 E-value=2.2e-14 Score=127.21 Aligned_cols=106 Identities=22% Similarity=0.382 Sum_probs=87.1
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhcCCCCC--C---CCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhc
Q 023108 165 YSTGAGLGAEIIGTFVLVYTVFSATDPKRK--A---RDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIY 239 (287)
Q Consensus 165 ~s~~~~f~~E~l~T~~L~~~vl~~~~~~~~--~---~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~ 239 (287)
.+..+.++.|+++|++|+++.++....++. . ..+......++.+|+++.+.+++++.+||+++|||+++++.+.
T Consensus 19 ~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~~- 97 (256)
T PLN00167 19 RNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAVG- 97 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHHh-
Confidence 345688999999999999999876553321 0 1111134679999999999999999999999999999999997
Q ss_pred CCCCCCCcccccchhhHHHHHHHHHHHHHHccc
Q 023108 240 NKDKAWDDQWIFWVGPFIGAAIAALYHQFILRA 272 (287)
Q Consensus 240 ~~~~~~~~~wvy~v~p~lGa~~a~~~y~~~~~~ 272 (287)
++..|.+.|+||++|++|+++|+.+++.++..
T Consensus 98 -g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 129 (256)
T PLN00167 98 -GHISVPTAMFYWISQMLASVMACLFLKVTTVG 129 (256)
T ss_pred -CCCcHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45679999999999999999999988887644
No 23
>PRK05420 aquaporin Z; Provisional
Probab=99.50 E-value=6e-14 Score=122.91 Aligned_cols=103 Identities=21% Similarity=0.177 Sum_probs=81.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCC-CCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCC
Q 023108 168 GAGLGAEIIGTFVLVYTVFSATDPKRKARDPH-VPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWD 246 (287)
Q Consensus 168 ~~~f~~E~l~T~~L~~~vl~~~~~~~~~~~~~-~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~ 246 (287)
.+.++.|+++|++|+++.+......+...++. .....++.+|+++.+.+++++.+||+|+|||+++++.+. ++..|.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~--~~i~~~ 79 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAG--GRFPAK 79 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHh--CCCCHH
Confidence 46789999999999998876432111111111 122358999999999999999999999999999999997 466899
Q ss_pred cccccchhhHHHHHHHHHHHHHHccc
Q 023108 247 DQWIFWVGPFIGAAIAALYHQFILRA 272 (287)
Q Consensus 247 ~~wvy~v~p~lGa~~a~~~y~~~~~~ 272 (287)
+.|+||++|++|+++|+.+.+.++.+
T Consensus 80 ~~~~Y~~aQ~lGa~~ga~l~~~~~~~ 105 (231)
T PRK05420 80 ELVPYIIAQVVGGIAAAAVLYLIASG 105 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999776666644
No 24
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.50 E-value=4.8e-14 Score=127.48 Aligned_cols=104 Identities=21% Similarity=0.287 Sum_probs=84.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCC
Q 023108 167 TGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWD 246 (287)
Q Consensus 167 ~~~~f~~E~l~T~~L~~~vl~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~ 246 (287)
..+.++.|+++|++|+++.++..........+......++.+|+++.+..++.+.+||+|+|||+++++.+. ++..|.
T Consensus 49 ~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~--g~i~~~ 126 (294)
T PTZ00016 49 NVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVF--GKFPWK 126 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHh--ccCCHH
Confidence 457899999999999998887654322111111133468899999999999999999999999999999997 456899
Q ss_pred cccccchhhHHHHHHHHHHHHHHccc
Q 023108 247 DQWIFWVGPFIGAAIAALYHQFILRA 272 (287)
Q Consensus 247 ~~wvy~v~p~lGa~~a~~~y~~~~~~ 272 (287)
+.|+||++|++|+++|+++...++.+
T Consensus 127 ~~~~YiiaQ~lGa~~ga~ll~~~~~~ 152 (294)
T PTZ00016 127 KLPGYFVAQLLGAFVGAACVYGLYYG 152 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999887777765
No 25
>PLN00027 aquaporin TIP; Provisional
Probab=99.50 E-value=1.1e-13 Score=122.83 Aligned_cols=105 Identities=23% Similarity=0.368 Sum_probs=83.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcC--CC--CCCCC-CCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcC
Q 023108 166 STGAGLGAEIIGTFVLVYTVFSATD--PK--RKARD-PHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYN 240 (287)
Q Consensus 166 s~~~~f~~E~l~T~~L~~~vl~~~~--~~--~~~~~-~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~ 240 (287)
...+.++.|+++|++|+++.++... ++ ..... .......++.+|+++.+.+++.+.+||+++||||++++.+.
