Query 023109
Match_columns 287
No_of_seqs 255 out of 1864
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 08:30:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02940 riboflavin kinase 100.0 7E-40 1.5E-44 286.5 26.7 252 8-259 10-261 (382)
2 PRK10826 2-deoxyglucose-6-phos 100.0 3.4E-31 7.3E-36 217.0 22.7 211 5-216 3-217 (222)
3 PLN02770 haloacid dehalogenase 100.0 7E-31 1.5E-35 218.1 22.0 206 6-214 19-231 (248)
4 COG0546 Gph Predicted phosphat 100.0 7.8E-31 1.7E-35 214.0 21.7 210 7-218 2-217 (220)
5 PLN03243 haloacid dehalogenase 100.0 6.4E-31 1.4E-35 218.7 21.1 208 8-217 23-233 (260)
6 PRK13226 phosphoglycolate phos 100.0 5.9E-31 1.3E-35 216.2 20.2 209 7-217 10-223 (229)
7 TIGR01449 PGP_bact 2-phosphogl 100.0 1.6E-30 3.4E-35 211.8 22.0 204 12-216 1-211 (213)
8 TIGR03351 PhnX-like phosphonat 100.0 9.1E-31 2E-35 214.2 20.6 207 9-216 1-217 (220)
9 PRK13288 pyrophosphatase PpaX; 100.0 1E-30 2.2E-35 213.0 20.5 204 8-217 2-209 (214)
10 PLN02575 haloacid dehalogenase 100.0 2.7E-30 5.9E-35 222.1 22.7 207 8-216 130-339 (381)
11 COG0637 Predicted phosphatase/ 100.0 1.4E-30 3.1E-35 212.0 20.0 188 8-196 1-190 (221)
12 TIGR01422 phosphonatase phosph 100.0 2.1E-30 4.6E-35 216.4 20.6 207 9-216 2-250 (253)
13 PRK11587 putative phosphatase; 100.0 6.1E-30 1.3E-34 208.9 21.3 200 8-215 2-204 (218)
14 PRK10725 fructose-1-P/6-phosph 100.0 1.5E-29 3.2E-34 202.1 21.8 185 5-192 1-186 (188)
15 PRK13478 phosphonoacetaldehyde 100.0 6.2E-30 1.3E-34 215.0 20.2 212 6-218 1-254 (267)
16 PRK10563 6-phosphogluconate ph 100.0 7.5E-30 1.6E-34 208.9 18.3 206 7-216 2-210 (221)
17 TIGR02253 CTE7 HAD superfamily 100.0 1.7E-29 3.7E-34 206.9 19.7 205 9-214 2-220 (221)
18 PRK13222 phosphoglycolate phos 100.0 1E-28 2.2E-33 202.9 23.3 213 5-218 2-221 (226)
19 PRK13223 phosphoglycolate phos 100.0 7.9E-29 1.7E-33 208.2 21.7 210 7-217 11-228 (272)
20 PRK13225 phosphoglycolate phos 100.0 1E-28 2.2E-33 206.7 19.1 203 8-218 61-267 (273)
21 TIGR01454 AHBA_synth_RP 3-amin 100.0 1.6E-28 3.5E-33 198.7 19.7 197 12-216 1-201 (205)
22 TIGR01990 bPGM beta-phosphoglu 100.0 2.9E-28 6.2E-33 194.1 20.6 179 11-192 1-185 (185)
23 TIGR02009 PGMB-YQAB-SF beta-ph 100.0 6E-28 1.3E-32 192.2 20.9 180 9-191 1-185 (185)
24 TIGR02254 YjjG/YfnB HAD superf 100.0 9.1E-28 2E-32 197.0 21.0 202 9-216 1-222 (224)
25 PRK09449 dUMP phosphatase; Pro 100.0 7.2E-28 1.6E-32 197.6 19.9 200 8-217 2-221 (224)
26 KOG2914 Predicted haloacid-hal 100.0 3.4E-27 7.4E-32 188.5 22.2 214 2-215 3-219 (222)
27 PRK06698 bifunctional 5'-methy 100.0 9.5E-28 2.1E-32 216.1 19.3 207 7-218 239-453 (459)
28 PLN02811 hydrolase 100.0 3.8E-27 8.2E-32 192.6 20.8 201 16-216 1-208 (220)
29 PLN02779 haloacid dehalogenase 100.0 1E-26 2.2E-31 196.6 22.3 208 7-217 38-271 (286)
30 TIGR01428 HAD_type_II 2-haloal 100.0 5E-27 1.1E-31 188.9 18.8 180 9-195 1-195 (198)
31 PLN02919 haloacid dehalogenase 99.9 3.7E-26 8.1E-31 221.7 24.5 208 7-215 73-286 (1057)
32 PF13419 HAD_2: Haloacid dehal 99.9 6.3E-27 1.4E-31 184.3 15.2 175 12-191 1-176 (176)
33 PRK14988 GMP/IMP nucleotidase; 99.9 1.5E-26 3.2E-31 189.1 17.9 125 88-215 90-215 (224)
34 TIGR02252 DREG-2 REG-2-like, H 99.9 2.7E-26 5.9E-31 185.4 18.8 178 10-190 1-203 (203)
35 PRK10748 flavin mononucleotide 99.9 1.6E-26 3.4E-31 191.0 17.0 204 6-216 7-236 (238)
36 TIGR01548 HAD-SF-IA-hyp1 haloa 99.9 7.7E-25 1.7E-29 176.0 19.4 173 10-184 1-197 (197)
37 TIGR01509 HAD-SF-IA-v3 haloaci 99.9 2.2E-24 4.7E-29 171.3 18.7 175 11-191 1-183 (183)
38 TIGR02247 HAD-1A3-hyp Epoxide 99.9 1.3E-24 2.9E-29 176.6 16.5 179 9-193 2-197 (211)
39 COG1011 Predicted hydrolase (H 99.9 1.5E-24 3.1E-29 178.6 16.7 127 89-217 97-225 (229)
40 PRK09456 ?-D-glucose-1-phospha 99.9 3.6E-24 7.7E-29 172.4 17.2 176 10-194 1-187 (199)
41 TIGR01993 Pyr-5-nucltdase pyri 99.9 7.8E-24 1.7E-28 168.4 15.1 170 10-191 1-184 (184)
42 PHA02597 30.2 hypothetical pro 99.9 2.4E-23 5.2E-28 167.4 15.2 188 8-215 1-195 (197)
43 TIGR01549 HAD-SF-IA-v1 haloaci 99.9 8.9E-23 1.9E-27 157.6 17.3 154 11-185 1-154 (154)
44 TIGR01493 HAD-SF-IA-v2 Haloaci 99.9 3.3E-23 7.1E-28 163.5 12.3 161 11-184 1-175 (175)
45 TIGR00338 serB phosphoserine p 99.9 8E-23 1.7E-27 167.1 14.1 189 4-211 9-210 (219)
46 KOG3085 Predicted hydrolase (H 99.9 6.4E-22 1.4E-26 158.7 15.0 188 6-195 4-216 (237)
47 PRK08238 hypothetical protein; 99.9 6E-23 1.3E-27 183.4 9.7 209 8-244 9-220 (479)
48 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.9 3.5E-21 7.6E-26 155.3 15.9 178 8-195 3-193 (201)
49 TIGR00213 GmhB_yaeD D,D-heptos 99.9 2E-21 4.4E-26 153.1 13.1 123 90-215 25-175 (176)
50 TIGR01691 enolase-ppase 2,3-di 99.9 6.7E-20 1.5E-24 148.2 21.7 184 9-195 1-199 (220)
51 PLN02954 phosphoserine phospha 99.9 6.1E-21 1.3E-25 156.5 15.3 194 7-216 10-221 (224)
52 PRK08942 D,D-heptose 1,7-bisph 99.9 2.2E-21 4.8E-26 153.7 11.6 125 90-217 28-175 (181)
53 PRK06769 hypothetical protein; 99.9 2.5E-21 5.4E-26 151.8 9.9 126 90-216 27-169 (173)
54 PRK11133 serB phosphoserine ph 99.9 2.8E-20 6.1E-25 158.7 16.1 184 7-209 108-304 (322)
55 TIGR01656 Histidinol-ppas hist 99.8 6.7E-21 1.4E-25 145.6 10.6 104 90-194 26-147 (147)
56 TIGR01672 AphA HAD superfamily 99.8 5.8E-19 1.2E-23 143.8 15.8 146 11-197 65-216 (237)
57 TIGR01662 HAD-SF-IIIA HAD-supe 99.8 1.7E-19 3.7E-24 135.5 11.4 97 91-192 25-131 (132)
58 TIGR01685 MDP-1 magnesium-depe 99.8 2E-20 4.4E-25 145.2 6.0 107 88-195 42-160 (174)
59 TIGR01261 hisB_Nterm histidino 99.8 2.6E-19 5.6E-24 138.1 10.8 102 90-194 28-149 (161)
60 PRK09552 mtnX 2-hydroxy-3-keto 99.8 3.1E-18 6.7E-23 139.8 16.2 190 10-217 4-211 (219)
61 KOG3109 Haloacid dehalogenase- 99.8 3E-18 6.5E-23 132.8 14.2 182 6-193 12-206 (244)
62 PRK13582 thrH phosphoserine ph 99.8 2.4E-18 5.1E-23 139.2 14.0 188 9-218 1-195 (205)
63 TIGR01664 DNA-3'-Pase DNA 3'-p 99.8 4.3E-18 9.4E-23 132.2 10.9 96 92-190 43-160 (166)
64 cd01427 HAD_like Haloacid deha 99.8 6.5E-18 1.4E-22 127.2 11.1 104 87-191 20-139 (139)
65 TIGR01489 DKMTPPase-SF 2,3-dik 99.8 2.7E-17 5.7E-22 131.1 14.7 97 88-188 69-185 (188)
66 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.7 2.5E-16 5.4E-21 127.0 15.3 180 11-193 1-199 (202)
67 TIGR02137 HSK-PSP phosphoserin 99.7 7.8E-16 1.7E-20 123.5 17.7 159 10-193 2-172 (203)
68 COG0560 SerB Phosphoserine pho 99.7 1.8E-16 3.8E-21 127.8 13.9 103 90-193 76-188 (212)
69 TIGR01452 PGP_euk phosphoglyco 99.7 4.2E-17 9.1E-22 137.9 9.7 121 93-214 145-279 (279)
70 TIGR01670 YrbI-phosphatas 3-de 99.7 1.4E-17 3E-22 128.1 5.7 101 99-212 36-136 (154)
71 TIGR03333 salvage_mtnX 2-hydro 99.7 6E-16 1.3E-20 125.8 15.3 161 12-186 2-177 (214)
72 TIGR02726 phenyl_P_delta pheny 99.7 2E-17 4.3E-22 128.2 6.1 100 99-211 42-141 (169)
73 TIGR01668 YqeG_hyp_ppase HAD s 99.7 5.1E-16 1.1E-20 121.4 13.5 98 91-198 43-142 (170)
74 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.7 3.3E-17 7.1E-22 136.6 7.2 123 93-216 122-252 (257)
75 TIGR01488 HAD-SF-IB Haloacid D 99.7 2.1E-15 4.6E-20 119.0 16.0 96 88-184 70-177 (177)
76 PRK05446 imidazole glycerol-ph 99.7 6.7E-16 1.5E-20 132.6 13.2 102 89-193 28-149 (354)
77 TIGR01681 HAD-SF-IIIC HAD-supe 99.7 1.6E-16 3.4E-21 118.3 7.9 88 91-183 29-126 (128)
78 PF00702 Hydrolase: haloacid d 99.7 4.3E-16 9.4E-21 126.7 9.9 90 90-185 126-215 (215)
79 PHA02530 pseT polynucleotide k 99.6 1.6E-15 3.4E-20 129.9 12.2 105 89-194 185-298 (300)
80 PRK11009 aphA acid phosphatase 99.6 4.6E-15 1E-19 120.9 13.6 99 89-197 112-216 (237)
81 PRK10444 UMP phosphatase; Prov 99.6 3.5E-16 7.7E-21 129.3 6.8 77 138-214 164-245 (248)
82 PRK11590 hypothetical protein; 99.6 3.1E-14 6.6E-19 115.5 17.6 181 8-193 5-204 (211)
83 COG2179 Predicted hydrolase of 99.6 6.1E-15 1.3E-19 110.1 11.2 92 92-193 47-139 (175)
84 PRK09484 3-deoxy-D-manno-octul 99.6 2.4E-15 5.2E-20 119.0 7.8 98 99-209 56-153 (183)
85 PLN02645 phosphoglycolate phos 99.6 9.5E-16 2.1E-20 131.4 5.0 115 101-216 180-305 (311)
86 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.6 3.5E-15 7.5E-20 123.9 7.4 119 94-214 124-249 (249)
87 COG4229 Predicted enolase-phos 99.5 5.3E-13 1.2E-17 100.7 15.3 121 89-212 101-224 (229)
88 PRK10530 pyridoxal phosphate ( 99.5 7E-14 1.5E-18 118.0 10.3 117 93-213 139-260 (272)
89 PF06888 Put_Phosphatase: Puta 99.5 1.2E-12 2.6E-17 106.1 15.5 169 11-193 2-197 (234)
90 smart00577 CPDc catalytic doma 99.5 3.8E-14 8.2E-19 108.3 6.1 97 89-190 43-140 (148)
91 COG0241 HisB Histidinol phosph 99.5 6E-13 1.3E-17 102.9 12.2 123 90-215 30-173 (181)
92 COG0647 NagD Predicted sugar p 99.5 9E-14 2E-18 114.7 6.8 73 145-217 187-264 (269)
93 TIGR01545 YfhB_g-proteo haloac 99.5 5.6E-12 1.2E-16 101.8 16.4 103 89-193 92-203 (210)
94 PRK01158 phosphoglycolate phos 99.5 9.5E-14 2.1E-18 114.3 6.0 98 110-213 118-218 (230)
95 TIGR01686 FkbH FkbH-like domai 99.4 2.6E-13 5.6E-18 116.9 8.1 90 92-187 32-125 (320)
96 TIGR01663 PNK-3'Pase polynucle 99.4 7.5E-13 1.6E-17 119.3 10.8 92 92-186 198-305 (526)
97 TIGR02244 HAD-IG-Ncltidse HAD 99.4 2.9E-11 6.3E-16 103.3 18.4 103 90-193 183-324 (343)
98 TIGR01482 SPP-subfamily Sucros 99.4 3.6E-13 7.9E-18 110.4 6.2 100 110-213 110-210 (225)
99 PF13242 Hydrolase_like: HAD-h 99.4 1.1E-12 2.4E-17 88.0 7.1 69 146-214 2-75 (75)
100 TIGR01544 HAD-SF-IE haloacid d 99.4 1.7E-11 3.7E-16 101.6 13.7 96 88-184 118-230 (277)
101 PRK10513 sugar phosphate phosp 99.4 7.5E-12 1.6E-16 105.5 11.4 65 146-213 193-257 (270)
102 KOG1615 Phosphoserine phosphat 99.3 5.1E-12 1.1E-16 96.5 8.1 187 8-211 15-218 (227)
103 TIGR01460 HAD-SF-IIA Haloacid 99.3 4.2E-12 9E-17 104.7 7.3 49 145-193 185-235 (236)
104 TIGR01487 SPP-like sucrose-pho 99.3 2.5E-11 5.4E-16 98.8 10.9 98 110-212 110-207 (215)
105 TIGR01456 CECR5 HAD-superfamil 99.3 1.3E-10 2.8E-15 100.2 15.0 73 145-217 230-319 (321)
106 PRK10976 putative hydrolase; P 99.3 3.9E-11 8.4E-16 101.0 10.4 66 145-213 186-253 (266)
107 COG0561 Cof Predicted hydrolas 99.2 7E-12 1.5E-16 105.3 5.4 67 144-213 184-250 (264)
108 COG1778 Low specificity phosph 99.2 2.7E-12 5.9E-17 94.8 2.2 97 99-208 43-139 (170)
109 PF12689 Acid_PPase: Acid Phos 99.2 1.5E-11 3.2E-16 94.8 6.3 103 88-196 42-155 (169)
110 PF12710 HAD: haloacid dehalog 99.2 6.4E-11 1.4E-15 94.6 10.2 85 94-182 92-192 (192)
111 PRK00192 mannosyl-3-phosphogly 99.2 4.2E-10 9.1E-15 95.0 15.0 45 149-193 190-235 (273)
112 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.2 6.3E-11 1.4E-15 98.2 8.6 89 92-186 25-116 (242)
113 PRK15126 thiamin pyrimidine py 99.2 1.7E-11 3.6E-16 103.5 4.3 68 143-213 182-251 (272)
114 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.2 3.3E-11 7.1E-16 99.9 5.7 99 93-193 140-242 (242)
115 TIGR01533 lipo_e_P4 5'-nucleot 99.2 1.2E-09 2.6E-14 90.6 13.9 87 88-182 115-205 (266)
116 PTZ00445 p36-lilke protein; Pr 99.1 6.8E-10 1.5E-14 87.2 10.9 101 92-193 76-206 (219)
117 KOG3120 Predicted haloacid deh 99.1 1.5E-09 3.3E-14 84.8 12.1 172 8-193 12-211 (256)
118 TIGR01684 viral_ppase viral ph 99.1 4.4E-10 9.6E-15 93.0 8.7 59 94-153 149-207 (301)
119 PLN02887 hydrolase family prot 99.1 4.7E-10 1E-14 102.8 9.7 68 143-213 501-568 (580)
120 PF08645 PNK3P: Polynucleotide 99.1 3.6E-10 7.8E-15 87.0 7.1 95 92-189 30-153 (159)
121 PF08282 Hydrolase_3: haloacid 99.1 1.3E-09 2.7E-14 90.6 10.3 65 146-213 183-247 (254)
122 PF09419 PGP_phosphatase: Mito 99.1 3.6E-09 7.7E-14 81.3 11.8 91 93-194 61-166 (168)
123 TIGR02471 sucr_syn_bact_C sucr 99.0 8.4E-10 1.8E-14 91.2 8.7 61 142-205 152-212 (236)
124 KOG2882 p-Nitrophenyl phosphat 99.0 4.8E-10 1E-14 92.1 6.7 73 144-216 220-301 (306)
125 KOG3040 Predicted sugar phosph 99.0 1.7E-10 3.7E-15 89.2 3.7 73 144-216 177-254 (262)
126 PRK03669 mannosyl-3-phosphogly 99.0 1.2E-09 2.6E-14 92.1 8.3 52 142-193 180-234 (271)
127 TIGR02463 MPGP_rel mannosyl-3- 99.0 1.3E-08 2.9E-13 83.1 14.3 45 146-190 176-220 (221)
128 TIGR00099 Cof-subfamily Cof su 99.0 6.9E-10 1.5E-14 92.8 5.8 67 144-213 183-249 (256)
129 TIGR02251 HIF-SF_euk Dullard-l 98.9 4.2E-10 9.2E-15 87.1 3.0 100 89-193 40-140 (162)
130 TIGR01525 ATPase-IB_hvy heavy 98.9 4E-09 8.7E-14 97.7 9.5 112 90-216 383-497 (556)
131 TIGR01512 ATPase-IB2_Cd heavy 98.9 2.7E-09 5.8E-14 98.3 7.7 115 89-217 360-477 (536)
132 KOG2630 Enolase-phosphatase E- 98.9 2E-07 4.4E-12 73.6 16.5 119 89-214 121-248 (254)
133 COG4359 Uncharacterized conser 98.9 1.1E-07 2.4E-12 72.5 13.0 157 11-186 5-180 (220)
134 TIGR01486 HAD-SF-IIB-MPGP mann 98.8 7.5E-09 1.6E-13 86.6 6.3 69 143-211 170-243 (256)
135 TIGR01485 SPP_plant-cyano sucr 98.8 6.7E-08 1.5E-12 80.5 10.6 52 142-193 160-211 (249)
136 TIGR01511 ATPase-IB1_Cu copper 98.8 1.7E-08 3.6E-13 93.5 7.6 111 90-216 404-516 (562)
137 PF05761 5_nucleotid: 5' nucle 98.8 1.4E-07 3.1E-12 83.9 13.1 104 90-193 182-325 (448)
138 PF06941 NT5C: 5' nucleotidase 98.8 1E-08 2.2E-13 81.9 4.9 171 10-217 2-184 (191)
139 PHA03398 viral phosphatase sup 98.7 4.6E-08 1E-12 81.2 7.8 51 94-145 151-201 (303)
140 TIGR01522 ATPase-IIA2_Ca golgi 98.7 2.9E-08 6.2E-13 96.6 7.4 124 91-217 528-669 (884)
141 TIGR02461 osmo_MPG_phos mannos 98.7 3.9E-08 8.5E-13 80.4 5.6 44 147-190 179-224 (225)
142 PRK10671 copA copper exporting 98.7 1.2E-07 2.5E-12 92.1 9.7 114 90-218 649-764 (834)
143 smart00775 LNS2 LNS2 domain. T 98.6 8.3E-07 1.8E-11 68.3 10.9 93 92-187 28-141 (157)
144 COG4087 Soluble P-type ATPase 98.6 2.2E-07 4.8E-12 66.7 6.9 121 89-220 28-148 (152)
145 TIGR02250 FCP1_euk FCP1-like p 98.6 5E-08 1.1E-12 74.8 3.8 80 89-176 56-138 (156)
146 PRK10187 trehalose-6-phosphate 98.6 3.9E-07 8.4E-12 76.5 9.1 69 145-220 170-242 (266)
147 TIGR01675 plant-AP plant acid 98.5 4E-06 8.7E-11 67.9 13.2 103 88-193 117-223 (229)
148 PF13344 Hydrolase_6: Haloacid 98.5 1.6E-06 3.5E-11 61.4 9.0 84 91-186 14-100 (101)
149 PLN02177 glycerol-3-phosphate 98.5 1.4E-05 3.1E-10 72.5 17.1 93 92-193 111-216 (497)
150 COG4996 Predicted phosphatase 98.4 2.6E-07 5.6E-12 66.3 4.4 91 89-185 39-137 (164)
151 PLN02382 probable sucrose-phos 98.4 3E-06 6.6E-11 75.4 11.4 50 144-193 170-223 (413)
152 PRK11033 zntA zinc/cadmium/mer 98.4 3E-06 6.4E-11 81.1 10.6 109 90-215 567-677 (741)
153 PF03767 Acid_phosphat_B: HAD 98.3 5.9E-07 1.3E-11 73.5 4.6 99 90-193 114-223 (229)
154 PRK14010 potassium-transportin 98.3 2.9E-06 6.3E-11 79.5 9.6 111 91-216 441-553 (673)
155 TIGR01116 ATPase-IIA1_Ca sarco 98.3 1.2E-06 2.5E-11 85.8 7.3 123 91-217 537-681 (917)
156 PF05116 S6PP: Sucrose-6F-phos 98.3 4.6E-06 9.9E-11 69.3 9.6 49 144-193 160-208 (247)
157 TIGR01497 kdpB K+-transporting 98.3 2.6E-06 5.7E-11 79.7 8.6 103 91-208 446-548 (675)
158 PRK14502 bifunctional mannosyl 98.3 5.4E-05 1.2E-09 70.2 16.2 48 146-193 610-659 (694)
159 PRK01122 potassium-transportin 98.3 4.2E-06 9E-11 78.5 9.0 111 90-215 444-556 (679)
160 COG2217 ZntA Cation transport 98.2 5.7E-06 1.2E-10 77.8 8.8 112 90-216 536-649 (713)
161 TIGR01680 Veg_Stor_Prot vegeta 98.2 5.7E-05 1.2E-09 62.4 12.8 91 88-182 142-239 (275)
162 PF03031 NIF: NLI interacting 98.2 2.5E-06 5.5E-11 65.9 4.6 85 89-178 34-119 (159)
163 PRK12702 mannosyl-3-phosphogly 98.2 1.2E-05 2.6E-10 67.1 8.6 45 147-191 206-252 (302)
164 PF11019 DUF2608: Protein of u 98.1 0.00012 2.7E-09 60.7 14.4 102 90-193 80-210 (252)
165 TIGR01647 ATPase-IIIA_H plasma 98.1 7.3E-06 1.6E-10 78.7 7.6 111 91-208 442-574 (755)
166 TIGR01517 ATPase-IIB_Ca plasma 98.1 1.1E-05 2.4E-10 79.4 8.2 122 91-215 579-718 (941)
167 TIGR01524 ATPase-IIIB_Mg magne 98.1 1.4E-05 3E-10 77.9 8.4 122 90-217 514-653 (867)
168 PRK10517 magnesium-transportin 98.1 1.2E-05 2.6E-10 78.4 7.9 122 90-217 549-688 (902)
169 PRK15122 magnesium-transportin 98.0 2E-05 4.3E-10 77.0 9.0 122 91-218 550-689 (903)
170 COG3700 AphA Acid phosphatase 98.0 5.3E-05 1.1E-09 57.7 8.6 92 93-193 116-212 (237)
171 TIGR01523 ATPase-IID_K-Na pota 98.0 2.3E-05 4.9E-10 77.7 8.6 123 90-215 645-795 (1053)
172 PRK14501 putative bifunctional 97.9 2.1E-05 4.5E-10 75.5 7.0 67 145-217 653-719 (726)
173 COG0474 MgtA Cation transport 97.9 3.2E-05 7E-10 75.7 8.4 105 89-194 545-667 (917)
174 PLN02645 phosphoglycolate phos 97.9 0.00015 3.2E-09 62.5 10.6 90 91-190 44-136 (311)
175 COG5663 Uncharacterized conser 97.9 7.1E-05 1.5E-09 56.4 7.4 96 89-198 70-167 (194)
176 TIGR01106 ATPase-IIC_X-K sodiu 97.8 5.6E-05 1.2E-09 74.8 8.2 117 91-210 568-726 (997)
177 KOG3110 Riboflavin kinase [Coe 97.8 1.1E-05 2.4E-10 57.9 2.1 43 229-271 5-53 (153)
178 PTZ00174 phosphomannomutase; P 97.8 3.9E-05 8.5E-10 63.8 5.7 29 97-125 28-56 (247)
179 KOG0202 Ca2+ transporting ATPa 97.7 0.00011 2.4E-09 68.6 7.9 104 90-194 583-706 (972)
180 PLN02423 phosphomannomutase 97.7 4.9E-06 1.1E-10 69.0 -1.5 45 144-193 184-232 (245)
181 COG2503 Predicted secreted aci 97.7 0.00051 1.1E-08 55.2 9.8 87 89-183 120-211 (274)
182 TIGR01689 EcbF-BcbF capsule bi 97.6 0.00015 3.2E-09 53.3 5.2 30 91-120 24-53 (126)
183 COG3882 FkbH Predicted enzyme 97.6 0.00059 1.3E-08 60.2 9.5 92 95-193 259-354 (574)
184 PLN02205 alpha,alpha-trehalose 97.6 0.0003 6.5E-09 68.1 8.5 68 146-219 759-842 (854)
185 TIGR02245 HAD_IIID1 HAD-superf 97.5 0.00043 9.4E-09 54.9 7.7 39 91-131 45-83 (195)
186 KOG0207 Cation transport ATPas 97.5 0.00034 7.4E-09 66.1 8.1 113 90-217 722-836 (951)
187 KOG2470 Similar to IMP-GMP spe 97.5 0.00062 1.4E-08 57.5 8.7 103 90-193 239-376 (510)
188 PF05152 DUF705: Protein of un 97.5 0.00057 1.2E-08 56.4 8.0 49 93-142 144-192 (297)
189 TIGR01484 HAD-SF-IIB HAD-super 97.5 0.00013 2.9E-09 58.6 4.1 47 144-190 158-204 (204)
190 COG5610 Predicted hydrolase (H 97.4 0.00046 9.9E-09 60.4 7.0 100 91-191 99-201 (635)
191 TIGR01657 P-ATPase-V P-type AT 97.4 0.0017 3.8E-08 64.9 11.4 103 90-193 655-829 (1054)
192 PLN02499 glycerol-3-phosphate 97.4 0.0042 9.2E-08 55.8 12.4 87 99-193 101-198 (498)
193 TIGR00685 T6PP trehalose-phosp 97.3 0.00021 4.6E-09 59.2 4.0 67 147-217 165-238 (244)
194 TIGR01494 ATPase_P-type ATPase 97.2 0.0017 3.7E-08 59.8 9.1 98 90-210 346-443 (499)
195 PF08235 LNS2: LNS2 (Lipin/Ned 97.2 0.0029 6.3E-08 48.2 8.6 90 92-187 28-141 (157)
196 TIGR01652 ATPase-Plipid phosph 97.2 0.00034 7.4E-09 69.9 4.4 127 89-218 629-819 (1057)
197 KOG2469 IMP-GMP specific 5'-nu 96.9 0.016 3.5E-07 50.3 11.3 102 92-193 199-334 (424)
198 PLN03190 aminophospholipid tra 96.9 0.00093 2E-08 67.0 4.2 128 89-219 724-923 (1178)
199 COG0647 NagD Predicted sugar p 96.8 0.007 1.5E-07 50.5 8.3 89 90-189 23-114 (269)
200 TIGR01484 HAD-SF-IIB HAD-super 96.6 0.0047 1E-07 49.6 5.7 34 94-128 20-53 (204)
201 COG2216 KdpB High-affinity K+ 96.5 0.0049 1.1E-07 55.1 5.3 91 91-193 447-537 (681)
202 TIGR01452 PGP_euk phosphoglyco 96.4 0.02 4.2E-07 48.6 8.5 87 92-189 19-108 (279)
203 COG4030 Uncharacterized protei 96.3 0.1 2.2E-06 42.0 11.0 41 89-131 81-121 (315)
204 KOG0204 Calcium transporting A 96.2 0.015 3.2E-07 55.1 6.9 113 90-208 646-779 (1034)
205 TIGR01658 EYA-cons_domain eyes 96.1 0.041 8.9E-07 44.7 8.2 80 110-194 178-259 (274)
206 KOG2134 Polynucleotide kinase 95.1 0.047 1E-06 47.2 5.4 96 91-189 104-230 (422)
207 PF05822 UMPH-1: Pyrimidine 5' 95.0 0.042 9.1E-07 45.1 4.7 95 88-184 87-198 (246)
208 PLN02580 trehalose-phosphatase 94.7 0.063 1.4E-06 47.2 5.3 65 149-218 301-373 (384)
209 PLN02151 trehalose-phosphatase 94.5 0.075 1.6E-06 46.2 5.2 34 91-125 120-153 (354)
210 KOG0206 P-type ATPase [General 94.3 0.32 7E-06 48.6 9.7 55 71-125 624-685 (1151)
211 KOG3128 Uncharacterized conser 94.1 0.14 3E-06 41.9 5.5 95 89-185 136-248 (298)
212 PLN03017 trehalose-phosphatase 94.1 0.14 3E-06 44.8 5.9 13 9-21 111-123 (366)
213 PRK10444 UMP phosphatase; Prov 94.0 0.38 8.3E-06 40.0 8.3 49 92-141 18-69 (248)
214 PTZ00174 phosphomannomutase; P 93.7 0.079 1.7E-06 44.0 3.7 47 143-193 182-232 (247)
215 KOG2961 Predicted hydrolase (H 93.6 0.39 8.6E-06 36.1 6.8 96 92-195 62-170 (190)
216 TIGR01460 HAD-SF-IIA Haloacid 93.5 0.55 1.2E-05 38.7 8.4 86 91-187 14-102 (236)
217 COG3769 Predicted hydrolase (H 93.4 0.11 2.4E-06 41.6 3.8 34 98-132 30-63 (274)
218 TIGR01457 HAD-SF-IIA-hyp2 HAD- 93.3 0.19 4.1E-06 41.8 5.4 49 92-141 18-69 (249)
219 PLN02580 trehalose-phosphatase 93.2 0.079 1.7E-06 46.6 3.1 14 9-22 119-132 (384)
220 COG4850 Uncharacterized conser 93.1 0.89 1.9E-05 38.7 8.9 85 89-180 194-293 (373)
221 TIGR01458 HAD-SF-IIA-hyp3 HAD- 93.1 0.15 3.2E-06 42.7 4.5 49 92-141 22-73 (257)
222 COG1877 OtsB Trehalose-6-phosp 92.9 0.16 3.5E-06 42.4 4.3 36 90-125 39-75 (266)
223 PF06189 5-nucleotidase: 5'-nu 92.9 1.5 3.3E-05 36.2 9.8 73 107-194 186-260 (264)
224 KOG0209 P-type ATPase [Inorgan 91.9 0.5 1.1E-05 45.2 6.6 106 89-195 673-836 (1160)
225 COG4502 5'(3')-deoxyribonucleo 91.5 0.45 9.6E-06 35.3 4.6 85 88-195 65-154 (180)
226 KOG1618 Predicted phosphatase 89.6 1.1 2.3E-05 38.2 5.9 20 11-30 37-56 (389)
227 PF02358 Trehalose_PPase: Treh 89.6 0.49 1.1E-05 38.9 4.0 34 91-124 19-53 (235)
228 KOG2882 p-Nitrophenyl phosphat 89.5 8.1 0.00018 32.7 10.9 97 89-194 36-134 (306)
229 KOG0323 TFIIF-interacting CTD 89.4 0.86 1.9E-05 42.7 5.8 78 89-176 199-281 (635)
230 PRK00192 mannosyl-3-phosphogly 89.4 0.77 1.7E-05 38.6 5.2 41 94-135 24-64 (273)
231 KOG2116 Protein involved in pl 89.0 1.9 4.2E-05 40.2 7.6 21 167-187 652-672 (738)
232 PLN03063 alpha,alpha-trehalose 87.7 0.92 2E-05 44.4 5.1 35 91-125 532-567 (797)
233 TIGR02461 osmo_MPG_phos mannos 87.4 1.3 2.9E-05 36.1 5.2 39 94-133 18-56 (225)
234 PLN03064 alpha,alpha-trehalose 87.1 1.1 2.4E-05 44.3 5.2 39 90-129 621-660 (934)
235 KOG0203 Na+/K+ ATPase, alpha s 86.3 1.5 3.3E-05 42.2 5.4 101 91-194 590-734 (1019)
236 TIGR01456 CECR5 HAD-superfamil 86.2 4.2 9.2E-05 35.2 7.9 87 91-190 16-109 (321)
237 TIGR01487 SPP-like sucrose-pho 86.2 1.3 2.8E-05 35.7 4.5 40 92-132 19-58 (215)
238 TIGR02463 MPGP_rel mannosyl-3- 86.0 1.6 3.4E-05 35.4 4.9 36 96-132 21-56 (221)
239 PRK01158 phosphoglycolate phos 85.9 1.4 3.1E-05 35.8 4.7 40 93-133 22-61 (230)
240 PRK15126 thiamin pyrimidine py 84.5 1.8 3.9E-05 36.3 4.8 40 93-133 21-60 (272)
241 TIGR00099 Cof-subfamily Cof su 84.4 2.1 4.6E-05 35.5 5.1 39 93-132 18-56 (256)
242 KOG3107 Predicted haloacid deh 83.9 5.2 0.00011 34.9 7.1 79 109-193 372-452 (468)
243 TIGR00685 T6PP trehalose-phosp 83.5 0.64 1.4E-05 38.4 1.6 15 9-23 3-17 (244)
244 TIGR01482 SPP-subfamily Sucros 82.8 2.3 5E-05 34.4 4.6 38 94-132 18-55 (225)
245 PRK10530 pyridoxal phosphate ( 82.8 2.5 5.4E-05 35.3 4.9 39 93-132 22-60 (272)
246 PF13580 SIS_2: SIS domain; PD 82.0 15 0.00032 27.4 8.3 99 94-192 22-137 (138)
247 PRK12702 mannosyl-3-phosphogly 81.9 2.8 6E-05 35.6 4.7 39 95-134 22-60 (302)
248 TIGR01486 HAD-SF-IIB-MPGP mann 81.5 3.3 7.2E-05 34.4 5.2 37 95-132 20-56 (256)
249 COG0561 Cof Predicted hydrolas 80.8 2.9 6.3E-05 34.8 4.6 40 93-133 22-61 (264)
250 KOG0205 Plasma membrane H+-tra 79.6 8 0.00017 36.5 7.1 117 91-211 492-627 (942)
251 KOG3040 Predicted sugar phosph 79.3 6.6 0.00014 31.5 5.6 40 92-132 24-66 (262)
252 cd04728 ThiG Thiazole synthase 78.7 36 0.00078 28.1 10.5 96 91-195 104-207 (248)
253 KOG0210 P-type ATPase [Inorgan 78.4 3.7 8E-05 38.9 4.7 121 90-218 710-832 (1051)
254 PF04413 Glycos_transf_N: 3-De 78.0 2.4 5.3E-05 33.5 3.1 77 89-178 103-184 (186)
255 COG0731 Fe-S oxidoreductases [ 78.0 9.1 0.0002 32.6 6.6 37 89-125 90-127 (296)
256 smart00577 CPDc catalytic doma 77.9 1.5 3.4E-05 33.1 1.9 15 10-24 3-17 (148)
257 COG5083 SMP2 Uncharacterized p 77.3 2.9 6.3E-05 37.2 3.5 19 7-25 373-391 (580)
258 PRK03669 mannosyl-3-phosphogly 77.1 4.5 9.8E-05 33.9 4.7 37 95-132 28-64 (271)
259 PLN02588 glycerol-3-phosphate 76.6 3.9 8.5E-05 37.4 4.3 38 100-142 139-176 (525)
260 PRK00994 F420-dependent methyl 75.3 44 0.00096 27.4 9.5 82 106-193 30-117 (277)
261 PRK11840 bifunctional sulfur c 74.3 46 0.00099 28.8 9.8 96 91-195 178-281 (326)
262 TIGR02251 HIF-SF_euk Dullard-l 74.2 1.9 4.1E-05 33.2 1.5 15 10-24 2-16 (162)
263 KOG3189 Phosphomannomutase [Li 74.1 2.7 5.9E-05 33.3 2.3 26 10-35 12-37 (252)
264 PF02358 Trehalose_PPase: Treh 72.8 6 0.00013 32.4 4.3 41 147-187 163-206 (235)
265 KOG4549 Magnesium-dependent ph 72.4 23 0.00051 25.9 6.5 81 89-175 42-132 (144)
266 PLN03017 trehalose-phosphatase 69.6 3.5 7.5E-05 36.2 2.2 67 149-219 283-356 (366)
267 PRK00208 thiG thiazole synthas 68.1 69 0.0015 26.6 10.5 96 91-195 104-207 (250)
268 KOG2832 TFIIF-interacting CTD 65.7 20 0.00044 31.3 5.9 80 91-175 214-293 (393)
269 PF05690 ThiG: Thiazole biosyn 65.0 72 0.0016 26.3 8.6 95 91-193 104-205 (247)
270 PF01687 Flavokinase: Riboflav 63.4 3.3 7.2E-05 30.4 0.8 24 235-259 4-27 (125)
271 CHL00162 thiG thiamin biosynth 62.5 91 0.002 26.0 9.7 95 91-194 118-220 (267)
272 PLN02151 trehalose-phosphatase 62.2 5.7 0.00012 34.8 2.1 67 148-219 268-342 (354)
273 TIGR01485 SPP_plant-cyano sucr 62.1 15 0.00033 30.3 4.6 44 95-140 25-68 (249)
274 COG3769 Predicted hydrolase (H 61.8 30 0.00064 28.2 5.8 91 93-191 136-235 (274)
275 PF06437 ISN1: IMP-specific 5' 60.6 11 0.00024 33.1 3.5 16 8-23 146-161 (408)
276 TIGR02329 propionate_PrpR prop 59.0 70 0.0015 29.9 8.7 89 94-194 84-172 (526)
277 PTZ00445 p36-lilke protein; Pr 58.8 4.2 9.1E-05 32.7 0.7 16 7-22 41-56 (219)
278 PLN02887 hydrolase family prot 57.6 18 0.00038 34.2 4.6 41 91-132 325-365 (580)
279 TIGR00236 wecB UDP-N-acetylglu 57.4 75 0.0016 27.7 8.5 97 96-193 16-118 (365)
280 KOG1605 TFIIF-interacting CTD 56.0 2.3 5E-05 35.4 -1.2 93 90-187 130-223 (262)
281 KOG0208 Cation transport ATPas 55.9 36 0.00078 34.0 6.3 45 90-135 704-748 (1140)
282 cd05007 SIS_Etherase N-acetylm 55.6 1.2E+02 0.0026 25.3 11.5 107 99-208 42-167 (257)
283 smart00540 LEM in nuclear memb 54.9 13 0.00029 21.6 2.2 29 97-125 9-37 (44)
284 PRK14502 bifunctional mannosyl 54.0 25 0.00053 33.8 4.9 38 94-132 436-473 (694)
285 PF04413 Glycos_transf_N: 3-De 53.2 1.1E+02 0.0024 24.1 8.2 87 96-194 37-127 (186)
286 PRK15424 propionate catabolism 51.0 1.1E+02 0.0024 28.7 8.7 89 94-194 94-182 (538)
287 PF06506 PrpR_N: Propionate ca 50.9 23 0.00051 27.5 3.8 87 95-194 65-152 (176)
288 TIGR02471 sucr_syn_bact_C sucr 50.1 34 0.00073 27.9 4.8 39 99-140 23-61 (236)
289 PF03332 PMM: Eukaryotic phosp 49.1 26 0.00056 28.4 3.7 44 96-141 1-44 (220)
290 TIGR00221 nagA N-acetylglucosa 45.9 1.9E+02 0.0041 25.7 9.1 36 90-125 173-209 (380)
291 TIGR02468 sucrsPsyn_pln sucros 45.8 82 0.0018 32.1 7.2 50 144-193 951-1002(1050)
292 KOG0780 Signal recognition par 45.0 1.5E+02 0.0033 26.5 7.9 47 134-181 183-230 (483)
293 PF10490 CENP-F_C_Rb_bdg: Rb-b 44.9 13 0.00029 21.7 1.1 17 255-271 16-32 (49)
294 PF02350 Epimerase_2: UDP-N-ac 44.5 41 0.00089 29.5 4.7 91 102-194 2-100 (346)
295 KOG1605 TFIIF-interacting CTD 44.5 14 0.00031 30.8 1.7 17 8-24 88-104 (262)
296 PRK15317 alkyl hydroperoxide r 44.4 1.5E+02 0.0033 27.5 8.6 103 89-193 127-242 (517)
297 smart00266 CAD Domains present 44.0 23 0.00049 23.3 2.2 20 9-28 38-57 (74)
298 PF01993 MTD: methylene-5,6,7, 43.7 89 0.0019 25.8 5.9 81 107-193 30-116 (276)
299 PRK13762 tRNA-modifying enzyme 42.7 43 0.00094 29.0 4.4 31 89-119 140-170 (322)
300 cd06537 CIDE_N_B CIDE_N domain 42.1 26 0.00056 23.4 2.3 19 10-28 40-58 (81)
301 cd06539 CIDE_N_A CIDE_N domain 42.1 26 0.00057 23.3 2.3 20 9-28 40-59 (78)
302 cd01615 CIDE_N CIDE_N domain, 40.6 26 0.00057 23.3 2.1 20 9-28 40-59 (78)
303 KOG0210 P-type ATPase [Inorgan 40.3 42 0.00091 32.3 4.1 36 90-125 657-692 (1051)
304 TIGR00262 trpA tryptophan synt 40.2 2.2E+02 0.0047 23.7 9.4 94 92-193 125-228 (256)
305 KOG1618 Predicted phosphatase 40.0 1E+02 0.0022 26.7 5.9 89 89-190 49-144 (389)
306 COG5426 Uncharacterized membra 39.7 90 0.002 24.8 5.2 80 89-173 27-118 (254)
307 COG2022 ThiG Uncharacterized e 39.6 2.2E+02 0.0047 23.5 9.1 94 91-193 111-212 (262)
308 cd06536 CIDE_N_ICAD CIDE_N dom 39.6 29 0.00063 23.2 2.2 19 10-28 43-61 (80)
309 COG2241 CobL Precorrin-6B meth 39.5 2.1E+02 0.0044 23.2 7.8 76 107-193 68-148 (210)
310 cd05008 SIS_GlmS_GlmD_1 SIS (S 39.4 40 0.00086 24.2 3.3 33 90-122 56-88 (126)
311 PF06014 DUF910: Bacterial pro 39.1 24 0.00053 22.2 1.7 24 155-182 8-31 (62)
312 cd05014 SIS_Kpsf KpsF-like pro 37.4 38 0.00083 24.4 2.9 33 90-122 57-89 (128)
313 PF02593 dTMP_synthase: Thymid 37.2 66 0.0014 26.1 4.3 95 90-190 58-159 (217)
314 PF14213 DUF4325: Domain of un 37.1 76 0.0016 20.6 4.0 30 10-39 18-47 (74)
315 cd06538 CIDE_N_FSP27 CIDE_N do 36.4 35 0.00076 22.7 2.2 19 10-28 40-58 (79)
316 PF14336 DUF4392: Domain of un 36.3 1.4E+02 0.0031 25.5 6.5 28 93-120 62-89 (291)
317 PLN02334 ribulose-phosphate 3- 35.6 2.4E+02 0.0052 22.9 10.6 96 93-193 101-203 (229)
318 PRK00286 xseA exodeoxyribonucl 34.4 3.6E+02 0.0077 24.5 9.5 106 108-216 136-256 (438)
319 PF08484 Methyltransf_14: C-me 34.2 1.8E+02 0.004 22.3 6.3 45 95-142 56-101 (160)
320 TIGR03140 AhpF alkyl hydropero 34.1 3.9E+02 0.0084 24.8 9.6 102 89-192 128-242 (515)
321 COG5190 FCP1 TFIIF-interacting 33.6 1.1E+02 0.0024 27.3 5.5 84 90-178 251-334 (390)
322 PF04007 DUF354: Protein of un 33.5 1.4E+02 0.003 26.1 6.1 92 96-194 16-112 (335)
323 PRK09348 glyQ glycyl-tRNA synt 33.4 41 0.00089 27.9 2.6 42 152-193 93-137 (283)
324 cd00733 GlyRS_alpha_core Class 33.2 42 0.00091 27.8 2.6 43 151-193 88-133 (279)
325 cd05710 SIS_1 A subgroup of th 33.0 57 0.0012 23.4 3.2 33 90-122 57-89 (120)
326 TIGR03365 Bsubt_queE 7-cyano-7 32.9 47 0.001 27.4 3.0 29 92-120 85-113 (238)
327 TIGR01858 tag_bisphos_ald clas 32.8 3.1E+02 0.0067 23.3 8.9 96 96-195 4-105 (282)
328 TIGR00237 xseA exodeoxyribonuc 31.5 3.3E+02 0.0072 24.7 8.4 71 108-180 130-205 (432)
329 PRK13125 trpA tryptophan synth 31.4 3E+02 0.0064 22.7 10.4 95 94-193 116-215 (244)
330 cd01445 TST_Repeats Thiosulfat 31.1 1.9E+02 0.0041 21.4 5.8 46 146-191 75-128 (138)
331 PRK13717 conjugal transfer pro 31.1 2.2E+02 0.0047 21.0 6.1 13 8-20 44-56 (128)
332 COG0019 LysA Diaminopimelate d 30.9 2.5E+02 0.0054 25.2 7.4 35 159-193 90-126 (394)
333 TIGR00388 glyQ glycyl-tRNA syn 30.9 49 0.0011 27.6 2.7 41 152-192 90-133 (293)
334 COG0052 RpsB Ribosomal protein 30.9 3.1E+02 0.0068 22.8 10.0 49 167-218 158-209 (252)
335 PRK08304 stage V sporulation p 30.7 1.5E+02 0.0032 26.0 5.6 67 127-193 30-109 (337)
336 COG0279 GmhA Phosphoheptose is 30.5 2.6E+02 0.0057 21.8 12.2 99 95-193 29-144 (176)
337 PF01380 SIS: SIS domain SIS d 30.2 68 0.0015 22.9 3.3 33 90-122 63-95 (131)
338 TIGR00715 precor6x_red precorr 29.1 2.5E+02 0.0055 23.4 6.7 39 175-218 213-251 (256)
339 TIGR02826 RNR_activ_nrdG3 anae 29.0 94 0.002 23.4 3.9 27 93-119 74-100 (147)
340 TIGR03127 RuMP_HxlB 6-phospho 28.3 71 0.0015 24.7 3.2 33 90-122 82-114 (179)
341 TIGR02495 NrdG2 anaerobic ribo 28.1 1.4E+02 0.003 23.3 4.9 30 90-119 73-102 (191)
342 PRK14021 bifunctional shikimat 27.7 5.2E+02 0.011 24.3 10.1 95 94-193 195-303 (542)
343 PRK10812 putative DNAse; Provi 27.7 2.9E+02 0.0063 23.1 6.9 33 93-125 19-51 (265)
344 PF00220 Hormone_4: Neurohypop 27.4 28 0.00062 12.9 0.4 7 264-270 3-9 (9)
345 PF12897 Aminotran_MocR: Alani 27.3 2.9E+02 0.0063 24.8 6.9 81 96-176 13-97 (425)
346 PRK11449 putative deoxyribonuc 27.1 3.7E+02 0.008 22.4 8.3 20 259-278 189-208 (258)
347 PF05402 PqqD: Coenzyme PQQ sy 27.1 70 0.0015 20.1 2.5 16 93-108 51-66 (68)
348 KOG0208 Cation transport ATPas 26.7 1.9E+02 0.0041 29.3 6.1 91 91-186 647-744 (1140)
349 PF02017 CIDE-N: CIDE-N domain 26.2 46 0.001 22.1 1.5 18 10-27 41-58 (78)
350 TIGR03568 NeuC_NnaA UDP-N-acet 26.0 3.7E+02 0.008 23.6 7.7 32 163-194 92-126 (365)
351 PF03808 Glyco_tran_WecB: Glyc 25.9 3.1E+02 0.0067 21.1 7.1 75 95-176 36-112 (172)
352 PF05673 DUF815: Protein of un 25.6 4E+02 0.0086 22.2 7.1 50 96-147 69-118 (249)
353 PLN02591 tryptophan synthase 25.4 4E+02 0.0086 22.2 9.2 97 93-193 117-219 (250)
354 KOG0207 Cation transport ATPas 25.4 1.5E+02 0.0033 29.5 5.3 46 146-193 723-769 (951)
355 COG0381 WecB UDP-N-acetylgluco 25.2 2.9E+02 0.0063 24.7 6.6 90 98-194 21-125 (383)
356 PRK10076 pyruvate formate lyas 25.1 1.6E+02 0.0034 23.9 4.7 29 90-118 49-78 (213)
357 PF06189 5-nucleotidase: 5'-nu 24.8 4.2E+02 0.0091 22.3 8.4 71 107-193 36-110 (264)
358 COG0196 RibF FAD synthase [Coe 24.2 37 0.00081 29.1 1.0 48 231-279 180-229 (304)
359 COG0826 Collagenase and relate 24.1 5E+02 0.011 22.9 9.3 92 93-194 48-146 (347)
360 KOG0622 Ornithine decarboxylas 23.9 3.7E+02 0.008 24.3 6.9 39 155-193 113-153 (448)
361 COG2099 CobK Precorrin-6x redu 23.3 4.5E+02 0.0097 22.0 7.9 26 93-118 114-139 (257)
362 COG1834 N-Dimethylarginine dim 23.2 2.3E+02 0.0049 23.9 5.3 86 97-183 41-146 (267)
363 cd05006 SIS_GmhA Phosphoheptos 23.1 91 0.002 24.1 3.0 31 90-120 111-141 (177)
364 cd05013 SIS_RpiR RpiR-like pro 23.0 92 0.002 22.3 2.9 30 92-121 72-101 (139)
365 PRK03692 putative UDP-N-acetyl 23.0 4.4E+02 0.0095 21.8 7.2 71 96-175 94-167 (243)
366 cd05017 SIS_PGI_PMI_1 The memb 22.8 1E+02 0.0022 22.0 3.0 28 90-117 53-80 (119)
367 cd05005 SIS_PHI Hexulose-6-pho 22.7 98 0.0021 23.9 3.1 33 90-122 85-117 (179)
368 cd04795 SIS SIS domain. SIS (S 22.4 1.3E+02 0.0029 19.5 3.3 25 90-114 57-81 (87)
369 PF06901 FrpC: RTX iron-regula 22.4 49 0.0011 26.1 1.2 14 10-23 59-72 (271)
370 COG0761 lytB 4-Hydroxy-3-methy 22.2 2.4E+02 0.0052 24.1 5.2 42 152-197 228-269 (294)
371 TIGR03859 PQQ_PqqD coenzyme PQ 22.1 1.7E+02 0.0037 19.4 3.7 35 71-108 45-79 (81)
372 PF03020 LEM: LEM domain; Int 22.0 14 0.0003 21.5 -1.4 28 98-125 10-37 (43)
373 PF02350 Epimerase_2: UDP-N-ac 22.0 4.9E+02 0.011 22.8 7.6 39 168-207 260-299 (346)
374 PRK08005 epimerase; Validated 21.9 4.3E+02 0.0093 21.3 11.7 94 93-193 92-192 (210)
375 PRK13937 phosphoheptose isomer 21.8 1E+02 0.0023 24.2 3.1 33 90-122 116-148 (188)
