Query 023108
Match_columns 287
No_of_seqs 213 out of 1387
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 16:30:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cn5_A Aquaporin; membrane pro 100.0 3.6E-63 1.2E-67 446.0 19.0 281 1-287 24-304 (304)
2 3iyz_A Aquaporin-4; water tran 100.0 3.1E-54 1.1E-58 390.0 23.9 245 15-274 24-273 (340)
3 3gd8_A Aquaporin-4; proton exc 100.0 1.9E-52 6.5E-57 362.7 22.4 222 36-272 2-223 (223)
4 1j4n_A Aquaporin 1; membrane p 100.0 6.9E-52 2.3E-56 368.8 22.9 235 30-274 3-237 (271)
5 3d9s_A Aquaporin-5, AQP-5; aqu 100.0 5.4E-52 1.8E-56 368.1 21.8 228 28-274 2-230 (266)
6 2zz9_A Aquaporin-4; water tran 100.0 5.1E-52 1.7E-56 372.7 21.8 232 28-274 3-234 (301)
7 3llq_A Aquaporin Z 2; aquapori 100.0 4.6E-52 1.6E-56 365.4 19.2 223 33-270 25-253 (256)
8 2b6o_A Aquaporin-0, lens fiber 100.0 1E-50 3.5E-55 359.8 23.7 226 30-274 2-227 (263)
9 1ldf_A Glycerol uptake facilit 100.0 3.9E-51 1.3E-55 366.1 19.6 229 35-275 5-260 (281)
10 2w2e_A AQY1, aquaporin, aquapo 100.0 1E-50 3.5E-55 361.9 21.6 227 35-276 42-270 (279)
11 2o9g_A Aquaporin Z; integral m 100.0 1.4E-50 4.8E-55 353.6 20.8 222 37-273 4-233 (234)
12 3c02_A Aquaglyceroporin; membr 100.0 4.7E-51 1.6E-55 361.4 15.6 232 34-277 6-249 (258)
13 2f2b_A Aquaporin AQPM; protein 100.0 1.6E-49 5.6E-54 349.6 21.6 231 36-271 3-245 (246)
14 2f2b_A Aquaporin AQPM; protein 99.6 3.6E-15 1.2E-19 130.7 9.9 100 35-148 141-245 (246)
15 2b6o_A Aquaporin-0, lens fiber 99.6 3E-15 1E-19 132.3 9.2 106 166-275 8-113 (263)
16 3d9s_A Aquaporin-5, AQP-5; aqu 99.5 3.6E-14 1.2E-18 125.4 7.3 104 166-273 10-113 (266)
17 3gd8_A Aquaporin-4; proton exc 99.5 5.8E-14 2E-18 121.2 8.4 107 167-275 3-111 (223)
18 2zz9_A Aquaporin-4; water tran 99.5 2.2E-13 7.7E-18 122.0 11.5 108 166-275 11-120 (301)
19 3llq_A Aquaporin Z 2; aquapori 99.5 8.1E-14 2.8E-18 122.2 7.0 105 165-271 27-132 (256)
20 1j4n_A Aquaporin 1; membrane p 99.4 1.4E-13 4.6E-18 122.2 7.9 105 167-273 10-121 (271)
21 3iyz_A Aquaporin-4; water tran 99.4 1E-13 3.5E-18 125.4 7.2 107 166-274 50-158 (340)
22 2o9g_A Aquaporin Z; integral m 99.4 2.2E-13 7.4E-18 118.4 6.4 105 167-273 4-109 (234)
23 3c02_A Aquaglyceroporin; membr 99.4 1.4E-13 4.8E-18 121.3 5.1 105 166-274 8-114 (258)
24 1ldf_A Glycerol uptake facilit 99.4 2E-13 7E-18 121.7 5.4 106 166-273 6-111 (281)
25 3cn5_A Aquaporin; membrane pro 99.4 3.3E-13 1.1E-17 121.1 5.6 106 166-273 59-167 (304)
26 2w2e_A AQY1, aquaporin, aquapo 99.3 4.1E-12 1.4E-16 112.9 9.0 103 35-151 166-268 (279)
27 3kcu_A Probable formate transp 93.6 1.3 4.6E-05 38.8 13.1 110 80-192 68-186 (285)
28 3tds_E Formate/nitrite transpo 89.8 1.5 5.3E-05 38.0 8.9 184 80-276 64-262 (268)
29 3kly_A Putative formate transp 86.7 7.8 0.00027 33.7 11.5 107 80-191 67-184 (280)
30 3s2u_A UDP-N-acetylglucosamine 50.7 2 6.7E-05 38.6 -1.5 22 98-119 8-29 (365)
31 4fc4_A Nitrite transporter NIR 42.8 1.6E+02 0.0053 25.1 13.1 107 81-190 59-173 (261)
No 1
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=100.00 E-value=3.6e-63 Score=446.04 Aligned_cols=281 Identities=75% Similarity=1.267 Sum_probs=210.1
Q ss_pred CCcccccccccccCCCCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchh
Q 023108 1 MAKDIEVGREGEFHDKDYHDPPPAPLIGAEELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGI 80 (287)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (287)
|+||+|.++++.|+.||++||++.+..+.+|+++++++|++++||+|||+|+|++++++.+....... ....++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~------~~~~g~ 97 (304)
T 3cn5_A 24 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV------CGSVGL 97 (304)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCST------TCSCHH
T ss_pred HHHHhhccccccccCCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCC------CCCCCc
Confidence 78999887667788999999999999999999999999999999999999999999988765433211 234578
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccccchHHHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCccc
Q 023108 81 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANE 160 (287)
Q Consensus 81 ~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~ 160 (287)
+.+++++|+++++.+|+++++||||+|||||+++++.|+++|++++.|+++|++||++|+++++.++++.++..+.+.+.
T Consensus 98 l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~ 177 (304)
T 3cn5_A 98 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANS 177 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCC
T ss_pred eeehhhhhhhhheeeeEeeccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999877666555565
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcC
Q 023108 161 LADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYN 240 (287)
Q Consensus 161 ~~~~~s~~~~f~~E~l~T~~L~~~vl~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~ 240 (287)
+.++.+..++|+.|+++||+|+++++.+.|+++....++.+.+.|+.||++++++.++.+++||+++|||||||||++++
T Consensus 178 ~~~~~s~~~~f~~E~i~TfiLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~ 257 (304)
T 3cn5_A 178 VALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFN 257 (304)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHC
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHc
Confidence 66778889999999999999999999888866543322224588999999999999999999999999999999999965
Q ss_pred CCCCCCcccccchhhHHHHHHHHHHHHHHccccccccccCccCCCCC
Q 023108 241 KDKAWDDQWIFWVGPFIGAAIAALYHQFILRASASKALGSRRSSSNI 287 (287)
Q Consensus 241 ~~~~~~~~wvy~v~p~lGa~~a~~~y~~~~~~~~~~~~~~~~~~~~~ 287 (287)
++..|+++|+||+||++|+++|+++|++++.+++.+..+++|+++.|
T Consensus 258 ~~~~w~~~WvywvgPiiGa~laa~~y~~l~~~~~~~~~~~~~~~~~~ 304 (304)
T 3cn5_A 258 SNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGEFRSNPTN 304 (304)
T ss_dssp CHHHHHHTTHHHHHHHHHHHHHHHHHHTTSCCCC-------------
T ss_pred cCCCcCceEEEeehHHHHHHHHHHHHHHHhCCCCCCcccccccCCCC
Confidence 55679999999999999999999999999999877777788888765
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=100.00 E-value=3.1e-54 Score=390.04 Aligned_cols=245 Identities=38% Similarity=0.669 Sum_probs=205.3
Q ss_pred CCCCCCCCCCCCC-----CcccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHH
Q 023108 15 DKDYHDPPPAPLI-----GAEELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGG 89 (287)
Q Consensus 15 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (287)
.|||.+|.+.|.- ..++..++++||++++||+|||+|+|++++++++.... . .....+++.+++++|+
T Consensus 24 ~~~~~~~~~~ps~~~~~~~~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~-~------~~~~~g~l~Iala~Gl 96 (340)
T 3iyz_A 24 RDLYDDDDKDPSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGS-E------NPLPVDMVLISLCFGL 96 (340)
T ss_pred CCCCCCCCCCCcchhhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-C------CCCCcchHHHHHHHHH
Confidence 5666666555421 23556677899999999999999999999988754211 1 1223467889999999
Q ss_pred HHHHHHHHhcCccccccchHHHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCccccCCCCcchh
Q 023108 90 MIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGA 169 (287)
Q Consensus 90 ~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 169 (287)
++++.+|+++++||||+|||||+++++.|+++|.+++.|+++|++||++|+++++.++++.... ..+.+.+.++.+..+
T Consensus 97 aV~~~v~~~g~ISGAHlNPAVTlal~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~-~lg~~~~~~~~s~~~ 175 (340)
T 3iyz_A 97 SIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTAGH 175 (340)
T ss_pred HHHHheeEeeccCcCeeChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcC-ceeeccCCCccCHHH
Confidence 9999999999999999999999999999999999999999999999999999999998764321 223444566778899
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCccc
Q 023108 170 GLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQW 249 (287)
Q Consensus 170 ~f~~E~l~T~~L~~~vl~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~w 249 (287)
+|+.|+++||+|+++++++.|+++... ....|+.||+++.+.....+++||++||||||||||++.+ .|.++|
T Consensus 176 ~f~~E~i~Tf~Lv~~Ila~~d~~~~~~----~~~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~---~w~~~W 248 (340)
T 3iyz_A 176 GLLVELIITFQLVFTIFASCDDKRTDV----TGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHW 248 (340)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccCCc----ccchhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHcc---CCCcEe
Confidence 999999999999999999988776432 2457999999998887788899999999999999999854 699999
Q ss_pred ccchhhHHHHHHHHHHHHHHccccc
Q 023108 250 IFWVGPFIGAAIAALYHQFILRASA 274 (287)
Q Consensus 250 vy~v~p~lGa~~a~~~y~~~~~~~~ 274 (287)
|||+||++|+++|+++|++++.|+.