T Consensus 18 ~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~-- 95 (252)
T PLN00027 18 DALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIG-- 95 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHh--
Confidence 3468899999999999999886531 11 11100 11123579999999999999999999999999999999985
Q ss_pred CCCCCCcccccchhhHHHHHHHHHHHHHHccc
Q 023108 241 KDKAWDDQWIFWVGPFIGAAIAALYHQFILRA 272 (287)
Q Consensus 241 ~~~~~~~~wvy~v~p~lGa~~a~~~y~~~~~~ 272 (287)
++..|.+.|+||++|++|+++|+++++++...
T Consensus 96 g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 127 (252)
T PLN00027 96 GNITLLRGILYWIAQLLGSVVACLLLKFSTGG 127 (252)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45678999999999999999999999877643
No 26
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.46 E-value=1.2e-13 Score=120.00 Aligned_cols=96 Identities=23% Similarity=0.238 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHHHH
Q 023108 35 WSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 114 (287)
Q Consensus 35 ~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~ 114 (287)
.+.++.++.|+++|+++++..+.+... .+... . ....++.+|+.+...++..+++||+|+|||++++.
T Consensus 119 ~~~~~~~~~E~i~T~~lv~~~~~~~~~--~~~~~--------~--~~~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~ 186 (216)
T TIGR00861 119 VSSGQAFFVEFIGTAILVLVIFATTDP--RNRVP--------R--GGFAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGP 186 (216)
T ss_pred ccHHHHHHHHHHHHHHHHHHHheeecC--CCCCC--------C--CccHHHHHHHHHHHHHHhCCCCcccccCchhhhhH
Confidence 477899999999999999988765432 11100 0 01268889999999999999999999999999999
Q ss_pred HHhc-CCchhHHHHHHHHHhHHHHHhhhh
Q 023108 115 FLAR-KVSLVRAVMYMVAQCLGAICGCGL 142 (287)
Q Consensus 115 ~~~g-~~~~~~~~~yi~aQ~lGa~~g~~~ 142 (287)
++.+ ..+|.+.|+|+++|++|+++++.+
T Consensus 187 ~l~~~~~~~~~~~vy~vap~~Ga~~a~~~ 215 (216)
T TIGR00861 187 ALFAGLAGWGNHWVYWVGPIIGAILGALV 215 (216)
T ss_pred HHHhccccccceeHHHHHHHHHHHHHHHh
Confidence 9976 578999999999999999998865
No 27
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.39 E-value=2.9e-13 Score=119.45 Aligned_cols=106 Identities=24% Similarity=0.274 Sum_probs=84.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCC-CCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCC
Q 023108 166 STGAGLGAEIIGTFVLVYTVFSATDPKRKARDP-HVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKA 244 (287)
Q Consensus 166 s~~~~f~~E~l~T~~L~~~vl~~~~~~~~~~~~-~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~ 244 (287)
...|.+++||++|++|++.-++++.+..-.+.. +...-..+.+|++++..+++.+.+||+|+|||++++..++ ++..
T Consensus 30 ~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~--g~~p 107 (316)
T KOG0224|consen 30 ELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCIL--GRLP 107 (316)
T ss_pred HHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHh--cCCC
Confidence 346789999999999999888765544332211 1123457899999999999999999999999999999998 5679
Q ss_pred CCcccccchhhHHHHHHHHHHHHHHcccc
Q 023108 245 WDDQWIFWVGPFIGAAIAALYHQFILRAS 273 (287)
Q Consensus 245 ~~~~wvy~v~p~lGa~~a~~~y~~~~~~~ 273 (287)
|.+..+|.++|++||++|+...-.++.+.