376 cd01516 FBPase_glpX Bacterial 21.8 3.9E+02 0.0085 23.0 6.4 85 93-186 163-247 (309)
377 PF02254 TrkA_N: TrkA-N domain 21.6 2.9E+02 0.0062 19.2 7.1 24 167-190 91-114 (116)
378 cd06533 Glyco_transf_WecG_TagA 21.5 3.8E+02 0.0082 20.6 6.1 23 96-118 35-57 (171)
379 PF05116 S6PP: Sucrose-6F-phos 21.5 1.5E+02 0.0032 24.5 4.1 41 99-141 27-67 (247)
380 cd02071 MM_CoA_mut_B12_BD meth 21.3 3.2E+02 0.0069 19.6 9.4 23 168-190 83-107 (122)
381 TIGR03128 RuMP_HxlA 3-hexulose 21.1 4.2E+02 0.009 20.9 8.6 90 96-193 91-187 (206)
382 TIGR00167 cbbA ketose-bisphosp 21.1 5.3E+02 0.011 22.0 9.5 99 95-195 5-110 (288)
383 PF10113 Fibrillarin_2: Fibril 21.0 1.2E+02 0.0026 27.3 3.4 43 152-194 209-255 (505)
384 PLN02423 phosphomannomutase 21.0 1.5E+02 0.0033 24.4 4.0 32 93-125 26-57 (245)
385 TIGR00441 gmhA phosphoheptose 20.9 99 0.0022 23.3 2.7 32 90-121 89-120 (154)
386 PRK10422 lipopolysaccharide co 20.8 5.6E+02 0.012 22.2 9.8 86 94-194 202-290 (352)
387 COG0541 Ffh Signal recognition 20.7 3.5E+02 0.0076 24.7 6.2 100 91-193 138-248 (451)
388 PF09949 DUF2183: Uncharacteri 20.4 3.1E+02 0.0067 19.1 5.9 23 160-182 58-82 (100)
389 PF03603 DNA_III_psi: DNA poly 20.2 1.7E+02 0.0038 21.5 3.7 65 102-172 8-72 (128)
390 PF13911 AhpC-TSA_2: AhpC/TSA 20.0 2.6E+02 0.0057 19.5 4.7 33 98-131 4-36 (115)
No 1
>PLN02940 riboflavin kinase
Probab=100.00 E-value=7e-40 Score=286.53 Aligned_cols=252 Identities=75% Similarity=1.238 Sum_probs=228.1
Q ss_pred CccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Q 023109 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHL 87 (287)
Q Consensus 8 ~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (287)
.+++|+||+||||+|+...+..+++.+++++|..++........|.+..+.+..++..++.+...+++...+.+.+.+..
T Consensus 10 ~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (382)
T PLN02940 10 LVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKIVGKTPLEAAATVVEDYGLPCSTDEFNSEITPLLSEQW 89 (382)
T ss_pred cCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999988887778888988888888888888776666777777777776666
Q ss_pred ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCc
Q 023109 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (287)
Q Consensus 88 ~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~ 167 (287)
....++||+.++|+.|+++|++++|+||++...++..+.++.|+.++|+.+++++++...||+|+.|..+++.++++|++
T Consensus 90 ~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~ 169 (382)
T PLN02940 90 CNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSN 169 (382)
T ss_pred ccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhH
Confidence 67889999999999999999999999999999988888337899999999999999999999999999999999999999
Q ss_pred EEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccCcCccccCCCCccccccCCCCCCCceeeccceeee
Q 023109 168 SLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKGL 247 (287)
Q Consensus 168 ~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~ 247 (287)
|++|||+..|+.+|+++|+.++++.++.........++++++++.++...-.++|++++|+.+++|..|+...|.|.+|.
T Consensus 170 ~l~VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i~sl~el~~~~~~~~~~~~~~~~~~~~~~y~~~G~Vv~G~ 249 (382)
T PLN02940 170 CLVIEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVINSLLDLQPEKWGLPPFNDWIEGTLPIEPWHIGGPVIKGF 249 (382)
T ss_pred EEEEeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEeCCHhHcCHHHcCCCCccccccCcCCcCCEEEEEEEEeCC
Confidence 99999999999999999999999988654343456789999999999887788999999999999999999999999999
Q ss_pred ccCccccchhHh
Q 023109 248 GRGSKLICLQRV 259 (287)
Q Consensus 248 ~~~~~~l~~~~~ 259 (287)
+++++.||.|||
T Consensus 250 ~~G~~~lg~PTa 261 (382)
T PLN02940 250 GRGSKVLGIPTA 261 (382)
T ss_pred ccCcccCCCCcc
Confidence 999998999999
No 2
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=100.00 E-value=3.4e-31 Score=216.97 Aligned_cols=211 Identities=21% Similarity=0.369 Sum_probs=173.3
Q ss_pred ccCCccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCH-HHHHHHhCCCHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Q 023109 5 LKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDG-REKHKIVGKTPLEEAAIIVEDYGL-PCAKHEFVNEVYSM 82 (287)
Q Consensus 5 ~~~~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 82 (287)
+..++++|+||+||||+|+...+..+++++++++|..... .......|.........+...... ......+...+.+.
T Consensus 3 ~~~~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (222)
T PRK10826 3 TPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDTLGLRIDQVVDLWYARQPWNGPSRQEVVQRIIAR 82 (222)
T ss_pred CcccCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCHHHHHHHhhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 3446899999999999999999999999999999987665 455667777666655555444432 12334444445444
Q ss_pred HHhh-hccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHc
Q 023109 83 FSDH-LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL 161 (287)
Q Consensus 83 ~~~~-~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l 161 (287)
+.+. ....+++||+.++|+.++++|++++++||+....++..+ +.+++..+|+.++++++.+..||+|+.+..+++++
T Consensus 83 ~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~ 161 (222)
T PRK10826 83 VISLIEETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVL-TMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKL 161 (222)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH-HhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHc
Confidence 4433 236789999999999999999999999999999999999 88999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccc-cccCCcEEeCCccCcCc
Q 023109 162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-RYTAADEVINSLLDLRP 216 (287)
Q Consensus 162 ~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~-~~~~a~~v~~~l~el~~ 216 (287)
|+.|++|++|||+.+|+++|+++|+++++++.+....+ ....++.++.++.++..
T Consensus 162 ~~~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl~~ 217 (222)
T PRK10826 162 GVDPLTCVALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTELTA 217 (222)
T ss_pred CCCHHHeEEEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheeccCHHHHhh
Confidence 99999999999999999999999999999988654432 34568999999998754
No 3
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.98 E-value=7e-31 Score=218.14 Aligned_cols=206 Identities=26% Similarity=0.345 Sum_probs=164.8
Q ss_pred cCCccEEEEecCCcccccHHHHHHHHHHHHHHcCC----CCCHHHH-HHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 023109 6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGK----EWDGREK-HKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY 80 (287)
Q Consensus 6 ~~~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (287)
+.++++|+||+||||+|+...+..+++++++++|. +...+.+ +...|.+..+.+..++.. ... ...++...+.
T Consensus 19 ~~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~-~~~~~~~~~~ 96 (248)
T PLN02770 19 LAPLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGVPITEEFFVENIAGKHNEDIALGLFPD-DLE-RGLKFTDDKE 96 (248)
T ss_pred cCccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHcCCCCHHHHHHHHcCc-chh-hHHHHHHHHH
Confidence 34689999999999999999999999999999864 3444433 355677666555444321 110 1112223333
Q ss_pred HHHHhhh-ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHH
Q 023109 81 SMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK 159 (287)
Q Consensus 81 ~~~~~~~-~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~ 159 (287)
..+.... ...+++||+.++|+.|+++|++++|+||++...++..+ +++|+.++|+.+++++++...||+|+.|.++++
T Consensus 97 ~~y~~~~~~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l-~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~ 175 (248)
T PLN02770 97 ALFRKLASEQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMI-SLLGLSDFFQAVIIGSECEHAKPHPDPYLKALE 175 (248)
T ss_pred HHHHHHHHhcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHH-HHcCChhhCcEEEecCcCCCCCCChHHHHHHHH
Confidence 3444333 35789999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCcccc-ccCCcEEeCCccCc
Q 023109 160 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEVINSLLDL 214 (287)
Q Consensus 160 ~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~-~~~a~~v~~~l~el 214 (287)
+++++|++|+||||+..|+.+|+++|+.++++..+...... ...++++++++.++
T Consensus 176 ~~~~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~~~e~ 231 (248)
T PLN02770 176 VLKVSKDHTFVFEDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKDYEDP 231 (248)
T ss_pred HhCCChhHEEEEcCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEeccchhh
Confidence 99999999999999999999999999999999876533333 45789999999984
No 4
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.98 E-value=7.8e-31 Score=214.02 Aligned_cols=210 Identities=25% Similarity=0.405 Sum_probs=178.0
Q ss_pred CCccEEEEecCCcccccHHHHHHHHHHHHHHcCCC-CCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 023109 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85 (287)
Q Consensus 7 ~~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (287)
+++++|+||+||||+|+...+..+++.++++++.. ..........|......+............. +..+.+.+.+..
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 80 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELIERLLGEADEEAAA-ELVERLREEFLT 80 (220)
T ss_pred CCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCHHHHHHHHhccccchhHH-HHHHHHHHHHHH
Confidence 56899999999999999999999999999999998 7888888899998888777655443322111 344444444444
Q ss_pred hhcc---CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcC
Q 023109 86 HLCK---VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (287)
Q Consensus 86 ~~~~---~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~ 162 (287)
.+.. ..++||+.++|..++++|++++++||.+...++..+ +++|+..+|+.+++.++....||+|..+..+++.++
T Consensus 81 ~~~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l-~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~ 159 (220)
T COG0546 81 AYAELLESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILL-KALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLG 159 (220)
T ss_pred HHHhhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH-HHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhC
Confidence 4432 579999999999999999999999999999999999 889999999999998889999999999999999999
Q ss_pred CCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCC-cccc-ccCCcEEeCCccCcCccc
Q 023109 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK-QTHR-YTAADEVINSLLDLRPEK 218 (287)
Q Consensus 163 ~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~-~~~~-~~~a~~v~~~l~el~~~~ 218 (287)
++|++++||||+.+|+.+|++||+.++.+.+++. .... ...+++++.++.++...+
T Consensus 160 ~~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~el~~~l 217 (220)
T COG0546 160 LDPEEALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAELLALL 217 (220)
T ss_pred CChhheEEECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEECCHHHHHHHH
Confidence 9988999999999999999999999999999864 2333 567899999999986543
No 5
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.98 E-value=6.4e-31 Score=218.65 Aligned_cols=208 Identities=23% Similarity=0.293 Sum_probs=166.0
Q ss_pred CccEEEEecCCcccccH-HHHHHHHHHHHHHcCCCCCHHHH-HHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 023109 8 LMSCVILDLDGTLLNTD-GMFSEVLKTFLVKYGKEWDGREK-HKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85 (287)
Q Consensus 8 ~~k~iifDlDGTL~d~~-~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (287)
.+|+|+||+||||+||. ..+..+++.+++++|........ +...|.+....+..++...........+...+...+..
T Consensus 23 ~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~~~G~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 102 (260)
T PLN03243 23 GWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKRAEGMKNEQAISEVLCWSRDFLQMKRLAIRKEDLYEY 102 (260)
T ss_pred CceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 57999999999999995 56778999999999998765544 56788888777666543211000112333333333322
Q ss_pred hh-ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCC
Q 023109 86 HL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (287)
Q Consensus 86 ~~-~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~ 164 (287)
.. ...+++||+.++|+.|+++|++++|+||++...++..+ +++|+..+|+.+++++++...||+|+.|..+++++|++
T Consensus 103 ~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l-~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~ 181 (260)
T PLN03243 103 MQGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAI-EAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFI 181 (260)
T ss_pred HHccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHH-HHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCC
Confidence 22 25678999999999999999999999999999999999 88999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccCcCcc
Q 023109 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE 217 (287)
Q Consensus 165 ~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~~ 217 (287)
|++|+||||+..|+.+|+++|+.++++.. .........+++++.++.++...
T Consensus 182 p~~~l~IgDs~~Di~aA~~aG~~~i~v~g-~~~~~~l~~ad~vi~~~~el~~~ 233 (260)
T PLN03243 182 PERCIVFGNSNSSVEAAHDGCMKCVAVAG-KHPVYELSAGDLVVRRLDDLSVV 233 (260)
T ss_pred hHHeEEEcCCHHHHHHHHHcCCEEEEEec-CCchhhhccCCEEeCCHHHHHHH
Confidence 99999999999999999999999999974 33233334689999999988544
No 6
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.98 E-value=5.9e-31 Score=216.20 Aligned_cols=209 Identities=22% Similarity=0.350 Sum_probs=167.9
Q ss_pred CCccEEEEecCCcccccHHHHHHHHHHHHHHcCCC-CCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 023109 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85 (287)
Q Consensus 7 ~~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (287)
.++|+|+||+||||+|+...+..+++.+++++|.+ .+.+..+...|.+....+........ ....+++...+.+.+..
T Consensus 10 ~~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 88 (229)
T PRK13226 10 RFPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAMLAVAFPELD-AAARDALIPEFLQRYEA 88 (229)
T ss_pred ccCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999999999999986 55666666666655544433322211 11123444555555544
Q ss_pred hh-ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCC
Q 023109 86 HL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (287)
Q Consensus 86 ~~-~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~ 164 (287)
.. ...+++||+.++|+.|+++|++++++||++...+...+ +++|+..+|+.++++++....||+|+.|.++++.+|++
T Consensus 89 ~~~~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~ 167 (229)
T PRK13226 89 LIGTQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLIL-PQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVA 167 (229)
T ss_pred hhhhcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCC
Confidence 33 35788999999999999999999999999998888888 88999999999999988888999999999999999999
Q ss_pred CCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCcc--cc-ccCCcEEeCCccCcCcc
Q 023109 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQT--HR-YTAADEVINSLLDLRPE 217 (287)
Q Consensus 165 ~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~--~~-~~~a~~v~~~l~el~~~ 217 (287)
|++|+||||+.+|+.+|+++|+.++++..+.... .. ...++++++++.++...
T Consensus 168 p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el~~~ 223 (229)
T PRK13226 168 PTDCVYVGDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQPQLLWNP 223 (229)
T ss_pred hhhEEEeCCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeeeCCHHHHHHH
Confidence 9999999999999999999999999998765322 12 35689999999988543
No 7
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.98 E-value=1.6e-30 Score=211.78 Aligned_cols=204 Identities=23% Similarity=0.305 Sum_probs=168.7
Q ss_pred EEEecCCcccccHHHHHHHHHHHHHHcCCC-CCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHhhh
Q 023109 12 VILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKH---EFVNEVYSMFSDHL 87 (287)
Q Consensus 12 iifDlDGTL~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 87 (287)
|+||+||||+|+...+..+++.+++++|.. .+........+.+....+..++..++.+.+.+ .+.+.+.+.+....
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMALAALGLPPATLARVIGFIGNGVPVLMERVLAWAGQEPDAQRVAELRKLFDRHYEEVA 80 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhcccHHHHHHHHhhccccccChHHHHHHHHHHHHHHHHhc
Confidence 689999999999988889999999999986 56666677778877777777666655443322 33333444444333
Q ss_pred c-cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCC
Q 023109 88 C-KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (287)
Q Consensus 88 ~-~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~ 166 (287)
. ..+++||+.++|+.++++|++++++|+++...++..+ +++|+..+|+.++++++....||+|+.|.++++.++++|+
T Consensus 81 ~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~ 159 (213)
T TIGR01449 81 GELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLL-ELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQ 159 (213)
T ss_pred cccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChh
Confidence 2 4689999999999999999999999999999999999 8899999999999999999999999999999999999999
Q ss_pred cEEEEeCCHhhHHHHHHcCCeEEEECCCCCccc-c-ccCCcEEeCCccCcCc
Q 023109 167 SSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-R-YTAADEVINSLLDLRP 216 (287)
Q Consensus 167 ~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~-~-~~~a~~v~~~l~el~~ 216 (287)
+|++|||+.+|+.+|+++|+.++++..+..... . ...++++++++.++..
T Consensus 160 ~~~~igDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l~~ 211 (213)
T TIGR01449 160 QMVYVGDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYDSLNELPP 211 (213)
T ss_pred HeEEeCCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEeCCHHHHHh
Confidence 999999999999999999999999987654322 2 3568999999988753
No 8
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.98 E-value=9.1e-31 Score=214.21 Aligned_cols=207 Identities=24% Similarity=0.366 Sum_probs=171.1
Q ss_pred ccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHH-HhCCCHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhh
Q 023109 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHK-IVGKTPLEEAAIIVEDYGLPC-AKHEFVNEVYSMFSDH 86 (287)
Q Consensus 9 ~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 86 (287)
+|+|+||+||||+|+...+..+++++++++|.+.+...... +.|.+..+.+..++...+.+. ..+.+...+.+.+...
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSAWMGQSKIEAIRALLALDGADEAEAQAAFADFEERLAEA 80 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCHHHHHHhhcCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999877666655 778888887777776655431 1233344444444443
Q ss_pred hc--cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCc--cccceeeccCCcCCCCCCHHHHHHHHHHcC
Q 023109 87 LC--KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN--ESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (287)
Q Consensus 87 ~~--~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~--~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~ 162 (287)
+. ..+++||+.++|+.++++|++++++||+....++..+ +++|+. .+|+.++++++....||+|+.|.+++++++
T Consensus 81 ~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l-~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~ 159 (220)
T TIGR03351 81 YDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLL-EKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTG 159 (220)
T ss_pred hcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-HHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcC
Confidence 32 4689999999999999999999999999999999999 888998 999999999998889999999999999999
Q ss_pred CC-CCcEEEEeCCHhhHHHHHHcCCeE-EEECCCCCccc-c-ccCCcEEeCCccCcCc
Q 023109 163 ME-PSSSLVIEDSVIGVVAGKAAGMEV-VAVPSLPKQTH-R-YTAADEVINSLLDLRP 216 (287)
Q Consensus 163 ~~-~~~~l~iGDs~~Dv~~a~~aG~~~-i~v~~~~~~~~-~-~~~a~~v~~~l~el~~ 216 (287)
+. |++|+||||+..|+.+|+++|+.+ +++..+..... . ...+++++.++.++..
T Consensus 160 ~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~l~~ 217 (220)
T TIGR03351 160 VQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLDSVADLPA 217 (220)
T ss_pred CCChhHeEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceeecCHHHHHH
Confidence 97 799999999999999999999999 88877543332 2 3567889998887643
No 9
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.98 E-value=1e-30 Score=212.98 Aligned_cols=204 Identities=23% Similarity=0.348 Sum_probs=167.4
Q ss_pred CccEEEEecCCcccccHHHHHHHHHHHHHHcCCC-CCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Q 023109 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH 86 (287)
Q Consensus 8 ~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (287)
++++|+||+||||+|+...+..++++++++++.. .+.+......|.+..+.+..+ . +...+.+...+...+...
T Consensus 2 ~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~ 76 (214)
T PRK13288 2 KINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIGPSLHDTFSKI----D-ESKVEEMITTYREFNHEH 76 (214)
T ss_pred CccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHhc----C-HHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999998764 566667777887766555432 1 112333333333333322
Q ss_pred h-ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCC
Q 023109 87 L-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (287)
Q Consensus 87 ~-~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~ 165 (287)
. ...+++||+.++|+.|+++|++++++||+....+..++ +.+|+..+|+.++++++....||+|+.+.+++++++++|
T Consensus 77 ~~~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l-~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~ 155 (214)
T PRK13288 77 HDELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGL-KLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKP 155 (214)
T ss_pred hhhhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCH
Confidence 2 35678999999999999999999999999999999999 889999999999999999999999999999999999999
Q ss_pred CcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccc-c-ccCCcEEeCCccCcCcc
Q 023109 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-R-YTAADEVINSLLDLRPE 217 (287)
Q Consensus 166 ~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~-~-~~~a~~v~~~l~el~~~ 217 (287)
++++||||+.+|+.+|+++|+.++++..+..... . ...++++++++.++.+.
T Consensus 156 ~~~~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l~~~ 209 (214)
T PRK13288 156 EEALMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSDLLAI 209 (214)
T ss_pred HHEEEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHHHHHH
Confidence 9999999999999999999999999988643332 2 45689999999987654
No 10
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.97 E-value=2.7e-30 Score=222.10 Aligned_cols=207 Identities=25% Similarity=0.290 Sum_probs=170.8
Q ss_pred CccEEEEecCCcccccHH-HHHHHHHHHHHHcCCCCCHH-HHHHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 023109 8 LMSCVILDLDGTLLNTDG-MFSEVLKTFLVKYGKEWDGR-EKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85 (287)
Q Consensus 8 ~~k~iifDlDGTL~d~~~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (287)
..++|+||+||||+|+.. .+..++.++++++|...... ......|.+..+.+..++.....+...+++.+.+.+.+.+
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~~~G~~~~~~l~~ll~~~~~~~~~e~l~~~~~~~y~~ 209 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEGMKNEQAISEVLCWSRDPAELRRMATRKEEIYQA 209 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 578999999999999976 56679999999999886655 4467889888887776654322111233444444554544
Q ss_pred hhc-cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCC
Q 023109 86 HLC-KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (287)
Q Consensus 86 ~~~-~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~ 164 (287)
... ...++||+.++|+.|+++|++++|+||++...++..+ +++|+..+|+.+++++++...||+|+.|..+++.+|+.
T Consensus 210 ~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L-~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~ 288 (381)
T PLN02575 210 LQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAI-GSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFI 288 (381)
T ss_pred HhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCC
Confidence 433 4688999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccCcCc
Q 023109 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 216 (287)
Q Consensus 165 ~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~ 216 (287)
|++|+||||+..|+++|+++|+.++++..+.... ....++++++++.++..
T Consensus 289 Peecl~IGDS~~DIeAAk~AGm~~IgV~~~~~~~-~l~~Ad~iI~s~~EL~~ 339 (381)
T PLN02575 289 PERCIVFGNSNQTVEAAHDARMKCVAVASKHPIY-ELGAADLVVRRLDELSI 339 (381)
T ss_pred cccEEEEcCCHHHHHHHHHcCCEEEEECCCCChh-HhcCCCEEECCHHHHHH
Confidence 9999999999999999999999999998754332 23458999999999843
No 11
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=212.04 Aligned_cols=188 Identities=34% Similarity=0.517 Sum_probs=163.5
Q ss_pred CccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHh
Q 023109 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC--AKHEFVNEVYSMFSD 85 (287)
Q Consensus 8 ~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 85 (287)
++++++||+||||+||...+..+|.++++++|...+.+......+.........+........ ...............
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEAL 80 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999999888877888877777777766665432 233333333333444
Q ss_pred hhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCC
Q 023109 86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (287)
Q Consensus 86 ~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~ 165 (287)
.....++.||+.++|+.|+++|++++++|++++..++..+ ...|+.++|+.+++++++..+||+|+.|..+++++|+.|
T Consensus 81 ~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L-~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P 159 (221)
T COG0637 81 ELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVL-ARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDP 159 (221)
T ss_pred hhcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHH-HHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCCh
Confidence 4567899999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCHhhHHHHHHcCCeEEEECCCCC
Q 023109 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK 196 (287)
Q Consensus 166 ~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~ 196 (287)
++|++|+||++++.++++|||.+++++.+..
T Consensus 160 ~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~~~ 190 (221)
T COG0637 160 EECVVVEDSPAGIQAAKAAGMRVVGVPAGHD 190 (221)
T ss_pred HHeEEEecchhHHHHHHHCCCEEEEecCCCC
Confidence 9999999999999999999999999998443
No 12
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.97 E-value=2.1e-30 Score=216.37 Aligned_cols=207 Identities=18% Similarity=0.255 Sum_probs=163.9
Q ss_pred ccEEEEecCCcccccHH-HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHH----------HHHHhCCCCCHHH---
Q 023109 9 MSCVILDLDGTLLNTDG-MFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAI----------IVEDYGLPCAKHE--- 74 (287)
Q Consensus 9 ~k~iifDlDGTL~d~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~--- 74 (287)
+++|+||+||||+|+.. .+..+++++++++|...+.+......|.+....+.. +...++.+...+.
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQITLEEARGPMGLGKWDHIRALLKMPAVAERWRAKFGRLPTEADIEA 81 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCccHHHHHHhcCccHHHHHHHHhcCHHHHHHHHHHhCCCCCHHHHHH
Confidence 68999999999999854 346788999999998877777766777665443332 3344444322322
Q ss_pred HHHHHHHHHHhhh-ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcccc-ceeeccCCcCCCCCCHH
Q 023109 75 FVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTGKPSPD 152 (287)
Q Consensus 75 ~~~~~~~~~~~~~-~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~f-d~i~~~~~~~~~kp~~~ 152 (287)
+...+.+.+.+.. ...+++||+.++|+.|+++|++++|+||++...++.++ +++|+..+| +.+++++++...||+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l-~~~gl~~~f~d~ii~~~~~~~~KP~p~ 160 (253)
T TIGR01422 82 IYEAFEPLQLAKLAEYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVA-PEAALQGYRPDYNVTTDDVPAGRPAPW 160 (253)
T ss_pred HHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHH-HHHHhcCCCCceEEccccCCCCCCCHH
Confidence 3333333332222 35789999999999999999999999999999999999 888999886 99999999999999999
Q ss_pred HHHHHHHHcCCC-CCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCc------------------------ccc-ccCCcE
Q 023109 153 IFLEAAKRLNME-PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ------------------------THR-YTAADE 206 (287)
Q Consensus 153 ~~~~~~~~l~~~-~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~------------------------~~~-~~~a~~ 206 (287)
.|.++++++++. |++|+|||||++|+.+|+++|+.++++..+... ... ...+++
T Consensus 161 ~~~~a~~~l~~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (253)
T TIGR01422 161 MALKNAIELGVYDVAACVKVGDTVPDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARRAEATARLKAAGAHY 240 (253)
T ss_pred HHHHHHHHcCCCCchheEEECCcHHHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHHHHHHHhcCCCE
Confidence 999999999995 999999999999999999999999999887541 122 457899
Q ss_pred EeCCccCcCc
Q 023109 207 VINSLLDLRP 216 (287)
Q Consensus 207 v~~~l~el~~ 216 (287)
+++++.++..
T Consensus 241 v~~~~~el~~ 250 (253)
T TIGR01422 241 VIDTLAELPA 250 (253)
T ss_pred ehhcHHHHHH
Confidence 9999998754
No 13
>PRK11587 putative phosphatase; Provisional
Probab=99.97 E-value=6.1e-30 Score=208.86 Aligned_cols=200 Identities=27% Similarity=0.404 Sum_probs=157.8
Q ss_pred CccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHH--HHh
Q 023109 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSM--FSD 85 (287)
Q Consensus 8 ~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 85 (287)
++++|+||+||||+|+...+..+++++++++|.+. .+......|.+....++.+.... ..+.+...+... +..
T Consensus 2 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~-~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 76 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAP-DEVLNFIHGKQAITSLRHFMAGA----SEAEIQAEFTRLEQIEA 76 (218)
T ss_pred CCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCH-HHHHHHHcCCCHHHHHHHHhccC----CcHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999864 23333445776666555543321 233333333321 111
Q ss_pred -hhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCC
Q 023109 86 -HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (287)
Q Consensus 86 -~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~ 164 (287)
......++||+.++|+.|+++|++++++||++...+...+ +..++ ..|+.++++++....||+|+.|..+++.+|+.
T Consensus 77 ~~~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l-~~~~l-~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~ 154 (218)
T PRK11587 77 TDTEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARH-KAAGL-PAPEVFVTAERVKRGKPEPDAYLLGAQLLGLA 154 (218)
T ss_pred hhhcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHH-HhcCC-CCccEEEEHHHhcCCCCCcHHHHHHHHHcCCC
Confidence 1246788999999999999999999999999888777777 77787 45788888888888999999999999999999
Q ss_pred CCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccCcC
Q 023109 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLR 215 (287)
Q Consensus 165 ~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~el~ 215 (287)
|++|+|||||..|+.+|+++|+.++++..+... .....++++++++.++.
T Consensus 155 p~~~l~igDs~~di~aA~~aG~~~i~v~~~~~~-~~~~~~~~~~~~~~el~ 204 (218)
T PRK11587 155 PQECVVVEDAPAGVLSGLAAGCHVIAVNAPADT-PRLDEVDLVLHSLEQLT 204 (218)
T ss_pred cccEEEEecchhhhHHHHHCCCEEEEECCCCch-hhhccCCEEecchhhee
Confidence 999999999999999999999999999875432 23456899999999874
No 14
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.97 E-value=1.5e-29 Score=202.09 Aligned_cols=185 Identities=28% Similarity=0.454 Sum_probs=158.4
Q ss_pred ccCCccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 023109 5 LKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS 84 (287)
Q Consensus 5 ~~~~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (287)
||.++++|+||+||||+|+...+..+++++++++|.+.+........|.+..+.+..+....+.....+++.......+.
T Consensus 1 ~~~~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (188)
T PRK10725 1 MYDRYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDEQAMVALNGSPTWRIAQAIIELNQADLDPHALAREKTEAVK 80 (188)
T ss_pred CCCcceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 56678999999999999999999999999999999887777777788888877777777766655455555554444443
Q ss_pred hhh-ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCC
Q 023109 85 DHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (287)
Q Consensus 85 ~~~-~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~ 163 (287)
... ...++.|+ .++|..+++. ++++++||++...++.++ +++|+..+|+.++++++....||+|+.|..+++++++
T Consensus 81 ~~~~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l-~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~ 157 (188)
T PRK10725 81 SMLLDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALL-AHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGV 157 (188)
T ss_pred HHHhccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHH-HhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCC
Confidence 332 45667785 6899999876 899999999999999999 8899999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCHhhHHHHHHcCCeEEEEC
Q 023109 164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVP 192 (287)
Q Consensus 164 ~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~ 192 (287)
+|++|+||||+..|+++|+++|++++.+.