T Consensus 249 VywvgPiiGailaallY~~l~~p~~ 273 (340)
T 3iyz_A 249 IYWVGPIIGAVLAGALYEYVFCPDV 273 (340)
T ss_pred ehhHHHHHHHHHHHHHHHHHhCCCh
Confidence 9999999999999999999997764
No 3
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.9e-52 Score=362.68 Aligned_cols=222 Identities=40% Similarity=0.719 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHH
Q 023108 36 SFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 115 (287)
Q Consensus 36 ~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~ 115 (287)
++||++++||+||++|++++++++.+.... . .....+++.+++++|+++++.+++++++||||+|||||++++
T Consensus 2 ~~~r~~~aEfiGT~~lv~~g~g~~~~~~~~-~------~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~ 74 (223)
T 3gd8_A 2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGT-E------KPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMV 74 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTTTT-T------SCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccC-C------CCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHH
Confidence 679999999999999999999987643111 1 123456888999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCccccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 023108 116 LARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKA 195 (287)
Q Consensus 116 ~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~~~~~~~ 195 (287)
+.|+++|++++.|+++|++||++|+.+++.+++++... ..+.+.+.++.+..++++.|+++||+|+++++.+.|+|++.
T Consensus 75 ~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~-~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~ 153 (223)
T 3gd8_A 75 CTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG-GLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTD 153 (223)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHT-TTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCTTCSC
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-ceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 99999999999999999999999999999998875432 23344556677889999999999999999999998877653
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHHHHHccc
Q 023108 196 RDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFILRA 272 (287)
Q Consensus 196 ~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y~~~~~~ 272 (287)
. ....|+.||+.+.......++.||++||||||||||++.+ .|+++|+||++|++|+++++++|++++.|
T Consensus 154 ~----~~~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~---~w~~~Wvy~vgP~~Ga~la~~~y~~~~~p 223 (223)
T 3gd8_A 154 V----TGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGPIIGAVLAGGLYEYVFCP 223 (223)
T ss_dssp C----CSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---CCTTTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred c----cCCccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhc---CCCcEEeehhHHHHHHHHHHHHHHHHcCC
Confidence 2 2467999999998777777788999999999999999964 69999999999999999999999999875
No 4
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=100.00 E-value=6.9e-52 Score=368.79 Aligned_cols=235 Identities=43% Similarity=0.743 Sum_probs=197.3
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchH
Q 023108 30 EELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPA 109 (287)
Q Consensus 30 ~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPa 109 (287)
+|+++++++|++++||+||++|+|++++++.+....... .+......+++.+++++|+++++.+++++++||||+|||
T Consensus 3 ~e~~~~~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~--~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPA 80 (271)
T 1j4n_A 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKS--NQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPA 80 (271)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSS--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--ccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHH
Confidence 456678899999999999999999999988764422111 001122335788999999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCccccCCCCcchhhHHHHHHHHHHHHHHHHHhc
Q 023108 110 VTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSAT 189 (287)
Q Consensus 110 vTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~ 189 (287)
||+++++.|+++|++++.|+++|++||++|+.+++.++++... ...+.+...++.+..++++.|+++|++|+++++++.
T Consensus 81 VTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~~ 159 (271)
T 1j4n_A 81 VTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD-NSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATT 159 (271)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTT-CCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc-cccccccCCCccchHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999864321 122334455677888999999999999999999988
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHHHHH
Q 023108 190 DPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFI 269 (287)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y~~~ 269 (287)
|+++... ..+.|+.||+++.+.....+++||+++|||||||||++.+ .|.++|+||+||++|+++|+++|+++
T Consensus 160 d~~~~~~----~~~~pl~IGl~v~~~~~~~~~~TG~a~NPAR~~Gpal~~~---~~~~~wv~~vgP~~Ga~la~~~y~~~ 232 (271)
T 1j4n_A 160 DRRRRDL----GGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITH---NFQDHWIFWVGPFIGAALAVLIYDFI 232 (271)
T ss_dssp CSSCCCC----CSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTT---CCTTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCCc----cccHHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHhC---CCcceeHHHHHHHHHHHHHHHHHHHH
Confidence 8765432 3578999999999887887889999999999999999853 69999999999999999999999999
Q ss_pred ccccc
Q 023108 270 LRASA 274 (287)
Q Consensus 270 ~~~~~ 274 (287)
+.++.
T Consensus 233 ~~~~~ 237 (271)
T 1j4n_A 233 LAPRS 237 (271)
T ss_dssp TSCCS
T ss_pred hCCCC
Confidence 97754
No 5
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.4e-52 Score=368.05 Aligned_cols=228 Identities=37% Similarity=0.634 Sum_probs=198.6
Q ss_pred CcccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccc
Q 023108 28 GAEELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHIN 107 (287)
Q Consensus 28 ~~~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~N 107 (287)
..+|+++++++|++++||+|||+|+|++++++.... ....+++.+++++|+++++.+++++++||||+|
T Consensus 2 ~~~e~~~~~~~r~~laEfiGT~~lv~~g~g~~~~~~-----------~~~~~~l~ial~~Glav~~~i~~~g~iSGaHlN 70 (266)
T 3d9s_A 2 SKKEVCSVAFLKAVFAEFLATLIFVFFGLGSALKWP-----------SALPTILQIALAFGLAIGTLAQALGPVSGGHIN 70 (266)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCS-----------SSCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred ChhhhhChHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------CCCccHHHHHHHHHHHHHHHHHHHcccCcceEC
Confidence 456788899999999999999999999999875211 112357889999999999999999999999999
Q ss_pred hHHHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCccccCCCCcchhhHHHHHHHHHHHHHHHHH
Q 023108 108 PAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFS 187 (287)
Q Consensus 108 PavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~ 187 (287)
||||+++++.|+++|.+++.|+++|++||++|+.+++.++++.... ..+.+.+.++.+..++|+.|+++|++|++++++
T Consensus 71 PAVTla~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~-~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~ 149 (266)
T 3d9s_A 71 PAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARG-NLAVNALNNNTTQGQAMVVELILTFQLALCIFA 149 (266)
T ss_dssp HHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHT-TTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccC-ceeeccCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999865322 233444556778899999999999999999999
Q ss_pred hcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCc-ccccchhhHHHHHHHHHHH
Q 023108 188 ATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDD-QWIFWVGPFIGAAIAALYH 266 (287)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~-~wvy~v~p~lGa~~a~~~y 266 (287)
+.|+++... ..+.|+.||+++.+..+..+++||+++|||||||||++.+ .|++ +|+||+||++|+++|+++|
T Consensus 150 ~~d~~~~~~----~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~---~~~~~~Wvy~vgP~~Ga~la~~~y 222 (266)
T 3d9s_A 150 STDSRRTSP----VGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMN---RFSPAHWVFWVGPIVGAVLAAILY 222 (266)
T ss_dssp HHCTTCCSC----CCCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHT---CCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCCCc----cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHcC---CcccCEeeeehHHHHHHHHHHHHH
Confidence 988766432 3468999999999999999999999999999999999864 6888 9999999999999999999
Q ss_pred HHHccccc
Q 023108 267 QFILRASA 274 (287)
Q Consensus 267 ~~~~~~~~ 274 (287)
++++.|+.