T Consensus 108 ~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~ 136 (316)
T KOG0224|consen 108 WKKFPVYVLAQFIGAFLGAATVYGLYYDA 136 (316)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986544444444
No 28
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.32 E-value=3e-12 Score=111.54 Aligned_cols=108 Identities=21% Similarity=0.219 Sum_probs=83.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHhc---CCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCC
Q 023108 167 TGAGLGAEIIGTFVLVYTVFSAT---DPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDK 243 (287)
Q Consensus 167 ~~~~f~~E~l~T~~L~~~vl~~~---~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~ 243 (287)
..+.++.|+++|++|++...+.. .-++............+.+|+.+.+.+++.+++||+|+|||++++.++. +..
T Consensus 4 ~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~--g~f 81 (241)
T COG0580 4 LTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVR--GRF 81 (241)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHh--CCC
Confidence 34567999999999999666321 1111111111134479999999999999999999999999999999997 467
Q ss_pred CCCcccccchhhHHHHHHHHHHHHHHccccccc
Q 023108 244 AWDDQWIFWVGPFIGAAIAALYHQFILRASASK 276 (287)
Q Consensus 244 ~~~~~wvy~v~p~lGa~~a~~~y~~~~~~~~~~ 276 (287)
.|++...||++|++|+++|+.+...++.++..+
T Consensus 82 p~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~ 114 (241)
T COG0580 82 PWRKVLPYIVAQVLGAFAGAALLYLLYYGKILE 114 (241)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 899999999999999999998777777665433
No 29
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.29 E-value=8.5e-12 Score=108.93 Aligned_cols=107 Identities=23% Similarity=0.249 Sum_probs=87.6
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCC
Q 023108 165 YSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKA 244 (287)
Q Consensus 165 ~s~~~~f~~E~l~T~~L~~~vl~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~ 244 (287)
.+..|.++.||++|++++++.+.......+...+..-....+..|+.+++.+++.+.+||+|+|||.+++..+. ++..
T Consensus 8 ~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~--~~is 85 (238)
T KOG0223|consen 8 VSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVG--GKIS 85 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHh--CCCc
Confidence 45678999999999999998886443322111111123468999999999999999999999999999999997 4578
Q ss_pred CCcccccchhhHHHHHHHHHHHHHHcccc
Q 023108 245 WDDQWIFWVGPFIGAAIAALYHQFILRAS 273 (287)
Q Consensus 245 ~~~~wvy~v~p~lGa~~a~~~y~~~~~~~ 273 (287)
+.+...||++|++|+++|+.+.+.+++.+
T Consensus 86 l~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~ 114 (238)
T KOG0223|consen 86 LFRAVAYIVAQLLGAIAGAALLKVVTPGQ 114 (238)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHheecCcc
Confidence 88999999999999999999999888774
No 30
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.20 E-value=1.1e-11 Score=108.36 Aligned_cols=106 Identities=25% Similarity=0.341 Sum_probs=82.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhc---CCCCCCCC-C--CCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhc
Q 023108 166 STGAGLGAEIIGTFVLVYTVFSAT---DPKRKARD-P--HVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIY 239 (287)
Q Consensus 166 s~~~~f~~E~l~T~~L~~~vl~~~---~~~~~~~~-~--~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~ 239 (287)
+..|.++.|+++|+++++...... ........ + ......++.+|+.+.+.++..+++||+|+|||.+++..+.
T Consensus 6 ~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~~l~- 84 (227)
T PF00230_consen 6 SLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAFALT- 84 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhheeee-
Confidence 457889999999999998777522 11111110 0 0122456678999999999999999999999999999997
Q ss_pred CCCCCCCcccccchhhHHHHHHHHHHHHHHcccc
Q 023108 240 NKDKAWDDQWIFWVGPFIGAAIAALYHQFILRAS 273 (287)
Q Consensus 240 ~~~~~~~~~wvy~v~p~lGa~~a~~~y~~~~~~~ 273 (287)
++..|.+...|+++|++|+++|+.+.+.++++.