T Consensus 158 ~~~~~l~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 158 QPTQCVVFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred CHHHeEEEeccHhhHHHHHHCCCEEEeec
Confidence 99999999999999999999999999875
No 15
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.97 E-value=6.2e-30 Score=215.03 Aligned_cols=212 Identities=19% Similarity=0.253 Sum_probs=164.6
Q ss_pred cCCccEEEEecCCcccccHHH-HHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHH----------HHHhCCCCCHH-
Q 023109 6 KKLMSCVILDLDGTLLNTDGM-FSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAII----------VEDYGLPCAKH- 73 (287)
Q Consensus 6 ~~~~k~iifDlDGTL~d~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~- 73 (287)
|+++|+|+||+||||+|+... ...+++++++++|.+.+.+......|.+....+..+ ...++.+...+
T Consensus 1 ~~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 80 (267)
T PRK13478 1 MMKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEITLEEARGPMGLGKWDHIRALLKMPRVAARWQAVFGRLPTEAD 80 (267)
T ss_pred CCceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHhcHHHHHHHHHHhCCCCCHHH
Confidence 345899999999999998543 367889999999988777666667776654433322 23344432222
Q ss_pred --HHHHHHHHHHHhhh-ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcccc-ceeeccCCcCCCCC
Q 023109 74 --EFVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTGKP 149 (287)
Q Consensus 74 --~~~~~~~~~~~~~~-~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~f-d~i~~~~~~~~~kp 149 (287)
++...+.+.+.+.. ....++||+.++|+.|+++|++++|+||++...+...+ +.+++..+| +.++++++....||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l-~~~~l~~~~~d~i~~~~~~~~~KP 159 (267)
T PRK13478 81 VDALYAAFEPLQIAKLADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVV-PLAAAQGYRPDHVVTTDDVPAGRP 159 (267)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH-HHHhhcCCCceEEEcCCcCCCCCC
Confidence 23333333333322 35788999999999999999999999999999998888 777877764 89999999989999
Q ss_pred CHHHHHHHHHHcCCC-CCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCc------------------------ccc-ccC
Q 023109 150 SPDIFLEAAKRLNME-PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ------------------------THR-YTA 203 (287)
Q Consensus 150 ~~~~~~~~~~~l~~~-~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~------------------------~~~-~~~ 203 (287)
+|+.|.++++++|+. |++|+||||+++|+.+|+++|+.++++..++.. ... ...
T Consensus 160 ~p~~~~~a~~~l~~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (267)
T PRK13478 160 YPWMALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRAAG 239 (267)
T ss_pred ChHHHHHHHHHcCCCCCcceEEEcCcHHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999996 699999999999999999999999999887542 122 457
Q ss_pred CcEEeCCccCcCccc
Q 023109 204 ADEVINSLLDLRPEK 218 (287)
Q Consensus 204 a~~v~~~l~el~~~~ 218 (287)
++++++++.++...+
T Consensus 240 a~~vi~~~~~l~~~l 254 (267)
T PRK13478 240 AHYVIDTIADLPAVI 254 (267)
T ss_pred CCeehhhHHHHHHHH
Confidence 899999999886543
No 16
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.97 E-value=7.5e-30 Score=208.93 Aligned_cols=206 Identities=23% Similarity=0.369 Sum_probs=167.2
Q ss_pred CCccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHH-HHHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 023109 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGRE-KHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85 (287)
Q Consensus 7 ~~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (287)
+++++|+||+||||+|+...+..++.++++++|...+.+. .....+.+....+..+...++.+...+.+...+.+.+..
T Consensus 2 ~~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (221)
T PRK10563 2 SQIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFKGVKLYEIIDIISKEHGVTLAKAELEPVYRAEVAR 81 (221)
T ss_pred CCCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 3589999999999999999888999999999998876543 455677778888888888887765566666555544433
Q ss_pred hh-ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccc-eeeccCCcCCCCCCHHHHHHHHHHcCC
Q 023109 86 HL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-VIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (287)
Q Consensus 86 ~~-~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd-~i~~~~~~~~~kp~~~~~~~~~~~l~~ 163 (287)
.. ...+++||+.++|+.| +++++++||++...++..+ +++|+..+|+ .++++++.+..||+|+.|..+++.+++
T Consensus 82 ~~~~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l-~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~ 157 (221)
T PRK10563 82 LFDSELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSL-GKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNV 157 (221)
T ss_pred HHHccCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHH-HhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCC
Confidence 32 4678899999999998 3899999999999999999 8899999996 677777888999999999999999999
Q ss_pred CCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccCcCc
Q 023109 164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 216 (287)
Q Consensus 164 ~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~ 216 (287)
+|++|++|||++.|+.+|+++|+.++++..+.........++.++.++.++.+
T Consensus 158 ~p~~~l~igDs~~di~aA~~aG~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 210 (221)
T PRK10563 158 NVENCILVDDSSAGAQSGIAAGMEVFYFCADPHNKPIDHPLVTTFTDLAQLPE 210 (221)
T ss_pred CHHHeEEEeCcHhhHHHHHHCCCEEEEECCCCCCcchhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999887543322223344556677776654
No 17
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.97 E-value=1.7e-29 Score=206.87 Aligned_cols=205 Identities=21% Similarity=0.313 Sum_probs=150.7
Q ss_pred ccEEEEecCCcccccHHHHHHHHHHH---HHHcCCCCCHHHHHHHhC-------CCHHHHHHHHHHHhCCCCCHHHHHHH
Q 023109 9 MSCVILDLDGTLLNTDGMFSEVLKTF---LVKYGKEWDGREKHKIVG-------KTPLEEAAIIVEDYGLPCAKHEFVNE 78 (287)
Q Consensus 9 ~k~iifDlDGTL~d~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (287)
+++|+||+||||+|+...+..+++.+ +.++|.+.+.+......+ ....................+.....
T Consensus 2 ~~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTSGLAEKARRNAIEVLIEAGLNVDFEEAYEELLKLIKEYGSNYPTHFDYLIRRLWEEYNPKLVAAF 81 (221)
T ss_pred ceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHhccccCcchHHHHHHHhhhcCHHHHHHH
Confidence 78999999999999987776666544 456666665544322111 11000111111222211122222222
Q ss_pred HHHHHHhhhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHH
Q 023109 79 VYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA 158 (287)
Q Consensus 79 ~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~ 158 (287)
...........++++||+.++|+.|+++|++++++||++...+...+ +++|+..+|+.++++++.+..||+|+.|..++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~ 160 (221)
T TIGR02253 82 VYAYHKLKFAYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKL-ERLGVRDFFDAVITSEEEGVEKPHPKIFYAAL 160 (221)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-HhCChHHhccEEEEeccCCCCCCCHHHHHHHH
Confidence 22322323345789999999999999999999999999998888899 88999999999999999999999999999999
Q ss_pred HHcCCCCCcEEEEeCCH-hhHHHHHHcCCeEEEECCCCCcc---ccccCCcEEeCCccCc
Q 023109 159 KRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT---HRYTAADEVINSLLDL 214 (287)
Q Consensus 159 ~~l~~~~~~~l~iGDs~-~Dv~~a~~aG~~~i~v~~~~~~~---~~~~~a~~v~~~l~el 214 (287)
+++|++|++++||||++ +|+.+|+++|+.++++..+.... .....+++++.++.++
T Consensus 161 ~~~~~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~el 220 (221)
T TIGR02253 161 KRLGVKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLREL 220 (221)
T ss_pred HHcCCChhhEEEECCChHHHHHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHhh
Confidence 99999999999999998 89999999999999998865432 2234578888888765
No 18
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=1e-28 Score=202.94 Aligned_cols=213 Identities=22% Similarity=0.296 Sum_probs=171.7
Q ss_pred ccCCccEEEEecCCcccccHHHHHHHHHHHHHHcCCC-CCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHH---HHHHHH
Q 023109 5 LKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHE---FVNEVY 80 (287)
Q Consensus 5 ~~~~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 80 (287)
+.+++++|+||+||||+|+...+..++..++++++.+ .+........+......+...+...+.....+. +...+.
T Consensus 2 ~~~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T PRK13222 2 KFMDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERVRTWVGNGADVLVERALTWAGREPDEELLEKLRELFD 81 (226)
T ss_pred CCCcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHHHhhccCCccHHHHHHHHHHHH
Confidence 3455899999999999999888888999999999986 455566677777776666665544333323222 333344
Q ss_pred HHHHhhhc-cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHH
Q 023109 81 SMFSDHLC-KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK 159 (287)
Q Consensus 81 ~~~~~~~~-~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~ 159 (287)
+.+..... ...+.||+.++++.++++|++++++|++....++..+ +++|+..+|+.++++++....||+|+.+..+++
T Consensus 82 ~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~ 160 (226)
T PRK13222 82 RHYAENVAGGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLL-EALGIADYFSVVIGGDSLPNKKPDPAPLLLACE 160 (226)
T ss_pred HHHHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCccCccEEEcCCCCCCCCcChHHHHHHHH
Confidence 44443332 5789999999999999999999999999999998888 888999999999999988899999999999999
Q ss_pred HcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCcc-c-cccCCcEEeCCccCcCccc
Q 023109 160 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQT-H-RYTAADEVINSLLDLRPEK 218 (287)
Q Consensus 160 ~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~-~-~~~~a~~v~~~l~el~~~~ 218 (287)
.+++++++|++|||+.+|+.+|+++|+.++++..+.... . ....+++++.++.++...+
T Consensus 161 ~~~~~~~~~i~igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l~~~l 221 (226)
T PRK13222 161 KLGLDPEEMLFVGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVIDHFAELLPLL 221 (226)
T ss_pred HcCCChhheEEECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEECCHHHHHHHH
Confidence 999999999999999999999999999999998865422 2 2456889999999886543
No 19
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=7.9e-29 Score=208.19 Aligned_cols=210 Identities=25% Similarity=0.311 Sum_probs=167.9
Q ss_pred CCccEEEEecCCcccccHHHHHHHHHHHHHHcCCCC-CHHHHHHHhCCCHHHHHHHHHHH----hCCC-CCHHHHHHHHH
Q 023109 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEW-DGREKHKIVGKTPLEEAAIIVED----YGLP-CAKHEFVNEVY 80 (287)
Q Consensus 7 ~~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~ 80 (287)
.++++|+||+||||+|+...+..+++.+++++|... ..+......+.+........+.. .+.+ ...+.+...+.
T Consensus 11 ~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (272)
T PRK13223 11 RLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDDELAEQALALFM 90 (272)
T ss_pred ccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhChhHHHHHHHHhcccccccCCCHHHHHHHHHHHH
Confidence 568999999999999999999999999999999875 34455567777666555544321 1111 01222333333
Q ss_pred HHHHhhhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHH
Q 023109 81 SMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR 160 (287)
Q Consensus 81 ~~~~~~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~ 160 (287)
+.+.......+++||+.++|+.++++|++++++||++...++..+ +++++..+|+.++++++....||+|+.+..+++.
T Consensus 91 ~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l-~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~ 169 (272)
T PRK13223 91 EAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLL-DQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKM 169 (272)
T ss_pred HHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHH-HHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHH
Confidence 333332334678999999999999999999999999999888888 8889999999999999888899999999999999
Q ss_pred cCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCcccc--ccCCcEEeCCccCcCcc
Q 023109 161 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPE 217 (287)
Q Consensus 161 l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~--~~~a~~v~~~l~el~~~ 217 (287)
+|+.|++|++|||+.+|+++|+++|+.++++..+...... ...++++++++.++...
T Consensus 170 ~g~~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~~l~el~~~ 228 (272)
T PRK13223 170 AGVPPSQSLFVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVIDDLRALLPG 228 (272)
T ss_pred hCCChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEECCHHHHHHH
Confidence 9999999999999999999999999999999886543332 35789999999998643
No 20
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.96 E-value=1e-28 Score=206.75 Aligned_cols=203 Identities=19% Similarity=0.292 Sum_probs=163.4
Q ss_pred CccEEEEecCCcccccHHHHHHHHHHHHHHcCCC-CCHHHHHHHhCCCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh
Q 023109 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSD 85 (287)
Q Consensus 8 ~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (287)
.+++++||+||||+|+...+..+++++++++|.. .+.+.+....+....... ..++.+ ...+++...+.+.+..
T Consensus 61 ~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~ 136 (273)
T PRK13225 61 TLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRTIV----RRAGLSPWQQARLLQRVQRQLGD 136 (273)
T ss_pred hcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHH----HHcCCCHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999986 555556566666554433 333432 1223444455555544
Q ss_pred hhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCC
Q 023109 86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (287)
Q Consensus 86 ~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~ 165 (287)
.....+++||+.++|+.|+++|++++|+||+....++..+ +++|+.++|+.++++++. +++++.+.+++++++++|
T Consensus 137 ~~~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L-~~~gl~~~F~~vi~~~~~---~~k~~~~~~~l~~~~~~p 212 (273)
T PRK13225 137 CLPALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFL-QRQGLRSLFSVVQAGTPI---LSKRRALSQLVAREGWQP 212 (273)
T ss_pred hcccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCChhheEEEEecCCC---CCCHHHHHHHHHHhCcCh
Confidence 4456788999999999999999999999999999999999 899999999998877654 345789999999999999
Q ss_pred CcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccc-c-ccCCcEEeCCccCcCccc
Q 023109 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-R-YTAADEVINSLLDLRPEK 218 (287)
Q Consensus 166 ~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~-~-~~~a~~v~~~l~el~~~~ 218 (287)
++|+||||+.+|+.+|+++|+.++++..+..... . ...++++++++.++...+
T Consensus 213 ~~~l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL~~~~ 267 (273)
T PRK13225 213 AAVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSDLLQAV 267 (273)
T ss_pred hHEEEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHHHHHHH
Confidence 9999999999999999999999999988754432 2 457899999999987654
No 21
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.96 E-value=1.6e-28 Score=198.66 Aligned_cols=197 Identities=24% Similarity=0.318 Sum_probs=158.4
Q ss_pred EEEecCCcccccHHHHHHHHHHHHHHc-CCC-CCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcc
Q 023109 12 VILDLDGTLLNTDGMFSEVLKTFLVKY-GKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCK 89 (287)
Q Consensus 12 iifDlDGTL~d~~~~~~~~~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (287)
|+||+||||+|+...+..++++++++. +.. .+.+.+....+......++ ..+.+. ... ..+..........
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~--~~~-~~~~~~~~~~~~~ 73 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDGPAPFEEYRRHLGRYFPDIMR----IMGLPL--EME-EPFVRESYRLAGE 73 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhCccHHHHHH----HcCCCH--HHH-HHHHHHHHHhhcc
Confidence 689999999999999999999999874 653 4566666677766554433 333321 111 1111111222346
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEE
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l 169 (287)
.+++||+.++|+.|+++|++++++||++...++..+ +++|+..+|+.++++++....||+|+.+.++++.++++|++|+
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l 152 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLL-EALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAV 152 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHH-HHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheE
Confidence 889999999999999999999999999999999889 8999999999999999888899999999999999999999999
Q ss_pred EEeCCHhhHHHHHHcCCeEEEECCCCCcccc--ccCCcEEeCCccCcCc
Q 023109 170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRP 216 (287)
Q Consensus 170 ~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~--~~~a~~v~~~l~el~~ 216 (287)
||||+.+|+.+|+++|++++++..+...... ...++++++++.++..
T Consensus 153 ~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l~~ 201 (205)
T TIGR01454 153 MVGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSLLA 201 (205)
T ss_pred EEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHHHH
Confidence 9999999999999999999999887544322 4578999999988754
No 22
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.96 E-value=2.9e-28 Score=194.10 Aligned_cols=179 Identities=30% Similarity=0.449 Sum_probs=150.7
Q ss_pred EEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHH---HHHHHHHHHHhhh
Q 023109 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHE---FVNEVYSMFSDHL 87 (287)
Q Consensus 11 ~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 87 (287)
+|+||+||||+|+...+..+++++++.+|.+.+........+.+..+.+..++...+.+.+.+. +...+.+.+.+..
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFDEEFNESLKGVSREDSLERILDLGGKKYSEEEKEELAERKNDYYVELL 80 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999998877777778888888888888887776544333 2333333333322
Q ss_pred ---ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCC
Q 023109 88 ---CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (287)
Q Consensus 88 ---~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~ 164 (287)
....++||+.++|+.|+++|++++++|++.. ....+ +++|+..+|+.++++++.+..||+|+.|.+++++++++
T Consensus 81 ~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l-~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~ 157 (185)
T TIGR01990 81 KELTPADVLPGIKNLLDDLKKNNIKIALASASKN--APTVL-EKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVS 157 (185)
T ss_pred HhcCCcccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHH-HhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCC
Confidence 2347899999999999999999999998753 35567 88999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCHhhHHHHHHcCCeEEEEC
Q 023109 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVP 192 (287)
Q Consensus 165 ~~~~l~iGDs~~Dv~~a~~aG~~~i~v~ 192 (287)
|++|+||||+.+|+.+|+++|++++++.
T Consensus 158 ~~~~v~vgD~~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 158 PSECIGIEDAQAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred HHHeEEEecCHHHHHHHHHcCCEEEecC
Confidence 9999999999999999999999999873
No 23
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.96 E-value=6e-28 Score=192.24 Aligned_cols=180 Identities=30% Similarity=0.497 Sum_probs=151.0
Q ss_pred ccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHH---HHHHHHHHHHh
Q 023109 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHE---FVNEVYSMFSD 85 (287)
Q Consensus 9 ~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 85 (287)
+++|+||+||||+|+...+..+++.+++++|..++........|.+....+..++..++.....+. +.....+.+.+
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFDKQYNTSLGGLSREDILRAILKLRKPGLSLETIHQLAERKNELYRE 80 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCCHHHHHHcCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999988775555667778888888888777643333333 33333344444
Q ss_pred hh--ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCC
Q 023109 86 HL--CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (287)
Q Consensus 86 ~~--~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~ 163 (287)
.. ...+++||+.++|+.++++|++++++|++ ..++..+ +++|+..+|+.++++++.+..||+|+.|.++++.+++
T Consensus 81 ~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l-~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~ 157 (185)
T TIGR02009 81 LLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRIL-AKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGV 157 (185)
T ss_pred HHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHH-HHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCC
Confidence 33 24789999999999999999999999998 5577788 8899999999999999998999999999999999999
Q ss_pred CCCcEEEEeCCHhhHHHHHHcCCeEEEE
Q 023109 164 EPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (287)
Q Consensus 164 ~~~~~l~iGDs~~Dv~~a~~aG~~~i~v 191 (287)
+|+++++|||+..|+.+|+++|+.++.+
T Consensus 158 ~~~~~v~IgD~~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 158 SPNECVVFEDALAGVQAARAAGMFAVAV 185 (185)
T ss_pred CHHHeEEEeCcHhhHHHHHHCCCeEeeC
Confidence 9999999999999999999999998864
No 24
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.96 E-value=9.1e-28 Score=197.00 Aligned_cols=202 Identities=19% Similarity=0.245 Sum_probs=154.6
Q ss_pred ccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCC-------------HH----HHHHHHHHHhCCCCC
Q 023109 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKT-------------PL----EEAAIIVEDYGLPCA 71 (287)
Q Consensus 9 ~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------~~----~~~~~~~~~~~~~~~ 71 (287)
+|+|+||+||||+|+......+++++++++|..........+.+.. .. ..+..++...+.+..
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGIPLTEDMFAQYKEINQGLWRAYEEGKITKDEVVNTRFSALLKEYNTEAD 80 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHhCCCccHHHHHHHHHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCc
Confidence 5899999999999999988888999999888775443322111110 01 112223333433221
Q ss_pred HHHHHHHHHHHHHhhh-ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCC
Q 023109 72 KHEFVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPS 150 (287)
Q Consensus 72 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~ 150 (287)
.+.+. +.+.... ...+++||+.++|+.++++ ++++++||++...++..+ +.+++..+||.++++++.+..||+
T Consensus 81 ~~~~~----~~~~~~~~~~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l-~~~~l~~~fd~i~~~~~~~~~KP~ 154 (224)
T TIGR02254 81 EALLN----QKYLRFLEEGHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRL-RKSGLFPFFDDIFVSEDAGIQKPD 154 (224)
T ss_pred HHHHH----HHHHHHHhccCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHH-HHCCcHhhcCEEEEcCccCCCCCC
Confidence 11222 2222222 2467899999999999999 999999999999999888 889999999999999999999999
Q ss_pred HHHHHHHHHHc-CCCCCcEEEEeCCH-hhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccCcCc
Q 023109 151 PDIFLEAAKRL-NMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 216 (287)
Q Consensus 151 ~~~~~~~~~~l-~~~~~~~l~iGDs~-~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~ 216 (287)
|++|.++++++ ++.|++|+||||+. +|+.+|+++|+.+++++.+.........+++++.++.++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~el~~ 222 (224)
T TIGR02254 155 KEIFNYALERMPKFSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEIRSLEELYE 222 (224)
T ss_pred HHHHHHHHHHhcCCCchheEEECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEECCHHHHHh
Confidence 99999999999 99999999999998 79999999999999998754443334567889999888754
No 25
>PRK09449 dUMP phosphatase; Provisional
Probab=99.96 E-value=7.2e-28 Score=197.61 Aligned_cols=200 Identities=22% Similarity=0.335 Sum_probs=147.6
Q ss_pred CccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHH--hCCC-----------HHHH----HHHHHHHhCCCC
Q 023109 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKI--VGKT-----------PLEE----AAIIVEDYGLPC 70 (287)
Q Consensus 8 ~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~-----------~~~~----~~~~~~~~~~~~ 70 (287)
++|+|+||+||||+|.+. ..+++++++.+|...+.+....+ .+.+ ..+. +..+...++.
T Consensus 2 ~~k~iiFDlDGTLid~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 77 (224)
T PRK09449 2 KYDWILFDADETLFHFDA--FAGLQRMFSRYGVDFTAEDFQDYQAVNKPLWVDYQNGAITALQLQHTRFESWAEKLNV-- 77 (224)
T ss_pred CccEEEEcCCCchhcchh--hHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC--
Confidence 589999999999998643 46778888888887655444332 1111 1100 1112222221
Q ss_pred CHHHHHHHHHHHHHhhh-ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCC
Q 023109 71 AKHEFVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKP 149 (287)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp 149 (287)
....+. +.+...+ ...+++||+.++|+.|+ +|++++++||++...++..+ +++|+..+||.++++++.+..||
T Consensus 78 ~~~~~~----~~~~~~~~~~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~v~~~~~~~~~KP 151 (224)
T PRK09449 78 TPGELN----SAFLNAMAEICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRL-ERTGLRDYFDLLVISEQVGVAKP 151 (224)
T ss_pred CHHHHH----HHHHHHHhhcCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHH-HhCChHHHcCEEEEECccCCCCC
Confidence 122222 2222222 24678999999999999 57999999999999999889 88999999999999999999999
Q ss_pred CHHHHHHHHHHcCCCC-CcEEEEeCCH-hhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccCcCcc
Q 023109 150 SPDIFLEAAKRLNMEP-SSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE 217 (287)
Q Consensus 150 ~~~~~~~~~~~l~~~~-~~~l~iGDs~-~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~~ 217 (287)
+|++|.++++++|+.+ ++|+||||+. +|+.+|+++|+.+++++.+.........++++++++.++...
T Consensus 152 ~p~~~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i~~~~el~~~ 221 (224)
T PRK09449 152 DVAIFDYALEQMGNPDRSRVLMVGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQVSSLSELEQL 221 (224)
T ss_pred CHHHHHHHHHHcCCCCcccEEEEcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEECCHHHHHHH
Confidence 9999999999999854 7999999998 699999999999999986432222233578999999887643
No 26
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.96 E-value=3.4e-27 Score=188.45 Aligned_cols=214 Identities=37% Similarity=0.580 Sum_probs=190.4
Q ss_pred CccccCCccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 023109 2 AQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYS 81 (287)
Q Consensus 2 ~~~~~~~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (287)
+..+...+.+++||+||||+|++..+..+++..+.++|..+++.......|+...++.+.++..++.+.+.+++..+..+
T Consensus 3 ~~~~~~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~ 82 (222)
T KOG2914|consen 3 SKSLSLKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEE 82 (222)
T ss_pred ccccccceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 34445567899999999999999999999999999999999999889999999999999999888889999999999999
Q ss_pred HHHhhhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeec--cCCcCCCCCCHHHHHHHHH
Q 023109 82 MFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG--SDEVRTGKPSPDIFLEAAK 159 (287)
Q Consensus 82 ~~~~~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~--~~~~~~~kp~~~~~~~~~~ 159 (287)
...+.+....+.||+.+++++|+..|++++++|++++..++.++..+.++...|+.++. ..++..+||+|++|..+++
T Consensus 83 ~~~~~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~ 162 (222)
T KOG2914|consen 83 ILDRLFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAK 162 (222)
T ss_pred HHHHhccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHH
Confidence 99988889999999999999999999999999999999999999555457777888777 5578889999999999999
Q ss_pred HcCCCC-CcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccCcC
Q 023109 160 RLNMEP-SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLR 215 (287)
Q Consensus 160 ~l~~~~-~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~el~ 215 (287)
++|.+| +.|++|+|++..+.++++||+.++++++..........++.+++++.++.
T Consensus 163 ~l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~~~~~~~~~~~~~~~~~~~~~~ 219 (222)
T KOG2914|consen 163 RLGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATPDLSNLFSAGATLILESLEDFK 219 (222)
T ss_pred hcCCCCccceEEECCCHHHHHHHHhcCCeEEEecCCCcchhhhhccceecccccccC
Confidence 999999 99999999999999999999999999994444444677788888777654
No 27
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.96 E-value=9.5e-28 Score=216.06 Aligned_cols=207 Identities=15% Similarity=0.204 Sum_probs=164.9
Q ss_pred CCccEEEEecCCcccccHHHHHHHHHHHHHHcC------CCCCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 023109 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYG------KEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY 80 (287)
Q Consensus 7 ~~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (287)
+|+++|+||+||||+|+...+..++++++++++ ...+.+.+....|.+..+.+..+....+.+ ..++....+.
T Consensus 239 ~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~~~~~-~~~~~~~~~~ 317 (459)
T PRK06698 239 EMLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIDKYREIMGVPLPKVWEALLPDHSLE-IREQTDAYFL 317 (459)
T ss_pred HhhhheeEccCCceecchhHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHcCCChHHHHHHHhhhcchh-HHHHHHHHHH
Confidence 357999999999999999999999999998874 223456667788888888777776554322 1222333333
Q ss_pred HHHHhhh--ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHH
Q 023109 81 SMFSDHL--CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA 158 (287)
Q Consensus 81 ~~~~~~~--~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~ 158 (287)
+.+.... ...+++||+.++|+.|+++|++++|+||++...++..+ +++|+..+|+.++++++.. .||+|+.+..++
T Consensus 318 ~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l-~~~~l~~~f~~i~~~d~v~-~~~kP~~~~~al 395 (459)
T PRK06698 318 ERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIV-SYYDLDQWVTETFSIEQIN-SLNKSDLVKSIL 395 (459)
T ss_pred HHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHH-HHCCcHhhcceeEecCCCC-CCCCcHHHHHHH
Confidence 3333322 25688999999999999999999999999999999999 8999999999999998774 467888999999
Q ss_pred HHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccCcCccc
Q 023109 159 KRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218 (287)
Q Consensus 159 ~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~~~ 218 (287)
+.++ |++|++|||+++|+.+|+++|+.++++..+.........++++++++.++...+
T Consensus 396 ~~l~--~~~~v~VGDs~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i~~l~el~~~l 453 (459)
T PRK06698 396 NKYD--IKEAAVVGDRLSDINAAKDNGLIAIGCNFDFAQEDELAQADIVIDDLLELKGIL 453 (459)
T ss_pred HhcC--cceEEEEeCCHHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEeCCHHHHHHHH
Confidence 8864 789999999999999999999999999886544444456899999998886543
No 28
>PLN02811 hydrolase
Probab=99.96 E-value=3.8e-27 Score=192.59 Aligned_cols=201 Identities=40% Similarity=0.669 Sum_probs=163.9
Q ss_pred cCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHhhhccCCCC
Q 023109 16 LDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC--AKHEFVNEVYSMFSDHLCKVKAL 93 (287)
Q Consensus 16 lDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 93 (287)
+||||+|+...+..+++.+++++|...+.+......|.+....+..+....+.+. ..+.+.......+.......+++
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGKTFDWSLKAKMMGKKAIEAARIFVEESGLSDSLSPEDFLVEREAMLQDLFPTSDLM 80 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCCCCCHHHHHHccCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhhCCCC
Confidence 6999999999999999999999999877776777888888877777777766542 33444444444444434467889
Q ss_pred CcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccC--CcCCCCCCHHHHHHHHHHcC---CCCCcE
Q 023109 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD--EVRTGKPSPDIFLEAAKRLN---MEPSSS 168 (287)
Q Consensus 94 ~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~--~~~~~kp~~~~~~~~~~~l~---~~~~~~ 168 (287)
||+.++|+.|+++|++++++||+........+.++.++.++|+.+++++ +++..||+|+.|..++++++ +.|++|
T Consensus 81 ~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~ 160 (220)
T PLN02811 81 PGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVDPGKV 160 (220)
T ss_pred ccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCCccce
Confidence 9999999999999999999999987766555535557888999999999 88889999999999999997 999999
Q ss_pred EEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccCcCc
Q 023109 169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 216 (287)
Q Consensus 169 l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~ 216 (287)
+||||+..|+.+|+++|++++++..+.........+++++.++.++..
T Consensus 161 v~IgDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~d~vi~~~~e~~~ 208 (220)
T PLN02811 161 LVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYCKGADQVLSSLLDFKP 208 (220)
T ss_pred EEEeccHhhHHHHHHCCCeEEEEeCCCCcHhhhhchhhHhcCHhhCCH
Confidence 999999999999999999999998755433334577889999988643
No 29
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.95 E-value=1e-26 Score=196.59 Aligned_cols=208 Identities=26% Similarity=0.433 Sum_probs=153.7
Q ss_pred CCccEEEEecCCcccccH-HHHHHHHHHHHHHcCC-C--CCHHHHHHH--hCCCHHHHHHHHHHHhCCC--------CCH
Q 023109 7 KLMSCVILDLDGTLLNTD-GMFSEVLKTFLVKYGK-E--WDGREKHKI--VGKTPLEEAAIIVEDYGLP--------CAK 72 (287)
Q Consensus 7 ~~~k~iifDlDGTL~d~~-~~~~~~~~~~~~~~g~-~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~~ 72 (287)
..+++|+||+||||+|+. ..+..+++++++++|. . ++...+... .+.+.......+ ...+.+ .+.
T Consensus 38 ~~~k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 116 (286)
T PLN02779 38 ALPEALLFDCDGVLVETERDGHRVAFNDAFKEFGLRPVEWDVELYDELLNIGGGKERMTWYF-NENGWPTSTIEKAPKDE 116 (286)
T ss_pred cCCcEEEEeCceeEEccccHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHccCCChHHHHHHH-HHcCCCccccccCCccc
Confidence 357999999999999999 9999999999999998 3 233332222 444443333222 222211 011
Q ss_pred ---HH----HHHHHHHHHHhhhc--cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcC---Cccccceeec
Q 023109 73 ---HE----FVNEVYSMFSDHLC--KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHG---WNESFSVIVG 140 (287)
Q Consensus 73 ---~~----~~~~~~~~~~~~~~--~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~g---l~~~fd~i~~ 140 (287)
++ +.......+.+... .++++||+.++|+.++++|++++|+||++...+...+ ++.+ +...|+.+ +
T Consensus 117 e~~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l-~~~~~~~~~~~~~~v-~ 194 (286)
T PLN02779 117 EERKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIV-NTLLGPERAQGLDVF-A 194 (286)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHhccccccCceEEE-e
Confidence 11 22222233433332 3589999999999999999999999999999888888 5543 23334544 7
Q ss_pred cCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccCcCcc
Q 023109 141 SDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE 217 (287)
Q Consensus 141 ~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~~ 217 (287)
++++...||+|+.|.++++.+|++|++|+||||+.+|+.+|+++|+.++++..+.........++++++++.++...
T Consensus 195 ~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi~~~~~l~~~ 271 (286)
T PLN02779 195 GDDVPKKKPDPDIYNLAAETLGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVFDCLGDVPLE 271 (286)
T ss_pred ccccCCCCCCHHHHHHHHHHhCcChHHEEEEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEECChhhcchh
Confidence 77788899999999999999999999999999999999999999999999988655444345789999999998654
No 30
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.95 E-value=5e-27 Score=188.94 Aligned_cols=180 Identities=18% Similarity=0.317 Sum_probs=135.4
Q ss_pred ccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCH-------HH--HHHHhCC--CH----HHHHHHHHHHhCCCCCHH
Q 023109 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDG-------RE--KHKIVGK--TP----LEEAAIIVEDYGLPCAKH 73 (287)
Q Consensus 9 ~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~-------~~--~~~~~~~--~~----~~~~~~~~~~~~~~~~~~ 73 (287)
+|+|+||+||||+|+... ...+.+.+...+..... .. .....+. +. ...+..++..++.+....
T Consensus 1 ik~viFD~dgTLiD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 79 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHSV-VERFAELYGGRGEALSQLWRQKQLEYSWLRTLMGPYADFWDLTREALRYLLGRLGLEDDES 79 (198)
T ss_pred CcEEEEeCCCcCccHHHH-HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHccCCCcCHHHHHHHHHHHHHHHcCCCCCHH
Confidence 578999999999999864 33444433322211110 00 0011121 11 233455666666553322
Q ss_pred HHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHH
Q 023109 74 EFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI 153 (287)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~ 153 (287)
. . +.+.+.+...+++||+.++|++|+++|++++++||++...++..+ +++|+..+|+.++++++++..||+|+.
T Consensus 80 ~-~----~~~~~~~~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l-~~~gl~~~fd~i~~s~~~~~~KP~~~~ 153 (198)
T TIGR01428 80 A-A----DRLAEAYLRLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLV-KHAGLDDPFDAVLSADAVRAYKPAPQV 153 (198)
T ss_pred H-H----HHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHCCChhhhheeEehhhcCCCCCCHHH
Confidence 1 2 223333456788999999999999999999999999999999999 889999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCC
Q 023109 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195 (287)
Q Consensus 154 ~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~ 195 (287)
|..+++.+|++|++|++|||+.+|+.+|+++|+.+++++...
T Consensus 154 ~~~~~~~~~~~p~~~~~vgD~~~Di~~A~~~G~~~i~v~r~~ 195 (198)
T TIGR01428 154 YQLALEALGVPPDEVLFVASNPWDLGGAKKFGFKTAWVNRPG 195 (198)
T ss_pred HHHHHHHhCCChhhEEEEeCCHHHHHHHHHCCCcEEEecCCC
Confidence 999999999999999999999999999999999999998843
No 31
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.95 E-value=3.7e-26 Score=221.74 Aligned_cols=208 Identities=25% Similarity=0.367 Sum_probs=174.3
Q ss_pred CCccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh
Q 023109 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSD 85 (287)
Q Consensus 7 ~~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (287)
.++++|+||+||||+|+...+..+++++++++|.+++.+.+....+.+..+.+..+...++.+ ...++..+.+.+.+.+
T Consensus 73 ~~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~it~e~~~~~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 152 (1057)
T PLN02919 73 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFVPFMGTGEANFLGGVASVKGVKGFDPDAAKKRFFEIYLE 152 (1057)
T ss_pred CCCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999988877777888888777766666555542 2334444444444433
Q ss_pred hhc---cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCc-cccceeeccCCcCCCCCCHHHHHHHHHHc
Q 023109 86 HLC---KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ESFSVIVGSDEVRTGKPSPDIFLEAAKRL 161 (287)
Q Consensus 86 ~~~---~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~-~~fd~i~~~~~~~~~kp~~~~~~~~~~~l 161 (287)
.+. ...++||+.++|++|+++|++++|+||+....++..+ +++|+. .+|+.+++++++...||+|++|.++++++
T Consensus 153 ~~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L-~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~l 231 (1057)
T PLN02919 153 KYAKPNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANL-AAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKIL 231 (1057)
T ss_pred HhhhcccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH-HHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHc
Confidence 321 2347899999999999999999999999999999999 888996 78999999999999999999999999999
Q ss_pred CCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCcccc-ccCCcEEeCCccCcC
Q 023109 162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEVINSLLDLR 215 (287)
Q Consensus 162 ~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~-~~~a~~v~~~l~el~ 215 (287)
++.|++|+||||+..|+++|+++|+.++++..+....+. ...++++++++.++.
T Consensus 232 gv~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi~~l~el~ 286 (1057)
T PLN02919 232 GVPTSECVVIEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIRKDIGNIS 286 (1057)
T ss_pred CcCcccEEEEcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHCC
Confidence 999999999999999999999999999999987544333 457789999999984
No 32
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.95 E-value=6.3e-27 Score=184.31 Aligned_cols=175 Identities=31% Similarity=0.531 Sum_probs=148.3
Q ss_pred EEEecCCcccccHHHHHHHHHH-HHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhccC
Q 023109 12 VILDLDGTLLNTDGMFSEVLKT-FLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKV 90 (287)
Q Consensus 12 iifDlDGTL~d~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (287)
|+||+||||+++...+..++.. +.+.++........+...+.+..+.+..++...+.+ ...+.+.+.+. ......
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~ 76 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLEISAEELRELFGKSYEEALERLLERFGID--PEEIQELFREY--NLESKL 76 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH--HHHHHHHHHHH--HHHGGE
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHhhhccchh--HHHHHHHhhhh--hhhhcc
Confidence 7999999999999888788876 577888776666777777777777787777766532 22233333222 112578
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~ 170 (287)
+++||+.++|+.++++|++++++||++...++..+ +.+|+..+|+.++++++.+..||+++.|+.+++.++++|++|++
T Consensus 77 ~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l-~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~ 155 (176)
T PF13419_consen 77 QPYPGVRELLERLKAKGIPLVIVSNGSRERIERVL-ERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEILF 155 (176)
T ss_dssp EESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHH-HHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEE
T ss_pred chhhhhhhhhhhcccccceeEEeecCCcccccccc-cccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEEE
Confidence 89999999999999999999999999999999999 88999999999999999999999999999999999999999999
Q ss_pred EeCCHhhHHHHHHcCCeEEEE
Q 023109 171 IEDSVIGVVAGKAAGMEVVAV 191 (287)
Q Consensus 171 iGDs~~Dv~~a~~aG~~~i~v 191 (287)
|||+..|+.+|+++|+.++++
T Consensus 156 vgD~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 156 VGDSPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp EESSHHHHHHHHHTTSEEEEE
T ss_pred EeCCHHHHHHHHHcCCeEEeC
Confidence 999999999999999999975
No 33
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.95 E-value=1.5e-26 Score=189.12 Aligned_cols=125 Identities=16% Similarity=0.208 Sum_probs=106.7
Q ss_pred ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCc
Q 023109 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (287)
Q Consensus 88 ~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~ 167 (287)
....++||+.++|+.|+++|++++++||++...++..+ +++|+..+|+.++++++.+..||+|+.|.++++++|++|++
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~ 168 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKL-EHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAER 168 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHH-HHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHH
Confidence 46789999999999999999999999999999999888 88999999999999999999999999999999999999999
Q ss_pred EEEEeCCHhhHHHHHHcCCeE-EEECCCCCccccccCCcEEeCCccCcC
Q 023109 168 SLVIEDSVIGVVAGKAAGMEV-VAVPSLPKQTHRYTAADEVINSLLDLR 215 (287)
Q Consensus 168 ~l~iGDs~~Dv~~a~~aG~~~-i~v~~~~~~~~~~~~a~~v~~~l~el~ 215 (287)
|+||||++.|+.+|+++|+.+ +++..+..... ..+..+.+++.++.
T Consensus 169 ~l~igDs~~di~aA~~aG~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~ 215 (224)
T PRK14988 169 TLFIDDSEPILDAAAQFGIRYCLGVTNPDSGIA--EKQYQRHPSLNDYR 215 (224)
T ss_pred EEEEcCCHHHHHHHHHcCCeEEEEEeCCCCCcc--chhccCCCcHHHHH
Confidence 999999999999999999985 55666433322 23333345554443
No 34
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.95 E-value=2.7e-26 Score=185.40 Aligned_cols=178 Identities=28% Similarity=0.352 Sum_probs=137.1
Q ss_pred cEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHH------------------hCCCHHHH----HHHHHHHhC
Q 023109 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKI------------------VGKTPLEE----AAIIVEDYG 67 (287)
Q Consensus 10 k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------~~~~~~~~----~~~~~~~~~ 67 (287)
|+|+||+||||+|+...+..+++++++++|.+......... .+.+..+. +...+...+
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVEVSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFGRAG 80 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 58999999999999888889999999999998765432111 13343322 233333333
Q ss_pred CCCCHHHHHHHHHHHHHhhh--ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcC
Q 023109 68 LPCAKHEFVNEVYSMFSDHL--CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 145 (287)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~ 145 (287)
.+ ..+.+...+...+.... ....++||+.++|+.|+++|++++++||++.. ....+ +++|+..+|+.++++++.+
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l-~~~~l~~~fd~i~~s~~~~ 157 (203)
T TIGR02252 81 VP-DPESFEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLL-EALGLLEYFDFVVTSYEVG 157 (203)
T ss_pred CC-CchhHHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHH-HHCCcHHhcceEEeecccC
Confidence 21 22333333333322211 24578999999999999999999999998875 46678 8889999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEeCCH-hhHHHHHHcCCeEEE
Q 023109 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVA 190 (287)
Q Consensus 146 ~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~-~Dv~~a~~aG~~~i~ 190 (287)
..||+|+.|.++++.+|++|++|++|||+. +|+.+|+++|+.+++
T Consensus 158 ~~KP~~~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 158 AEKPDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred CCCCCHHHHHHHHHHcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 999999999999999999999999999998 899999999999874
No 35
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.95 E-value=1.6e-26 Score=190.99 Aligned_cols=204 Identities=16% Similarity=0.205 Sum_probs=145.7
Q ss_pred cCCccEEEEecCCcccccHHHHHHHHHHHHHHcCCC------CCHHHHH---HHhCC-------C----HHHHHHHHHHH
Q 023109 6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE------WDGREKH---KIVGK-------T----PLEEAAIIVED 65 (287)
Q Consensus 6 ~~~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~------~~~~~~~---~~~~~-------~----~~~~~~~~~~~ 65 (287)
+.++|+|+||+||||+|+...+..+++++++..+.. +...... ...+. . ....+..++..
T Consensus 7 ~~~~k~iiFDlDGTL~D~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (238)
T PRK10748 7 LGRISALTFDLDDTLYDNRPVILRTEQEALAFVQNYHPALRSFQNEDLQRLRQALREAEPEIYHDVTRWRWRAIEQAMLD 86 (238)
T ss_pred CCCceeEEEcCcccccCChHHHHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHHHHhCchhhCcHHHHHHHHHHHHHHH
Confidence 346799999999999999988888888777654211 1111111 11000 0 11233445566
Q ss_pred hCCCCCHH-HHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCc
Q 023109 66 YGLPCAKH-EFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV 144 (287)
Q Consensus 66 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~ 144 (287)
++.+.... .........+........++||+.++|++|++. ++++++||++.. + ++.|+..+|+.++++++.