T Consensus 223 ~~l~~~~~ 230 (266)
T 3d9s_A 223 FYLLFPNS 230 (266)
T ss_dssp HHTTSCCS
T ss_pred HHHhCCCc
Confidence 99988754
No 6
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=100.00 E-value=5.1e-52 Score=372.71 Aligned_cols=232 Identities=39% Similarity=0.688 Sum_probs=194.9
Q ss_pred CcccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccc
Q 023108 28 GAEELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHIN 107 (287)
Q Consensus 28 ~~~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~N 107 (287)
+.+|..+++++|++++||+|||+|+|++++++++..... .....+++.+++++|+++++.+++++++||||+|
T Consensus 3 ~~~~~~~~~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~~-------~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlN 75 (301)
T 2zz9_A 3 AFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSE-------NPLPVDMVLISLCFGLSIATMVQCFGHISGGHIN 75 (301)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHTTSCCTTCC--------CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCS
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------CCCCcchHHHHHHHHHHHHHhhheeccCCcceeC
Confidence 345667789999999999999999999998765433111 1233467889999999999999999999999999
Q ss_pred hHHHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCccccCCCCcchhhHHHHHHHHHHHHHHHHH
Q 023108 108 PAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFS 187 (287)
Q Consensus 108 PavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~ 187 (287)
||||+++++.|+++|++++.|+++|++||++|+++++.++++.... ..+.+.+.++.+..++|+.|+++||+|++++++
T Consensus 76 PAVTla~~~~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~-~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~ 154 (301)
T 2zz9_A 76 PAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFA 154 (301)
T ss_dssp HHHHHHHHHTSSSCTTTTHHHHHHHHHHHHHHHHHHHTTSCSCGGG-TSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-ceeeecCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999865432 233445566788899999999999999999999
Q ss_pred hcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHHH
Q 023108 188 ATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQ 267 (287)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y~ 267 (287)
+.|+++... ..+.|+.||+++.+.....+++||++||||||||||++.+ .|.++|+||+||++|+++|+++|+
T Consensus 155 ~~d~~~~~~----~~~~pl~IGl~v~i~~~~g~~~TG~a~NPAR~~GPal~~~---~w~~~WVy~vgPiiGailaa~ly~ 227 (301)
T 2zz9_A 155 SCDDKRTDV----TGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGPIIGAVLAGALYE 227 (301)
T ss_dssp HSCSSSSCC----SSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC---CCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCc----cchHhHHHHHHHHHHHHHhcCCcccccCcHHHHHHHHHhC---CCcceeeeeeHHHHHHHHHHHHHH
Confidence 888766432 3478999999998888888889999999999999999964 699999999999999999999999
Q ss_pred HHccccc
Q 023108 268 FILRASA 274 (287)
Q Consensus 268 ~~~~~~~ 274 (287)
+++.++.
T Consensus 228 ~l~~~~~ 234 (301)
T 2zz9_A 228 YVFCPDV 234 (301)
T ss_dssp TTTC---
T ss_pred HHhCCch
Confidence 9987643
No 7
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=4.6e-52 Score=365.43 Aligned_cols=223 Identities=31% Similarity=0.522 Sum_probs=186.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHH
Q 023108 33 TRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTF 112 (287)
Q Consensus 33 ~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTl 112 (287)
.+++++|++++||+|||+|++++++++....... ....+++.+++++|+++++.+++++++||||+|||||+
T Consensus 25 ~~~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~--------~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTl 96 (256)
T 3llq_A 25 QSYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFP--------ELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSV 96 (256)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHTTCT--------TTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--------CCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHH
Confidence 4567899999999999999999999865333221 12357889999999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchh--hhhcCCC---c-cccCCCCcchhhHHHHHHHHHHHHHHHH
Q 023108 113 GLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSY--YTRYGGG---A-NELADGYSTGAGLGAEIIGTFVLVYTVF 186 (287)
Q Consensus 113 a~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~--~~~~~~~---~-~~~~~~~s~~~~f~~E~l~T~~L~~~vl 186 (287)
++++.|+++|++++.|+++|++||++|+.+++.++++. ++..+.. . .+.+...+..++|+.|+++|++|+++++
T Consensus 97 a~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t~p~~~s~~~~f~~E~i~Tf~Lv~~il 176 (256)
T 3llq_A 97 GLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVIL 176 (256)
T ss_dssp HHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988532 2110111 1 1223356788999999999999999999
Q ss_pred HhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHH
Q 023108 187 SATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYH 266 (287)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y 266 (287)
++.|+++. +.+.|+.||+++.++.++.+++||++||||||||||++.+ +..|+++||||+||++|+++|+++|
T Consensus 177 ~~~d~~~~------~~~~pl~IGl~v~~i~~~~g~~TG~a~NPAR~lGPal~~g-~~~~~~~WVy~vgPi~Ga~la~~~y 249 (256)
T 3llq_A 177 GSTHGRVP------AGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVG-GWALQQLWLFWLAPIVGGAAGAVIW 249 (256)
T ss_dssp HHHSTTSC------TTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHC-HHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCC------ccchhHHHHHHHHHHHHHhccccccccChHHHHHHHHHcC-CCcccceeeeeeHHHHHHHHHHHHH
Confidence 98886543 3478999999999999999999999999999999999864 3456799999999999999999999
Q ss_pred HHHc
Q 023108 267 QFIL 270 (287)
Q Consensus 267 ~~~~ 270 (287)
+++.
T Consensus 250 ~~l~ 253 (256)
T 3llq_A 250 KLFG 253 (256)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9885
No 8
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=100.00 E-value=1e-50 Score=359.79 Aligned_cols=226 Identities=37% Similarity=0.628 Sum_probs=195.6
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchH
Q 023108 30 EELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPA 109 (287)
Q Consensus 30 ~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPa 109 (287)
+|+++++++|++++||+|||+|++++++++... . ....+++.+++++|+++++.+++++++||||+|||
T Consensus 2 ~e~~~~~~~~~~laEfiGT~~Lv~~g~g~~~~~----~-------~~~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPA 70 (263)
T 2b6o_A 2 WELRSASFWRAIFAEFFATLFYVFFGLGASLRW----A-------PGPLHVLQVALAFGLALATLVQAVGHISGAHVNPA 70 (263)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----C-------SSSCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-------CCCcchHHHHHHHHHHHHHHHHHhhccCcCeeChH
Confidence 356678899999999999999999999887522 1 12236778999999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCccccCCCCcchhhHHHHHHHHHHHHHHHHHhc
Q 023108 110 VTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSAT 189 (287)
Q Consensus 110 vTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~ 189 (287)
||+++++.|+++|.+++.|+++|++||++|+.+++.++++.... ..+.+.+.++.+..++|+.|+++||+|+++++++.