T Consensus 85 -g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~ 117 (227)
T PF00230_consen 85 -GRISWKKAIVYIIAQFLGAFLGALLVYALYPDS 117 (227)
T ss_dssp -TSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHH
T ss_pred -eeecccceeeEEeeccccccccccchhhcccCc
Confidence 567899999999999999999999988888774
No 31
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=95.56 E-value=1 Score=40.20 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhh-hhcCCC
Q 023108 79 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYY-TRYGGG 157 (287)
Q Consensus 79 ~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~-~~~~~~ 157 (287)
..+.-++++++.+.+.+++-+..-=+ |--........++++|++.+--|+-=.+|=++|+.++..++.-.- .....+
T Consensus 63 ~~lvg~~~F~~GLilVv~~g~ELfT~--n~m~~t~~~~~k~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~ 140 (265)
T COG2116 63 AKLVGGLVFSLGLILVVIAGSELFTS--NTMLLTVGVLSKKISWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTANG 140 (265)
T ss_pred HHHHHHHHHHHHHHHhhhhCcccccc--chhHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 44555666666665556554442211 433444455678999999988888777888888877655552110 001111
Q ss_pred ccc--------cCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccc
Q 023108 158 ANE--------LADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINP 229 (287)
Q Consensus 158 ~~~--------~~~~~s~~~~f~~E~l~T~~L~~~vl~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNP 229 (287)
... -.-+.+..+.|.--.++.++.++.++..-.-|... .. .+++...+..++..++.=...|-
T Consensus 141 ~~~~~~~~~a~~K~~~t~~~~F~~GI~cN~lVclAvwm~~~~k~~~-----~K----~~~m~~pv~~Fv~~GfeH~VANm 211 (265)
T COG2116 141 QWGLFVLGVAEHKLHHTFLEAFAKGILCNWLVCLAVWMSYSAKDGA-----AK----IFAIILPVMLFVASGFEHSVANM 211 (265)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhcccchh-----hH----HHHHHHHHHHHHHcCCceeeehH
Confidence 110 01123446677777888888777777544322211 11 22222222333444444344553
Q ss_pred cccHHHHHhcCCCCCCCc-cc---cc-chhhHHH-HHHHHHHHHHHcccccccc
Q 023108 230 ARSFGPAVIYNKDKAWDD-QW---IF-WVGPFIG-AAIAALYHQFILRASASKA 277 (287)
Q Consensus 230 Ar~lg~~i~~~~~~~~~~-~w---vy-~v~p~lG-a~~a~~~y~~~~~~~~~~~ 277 (287)
..-. ......+...|.+ .| ++ .+|.++| +++-++.|+++++.+.+++
T Consensus 212 ~~i~-~~~~~~~~~~~~~fi~~Nlipv~lGNivGG~v~vgl~Y~~~~~~~~~~~ 264 (265)
T COG2116 212 FMIP-WAAVFSGALTWADFILKNLIPVTLGNIVGGAVFVGLMYWYLYRKQNRYK 264 (265)
T ss_pred HHHH-HHHHcCChhhhHHHHHHHHHHHHHhchhcchhhhhHHHHHhcccccccC
Confidence 2211 2222223445555 22 22 3577776 4557889999998876543
No 32
>PRK11562 nitrite transporter NirC; Provisional
Probab=95.42 E-value=1.9 Score=38.72 Aligned_cols=190 Identities=7% Similarity=0.004 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHhcCccccccchHHHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchh---hhhcCCCc-
Q 023108 83 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSY---YTRYGGGA- 158 (287)
Q Consensus 83 ~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~---~~~~~~~~- 158 (287)
.+..+++.+.+.++.-+..- -=|-.......+.|+.+|++.+--|.-=.+|=++|+.++-.+.... ........
T Consensus 61 ~g~~F~~GLilVi~~G~eLF--Tgn~~~~~~~~~~~~~s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~~~~~~~ 138 (268)
T PRK11562 61 MGATFGIALTLVIIAGSELF--TGHTMFLTFGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTSIV 138 (268)
T ss_pred HHHHHHHHHHHHHHhCcccc--ccchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHH
Confidence 44455555555554433321 1144444456677889999888777777777777776654443211 00000000
Q ss_pred ---cccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHH
Q 023108 159 ---NELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGP 235 (287)
Q Consensus 159 ---~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~ 235 (287)
....-+.+..+.|+-=++|.++..+.++.....+. . ..+..+.+...++ ...+..=...|=- -+..