T Consensus 87 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~-~~~gl~~~fd~i~~~~~~ 159 (238)
T PRK10748 87 AGLSAEEASAGADAAMINFAKWRSRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----P-ELFGLGDYFEFVLRAGPH 159 (238)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHcC-CCEEEEECCCch-----H-HHCCcHHhhceeEecccC
Confidence 66542211 111222223333234578999999999999875 999999998765 3 668999999999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcEEEEeCCH-hhHHHHHHcCCeEEEECCCCCcc----ccccCCcEEeCCccCcCc
Q 023109 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT----HRYTAADEVINSLLDLRP 216 (287)
Q Consensus 145 ~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~-~Dv~~a~~aG~~~i~v~~~~~~~----~~~~~a~~v~~~l~el~~ 216 (287)
+..||+|+.|.++++++|++|++|+||||++ .|+.+|+++|+.+++++.+.... .....++..+.++.++..
T Consensus 160 ~~~KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~i~~l~el~~ 236 (238)
T PRK10748 160 GRSKPFSDMYHLAAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEISRLASLTS 236 (238)
T ss_pred CcCCCcHHHHHHHHHHcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEEECCHHHHHh
Confidence 9999999999999999999999999999995 99999999999999998743221 112457888888887754
No 36
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.94 E-value=7.7e-25 Score=176.00 Aligned_cols=173 Identities=16% Similarity=0.231 Sum_probs=134.3
Q ss_pred cEEEEecCCcccccHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHH--------HHHHHHHHHhC-----CCCCHHHH
Q 023109 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYG-KEWDGREKHKIVGKTPL--------EEAAIIVEDYG-----LPCAKHEF 75 (287)
Q Consensus 10 k~iifDlDGTL~d~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-----~~~~~~~~ 75 (287)
++|+||+||||+|+...+..+++.+++++| ...+.+.+....+.+.. ..+...+.... .....+.+
T Consensus 1 ~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (197)
T TIGR01548 1 QALVLDMDGVMADVSQSYRRAIIDTVEHFGGVSVTHADIDHTKLAGNANNDWQLTHRLVVDGLNSASSERVRDAPTLEAV 80 (197)
T ss_pred CceEEecCceEEechHHHHHHHHHHHHHHcCCCCCHHHHHHHHHccCccCchHHHHHHHHHhhhcccchhccCCccHHHH
Confidence 368999999999999999999999999997 56666666666664321 11112221110 11234455
Q ss_pred HHHHHHHHHhhh----------ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcC
Q 023109 76 VNEVYSMFSDHL----------CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 145 (287)
Q Consensus 76 ~~~~~~~~~~~~----------~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~ 145 (287)
...+.+.+.... ....+.+++.++|+.|+++|++++++||++...++..+ +.+|+..+|+.++++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~ 159 (197)
T TIGR01548 81 TAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFL-TTHGLEILFPVQIWMEDCP 159 (197)
T ss_pred HHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHH-HHcCchhhCCEEEeecCCC
Confidence 555555544321 12244566799999999999999999999999999999 8999999999999999887
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHc
Q 023109 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA 184 (287)
Q Consensus 146 ~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~a 184 (287)
. ||+|+.+.++++++|++|++|++|||+.+|+.+|+++
T Consensus 160 ~-KP~p~~~~~~~~~~~~~~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 160 P-KPNPEPLILAAKALGVEACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred C-CcCHHHHHHHHHHhCcCcccEEEEeCCHHHHHHHHhC
Confidence 7 9999999999999999999999999999999999875
No 37
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.93 E-value=2.2e-24 Score=171.34 Aligned_cols=175 Identities=30% Similarity=0.436 Sum_probs=125.4
Q ss_pred EEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHHHH------HHHHHH
Q 023109 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNE------VYSMFS 84 (287)
Q Consensus 11 ~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 84 (287)
+++||+||||++++..+..... ................ .......+.+...++.......+... ....+.
T Consensus 1 ~vlFDlDgtLv~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (183)
T TIGR01509 1 AILFDLDGVLVDTSSAIEKLVN---REEFPLVPDELGVSAV-GKLELALRRWKEKYGRTMSAEDFYLLYENADIKQLFYD 76 (183)
T ss_pred CeeeccCCceechHHHHHHHHH---HHhCCCCcHHHHHHHH-HHHHHHhhccccccCCCCCcHHHHHHHhHHHHHHHHHH
Confidence 4899999999999887655211 2222222222221111 11222223333334443333333222 222232
Q ss_pred hhhcc--CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcC
Q 023109 85 DHLCK--VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (287)
Q Consensus 85 ~~~~~--~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~ 162 (287)
..... .+++||+.++|+.++++|++++++||++... .... .++|+..+|+.++++++.+..||+|+.|..+++.++
T Consensus 77 ~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~ 154 (183)
T TIGR01509 77 AILDEEKLKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLV-QELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLG 154 (183)
T ss_pred HHHhccCCccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHH-HhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcC
Confidence 22233 6899999999999999999999999999888 5555 668999999999999999999999999999999999
Q ss_pred CCCCcEEEEeCCHhhHHHHHHcCCeEEEE
Q 023109 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (287)
Q Consensus 163 ~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v 191 (287)
++|++|++|||++.|+.+|+++|+.++++
T Consensus 155 ~~~~~~~~vgD~~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 155 LKPEECLFVDDSPAGIEAAKAAGMHTVLV 183 (183)
T ss_pred CCcceEEEEcCCHHHHHHHHHcCCEEEeC
Confidence 99999999999999999999999999864
No 38
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.93 E-value=1.3e-24 Score=176.60 Aligned_cols=179 Identities=21% Similarity=0.217 Sum_probs=125.1
Q ss_pred ccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-----
Q 023109 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMF----- 83 (287)
Q Consensus 9 ~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 83 (287)
+|+|+||+||||+|+.. ....+.......|.+ .........+.+.....+.+. .+ ..+.+++...+.+.+
T Consensus 2 ik~viFDldGtL~d~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~--~g-~~~~~~~~~~~~~~~~~~~~ 76 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSPG-VMRRWETERGLPGLK-DFIVTVNITGPDFNPWARTFE--RG-ELTAEAFDGLFRHEYGLRLG 76 (211)
T ss_pred ceEEEEecCCceecCHH-HHHHHHHHcCCCCCc-cHHHHHHhcCCCCChHHHHHH--cC-CCCHHHHHHHHHHHhccccC
Confidence 57999999999999966 545555444334443 222222333333222222111 11 112222322222221
Q ss_pred ---------Hhhh-ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHH--HHHHHHhhcCCccccceeeccCCcCCCCCCH
Q 023109 84 ---------SDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRAT--IESKISYQHGWNESFSVIVGSDEVRTGKPSP 151 (287)
Q Consensus 84 ---------~~~~-~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~--~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~ 151 (287)
.... ...+++||+.++|+.|+++|++++++||+.... ....+ ...++..+||.++++++.+..||+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~-~~~~l~~~fd~v~~s~~~~~~KP~p 155 (211)
T TIGR02247 77 HDVRIAPVFPLLYGENTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEAL-LPGDIMALFDAVVESCLEGLRKPDP 155 (211)
T ss_pred CCcCchhhHHHHhccccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHh-hhhhhHhhCCEEEEeeecCCCCCCH
Confidence 1111 246789999999999999999999999986543 22233 4457888999999999988899999
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECC
Q 023109 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 152 ~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
+.|..+++++|++|++|+||||+..|+.+|+++|+.++++..
T Consensus 156 ~~~~~~~~~~g~~~~~~l~i~D~~~di~aA~~aG~~~i~v~~ 197 (211)
T TIGR02247 156 RIYQLMLERLGVAPEECVFLDDLGSNLKPAAALGITTIKVSD 197 (211)
T ss_pred HHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 999999999999999999999999999999999999999976
No 39
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.93 E-value=1.5e-24 Score=178.57 Aligned_cols=127 Identities=28% Similarity=0.381 Sum_probs=113.4
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcE
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~ 168 (287)
..++.|++.+.|+.++++ ++++++||+....+..++ ..+|+.++||.++.|++.+..||+|++|..+++.+|++|+++
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l-~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~ 174 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKL-RQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEA 174 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHH-HHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceE
Confidence 478999999999999999 999999999999999999 888999999999999999999999999999999999999999
Q ss_pred EEEeCCH-hhHHHHHHcCCeEEEECCCCCcc-ccccCCcEEeCCccCcCcc
Q 023109 169 LVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT-HRYTAADEVINSLLDLRPE 217 (287)
Q Consensus 169 l~iGDs~-~Dv~~a~~aG~~~i~v~~~~~~~-~~~~~a~~v~~~l~el~~~ 217 (287)
+||||+. ||+.+|+++|+++++++.+.... +....+++.+.++.++...
T Consensus 175 l~VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i~~l~~l~~~ 225 (229)
T COG1011 175 LFVGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEISSLAELLDL 225 (229)
T ss_pred EEECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEEcCHHHHHHH
Confidence 9999999 78899999999999999854322 1225678888888877654
No 40
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.92 E-value=3.6e-24 Score=172.37 Aligned_cols=176 Identities=15% Similarity=0.153 Sum_probs=130.8
Q ss_pred cEEEEecCCcccccHHHHH-HHHHHHHHHcCCCC---------CHHHHHHHhC-CCHHHHHHHHHHHhCCCCCHHHHHHH
Q 023109 10 SCVILDLDGTLLNTDGMFS-EVLKTFLVKYGKEW---------DGREKHKIVG-KTPLEEAAIIVEDYGLPCAKHEFVNE 78 (287)
Q Consensus 10 k~iifDlDGTL~d~~~~~~-~~~~~~~~~~g~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (287)
.+|+||+||||++.+.... ..+.. ..+... .........| .+..+....+...++.+...+.+...
T Consensus 1 ~~viFDldgvL~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (199)
T PRK09456 1 MLYIFDLGNVIVDIDFNRVLGVWSD---LSRVPLATLKKRFTMGEAFHQHERGEISDEAFAEALCHEMALSLSYEQFAHG 77 (199)
T ss_pred CEEEEeCCCccccCcHHHHHHHHHH---hcCCCHHHHHHHHhcCcHHHHHhcCCCCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3799999999999854211 11111 111110 0011112223 45566667777777765554555444
Q ss_pred HHHHHHhhhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHH
Q 023109 79 VYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA 158 (287)
Q Consensus 79 ~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~ 158 (287)
+.+.+ .+++||+.++|+.++++|++++++||++.......+....++..+|+.++++++++..||+|+.|..++
T Consensus 78 ~~~~~------~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~ 151 (199)
T PRK09456 78 WQAVF------VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVL 151 (199)
T ss_pred HHHHH------hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHH
Confidence 43322 357999999999999999999999999988776655233478888999999999999999999999999
Q ss_pred HHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCC
Q 023109 159 KRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (287)
Q Consensus 159 ~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~ 194 (287)
+++|++|++|+||||+..|+.+|+++|+.++++..+
T Consensus 152 ~~~~~~p~~~l~vgD~~~di~aA~~aG~~~i~~~~~ 187 (199)
T PRK09456 152 QAEGFSAADAVFFDDNADNIEAANALGITSILVTDK 187 (199)
T ss_pred HHcCCChhHeEEeCCCHHHHHHHHHcCCEEEEecCC
Confidence 999999999999999999999999999999999874
No 41
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.92 E-value=7.8e-24 Score=168.35 Aligned_cols=170 Identities=21% Similarity=0.257 Sum_probs=125.1
Q ss_pred cEEEEecCCcccccHHHHHHHHHHHHH-----HcCCCCCHHH-HH----HHhCCCHHHHHHHHHHHhCCCCCHHHHHHHH
Q 023109 10 SCVILDLDGTLLNTDGMFSEVLKTFLV-----KYGKEWDGRE-KH----KIVGKTPLEEAAIIVEDYGLPCAKHEFVNEV 79 (287)
Q Consensus 10 k~iifDlDGTL~d~~~~~~~~~~~~~~-----~~g~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (287)
++|+||+||||+|+...+...+++.+. ++|.+..... .. ...|..... ...... ...+.+...+
T Consensus 1 ~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~g~~~~~----~~~~~~--~~~~~~~~~~ 74 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAGIFLQIDRNITEFVAARLKLSEEEARVLRKDYYREYGTTLAG----LMILHE--IDADEYLRYV 74 (184)
T ss_pred CeEEEeCCCCCCCCcccHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHchHHHH----HHHhhC--CCHHHHHHHH
Confidence 479999999999997777777766543 4455432211 11 112221111 222222 2233333222
Q ss_pred HHHHHhhhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCC----CCCCHHHHH
Q 023109 80 YSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRT----GKPSPDIFL 155 (287)
Q Consensus 80 ~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~----~kp~~~~~~ 155 (287)
.+. ......++++|+.++|+.|+ .+++++||++...+...+ +.+|+..+|+.++++++.+. .||+|+.|.
T Consensus 75 ~~~--~~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l-~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~ 148 (184)
T TIGR01993 75 HGR--LPYEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRAL-NRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYE 148 (184)
T ss_pred hcc--CCHHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHH-HHcCcHhhhCeEEEeecccCccCCCCCCHHHHH
Confidence 221 11235678999999999997 479999999999999999 88899999999999988876 599999999
Q ss_pred HHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEE
Q 023109 156 EAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (287)
Q Consensus 156 ~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v 191 (287)
.+++++|+.|++|++|||+..|+.+|+++|++++++
T Consensus 149 ~~~~~~~~~~~~~l~vgD~~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 149 KALREAGVDPERAIFFDDSARNIAAAKALGMKTVLV 184 (184)
T ss_pred HHHHHhCCCccceEEEeCCHHHHHHHHHcCCEEeeC
Confidence 999999999999999999999999999999999864
No 42
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.91 E-value=2.4e-23 Score=167.36 Aligned_cols=188 Identities=14% Similarity=0.179 Sum_probs=127.8
Q ss_pred CccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-h
Q 023109 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD-H 86 (287)
Q Consensus 8 ~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 86 (287)
|+|+|+||+||||+|+. ..+..+++++|.+. +......+.......... ++. +.....+.+...... .
T Consensus 1 m~k~viFDlDGTLiD~~----~~~~~~~~~~g~~~--~~~~~~~g~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~ 69 (197)
T PHA02597 1 MKPTILTDVDGVLLSWQ----SGLPYFAQKYNIPT--DHILKMIQDERFRDPGEL---FGC--DQELAKKLIEKYNNSDF 69 (197)
T ss_pred CCcEEEEecCCceEchh----hccHHHHHhcCCCH--HHHHHHHhHhhhcCHHHH---hcc--cHHHHHHHhhhhhHHHH
Confidence 37899999999999954 34567777888653 343344443322222222 221 222222222222212 2
Q ss_pred hccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcc----ccceeeccCCcCCCCCCHHHHHHHHHHcC
Q 023109 87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE----SFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (287)
Q Consensus 87 ~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~----~fd~i~~~~~~~~~kp~~~~~~~~~~~l~ 162 (287)
.....++||+.++|+.|++. ++++++||.+........ .++++.. +|+.+++++. .||+|+.+..+++++|
T Consensus 70 ~~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~-~~~~l~~~f~~~f~~i~~~~~---~~~kp~~~~~a~~~~~ 144 (197)
T PHA02597 70 IRYLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLN-RQFNLNALFPGAFSEVLMCGH---DESKEKLFIKAKEKYG 144 (197)
T ss_pred HHhccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHH-hhCCHHHhCCCcccEEEEecc---CcccHHHHHHHHHHhC
Confidence 24577999999999999987 478888887766555455 6666654 4566776665 3677899999999999
Q ss_pred CCCCcEEEEeCCHhhHHHHHHc--CCeEEEECCCCCccccccCCcEEeCCccCcC
Q 023109 163 MEPSSSLVIEDSVIGVVAGKAA--GMEVVAVPSLPKQTHRYTAADEVINSLLDLR 215 (287)
Q Consensus 163 ~~~~~~l~iGDs~~Dv~~a~~a--G~~~i~v~~~~~~~~~~~~a~~v~~~l~el~ 215 (287)
|++++||||+..|+.+|+++ |+++++++.+.. .....+++.+.++.|+.
T Consensus 145 --~~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~--~~~~~~~~~~~~~~~~~ 195 (197)
T PHA02597 145 --DRVVCFVDDLAHNLDAAHEALSQLPVIHMLRGER--DHIPKLAHRVKSWNDIE 195 (197)
T ss_pred --CCcEEEeCCCHHHHHHHHHHHcCCcEEEecchhh--ccccchhhhhccHHHHh
Confidence 88999999999999999999 999999988753 22234467777777664
No 43
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.91 E-value=8.9e-23 Score=157.58 Aligned_cols=154 Identities=25% Similarity=0.414 Sum_probs=120.9
Q ss_pred EEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhccC
Q 023109 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKV 90 (287)
Q Consensus 11 ~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (287)
+|+||+||||+|+...+..+++.++++++. +.+.+....|...... ..... ..+++ .......
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~-~~~~~------~~~~~--------~~~~~~~ 63 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGE--DFQALKALRGLAEELL-YRIAT------SFEEL--------LGYDAEE 63 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcc--cHHHHHHHHccChHHH-HHHHH------HHHHH--------hCcchhh
Confidence 489999999999998999999999998875 3333333333322211 11111 01111 1111345
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~ 170 (287)
...||+.++|+.|+++|++++++||++...+...+ +++ +..+|+.++++++.. .||+|+.+.+++++++++| +|+|
T Consensus 64 ~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~-~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l~ 139 (154)
T TIGR01549 64 AYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLL-RKH-LGDYFDLILGSDEFG-AKPEPEIFLAALESLGLPP-EVLH 139 (154)
T ss_pred eeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHH-HHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-CEEE
Confidence 66799999999999999999999999999999888 665 778899999998887 9999999999999999999 9999
Q ss_pred EeCCHhhHHHHHHcC
Q 023109 171 IEDSVIGVVAGKAAG 185 (287)
Q Consensus 171 iGDs~~Dv~~a~~aG 185 (287)
|||+..|+.+|+++|
T Consensus 140 iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 140 VGDNLNDIEGARNAG 154 (154)
T ss_pred EeCCHHHHHHHHHcc
Confidence 999999999999987
No 44
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.90 E-value=3.3e-23 Score=163.48 Aligned_cols=161 Identities=18% Similarity=0.295 Sum_probs=123.5
Q ss_pred EEEEecCCcccccHHHHHHHHHHHHHHcCCC---CC-----HHHHHHHhC--CCHHH----HHHHHHHHhCCCCCHHHHH
Q 023109 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKE---WD-----GREKHKIVG--KTPLE----EAAIIVEDYGLPCAKHEFV 76 (287)
Q Consensus 11 ~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~---~~-----~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~ 76 (287)
+|+||+||||+|+...+..+++.++++.+.. +. ........+ ....+ .+..+...++.+...+ .
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~- 78 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLAAIAPEGGAFSDLWRAKQQEYSWRRSLMGDRRAFPEDTVRALRYIADRLGLDAEPK-Y- 78 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHcCCCCCHH-H-
Confidence 5899999999999988888888777664421 11 111112222 11122 4566677777654332 2
Q ss_pred HHHHHHHHhhhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHH
Q 023109 77 NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLE 156 (287)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~ 156 (287)
.+.+...+...+++||+.++|+ +++++||++...++..+ +++|+..+|+.++++++++..||+|+.|..
T Consensus 79 ---~~~~~~~~~~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~ 147 (175)
T TIGR01493 79 ---GERLRDAYKNLPPWPDSAAALA-------RVAILSNASHWAFDQFA-QQAGLPWYFDRAFSVDTVRAYKPDPVVYEL 147 (175)
T ss_pred ---HHHHHHHHhcCCCCCchHHHHH-------HHhhhhCCCHHHHHHHH-HHCCCHHHHhhhccHhhcCCCCCCHHHHHH
Confidence 2333333456789999999998 38899999999999999 889999999999999998999999999999
Q ss_pred HHHHcCCCCCcEEEEeCCHhhHHHHHHc
Q 023109 157 AAKRLNMEPSSSLVIEDSVIGVVAGKAA 184 (287)
Q Consensus 157 ~~~~l~~~~~~~l~iGDs~~Dv~~a~~a 184 (287)
+++++|++|++|+||||+..|+.+|+++
T Consensus 148 ~~~~~~~~p~~~l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 148 VFDTVGLPPDRVLMVAAHQWDLIGARKF 175 (175)
T ss_pred HHHHHCCCHHHeEeEecChhhHHHHhcC
Confidence 9999999999999999999999999864
No 45
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.90 E-value=8e-23 Score=167.08 Aligned_cols=189 Identities=19% Similarity=0.190 Sum_probs=128.9
Q ss_pred cccCCccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHH-HHH-hC-CCHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 023109 4 PLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HKI-VG-KTPLEEAAIIVEDYGLPCAKHEFVNEVY 80 (287)
Q Consensus 4 ~~~~~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (287)
++++++++++||+||||++++. +.++++.+|........ ... .+ ....+........+.. ...+
T Consensus 9 ~~~~~~k~iiFD~DGTL~~~~~-----~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~------- 75 (219)
T TIGR00338 9 PLLRSKKLVVFDMDSTLINAET-----IDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKG-LPVE------- 75 (219)
T ss_pred hhhccCCEEEEeCcccCCCchH-----HHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC-CCHH-------
Confidence 4566789999999999999853 44556666654222211 111 11 1222222222222211 1111
Q ss_pred HHHHhhhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeec-------cC---CcCCCCCC
Q 023109 81 SMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG-------SD---EVRTGKPS 150 (287)
Q Consensus 81 ~~~~~~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~-------~~---~~~~~kp~ 150 (287)
.+.......++.||+.++++.++++|++++++|++....++..+ +.+|+..+|+..+. +. .....+|+
T Consensus 76 -~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 153 (219)
T TIGR00338 76 -LLKEVRENLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVK-DKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYK 153 (219)
T ss_pred -HHHHHHhcCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCCceEeeEEEEECCEEEEEecCcccCCccc
Confidence 12222345679999999999999999999999999999999888 88898887753221 11 12235678
Q ss_pred HHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCc
Q 023109 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSL 211 (287)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l 211 (287)
+..++++++++++++++|+||||+.+|+++++.+|+.+++ +. .+.....+++++.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~-~~---~~~~~~~a~~~i~~~ 210 (219)
T TIGR00338 154 GKTLLILLRKEGISPENTVAVGDGANDLSMIKAAGLGIAF-NA---KPKLQQKADICINKK 210 (219)
T ss_pred HHHHHHHHHHcCCCHHHEEEEECCHHHHHHHHhCCCeEEe-CC---CHHHHHhchhccCCC
Confidence 9999999999999999999999999999999999998754 32 234455677776643
No 46
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.89 E-value=6.4e-22 Score=158.69 Aligned_cols=188 Identities=26% Similarity=0.272 Sum_probs=140.9
Q ss_pred cCCccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHH------------------hC-CCHHHHHHHHHHHh
Q 023109 6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKI------------------VG-KTPLEEAAIIVEDY 66 (287)
Q Consensus 6 ~~~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------~~-~~~~~~~~~~~~~~ 66 (287)
.+++|+|+||++|||+.+.......+..+.+.+|++.+....... .+ .+..++...+....
T Consensus 4 ~~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~lv~~~ 83 (237)
T KOG3085|consen 4 LMRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLEYDDSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPKLVEST 83 (237)
T ss_pred ccceEEEEEeCCCceeecCCccHHHHHHHHHHhCCCCCHHHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHHHHHHH
Confidence 467899999999999997777777888889999988544333211 11 24455555444333
Q ss_pred CCCCCH---HHHHHHHH-HHHHhh-hccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeecc
Q 023109 67 GLPCAK---HEFVNEVY-SMFSDH-LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS 141 (287)
Q Consensus 67 ~~~~~~---~~~~~~~~-~~~~~~-~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~ 141 (287)
...... ++....+. ..+... .....+.+++.++++.+|++|..++++||.+...- ..+ ..+|+..+||.++.|
T Consensus 84 f~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~-~~l-~~~~l~~~fD~vv~S 161 (237)
T KOG3085|consen 84 FGKAGIDYEEELLENFSFRLFSTFAPSAWKYLDGMQELLQKLRKKGTILGIISNFDDRLR-LLL-LPLGLSAYFDFVVES 161 (237)
T ss_pred hccccchhHHHHHhhhhhheeccccccCceeccHHHHHHHHHHhCCeEEEEecCCcHHHH-HHh-hccCHHHhhhhhhhh
Confidence 222111 11111111 111111 12456778888999999999999999999988764 455 788999999999999
Q ss_pred CCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCH-hhHHHHHHcCCeEEEECCCC
Q 023109 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLP 195 (287)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~-~Dv~~a~~aG~~~i~v~~~~ 195 (287)
.+.+..||+|.+|..+++++++.|++|++|||+. ||+++|+++|+.++.+.+..
T Consensus 162 ~e~g~~KPDp~If~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~ 216 (237)
T KOG3085|consen 162 CEVGLEKPDPRIFQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVDNSI 216 (237)
T ss_pred hhhccCCCChHHHHHHHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEcccc
Confidence 9999999999999999999999999999999999 89999999999999998743
No 47
>PRK08238 hypothetical protein; Validated
Probab=99.88 E-value=6e-23 Score=183.37 Aligned_cols=209 Identities=14% Similarity=0.114 Sum_probs=155.7
Q ss_pred CccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Q 023109 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHL 87 (287)
Q Consensus 8 ~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (287)
.-.-++||+||||++++..++..+ ...++.+...+....+... ....+++.+.+...-..
T Consensus 9 ~~~pl~~DlDgTLi~td~l~e~~~-----------------~~l~~~p~~~~~l~~~~~~---g~a~lK~~~a~~~~~d~ 68 (479)
T PRK08238 9 RDLPLVVDLDGTLIRTDLLHESIF-----------------ALLRRNPLALLRLPLWLLR---GKAALKRRLARRVDLDV 68 (479)
T ss_pred CCCCEEEeCCCCccccchHHHHHH-----------------HHHHhChHHHHHHHHHHHh---cHHHHHHHHHhhcCCCh
Confidence 345699999999999999887766 3445566666555555443 45666666666443334
Q ss_pred ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCc
Q 023109 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (287)
Q Consensus 88 ~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~ 167 (287)
...+++|++.+++++++++|++++++|++++..++..+ +++|+ ||.++++++..+.||+++. ..+.+.++ .++
T Consensus 69 ~~lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~-~~lGl---Fd~Vigsd~~~~~kg~~K~-~~l~~~l~--~~~ 141 (479)
T PRK08238 69 ATLPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVA-AHLGL---FDGVFASDGTTNLKGAAKA-AALVEAFG--ERG 141 (479)
T ss_pred hhCCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCC---CCEEEeCCCccccCCchHH-HHHHHHhC--ccC
Confidence 56788999999999999999999999999999999998 88888 9999999988778776543 33445554 356
Q ss_pred EEEEeCCHhhHHHHHHcCCeEEEECCCC-Ccccc--ccCCcEEeCCccCcCccccCCCCccccccCCCCCCCceeeccce
Q 023109 168 SLVIEDSVIGVVAGKAAGMEVVAVPSLP-KQTHR--YTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVV 244 (287)
Q Consensus 168 ~l~iGDs~~Dv~~a~~aG~~~i~v~~~~-~~~~~--~~~a~~v~~~l~el~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~ 244 (287)
++|+|||.+|+++++.+|-+. .++.+. ..... ..-+..++++.......+.++.|+|||+||.+.+.|...+|...
T Consensus 142 ~~yvGDS~~Dlp~~~~A~~av-~Vn~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~p~l~a~~~~ 220 (479)
T PRK08238 142 FDYAGNSAADLPVWAAARRAI-VVGASPGVARAARALGPVERVFPPRPARLRTWLKALRVHQWAKNLLVFVPLLAAHQFG 220 (479)
T ss_pred eeEecCCHHHHHHHHhCCCeE-EECCCHHHHHHHHHcCCcceecCCCchHHHHHHHHhCCcHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999544 555432 22222 22234555555555567889999999999999999998877653
No 48
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.87 E-value=3.5e-21 Score=155.25 Aligned_cols=178 Identities=15% Similarity=0.114 Sum_probs=118.3
Q ss_pred CccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHH--HHHhCCCHHHH-HHHHHHHhCCCCCHHHHHHHHHHHHH
Q 023109 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK--HKIVGKTPLEE-AAIIVEDYGLPCAKHEFVNEVYSMFS 84 (287)
Q Consensus 8 ~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (287)
++|+|+||+||||++++..+ ..+...++........ ....|...... .......+... . ..+ ..+.+.
T Consensus 3 ~~k~viFD~DGTLid~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~-~~~---~~~~~~ 73 (201)
T TIGR01491 3 MIKLIIFDLDGTLTDVMSSW----EYLHRRLETCGLAKKNAELFFSGRISYEEWARLDASLWKRR-S-GRL---RREEVE 73 (201)
T ss_pred cceEEEEeCCCCCcCCccHH----HHHHHHhCchHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhc-c-cCC---CHHHHH
Confidence 57899999999999976432 2233344543211111 12222222222 11111111100 0 000 011122
Q ss_pred hhhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCC----------CHHHH
Q 023109 85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKP----------SPDIF 154 (287)
Q Consensus 85 ~~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp----------~~~~~ 154 (287)
..+...+++||+.++|+.++++|++++|+|++....++..+ +++|+...|+..+.+++.+..+| +++.+
T Consensus 74 ~~~~~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~ 152 (201)
T TIGR01491 74 EIFKEISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVA-EKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAV 152 (201)
T ss_pred HHHHhCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-HHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHH
Confidence 22345689999999999999999999999999999999999 88898887776665554443333 34678
Q ss_pred HHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCC
Q 023109 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195 (287)
Q Consensus 155 ~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~ 195 (287)
.++++.+++++++++|||||.+|+++++.+|+.+++.+.+.
T Consensus 153 ~~~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~ 193 (201)
T TIGR01491 153 ERLKRELNPSLTETVAVGDSKNDLPMFEVADISISLGDEGH 193 (201)
T ss_pred HHHHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCcc
Confidence 88899999999999999999999999999999888777643
No 49
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.87 E-value=2e-21 Score=153.09 Aligned_cols=123 Identities=24% Similarity=0.309 Sum_probs=99.2
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCCh---------------HHHHHHHHhhcCCccccceeecc-----------CC
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVGS-----------DE 143 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~---------------~~~~~~l~~~~gl~~~fd~i~~~-----------~~ 143 (287)
..++||+.++|++|+++|++++++||.+. ..+...+ ...++. |+.++.+ ++
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~--~~~i~~~~~~~~~~~~~~~~ 101 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSL-AERDVD--LDGIYYCPHHPEGVEEFRQV 101 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHcCCC--ccEEEECCCCCcccccccCC
Confidence 46889999999999999999999999984 2333445 555554 6666543 24
Q ss_pred cCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeE-EEECCCCCcccc-ccCCcEEeCCccCcC
Q 023109 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV-VAVPSLPKQTHR-YTAADEVINSLLDLR 215 (287)
Q Consensus 144 ~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~-i~v~~~~~~~~~-~~~a~~v~~~l~el~ 215 (287)
....||+|+.|..++++++++|++|+||||+..|+.+|+++|+.+ +++..+...... ...++++++++.++.
T Consensus 102 ~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~~~~el~ 175 (176)
T TIGR00213 102 CDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVLNSLADLP 175 (176)
T ss_pred CCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEeccHHHhh
Confidence 557899999999999999999999999999999999999999998 788876543333 346899999998864
No 50
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.87 E-value=6.7e-20 Score=148.17 Aligned_cols=184 Identities=13% Similarity=0.082 Sum_probs=125.0
Q ss_pred ccEEEEecCCcccccHHHHH-------HHHHHHHHHcCCCCCHHHHHHHhCCC-HHHHHHHHHHHhCCCCC---HHHHHH
Q 023109 9 MSCVILDLDGTLLNTDGMFS-------EVLKTFLVKYGKEWDGREKHKIVGKT-PLEEAAIIVEDYGLPCA---KHEFVN 77 (287)
Q Consensus 9 ~k~iifDlDGTL~d~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~ 77 (287)
+++|++|+.||+++-.-... ..+..++............+...+.. .......+......+.. .+.+..
T Consensus 1 ~~~~l~diegt~~~isfv~~~lfpy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~k~~~lk~lqg 80 (220)
T TIGR01691 1 IKNVLLDIEGTTGSISFVHDVLFPYAASRLESFVNDNYESTIVENLRELGKTPEELILLRKLHAEMDKDRKATPLKTLQG 80 (220)
T ss_pred CCEEEEecCCCcccHHHHHhhhhHHHHHHHHHHHHHhCCCHHHHHHHHhccCCcHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence 57899999999997632221 12222233222111122222222221 12333333333333322 334444
Q ss_pred H-HHHHHHhhhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhc---CCccccceeeccCCcCCCCCCHHH
Q 023109 78 E-VYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH---GWNESFSVIVGSDEVRTGKPSPDI 153 (287)
Q Consensus 78 ~-~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~---gl~~~fd~i~~~~~~~~~kp~~~~ 153 (287)
. +.+.|.......+++||+.++|++++++|++++|+||++....+..+ ++. ++..+|+.++.. ....||+|+.
T Consensus 81 ~iw~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~-~~~~~~~L~~~f~~~fd~--~~g~KP~p~~ 157 (220)
T TIGR01691 81 LIWRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLF-GHSDAGNLTPYFSGYFDT--TVGLKTEAQS 157 (220)
T ss_pred HHHHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-hhccccchhhhcceEEEe--CcccCCCHHH
Confidence 3 34444443346789999999999999999999999999998887777 664 566677776642 2337999999
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCC
Q 023109 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195 (287)
Q Consensus 154 ~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~ 195 (287)
|.++++++|++|++|+||||+..|+.+|+++|+.++++.++.
T Consensus 158 y~~i~~~lgv~p~e~lfVgDs~~Di~AA~~AG~~ti~v~r~g 199 (220)
T TIGR01691 158 YVKIAGQLGSPPREILFLSDIINELDAARKAGLHTGQLVRPG 199 (220)
T ss_pred HHHHHHHhCcChhHEEEEeCCHHHHHHHHHcCCEEEEEECCC
Confidence 999999999999999999999999999999999999998754
No 51
>PLN02954 phosphoserine phosphatase
Probab=99.86 E-value=6.1e-21 Score=156.50 Aligned_cols=194 Identities=19% Similarity=0.201 Sum_probs=131.4
Q ss_pred CCccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHH-HHHHhC--CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 023109 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGRE-KHKIVG--KTPLEEAAIIVEDYGLPCAKHEFVNEVYSMF 83 (287)
Q Consensus 7 ~~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (287)
+.+|+|+||+||||++++. +..+++.+|....... ...+.+ .+..+.+...+..... ..+ .+...+
T Consensus 10 ~~~k~viFDfDGTL~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~----~~~~~~ 78 (224)
T PLN02954 10 RSADAVCFDVDSTVCVDEG-----IDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKP--SLS----QVEEFL 78 (224)
T ss_pred ccCCEEEEeCCCcccchHH-----HHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCC--CHH----HHHHHH
Confidence 4689999999999999854 3666777776432222 223333 3334444443333321 122 222222
Q ss_pred HhhhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCc--ccccee---------eccCC---cCCCCC
Q 023109 84 SDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN--ESFSVI---------VGSDE---VRTGKP 149 (287)
Q Consensus 84 ~~~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~--~~fd~i---------~~~~~---~~~~kp 149 (287)
.. ....++||+.++++.++++|++++|+|++....++..+ +.+|+. ..|+.. ++.+. ....++
T Consensus 79 ~~--~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l-~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~ 155 (224)
T PLN02954 79 EK--RPPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVA-AILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGG 155 (224)
T ss_pred HH--ccCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCcc
Confidence 22 13568899999999999999999999999999999998 888886 355421 11111 123567
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCC-ccccccCCcEEeCCccCcCc
Q 023109 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK-QTHRYTAADEVINSLLDLRP 216 (287)
Q Consensus 150 ~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~-~~~~~~~a~~v~~~l~el~~ 216 (287)
+|+.++++++.++. ++++||||+.+|+.+++++|+.+++...+.. .+.....++++++++.++..
T Consensus 156 K~~~i~~~~~~~~~--~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~el~~ 221 (224)
T PLN02954 156 KAEAVQHIKKKHGY--KTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVTDFQDLIE 221 (224)
T ss_pred HHHHHHHHHHHcCC--CceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEECCHHHHHH
Confidence 88999999988874 6899999999999999998888766544332 22234568999999988754
No 52
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.86 E-value=2.2e-21 Score=153.66 Aligned_cols=125 Identities=28% Similarity=0.333 Sum_probs=100.3
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCCh---------------HHHHHHHHhhcCCccccceeecc-----CCcCCCCC
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVGS-----DEVRTGKP 149 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~---------------~~~~~~l~~~~gl~~~fd~i~~~-----~~~~~~kp 149 (287)
..++||+.++|++|+++|++++++||.+. ..+...+ +++|+ .|+.++.+ ++....||
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~--~f~~i~~~~~~~~~~~~~~KP 104 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSL-ADRGG--RLDGIYYCPHHPEDGCDCRKP 104 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHcCC--ccceEEECCCCCCCCCcCCCC
Confidence 46889999999999999999999999863 2234445 55666 37776643 34577999
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCcccc-ccCC--cEEeCCccCcCcc
Q 023109 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAA--DEVINSLLDLRPE 217 (287)
Q Consensus 150 ~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~-~~~a--~~v~~~l~el~~~ 217 (287)
+|+.|.++++.+|++|++|+||||+.+|+.+|+++|+.++++..+...... ...+ +++++++.++...
T Consensus 105 ~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii~~l~el~~~ 175 (181)
T PRK08942 105 KPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVLDSLADLPQA 175 (181)
T ss_pred CHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceeecCHHHHHHH
Confidence 999999999999999999999999999999999999999999876543222 3345 8899988887544
No 53
>PRK06769 hypothetical protein; Validated
Probab=99.85 E-value=2.5e-21 Score=151.84 Aligned_cols=126 Identities=14% Similarity=0.202 Sum_probs=100.1
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChH--------HHHHHHHhhcCCccccceee-ccCCcCCCCCCHHHHHHHHHH
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRA--------TIESKISYQHGWNESFSVIV-GSDEVRTGKPSPDIFLEAAKR 160 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~--------~~~~~l~~~~gl~~~fd~i~-~~~~~~~~kp~~~~~~~~~~~ 160 (287)
..++||+.++|++|+++|++++++||.+.. .....+ +.+|+..+|.... ++++....||+|+.|.+++++
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~ 105 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQEL-KGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEK 105 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHH-HhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHH
Confidence 357899999999999999999999998641 123345 6667755544333 455667899999999999999
Q ss_pred cCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCcc-------cc-ccCCcEEeCCccCcCc
Q 023109 161 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQT-------HR-YTAADEVINSLLDLRP 216 (287)
Q Consensus 161 l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~-------~~-~~~a~~v~~~l~el~~ 216 (287)
++++|++|+||||+..|+.+|+++|+.++++.++.... .. ...++++++++.++..
T Consensus 106 l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el~~ 169 (173)
T PRK06769 106 HGLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDAVN 169 (173)
T ss_pred cCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHHHHH
Confidence 99999999999999999999999999999998865321 11 3457888888887754
No 54
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.85 E-value=2.8e-20 Score=158.68 Aligned_cols=184 Identities=15% Similarity=0.153 Sum_probs=127.9
Q ss_pred CCccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHH--HHhC-CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 023109 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKH--KIVG-KTPLEEAAIIVEDYGLPCAKHEFVNEVYSMF 83 (287)
Q Consensus 7 ~~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (287)
..+++++||+||||+.. +.+.++.+.+|......... ...+ ....+.+......+.. ..+.+.
T Consensus 108 ~~~~LvvfDmDGTLI~~-----e~i~eia~~~g~~~~v~~it~~~m~Geldf~esl~~rv~~l~g--~~~~il------- 173 (322)
T PRK11133 108 RTPGLLVMDMDSTAIQI-----ECIDEIAKLAGTGEEVAEVTERAMRGELDFEASLRQRVATLKG--ADANIL------- 173 (322)
T ss_pred cCCCEEEEECCCCCcch-----HHHHHHHHHhCCchHHHHHHHHHHcCCcCHHHHHHHHHHHhCC--CCHHHH-------
Confidence 46899999999999844 34555666666644332221 1222 2233333322222211 111111
Q ss_pred HhhhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccc-------eeeccC---CcCCCCCCHHH
Q 023109 84 SDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-------VIVGSD---EVRTGKPSPDI 153 (287)
Q Consensus 84 ~~~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd-------~i~~~~---~~~~~kp~~~~ 153 (287)
......+++.||+.++++.+++.|++++|+|++....++... +++|+...+. ..+.+. +....+||++.
T Consensus 174 ~~v~~~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~-~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~ 252 (322)
T PRK11133 174 QQVRENLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLR-DKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADT 252 (322)
T ss_pred HHHHHhCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHH-HHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHH
Confidence 222245789999999999999999999999999988888777 7788765432 111111 23356899999
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeC
Q 023109 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN 209 (287)
Q Consensus 154 ~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~ 209 (287)
++++++++|+++++|++|||+.||++|++.||+.+++ +. .+..+..+++++.