T Consensus 71 VTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~ 149 (263)
T 2b6o_A 71 VTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRG-NLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATY 149 (263)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCS-SCSCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccc-ccccccCCccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999865422 23344555677889999999999999999999998
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHHHHH
Q 023108 190 DPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFI 269 (287)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y~~~ 269 (287)
|+++... ..+.|+.||+.+.++.+..+++||++||||||||||++.+ .|+++|+||+||++|+++|+++|+++
T Consensus 150 d~~~~~~----~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~---~~~~~Wvy~vgP~~Ga~la~~~y~~l 222 (263)
T 2b6o_A 150 DERRNGR----LGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTR---NFTNHWVYWVGPVIGAGLGSLLYDFL 222 (263)
T ss_dssp CTTSCSS----CCCHHHHHHHHHHHHHHHHTTTSTTCCCHHHHHHHHHHHT---CCTTCTHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCCC----cccHHHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHcC---CccceeHHHHHHHHHHHHHHHHHHHH
Confidence 8665432 3478999999999999999999999999999999999854 79999999999999999999999999
Q ss_pred ccccc
Q 023108 270 LRASA 274 (287)
Q Consensus 270 ~~~~~ 274 (287)
+.|+.
T Consensus 223 ~~~~~ 227 (263)
T 2b6o_A 223 LFPRL 227 (263)
T ss_dssp TSCCS
T ss_pred hCCcc
Confidence 87754
No 9
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=100.00 E-value=3.9e-51 Score=366.10 Aligned_cols=229 Identities=27% Similarity=0.389 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHHHH
Q 023108 35 WSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 114 (287)
Q Consensus 35 ~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~ 114 (287)
++++|++++||+|||+|+|++++++.+...... ..+.+.+++++|+++++.+++++++||||+|||||+++
T Consensus 5 ~~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~---------~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~ 75 (281)
T 1ldf_A 5 STLKGQCIAEFLGTGLLIFFGVGCVAALKVAGA---------SFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIAL 75 (281)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---------CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---------CCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHH
Confidence 567899999999999999999988765443221 12345589999999999999999999999999999999
Q ss_pred HHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcC-----------------CCccccCCCCcchhhHHHHHHH
Q 023108 115 FLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYG-----------------GGANELADGYSTGAGLGAEIIG 177 (287)
Q Consensus 115 ~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~s~~~~f~~E~l~ 177 (287)
++.|+++|++++.|+++|++||++|+.+++.++++.++..+ ...+.+.++.+..++|+.|+++
T Consensus 76 ~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~~~s~~~~~~~E~i~ 155 (281)
T 1ldf_A 76 WLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVI 155 (281)
T ss_dssp HHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccceeeccCCccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999986543321 0122234457888999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcC----CCC------CCCc
Q 023108 178 TFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYN----KDK------AWDD 247 (287)
Q Consensus 178 T~~L~~~vl~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~----~~~------~~~~ 247 (287)
||+|+++++++.|+++.... +.+.|+.||+++.++.++.+++||++||||||||||++.. ++. +|.+
T Consensus 156 Tf~Lv~~il~~~d~~~~~~~---~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~g~g~~~~~~~~~~~~ 232 (281)
T 1ldf_A 156 TAILMGLILALTDDGNGVPR---GPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPY 232 (281)
T ss_dssp HHHHHHHHHHHHCTTSSSCC---GGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCT
T ss_pred HHHHHHHHHHHhccCCCCcc---cchHHHHHHHHHHHHHHhcccccccccCcHhhHHHHHHHHhcccccccccccCCCce
Confidence 99999999999887664321 3588999999999999999999999999999999999851 112 2338
Q ss_pred ccccchhhHHHHHHHHHHHHHHcccccc
Q 023108 248 QWIFWVGPFIGAAIAALYHQFILRASAS 275 (287)
Q Consensus 248 ~wvy~v~p~lGa~~a~~~y~~~~~~~~~ 275 (287)
+||||++|++|+++|+++|++++.++.+
T Consensus 233 ~WVy~vgPi~Ga~la~~~y~~l~~~~~~ 260 (281)
T 1ldf_A 233 FLVPLFGPIVGAIVGAFAYRKLIGRHLP 260 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTGGGC-
T ss_pred eeHHhHHHHHHHHHHHHHHHHHhCccCC
Confidence 9999999999999999999999977654
No 10
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=100.00 E-value=1e-50 Score=361.88 Aligned_cols=227 Identities=33% Similarity=0.537 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--hcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHH
Q 023108 35 WSFYRAIIAEFIATLLFLYITVLTVI--GHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTF 112 (287)
Q Consensus 35 ~~~~~~~~~EfigT~~lv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTl 112 (287)
++.+|++++||+|||+|+|+++++.. +....... ......+++.+++++|+++++.+|+++++||||+|||||+
T Consensus 42 ~~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~----~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTl 117 (279)
T 2w2e_A 42 RNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPD----GGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTL 117 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGG----GCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc----cCCCCccHHHHHHHHHHHHHHHHHHHhhcCccccChHHHH
Confidence 46789999999999999999988632 21111000 0122346788999999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCccccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCC
Q 023108 113 GLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPK 192 (287)
Q Consensus 113 a~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~~~~ 192 (287)
++++.|+++|++++.|+++|++||++|+++++.++++... ..+.+.++.+..++|+.|+++||+|+++++.+.+++
T Consensus 118 a~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~----~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~ 193 (279)
T 2w2e_A 118 ALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIA----FANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEK 193 (279)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCC----CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccce----eeccCCccccHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999876531 133344567888999999999999999999987765
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHHHHHccc
Q 023108 193 RKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFILRA 272 (287)
Q Consensus 193 ~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y~~~~~~ 272 (287)
+.. ..+.|+.||+++.++.++.+++||++||||||||||++.+ ..|.++|+||+||++|+++|+++|++++..
T Consensus 194 ~~~-----~~~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~--~~~~~~WVy~vgPiiGa~la~~ly~~l~~~ 266 (279)
T 2w2e_A 194 HRA-----TWFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAAR--SFPNYHWIYWLGPILGAFLAYSIWQMWKWL 266 (279)
T ss_dssp STT-----GGGHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHT--CCCTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCC-----cCcHHHHHHHHHHHHHHhcccccccccChHHHHHHHHHhc--cchhhhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 532 4588999999999999999999999999999999999964 345789999999999999999999999876
Q ss_pred cccc
Q 023108 273 SASK 276 (287)
Q Consensus 273 ~~~~ 276 (287)
+.++
T Consensus 267 ~~~~ 270 (279)
T 2w2e_A 267 NYQT 270 (279)
T ss_dssp TTTC
T ss_pred CCCc
Confidence 6544
No 11
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=100.00 E-value=1.4e-50 Score=353.58 Aligned_cols=222 Identities=30% Similarity=0.516 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHHH
Q 023108 37 FYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFL 116 (287)
Q Consensus 37 ~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~~ 116 (287)
++|++++||+||++|+|++++++....... ....+++.+++++|+++++.+|+++++||||+|||||+++++
T Consensus 4 l~r~~~aEf~GT~~lv~~g~g~~~~~~~~~--------~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~ 75 (234)
T 2o9g_A 4 MFRKLAAESFGTFWLVFGGSGSAVLAAGFP--------ELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWA 75 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCT--------TTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCC--------CCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHHH
Confidence 679999999999999999998864322111 123468889999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchh--hhhc-----CCCc-cccCCCCcchhhHHHHHHHHHHHHHHHHHh
Q 023108 117 ARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSY--YTRY-----GGGA-NELADGYSTGAGLGAEIIGTFVLVYTVFSA 188 (287)
Q Consensus 117 ~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~--~~~~-----~~~~-~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~ 188 (287)
.|+++|++++.|+++|++||++|+.+++.++++. ++.. ..+. .+.+.+.+..++|+.|+++|++|+++++.+
T Consensus 76 ~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~E~i~T~~Lv~~i~~~ 155 (234)
T 2o9g_A 76 GGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGA 155 (234)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeeecCCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998743 2110 0111 112335678899999999999999999998
Q ss_pred cCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHHHH
Q 023108 189 TDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQF 268 (287)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y~~ 268 (287)
.|+|+. +.+.|+.||+++.++.+..+++||+++|||||||||++.+ +..|+++|+||++|++|+++|+++|++
T Consensus 156 ~d~~~~------~~~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g-~~~~~~~Wv~~vgP~~Ga~la~~~y~~ 228 (234)
T 2o9g_A 156 TDKFAP------AGFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQG-GWALEQLWFFWVVPIVGGIIGGLIYRT 228 (234)
T ss_dssp TSTTSC------TTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHC-SHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCc------cchHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhC-CCCCceeeeeehHHhHHHHHHHHHHHH
Confidence 875432 3478999999999999999999999999999999999974 345779999999999999999999999
Q ss_pred Hcccc
Q 023108 269 ILRAS 273 (287)
Q Consensus 269 ~~~~~ 273 (287)
+++++
T Consensus 229 ~~~~~ 233 (234)
T 2o9g_A 229 LLEKR 233 (234)
T ss_dssp HTSCC
T ss_pred HcCCC
Confidence 98753
No 12
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=100.00 E-value=4.7e-51 Score=361.43 Aligned_cols=232 Identities=20% Similarity=0.305 Sum_probs=192.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHHH
Q 023108 34 RWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFG 113 (287)
Q Consensus 34 ~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla 113 (287)
.++++|++++||+|||+|+|++++++.+..... ...+++.+++++|+++++.+++++++||||+|||||++
T Consensus 6 ~~~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~---------~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla 76 (258)
T 3c02_A 6 YKSYVREFIGEFLGTFVLMFLGEGATANFHTTG---------LSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIG 76 (258)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---------STTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---------CCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHH
Confidence 356889999999999999999998876543211 12357889999999999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCC----ccccCCCCcchhhHHHHHHHHHHHHHHHHHhc
Q 023108 114 LFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGG----ANELADGYSTGAGLGAEIIGTFVLVYTVFSAT 189 (287)
Q Consensus 114 ~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~ 189 (287)
+++.|+++|++++.|+++|++||++|+.+++.++++.+++.+.. ......+.+..++++.|+++|++|+++++++.