T Consensus 139 ~~ia~~K~~~~~~~~f~~gI~CNwLVclavw~~~~~~~--~----gKi~~i~~pI~~F----v~~GFEH~IANm~-~~~l 207 (268)
T PRK11562 139 HSVALAKTTAPAMVLFFKGALCNWLVCLAIWMAIRTEG--A----AKFIAIWWCLLAF----IASGYEHSVANMT-LFAL 207 (268)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccc--c----chhHHHHHHHHHH----HHcCCcchhHhHH-HHHH
Confidence 00011245567787778888888887775443221 1 1122222222222 2222222334411 2323
Q ss_pred HHhcCC--CCCCC---ccccc-chhhHHHH-HHHHHHHHHHccccccccccCccCCC
Q 023108 236 AVIYNK--DKAWD---DQWIF-WVGPFIGA-AIAALYHQFILRASASKALGSRRSSS 285 (287)
Q Consensus 236 ~i~~~~--~~~~~---~~wvy-~v~p~lGa-~~a~~~y~~~~~~~~~~~~~~~~~~~ 285 (287)
.++... ...|. +.+++ .+|.++|+ ++-++.|.++.+++...+..++++.|
T Consensus 208 ~~~~~~~~~~~~~~~~~nlipvtLGNivGG~v~vg~~y~~~~~~~~~~~~~~~~~~~ 264 (268)
T PRK11562 208 SWFGHHSEAYTLAGIGHNLLWVTLGNTLSGAVFMGLGYWYATPKANRPVAAKFNQTE 264 (268)
T ss_pred HHHccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCchhhhHhhhh
Confidence 333111 11221 12233 47899988 56778888899888777777766655
No 33
>PRK10805 formate transporter; Provisional
Probab=94.82 E-value=3 Score=37.80 Aligned_cols=105 Identities=11% Similarity=0.124 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHhcC-ccccccchHHHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcc--hhhhhcCCC
Q 023108 81 LGIAWAFGGMIFVLVYCTAG-ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQK--SYYTRYGGG 157 (287)
Q Consensus 81 ~~~~~~~g~~~~~~i~~~~~-iSGah~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~--~~~~~~~~~ 157 (287)
+..++.+.+.+.+.++.-+. .+| |-..++ ..+.||.+|.+.+-.|.-=.+|=++|++++-.+.. ......++.
T Consensus 69 ll~~~~F~vGlilIvl~g~eLFTg---n~l~~~-~~~~~~~~~~~~lr~w~iv~~GNliGal~~a~l~~~s~~~~~~~~~ 144 (285)
T PRK10805 69 LVGGICFSLGLILCVVCGADLFTS---TVLIVV-AKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQ 144 (285)
T ss_pred HHHHHHHHHHHHHHHHhCcccchh---hHHHHH-HHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCccH
Confidence 33455555555545544433 334 555554 36788999998885555555555555544322221 100000000
Q ss_pred -------ccccCCCCcchhhHHHHHHHHHHHHHHHHHhc
Q 023108 158 -------ANELADGYSTGAGLGAEIIGTFVLVYTVFSAT 189 (287)
Q Consensus 158 -------~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~ 189 (287)
.....-+.+.++.|+-=++|.++.++.++...
T Consensus 145 ~~~~~~~~a~~K~~~~~~~~f~~gI~CN~lVclaV~~~~ 183 (285)
T PRK10805 145 WGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSY 183 (285)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001134566778777888888888777543
No 34
>TIGR00790 fnt formate/nitrite transporter. symport. HCO2 - efflux may be driven by the membrane potential by a uniport mechanism or by H+ antiport.