T Consensus 253 L~~la~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~-nA---kp~Vk~~Ad~~i~ 304 (322)
T PRK11133 253 LTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAY-HA---KPKVNEQAQVTIR 304 (322)
T ss_pred HHHHHHHcCCChhhEEEEECCHHHHHHHHHCCCeEEe-CC---CHHHHhhCCEEec
Confidence 9999999999999999999999999999999998887 44 5666788888886
No 55
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.85 E-value=6.7e-21 Score=145.65 Aligned_cols=104 Identities=26% Similarity=0.342 Sum_probs=85.8
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCCh---------------HHHHHHHHhhcCCcc--ccceee-ccCCcCCCCCCH
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNE--SFSVIV-GSDEVRTGKPSP 151 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~---------------~~~~~~l~~~~gl~~--~fd~i~-~~~~~~~~kp~~ 151 (287)
..++||+.++|+.|+++|++++++||.+. ..+...+ +++|+.. .|..+. .++..+..||+|
T Consensus 26 ~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~l~~~~~~~~~~~~~~~~~~~KP~~ 104 (147)
T TIGR01656 26 WQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELL-RQLGVAVDGVLFCPHHPADNCSCRKPKP 104 (147)
T ss_pred eEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHH-HhCCCceeEEEECCCCCCCCCCCCCCCH
Confidence 35789999999999999999999999874 3455666 7778752 122222 245556689999
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCC
Q 023109 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (287)
Q Consensus 152 ~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~ 194 (287)
+.|..+++++++++++|+||||+..|+.+|+++|+.+++++.+
T Consensus 105 ~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 105 GLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred HHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEecCC
Confidence 9999999999999999999999999999999999999999763
No 56
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.82 E-value=5.8e-19 Score=143.80 Aligned_cols=146 Identities=16% Similarity=0.125 Sum_probs=107.4
Q ss_pred EEEEecCCcccccHHHHHHHHHHHHHHcCCC-CCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh-c
Q 023109 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHL-C 88 (287)
Q Consensus 11 ~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 88 (287)
+|+||+||||+|+...+ .+|.. .+...++.+.+....+. +.... .
T Consensus 65 aViFDlDgTLlDSs~~~---------~~G~~~~s~~~~~~l~g~~~w~~------------------------~~~~~~~ 111 (237)
T TIGR01672 65 AVSFDIDDTVLFSSPGF---------WRGKKTFSPGSEDYLKNQVFWEK------------------------VNNGWDE 111 (237)
T ss_pred EEEEeCCCccccCcHHH---------hCCcccCCHHHhhhhcChHHHHH------------------------HHHhccc
Confidence 89999999999997755 14544 23333333333222211 11111 2
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCC----ChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCC
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNS----HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~----~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~ 164 (287)
...+.+++.++|+.++++|++++++||+ ....++..+ +++|+..+|+.+++++.....||++. ..++..++
T Consensus 112 ~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll-~~lGi~~~f~~i~~~d~~~~~Kp~~~---~~l~~~~i- 186 (237)
T TIGR01672 112 FSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLA-KNFHIPAMNPVIFAGDKPGQYQYTKT---QWIQDKNI- 186 (237)
T ss_pred CCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHH-HHhCCchheeEEECCCCCCCCCCCHH---HHHHhCCC-
Confidence 3456667999999999999999999998 556677777 88999999999999888777777764 34555554
Q ss_pred CCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCc
Q 023109 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ 197 (287)
Q Consensus 165 ~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~ 197 (287)
++||||+.+|+.+|+++|+.++.+..+...
T Consensus 187 ---~i~vGDs~~DI~aAk~AGi~~I~V~~g~~s 216 (237)
T TIGR01672 187 ---RIHYGDSDNDITAAKEAGARGIRILRASNS 216 (237)
T ss_pred ---eEEEeCCHHHHHHHHHCCCCEEEEEecCCC
Confidence 799999999999999999999999876543
No 57
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.82 E-value=1.7e-19 Score=135.52 Aligned_cols=97 Identities=24% Similarity=0.445 Sum_probs=85.1
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCC--------hHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHc-
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSH--------RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL- 161 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~--------~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l- 161 (287)
.++|++.++|+.|+++|++++++||++ ...++..+ +++++. ++.++.+. ...||+|+.|..+++.+
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l-~~~~l~--~~~~~~~~--~~~KP~~~~~~~~~~~~~ 99 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRL-EELGVP--IDVLYACP--HCRKPKPGMFLEALKRFN 99 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHH-HHCCCC--EEEEEECC--CCCCCChHHHHHHHHHcC
Confidence 578999999999999999999999998 77788888 888885 34444443 56799999999999999
Q ss_pred CCCCCcEEEEeC-CHhhHHHHHHcCCeEEEEC
Q 023109 162 NMEPSSSLVIED-SVIGVVAGKAAGMEVVAVP 192 (287)
Q Consensus 162 ~~~~~~~l~iGD-s~~Dv~~a~~aG~~~i~v~ 192 (287)
+++|++++|||| +..|+.+|+++|+.+++++
T Consensus 100 ~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 100 EIDPEESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred CCChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 599999999999 6899999999999999886
No 58
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.81 E-value=2e-20 Score=145.16 Aligned_cols=107 Identities=16% Similarity=0.069 Sum_probs=95.4
Q ss_pred ccCCCCCcHHHHHHHHHHCCCCEEEEeCC-ChHHHHHHHHhhcCCc---------cccceeeccCCcCCCCCCHHHHHHH
Q 023109 88 CKVKALPGANRLIKHLSCHGVPMALASNS-HRATIESKISYQHGWN---------ESFSVIVGSDEVRTGKPSPDIFLEA 157 (287)
Q Consensus 88 ~~~~~~~g~~~~l~~l~~~g~~v~l~T~~-~~~~~~~~l~~~~gl~---------~~fd~i~~~~~~~~~kp~~~~~~~~ 157 (287)
...+++||+.++|+.|+++|++++++||+ ....++..+ +.+++. .+|+.++++++....||.+.+++.+
T Consensus 42 ~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L-~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~ 120 (174)
T TIGR01685 42 TEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEIL-GTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKV 120 (174)
T ss_pred CEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHH-HhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHh
Confidence 35788999999999999999999999998 888888888 888988 9999999998876677777777777
Q ss_pred HHHc--CCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCC
Q 023109 158 AKRL--NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195 (287)
Q Consensus 158 ~~~l--~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~ 195 (287)
.+.+ ++.|++|+||||++.|+.+|+++|+.++++..+.
T Consensus 121 ~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~ 160 (174)
T TIGR01685 121 NKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPSGM 160 (174)
T ss_pred hhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCc
Confidence 7777 7999999999999999999999999999998854
No 59
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.81 E-value=2.6e-19 Score=138.14 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=90.5
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCC---------------hHHHHHHHHhhcCCccccceee-c----cCCcCCCCC
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSH---------------RATIESKISYQHGWNESFSVIV-G----SDEVRTGKP 149 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~---------------~~~~~~~l~~~~gl~~~fd~i~-~----~~~~~~~kp 149 (287)
++++||+.++|++|+++|++++++||.+ ...+...+ +++|+. |+.++ + +++....||
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l-~~~gl~--fd~ii~~~~~~~~~~~~~KP 104 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIF-RSQGII--FDDVLICPHFPDDNCDCRKP 104 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHCCCc--eeEEEECCCCCCCCCCCCCC
Confidence 5789999999999999999999999973 44566677 888886 87654 4 477888999
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCC
Q 023109 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (287)
Q Consensus 150 ~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~ 194 (287)
+++.+..+++.+++++++++||||+..|+.+|+++|+.++++..+
T Consensus 105 ~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~~ 149 (161)
T TIGR01261 105 KIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDEE 149 (161)
T ss_pred CHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEEChh
Confidence 999999999999999999999999999999999999999999884
No 60
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.80 E-value=3.1e-18 Score=139.83 Aligned_cols=190 Identities=14% Similarity=0.165 Sum_probs=122.5
Q ss_pred cEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHH-H-hC-CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Q 023109 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHK-I-VG-KTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH 86 (287)
Q Consensus 10 k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (287)
++|+||+||||++++... . ++++++. ........ . .+ .+..+.+...+..+... .. +.+.+.+.
T Consensus 4 ~~vifDfDgTi~~~d~~~-~----~~~~~~~-~~~~~i~~~~~~g~~~~~~~~~~~~~~l~~~-~~----~~~~~~~~-- 70 (219)
T PRK09552 4 IQIFCDFDGTITNNDNII-A----IMKKFAP-PEWEELKDDILSQELSIQEGVGQMFQLLPSN-LK----EEIIQFLL-- 70 (219)
T ss_pred cEEEEcCCCCCCcchhhH-H----HHHHhCH-HHHHHHHHHHHhCCcCHHHHHHHHHHhCCCC-ch----HHHHHHHH--
Confidence 489999999999998754 2 2333332 11222211 1 12 24556666666665422 11 22222222
Q ss_pred hccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcc--cc--ceeeccCCcCCCCCCHHH---------
Q 023109 87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE--SF--SVIVGSDEVRTGKPSPDI--------- 153 (287)
Q Consensus 87 ~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~--~f--d~i~~~~~~~~~kp~~~~--------- 153 (287)
...+++||+.++|+.++++|++++|+|++....++..+ +++ +.. .+ +..+.++.....||.|..
T Consensus 71 -~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il-~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~ 147 (219)
T PRK09552 71 -ETAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLL-QGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGC 147 (219)
T ss_pred -hCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHH-HHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCC
Confidence 34789999999999999999999999999999999988 665 532 22 333444445556666543
Q ss_pred -HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCC-CCccccccCCcEEeCCccCcCcc
Q 023109 154 -FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL-PKQTHRYTAADEVINSLLDLRPE 217 (287)
Q Consensus 154 -~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~-~~~~~~~~~a~~v~~~l~el~~~ 217 (287)
...+++.++..+++|+|||||.+|+++|++||+.++ ... .........+.+.++++.|+...
T Consensus 148 ~K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a--~~~l~~~~~~~~~~~~~~~~f~ei~~~ 211 (219)
T PRK09552 148 CKPSLIRKLSDTNDFHIVIGDSITDLEAAKQADKVFA--RDFLITKCEELGIPYTPFETFHDVQTE 211 (219)
T ss_pred chHHHHHHhccCCCCEEEEeCCHHHHHHHHHCCccee--HHHHHHHHHHcCCCccccCCHHHHHHH
Confidence 357888999999999999999999999999998444 210 00111234456666777766544
No 61
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.79 E-value=3e-18 Score=132.83 Aligned_cols=182 Identities=20% Similarity=0.242 Sum_probs=128.7
Q ss_pred cCCccEEEEecCCcccccHHHHHHHHH----HH-HHHcCCCCCHHHHH-HHhCCCHHHHHHHHHHHhCCCCCHHHHHHHH
Q 023109 6 KKLMSCVILDLDGTLLNTDGMFSEVLK----TF-LVKYGKEWDGREKH-KIVGKTPLEEAAIIVEDYGLPCAKHEFVNEV 79 (287)
Q Consensus 6 ~~~~k~iifDlDGTL~d~~~~~~~~~~----~~-~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (287)
..++++++||+|+||+.....+....+ ++ .+++|...+..... ...-+..-..++.+ ...+...+..++.+.+
T Consensus 12 ~~~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e~a~~L~~~~yk~YG~t~aGL-~~~~~~~d~deY~~~V 90 (244)
T KOG3109|consen 12 GPNYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEEEAEELRESLYKEYGLTMAGL-KAVGYIFDADEYHRFV 90 (244)
T ss_pred CccceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHHhHHHHHH-HHhcccCCHHHHHHHh
Confidence 347899999999999987655544443 22 34566654332211 00001111111111 2223223344443322
Q ss_pred HHHHHhhhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcC------CCCCCHHH
Q 023109 80 YSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR------TGKPSPDI 153 (287)
Q Consensus 80 ~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~------~~kp~~~~ 153 (287)
.... -++.+.+.+-.+.+|-.++.++ .+++||+...++.+.+ ..+|+.++|+++++.+... .-||.+++
T Consensus 91 ~~~L--Plq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~L-k~LGieDcFegii~~e~~np~~~~~vcKP~~~a 165 (244)
T KOG3109|consen 91 HGRL--PLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRIL-KKLGIEDCFEGIICFETLNPIEKTVVCKPSEEA 165 (244)
T ss_pred hccC--cHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHH-HHhChHHhccceeEeeccCCCCCceeecCCHHH
Confidence 2211 1245788889999999998764 9999999999999999 9999999999999876433 47999999
Q ss_pred HHHHHHHcCCC-CCcEEEEeCCHhhHHHHHHcCCeEEEECC
Q 023109 154 FLEAAKRLNME-PSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 154 ~~~~~~~l~~~-~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
|+++++..|+. |.++++|+||.++|..|++.|++++++..
T Consensus 166 fE~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~ 206 (244)
T KOG3109|consen 166 FEKAMKVAGIDSPRNTYFFDDSERNIQTAKEVGLKTVLVGR 206 (244)
T ss_pred HHHHHHHhCCCCcCceEEEcCchhhHHHHHhccceeEEEEe
Confidence 99999999998 99999999999999999999999999987
No 62
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.79 E-value=2.4e-18 Score=139.20 Aligned_cols=188 Identities=17% Similarity=0.124 Sum_probs=118.2
Q ss_pred ccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHhC-CCHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHhh
Q 023109 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVG-KTPLEEAAIIVEDYG-LPCAKHEFVNEVYSMFSDH 86 (287)
Q Consensus 9 ~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 86 (287)
+++|+||+||||++ ..+..+.+++|.+.... ...+ ......+........ ...+.+.+ ...
T Consensus 1 ~~~v~FD~DGTL~~------~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~i--------~~~ 63 (205)
T PRK13582 1 MEIVCLDLEGVLVP------EIWIAFAEKTGIPELRA---TTRDIPDYDVLMKQRLDILDEHGLGLADI--------QEV 63 (205)
T ss_pred CeEEEEeCCCCChh------hHHHHHHHHcCChHHHH---HhcCCCCHHHHHHHHHHHHHHcCCCHHHH--------HHH
Confidence 47899999999993 24455666777532110 0011 112222222111111 00112222 222
Q ss_pred hccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCC----cCCCCCCHHHHHHHHHHcC
Q 023109 87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE----VRTGKPSPDIFLEAAKRLN 162 (287)
Q Consensus 87 ~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~----~~~~kp~~~~~~~~~~~l~ 162 (287)
....+++||+.++|+.++++ ++++++|++....++..+ +++|+..+|+..+..++ .+..++.|.....+++.++
T Consensus 64 ~~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~ 141 (205)
T PRK13582 64 IATLDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLM-RQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALK 141 (205)
T ss_pred HHhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHH-HHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHH
Confidence 34578899999999999999 999999999999999988 88899887765433221 1112233444456666677
Q ss_pred CCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcE-EeCCccCcCccc
Q 023109 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADE-VINSLLDLRPEK 218 (287)
Q Consensus 163 ~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~-v~~~l~el~~~~ 218 (287)
..+++|+|||||.+|+++++++|+.+.+ +.. .......+++ +++++.++...+
T Consensus 142 ~~~~~~v~iGDs~~D~~~~~aa~~~v~~-~~~--~~~~~~~~~~~~~~~~~el~~~l 195 (205)
T PRK13582 142 SLGYRVIAAGDSYNDTTMLGEADAGILF-RPP--ANVIAEFPQFPAVHTYDELLAAI 195 (205)
T ss_pred HhCCeEEEEeCCHHHHHHHHhCCCCEEE-CCC--HHHHHhCCcccccCCHHHHHHHH
Confidence 7788999999999999999999986643 221 1112234444 888888886554
No 63
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.76 E-value=4.3e-18 Score=132.20 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=82.8
Q ss_pred CCCcHHHHHHHHHHCCCCEEEEeCCChH------------HHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHH
Q 023109 92 ALPGANRLIKHLSCHGVPMALASNSHRA------------TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK 159 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~l~T~~~~~------------~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~ 159 (287)
++||+.++|+.|+++|++++++||.+.. .++..+ +++|+. ++.++++++....||+|+.+..+++
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l-~~~gl~--~~~ii~~~~~~~~KP~p~~~~~~~~ 119 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFL-EKLKVP--IQVLAATHAGLYRKPMTGMWEYLQS 119 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHH-HHcCCC--EEEEEecCCCCCCCCccHHHHHHHH
Confidence 6799999999999999999999998763 456677 888884 3666666666678999999999999
Q ss_pred HcC--CCCCcEEEEeCCH--------hhHHHHHHcCCeEEE
Q 023109 160 RLN--MEPSSSLVIEDSV--------IGVVAGKAAGMEVVA 190 (287)
Q Consensus 160 ~l~--~~~~~~l~iGDs~--------~Dv~~a~~aG~~~i~ 190 (287)
+++ +++++++||||+. +|+.+|+++|+.++.
T Consensus 120 ~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 120 QYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred HcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 999 9999999999996 699999999998763
No 64
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.76 E-value=6.5e-18 Score=127.16 Aligned_cols=104 Identities=31% Similarity=0.471 Sum_probs=93.4
Q ss_pred hccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCC----------------CCC
Q 023109 87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTG----------------KPS 150 (287)
Q Consensus 87 ~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~----------------kp~ 150 (287)
.....+++++.+++++++++|++++++|++....++..+ +..++...++.+++++..... ||+
T Consensus 20 ~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (139)
T cd01427 20 IEELELYPGVKEALKELKEKGIKLALATNKSRREVLELL-EELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPN 98 (139)
T ss_pred cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHH-HHcCCchhhhheeccchhhhhcccccccccccccccCCCC
Confidence 356789999999999999999999999999999999999 788888888988887655444 999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEE
Q 023109 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (287)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v 191 (287)
+..+..+.+.++..++++++|||+.+|+.+++++|+.++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 99 PDKLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceeeC
Confidence 99999999999999999999999999999999999988764
No 65
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.76 E-value=2.7e-17 Score=131.13 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=80.3
Q ss_pred ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCC--------------------cCCC
Q 023109 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE--------------------VRTG 147 (287)
Q Consensus 88 ~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~--------------------~~~~ 147 (287)
...++.||+.++++.++++|++++++|++....++..+ +++++..+|+.+++++. ...+
T Consensus 69 ~~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 147 (188)
T TIGR01489 69 KSAPIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVL-EGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCG 147 (188)
T ss_pred HhCCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHH-HHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCC
Confidence 34789999999999999999999999999999999888 88899999999987543 1223
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeE
Q 023109 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV 188 (287)
Q Consensus 148 kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~ 188 (287)
.+|++.++.+.+.. +++++||||+.+|+++|+++++.+
T Consensus 148 ~~K~~~~~~~~~~~---~~~~i~iGD~~~D~~aa~~~d~~~ 185 (188)
T TIGR01489 148 CCKGKVIHKLSEPK---YQHIIYIGDGVTDVCPAKLSDVVF 185 (188)
T ss_pred CCHHHHHHHHHhhc---CceEEEECCCcchhchHhcCCccc
Confidence 34566777666543 789999999999999999997543
No 66
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.72 E-value=2.5e-16 Score=127.04 Aligned_cols=180 Identities=17% Similarity=0.135 Sum_probs=116.2
Q ss_pred EEEEecCCcccccHHHHHHHHHHHHHHcCCCCCH------HHHHHHh--CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 023109 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDG------REKHKIV--GKTPLEEAAIIVEDYGLPCAKHEFVNEVYSM 82 (287)
Q Consensus 11 ~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (287)
+++||+||||++.+... ..+...+.+....... ....... +....+....+....-...+.+++.....+.
T Consensus 1 ~a~FD~DgTL~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~ 79 (202)
T TIGR01490 1 LAFFDFDGTLTAKDTLF-IFLKFLASKNILFEELRLPKVLARFEFFLNRGLDYMAYYRAFALDALAGLLEEDVRAIVEEF 79 (202)
T ss_pred CeEEccCCCCCCCchHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 37999999999986543 2233333222111000 0011111 1122233333332121223455665444444
Q ss_pred HHhhhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccce-eec-cC---------CcCCCCCCH
Q 023109 83 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV-IVG-SD---------EVRTGKPSP 151 (287)
Q Consensus 83 ~~~~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~-i~~-~~---------~~~~~kp~~ 151 (287)
+... -...++|++.++++.++++|++++++|++....++..+ +++|+...|.. +.. .+ ....++++.
T Consensus 80 ~~~~-~~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~-~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~ 157 (202)
T TIGR01490 80 VNQK-IESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLA-RILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKV 157 (202)
T ss_pred HHHH-HHHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-HHcCCcceEecceEEcCCCEEeCCccCCCCCChHHH
Confidence 3332 23568999999999999999999999999999999888 88898877654 221 11 122345666
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECC
Q 023109 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 152 ~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
..+++.++..++++++|+++|||.+|+++++.+|..+++.+.
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~~ 199 (202)
T TIGR01490 158 HALAELLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNPD 199 (202)
T ss_pred HHHHHHHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCCC
Confidence 778888899999999999999999999999999988876654
No 67
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.72 E-value=7.8e-16 Score=123.46 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=103.5
Q ss_pred cEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHhCC-CHHHHHHHHHHH---hCCCCCHHHHHHHHHHHHHh
Q 023109 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGK-TPLEEAAIIVED---YGLPCAKHEFVNEVYSMFSD 85 (287)
Q Consensus 10 k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 85 (287)
++++||+||||++. .|.++..+.|... .... ..+. ...++...-+.. .|. +.+.+ .+
T Consensus 2 ~la~FDlD~TLi~~------~w~~~~~~~g~~~--~~~~-~~~~~~~~~~~~~r~~ll~~~g~--~~~~i--------~~ 62 (203)
T TIGR02137 2 EIACLDLEGVLVPE------IWIAFAEKTGIDA--LKAT-TRDIPDYDVLMKQRLRILDEHGL--KLGDI--------QE 62 (203)
T ss_pred eEEEEeCCcccHHH------HHHHHHHHcCCcH--HHHH-hcCCcCHHHHHHHHHHHHHHCCC--CHHHH--------HH
Confidence 56999999999964 3667777777431 1111 1111 222222211111 132 23333 22
Q ss_pred hhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcccccee--------eccCCcCCCCCCHHHHHHH
Q 023109 86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVI--------VGSDEVRTGKPSPDIFLEA 157 (287)
Q Consensus 86 ~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i--------~~~~~~~~~kp~~~~~~~~ 157 (287)
....++++||+.++++.+++.+ +++++|++....++..+ +.+|+...|... +.+... ..++.+....+.
T Consensus 63 ~~~~i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il-~~lgi~~~~an~l~~~~~g~~tG~~~-~~~~~K~~~l~~ 139 (203)
T TIGR02137 63 VIATLKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLM-RQLGFPTLLCHKLEIDDSDRVVGYQL-RQKDPKRQSVIA 139 (203)
T ss_pred HHHhCCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHH-HHcCCchhhceeeEEecCCeeECeee-cCcchHHHHHHH
Confidence 2345689999999999999985 99999999999999988 889998777521 111111 233333333333
Q ss_pred HHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECC
Q 023109 158 AKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 158 ~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
++..+ .++++||||.||+++++.+|..+++...
T Consensus 140 l~~~~---~~~v~vGDs~nDl~ml~~Ag~~ia~~ak 172 (203)
T TIGR02137 140 FKSLY---YRVIAAGDSYNDTTMLSEAHAGILFHAP 172 (203)
T ss_pred HHhhC---CCEEEEeCCHHHHHHHHhCCCCEEecCC
Confidence 44444 4799999999999999999999988776
No 68
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.72 E-value=1.8e-16 Score=127.75 Aligned_cols=103 Identities=19% Similarity=0.283 Sum_probs=87.6
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCC----------cCCCCCCHHHHHHHHH
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE----------VRTGKPSPDIFLEAAK 159 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~----------~~~~kp~~~~~~~~~~ 159 (287)
.++.||+.++++.++++|.+++++|++....++... +.+|++..+...+..++ ....+.|...+.+.++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia-~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~ 154 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIA-ERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA 154 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHH-HHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence 789999999999999999999999999999999888 99998877755444333 1123446677888999
Q ss_pred HcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECC
Q 023109 160 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 160 ~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
.+|+++++++++|||.||++|.+.+|.+.+..+.
T Consensus 155 ~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n~~ 188 (212)
T COG0560 155 ELGIPLEETVAYGDSANDLPMLEAAGLPIAVNPK 188 (212)
T ss_pred HcCCCHHHeEEEcCchhhHHHHHhCCCCeEeCcC
Confidence 9999999999999999999999999988887665
No 69
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.71 E-value=4.2e-17 Score=137.88 Aligned_cols=121 Identities=26% Similarity=0.329 Sum_probs=93.1
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceee---ccCCcCCCCCCHHHHHHHHHHcCCCCCcEE
Q 023109 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIV---GSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~---~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l 169 (287)
++++.+.++.++++|. ++++||.+............+...+|+.+. +.+....+||+|..+..++++++++|++|+
T Consensus 145 y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~l 223 (279)
T TIGR01452 145 YAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPARTL 223 (279)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhEE
Confidence 6788999999998886 789999876543211113345555666554 334456789999999999999999999999
Q ss_pred EEeCCH-hhHHHHHHcCCeEEEECCCCCcccc----------ccCCcEEeCCccCc
Q 023109 170 VIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR----------YTAADEVINSLLDL 214 (287)
Q Consensus 170 ~iGDs~-~Dv~~a~~aG~~~i~v~~~~~~~~~----------~~~a~~v~~~l~el 214 (287)
||||++ .|+.+|+++|+.++++.+|....+. ...|+++++++.++
T Consensus 224 mIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~l 279 (279)
T TIGR01452 224 MVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQEYLAAGQHDLVPDYVVESLADL 279 (279)
T ss_pred EECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHhhhcccccCCCCCEEecccccC
Confidence 999996 8999999999999999987554322 13579999988764
No 70
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.70 E-value=1.4e-17 Score=128.09 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=85.3
Q ss_pred HHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhH
Q 023109 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178 (287)
Q Consensus 99 ~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv 178 (287)
.+++|+++|++++++||.+...+...+ +++|+..+|+. .+|+|+.+.++++++++++++|+||||+.+|+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l-~~~gi~~~~~~---------~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~ 105 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRC-KTLGITHLYQG---------QSNKLIAFSDILEKLALAPENVAYIGDDLIDW 105 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHH-HHcCCCEEEec---------ccchHHHHHHHHHHcCCCHHHEEEECCCHHHH
Confidence 789999999999999999999998888 88898776652 37889999999999999999999999999999
Q ss_pred HHHHHcCCeEEEECCCCCccccccCCcEEeCCcc
Q 023109 179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLL 212 (287)
Q Consensus 179 ~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~ 212 (287)
++++.+|+...+.+. .+..+..+++++++..
T Consensus 106 ~~~~~ag~~~~v~~~---~~~~~~~a~~i~~~~~ 136 (154)
T TIGR01670 106 PVMEKVGLSVAVADA---HPLLIPRADYVTRIAG 136 (154)
T ss_pred HHHHHCCCeEecCCc---CHHHHHhCCEEecCCC
Confidence 999999998444444 2345666788887664
No 71
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.70 E-value=6e-16 Score=125.85 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=105.0
Q ss_pred EEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHH-H-hCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcc
Q 023109 12 VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHK-I-VGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCK 89 (287)
Q Consensus 12 iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (287)
++||+||||++.+... .. ++.++.+........ . .+.+..+.+...+...+.. . .+.+.+.+. ..
T Consensus 2 ~~fDFDgTit~~d~~~-~~----~~~~~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~~~~--~---~~~~~~~~~---~~ 68 (214)
T TIGR03333 2 IICDFDGTITNNDNII-SI----MKQFAPPEWEALKDGVLSKTLSIQEGVGRMFGLLPSS--L---KEEITSFVL---ET 68 (214)
T ss_pred EEeccCCCCCcchhHH-HH----HHHhCcHHHHHHHHHHHcCCccHHHHHHHHHhhCCCc--h---HHHHHHHHH---hc
Confidence 7999999999886533 11 222221110111111 1 1334666666666555432 1 112222222 24
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcccc---ceeeccCCcCCCCCCHHHH----------HH
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF---SVIVGSDEVRTGKPSPDIF----------LE 156 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~f---d~i~~~~~~~~~kp~~~~~----------~~ 156 (287)
.+++||+.++++.++++|++++|+|++....++..+ ++++....+ +.++.++.....+|.|..+ ..
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il-~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~ 147 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLL-EGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPS 147 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHH-HhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHH
Confidence 789999999999999999999999999999999888 665443333 2334444445556665543 46
Q ss_pred HHHHcCCCCCcEEEEeCCHhhHHHHHHcCC
Q 023109 157 AAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 186 (287)
Q Consensus 157 ~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~ 186 (287)
+++.++..+++++||||+.+|+.+|+.||+
T Consensus 148 ~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~ 177 (214)
T TIGR03333 148 LIRKLSEPNDYHIVIGDSVTDVEAAKQSDL 177 (214)
T ss_pred HHHHHhhcCCcEEEEeCCHHHHHHHHhCCe
Confidence 677777788999999999999999999997
No 72
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.70 E-value=2e-17 Score=128.21 Aligned_cols=100 Identities=13% Similarity=0.166 Sum_probs=87.2
Q ss_pred HHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhH
Q 023109 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178 (287)
Q Consensus 99 ~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv 178 (287)
-++.|+++|++++++|+.+...++..+ +++|+..+|+.+ ||+|+.+..+++.+++++++|+||||+.+|+
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l-~~lgi~~~f~~~---------kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi 111 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVRHRA-EELKIKRFHEGI---------KKKTEPYAQMLEEMNISDAEVCYVGDDLVDL 111 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHHHHH-HHCCCcEEEecC---------CCCHHHHHHHHHHcCcCHHHEEEECCCHHHH
Confidence 466788899999999999999999999 999998777632 7899999999999999999999999999999
Q ss_pred HHHHHcCCeEEEECCCCCccccccCCcEEeCCc
Q 023109 179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVINSL 211 (287)
Q Consensus 179 ~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l 211 (287)
.+++.+|+.+++.+. .+..+..++++..+.
T Consensus 112 ~~~~~ag~~~am~nA---~~~lk~~A~~I~~~~ 141 (169)
T TIGR02726 112 SMMKRVGLAVAVGDA---VADVKEAAAYVTTAR 141 (169)
T ss_pred HHHHHCCCeEECcCc---hHHHHHhCCEEcCCC
Confidence 999999999988877 455677778877543
No 73
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.69 E-value=5.1e-16 Score=121.38 Aligned_cols=98 Identities=19% Similarity=0.251 Sum_probs=82.8
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCC-hHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEE
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSH-RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~-~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l 169 (287)
.++|++.++|+.|++.|++++++||++ ...+...+ +.+++..+ .+..||+|+.|..+++.+++++++++
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~-~~~gl~~~---------~~~~KP~p~~~~~~l~~~~~~~~~~l 112 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVE-KALGIPVL---------PHAVKPPGCAFRRAHPEMGLTSEQVA 112 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHH-HHcCCEEE---------cCCCCCChHHHHHHHHHcCCCHHHEE
Confidence 457899999999999999999999998 56666555 66665322 13479999999999999999999999
Q ss_pred EEeCCH-hhHHHHHHcCCeEEEECCCCCcc
Q 023109 170 VIEDSV-IGVVAGKAAGMEVVAVPSLPKQT 198 (287)
Q Consensus 170 ~iGDs~-~Dv~~a~~aG~~~i~v~~~~~~~ 198 (287)
||||+. .|+.+|+++|+.++++..+....
T Consensus 113 ~IGDs~~~Di~aA~~aGi~~i~v~~g~~~~ 142 (170)
T TIGR01668 113 VVGDRLFTDVMGGNRNGSYTILVEPLVHPD 142 (170)
T ss_pred EECCcchHHHHHHHHcCCeEEEEccCcCCc
Confidence 999998 79999999999999998865443
No 74
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.69 E-value=3.3e-17 Score=136.63 Aligned_cols=123 Identities=20% Similarity=0.196 Sum_probs=100.5
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcC---CCCCCHHHHHHHHHHcCCCCCcEE
Q 023109 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR---TGKPSPDIFLEAAKRLNMEPSSSL 169 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~---~~kp~~~~~~~~~~~l~~~~~~~l 169 (287)
++++.+.++.+++.+++++++||.+........ ...|+..+|+.+.++.... .+||+|..|..++++++++|++++
T Consensus 122 y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~-~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~ 200 (257)
T TIGR01458 122 YQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDG-LALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAV 200 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCC-CCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEE
Confidence 467888899999889999999999887765555 5667878888776554433 379999999999999999999999
Q ss_pred EEeCCH-hhHHHHHHcCCeEEEECCCCCc-c---ccccCCcEEeCCccCcCc
Q 023109 170 VIEDSV-IGVVAGKAAGMEVVAVPSLPKQ-T---HRYTAADEVINSLLDLRP 216 (287)
Q Consensus 170 ~iGDs~-~Dv~~a~~aG~~~i~v~~~~~~-~---~~~~~a~~v~~~l~el~~ 216 (287)
||||+. .|+.+|+++|+.++++.++... . .....++++++++.++..
T Consensus 201 ~vGD~~~~Di~~a~~~G~~~i~v~~G~~~~~~~~~~~~~pd~~~~sl~el~~ 252 (257)
T TIGR01458 201 MIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEKINVPPDLTCDSLPHAVD 252 (257)
T ss_pred EECCCcHHHHHHHHHcCCeEEEECCCCCChHHhcccCCCCCEEECCHHHHHH
Confidence 999997 8999999999999999887422 2 124567999999988754
No 75
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.68 E-value=2.1e-15 Score=119.00 Aligned_cols=96 Identities=21% Similarity=0.227 Sum_probs=78.4
Q ss_pred ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccC------------CcCCCCCCHHHHH
Q 023109 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD------------EVRTGKPSPDIFL 155 (287)
Q Consensus 88 ~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~------------~~~~~kp~~~~~~ 155 (287)
..+++.||+.++++.++++|++++++|++....++..+ +++|+...|...+..+ ....+..|+..++
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~-~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~ 148 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVA-EKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLK 148 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHH
Confidence 35678999999999999999999999999999999988 8888877665443332 1223445667788
Q ss_pred HHHHHcCCCCCcEEEEeCCHhhHHHHHHc
Q 023109 156 EAAKRLNMEPSSSLVIEDSVIGVVAGKAA 184 (287)
Q Consensus 156 ~~~~~l~~~~~~~l~iGDs~~Dv~~a~~a 184 (287)
+.++..++++++++|||||.+|+++++.+
T Consensus 149 ~~~~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 149 ELLEESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHHHHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 88888899999999999999999999864
No 76
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.68 E-value=6.7e-16 Score=132.59 Aligned_cols=102 Identities=18% Similarity=0.243 Sum_probs=87.4
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCC---------------ChHHHHHHHHhhcCCccccceee-c----cCCcCCCC
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNS---------------HRATIESKISYQHGWNESFSVIV-G----SDEVRTGK 148 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~---------------~~~~~~~~l~~~~gl~~~fd~i~-~----~~~~~~~k 148 (287)
...++||+.++|++|+++|++++|+||. ....+...+ +.+++. |+.++ + ++++...|
T Consensus 28 ~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL-~~~gl~--fd~i~i~~~~~sd~~~~rK 104 (354)
T PRK05446 28 KLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIF-ESQGIK--FDEVLICPHFPEDNCSCRK 104 (354)
T ss_pred cceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHH-HHcCCc--eeeEEEeCCcCcccCCCCC
Confidence 3678999999999999999999999995 234455566 777773 76654 3 35667899
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECC
Q 023109 149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 149 p~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
|+|+.+..+++.++++|++++||||+.+|+.+|+++|+++++++.
T Consensus 105 P~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~ 149 (354)
T PRK05446 105 PKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYAR 149 (354)
T ss_pred CCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEEC
Confidence 999999999999999999999999999999999999999999976
No 77
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.67 E-value=1.6e-16 Score=118.29 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=77.4
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCC-ChHHHHHHHHhhcC-------CccccceeeccCCcCCCCCCHHHHHHHHHHcC
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNS-HRATIESKISYQHG-------WNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~-~~~~~~~~l~~~~g-------l~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~ 162 (287)
+++||+.++|+.++++|++++++|++ ....+...+ ++.+ +..+|+.++++++ +|+|+.|.++++++|
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l-~~~~~~~~i~~l~~~f~~~~~~~~----~pkp~~~~~a~~~lg 103 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELL-KIFEDFGIIFPLAEYFDPLTIGYW----LPKSPRLVEIALKLN 103 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHH-HhccccccchhhHhhhhhhhhcCC----CcHHHHHHHHHHHhc
Confidence 57889999999999999999999999 787777777 7777 7888998887753 588999999999999
Q ss_pred --CCCCcEEEEeCCHhhHHHHHH
Q 023109 163 --MEPSSSLVIEDSVIGVVAGKA 183 (287)
Q Consensus 163 --~~~~~~l~iGDs~~Dv~~a~~ 183 (287)
+.|++|+||||+..|+...+.
T Consensus 104 ~~~~p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 104 GVLKPKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred CCCCcceEEEECCCHhHHHHHHh
Confidence 999999999999999876653
No 78
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.66 E-value=4.3e-16 Score=126.69 Aligned_cols=90 Identities=32% Similarity=0.468 Sum_probs=79.1
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEE
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l 169 (287)
.+++|++.+++++|++.|++++++|+.+...+.... +.+|+ ++.++.+... +||.+..+.++++.++.++++|+
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~-~~lgi---~~~~v~a~~~--~kP~~k~~~~~i~~l~~~~~~v~ 199 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIA-KQLGI---FDSIVFARVI--GKPEPKIFLRIIKELQVKPGEVA 199 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHH-HHTTS---CSEEEEESHE--TTTHHHHHHHHHHHHTCTGGGEE
T ss_pred CcchhhhhhhhhhhhccCcceeeeeccccccccccc-ccccc---cccccccccc--ccccchhHHHHHHHHhcCCCEEE
Confidence 478999999999999999999999999999999888 88898 4433333322 78999999999999999999999
Q ss_pred EEeCCHhhHHHHHHcC
Q 023109 170 VIEDSVIGVVAGKAAG 185 (287)
Q Consensus 170 ~iGDs~~Dv~~a~~aG 185 (287)
||||+.||+.++++||
T Consensus 200 ~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 200 MVGDGVNDAPALKAAG 215 (215)
T ss_dssp EEESSGGHHHHHHHSS
T ss_pred EEccCHHHHHHHHhCc
Confidence 9999999999999987
No 79
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.65 E-value=1.6e-15 Score=129.89 Aligned_cols=105 Identities=17% Similarity=0.112 Sum_probs=95.5
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcc-ccceeeccC-------CcCCCCCCHHHHHHHHHH
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFSVIVGSD-------EVRTGKPSPDIFLEAAKR 160 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~-~fd~i~~~~-------~~~~~kp~~~~~~~~~~~ 160 (287)
...++|++.++++.++++|++++++|+.+....+..+ +++++.+ +|+.+++.+ +....||+|+.+.++++.
T Consensus 185 ~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l-~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~ 263 (300)
T PHA02530 185 EDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTV-EWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWE 263 (300)
T ss_pred cCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHH-HHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHH
Confidence 4578999999999999999999999999999988888 8888886 899999887 455789999999999999
Q ss_pred cCC-CCCcEEEEeCCHhhHHHHHHcCCeEEEECCC
Q 023109 161 LNM-EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (287)
Q Consensus 161 l~~-~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~ 194 (287)
++. ++++|+||||+.+|+.+|+++|+.++++..|
T Consensus 264 ~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~~g 298 (300)
T PHA02530 264 KIAPKYDVLLAVDDRDQVVDMWRRIGLECWQVAPG 298 (300)
T ss_pred HhccCceEEEEEcCcHHHHHHHHHhCCeEEEecCC
Confidence 988 6799999999999999999999999999764
No 80
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.64 E-value=4.6e-15 Score=120.86 Aligned_cols=99 Identities=15% Similarity=0.134 Sum_probs=79.4
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCC----hHHHHHHHHhhcCC--ccccceeeccCCcCCCCCCHHHHHHHHHHcC
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSH----RATIESKISYQHGW--NESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~----~~~~~~~l~~~~gl--~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~ 162 (287)
...+.||+.++|+.++++|++++++||++ ...++..+ +++|+ .++|+.+++++.. .|+++. ..++.++
T Consensus 112 ~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Ll-k~~gip~~~~f~vil~gd~~--~K~~K~---~~l~~~~ 185 (237)
T PRK11009 112 FSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLA-DDFHIPADNMNPVIFAGDKP--GQYTKT---QWLKKKN 185 (237)
T ss_pred cCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHH-HHcCCCcccceeEEEcCCCC--CCCCHH---HHHHhcC
Confidence 46788999999999999999999999964 34555555 77899 7889988887753 556543 3455555
Q ss_pred CCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCc
Q 023109 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ 197 (287)
Q Consensus 163 ~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~ 197 (287)
+ ++||||+.+|+.+|++||+.++.+..+...
T Consensus 186 i----~I~IGDs~~Di~aA~~AGi~~I~v~~G~~~ 216 (237)
T PRK11009 186 I----RIFYGDSDNDITAAREAGARGIRILRAANS 216 (237)
T ss_pred C----eEEEcCCHHHHHHHHHcCCcEEEEecCCCC
Confidence 4 899999999999999999999999886543
No 81
>PRK10444 UMP phosphatase; Provisional
Probab=99.64 E-value=3.5e-16 Score=129.33 Aligned_cols=77 Identities=25% Similarity=0.360 Sum_probs=64.7
Q ss_pred eeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCH-hhHHHHHHcCCeEEEECCCCCcccc----ccCCcEEeCCcc
Q 023109 138 IVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVINSLL 212 (287)
Q Consensus 138 i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~-~Dv~~a~~aG~~~i~v~~~~~~~~~----~~~a~~v~~~l~ 212 (287)
+.+.+....+||+|+.+..+++.+++++++|+||||+. .|+.+|+++|+.++++.+|....+. ...++++++++.