T Consensus 77 ~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~E~i~Tf~Lv~~i~~~~ 156 (258)
T 3c02_A 77 LSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVV 156 (258)
T ss_dssp HHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTCSCTTCSSCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998766543211 11222334455699999999999999999998
Q ss_pred CCCCCCCCCCCCchH-HHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcC---CCCCC----CcccccchhhHHHHHH
Q 023108 190 DPKRKARDPHVPVLA-PLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYN---KDKAW----DDQWIFWVGPFIGAAI 261 (287)
Q Consensus 190 ~~~~~~~~~~~~~~~-~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~---~~~~~----~~~wvy~v~p~lGa~~ 261 (287)
|+|++... +.+. |+.||+++.++.++.+++||++||||||||||++.+ ++..| .++|+||++|++|+++
T Consensus 157 d~~~~~~~---~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~g~~~~~~~~~y~Wv~~vgP~~Ga~l 233 (258)
T 3c02_A 157 DENICGKF---HILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVV 233 (258)
T ss_dssp CHHHHCSC---CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CcccCCcc---cccHHHHHHHHHHHHHHHhccCccCCCcChHHHHHHHHHHhccccccccccCCceeehHHHHHHHHHHH
Confidence 87654211 4577 999999999999999999999999999999999852 22344 6799999999999999
Q ss_pred HHHHHHHHcccccccc
Q 023108 262 AALYHQFILRASASKA 277 (287)
Q Consensus 262 a~~~y~~~~~~~~~~~ 277 (287)
|+++|++++.++.+++
T Consensus 234 a~~~y~~~~~~~~~~~ 249 (258)
T 3c02_A 234 FCQFYDKVICPLVDLA 249 (258)
T ss_dssp HHHHHHHTHHHHHHHC
T ss_pred HHHHHHHHhcccCCCc
Confidence 9999999998776543
No 13
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=100.00 E-value=1.6e-49 Score=349.58 Aligned_cols=231 Identities=30% Similarity=0.427 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCCCC-CC-CCC-----CCchhHHHHHHHHHHHHHHHHHhcCccccccc
Q 023108 36 SFYRAIIAEFIATLLFLYITVLTVIGHK-SQTDAKH-GG-DGC-----GGVGILGIAWAFGGMIFVLVYCTAGISGGHIN 107 (287)
Q Consensus 36 ~~~~~~~~EfigT~~lv~~~~~~~~~~~-~~~~~~~-~~-~~~-----~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~N 107 (287)
+++|++++||+||++|+|++++++.+.. ....+.. ++ +.+ ...+++.+++++|+++++.+++++++||||+|
T Consensus 3 ~~~~~~~aEfiGT~~lv~~g~g~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaH~N 82 (246)
T 2f2b_A 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHIN 82 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccccccccchhHHHHHHHHHHHHHhheecccccceeC
Confidence 5689999999999999999998876543 1111000 00 001 22346779999999999999999999999999
Q ss_pred hHHHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhh-hcCCCccccCCCCcchhhHHHHHHHHHHHHHHHH
Q 023108 108 PAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYT-RYGGGANELADGYSTGAGLGAEIIGTFVLVYTVF 186 (287)
Q Consensus 108 PavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~f~~E~l~T~~L~~~vl 186 (287)
||||+++++.|+++|++++.|+++|++||++|+.+++.+++++.. ....+.+.+.++.+..++++.|+++|++|+++++
T Consensus 83 PAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~~E~i~Tf~Lv~~i~ 162 (246)
T 2f2b_A 83 PAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIM 162 (246)
T ss_dssp HHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCTHHHHTTGGGCCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhcceeeeccCccccchHHHHHHHHHHHHHHHheee
Confidence 999999999999999999999999999999999999999987321 1122233344677889999999999999999999
Q ss_pred HhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHH--hc-CCCCCCCcccccchhhHHHHHHHH
Q 023108 187 SATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAV--IY-NKDKAWDDQWIFWVGPFIGAAIAA 263 (287)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i--~~-~~~~~~~~~wvy~v~p~lGa~~a~ 263 (287)
...++++.. ..+.|+.+|+++.+..++.+++||+++|||||||||+ .. +++..|.+.|+||++|++|+++|+
T Consensus 163 ~~~~~~~~~-----~~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~~~w~~~~vy~vap~~Ga~laa 237 (246)
T 2f2b_A 163 GIAVDERAP-----KGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAA 237 (246)
T ss_dssp HHTTSTTSC-----TTCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHH
T ss_pred EEecCCCCC-----CceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHcCCCCCcceEEEeeeHHHHHHHHHH
Confidence 876655432 3468999999999999999999999999999999999 33 446789999999999999999999
Q ss_pred HHHHHHcc
Q 023108 264 LYHQFILR 271 (287)
Q Consensus 264 ~~y~~~~~ 271 (287)
++|+++++
T Consensus 238 ~~y~~l~~ 245 (246)
T 2f2b_A 238 LTYQYLTS 245 (246)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHcC
Confidence 99999875
No 14
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=99.59 E-value=3.6e-15 Score=130.74 Aligned_cols=100 Identities=22% Similarity=0.359 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHHHH
Q 023108 35 WSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 114 (287)
Q Consensus 35 ~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~ 114 (287)
.+.++.++.|+++||+|++.+++.....+.. . + ..++.+|+.++..+++.+++||+|+|||+|+++
T Consensus 141 ~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~-~-----------~--~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp 206 (246)
T 2f2b_A 141 ISYWQAMLAEVVGTFLLMITIMGIAVDERAP-K-----------G--FAGIIIGLTVAGIITTLGNISGSSLNPARTFGP 206 (246)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTSTTSC-T-----------T--CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHheeeEEecCCCCC-C-----------c--eeeHHHHHHHHHHHhcccccCCCccCHHHHHHH
Confidence 4577899999999999999987754321111 0 1 167889999999999999999999999999999
Q ss_pred HH-----hcCCchhHHHHHHHHHhHHHHHhhhhhhhhcc
Q 023108 115 FL-----ARKVSLVRAVMYMVAQCLGAICGCGLVKAFQK 148 (287)
Q Consensus 115 ~~-----~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~ 148 (287)
.+ .++..|.+.|+||++|++|+++|+++.+.+.+
T Consensus 207 ~l~~~~~g~~~~w~~~~vy~vap~~Ga~laa~~y~~l~~ 245 (246)
T 2f2b_A 207 YLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLTS 245 (246)
T ss_dssp HHHHHHHHCCCCGGGTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCcceEEEeeeHHHHHHHHHHHHHHHHcC
Confidence 98 34668999999999999999999988776643
No 15
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=99.58 E-value=3e-15 Score=132.26 Aligned_cols=106 Identities=19% Similarity=0.147 Sum_probs=88.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCC
Q 023108 166 STGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAW 245 (287)
Q Consensus 166 s~~~~f~~E~l~T~~L~~~vl~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~ 245 (287)
+..+.++.|+++|++|+++.+......+.... .....++.+|+++++.+++.+++||+|+|||++++..+. ++..|
T Consensus 8 ~~~~~~laEfiGT~~Lv~~g~g~~~~~~~~~~--~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla~~~~--g~~~~ 83 (263)
T 2b6o_A 8 SFWRAIFAEFFATLFYVFFGLGASLRWAPGPL--HVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVG--SQMSL 83 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCSSSC--HHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHHHHHT--TCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--chHHHHHHHHHHHHHHHHHhhccCcCeeChHHHHHHHHh--cCCCH
Confidence 35678999999999999999876643211111 122468999999999999999999999999999999997 46789
Q ss_pred CcccccchhhHHHHHHHHHHHHHHcccccc
Q 023108 246 DDQWIFWVGPFIGAAIAALYHQFILRASAS 275 (287)
Q Consensus 246 ~~~wvy~v~p~lGa~~a~~~y~~~~~~~~~ 275 (287)
.+.|+||++|++|+++|+.+.+.+++++..