Probab=77.82 E-value=48 Score=29.09 Aligned_cols=81 Identities=15% Similarity=0.086 Sum_probs=47.2
Q ss_pred chHHHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhh-cCC-C-------ccccCCCCcchhhHHHHHHH
Q 023108 107 NPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTR-YGG-G-------ANELADGYSTGAGLGAEIIG 177 (287)
Q Consensus 107 NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~-~~~-~-------~~~~~~~~s~~~~f~~E~l~ 177 (287)
|-......++.||.+|.+.+-.|.-=.+|=++|+.++-.+....-.. .+. . ......+.+..+.|+--+++
T Consensus 68 n~~~~~~~~~~~~~~~~~~l~~w~~~~~gNlvG~~~~a~l~~~~~~~~~~~~~~~~~~~~~a~~K~~~~~~~~f~~gilc 147 (239)
T TIGR00790 68 NTLFVTMALLRGKISWGDLLINWVVSWLGNLVGALFVAYLFSYLGGILTANGPWGVGSLAIAEHKAHHTFVEAFFLGILC 147 (239)
T ss_pred chHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCccHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 44444445678999999988887777777777776654443211000 000 0 00011234566777777888
Q ss_pred HHHHHHHHHH
Q 023108 178 TFVLVYTVFS 187 (287)
Q Consensus 178 T~~L~~~vl~ 187 (287)
.++..+.++.
T Consensus 148 n~lV~lav~~ 157 (239)
T TIGR00790 148 NWLVCLAVWM 157 (239)
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 35
>PRK09713 focB putative formate transporter; Provisional
Probab=77.39 E-value=56 Score=29.59 Aligned_cols=103 Identities=9% Similarity=-0.002 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHhcCccccccchHHHHHHHHhcCCchhHHHHHHH----HHhHHHHHhhhhhhhhcchhhhhcCCC-
Q 023108 83 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMV----AQCLGAICGCGLVKAFQKSYYTRYGGG- 157 (287)
Q Consensus 83 ~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~~yi~----aQ~lGa~~g~~~~~~~~~~~~~~~~~~- 157 (287)
.++.+.+.+.+.++.-+..-=+ |=.. +.....|+.+|++.+-.|. +-++|+++-+.+++.. ......+..
T Consensus 70 ~g~~F~vGLilIv~~g~ELfTg--N~~~-~~~~~~~~i~~~~~l~~w~iv~~GNlvGal~~A~l~~~s--~~~~~~~~~~ 144 (282)
T PRK09713 70 GGLCFTLGFILLAVCGTSLFTS--SVMT-VMAKSRGVISWRTWLINALLVACGNLAGIACFSLLIWFS--GLVMSENAMW 144 (282)
T ss_pred HHHHHHHHHHHHHHhCccccHH--HHHH-HHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccccccchhH
Confidence 4455555555555443332212 2222 2335678889888885444 4455555444443221 111000000
Q ss_pred ------ccccCCCCcchhhHHHHHHHHHHHHHHHHHhcC
Q 023108 158 ------ANELADGYSTGAGLGAEIIGTFVLVYTVFSATD 190 (287)
Q Consensus 158 ------~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~~ 190 (287)
.....-+.+.++.|+--++|-++.++.++....