T Consensus 164 ~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~~~~~pd~~~~sl~ 243 (248)
T PRK10444 164 ISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFRPSWIYPSVA 243 (248)
T ss_pred HhCCCccccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhcCCCCCCEEECCHH
Confidence 33444555689999999999999999999999999997 8999999999999999987654333 246899999998
Q ss_pred Cc
Q 023109 213 DL 214 (287)
Q Consensus 213 el 214 (287)
++
T Consensus 244 el 245 (248)
T PRK10444 244 DI 245 (248)
T ss_pred Hh
Confidence 76
No 82
>PRK11590 hypothetical protein; Provisional
Probab=99.63 E-value=3.1e-14 Score=115.51 Aligned_cols=181 Identities=13% Similarity=0.094 Sum_probs=109.5
Q ss_pred CccEEEEecCCcccccHHHHHHHHHHHH-HHcCCCCCH-HHHHHHhCCCHHHHHHH-------HHHHhCCCCCHHHHHHH
Q 023109 8 LMSCVILDLDGTLLNTDGMFSEVLKTFL-VKYGKEWDG-REKHKIVGKTPLEEAAI-------IVEDYGLPCAKHEFVNE 78 (287)
Q Consensus 8 ~~k~iifDlDGTL~d~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 78 (287)
..|+++||+||||++.+ ....+..++ ++++..... .......|.+....... ++.......+.+++ +.
T Consensus 5 ~~k~~iFD~DGTL~~~d--~~~~~~~~~~~~~g~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~ 81 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD--MFGSFLRYLLRRQPLNLLLVLPLLPVIGLGLLVKGRAARWPMSLLLWGCTFGHSEARL-QA 81 (211)
T ss_pred cceEEEEecCCCCcccc--hHHHHHHHHHHhcchhhHHHhHHHHHhccCcccchhhhhhhHHHHHHHHHcCCCHHHH-HH
Confidence 45799999999999554 333444444 777755322 44445555544332211 11111111123333 22
Q ss_pred HHHHHHhhhc-cCCCCCcHHHHH-HHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccC--------CcCCCC
Q 023109 79 VYSMFSDHLC-KVKALPGANRLI-KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD--------EVRTGK 148 (287)
Q Consensus 79 ~~~~~~~~~~-~~~~~~g~~~~l-~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~--------~~~~~k 148 (287)
+.+.+.+.+. ...++||+.+.| +.+++.|++++++|+++...++..+ ..+|+.. .+.+++++ -.+...
T Consensus 82 ~~~~f~~~~~~~~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il-~~l~~~~-~~~~i~t~l~~~~tg~~~g~~c 159 (211)
T PRK11590 82 LEADFVRWFRDNVTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVY-FDTPWLP-RVNLIASQMQRRYGGWVLTLRC 159 (211)
T ss_pred HHHHHHHHHHHhCcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHH-HHccccc-cCceEEEEEEEEEccEECCccC
Confidence 3333333332 256799999999 5788899999999999999999888 7777522 23444432 111111
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECC
Q 023109 149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 149 p~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
-..+-...+.+.++.+.+.+.+.|||.+|+++...+|-+.++.+.
T Consensus 160 ~g~~K~~~l~~~~~~~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~ 204 (211)
T PRK11590 160 LGHEKVAQLERKIGTPLRLYSGYSDSKQDNPLLYFCQHRWRVTPR 204 (211)
T ss_pred CChHHHHHHHHHhCCCcceEEEecCCcccHHHHHhCCCCEEECcc
Confidence 111222334444566777888999999999999999988776655
No 83
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.62 E-value=6.1e-15 Score=110.05 Aligned_cols=92 Identities=25% Similarity=0.418 Sum_probs=82.1
Q ss_pred CCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 023109 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI 171 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~i 171 (287)
..|.+.+.+.++++.|++++++||++.+.+.... +++|+ +.+. ...||.+..|+++++.+++++++|+||
T Consensus 47 ~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~-~~l~v----~fi~-----~A~KP~~~~fr~Al~~m~l~~~~vvmV 116 (175)
T COG2179 47 ATPELRAWLAELKEAGIKVVVVSNNKESRVARAA-EKLGV----PFIY-----RAKKPFGRAFRRALKEMNLPPEEVVMV 116 (175)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhh-hhcCC----ceee-----cccCccHHHHHHHHHHcCCChhHEEEE
Confidence 3456678899999999999999999999998888 88776 4444 458999999999999999999999999
Q ss_pred eCCH-hhHHHHHHcCCeEEEECC
Q 023109 172 EDSV-IGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 172 GDs~-~Dv~~a~~aG~~~i~v~~ 193 (287)
||.. .|+.++..+|+.|+.|..
T Consensus 117 GDqL~TDVlggnr~G~~tIlV~P 139 (175)
T COG2179 117 GDQLFTDVLGGNRAGMRTILVEP 139 (175)
T ss_pred cchhhhhhhcccccCcEEEEEEE
Confidence 9999 899999999999999976
No 84
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.60 E-value=2.4e-15 Score=119.05 Aligned_cols=98 Identities=18% Similarity=0.254 Sum_probs=80.4
Q ss_pred HHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhH
Q 023109 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178 (287)
Q Consensus 99 ~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv 178 (287)
.++.++++|++++++|+.+...+...+ +.+|+..+|+ ..+++++.+.++++.+|+.+++++||||+.+|+
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l-~~lgl~~~f~---------g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~ 125 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRM-TTLGITHLYQ---------GQSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDW 125 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHH-HHcCCceeec---------CCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHH
Confidence 566677899999999999999999888 8888876664 135678999999999999999999999999999
Q ss_pred HHHHHcCCeEEEECCCCCccccccCCcEEeC
Q 023109 179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVIN 209 (287)
Q Consensus 179 ~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~ 209 (287)
.+++++|+.++ +.. ..+.....++++++
T Consensus 126 ~~a~~aG~~~~-v~~--~~~~~~~~a~~v~~ 153 (183)
T PRK09484 126 PVMEKVGLSVA-VAD--AHPLLLPRADYVTR 153 (183)
T ss_pred HHHHHCCCeEe-cCC--hhHHHHHhCCEEec
Confidence 99999999855 332 22334566788886
No 85
>PLN02645 phosphoglycolate phosphatase
Probab=99.59 E-value=9.5e-16 Score=131.39 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=85.8
Q ss_pred HHHHHCCCCEEEEeCCChHH-HHHHHHhhcCCccccceeeccCCcC---CCCCCHHHHHHHHHHcCCCCCcEEEEeCCH-
Q 023109 101 KHLSCHGVPMALASNSHRAT-IESKISYQHGWNESFSVIVGSDEVR---TGKPSPDIFLEAAKRLNMEPSSSLVIEDSV- 175 (287)
Q Consensus 101 ~~l~~~g~~v~l~T~~~~~~-~~~~l~~~~gl~~~fd~i~~~~~~~---~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~- 175 (287)
..++.++-...++||.+... ....+ ...|...+|+.+.++.... .+||+|..|..+++.+++++++++||||++
T Consensus 180 ~~l~~~~g~~~i~tn~d~~~~~~~~~-~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~ 258 (311)
T PLN02645 180 LCIRENPGCLFIATNRDAVTHLTDAQ-EWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVGDRLD 258 (311)
T ss_pred HHHhcCCCCEEEEeCCCCCCCCCCCC-CccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEcCCcH
Confidence 34433233688888887643 22223 4456666777776655433 369999999999999999999999999998
Q ss_pred hhHHHHHHcCCeEEEECCCCCcccc------ccCCcEEeCCccCcCc
Q 023109 176 IGVVAGKAAGMEVVAVPSLPKQTHR------YTAADEVINSLLDLRP 216 (287)
Q Consensus 176 ~Dv~~a~~aG~~~i~v~~~~~~~~~------~~~a~~v~~~l~el~~ 216 (287)
.|+.+|+++|+.++++.+|....+. ...++++++++.++..
T Consensus 259 ~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~l~~ 305 (311)
T PLN02645 259 TDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISDFLT 305 (311)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHHHHH
Confidence 8999999999999999887544322 1467999999988754
No 86
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.58 E-value=3.5e-15 Score=123.95 Aligned_cols=119 Identities=20% Similarity=0.245 Sum_probs=82.4
Q ss_pred CcHHHHHHHHHHCCCCEEEEeCCChHHHHH--HHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 023109 94 PGANRLIKHLSCHGVPMALASNSHRATIES--KISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI 171 (287)
Q Consensus 94 ~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~--~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~i 171 (287)
+.....+..++ +|.+ .++||.+...... .+.....+...++...+.+....+||+|..|+.+++.+++++++++||
T Consensus 124 ~~l~~a~~~l~-~g~~-~i~tN~D~~~~~~~~~~~~~G~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~V 201 (249)
T TIGR01457 124 EKFATATLAIR-KGAH-FIGTNGDLAIPTERGLLPGNGSLITVLEVATGVKPVYIGKPNAIIMEKAVEHLGTEREETLMV 201 (249)
T ss_pred HHHHHHHHHHH-CCCe-EEEECCCCCCCCCCCCCCCcHHHHHHHHHHhCCCccccCCChHHHHHHHHHHcCCCcccEEEE
Confidence 34444455553 4555 7777776654311 000111122234555566667778999999999999999999999999
Q ss_pred eCCH-hhHHHHHHcCCeEEEECCCCCcccc--c--cCCcEEeCCccCc
Q 023109 172 EDSV-IGVVAGKAAGMEVVAVPSLPKQTHR--Y--TAADEVINSLLDL 214 (287)
Q Consensus 172 GDs~-~Dv~~a~~aG~~~i~v~~~~~~~~~--~--~~a~~v~~~l~el 214 (287)
||++ .|+.+|+++|+.++++.++...... . ..++++++++.++
T Consensus 202 GD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~~~~~pd~~v~~l~~~ 249 (249)
T TIGR01457 202 GDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAGLPIAPTHVVSSLAEW 249 (249)
T ss_pred CCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhcCCCCCCEEeCChhhC
Confidence 9997 8999999999999999987644332 1 3578888887653
No 87
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=99.54 E-value=5.3e-13 Score=100.67 Aligned_cols=121 Identities=16% Similarity=0.119 Sum_probs=93.7
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhc---CCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCC
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH---GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~---gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~ 165 (287)
+.+++|++.+.+++.++.|.++++.|.++....+-.+ .+. .+..+|++.+.. ..-.|.....|.++++..|++|
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~F-ghs~agdL~~lfsGyfDt--tiG~KrE~~SY~kIa~~iGl~p 177 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFF-GHSDAGDLNSLFSGYFDT--TIGKKRESQSYAKIAGDIGLPP 177 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhh-cccccccHHhhhcceeec--cccccccchhHHHHHHhcCCCc
Confidence 5789999999999999999999999999877655444 332 344556655533 2235666788999999999999
Q ss_pred CcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCcc
Q 023109 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLL 212 (287)
Q Consensus 166 ~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~ 212 (287)
.+++++.|+++.+.+|+.+|+++..+.+....+-.......++.|+.
T Consensus 178 ~eilFLSDn~~EL~AA~~vGl~t~l~~R~g~~P~~d~~~~~~~~sf~ 224 (229)
T COG4229 178 AEILFLSDNPEELKAAAGVGLATGLAVRPGNAPVPDGQGFLVYKSFE 224 (229)
T ss_pred hheEEecCCHHHHHHHHhcchheeeeecCCCCCCCCCcCceeeechh
Confidence 99999999999999999999999999885544444444455555554
No 88
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.52 E-value=7e-14 Score=118.02 Aligned_cols=117 Identities=14% Similarity=0.054 Sum_probs=77.7
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCCCh-----HHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCc
Q 023109 93 LPGANRLIKHLSCHGVPMALASNSHR-----ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~~~-----~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~ 167 (287)
.+++.++++.++..+..+.++++.+. ...+... +.+++...+......+....+..++..++++++.+|+++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e 217 (272)
T PRK10530 139 FTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVE-HELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKN 217 (272)
T ss_pred eEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHh-hhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHH
Confidence 45666777777666666666665432 2222222 44443211100001123344556788999999999999999
Q ss_pred EEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccC
Q 023109 168 SLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (287)
Q Consensus 168 ~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~e 213 (287)
+++|||+.||++|++.+|+.+++.+. .+..+..|++++++..+
T Consensus 218 ~i~~GD~~NDi~m~~~ag~~vamgna---~~~lk~~Ad~v~~~n~~ 260 (272)
T PRK10530 218 VVAFGDNFNDISMLEAAGLGVAMGNA---DDAVKARADLVIGDNTT 260 (272)
T ss_pred eEEeCCChhhHHHHHhcCceEEecCc---hHHHHHhCCEEEecCCC
Confidence 99999999999999999987666543 45567788999877654
No 89
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.50 E-value=1.2e-12 Score=106.13 Aligned_cols=169 Identities=17% Similarity=0.156 Sum_probs=112.9
Q ss_pred EEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHhC-CCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhhhc
Q 023109 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVG-KTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSDHLC 88 (287)
Q Consensus 11 ~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 88 (287)
+++||+|+||++.+... .+++.++............. ....+.+..++..++.. .+.+++ .+...
T Consensus 2 LvvfDFD~TIvd~dsd~-----~v~~~l~~~~~~~~l~~~~~~~~wt~~m~~vl~~L~~~gvt~~~I--------~~~l~ 68 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSDD-----WVIELLPPEELPEELRESYPKGGWTEYMDRVLQLLHEQGVTPEDI--------RDALR 68 (234)
T ss_pred EEEEeCCCCccCCccHH-----HHHHhcCCcccHHHHHHhccccchHHHHHHHHHHHHHcCCCHHHH--------HHHHH
Confidence 68999999999875532 22334444433233322222 22344444554444211 223333 33336
Q ss_pred cCCCCCcHHHHHHHH--HHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCC--------------------cCC
Q 023109 89 KVKALPGANRLIKHL--SCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE--------------------VRT 146 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l--~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~--------------------~~~ 146 (287)
.+|+.||+.++++.+ ++.|+.++|+|++...+++.++ ++.|+...|+.|++... ++.
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL-~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~ 147 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETIL-EHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPP 147 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHH-HhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCC
Confidence 789999999999999 4579999999999999999999 89999999988876410 111
Q ss_pred CCCCHHHHHHHHHHc---CCCCCcEEEEeCCHhhHHHHHHcCCeEEEECC
Q 023109 147 GKPSPDIFLEAAKRL---NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 147 ~kp~~~~~~~~~~~l---~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
.--|...+++.++.. |...++++||||+.||+..+.+.+-.-++.++
T Consensus 148 NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R 197 (234)
T PF06888_consen 148 NMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDVVFPR 197 (234)
T ss_pred ccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCEEecC
Confidence 123556666666553 66778999999999999999987765455544
No 90
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.49 E-value=3.8e-14 Score=108.30 Aligned_cols=97 Identities=15% Similarity=0.075 Sum_probs=86.7
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcc-ccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCc
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~-~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~ 167 (287)
.+.++||+.++|+.|+ ++++++|+|+++...++..+ +++++.. +|+.+++++++...||+ |.++++.++.+|++
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il-~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~~ 117 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVL-DLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLLGRDLSN 117 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHH-HHhCcCCCEeeeEEECccccccCCe---EeecHHHcCCChhc
Confidence 4678999999999998 56999999999999999999 8888864 46999999999888886 89999999999999
Q ss_pred EEEEeCCHhhHHHHHHcCCeEEE
Q 023109 168 SLVIEDSVIGVVAGKAAGMEVVA 190 (287)
Q Consensus 168 ~l~iGDs~~Dv~~a~~aG~~~i~ 190 (287)
|++|||+++|+.++.++|+.+--
T Consensus 118 ~i~i~Ds~~~~~aa~~ngI~i~~ 140 (148)
T smart00577 118 VIIIDDSPDSWPFHPENLIPIKP 140 (148)
T ss_pred EEEEECCHHHhhcCccCEEEecC
Confidence 99999999999999999965543
No 91
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.49 E-value=6e-13 Score=102.89 Aligned_cols=123 Identities=24% Similarity=0.302 Sum_probs=92.1
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCCh---------------HHHHHHHHhhcCCccccceeecc-----CCcCCCCC
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVGS-----DEVRTGKP 149 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~---------------~~~~~~l~~~~gl~~~fd~i~~~-----~~~~~~kp 149 (287)
..+.|++.+.+..+++.|++++++||.+- ......+ ...|. .||.++.+ +.+.+.||
T Consensus 30 ~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l-~~~gv--~id~i~~Cph~p~~~c~cRKP 106 (181)
T COG0241 30 FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKIL-ASQGV--KIDGILYCPHHPEDNCDCRKP 106 (181)
T ss_pred hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHH-HHcCC--ccceEEECCCCCCCCCcccCC
Confidence 46788999999999999999999999531 1223344 33344 47777654 23678999
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCcccc-ccCCcEEeCCccCcC
Q 023109 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEVINSLLDLR 215 (287)
Q Consensus 150 ~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~-~~~a~~v~~~l~el~ 215 (287)
++..+..+++.+++++++.++|||+..|+++|.++|++.+.+.++...... ....+++..++.++.
T Consensus 107 ~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (181)
T COG0241 107 KPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLTGIGVTTDGAGRAKWVFDSLAEFA 173 (181)
T ss_pred ChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEcCcccccccccccccccccHHHHH
Confidence 999999999999999999999999999999999999998877774332222 223455555555543
No 92
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.47 E-value=9e-14 Score=114.70 Aligned_cols=73 Identities=27% Similarity=0.441 Sum_probs=63.4
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcEEEEeCCH-hhHHHHHHcCCeEEEECCCCCcccc----ccCCcEEeCCccCcCcc
Q 023109 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVINSLLDLRPE 217 (287)
Q Consensus 145 ~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~-~Dv~~a~~aG~~~i~v~~~~~~~~~----~~~a~~v~~~l~el~~~ 217 (287)
-.+||.+.+|+.+++.++..++++++|||+. .||.+++++|+.+++|.+|....+. ...++++.+|+.++...
T Consensus 187 ~~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~~~~~~~~p~~v~~sl~~~~~~ 264 (269)
T COG0647 187 VIGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLDRAEVKPTYVVDSLAELITA 264 (269)
T ss_pred ccCCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhhhhhhccCCcchHhhHHHHHhh
Confidence 5699999999999999999999999999999 7999999999999999998664433 35678888888887544
No 93
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.46 E-value=5.6e-12 Score=101.83 Aligned_cols=103 Identities=11% Similarity=0.022 Sum_probs=70.9
Q ss_pred cCCCCCcHHHHHH-HHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccC----CcCC----CCCCHHHHHHHHH
Q 023109 89 KVKALPGANRLIK-HLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD----EVRT----GKPSPDIFLEAAK 159 (287)
Q Consensus 89 ~~~~~~g~~~~l~-~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~----~~~~----~kp~~~~~~~~~~ 159 (287)
...++|++.+.|+ +++++|++++|+|+++...++... +..++... +.+++++ +.+. ..-..+-...+.+
T Consensus 92 ~~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia-~~~~~~~~-~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~ 169 (210)
T TIGR01545 92 KVTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVY-FDSNFIHR-LNLIASQIERGNGGWVLPLRCLGHEKVAQLEQ 169 (210)
T ss_pred hCCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHH-Hhcccccc-CcEEEEEeEEeCCceEcCccCCChHHHHHHHH
Confidence 3468999999996 788899999999999999999888 66444222 3333432 1111 0001122233334
Q ss_pred HcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECC
Q 023109 160 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 160 ~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
.++.+.+.+.+.|||.+|+++...+|-+.++.+.
T Consensus 170 ~~~~~~~~~~aYsDS~~D~pmL~~a~~~~~Vnp~ 203 (210)
T TIGR01545 170 KIGSPLKLYSGYSDSKQDNPLLAFCEHRWRVSKR 203 (210)
T ss_pred HhCCChhheEEecCCcccHHHHHhCCCcEEECcc
Confidence 4565666888999999999999999988776655
No 94
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.45 E-value=9.5e-14 Score=114.29 Aligned_cols=98 Identities=16% Similarity=0.155 Sum_probs=70.4
Q ss_pred EEEEeCCChHHHHHHHHhhcCCccccceeec---cCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCC
Q 023109 110 MALASNSHRATIESKISYQHGWNESFSVIVG---SDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 186 (287)
Q Consensus 110 v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~---~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~ 186 (287)
+.+.++.....+...+ +..+. .+..+.+ .+-...+.+|+..+..+++.+|++++++++|||+.||++|++.+|.
T Consensus 118 ~~~~~~~~~~~~~~~l-~~~~~--~~~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~ 194 (230)
T PRK01158 118 VALRRTVPVEEVRELL-EELGL--DLEIVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGF 194 (230)
T ss_pred eeecccccHHHHHHHH-HHcCC--cEEEEecceEEEEeeCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCc
Confidence 3344444555566666 44443 1222221 2334566778899999999999999999999999999999999999
Q ss_pred eEEEECCCCCccccccCCcEEeCCccC
Q 023109 187 EVVAVPSLPKQTHRYTAADEVINSLLD 213 (287)
Q Consensus 187 ~~i~v~~~~~~~~~~~~a~~v~~~l~e 213 (287)
.+++.+. .+..+..+++++++..+
T Consensus 195 ~vam~Na---~~~vk~~a~~v~~~n~~ 218 (230)
T PRK01158 195 GVAVANA---DEELKEAADYVTEKSYG 218 (230)
T ss_pred eEEecCc---cHHHHHhcceEecCCCc
Confidence 8887776 55667788888876543
No 95
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.44 E-value=2.6e-13 Score=116.90 Aligned_cols=90 Identities=22% Similarity=0.152 Sum_probs=81.8
Q ss_pred CCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhh----cCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCc
Q 023109 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ----HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~----~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~ 167 (287)
+++|+.++|+.|+++|+.++++|+++...+...+ ++ +++.++|+.+.++ .||+|+.+.++++.+|+.+++
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l-~~~~~~~~~~~~f~~~~~~-----~~pk~~~i~~~~~~l~i~~~~ 105 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVF-ERRKDFILQAEDFDARSIN-----WGPKSESLRKIAKKLNLGTDS 105 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHH-HhCccccCcHHHeeEEEEe-----cCchHHHHHHHHHHhCCCcCc
Confidence 4779999999999999999999999999999999 77 7888889887654 589999999999999999999
Q ss_pred EEEEeCCHhhHHHHHHcCCe
Q 023109 168 SLVIEDSVIGVVAGKAAGME 187 (287)
Q Consensus 168 ~l~iGDs~~Dv~~a~~aG~~ 187 (287)
++||||++.|+.++++++-.
T Consensus 106 ~vfidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 106 FLFIDDNPAERANVKITLPV 125 (320)
T ss_pred EEEECCCHHHHHHHHHHCCC
Confidence 99999999999999997753
No 96
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.43 E-value=7.5e-13 Score=119.33 Aligned_cols=92 Identities=22% Similarity=0.317 Sum_probs=80.9
Q ss_pred CCCcHHHHHHHHHHCCCCEEEEeCCCh------------HHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHH
Q 023109 92 ALPGANRLIKHLSCHGVPMALASNSHR------------ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK 159 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~l~T~~~~------------~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~ 159 (287)
++||+.+.|+.|++.|++++|+||... ..+...+ +++|+. |+.+++.+.....||+|..+..+++
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL-~~lgip--fdviia~~~~~~RKP~pGm~~~a~~ 274 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIV-AKLGVP--FQVFIAIGAGFYRKPLTGMWDHLKE 274 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHH-HHcCCc--eEEEEeCCCCCCCCCCHHHHHHHHH
Confidence 579999999999999999999999766 3466677 778874 8988888888889999999999999
Q ss_pred HcC----CCCCcEEEEeCCHhhHHHHHHcCC
Q 023109 160 RLN----MEPSSSLVIEDSVIGVVAGKAAGM 186 (287)
Q Consensus 160 ~l~----~~~~~~l~iGDs~~Dv~~a~~aG~ 186 (287)
.++ +++++++||||+..|+.+++++|.
T Consensus 275 ~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~ 305 (526)
T TIGR01663 275 EANDGTEIQEDDCFFVGDAAGRPANGKAAGK 305 (526)
T ss_pred hcCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence 985 899999999999999988888774
No 97
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.41 E-value=2.9e-11 Score=103.35 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=84.5
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhc-C-------CccccceeeccCCc-----------------
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH-G-------WNESFSVIVGSDEV----------------- 144 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~-g-------l~~~fd~i~~~~~~----------------- 144 (287)
+...||+.++|+.++++|++++|+||++...++..+ +++ | +.++||.++++..-
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im-~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~~ 261 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGM-KYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVET 261 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCCC
Confidence 567999999999999999999999999999999999 664 6 88999998875321
Q ss_pred CCCCCC-------H-----HHHHHHHHHcCCCCCcEEEEeCCH-hhHHHHH-HcCCeEEEECC
Q 023109 145 RTGKPS-------P-----DIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGK-AAGMEVVAVPS 193 (287)
Q Consensus 145 ~~~kp~-------~-----~~~~~~~~~l~~~~~~~l~iGDs~-~Dv~~a~-~aG~~~i~v~~ 193 (287)
+..++. + .-.....+.+++.+++++||||+. .|+..++ .+|+.++++..
T Consensus 262 g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~p 324 (343)
T TIGR02244 262 GSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIP 324 (343)
T ss_pred CcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEch
Confidence 111111 1 224667788899999999999999 7999998 99999999876
No 98
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.40 E-value=3.6e-13 Score=110.42 Aligned_cols=100 Identities=18% Similarity=0.121 Sum_probs=71.4
Q ss_pred EEEEeCCChHHHHHHHHhhcCCcccc-ceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeE
Q 023109 110 MALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV 188 (287)
Q Consensus 110 v~l~T~~~~~~~~~~l~~~~gl~~~f-d~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~ 188 (287)
..+.+..+...+...+ +.++....+ ......+......+|+..+.++++.+|++++++++|||+.||++|++.+|..+
T Consensus 110 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~v 188 (225)
T TIGR01482 110 VKMRYGIDVDTVREII-KELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFGV 188 (225)
T ss_pred EEEeecCCHHHHHHHH-HhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCceE
Confidence 3444555555555555 555542110 00112233456778889999999999999999999999999999999999988
Q ss_pred EEECCCCCccccccCCcEEeCCccC
Q 023109 189 VAVPSLPKQTHRYTAADEVINSLLD 213 (287)
Q Consensus 189 i~v~~~~~~~~~~~~a~~v~~~l~e 213 (287)
++.+. .++.+..+++++++..+
T Consensus 189 am~Na---~~~~k~~A~~vt~~~~~ 210 (225)
T TIGR01482 189 AVANA---QPELKEWADYVTESPYG 210 (225)
T ss_pred EcCCh---hHHHHHhcCeecCCCCC
Confidence 88776 56677888888876543
No 99
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.40 E-value=1.1e-12 Score=88.02 Aligned_cols=69 Identities=32% Similarity=0.484 Sum_probs=61.9
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEeCC-HhhHHHHHHcCCeEEEECCCCCcccc----ccCCcEEeCCccCc
Q 023109 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDS-VIGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVINSLLDL 214 (287)
Q Consensus 146 ~~kp~~~~~~~~~~~l~~~~~~~l~iGDs-~~Dv~~a~~aG~~~i~v~~~~~~~~~----~~~a~~v~~~l~el 214 (287)
.+||+|..+..+++.++++++++++|||+ ..|+.+|+++|+.++++.++....+. ...++++++++.|+
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~l~e~ 75 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVDDLKEA 75 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEESSGGGH
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEECCHHhC
Confidence 48999999999999999999999999999 69999999999999999997665544 35889999999874
No 100
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.37 E-value=1.7e-11 Score=101.62 Aligned_cols=96 Identities=20% Similarity=0.266 Sum_probs=81.0
Q ss_pred ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcccccee------eccCCcCCCCCCH---------H
Q 023109 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVI------VGSDEVRTGKPSP---------D 152 (287)
Q Consensus 88 ~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i------~~~~~~~~~kp~~---------~ 152 (287)
..+++.||+.++++.|+++|++++|+|++....++..+ +.+|+...+..+ +..++.-.++|.| .
T Consensus 118 ~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL-~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~ 196 (277)
T TIGR01544 118 SDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVL-RQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHD 196 (277)
T ss_pred cCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHH-HHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHH
Confidence 36899999999999999999999999999999999999 878887666666 4344555567666 5
Q ss_pred HHHHHHHHcC--CCCCcEEEEeCCHhhHHHHHHc
Q 023109 153 IFLEAAKRLN--MEPSSSLVIEDSVIGVVAGKAA 184 (287)
Q Consensus 153 ~~~~~~~~l~--~~~~~~l~iGDs~~Dv~~a~~a 184 (287)
.+....+.++ .++++|+++|||.+|+.||...
T Consensus 197 v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~ 230 (277)
T TIGR01544 197 VALRNTEYFNQLKDRSNIILLGDSQGDLRMADGV 230 (277)
T ss_pred HHHHHHHHhCccCCcceEEEECcChhhhhHhcCC
Confidence 6667788888 8999999999999999998877
No 101
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.35 E-value=7.5e-12 Score=105.52 Aligned_cols=65 Identities=18% Similarity=0.118 Sum_probs=56.3
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccC
Q 023109 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (287)
Q Consensus 146 ~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~e 213 (287)
.+..|..+++.+++.+|++++++++|||+.||++|.+.+|..+++.++ .++.+..|++++++..+
T Consensus 193 ~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~NA---~~~vK~~A~~vt~~n~~ 257 (270)
T PRK10513 193 KRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGNA---IPSVKEVAQFVTKSNLE 257 (270)
T ss_pred CCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecCc---cHHHHHhcCeeccCCCc
Confidence 445667889999999999999999999999999999999998888876 67778889999877554
No 102
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.33 E-value=5.1e-12 Score=96.54 Aligned_cols=187 Identities=16% Similarity=0.149 Sum_probs=108.8
Q ss_pred CccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHH-HHHh-C-CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 023109 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HKIV-G-KTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS 84 (287)
Q Consensus 8 ~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (287)
..++|+||+|-|++..+.. .++.+..|..-...+. +..+ | .+..++++..+..+.. ......+...
T Consensus 15 ~~~aVcFDvDSTvi~eEgI-----delA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp------~~~qv~~~v~ 83 (227)
T KOG1615|consen 15 SADAVCFDVDSTVIQEEGI-----DELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQP------LQVQVEQFVI 83 (227)
T ss_pred hcCeEEEecCcchhHHhhH-----HHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhcc------cHHHHHHHHh
Confidence 4689999999999876432 2222233332211111 1122 1 1333444433333321 1112222222
Q ss_pred hhhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcc--cc--------ceeecc-CC---cCCCCCC
Q 023109 85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE--SF--------SVIVGS-DE---VRTGKPS 150 (287)
Q Consensus 85 ~~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~--~f--------d~i~~~-~~---~~~~kp~ 150 (287)
+ ....+.||+.+++..|+++|..++++|++.+..+..+. +.+|+.. .+ ++-+.+ +. ...+-.+
T Consensus 84 ~--~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va-~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggK 160 (227)
T KOG1615|consen 84 K--QKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVA-EQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGK 160 (227)
T ss_pred c--CCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHH-HHhCCcHhhhhhheeeeccCCcccccccCCccccCCcc
Confidence 1 36788999999999999999999999999999999888 8888864 22 111222 11 1223345
Q ss_pred HHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCc
Q 023109 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSL 211 (287)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l 211 (287)
++.+..+.+ +.+-+.++||||+.+|+++-.- |...+..+....++..+..+.+.+.++
T Consensus 161 a~~i~~lrk--~~~~~~~~mvGDGatDlea~~p-a~afi~~~g~~~r~~vk~nak~~~~~f 218 (227)
T KOG1615|consen 161 AEVIALLRK--NYNYKTIVMVGDGATDLEAMPP-ADAFIGFGGNVIREGVKANAKWYVTDF 218 (227)
T ss_pred HHHHHHHHh--CCChheeEEecCCccccccCCc-hhhhhccCCceEcHhhHhccHHHHHHH
Confidence 666666666 7788899999999999998666 333443333222333344444433333
No 103
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.32 E-value=4.2e-12 Score=104.72 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcE-EEEeCCH-hhHHHHHHcCCeEEEECC
Q 023109 145 RTGKPSPDIFLEAAKRLNMEPSSS-LVIEDSV-IGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 145 ~~~kp~~~~~~~~~~~l~~~~~~~-l~iGDs~-~Dv~~a~~aG~~~i~v~~ 193 (287)
..+||+|..|+.++++++.+++++ +||||+. .|+.+|+++|+.++++.+
T Consensus 185 ~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~ 235 (236)
T TIGR01460 185 VVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVLT 235 (236)
T ss_pred eecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEec
Confidence 367999999999999999998887 9999999 899999999999999865
No 104
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.30 E-value=2.5e-11 Score=98.82 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=71.0
Q ss_pred EEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEE
Q 023109 110 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 189 (287)
Q Consensus 110 v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i 189 (287)
+++.+......+...+ +..++...... ...+-...+..+...++.+++.+|++++++++|||+.||++|++.+|+.++
T Consensus 110 ~~~~~~~~~~~~~~~l-~~~~~~~~~~~-~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~va 187 (215)
T TIGR01487 110 VIMREGKDVDEVREII-KERGLNLVDSG-FAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFKVA 187 (215)
T ss_pred EEecCCccHHHHHHHH-HhCCeEEEecC-ceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCeEE
Confidence 3444555556666666 55555332211 111233456677889999999999999999999999999999999999888
Q ss_pred EECCCCCccccccCCcEEeCCcc
Q 023109 190 AVPSLPKQTHRYTAADEVINSLL 212 (287)
Q Consensus 190 ~v~~~~~~~~~~~~a~~v~~~l~ 212 (287)
+.+. .++.+..+++++++..
T Consensus 188 m~na---~~~~k~~A~~v~~~~~ 207 (215)
T TIGR01487 188 VANA---DDQLKEIADYVTSNPY 207 (215)
T ss_pred cCCc---cHHHHHhCCEEcCCCC
Confidence 8776 6667788888887544
No 105
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.28 E-value=1.3e-10 Score=100.17 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=58.2
Q ss_pred CCCCCCHHHHHHHHHHc--------CC-----CCCcEEEEeCCH-hhHHHHHHcCCeEEEECCCCCccc-c--ccCCcEE
Q 023109 145 RTGKPSPDIFLEAAKRL--------NM-----EPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTH-R--YTAADEV 207 (287)
Q Consensus 145 ~~~kp~~~~~~~~~~~l--------~~-----~~~~~l~iGDs~-~Dv~~a~~aG~~~i~v~~~~~~~~-~--~~~a~~v 207 (287)
..+||++..|+.+++.+ +. ++++++||||++ .|+.+|+++|+.+++|.+|..... . ...++++
T Consensus 230 ~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~~~~~~p~~v 309 (321)
T TIGR01456 230 TLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDDLKECKPTLI 309 (321)
T ss_pred EcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccCCCCCCCCCCCCEE
Confidence 45999999999988887 43 457999999999 899999999999999998733322 2 2357899
Q ss_pred eCCccCcCcc
Q 023109 208 INSLLDLRPE 217 (287)
Q Consensus 208 ~~~l~el~~~ 217 (287)
++++.|+...
T Consensus 310 v~~l~e~~~~ 319 (321)
T TIGR01456 310 VNDVFDAVTK 319 (321)
T ss_pred ECCHHHHHHH
Confidence 9999887543
No 106
>PRK10976 putative hydrolase; Provisional
Probab=99.26 E-value=3.9e-11 Score=100.98 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=55.6
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCc--EEeCCccC
Q 023109 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAAD--EVINSLLD 213 (287)
Q Consensus 145 ~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~--~v~~~l~e 213 (287)
..+-.|..+++.+++.+|++++++++|||+.||++|.+.+|..+++.+. .++.++.|+ +++++..+
T Consensus 186 ~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA---~~~vK~~A~~~~v~~~n~e 253 (266)
T PRK10976 186 AGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNA---HQRLKDLLPELEVIGSNAD 253 (266)
T ss_pred cCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCC---cHHHHHhCCCCeecccCch
Confidence 3456678999999999999999999999999999999999999888877 566677765 67766543
No 107
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.25 E-value=7e-12 Score=105.35 Aligned_cols=67 Identities=19% Similarity=0.123 Sum_probs=55.9
Q ss_pred cCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccC
Q 023109 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (287)
Q Consensus 144 ~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~e 213 (287)
...+..|..+++.+++.+|++++++++|||+.||++|.+.+|..+++.+. .+..+..++++..+..+
T Consensus 184 ~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~Na---~~~~k~~A~~vt~~n~~ 250 (264)
T COG0561 184 TPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGNA---DEELKELADYVTTSNDE 250 (264)
T ss_pred ecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeeccCC---CHHHHhhCCcccCCccc
Confidence 45677788899999999999999999999999999999999988888877 55666677766555543
No 108
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.24 E-value=2.7e-12 Score=94.76 Aligned_cols=97 Identities=21% Similarity=0.286 Sum_probs=78.0
Q ss_pred HHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhH
Q 023109 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178 (287)
Q Consensus 99 ~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv 178 (287)
-++.+.+.|++++|+|+.+...++..+ +.+|+...|-.+ +.+-..+.++++.+++.+++|.|+||..+|+
T Consensus 43 Gik~l~~~Gi~vAIITGr~s~ive~Ra-~~LGI~~~~qG~---------~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dl 112 (170)
T COG1778 43 GIKLLLKSGIKVAIITGRDSPIVEKRA-KDLGIKHLYQGI---------SDKLAAFEELLKKLNLDPEEVAYVGDDLVDL 112 (170)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHH-HHcCCceeeech---------HhHHHHHHHHHHHhCCCHHHhhhhcCccccH
Confidence 356677889999999999999999999 889986544432 2245789999999999999999999999999
Q ss_pred HHHHHcCCeEEEECCCCCccccccCCcEEe
Q 023109 179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVI 208 (287)
Q Consensus 179 ~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~ 208 (287)
++.+..|.+++..+. .+..+..++++.
T Consensus 113 pvm~~vGls~a~~dA---h~~v~~~a~~Vt 139 (170)
T COG1778 113 PVMEKVGLSVAVADA---HPLLKQRADYVT 139 (170)
T ss_pred HHHHHcCCccccccc---CHHHHHhhHhhh
Confidence 999999988776655 344455555554
No 109
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.24 E-value=1.5e-11 Score=94.78 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=72.5
Q ss_pred ccCCCCCcHHHHHHHHHHCCCCEEEEeCC-ChHHHHHHHHhhcCCc----------cccceeeccCCcCCCCCCHHHHHH
Q 023109 88 CKVKALPGANRLIKHLSCHGVPMALASNS-HRATIESKISYQHGWN----------ESFSVIVGSDEVRTGKPSPDIFLE 156 (287)
Q Consensus 88 ~~~~~~~g~~~~l~~l~~~g~~v~l~T~~-~~~~~~~~l~~~~gl~----------~~fd~i~~~~~~~~~kp~~~~~~~ 156 (287)
..+.++|++.+.|++|+++|++++++|-+ ....++..| +.+++. ++|+..-... ..+...|++
T Consensus 42 ~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L-~~l~i~~~~~~~~~~~~~F~~~eI~~-----gsK~~Hf~~ 115 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELL-KLLEIDDADGDGVPLIEYFDYLEIYP-----GSKTTHFRR 115 (169)
T ss_dssp -EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHH-HHTT-C----------CCECEEEESS-----S-HHHHHHH
T ss_pred CEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHH-HhcCCCccccccccchhhcchhheec-----CchHHHHHH
Confidence 36789999999999999999999999965 456778888 889998 7777643322 256789999
Q ss_pred HHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCC
Q 023109 157 AAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK 196 (287)
Q Consensus 157 ~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~ 196 (287)
+.+..|++.+++++|+|...++...+..|+.++.+..|-.
T Consensus 116 i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt 155 (169)
T PF12689_consen 116 IHRKTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLT 155 (169)
T ss_dssp HHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--
T ss_pred HHHhcCCChhHEEEecCchhcceeeEecCcEEEEeCCCCC
Confidence 9999999999999999999999999999999999988643
No 110
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.24 E-value=6.4e-11 Score=94.55 Aligned_cols=85 Identities=21% Similarity=0.383 Sum_probs=61.3
Q ss_pred CcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCC----------C---CCHHHHHHH---
Q 023109 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTG----------K---PSPDIFLEA--- 157 (287)
Q Consensus 94 ~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~----------k---p~~~~~~~~--- 157 (287)
+++.++++.++++|++++|+|++....++..+ +.+|+.... ++++...... . .|...++++
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~-~~~~i~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~ 168 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIA-ERLGIDDDN--VIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIR 168 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHH-HHTTSSEGG--EEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCCceE--EEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHH
Confidence 55669999999999999999999999999998 788875421 2222210000 0 244455555
Q ss_pred HHHcCCCCCcEEEEeCCHhhHHHHH
Q 023109 158 AKRLNMEPSSSLVIEDSVIGVVAGK 182 (287)
Q Consensus 158 ~~~l~~~~~~~l~iGDs~~Dv~~a~ 182 (287)
... +.....+++||||.+|+++++
T Consensus 169 ~~~-~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 169 DEE-DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHH-THTCCEEEEEESSGGGHHHHH
T ss_pred hhc-CCCCCeEEEEECCHHHHHHhC
Confidence 333 788899999999999999985
No 111
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.23 E-value=4.2e-10 Score=95.00 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHcCCCC-CcEEEEeCCHhhHHHHHHcCCeEEEECC
Q 023109 149 PSPDIFLEAAKRLNMEP-SSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 149 p~~~~~~~~~~~l~~~~-~~~l~iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
.+...++++++.+|+++ +++++|||+.||++|++.+|..+++.|.