T Consensus 84 ~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~ 113 (263)
T 2b6o_A 84 LRAICYVVAQLLGAVAGAAVLYSVTPPAVR 113 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 999999999999999999999999876543
No 16
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=99.48 E-value=3.6e-14 Score=125.41 Aligned_cols=104 Identities=19% Similarity=0.171 Sum_probs=86.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCC
Q 023108 166 STGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAW 245 (287)
Q Consensus 166 s~~~~f~~E~l~T~~L~~~vl~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~ 245 (287)
+..+.++.|+++|++|+++.++....+..... .....++.+|+++++.+++.+.+||+|+|||++++..+. ++..|
T Consensus 10 ~~~r~~laEfiGT~~lv~~g~g~~~~~~~~~~--~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~--g~~~~ 85 (266)
T 3d9s_A 10 AFLKAVFAEFLATLIFVFFGLGSALKWPSALP--TILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVG--NQISL 85 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHT--SSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc--cHHHHHHHHHHHHHHHHHHHcccCcceECHHHHHHHHHh--cCCCH
Confidence 34678999999999999998876543222111 133468999999999999999999999999999999997 46789
Q ss_pred CcccccchhhHHHHHHHHHHHHHHcccc
Q 023108 246 DDQWIFWVGPFIGAAIAALYHQFILRAS 273 (287)
Q Consensus 246 ~~~wvy~v~p~lGa~~a~~~y~~~~~~~ 273 (287)
.+.+.|+++|++|+++|+.+.+.+++++
T Consensus 86 ~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~ 113 (266)
T 3d9s_A 86 LRAFFYVAAQLVGAIAGAGILYGVAPLN 113 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 9999999999999999999999888653
No 17
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=99.48 E-value=5.8e-14 Score=121.18 Aligned_cols=107 Identities=18% Similarity=0.174 Sum_probs=86.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCCCCC--CCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCC
Q 023108 167 TGAGLGAEIIGTFVLVYTVFSATDPKRK--ARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKA 244 (287)
Q Consensus 167 ~~~~f~~E~l~T~~L~~~vl~~~~~~~~--~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~ 244 (287)
.+|.++.|+++|++|++..++......+ ...........+.+|+++.+.+++.+.+||+|+|||.+++..+. ++..
T Consensus 3 ~~r~~~aEfiGT~~lv~~g~g~~~~~~~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~--g~~~ 80 (223)
T 3gd8_A 3 FWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCT--RKIS 80 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHT--TSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHc--CCCC
Confidence 4678999999999999988865442111 11111134568899999999999999999999999999999987 5678
Q ss_pred CCcccccchhhHHHHHHHHHHHHHHcccccc
Q 023108 245 WDDQWIFWVGPFIGAAIAALYHQFILRASAS 275 (287)
Q Consensus 245 ~~~~wvy~v~p~lGa~~a~~~y~~~~~~~~~ 275 (287)
|.+...|+++|++|+++|+.+.+.+++++..
T Consensus 81 ~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~ 111 (223)
T 3gd8_A 81 IAKSVFYIAAQCLGAIIGAGILYLVTPPSVV 111 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999988888766543
No 18
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=99.47 E-value=2.2e-13 Score=121.99 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=87.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcCCCCCC-C-CCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCC
Q 023108 166 STGAGLGAEIIGTFVLVYTVFSATDPKRKA-R-DPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDK 243 (287)
Q Consensus 166 s~~~~f~~E~l~T~~L~~~vl~~~~~~~~~-~-~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~ 243 (287)
+.++.++.||++|++|+++.++........ . .........+.+|+++++.+++++.+||+|+|||++++..+. +..
T Consensus 11 ~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~~--g~~ 88 (301)
T 2zz9_A 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCT--RKI 88 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHHHHT--SSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHHHHHHHHh--cCC
Confidence 457889999999999999888654321111 1 111123468899999999999999999999999999999997 567
Q ss_pred CCCcccccchhhHHHHHHHHHHHHHHcccccc
Q 023108 244 AWDDQWIFWVGPFIGAAIAALYHQFILRASAS 275 (287)
Q Consensus 244 ~~~~~wvy~v~p~lGa~~a~~~y~~~~~~~~~ 275 (287)
.|.+...|+++|++|+++|+.+.+.+++++..
T Consensus 89 ~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~ 120 (301)
T 2zz9_A 89 SIAKSVFYITAQCLGAIIGAGILYLVTPPSVV 120 (301)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHTTSCSCGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 89999999999999999999999888876543
No 19
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=99.45 E-value=8.1e-14 Score=122.23 Aligned_cols=105 Identities=25% Similarity=0.202 Sum_probs=83.4
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCC
Q 023108 165 YSTGAGLGAEIIGTFVLVYTVFSATDPKRKAR-DPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDK 243 (287)
Q Consensus 165 ~s~~~~f~~E~l~T~~L~~~vl~~~~~~~~~~-~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~ 243 (287)
.+..+.++.|+++|++|+++.++........+ ........++.+|+++++.+++.+.+||+++|||++++..+. +..
T Consensus 27 ~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~--g~~ 104 (256)
T 3llq_A 27 YVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVA--GRF 104 (256)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHT--TSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHHHHHh--cCC
Confidence 35678999999999999998776432111111 111123458899999999999999999999999999999997 567
Q ss_pred CCCcccccchhhHHHHHHHHHHHHHHcc
Q 023108 244 AWDDQWIFWVGPFIGAAIAALYHQFILR 271 (287)
Q Consensus 244 ~~~~~wvy~v~p~lGa~~a~~~y~~~~~ 271 (287)
.|.+.+.|+++|++|+++|+.+.+.+++
T Consensus 105 ~~~~~~~YiiAQ~lGA~~ga~lv~~~~~ 132 (256)
T 3llq_A 105 PASSLVPYVIAQVAGAIVAAAALYVIAT 132 (256)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999999998887764
No 20
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=99.44 E-value=1.4e-13 Score=122.16 Aligned_cols=105 Identities=13% Similarity=0.188 Sum_probs=83.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCCC------CCCCCC-CCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhc
Q 023108 167 TGAGLGAEIIGTFVLVYTVFSATDPK------RKARDP-HVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIY 239 (287)
Q Consensus 167 ~~~~f~~E~l~T~~L~~~vl~~~~~~------~~~~~~-~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~ 239 (287)
.++.++.|+++|++|++..++..... +..... ......++.+|+++++.+++.+.+||+|+|||++++..+.
T Consensus 10 ~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~- 88 (271)
T 1j4n_A 10 FWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLS- 88 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHHHHHHHHHc-
Confidence 46789999999999999877532110 111110 1133568999999999999999999999999999999997
Q ss_pred CCCCCCCcccccchhhHHHHHHHHHHHHHHcccc
Q 023108 240 NKDKAWDDQWIFWVGPFIGAAIAALYHQFILRAS 273 (287)
Q Consensus 240 ~~~~~~~~~wvy~v~p~lGa~~a~~~y~~~~~~~ 273 (287)
++..|.+...|+++|++|+++|+.+.+.++.+.