T Consensus 145 ~~~~~~ia~~K~~~~~~~~F~~gI~CN~lVclaV~~~~~ 183 (282)
T PRK09713 145 GVAVLHCAEGKMHHTFTESVSLGIMCNLMVCLALWMSYC 183 (282)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000012346678888888899888888875443
No 36
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=76.86 E-value=53 Score=29.07 Aligned_cols=112 Identities=14% Similarity=0.027 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCC-
Q 023108 79 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGG- 157 (287)
Q Consensus 79 ~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~- 157 (287)
..+..++.+++.+.+.++.-+..- -=|-.+....++.|+.+|++.+--|.-=.+|=++|+.++-.+....-...+.+
T Consensus 56 ~~l~~g~~F~~Gl~lIv~~g~eLf--Tgn~~~~~~~~~~~~~~~~~~l~~w~~v~~gNliG~~~~a~l~~~~~~~~~~~~ 133 (250)
T PF01226_consen 56 AKLVGGLVFPIGLVLIVFLGGELF--TGNMMVMTLALLNKRISWKKLLRNWGIVYLGNLIGALLFAYLFAFSGGFMSSPA 133 (250)
T ss_dssp HHHHHHHHHTHHHHHHHHHT---T--TTTCHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGTTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcchhc--ccchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHH
Confidence 344456666666655555544432 22666666677889999999877776666666666665444432110000000
Q ss_pred -------ccccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCC
Q 023108 158 -------ANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPK 192 (287)
Q Consensus 158 -------~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~~~~ 192 (287)
.....-..+.++.|+-=.++.++..+.++.....|
T Consensus 134 ~~~~~~~~a~~K~~~~~~~~f~~gI~cN~lVclav~~~~~~~ 175 (250)
T PF01226_consen 134 MGEYLISVAEHKVSHTFWELFFRGILCNWLVCLAVWLAFAAK 175 (250)
T ss_dssp HHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHCT-S
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00011234567788888888988888888665443
No 37
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=63.21 E-value=1.7e+02 Score=29.32 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=36.4
Q ss_pred HHHhcCccccccch---HHHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcch
Q 023108 95 VYCTAGISGGHINP---AVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKS 149 (287)
Q Consensus 95 i~~~~~iSGah~NP---avTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~ 149 (287)
+|..-+-++|+.-. +|..+.+....-|......++.+.++|+.+|....+.+++.
T Consensus 356 ~Wi~t~W~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~ 413 (650)
T PF04632_consen 356 FWIATGWPSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPH 413 (650)
T ss_pred HHHHcCCChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34433434454433 33333334445588899999999999999999888888764
No 38
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=45.13 E-value=8.4 Score=29.97 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=17.7
Q ss_pred cCccccccchHHHHHHHHhcC
Q 023108 99 AGISGGHINPAVTFGLFLARK 119 (287)
Q Consensus 99 ~~iSGah~NPavTla~~~~g~ 119 (287)
..-|+||+||.+.++-.+.++
T Consensus 5 ~~Gt~Ghv~P~lala~~L~~r 25 (139)
T PF03033_consen 5 TGGTRGHVYPFLALARALRRR 25 (139)
T ss_dssp EESSHHHHHHHHHHHHHHHHT
T ss_pred EcCChhHHHHHHHHHHHHhcc
Confidence 345789999999999999865
No 39
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=42.01 E-value=6.6 Score=36.53 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=18.9
Q ss_pred HhcCccccccchHHHHHHHHhc
Q 023108 97 CTAGISGGHINPAVTFGLFLAR 118 (287)
Q Consensus 97 ~~~~iSGah~NPavTla~~~~g 118 (287)
.+++-||||+.||++++-.+..
T Consensus 6 ~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 6 FTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred EEcCCcHHHHHHHHHHHHHHHh
Confidence 4567889999999999988875
No 40
>COG0730 Predicted permeases [General function prediction only]
Probab=30.01 E-value=3.4e+02 Score=23.57 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=25.5
Q ss_pred HHhcCCchhHHHHHHHHHhHHHHHhhhhhhhh
Q 023108 115 FLARKVSLVRAVMYMVAQCLGAICGCGLVKAF 146 (287)
Q Consensus 115 ~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~ 146 (287)
+-.++.+|+....+..+=++|+++|+.+...+
T Consensus 66 ~k~~~v~~~~~~~l~~~~~~G~~lG~~l~~~~ 97 (258)
T COG0730 66 LKRGNVDWKLALILLLGALIGAFLGALLALLL 97 (258)
T ss_pred HHcCCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33467789999999999999999997665544
No 41
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=27.50 E-value=86 Score=21.76 Aligned_cols=31 Identities=23% Similarity=0.608 Sum_probs=19.3
Q ss_pred cccHHHHHhcCCCCCCCcccccchhhHHHHHHHH
Q 023108 230 ARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAA 263 (287)
Q Consensus 230 Ar~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~ 263 (287)
..++|-++..+.+...+. +-||+| +|+++|-
T Consensus 9 ~~tlG~~vL~~rG~~~~~-~WyWIg--vgaL~G~ 39 (65)
T PF08370_consen 9 NSTLGVAVLKSRGLFTES-YWYWIG--VGALLGF 39 (65)
T ss_pred CCcHHHHHHHHcCCCCCC-cEEeeh--HHHHHHH
Confidence 478888887543333334 448876 5666664
No 42
>PF03842 Silic_transp: Silicon transporter; InterPro: IPR004693 Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterised member of the family (Sit1) functions in the energy-dependent uptake of either silicic acid [Si(OH)4] or silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms, which make their "glass houses" out of silicon.