T Consensus 190 ~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~~~ag~~vam~NA 235 (273)
T PRK00192 190 DKGKAVRWLKELYRRQDGVETIALGDSPNDLPMLEAADIAVVVPGP 235 (273)
T ss_pred CHHHHHHHHHHHHhccCCceEEEEcCChhhHHHHHhCCeeEEeCCC
Confidence 67788999999999999 9999999999999999999999999887
No 112
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.20 E-value=6.3e-11 Score=98.19 Aligned_cols=89 Identities=20% Similarity=0.312 Sum_probs=74.2
Q ss_pred CCCcHHHHHHHHHHCCCCEEEEeCCChHHHH--HHHHhhcCCcc-ccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcE
Q 023109 92 ALPGANRLIKHLSCHGVPMALASNSHRATIE--SKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~--~~l~~~~gl~~-~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~ 168 (287)
++||+.++|++|+++|++++++||++++... .++ +++|+.. .|+.+++++.... ..+..+++.++.+++++
T Consensus 25 ~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L-~~~gl~~~~~~~Ii~s~~~~~-----~~l~~~~~~~~~~~~~~ 98 (242)
T TIGR01459 25 TYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTL-KSLGINADLPEMIISSGEIAV-----QMILESKKRFDIRNGII 98 (242)
T ss_pred cCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHH-HHCCCCccccceEEccHHHHH-----HHHHhhhhhccCCCceE
Confidence 5789999999999999999999999877655 677 8889987 8999998875432 45666677888889999
Q ss_pred EEEeCCHhhHHHHHHcCC
Q 023109 169 LVIEDSVIGVVAGKAAGM 186 (287)
Q Consensus 169 l~iGDs~~Dv~~a~~aG~ 186 (287)
++|||+..|+.....+|.
T Consensus 99 ~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 99 YLLGHLENDIINLMQCYT 116 (242)
T ss_pred EEeCCcccchhhhcCCCc
Confidence 999999999888766654
No 113
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.18 E-value=1.7e-11 Score=103.53 Aligned_cols=68 Identities=9% Similarity=0.056 Sum_probs=56.5
Q ss_pred CcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcE--EeCCccC
Q 023109 143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADE--VINSLLD 213 (287)
Q Consensus 143 ~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~--v~~~l~e 213 (287)
-...+-.|..+++.+++.+|++++++++|||+.||++|.+.+|..+++.+. .++.+..|++ ++++..+
T Consensus 182 I~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na---~~~vK~~A~~~~v~~~n~e 251 (272)
T PRK15126 182 VLPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNA---MPQLRAELPHLPVIGHCRN 251 (272)
T ss_pred eecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCC---hHHHHHhCCCCeecCCCcc
Confidence 345667788999999999999999999999999999999999998888776 5666777764 6665443
No 114
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.17 E-value=3.3e-11 Score=99.89 Aligned_cols=99 Identities=23% Similarity=0.385 Sum_probs=81.8
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcccccee--eccCCcCCCCCCHHHHHHHHHHcCCC-CCcEE
Q 023109 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVI--VGSDEVRTGKPSPDIFLEAAKRLNME-PSSSL 169 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i--~~~~~~~~~kp~~~~~~~~~~~l~~~-~~~~l 169 (287)
++++.++++.+.++|+++ ++||.+........ .+.+...+|..+ .+.+....+||+|+.|..++++++.. +++++
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~-~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~ 217 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGI-YRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRML 217 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCc-eEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 578889999998889997 88999887776555 666766666654 45555568999999999999999875 57999
Q ss_pred EEeCC-HhhHHHHHHcCCeEEEECC
Q 023109 170 VIEDS-VIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 170 ~iGDs-~~Dv~~a~~aG~~~i~v~~ 193 (287)
||||+ ..|+.+|+++|+.++++.+
T Consensus 218 ~vGD~~~~Di~~a~~~G~~~i~v~t 242 (242)
T TIGR01459 218 MVGDSFYTDILGANRLGIDTALVLT 242 (242)
T ss_pred EECCCcHHHHHHHHHCCCeEEEEeC
Confidence 99999 4999999999999998753
No 115
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.15 E-value=1.2e-09 Score=90.60 Aligned_cols=87 Identities=13% Similarity=0.175 Sum_probs=65.0
Q ss_pred ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHH---HHHHHHhhcCCccc-cceeeccCCcCCCCCCHHHHHHHHHHcCC
Q 023109 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNES-FSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (287)
Q Consensus 88 ~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~---~~~~l~~~~gl~~~-fd~i~~~~~~~~~kp~~~~~~~~~~~l~~ 163 (287)
...++.||+.++++.++++|++++++|+++... ....+ ..+|+... ++.++..++ .++++.....+.+..++
T Consensus 115 ~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~L-kk~Gi~~~~~d~lllr~~---~~~K~~rr~~I~~~y~I 190 (266)
T TIGR01533 115 AQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNL-KRFGFPQADEEHLLLKKD---KSSKESRRQKVQKDYEI 190 (266)
T ss_pred CCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHH-HHcCcCCCCcceEEeCCC---CCCcHHHHHHHHhcCCE
Confidence 356789999999999999999999999987443 44666 77888754 456655432 34566677766665555
Q ss_pred CCCcEEEEeCCHhhHHHHH
Q 023109 164 EPSSSLVIEDSVIGVVAGK 182 (287)
Q Consensus 164 ~~~~~l~iGDs~~Dv~~a~ 182 (287)
+++|||+.+|+....
T Consensus 191 ----vl~vGD~~~Df~~~~ 205 (266)
T TIGR01533 191 ----VLLFGDNLLDFDDFF 205 (266)
T ss_pred ----EEEECCCHHHhhhhh
Confidence 899999999996543
No 116
>PTZ00445 p36-lilke protein; Provisional
Probab=99.13 E-value=6.8e-10 Score=87.16 Aligned_cols=101 Identities=15% Similarity=0.223 Sum_probs=83.9
Q ss_pred CCCcHHHHHHHHHHCCCCEEEEeCCChH---------------HHHHHHHhhcCCccccceeeccC-----------CcC
Q 023109 92 ALPGANRLIKHLSCHGVPMALASNSHRA---------------TIESKISYQHGWNESFSVIVGSD-----------EVR 145 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~l~T~~~~~---------------~~~~~l~~~~gl~~~fd~i~~~~-----------~~~ 145 (287)
..|++..++.++++.|++++++|=++.. .++..+ +..+.....+.+++.. ..+
T Consensus 76 ~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~l-k~s~~~~~i~~~~~yyp~~w~~p~~y~~~g 154 (219)
T PTZ00445 76 VTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAAL-KKSKCDFKIKKVYAYYPKFWQEPSDYRPLG 154 (219)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHH-HhcCccceeeeeeeeCCcccCChhhhhhhc
Confidence 6789999999999999999999988764 455666 5545544455555432 236
Q ss_pred CCCCCHHH--H--HHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECC
Q 023109 146 TGKPSPDI--F--LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 146 ~~kp~~~~--~--~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
..||+|++ | ++++++.|+.|+++++|+|+..++.+|++.|+.++.+..
T Consensus 155 l~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 155 LDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTG 206 (219)
T ss_pred ccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCC
Confidence 78999999 8 999999999999999999999999999999999999976
No 117
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.12 E-value=1.5e-09 Score=84.84 Aligned_cols=172 Identities=15% Similarity=0.091 Sum_probs=105.5
Q ss_pred CccEEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCC-HHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh
Q 023109 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKT-PLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSD 85 (287)
Q Consensus 8 ~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (287)
+-.+++||+|-|++|.+... .+....+........+...... +.+.+..++.+++.. ...+++. .
T Consensus 12 ~ril~~FDFD~TIid~dSD~-----wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik--------~ 78 (256)
T KOG3120|consen 12 PRILLVFDFDRTIIDQDSDN-----WVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIK--------Q 78 (256)
T ss_pred CcEEEEEecCceeecCCcch-----HHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHH--------H
Confidence 34689999999999864421 1122233332222222222222 334445555554411 1233332 2
Q ss_pred hhccCCCCCcHHHHHHHHHHCCC-CEEEEeCCChHHHHHHHHhhcCCccccceeeccCC----cC-------------CC
Q 023109 86 HLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESFSVIVGSDE----VR-------------TG 147 (287)
Q Consensus 86 ~~~~~~~~~g~~~~l~~l~~~g~-~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~----~~-------------~~ 147 (287)
.+..+|..||+.++++.+++.|. .+.|+|+++.-.++..+ +++|+.+.|+.|++... .+ +.
T Consensus 79 ~~r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~L-ea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~ 157 (256)
T KOG3120|consen 79 VLRSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEIL-EAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNL 157 (256)
T ss_pred HHhcCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHH-HHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCc
Confidence 33568999999999999999985 99999999999999999 99999999988875321 11 12
Q ss_pred CC----CHHHHHHHH---HHcCCCCCcEEEEeCCHhhHHHHHHc-CCeEEEECC
Q 023109 148 KP----SPDIFLEAA---KRLNMEPSSSLVIEDSVIGVVAGKAA-GMEVVAVPS 193 (287)
Q Consensus 148 kp----~~~~~~~~~---~~l~~~~~~~l~iGDs~~Dv~~a~~a-G~~~i~v~~ 193 (287)
.| |...+.+.. .+-|+..++.+|+||+.||+..-... +..+++-..
T Consensus 158 CPsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~ampRk 211 (256)
T KOG3120|consen 158 CPSNMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAMPRK 211 (256)
T ss_pred CchhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceecccC
Confidence 22 222222222 22267778999999999998765544 334444333
No 118
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.09 E-value=4.4e-10 Score=92.98 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=54.8
Q ss_pred CcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHH
Q 023109 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI 153 (287)
Q Consensus 94 ~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~ 153 (287)
||+.++|++|+++|++++++|++.+..+...+ +.+|+..+|+.++++++....||+++.
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~Re~v~~~L-~~lGLd~YFdvIIs~Gdv~~~kp~~e~ 207 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGDRDHVVESM-RKVKLDRYFDIIISGGHKAEEYSTMST 207 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH-HHcCCCcccCEEEECCccccCCCCccc
Confidence 78999999999999999999999999999999 999999999999999999888888643
No 119
>PLN02887 hydrolase family protein
Probab=99.09 E-value=4.7e-10 Score=102.79 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=59.5
Q ss_pred CcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccC
Q 023109 143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (287)
Q Consensus 143 ~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~e 213 (287)
-...+..|..+++.+++.+|++++++++|||+.||++|.+.+|..+++.|. .+..+..|++++.+..+
T Consensus 501 I~p~gvSKG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG~gVAMgNA---~eeVK~~Ad~VT~sNdE 568 (580)
T PLN02887 501 IVPPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLASLGVALSNG---AEKTKAVADVIGVSNDE 568 (580)
T ss_pred EecCCCCHHHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHCCCEEEeCCC---CHHHHHhCCEEeCCCCc
Confidence 345677788999999999999999999999999999999999998888877 66778889999877654
No 120
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.08 E-value=3.6e-10 Score=87.04 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=67.0
Q ss_pred CCCcHHHHHHHHHHCCCCEEEEeCCC---h-----------HHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHH
Q 023109 92 ALPGANRLIKHLSCHGVPMALASNSH---R-----------ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEA 157 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~l~T~~~---~-----------~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~ 157 (287)
..+++.+.|+++.+.|+.++|+||.. . ..++..+ +.+++. +...++.......||.+.++..+
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il-~~l~ip--~~~~~a~~~d~~RKP~~GM~~~~ 106 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENIL-KELGIP--IQVYAAPHKDPCRKPNPGMWEFA 106 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHH-HHCTS---EEEEECGCSSTTSTTSSHHHHHH
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHH-HHcCCc--eEEEecCCCCCCCCCchhHHHHH
Confidence 34589999999999999999999862 1 2233344 555554 34444444457899999999999
Q ss_pred HHHcCC----CCCcEEEEeCC-----------HhhHHHHHHcCCeEE
Q 023109 158 AKRLNM----EPSSSLVIEDS-----------VIGVVAGKAAGMEVV 189 (287)
Q Consensus 158 ~~~l~~----~~~~~l~iGDs-----------~~Dv~~a~~aG~~~i 189 (287)
++.++. +.++++||||. -.|..-|.++|++..
T Consensus 107 ~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f~ 153 (159)
T PF08645_consen 107 LKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKFY 153 (159)
T ss_dssp CCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--EE
T ss_pred HHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCccc
Confidence 988874 88899999996 579999999998753
No 121
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.06 E-value=1.3e-09 Score=90.59 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=55.4
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccC
Q 023109 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (287)
Q Consensus 146 ~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~e 213 (287)
..-.|..+++.+++.+|++++++++|||+.||++|.+.+|..+++-++ .+..+..|++++++..+
T Consensus 183 ~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~na---~~~~k~~a~~i~~~~~~ 247 (254)
T PF08282_consen 183 KGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGNA---TPELKKAADYITPSNND 247 (254)
T ss_dssp TTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETTS----HHHHHHSSEEESSGTC
T ss_pred CCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcCC---CHHHHHhCCEEecCCCC
Confidence 344567888999999999999999999999999999999988877766 56778888998888776
No 122
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.06 E-value=3.6e-09 Score=81.29 Aligned_cols=91 Identities=25% Similarity=0.255 Sum_probs=64.7
Q ss_pred CCcHHHHHHHHHHCCC--CEEEEeCCC-------hHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCC
Q 023109 93 LPGANRLIKHLSCHGV--PMALASNSH-------RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~--~v~l~T~~~-------~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~ 163 (287)
.|.+.+.++++++.+. .++|+||+. ...++..- +.+|+ ..+.. ...|| ..+.++++.++.
T Consensus 61 ~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~-~~lgI----pvl~h----~~kKP--~~~~~i~~~~~~ 129 (168)
T PF09419_consen 61 PPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALE-KALGI----PVLRH----RAKKP--GCFREILKYFKC 129 (168)
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHH-HhhCC----cEEEe----CCCCC--ccHHHHHHHHhh
Confidence 3445566777777765 499999983 44444444 66665 22221 23566 566777777754
Q ss_pred -----CCCcEEEEeCCH-hhHHHHHHcCCeEEEECCC
Q 023109 164 -----EPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSL 194 (287)
Q Consensus 164 -----~~~~~l~iGDs~-~Dv~~a~~aG~~~i~v~~~ 194 (287)
.|+++++|||.. .|+-++..+|+.++++..|
T Consensus 130 ~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~g 166 (168)
T PF09419_consen 130 QKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDG 166 (168)
T ss_pred ccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecC
Confidence 499999999999 8999999999999998764
No 123
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=99.05 E-value=8.4e-10 Score=91.18 Aligned_cols=61 Identities=13% Similarity=-0.051 Sum_probs=51.0
Q ss_pred CCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCc
Q 023109 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAAD 205 (287)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~ 205 (287)
+....+.+|+..++.+++++|++++++++|||+.||+.|++.+|..+++.+. .++.+..++
T Consensus 152 ei~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav~na---~~~~k~~a~ 212 (236)
T TIGR02471 152 DVLPLRASKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVVGNH---DPELEGLRH 212 (236)
T ss_pred EEeeCCCChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEEcCC---cHHHHHhhc
Confidence 3456778899999999999999999999999999999999999988877655 444555555
No 124
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=99.04 E-value=4.8e-10 Score=92.08 Aligned_cols=73 Identities=27% Similarity=0.393 Sum_probs=60.5
Q ss_pred cCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCH-hhHHHHHHcCCeEEEECCCCCccc--------cccCCcEEeCCccCc
Q 023109 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTH--------RYTAADEVINSLLDL 214 (287)
Q Consensus 144 ~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~-~Dv~~a~~aG~~~i~v~~~~~~~~--------~~~~a~~v~~~l~el 214 (287)
...+||.+.++..++++.+++|++|+||||+. .||..++++|++++++.+|....+ ....+|+.++++.++
T Consensus 220 ~v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~~~~~~~~PDyy~~~l~d~ 299 (306)
T KOG2882|consen 220 IVLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEAQGDNKMVPDYYADSLGDL 299 (306)
T ss_pred eecCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhcccccCCCCchHHhhHHHH
Confidence 34789999999999999999999999999999 599999999999999999755322 234467777777766
Q ss_pred Cc
Q 023109 215 RP 216 (287)
Q Consensus 215 ~~ 216 (287)
..
T Consensus 300 ~~ 301 (306)
T KOG2882|consen 300 LP 301 (306)
T ss_pred hh
Confidence 44
No 125
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=99.03 E-value=1.7e-10 Score=89.23 Aligned_cols=73 Identities=25% Similarity=0.329 Sum_probs=59.4
Q ss_pred cCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCH-hhHHHHHHcCCeEEEECCCCCcccc----ccCCcEEeCCccCcCc
Q 023109 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVINSLLDLRP 216 (287)
Q Consensus 144 ~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~-~Dv~~a~~aG~~~i~v~~~~~~~~~----~~~a~~v~~~l~el~~ 216 (287)
...+||+|.+|+.+++.+|++|++++||||.. .|+-.|+.+||..+.|.+|.-++.. ...++...+++.+...
T Consensus 177 ~vvGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rpsDe~k~~~~p~~~~d~f~~AVd 254 (262)
T KOG3040|consen 177 TVVGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRPSDEEKPPVPPDLTADNFADAVD 254 (262)
T ss_pred EEecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeeccccCCcccccCCCCcchhhhhHHHHHH
Confidence 44689999999999999999999999999999 5999999999999999997655522 3344666666655443
No 126
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.01 E-value=1.2e-09 Score=92.12 Aligned_cols=52 Identities=8% Similarity=-0.089 Sum_probs=46.4
Q ss_pred CCcCCCCCCHHHHHHHHHHcCC---CCCcEEEEeCCHhhHHHHHHcCCeEEEECC
Q 023109 142 DEVRTGKPSPDIFLEAAKRLNM---EPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~l~~---~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
+-...+-.|..+++.+++.+|+ +++++++|||+.||++|.+.+|..++|.+.
T Consensus 180 Ei~~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~gvAM~~~ 234 (271)
T PRK03669 180 HVLDASAGKDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDYAVVVKGL 234 (271)
T ss_pred EEecCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCEEEEecCC
Confidence 3345677788999999999999 999999999999999999999999888865
No 127
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.01 E-value=1.3e-08 Score=83.10 Aligned_cols=45 Identities=13% Similarity=-0.017 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEE
Q 023109 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 190 (287)
Q Consensus 146 ~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~ 190 (287)
.+..|+..++.+++.+|++++++++|||+.||++|.+.+|..+++
T Consensus 176 ~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va~ 220 (221)
T TIGR02463 176 ASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVVI 220 (221)
T ss_pred CCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEEe
Confidence 444567789999999999999999999999999999999987764
No 128
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.98 E-value=6.9e-10 Score=92.83 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=56.7
Q ss_pred cCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccC
Q 023109 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (287)
Q Consensus 144 ~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~e 213 (287)
...+..|..+++.+++.++++++++++|||+.||++|++.+|+.+++.+. .+..+..+++++++..+
T Consensus 183 ~~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~na---~~~~k~~a~~~~~~n~~ 249 (256)
T TIGR00099 183 TAKGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGNA---DEELKALADYVTDSNNE 249 (256)
T ss_pred cCCCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEecCc---hHHHHHhCCEEecCCCC
Confidence 45567788999999999999999999999999999999999998887654 45567778888877554
No 129
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.95 E-value=4.2e-10 Score=87.12 Aligned_cols=100 Identities=8% Similarity=0.055 Sum_probs=86.9
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcc-ccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCc
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~-~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~ 167 (287)
.+..+||+.++|+++.+. +.++|.|++++.+++.++ ++++... .|+.+++.+.+...+|+ +.+.+..+|.++++
T Consensus 40 ~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il-~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~ 114 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVL-DILDRGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSK 114 (162)
T ss_pred EEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHH-HHHCcCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhh
Confidence 456899999999999987 999999999999999999 8888765 88999888877666655 67788889999999
Q ss_pred EEEEeCCHhhHHHHHHcCCeEEEECC
Q 023109 168 SLVIEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 168 ~l~iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
+++|||++.++.++.++|+.+.....
T Consensus 115 vIiVDD~~~~~~~~~~NgI~i~~f~~ 140 (162)
T TIGR02251 115 VIIIDNSPYSYSLQPDNAIPIKSWFG 140 (162)
T ss_pred EEEEeCChhhhccCccCEeecCCCCC
Confidence 99999999999999999987766654
No 130
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=98.93 E-value=4e-09 Score=97.67 Aligned_cols=112 Identities=21% Similarity=0.223 Sum_probs=85.2
Q ss_pred CCCCCcHHHHHHHHHHCC-CCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcE
Q 023109 90 VKALPGANRLIKHLSCHG-VPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g-~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~ 168 (287)
.+++||+.+.+++|+++| ++++++|+.+...++..+ +++|+.++|..+. +.++ .+.+++++..++++
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~-~~lgi~~~f~~~~-------p~~K----~~~v~~l~~~~~~v 450 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVA-AELGIDEVHAELL-------PEDK----LAIVKELQEEGGVV 450 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHH-HHhCCCeeeccCC-------HHHH----HHHHHHHHHcCCEE
Confidence 578999999999999999 999999999999999999 8999977665431 1222 34555555577899
Q ss_pred EEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeC--CccCcCc
Q 023109 169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN--SLLDLRP 216 (287)
Q Consensus 169 l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~--~l~el~~ 216 (287)
+||||+.||++++++||+.+.+. ...+..+..+|.++. ++..+..
T Consensus 451 ~~vGDg~nD~~al~~A~vgia~g---~~~~~~~~~Ad~vi~~~~~~~l~~ 497 (556)
T TIGR01525 451 AMVGDGINDAPALAAADVGIAMG---AGSDVAIEAADIVLLNDDLSSLPT 497 (556)
T ss_pred EEEECChhHHHHHhhCCEeEEeC---CCCHHHHHhCCEEEeCCCHHHHHH
Confidence 99999999999999999555443 223334567888887 4555443
No 131
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.92 E-value=2.7e-09 Score=98.31 Aligned_cols=115 Identities=20% Similarity=0.235 Sum_probs=89.1
Q ss_pred cCCCCCcHHHHHHHHHHCCC-CEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCc
Q 023109 89 KVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~-~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~ 167 (287)
..+++||+.+.+++|+++|+ +++++|+.+...++..+ +++|+..+|..+. +.++ ...+++++..+++
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~-~~lgi~~~f~~~~-------p~~K----~~~i~~l~~~~~~ 427 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVA-RELGIDEVHAELL-------PEDK----LEIVKELREKYGP 427 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHH-HHcCChhhhhccC-------cHHH----HHHHHHHHhcCCE
Confidence 35789999999999999999 99999999999999999 8899977665332 1222 4566666667789
Q ss_pred EEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEe--CCccCcCcc
Q 023109 168 SLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRPE 217 (287)
Q Consensus 168 ~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~--~~l~el~~~ 217 (287)
++||||+.||++++++||+.+.+.. ...+.....+|.++ +++.++...
T Consensus 428 v~~vGDg~nD~~al~~A~vgia~g~--~~~~~~~~~ad~vl~~~~l~~l~~~ 477 (536)
T TIGR01512 428 VAMVGDGINDAPALAAADVGIAMGA--SGSDVAIETADVVLLNDDLSRLPQA 477 (536)
T ss_pred EEEEeCCHHHHHHHHhCCEEEEeCC--CccHHHHHhCCEEEECCCHHHHHHH
Confidence 9999999999999999996444432 22334456788888 788887554
No 132
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=98.91 E-value=2e-07 Score=73.56 Aligned_cols=119 Identities=18% Similarity=0.123 Sum_probs=90.4
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcC-------CccccceeeccCCcCCCCCCHHHHHHHHHHc
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHG-------WNESFSVIVGSDEVRTGKPSPDIFLEAAKRL 161 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~g-------l~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l 161 (287)
..+.++++...++..+..|++++|.|.++....+... .+-+ +..+||.-++ .|.....|.++.+.+
T Consensus 121 k~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllf-g~s~~gdl~~y~~gyfDt~iG------~K~e~~sy~~I~~~I 193 (254)
T KOG2630|consen 121 KAHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLF-GYSDAGDLRKYISGYFDTTIG------LKVESQSYKKIGHLI 193 (254)
T ss_pred cccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHH-cccCcchHHHHhhhhhhcccc------ceehhHHHHHHHHHh
Confidence 4588999999999999999999999999888665544 4433 2234554332 566678999999999
Q ss_pred CCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccc--cCCcEEeCCccCc
Q 023109 162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRY--TAADEVINSLLDL 214 (287)
Q Consensus 162 ~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~--~~a~~v~~~l~el 214 (287)
|.++.++++.-|.+....+|+.+|..+..+.++++..-.. ....-++.++..+
T Consensus 194 g~s~~eiLfLTd~~~Ea~aa~~aGl~a~l~~rPgna~l~dd~~~~y~~i~~F~~l 248 (254)
T KOG2630|consen 194 GKSPREILFLTDVPREAAAARKAGLQAGLVSRPGNAPLPDDAKVEYCVIWSFEIL 248 (254)
T ss_pred CCChhheEEeccChHHHHHHHhcccceeeeecCCCCCCCcccccceeeeccchhh
Confidence 9999999999999999999999999988887754433322 2225555666544
No 133
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=1.1e-07 Score=72.45 Aligned_cols=157 Identities=17% Similarity=0.138 Sum_probs=95.4
Q ss_pred EEEEecCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHH--hCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhc
Q 023109 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKI--VGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLC 88 (287)
Q Consensus 11 ~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (287)
.++.|+|||+.-.+.-. .+-..+|..-........ ...+.++.+..++...+.+ .++..+. ...
T Consensus 5 vi~sDFDGTITl~Ds~~-----~itdtf~~~e~k~l~~~vls~tiS~rd~~g~mf~~i~~s--~~Eile~-------llk 70 (220)
T COG4359 5 VIFSDFDGTITLNDSND-----YITDTFGPGEWKALKDGVLSKTISFRDGFGRMFGSIHSS--LEEILEF-------LLK 70 (220)
T ss_pred EEEecCCCceEecchhH-----HHHhccCchHHHHHHHHHhhCceeHHHHHHHHHHhcCCC--HHHHHHH-------HHh
Confidence 57889999998443211 111122222111111111 1234566666777666643 2333221 124
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccc-----------------eeeccCCcCCCCCCH
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-----------------VIVGSDEVRTGKPSP 151 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd-----------------~i~~~~~~~~~kp~~ 151 (287)
.+.+.||.+++++.+++++++++++|++....+...+ +..+-.+..+ .+...++...+.-+
T Consensus 71 ~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lf-e~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK- 148 (220)
T COG4359 71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLF-EGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDK- 148 (220)
T ss_pred hcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHH-HhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCc-
Confidence 5789999999999999999999999999999998888 4433111111 12222222222223
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCC
Q 023109 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 186 (287)
Q Consensus 152 ~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~ 186 (287)
...++.+.-+++.++|+|||..|+.+|+....
T Consensus 149 ---~~vI~~l~e~~e~~fy~GDsvsDlsaaklsDl 180 (220)
T COG4359 149 ---SSVIHELSEPNESIFYCGDSVSDLSAAKLSDL 180 (220)
T ss_pred ---chhHHHhhcCCceEEEecCCcccccHhhhhhh
Confidence 23556666678889999999999999998773
No 134
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.82 E-value=7.5e-09 Score=86.56 Aligned_cols=69 Identities=9% Similarity=-0.073 Sum_probs=54.0
Q ss_pred CcCCCCCCHHHHHHHHHHcCCC--CCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccC--C-cEEeCCc
Q 023109 143 EVRTGKPSPDIFLEAAKRLNME--PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTA--A-DEVINSL 211 (287)
Q Consensus 143 ~~~~~kp~~~~~~~~~~~l~~~--~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~--a-~~v~~~l 211 (287)
..+....|...++++++.++++ .+++++|||+.||++|.+.+|..+++.+.....++.+.. + +++.++.
T Consensus 170 i~~~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~Na~~~~~~lk~~~~a~~~vt~~~ 243 (256)
T TIGR01486 170 VLGAGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGPNGPNVSLKPGDPGSFLLTPAP 243 (256)
T ss_pred EecCCCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEeCCCCCCccccCccCCCcEEEcCCC
Confidence 3445667788899999999999 999999999999999999999999988874322345554 3 4666553
No 135
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=98.77 E-value=6.7e-08 Score=80.46 Aligned_cols=52 Identities=25% Similarity=0.243 Sum_probs=43.6
Q ss_pred CCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECC
Q 023109 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
+....+.+|+.+++.+++.++++++++++|||+.||+.|++.++..++.+.+
T Consensus 160 di~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~n 211 (249)
T TIGR01485 160 DILPQGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSN 211 (249)
T ss_pred EEEeCCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECC
Confidence 4456788999999999999999999999999999999999996544444433
No 136
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.77 E-value=1.7e-08 Score=93.54 Aligned_cols=111 Identities=18% Similarity=0.182 Sum_probs=82.1
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEE
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l 169 (287)
.+++||+.+++++|++.|++++++|+.+...++..+ +++|+. +++ +. .++++ ...++.++..+++|+
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia-~~lgi~-----~~~-~~--~p~~K----~~~v~~l~~~~~~v~ 470 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVA-KELGIN-----VRA-EV--LPDDK----AALIKELQEKGRVVA 470 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHH-HHcCCc-----EEc-cC--ChHHH----HHHHHHHHHcCCEEE
Confidence 578999999999999999999999999999999988 888984 221 11 12233 344445555778999
Q ss_pred EEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeC--CccCcCc
Q 023109 170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN--SLLDLRP 216 (287)
Q Consensus 170 ~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~--~l~el~~ 216 (287)
||||+.||++++++||+.+.+. ...+.....+|.++. ++.++..
T Consensus 471 ~VGDg~nD~~al~~A~vgia~g---~g~~~a~~~Advvl~~~~l~~l~~ 516 (562)
T TIGR01511 471 MVGDGINDAPALAQADVGIAIG---AGTDVAIEAADVVLMRNDLNDVAT 516 (562)
T ss_pred EEeCCCccHHHHhhCCEEEEeC---CcCHHHHhhCCEEEeCCCHHHHHH
Confidence 9999999999999999755443 223334567788884 5555543
No 137
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=98.77 E-value=1.4e-07 Score=83.89 Aligned_cols=104 Identities=18% Similarity=0.242 Sum_probs=70.9
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhc--------CCccccceeeccCC-----------------c
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH--------GWNESFSVIVGSDE-----------------V 144 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~--------gl~~~fd~i~~~~~-----------------~ 144 (287)
+...|.+..+|+.+++.|.++.++||++..+++..+.-.+ .+.++||.|++... .
T Consensus 182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~ 261 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTET 261 (448)
T ss_dssp EE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTT
T ss_pred ccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCC
Confidence 3457899999999999999999999999999988874333 36689999886410 0
Q ss_pred CC---------CCC----CHHHHHHHHHHcCCCCCcEEEEeCCH-hhHHHHHHc-CCeEEEECC
Q 023109 145 RT---------GKP----SPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAA-GMEVVAVPS 193 (287)
Q Consensus 145 ~~---------~kp----~~~~~~~~~~~l~~~~~~~l~iGDs~-~Dv~~a~~a-G~~~i~v~~ 193 (287)
+. .++ ...-.....+.+|..+.+++||||+. .|+...+.. |+.|+++-.
T Consensus 262 g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~ 325 (448)
T PF05761_consen 262 GKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIP 325 (448)
T ss_dssp SSEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-T
T ss_pred CccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEeh
Confidence 10 011 12335677888999999999999999 799888876 999999866
No 138
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.76 E-value=1e-08 Score=81.86 Aligned_cols=171 Identities=15% Similarity=0.291 Sum_probs=90.3
Q ss_pred cE-EEEecCCcccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH--
Q 023109 10 SC-VILDLDGTLLNTDGMFSEVLKTFLVKYGKE--WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS-- 84 (287)
Q Consensus 10 k~-iifDlDGTL~d~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 84 (287)
+. |++|+||||.|+...+...++ +.++.. .+.+.. .+... ...++. ...+....+.+.+.
T Consensus 2 ~i~I~iDiDgVLad~~~~~~~~~n---~~~~~~~~~~~~~~---~~~~~-------~~~~g~--~~~e~~~~~~~~~~~~ 66 (191)
T PF06941_consen 2 KIRIAIDIDGVLADFNSAFIEWFN---EEFGKNPELTPEDI---TGYWD-------WEKWGI--TEPEFYEKLWRFYEEP 66 (191)
T ss_dssp -EEEEEESBTTTB-HHHHHHHHHH---HHTTTS----GGGG---TSSSH-------HHHHHH--HSTTHHHHHHHHHTST
T ss_pred CcEEEEECCCCCcccHHHHHHHHH---HHcCCCCCCCHHHh---hhhhH-------HHHhCC--CCHHHHHHHHHHHhCh
Confidence 35 899999999999775555443 344444 222221 11011 111110 01122233333332
Q ss_pred hhhccCCCCCcHHHHHHHHHHCCCCEEEEeCCChH-------HHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHH
Q 023109 85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRA-------TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEA 157 (287)
Q Consensus 85 ~~~~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~-------~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~ 157 (287)
..+..+++.||+.+.+++|.+.|..++++|+++.. .....+.++++... ++.++.+. .|.
T Consensus 67 ~~f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~-~~~~~~~~----~K~-------- 133 (191)
T PF06941_consen 67 GFFSNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIP-YDNLIFTG----DKT-------- 133 (191)
T ss_dssp TTTTT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHH-HCCEEEES----SGG--------
T ss_pred hhhcCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCc-hheEEEec----CCC--------
Confidence 23467899999999999999999778877766433 22344545545322 23333321 121
Q ss_pred HHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccCcCcc
Q 023109 158 AKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE 217 (287)
Q Consensus 158 ~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~~ 217 (287)
.++.+ ++|+|++..+..+.+.|++++++..++.+... ....+.+..|+...
T Consensus 134 --~v~~D----vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~~---~~~Rv~~W~ei~~~ 184 (191)
T PF06941_consen 134 --LVGGD----VLIDDRPHNLEQFANAGIPVILFDQPYNRDES---NFPRVNNWEEIEDL 184 (191)
T ss_dssp --GC--S----EEEESSSHHHSS-SSESSEEEEE--GGGTT-----TSEEE-STTSHHHH
T ss_pred --eEecc----EEecCChHHHHhccCCCceEEEEcCCCCCCCC---CCccCCCHHHHHHH
Confidence 12222 89999999999999999999999987665433 45666666665443
No 139
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.72 E-value=4.6e-08 Score=81.21 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=46.5
Q ss_pred CcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcC
Q 023109 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 145 (287)
Q Consensus 94 ~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~ 145 (287)
|++.++|++|+++|++++++|++++..+...+ +.+|+..+|+.+++++...
T Consensus 151 p~V~EtL~eLkekGikLaIvTNg~Re~v~~~L-e~lgL~~yFDvII~~g~i~ 201 (303)
T PHA03398 151 PFVYDSLDELKERGCVLVLWSYGNREHVVHSL-KETKLEGYFDIIICGGRKA 201 (303)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HHcCCCccccEEEECCCcc
Confidence 78889999999999999999999999999999 9999999999998877543
No 140
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.71 E-value=2.9e-08 Score=96.61 Aligned_cols=124 Identities=19% Similarity=0.210 Sum_probs=96.3
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCC----------------CCCCHHHH
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRT----------------GKPSPDIF 154 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~----------------~kp~~~~~ 154 (287)
+++|++.+.++.|++.|+++.++|+.+...+.... +..|+...++.++++++... ....|+-.
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia-~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K 606 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIA-RRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHK 606 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHH
Confidence 78999999999999999999999999999999998 88999776666555443322 23567777
Q ss_pred HHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEe--CCccCcCcc
Q 023109 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRPE 217 (287)
Q Consensus 155 ~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~--~~l~el~~~ 217 (287)
..+.+.++..++.+.|+||+.||++++++|++.+.+... ..+-.+..+|.++ +++..+...
T Consensus 607 ~~iv~~lq~~g~~v~mvGDGvND~pAl~~AdVGia~g~~--g~~va~~aaDivl~dd~~~~i~~~ 669 (884)
T TIGR01522 607 MKIVKALQKRGDVVAMTGDGVNDAPALKLADIGVAMGQT--GTDVAKEAADMILTDDDFATILSA 669 (884)
T ss_pred HHHHHHHHHCCCEEEEECCCcccHHHHHhCCeeEecCCC--cCHHHHHhcCEEEcCCCHHHHHHH
Confidence 888888877788999999999999999999965554221 2233356789998 557766554
No 141
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.65 E-value=3.9e-08 Score=80.44 Aligned_cols=44 Identities=9% Similarity=0.037 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHcCC--CCCcEEEEeCCHhhHHHHHHcCCeEEE
Q 023109 147 GKPSPDIFLEAAKRLNM--EPSSSLVIEDSVIGVVAGKAAGMEVVA 190 (287)
Q Consensus 147 ~kp~~~~~~~~~~~l~~--~~~~~l~iGDs~~Dv~~a~~aG~~~i~ 190 (287)
.-.++.....+++.+++ .++++++|||+.||+.|.+.+|+.+++
T Consensus 179 ~~sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~v 224 (225)
T TIGR02461 179 GSDKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFLV 224 (225)
T ss_pred CCCHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEec
Confidence 45556778888888876 667999999999999999999987764
No 142
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.65 E-value=1.2e-07 Score=92.07 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=86.3
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEE
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l 169 (287)
-+++|++.+.++++++.|++++++|+.+...++..+ +.+|+...|..+. |+...++++.++..+++++
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia-~~lgi~~~~~~~~-----------p~~K~~~i~~l~~~~~~v~ 716 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIA-KEAGIDEVIAGVL-----------PDGKAEAIKRLQSQGRQVA 716 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCCEEEeCCC-----------HHHHHHHHHHHhhcCCEEE
Confidence 377899999999999999999999999999998888 8889865443321 3344667777888889999
Q ss_pred EEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEE--eCCccCcCccc
Q 023109 170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEV--INSLLDLRPEK 218 (287)
Q Consensus 170 ~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v--~~~l~el~~~~ 218 (287)
||||+.||++++++||+.+.+.+. .+.....+|.+ .+++.++...+
T Consensus 717 ~vGDg~nD~~al~~Agvgia~g~g---~~~a~~~ad~vl~~~~~~~i~~~i 764 (834)
T PRK10671 717 MVGDGINDAPALAQADVGIAMGGG---SDVAIETAAITLMRHSLMGVADAL 764 (834)
T ss_pred EEeCCHHHHHHHHhCCeeEEecCC---CHHHHHhCCEEEecCCHHHHHHHH
Confidence 999999999999999986655532 33334445444 46666665443
No 143
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.59 E-value=8.3e-07 Score=68.27 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=57.5
Q ss_pred CCCcHHHHHHHHHHCCCCEEEEeCCChHHHH---HHHHhh-----cCCccccceeeccCCc---------CCCCC---CH
Q 023109 92 ALPGANRLIKHLSCHGVPMALASNSHRATIE---SKISYQ-----HGWNESFSVIVGSDEV---------RTGKP---SP 151 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~---~~l~~~-----~gl~~~fd~i~~~~~~---------~~~kp---~~ 151 (287)
..|++.+++++++++|++++++|+++...+. ..+ .. .++. ...++++... ...+| +.
T Consensus 28 ~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l-~~~~~~~~~lp--~g~li~~~g~~~~~~~~e~i~~~~~~~K~ 104 (157)
T smart00775 28 THPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYL-SQIKQDGHNLP--HGPVLLSPDRLFAALHREVISKKPEVFKI 104 (157)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHH-HHhhhccccCC--CceEEEcCCcchhhhhcccccCCHHHHHH
Confidence 3589999999999999999999999877764 455 33 1232 1233433321 12223 22
Q ss_pred HHHHHHHHHcCCCCCcEE-EEeCCHhhHHHHHHcCCe
Q 023109 152 DIFLEAAKRLNMEPSSSL-VIEDSVIGVVAGKAAGME 187 (287)
Q Consensus 152 ~~~~~~~~~l~~~~~~~l-~iGDs~~Dv~~a~~aG~~ 187 (287)
+.++.+.+.+.-..-.++ .+||+.+|+.+.+++|+.
T Consensus 105 ~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 105 ACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 233333333321122444 478889999999999985
No 144
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=98.58 E-value=2.2e-07 Score=66.74 Aligned_cols=121 Identities=12% Similarity=0.146 Sum_probs=97.3
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcE
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~ 168 (287)
.-.+++.+.+.+++|++. +.++++|+-....+...+ +..|+. .+.++.. .+++...++++.++-+.+-|
T Consensus 28 gGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~la-e~~gi~--~~rv~a~-------a~~e~K~~ii~eLkk~~~k~ 96 (152)
T COG4087 28 GGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLA-EFVGIP--VERVFAG-------ADPEMKAKIIRELKKRYEKV 96 (152)
T ss_pred CcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHH-HHcCCc--eeeeecc-------cCHHHHHHHHHHhcCCCcEE
Confidence 346788999999999999 999999998877777777 777753 3444432 23567788999999888999
Q ss_pred EEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccCcCccccC
Q 023109 169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWG 220 (287)
Q Consensus 169 l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~~~~~ 220 (287)
++|||+.||+.+.++|....+.+...+.++.....+|.++.++.++.....+
T Consensus 97 vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvik~i~e~ldl~~~ 148 (152)
T COG4087 97 VMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVLKEIAEILDLLKD 148 (152)
T ss_pred EEecCCcchHHHhhhcccceEEeccCCcchHHHhhchhhhhhHHHHHHHhhc
Confidence 9999999999999999998888877666666678889999999888765543
No 145
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.57 E-value=5e-08 Score=74.81 Aligned_cols=80 Identities=18% Similarity=0.143 Sum_probs=63.6
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCc-ccc-ceeeccCCcCCCCCCHHHHHHHH-HHcCCCC
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ESF-SVIVGSDEVRTGKPSPDIFLEAA-KRLNMEP 165 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~-~~f-d~i~~~~~~~~~kp~~~~~~~~~-~~l~~~~ 165 (287)
.+.++||+.++|+++++. +.++++|++.+.++..++ +.++.. .+| +.+++.+++.... .|-+ ..++.+.
T Consensus 56 ~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl-~~ldp~~~~F~~ri~~rd~~~~~~------~KdL~~i~~~d~ 127 (156)
T TIGR02250 56 LTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIA-KLIDPDGKYFGDRIISRDESGSPH------TKSLLRLFPADE 127 (156)
T ss_pred EEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHH-HHhCcCCCeeccEEEEeccCCCCc------cccHHHHcCCCc
Confidence 567899999999999865 999999999999999999 888887 478 6777776654211 2224 4467788
Q ss_pred CcEEEEeCCHh
Q 023109 166 SSSLVIEDSVI 176 (287)
Q Consensus 166 ~~~l~iGDs~~ 176 (287)
+.++.|+|++.