T Consensus 89 -g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~ 121 (271)
T 1j4n_A 89 -CQISVLRAIMYIIAQCVGAIVATAILSGITSSL 121 (271)
T ss_dssp -TSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 567899999999999999999999888887543
No 21
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=99.44 E-value=1e-13 Score=125.42 Aligned_cols=107 Identities=18% Similarity=0.182 Sum_probs=85.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcCCCC--CCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCC
Q 023108 166 STGAGLGAEIIGTFVLVYTVFSATDPKR--KARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDK 243 (287)
Q Consensus 166 s~~~~f~~E~l~T~~L~~~vl~~~~~~~--~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~ 243 (287)
+.++.++.||++|++|+++.++...... ..........+.+.+|+++++.+++++.+||+++|||++++..+. +..
T Consensus 50 ~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal~l~--G~~ 127 (340)
T 3iyz_A 50 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCT--RKI 127 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHHHHc--CCC
Confidence 3478899999999999998775433211 111111134568999999999999999999999999999999987 567
Q ss_pred CCCcccccchhhHHHHHHHHHHHHHHccccc
Q 023108 244 AWDDQWIFWVGPFIGAAIAALYHQFILRASA 274 (287)
Q Consensus 244 ~~~~~wvy~v~p~lGa~~a~~~y~~~~~~~~ 274 (287)
.|.....|+++|++|+++|+.+.+.+++++.
T Consensus 128 ~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~ 158 (340)
T 3iyz_A 128 SIAKSVFYITAQCLGAIIGAGILYLVTPPSV 158 (340)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 8999999999999999999998887776543
No 22
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.40 E-value=2.2e-13 Score=118.44 Aligned_cols=105 Identities=20% Similarity=0.163 Sum_probs=83.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCCCCCCCC-CCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCC
Q 023108 167 TGAGLGAEIIGTFVLVYTVFSATDPKRKARD-PHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAW 245 (287)
Q Consensus 167 ~~~~f~~E~l~T~~L~~~vl~~~~~~~~~~~-~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~ 245 (287)
..+.++.|+++|++|++..++....++..++ .......++.+|+++++.+++.+++||+|+|||++++..+. ++..|
T Consensus 4 l~r~~~aEf~GT~~lv~~g~g~~~~~~~~~~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~--g~~~~ 81 (234)
T 2o9g_A 4 MFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAG--GRFPA 81 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHT--TSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHHHh--CCCCH
Confidence 4678999999999999987754321111111 11123468999999999999999999999999999999997 56789
Q ss_pred CcccccchhhHHHHHHHHHHHHHHcccc
Q 023108 246 DDQWIFWVGPFIGAAIAALYHQFILRAS 273 (287)
Q Consensus 246 ~~~wvy~v~p~lGa~~a~~~y~~~~~~~ 273 (287)
.+...|+++|++|+++|+.+.+.+++++
T Consensus 82 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~ 109 (234)
T 2o9g_A 82 KEVVGYVIAQVVGGIVAAALLYLIASGK 109 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999888887643
No 23
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.40 E-value=1.4e-13 Score=121.30 Aligned_cols=105 Identities=22% Similarity=0.205 Sum_probs=84.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcCC--CCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCC
Q 023108 166 STGAGLGAEIIGTFVLVYTVFSATDP--KRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDK 243 (287)
Q Consensus 166 s~~~~f~~E~l~T~~L~~~vl~~~~~--~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~ 243 (287)
+..+.++.|+++|++|+++.++.... +.+. ........+.+|+++++.+++.+.+||+|+|||++++..+. ++.
T Consensus 8 ~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~~--~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~--g~~ 83 (258)
T 3c02_A 8 SYVREFIGEFLGTFVLMFLGEGATANFHTTGL--SGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSI--NKF 83 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS--TTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHT--TSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC--CccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHh--CCC
Confidence 45678999999999999976643211 1111 11133468899999999999999999999999999999997 567
Q ss_pred CCCcccccchhhHHHHHHHHHHHHHHccccc
Q 023108 244 AWDDQWIFWVGPFIGAAIAALYHQFILRASA 274 (287)
Q Consensus 244 ~~~~~wvy~v~p~lGa~~a~~~y~~~~~~~~ 274 (287)
.|.+...|+++|++|+++|+.+.+.+++++.
T Consensus 84 ~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~ 114 (258)
T 3c02_A 84 DLKKIPVYFFAQLLGAFVGTSTVYGLYHGFI 114 (258)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 8999999999999999999998888887653
No 24
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=99.39 E-value=2e-13 Score=121.70 Aligned_cols=106 Identities=20% Similarity=0.112 Sum_probs=83.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCC
Q 023108 166 STGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAW 245 (287)
Q Consensus 166 s~~~~f~~E~l~T~~L~~~vl~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~ 245 (287)
+..+.++.|+++|++|++..++.................++.+|+++++.+++.+.+||+|+|||++++..+. ++..|
T Consensus 6 ~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~--g~~~~ 83 (281)
T 1ldf_A 6 TLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLF--ACFDK 83 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHH--SCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHHHHc--CCCCH
Confidence 4567899999999999997664321100000011123468999999999999999999999999999999998 56789
Q ss_pred CcccccchhhHHHHHHHHHHHHHHcccc
Q 023108 246 DDQWIFWVGPFIGAAIAALYHQFILRAS 273 (287)
Q Consensus 246 ~~~wvy~v~p~lGa~~a~~~y~~~~~~~ 273 (287)
.+...|+++|++|+++|+.+.+.+++++
T Consensus 84 ~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~ 111 (281)
T 1ldf_A 84 RKVIPFIVSQVAGAFCAAALVYGLYYNL 111 (281)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999998888887654
No 25
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=99.37 E-value=3.3e-13 Score=121.11 Aligned_cols=106 Identities=18% Similarity=0.232 Sum_probs=84.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcCC--CCCC-CCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCC
Q 023108 166 STGAGLGAEIIGTFVLVYTVFSATDP--KRKA-RDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKD 242 (287)
Q Consensus 166 s~~~~f~~E~l~T~~L~~~vl~~~~~--~~~~-~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~ 242 (287)
+..+.++.||++|++|+++.++.... .... .........++.+|+++++.+++++.+||+++|||++++..+. +.
T Consensus 59 ~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~l~--g~ 136 (304)
T 3cn5_A 59 SFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLA--RK 136 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHT--TS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEeeccCCCccCcHHHHHHHHh--CC
Confidence 45688999999999999987643211 1111 1111123468899999999999999999999999999999997 46
Q ss_pred CCCCcccccchhhHHHHHHHHHHHHHHcccc
Q 023108 243 KAWDDQWIFWVGPFIGAAIAALYHQFILRAS 273 (287)
Q Consensus 243 ~~~~~~wvy~v~p~lGa~~a~~~y~~~~~~~ 273 (287)
..|.+...|+++|++|+++|+.+.+.+++++
T Consensus 137 ~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~ 167 (304)
T 3cn5_A 137 VELLRALVYMIAQCLGAICGVGLVKAFMKGP 167 (304)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7899999999999999999999988888765
No 26
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=99.31 E-value=4.1e-12 Score=112.91 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHHHH
Q 023108 35 WSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 114 (287)
Q Consensus 35 ~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~ 114 (287)
.+..+.++.|+++||+|++..++....... . . -..++.+|+.+....+..++.||+.+|||+++++
T Consensus 166 ~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~--~--------~----~~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GP 231 (279)
T 2w2e_A 166 ASRTRGLFLEAFGTAILCLTVLMLAVEKHR--A--------T----WFAPFVIGIALLIAHLICIYYTGAGLNPARSFGP 231 (279)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTSCST--T--------G----GGHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccCCCC--C--------c----CcHHHHHHHHHHHHHHhcccccccccChHHHHHH
Confidence 356789999999999999988765321111 0 0 1257778888888899999999999999999999
Q ss_pred HHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhh
Q 023108 115 FLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYY 151 (287)
Q Consensus 115 ~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~ 151 (287)
.+....-+...|+||++|++|+++|+++...+...++
T Consensus 232 al~~~~~~~~~WVy~vgPiiGa~la~~ly~~l~~~~~ 268 (279)
T 2w2e_A 232 AVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLNY 268 (279)
T ss_dssp HHHHTCCCTTTTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 9987644557899999999999999999877765443
No 27
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=93.59 E-value=1.3 Score=38.78 Aligned_cols=110 Identities=12% Similarity=0.119 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcc--hhhhhcCC-
Q 023108 80 ILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQK--SYYTRYGG- 156 (287)
Q Consensus 80 ~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~--~~~~~~~~- 156 (287)
.+..++.+.+.+.+.++.-+..-=+ |--.+ ...+.||++|.+.+--|.-=.+|=++|++++-.+.. ......++
T Consensus 68 ~ll~g~~F~vGL~lVvl~G~ELFTg--n~l~~-~a~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~ 144 (285)
T 3kcu_A 68 KLVGGICFSLGLILCVVCGADLFTS--TVLIV-VAKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQ 144 (285)
T ss_dssp HHHHHHHHTHHHHHHHHHTCCCTTT--THHHH-HHHTTTCCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccc--chHHH-HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCchH
Confidence 3445666666666566555443322 42233 335578889888766665555555555554433311 11110000
Q ss_pred -C-----ccccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCC
Q 023108 157 -G-----ANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPK 192 (287)
Q Consensus 157 -~-----~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~~~~ 192 (287)
+ .....-..+..+.|+-=++|.++.++.++.....|
T Consensus 145 ~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~~~ak 186 (285)
T 3kcu_A 145 WGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSYSGR 186 (285)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 00011234567788888888888888887654433
No 28
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=89.75 E-value=1.5 Score=38.03 Aligned_cols=184 Identities=11% Similarity=0.102 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCc-
Q 023108 80 ILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGA- 158 (287)
Q Consensus 80 ~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~- 158 (287)
.+..++.+.+.+.+.+..-+..-=+ |-.......+.|+.+|.+.+--|.-=.+|=++|+.++-.+....- ..+.+.