Probab=25.28 E-value=5.8e+02 Score=24.60 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHhcCccccccchHHHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcch----hhhhcCCCc
Q 023108 83 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKS----YYTRYGGGA 158 (287)
Q Consensus 83 ~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~----~~~~~~~~~ 158 (287)
+=+..|+...+.....|..+ .+.|-+-+.--++...+-....+.-+.-++-|-+=++.+++.+... ...+++.+.
T Consensus 137 IFL~~GlaMil~t~~lGQLt-tQVNAshcMlDyINnyFalFTlyvam~IEfsGvmHssYLIq~i~~~~sGKPI~SNE~Pr 215 (512)
T PF03842_consen 137 IFLDIGLAMILFTCVLGQLT-TQVNASHCMLDYINNYFALFTLYVAMAIEFSGVMHSSYLIQNILSALSGKPIESNEPPR 215 (512)
T ss_pred HhhccchHHHHHHHhhcccc-HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCcccCCCcc
Confidence 44455655555555666655 6788888888888777777777888888888888877776655432 222222111
Q ss_pred cccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 023108 159 NELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKAR 196 (287)
Q Consensus 159 ~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~~~~~~~~ 196 (287)
+....-+-+.|.+++=.+..|.+..++-+..+.+....
T Consensus 216 tg~~~~FFWgRvlmSl~ILgF~lAVtl~ALf~G~Ttmw 253 (512)
T PF03842_consen 216 TGFQFAFFWGRVLMSLAILGFCLAVTLVALFNGKTTMW 253 (512)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceec
Confidence 11111122345556656666666665555555554433
No 43
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=22.66 E-value=4e+02 Score=21.26 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhh-----CCCCCcccccccHHHHHh
Q 023108 168 GAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATI-----PVTGTGINPARSFGPAVI 238 (287)
Q Consensus 168 ~~~f~~E~l~T~~L~~~vl~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~-----~~sG~~lNPAr~lg~~i~ 238 (287)
..+++.-++.+.+....++....+. +....+.+++.+.+..+..| +.+|-..=-..|++.+..
T Consensus 4 v~aLliKf~~~~ivl~i~L~~~~~~--------sf~~~l~~sl~ltvvaY~iGDl~ILPr~gN~~AtiaD~~La~~ 71 (136)
T PF10710_consen 4 VKALLIKFVMTIIVLYIILGLFFGA--------SFGDILLISLVLTVVAYLIGDLFILPRTGNIVATIADFGLAFL 71 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHHHHHHHHHheeeCCCChhHHHHHHHHHHH
Confidence 4567888888888888777644321 33456677777777766554 334444444456665543
No 44
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=20.76 E-value=1.8e+02 Score=22.11 Aligned_cols=46 Identities=17% Similarity=0.400 Sum_probs=35.7
Q ss_pred ccccchHHHHHHHH-hcCC-chhHHHHHHHHHhHHHHHhhhhhhhhcc
Q 023108 103 GGHINPAVTFGLFL-ARKV-SLVRAVMYMVAQCLGAICGCGLVKAFQK 148 (287)
Q Consensus 103 Gah~NPavTla~~~-~g~~-~~~~~~~yi~aQ~lGa~~g~~~~~~~~~ 148 (287)
||.+.|-..+--=+ .|.. +..|-.+|+++-++||=.|..+++.+.+
T Consensus 53 GGTfd~~~~iE~g~~~G~~~~~~KQ~l~Il~Af~GA~~g~~lI~wl~~ 100 (102)
T PF14034_consen 53 GGTFDTFRSIEKGFFEGELSDIIKQLLYILSAFLGAHTGYILIRWLTG 100 (102)
T ss_pred hcCchHHHHHHhHhcCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 67788777776644 3443 5778999999999999999998877644
Done!