T Consensus 64 ~ll~g~~F~~Gl~lVvl~g~eLfTg--n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~sg-~~~~~~~ 140 (268)
T 3tds_E 64 KIVMGLSFAIALSLVIMTGTELFTG--NNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTG-LVDKGPV 140 (268)
T ss_dssp HHHHHHTCTHHHHHHHHHTCCCHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TTSSSHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccc--chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCcHH
Confidence 3445555555555555443332111 433333456789999999887777777777777766544432100 000000
Q ss_pred -------cccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 023108 159 -------NELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPAR 231 (287)
Q Consensus 159 -------~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr 231 (287)
....-..+..+.|+-=++|.++..+.++.....|... ..+ +.+ ..-+..+...+..=...|=.
T Consensus 141 ~~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~~~~k~~~-----gKi--~~i--~~pi~~Fv~~GfEH~VANm~- 210 (268)
T 3tds_E 141 AEFFANTAASKASMPFTALFFRGILCNILVCVSVLCSFRTNSDT-----AKI--IMI--FLCLFAIITSGFEHSVANMT- 210 (268)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHSCSCHH-----HHH--HHH--HHHHHHHHHHTCCCHHHHHH-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcCchh-----hHH--HHH--HHHHHHHHHccchHHHHHHH-
Confidence 0001124556778888888888888777544332210 111 111 11112222222222222221
Q ss_pred cHHHHHhcCC--CCCCCcc---ccc-chhhHHHHH-HHHHHHHHHccccccc
Q 023108 232 SFGPAVIYNK--DKAWDDQ---WIF-WVGPFIGAA-IAALYHQFILRASASK 276 (287)
Q Consensus 232 ~lg~~i~~~~--~~~~~~~---wvy-~v~p~lGa~-~a~~~y~~~~~~~~~~ 276 (287)
-+...++.+. +..|.+. +++ .+|.++|+. +-++.|.++++.+++.
T Consensus 211 ~~~~~~~~~~~~~~t~~~~~~nlipvtlGNiiGG~~fvgl~y~~~~~~~~~~ 262 (268)
T 3tds_E 211 IYSVSLFSPTISTVTIGGAIYNLVAVTLGNIVGGALFMGLGTYILGKEKLNA 262 (268)
T ss_dssp HHHHHHHSSSCCSCCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHCCC---
T ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 1222233221 2334321 222 378888874 5677888888765543
No 29
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=86.73 E-value=7.8 Score=33.74 Aligned_cols=107 Identities=12% Similarity=0.139 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcC-ccccccchHHHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcc--hhhhhcCC
Q 023108 80 ILGIAWAFGGMIFVLVYCTAG-ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQK--SYYTRYGG 156 (287)
Q Consensus 80 ~~~~~~~~g~~~~~~i~~~~~-iSGah~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~--~~~~~~~~ 156 (287)
.+..++.+.+.+.+.++.-+. .+|-.+ .++ ..+.||++|.+.+--|.-=.+|=++|+.++-.+.. .... .+.
T Consensus 67 ~ll~g~~F~vGL~lVvl~g~ELFTgn~l---~~~-~~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~-~~~ 141 (280)
T 3kly_A 67 KLLGGLAFSLGLILVVITGGELFTSSVL---ILV-AKASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFM-EDG 141 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCTTTTCC---CCS-SSSSSSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG-TTT
T ss_pred HHHHHHHHHHHHHHHHHccccccccchH---HHH-HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc-CCc
Confidence 344566666666656655544 344333 222 34578889888877776666666666665443321 1111 000
Q ss_pred C--------ccccCCCCcchhhHHHHHHHHHHHHHHHHHhcCC
Q 023108 157 G--------ANELADGYSTGAGLGAEIIGTFVLVYTVFSATDP 191 (287)
Q Consensus 157 ~--------~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~~~~~ 191 (287)
+ .....-..+..+.|+-=++|.++.++.++.....
T Consensus 142 ~~~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~~~a 184 (280)
T 3kly_A 142 GQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSA 184 (280)
T ss_dssp THHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 0 0001123456778888888888888888765543
No 30
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=50.74 E-value=2 Score=38.60 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=18.1
Q ss_pred hcCccccccchHHHHHHHHhcC
Q 023108 98 TAGISGGHINPAVTFGLFLARK 119 (287)
Q Consensus 98 ~~~iSGah~NPavTla~~~~g~ 119 (287)
+++-||||++||++++-.+..+
T Consensus 8 ~~GGTgGHi~palala~~L~~~ 29 (365)
T 3s2u_A 8 MAGGTGGHVFPALACAREFQAR 29 (365)
T ss_dssp ECCSSHHHHHHHHHHHHHHHHT
T ss_pred EcCCCHHHHHHHHHHHHHHHhC
Confidence 3455899999999999998754
No 31
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=42.77 E-value=1.6e+02 Score=25.08 Aligned_cols=107 Identities=10% Similarity=0.067 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCc-cccccchHHHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchh-hhhcCCCc
Q 023108 81 LGIAWAFGGMIFVLVYCTAGI-SGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSY-YTRYGGGA 158 (287)
Q Consensus 81 ~~~~~~~g~~~~~~i~~~~~i-SGah~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~-~~~~~~~~ 158 (287)
+..++.+++.+.+.+..-+.. +| |-.......+.||.+|.+.+--|.-=.+|=++|+.++-.+.... ....+...
T Consensus 59 ll~g~~F~vGl~lVvl~g~eLfTg---n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~~g~~~~~~~~ 135 (261)
T 4fc4_A 59 LVMGATFGIALTLVIIAGSELFTG---HTMFLTLGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDT 135 (261)
T ss_dssp HHHHHHTTHHHHHHHHTCCCCHHH---HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSSCTT
T ss_pred HHHHHHHHHHHHHHHHcCCccccc---chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHH
Confidence 444555555554444332221 11 43333344567889999988887666666666665544333211 00000000
Q ss_pred c---cc---CCCCcchhhHHHHHHHHHHHHHHHHHhcC
Q 023108 159 N---EL---ADGYSTGAGLGAEIIGTFVLVYTVFSATD 190 (287)
Q Consensus 159 ~---~~---~~~~s~~~~f~~E~l~T~~L~~~vl~~~~ 190 (287)
. .. ....+..+.|+-=++|.++..+.++....
T Consensus 136 ~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~~~ 173 (261)
T 4fc4_A 136 SIVHSVALAKTTAPATVLFFKGALCNWLVCLAIWMAIR 173 (261)
T ss_dssp SHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 00 01234466777778888888887775443
Done!