T Consensus 128 ~~vvivDd~~~ 138 (156)
T TIGR02250 128 SMVVIIDDRED 138 (156)
T ss_pred ccEEEEeCCHH
Confidence 89999999984
No 146
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.56 E-value=3.9e-07 Score=76.50 Aligned_cols=69 Identities=10% Similarity=0.031 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHc----CCeEEEECCCCCccccccCCcEEeCCccCcCccccC
Q 023109 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA----GMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWG 220 (287)
Q Consensus 145 ~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~a----G~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~~~~~ 220 (287)
..+..|...+.++++.+++..+++++|||+.||..|.+.+ |..+.+.+. ...|.+.+++..++...+..
T Consensus 170 p~g~~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a-------~~~A~~~l~~~~~v~~~L~~ 242 (266)
T PRK10187 170 PRGTNKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTG-------ATQASWRLAGVPDVWSWLEM 242 (266)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCC-------CCcCeEeCCCHHHHHHHHHH
Confidence 3455678899999999999999999999999999999998 655444333 14467888888887655433
No 147
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.50 E-value=4e-06 Score=67.88 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=62.8
Q ss_pred ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHH---HHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCC
Q 023109 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (287)
Q Consensus 88 ~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~---~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~ 164 (287)
...+..|++.++++.++++|+.++++|+.+... ....| ...|+..+ +.++-.......++.........+.+--.
T Consensus 117 ~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL-~~~G~~~~-~~LiLR~~~d~~~~~~~yKs~~R~~l~~~ 194 (229)
T TIGR01675 117 GAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNL-INAGFTGW-KHLILRGLEDSNKTVVTYKSEVRKSLMEE 194 (229)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHH-HHcCCCCc-CeeeecCCCCCCchHhHHHHHHHHHHHhC
Confidence 467899999999999999999999999998665 55566 56677653 55555432222332211112222222212
Q ss_pred CC-cEEEEeCCHhhHHHHHHcCCeEEEECC
Q 023109 165 PS-SSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 165 ~~-~~l~iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
.- =+..|||..+|+.+ ..+|.++.-+++
T Consensus 195 GYrIv~~iGDq~sDl~G-~~~~~RtFKLPN 223 (229)
T TIGR01675 195 GYRIWGNIGDQWSDLLG-SPPGRRTFKLPN 223 (229)
T ss_pred CceEEEEECCChHHhcC-CCccCceeeCCC
Confidence 22 24668999999955 344545544443
No 148
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.47 E-value=1.6e-06 Score=61.42 Aligned_cols=84 Identities=19% Similarity=0.174 Sum_probs=54.3
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCCh---HHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCc
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHR---ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~---~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~ 167 (287)
.+.||+.++++.++++|++++++||++. .....++ ...|+.-..+.++++. ......++.. .....
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L-~~~Gi~~~~~~i~ts~---------~~~~~~l~~~-~~~~~ 82 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL-KKLGIPVDEDEIITSG---------MAAAEYLKEH-KGGKK 82 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH-HHTTTT--GGGEEEHH---------HHHHHHHHHH-TTSSE
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH-HhcCcCCCcCEEEChH---------HHHHHHHHhc-CCCCE
Confidence 3678999999999999999999999953 3455567 7788875556776643 2333444442 23456
Q ss_pred EEEEeCCHhhHHHHHHcCC
Q 023109 168 SLVIEDSVIGVVAGKAAGM 186 (287)
Q Consensus 168 ~l~iGDs~~Dv~~a~~aG~ 186 (287)
+.++|-. .....++.+|+
T Consensus 83 v~vlG~~-~l~~~l~~~G~ 100 (101)
T PF13344_consen 83 VYVLGSD-GLREELREAGF 100 (101)
T ss_dssp EEEES-H-HHHHHHHHTTE
T ss_pred EEEEcCH-HHHHHHHHcCC
Confidence 7777754 66666777764
No 149
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=98.46 E-value=1.4e-05 Score=72.46 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=57.0
Q ss_pred CCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccC------------CcCCCCCCHH-HHHHHH
Q 023109 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD------------EVRTGKPSPD-IFLEAA 158 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~------------~~~~~kp~~~-~~~~~~ 158 (287)
+.+.+.+.+ +++|. .+++|++++.+++..+++.+|++ .+++++ -.+..-...+ -...+.
T Consensus 111 l~~~a~~~~---~~~g~-~vvVSASp~~~Vepfa~~~LGid----~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~ 182 (497)
T PLN02177 111 VHPETWRVF---NSFGK-RYIITASPRIMVEPFVKTFLGAD----KVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVL 182 (497)
T ss_pred cCHHHHHHH---HhCCC-EEEEECCcHHHHHHHHHHcCCCC----EEEecccEECcCCEEeeeecCCCCCccHHHHHHHH
Confidence 555555544 45664 59999999999999984457764 333332 1110000111 222333
Q ss_pred HHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECC
Q 023109 159 KRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 159 ~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
+.+|.+... .+.|||.+|.++...++-..++-..
T Consensus 183 ~~~g~~~~~-~aYgDS~sD~plL~~a~e~y~V~~~ 216 (497)
T PLN02177 183 KEFGDALPD-LGLGDRETDHDFMSICKEGYMVPRT 216 (497)
T ss_pred HHhCCCCce-EEEECCccHHHHHHhCCccEEeCCC
Confidence 445644334 8999999999999999977665553
No 150
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.45 E-value=2.6e-07 Score=66.34 Aligned_cols=91 Identities=18% Similarity=0.190 Sum_probs=67.8
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCC-CHHHHHHHHHH------c
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKP-SPDIFLEAAKR------L 161 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp-~~~~~~~~~~~------l 161 (287)
.+.+++.+.+++..++.+|+-+..+|=+....+-+.+ ..+++..+|+.++.- +.| +...+.++++. .
T Consensus 39 ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aL-ral~~~~yFhy~Vie-----PhP~K~~ML~~llr~i~~er~~ 112 (164)
T COG4996 39 EVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKAL-RALDLLQYFHYIVIE-----PHPYKFLMLSQLLREINTERNQ 112 (164)
T ss_pred EEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHH-HHhchhhhEEEEEec-----CCChhHHHHHHHHHHHHHhhcc
Confidence 5789999999999999999999999988887777788 889999999998742 111 11234444443 3
Q ss_pred CCCCCcEEEEeCCHhhH-HHHHHcC
Q 023109 162 NMEPSSSLVIEDSVIGV-VAGKAAG 185 (287)
Q Consensus 162 ~~~~~~~l~iGDs~~Dv-~~a~~aG 185 (287)
.+.|++++|++|..--+ ..+...|
T Consensus 113 ~ikP~~Ivy~DDR~iH~~~Iwe~~G 137 (164)
T COG4996 113 KIKPSEIVYLDDRRIHFGNIWEYLG 137 (164)
T ss_pred ccCcceEEEEecccccHHHHHHhcC
Confidence 47899999999987333 2344455
No 151
>PLN02382 probable sucrose-phosphatase
Probab=98.41 E-value=3e-06 Score=75.41 Aligned_cols=50 Identities=18% Similarity=0.134 Sum_probs=43.8
Q ss_pred cCCCCCCHHHHHHHHHHc---CCCCCcEEEEeCCHhhHHHHHHcC-CeEEEECC
Q 023109 144 VRTGKPSPDIFLEAAKRL---NMEPSSSLVIEDSVIGVVAGKAAG-MEVVAVPS 193 (287)
Q Consensus 144 ~~~~kp~~~~~~~~~~~l---~~~~~~~l~iGDs~~Dv~~a~~aG-~~~i~v~~ 193 (287)
...+-.|..+++.+++.+ |++++++++|||+.||++|.+.+| ..+++.|.
T Consensus 170 ~p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA 223 (413)
T PLN02382 170 LPQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNA 223 (413)
T ss_pred EeCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCC
Confidence 445666788999999999 999999999999999999999999 67777665
No 152
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.36 E-value=3e-06 Score=81.07 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=79.8
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEE
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l 169 (287)
-+++|++.+.+++|++.|++++++|+.+...++... +.+|+..+++ .. |+-....++.++ .++.++
T Consensus 567 d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia-~~lgi~~~~~----------~~--p~~K~~~v~~l~-~~~~v~ 632 (741)
T PRK11033 567 DTLRADARQAISELKALGIKGVMLTGDNPRAAAAIA-GELGIDFRAG----------LL--PEDKVKAVTELN-QHAPLA 632 (741)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCeecC----------CC--HHHHHHHHHHHh-cCCCEE
Confidence 478999999999999999999999999999999888 8899852211 12 222334555555 346899
Q ss_pred EEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEe--CCccCcC
Q 023109 170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLR 215 (287)
Q Consensus 170 ~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~--~~l~el~ 215 (287)
||||+.||.++++.|++.+.+.+. .+.....+|.++ +++.++.
T Consensus 633 mvGDgiNDapAl~~A~vgia~g~~---~~~a~~~adivl~~~~l~~l~ 677 (741)
T PRK11033 633 MVGDGINDAPAMKAASIGIAMGSG---TDVALETADAALTHNRLRGLA 677 (741)
T ss_pred EEECCHHhHHHHHhCCeeEEecCC---CHHHHHhCCEEEecCCHHHHH
Confidence 999999999999999977666532 333344566655 4555554
No 153
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.33 E-value=5.9e-07 Score=73.48 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=59.2
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHH---HHHHHHhhcCCccccceeeccC-CcCCCC----CCHHHHHHHHHHc
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSD-EVRTGK----PSPDIFLEAAKRL 161 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~---~~~~l~~~~gl~~~fd~i~~~~-~~~~~k----p~~~~~~~~~~~l 161 (287)
.+..|++.++++.++++|+.|+++|+.+... ...-| ...|...+ +.++... .....+ -+.+. ++.++.-
T Consensus 114 ~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL-~~~G~~~~-~~l~lr~~~~~~~~~~~~yK~~~-r~~i~~~ 190 (229)
T PF03767_consen 114 APAIPGALELYNYARSRGVKVFFITGRPESQREATEKNL-KKAGFPGW-DHLILRPDKDPSKKSAVEYKSER-RKEIEKK 190 (229)
T ss_dssp GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHH-HHHTTSTB-SCGEEEEESSTSS------SHHH-HHHHHHT
T ss_pred CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHH-HHcCCCcc-chhccccccccccccccccchHH-HHHHHHc
Confidence 4788999999999999999999999986553 33445 55575433 3333222 211111 12222 3333333
Q ss_pred CCCCCcEEEEeCCHhhHHHHHHc---CCeEEEECC
Q 023109 162 NMEPSSSLVIEDSVIGVVAGKAA---GMEVVAVPS 193 (287)
Q Consensus 162 ~~~~~~~l~iGDs~~Dv~~a~~a---G~~~i~v~~ 193 (287)
|... +++|||+.+|+..++.. +.+++.++.
T Consensus 191 Gy~I--i~~iGD~~~D~~~~~~~~~~~~r~f~lPN 223 (229)
T PF03767_consen 191 GYRI--IANIGDQLSDFSGAKTAGARAERWFKLPN 223 (229)
T ss_dssp TEEE--EEEEESSGGGCHCTHHHHHHHTTEEE-TT
T ss_pred CCcE--EEEeCCCHHHhhcccccccccceEEEcCC
Confidence 3222 78899999999994433 344555444
No 154
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=98.33 E-value=2.9e-06 Score=79.46 Aligned_cols=111 Identities=12% Similarity=0.050 Sum_probs=86.1
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~ 170 (287)
+++|++.+.+++|++.|+++.++|+-+...+.++. +.+|+.+.|.. . .|+-..++.+.++-..+-+.|
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA-~elGI~~v~A~---------~--~PedK~~iV~~lQ~~G~~VaM 508 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIA-KEAGVDRFVAE---------C--KPEDKINVIREEQAKGHIVAM 508 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCceEEcC---------C--CHHHHHHHHHHHHhCCCEEEE
Confidence 78999999999999999999999999999999888 88898543221 2 356667777777766778999
Q ss_pred EeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEe--CCccCcCc
Q 023109 171 IEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRP 216 (287)
Q Consensus 171 iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~--~~l~el~~ 216 (287)
+||+.||.++.++|.+..++. ++ .+-.++.+|.+. +++..+..
T Consensus 509 tGDGvNDAPALa~ADVGIAMg-sG--TdvAkeAADiVLldd~ls~Iv~ 553 (673)
T PRK14010 509 TGDGTNDAPALAEANVGLAMN-SG--TMSAKEAANLIDLDSNPTKLME 553 (673)
T ss_pred ECCChhhHHHHHhCCEEEEeC-CC--CHHHHHhCCEEEcCCCHHHHHH
Confidence 999999999999999776666 32 344466777776 44544443
No 155
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=98.32 E-value=1.2e-06 Score=85.80 Aligned_cols=123 Identities=16% Similarity=0.108 Sum_probs=89.6
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcccc----ceeeccCC----------------cCCCCCC
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF----SVIVGSDE----------------VRTGKPS 150 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~f----d~i~~~~~----------------~~~~kp~ 150 (287)
|+++++.+.++.+++.|++++++|+.+...+.... +..|+...= ...+.+.+ .-..+..
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia-~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~ 615 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAIC-RRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVE 615 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHH-HHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecC
Confidence 78999999999999999999999999988888888 888874310 11122111 1112334
Q ss_pred HHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCC--ccCcCcc
Q 023109 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINS--LLDLRPE 217 (287)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~--l~el~~~ 217 (287)
|+-..++.+.++...+.+.|+||+.||+++.+.|++.+.+. . ..+..+..+|+++.+ +..+.+.
T Consensus 616 P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGia~g-~--g~~~ak~aAD~vl~dd~f~~i~~~ 681 (917)
T TIGR01116 616 PSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMG-S--GTEVAKEASDMVLADDNFATIVAA 681 (917)
T ss_pred HHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeEECC-C--CcHHHHHhcCeEEccCCHHHHHHH
Confidence 55667777888877788999999999999999999866554 2 234446778999977 6665543
No 156
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.31 E-value=4.6e-06 Score=69.26 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=38.5
Q ss_pred cCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECC
Q 023109 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 144 ~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
.+..-.|...++.+++++++++++++++|||.||+.|. ..+...++|.+
T Consensus 160 lP~~a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL-~~~~~~vvV~N 208 (247)
T PF05116_consen 160 LPKGASKGAALRYLMERWGIPPEQVLVAGDSGNDLEML-EGGDHGVVVGN 208 (247)
T ss_dssp EETT-SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHH-CCSSEEEE-TT
T ss_pred ccCCCCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHH-cCcCCEEEEcC
Confidence 45566678999999999999999999999999999999 66666676665
No 157
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=98.30 E-value=2.6e-06 Score=79.69 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=79.5
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~ 170 (287)
+++|++.+.+++|++.|++++++|+.+...+.... +.+|+.+. ++ .. .|+-.....+.+.-....+.|
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA-~~lGI~~v----~a-----~~--~PedK~~~v~~lq~~g~~Vam 513 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIA-AEAGVDDF----IA-----EA--TPEDKIALIRQEQAEGKLVAM 513 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCEE----Ec-----CC--CHHHHHHHHHHHHHcCCeEEE
Confidence 78999999999999999999999999999999888 88898543 22 12 244445555666555668999
Q ss_pred EeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEe
Q 023109 171 IEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI 208 (287)
Q Consensus 171 iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~ 208 (287)
+||+.||.++.+.|++.+++.+. .+..+..++.+.
T Consensus 514 vGDG~NDapAL~~AdvGiAm~~g---t~~akeaadivL 548 (675)
T TIGR01497 514 TGDGTNDAPALAQADVGVAMNSG---TQAAKEAANMVD 548 (675)
T ss_pred ECCCcchHHHHHhCCEeEEeCCC---CHHHHHhCCEEE
Confidence 99999999999999987776532 333455666665
No 158
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.27 E-value=5.4e-05 Score=70.20 Aligned_cols=48 Identities=6% Similarity=-0.027 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEE--eCCHhhHHHHHHcCCeEEEECC
Q 023109 146 TGKPSPDIFLEAAKRLNMEPSSSLVI--EDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 146 ~~kp~~~~~~~~~~~l~~~~~~~l~i--GDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
....|..+++.+++.++++.++++.| ||+.||++|.+.+|..+++-+.
T Consensus 610 ~gvdKG~AL~~L~e~~gI~~~eViafalGDs~NDisMLe~Ag~gVAM~~~ 659 (694)
T PRK14502 610 GGNDKGKAIKILNELFRLNFGNIHTFGLGDSENDYSMLETVDSPILVQRP 659 (694)
T ss_pred CCCCHHHHHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhCCceEEEcCC
Confidence 35667889999999999999999999 9999999999999998888655
No 159
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=98.26 E-value=4.2e-06 Score=78.49 Aligned_cols=111 Identities=15% Similarity=0.082 Sum_probs=85.1
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEE
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l 169 (287)
-+++||+.+.+++|++.|++++++|+-+...+..+. +.+|+++. ++ .. .|+-..+..+.++-..+-+.
T Consensus 444 D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA-~elGId~v----~A-----~~--~PedK~~iV~~lQ~~G~~Va 511 (679)
T PRK01122 444 DIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIA-AEAGVDDF----LA-----EA--TPEDKLALIRQEQAEGRLVA 511 (679)
T ss_pred ccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCcEE----Ec-----cC--CHHHHHHHHHHHHHcCCeEE
Confidence 378999999999999999999999999999999888 88898543 22 11 35556677777776677799
Q ss_pred EEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeC--CccCcC
Q 023109 170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN--SLLDLR 215 (287)
Q Consensus 170 ~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~--~l~el~ 215 (287)
|+||+.||.++.++|.+..++. ++ .+-.++.+|.+.- ++..+.
T Consensus 512 MtGDGvNDAPALa~ADVGIAMg-sG--TdvAkeAADiVLldd~~s~Iv 556 (679)
T PRK01122 512 MTGDGTNDAPALAQADVGVAMN-SG--TQAAKEAGNMVDLDSNPTKLI 556 (679)
T ss_pred EECCCcchHHHHHhCCEeEEeC-CC--CHHHHHhCCEEEeCCCHHHHH
Confidence 9999999999999999777766 32 3444566776663 444443
No 160
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.21 E-value=5.7e-06 Score=77.77 Aligned_cols=112 Identities=21% Similarity=0.206 Sum_probs=84.3
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEE
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l 169 (287)
-+++|++.+.+++|++.|++++++|+-++..++.+. +.+|+++++.. .. |+-..+..+++.-....+.
T Consensus 536 D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA-~~lGId~v~Ae---------ll--PedK~~~V~~l~~~g~~Va 603 (713)
T COG2217 536 DELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIA-KELGIDEVRAE---------LL--PEDKAEIVRELQAEGRKVA 603 (713)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcChHhhecc---------CC--cHHHHHHHHHHHhcCCEEE
Confidence 478999999999999999999999999999999888 88998544332 22 3344566667766667899
Q ss_pred EEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEe--CCccCcCc
Q 023109 170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRP 216 (287)
Q Consensus 170 ~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~--~~l~el~~ 216 (287)
||||+.||.++...|-+..++... .+-..+.+|.++ +++..+..
T Consensus 604 mVGDGINDAPALA~AdVGiAmG~G---tDvA~eaADvvL~~~dL~~v~~ 649 (713)
T COG2217 604 MVGDGINDAPALAAADVGIAMGSG---TDVAIEAADVVLMRDDLSAVPE 649 (713)
T ss_pred EEeCCchhHHHHhhcCeeEeecCC---cHHHHHhCCEEEecCCHHHHHH
Confidence 999999999999999976666652 333345566555 44555543
No 161
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.17 E-value=5.7e-05 Score=62.36 Aligned_cols=91 Identities=12% Similarity=0.124 Sum_probs=54.7
Q ss_pred ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHH---HHHHHHhhcCCccccceeeccCCcC-CCCCCHHHH---HHHHHH
Q 023109 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVR-TGKPSPDIF---LEAAKR 160 (287)
Q Consensus 88 ~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~---~~~~l~~~~gl~~~fd~i~~~~~~~-~~kp~~~~~---~~~~~~ 160 (287)
...+..|++.++.+.+++.|++|+++|+.+... ..+-| ...|+..+ +.++-.+... ..+...... ++.+..
T Consensus 142 ~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL-~kaGy~~~-~~LiLR~~~D~~~~~av~yKs~~R~~li~ 219 (275)
T TIGR01680 142 GEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANL-KKAGYHTW-EKLILKDPQDNSAENAVEYKTAARAKLIQ 219 (275)
T ss_pred ccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHH-HHcCCCCc-ceeeecCCCCCccchhHHHHHHHHHHHHH
Confidence 467899999999999999999999999997644 33344 45566543 5555443221 112111111 111122
Q ss_pred cCCCCCcEEEEeCCHhhHHHHH
Q 023109 161 LNMEPSSSLVIEDSVIGVVAGK 182 (287)
Q Consensus 161 l~~~~~~~l~iGDs~~Dv~~a~ 182 (287)
-|.. =+..|||..+|+.+..
T Consensus 220 eGYr--Iv~~iGDq~sDl~G~~ 239 (275)
T TIGR01680 220 EGYN--IVGIIGDQWNDLKGEH 239 (275)
T ss_pred cCce--EEEEECCCHHhccCCC
Confidence 2222 3467899999985433
No 162
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=98.16 E-value=2.5e-06 Score=65.88 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=59.4
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCC-ccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCc
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW-NESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl-~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~ 167 (287)
.+..+||+.+||+.+.+. +.+++.|.++..+++.++ +.+.- ...|+.+++.+.+...+.. . .+-+..++.+.++
T Consensus 34 ~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~-~~ldp~~~~~~~~~~r~~~~~~~~~-~--~KdL~~l~~~~~~ 108 (159)
T PF03031_consen 34 YVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVL-DALDPNGKLFSRRLYRDDCTFDKGS-Y--IKDLSKLGRDLDN 108 (159)
T ss_dssp EEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHH-HHHTTTTSSEEEEEEGGGSEEETTE-E--E--GGGSSS-GGG
T ss_pred eEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHH-Hhhhhhccccccccccccccccccc-c--ccchHHHhhcccc
Confidence 456789999999999666 999999999999999999 77665 4678888877655322221 0 2556777778899
Q ss_pred EEEEeCCHhhH
Q 023109 168 SLVIEDSVIGV 178 (287)
Q Consensus 168 ~l~iGDs~~Dv 178 (287)
+++|+|++.-.
T Consensus 109 vvivDD~~~~~ 119 (159)
T PF03031_consen 109 VVIVDDSPRKW 119 (159)
T ss_dssp EEEEES-GGGG
T ss_pred EEEEeCCHHHe
Confidence 99999998643
No 163
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.15 E-value=1.2e-05 Score=67.12 Aligned_cols=45 Identities=16% Similarity=0.011 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHcCCC--CCcEEEEeCCHhhHHHHHHcCCeEEEE
Q 023109 147 GKPSPDIFLEAAKRLNME--PSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (287)
Q Consensus 147 ~kp~~~~~~~~~~~l~~~--~~~~l~iGDs~~Dv~~a~~aG~~~i~v 191 (287)
..+|....+.+.+.+... +-.++.+|||+||++|.+.+-+++++-
T Consensus 206 ~~dKg~A~~~L~~~y~~~~~~~~tiaLGDspND~~mLe~~D~~vvi~ 252 (302)
T PRK12702 206 SLPGEQAVQLLLDCYQRHLGPIKALGIGCSPPDLAFLRWSEQKVVLP 252 (302)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEEecCChhhHHHHHhCCeeEEec
Confidence 456677777777776643 338999999999999999999887763
No 164
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=98.14 E-value=0.00012 Score=60.72 Aligned_cols=102 Identities=15% Similarity=0.235 Sum_probs=72.8
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHH--hhcCCcccccee-------e--------------ccCC--c
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWNESFSVI-------V--------------GSDE--V 144 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~--~~~gl~~~fd~i-------~--------------~~~~--~ 144 (287)
-..-+++.++++.+..+|+++..+|.....+....++ ..+|+. |+.- + ..++ .
T Consensus 80 ~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~--fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlf 157 (252)
T PF11019_consen 80 ELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGID--FSSSSFPEDGIISFPVFDSALSRAPSFYDGILF 157 (252)
T ss_pred EEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCC--ccccccccCcceecccccCCCCCCceeecCeEE
Confidence 3456889999999999999999999998776655442 334543 1111 0 0000 1
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHH----HHHcCCeEEEECC
Q 023109 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA----GKAAGMEVVAVPS 193 (287)
Q Consensus 145 ~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~----a~~aG~~~i~v~~ 193 (287)
..+-++++.+...+...|..|+.++||+|+..++.. ++..|+...++.-
T Consensus 158 t~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Y 210 (252)
T PF11019_consen 158 TGGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHY 210 (252)
T ss_pred eCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEE
Confidence 245567899999999999999999999999977765 4446777776654
No 165
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.11 E-value=7.3e-06 Score=78.66 Aligned_cols=111 Identities=18% Similarity=0.150 Sum_probs=83.4
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCc----------------------CCCC
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV----------------------RTGK 148 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~----------------------~~~k 148 (287)
+++|++.+.+++|++.|+++.++|+-+...+..+. +..|+.+. ++.+++. ...+
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA-~~lGI~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr 517 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETA-RRLGLGTN---IYTADVLLKGDNRDDLPSGELGEMVEDADGFAE 517 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCCC---CcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEe
Confidence 78999999999999999999999999999999888 88898541 1111111 1122
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEe
Q 023109 149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI 208 (287)
Q Consensus 149 p~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~ 208 (287)
-.|+-..++.+.++-..+-+.|+||+.||.++.+.|.+..++. ++ .+-.+..+|.++
T Consensus 518 ~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm~-~g--tdvAkeaADivL 574 (755)
T TIGR01647 518 VFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAVA-GA--TDAARSAADIVL 574 (755)
T ss_pred cCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEec-CC--cHHHHHhCCEEE
Confidence 3456666777777777788999999999999999999877764 22 333456677666
No 166
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=98.08 E-value=1.1e-05 Score=79.39 Aligned_cols=122 Identities=14% Similarity=0.035 Sum_probs=87.6
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCc----------------CCCCCCHHHH
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV----------------RTGKPSPDIF 154 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~----------------~~~kp~~~~~ 154 (287)
+++|++.+.++.|++.|++++++|+-+...+..+. +..|+...-..++.+++. -...-.|+-.
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA-~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K 657 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIA-RNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDK 657 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHH-HHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHH
Confidence 78899999999999999999999999999999888 888985321222222211 1123345566
Q ss_pred HHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeC--CccCcC
Q 023109 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN--SLLDLR 215 (287)
Q Consensus 155 ~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~--~l~el~ 215 (287)
.++.+.+.-..+-+.|+||+.||.++.++|.+..++..++ .+-.+..+|.++. ++..+.
T Consensus 658 ~~iV~~lq~~g~vVam~GDGvNDapALk~AdVGIAmg~~g--tdvAk~aADivL~dd~f~~I~ 718 (941)
T TIGR01517 658 QLLVLMLKDMGEVVAVTGDGTNDAPALKLADVGFSMGISG--TEVAKEASDIILLDDNFASIV 718 (941)
T ss_pred HHHHHHHHHCCCEEEEECCCCchHHHHHhCCcceecCCCc--cHHHHHhCCEEEecCCHHHHH
Confidence 6677777666678999999999999999999777654232 2334667788876 444443
No 167
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=98.06 E-value=1.4e-05 Score=77.87 Aligned_cols=122 Identities=11% Similarity=0.080 Sum_probs=88.0
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCc----------------CCCCCCHHH
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV----------------RTGKPSPDI 153 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~----------------~~~kp~~~~ 153 (287)
-+++|++.+.+++|++.|+++.++|+-+...+..+. +..|+.. +.++.+.+. ....-.|+-
T Consensus 514 Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA-~~lGI~~--~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~ 590 (867)
T TIGR01524 514 DPPKESTKEAIAALFKNGINVKVLTGDNEIVTARIC-QEVGIDA--NDFLLGADIEELSDEELARELRKYHIFARLTPMQ 590 (867)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCC--CCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHH
Confidence 368999999999999999999999999999998888 8889852 122222111 112234556
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEe--CCccCcCcc
Q 023109 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRPE 217 (287)
Q Consensus 154 ~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~--~~l~el~~~ 217 (287)
..++.+.+.-..+.+.|+||+.||.++.+.|.+..++. ++ .+-.+..+|.++ +++..+...
T Consensus 591 K~~iV~~lq~~G~vVam~GDGvNDapALk~AdVGIAmg-~g--tdvAk~aADiVLldd~~~~I~~a 653 (867)
T TIGR01524 591 KSRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISVD-TA--ADIAKEASDIILLEKSLMVLEEG 653 (867)
T ss_pred HHHHHHHHHhCCCEEEEECCCcccHHHHHhCCEEEEeC-Cc--cHHHHHhCCEEEecCChHHHHHH
Confidence 66677777666778999999999999999999877765 32 334466777777 445554443
No 168
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=98.05 E-value=1.2e-05 Score=78.39 Aligned_cols=122 Identities=15% Similarity=0.122 Sum_probs=89.9
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcC----------------CCCCCHHH
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----------------TGKPSPDI 153 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~----------------~~kp~~~~ 153 (287)
-+++|++.+.+++|++.|+++.++|+-+...+..+. +.+|+.. +.++.+.+.. ...-.|+-
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA-~~lGI~~--~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~ 625 (902)
T PRK10517 549 DPPKETTAPALKALKASGVTVKILTGDSELVAAKVC-HEVGLDA--GEVLIGSDIETLSDDELANLAERTTLFARLTPMH 625 (902)
T ss_pred CcchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCc--cCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHH
Confidence 367899999999999999999999999999999888 8889842 2333322211 12334566
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEe--CCccCcCcc
Q 023109 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRPE 217 (287)
Q Consensus 154 ~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~--~~l~el~~~ 217 (287)
..++.+.+.-..+-+.|+||+.||.++.++|.+..++. ++ .+-.+..+|.++ +++..+...
T Consensus 626 K~~IV~~Lq~~G~vVam~GDGvNDaPALk~ADVGIAmg-~g--tdvAkeaADiVLldd~~~~I~~a 688 (902)
T PRK10517 626 KERIVTLLKREGHVVGFMGDGINDAPALRAADIGISVD-GA--VDIAREAADIILLEKSLMVLEEG 688 (902)
T ss_pred HHHHHHHHHHCCCEEEEECCCcchHHHHHhCCEEEEeC-Cc--CHHHHHhCCEEEecCChHHHHHH
Confidence 67777777767778999999999999999999777765 32 334467778777 455555443
No 169
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=98.04 E-value=2e-05 Score=77.00 Aligned_cols=122 Identities=16% Similarity=0.103 Sum_probs=90.3
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcC----------------CCCCCHHHH
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----------------TGKPSPDIF 154 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~----------------~~kp~~~~~ 154 (287)
|++|++.+.+++|++.|+++.++|+-+...+..+. +.+|+.. +.++.+.+.. ...-.|+-.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA-~~lGI~~--~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K 626 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKIC-REVGLEP--GEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQK 626 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCC--CCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHH
Confidence 78899999999999999999999999999999888 8889852 2222222211 122356666
Q ss_pred HHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEe--CCccCcCccc
Q 023109 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRPEK 218 (287)
Q Consensus 155 ~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~--~~l~el~~~~ 218 (287)
.++.+.+.-..+-+.|+||+.||.++.+.|.+..++. ++ .+-.+..+|.++ +++..+...+
T Consensus 627 ~~iV~~Lq~~G~vVamtGDGvNDaPALk~ADVGIAmg-~g--tdvAkeaADiVLldd~f~~Iv~ai 689 (903)
T PRK15122 627 SRVLKALQANGHTVGFLGDGINDAPALRDADVGISVD-SG--ADIAKESADIILLEKSLMVLEEGV 689 (903)
T ss_pred HHHHHHHHhCCCEEEEECCCchhHHHHHhCCEEEEeC-cc--cHHHHHhcCEEEecCChHHHHHHH
Confidence 7777777777778999999999999999999777665 32 333467778777 5555554443
No 170
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=98.00 E-value=5.3e-05 Score=57.73 Aligned_cols=92 Identities=18% Similarity=0.236 Sum_probs=63.1
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCCChHH---HHHHHHhhcCCccccceeeccCCcCCCCCCHHHH--HHHHHHcCCCCCc
Q 023109 93 LPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIF--LEAAKRLNMEPSS 167 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~~~~~---~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~--~~~~~~l~~~~~~ 167 (287)
.+-+++++.-..++|-.++.+|+.++.. +...+++.+.+......++.+| ||+|.-+ ...+..-++.
T Consensus 116 KevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gd-----k~k~~qy~Kt~~i~~~~~~--- 187 (237)
T COG3700 116 KEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGD-----KPKPGQYTKTQWIQDKNIR--- 187 (237)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccC-----CCCcccccccHHHHhcCce---
Confidence 3456678888888999999999886644 3345556666765555555544 2333222 3345544444
Q ss_pred EEEEeCCHhhHHHHHHcCCeEEEECC
Q 023109 168 SLVIEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 168 ~l~iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
++.|||-+|+-+|+.+|.+.+-+-+
T Consensus 188 -IhYGDSD~Di~AAkeaG~RgIRilR 212 (237)
T COG3700 188 -IHYGDSDNDITAAKEAGARGIRILR 212 (237)
T ss_pred -EEecCCchhhhHHHhcCccceeEEe
Confidence 8999999999999999998877655
No 171
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=98.00 E-value=2.3e-05 Score=77.68 Aligned_cols=123 Identities=11% Similarity=0.081 Sum_probs=88.7
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcccc----------ceeeccCCcC--------------
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF----------SVIVGSDEVR-------------- 145 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~f----------d~i~~~~~~~-------------- 145 (287)
-+++|++.+.++.+++.|++++++|+.+...+..+. +..|+.... +.++++.+..
T Consensus 645 Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA-~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~ 723 (1053)
T TIGR01523 645 DPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIA-QEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALC 723 (1053)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcC
Confidence 378999999999999999999999999999999888 888985320 1233322111
Q ss_pred --CCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCC--ccCcC
Q 023109 146 --TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINS--LLDLR 215 (287)
Q Consensus 146 --~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~--l~el~ 215 (287)
...-.|+-...+.+.+.-..+-+.|+||+.||.++.+.|.+.+++..++ .+..+..+|.++.+ +..+.
T Consensus 724 ~V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIAmg~~g--t~vak~aADivl~dd~f~~I~ 795 (1053)
T TIGR01523 724 LVIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAMGING--SDVAKDASDIVLSDDNFASIL 795 (1053)
T ss_pred eEEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEecCCCc--cHHHHHhcCEEEecCCHHHHH
Confidence 1233456666677777666778999999999999999999777764332 23346677888854 44443
No 172
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.94 E-value=2.1e-05 Score=75.47 Aligned_cols=67 Identities=15% Similarity=-0.004 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccCcCcc
Q 023109 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE 217 (287)
Q Consensus 145 ~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~~ 217 (287)
..+..|..+++.+++ +.+++.+++|||+.||..|.+.++.....+..+. ....|++++++..++...
T Consensus 653 p~~vnKG~al~~ll~--~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~----~~s~A~~~l~~~~eV~~~ 719 (726)
T PRK14501 653 PAGVNKGRAVRRLLE--AGPYDFVLAIGDDTTDEDMFRALPETAITVKVGP----GESRARYRLPSQREVREL 719 (726)
T ss_pred ECCCCHHHHHHHHHh--cCCCCEEEEECCCCChHHHHHhcccCceEEEECC----CCCcceEeCCCHHHHHHH
Confidence 344556778888887 7788999999999999999999742112222221 135678888887775443
No 173
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.94 E-value=3.2e-05 Score=75.69 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=82.9
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccc--eeeccCCcC----------------CCCCC
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS--VIVGSDEVR----------------TGKPS 150 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd--~i~~~~~~~----------------~~kp~ 150 (287)
.-|+++++.+.++.|+++|+++.++|+-+...+..+. +..|+...-+ .++.+.+.. ..+-.
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa-~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvs 623 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDHVETAIAIA-KECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVS 623 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHH-HHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcC
Confidence 3589999999999999999999999999999999888 8888765432 244433211 22335
Q ss_pred HHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCC
Q 023109 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (287)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~ 194 (287)
|+-..++.+.++-...-+.|.||+.||++|.+.|.+.+.++..|
T Consensus 624 P~qK~~IV~~lq~~g~vVamtGDGvNDapALk~ADVGIamg~~G 667 (917)
T COG0474 624 PEQKARIVEALQKSGHVVAMTGDGVNDAPALKAADVGIAMGGEG 667 (917)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCchhHHHHHhcCccEEecccH
Confidence 66777777888777888999999999999999999888777643
No 174
>PLN02645 phosphoglycolate phosphatase
Probab=97.88 E-value=0.00015 Score=62.46 Aligned_cols=90 Identities=18% Similarity=0.163 Sum_probs=69.3
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCC---hHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCc
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSH---RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~---~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~ 167 (287)
.+.||+.++|++++++|++++++||++ .......+ +.+|+...++.++++. ......++..+.....
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l-~~lGi~~~~~~I~ts~---------~~~~~~l~~~~~~~~~ 113 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF-ESLGLNVTEEEIFSSS---------FAAAAYLKSINFPKDK 113 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH-HHCCCCCChhhEeehH---------HHHHHHHHhhccCCCC
Confidence 357899999999999999999999987 34444456 6788877777777653 2345556666655556
Q ss_pred EEEEeCCHhhHHHHHHcCCeEEE
Q 023109 168 SLVIEDSVIGVVAGKAAGMEVVA 190 (287)
Q Consensus 168 ~l~iGDs~~Dv~~a~~aG~~~i~ 190 (287)
.+|++++..+...++.+|+.++.
T Consensus 114 ~V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 114 KVYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred EEEEEcCHHHHHHHHHCCCEEec
Confidence 78999999999999999998765
No 175
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=7.1e-05 Score=56.41 Aligned_cols=96 Identities=16% Similarity=0.080 Sum_probs=59.6
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCC-ccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCc
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW-NESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl-~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~ 167 (287)
+..+..++...|..+++. .+++.+|+..+...+..- ..+-. .-.+|.+...+.. .| -.+.+..+++
T Consensus 70 e~l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~-~~l~~q~ih~~~l~i~g~h--~K------V~~vrth~id--- 136 (194)
T COG5663 70 EALLAQLVKQVLPSLKEE-HRLIYITARKADLTRITY-AWLFIQNIHYDHLEIVGLH--HK------VEAVRTHNID--- 136 (194)
T ss_pred HHHHHHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHH-HHHHHhccchhhhhhhccc--cc------chhhHhhccC---
Confidence 344556788888888887 578888877555433222 11111 1124443322211 11 3455666666
Q ss_pred EEEEeCCH-hhHHHHHHcCCeEEEECCCCCcc
Q 023109 168 SLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT 198 (287)
Q Consensus 168 ~l~iGDs~-~Dv~~a~~aG~~~i~v~~~~~~~ 198 (287)
+++.|+. |-.+.|+++|++++.+++.+.+.
T Consensus 137 -lf~ed~~~na~~iAk~~~~~vilins~ynRk 167 (194)
T COG5663 137 -LFFEDSHDNAGQIAKNAGIPVILINSPYNRK 167 (194)
T ss_pred -ccccccCchHHHHHHhcCCcEEEecCccccc
Confidence 7889998 78888999999999999966544
No 176
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=97.83 E-value=5.6e-05 Score=74.83 Aligned_cols=117 Identities=15% Similarity=0.091 Sum_probs=84.4
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcccc------------------------ceeeccCCc--
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF------------------------SVIVGSDEV-- 144 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~f------------------------d~i~~~~~~-- 144 (287)
|++|++.+.+++++++|++++++|+.+...+.... +..|+...- ..++.+.+.
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia-~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~ 646 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIA-KGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKD 646 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhh
Confidence 77899999999999999999999999999998888 777873210 012222211
Q ss_pred ----------------CCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEe
Q 023109 145 ----------------RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI 208 (287)
Q Consensus 145 ----------------~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~ 208 (287)
-..+-.|+-..++.+.+.-..+-+.++||+.||+++.+.|.+..++..+|. +-.+..+|.++
T Consensus 647 l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiamg~~G~--~vak~aADivL 724 (997)
T TIGR01106 647 MTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGS--DVSKQAADMIL 724 (997)
T ss_pred CCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceecCCccc--HHHHHhhceEE
Confidence 113335566666666666666779999999999999999997777654432 22356678877
Q ss_pred CC
Q 023109 209 NS 210 (287)
Q Consensus 209 ~~ 210 (287)
.+
T Consensus 725 ~d 726 (997)
T TIGR01106 725 LD 726 (997)
T ss_pred ec
Confidence 65
No 177
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=97.81 E-value=1.1e-05 Score=57.91 Aligned_cols=43 Identities=30% Similarity=0.642 Sum_probs=37.2
Q ss_pred cCCCCCCCceeeccceeeeccCccccchhHh------HHHhhccCCCcc
Q 023109 229 EGTLPSEPWYIGGPVVKGLGRGSKLICLQRV------IQMSFQNIPRGS 271 (287)
Q Consensus 229 ~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~ 271 (287)
.+..+..|++..|++.+||+|+|++|||||| ++....++|.|-
T Consensus 5 ~~~~~~~P~~~~g~VVrGFGRGskeLGiPTAN~~~~~v~~l~~~l~~Gv 53 (153)
T KOG3110|consen 5 AQPMSPLPLFFGGEVVRGFGRGSKELGIPTANFPENVVPKLPEDLPSGV 53 (153)
T ss_pred cccCCCCCEEecCeEEEecCCCccccCCccCCCCHHHHhcccccCCCce
Confidence 3577888999999999999999999999999 777777777773
No 178
>PTZ00174 phosphomannomutase; Provisional
Probab=97.80 E-value=3.9e-05 Score=63.78 Aligned_cols=29 Identities=14% Similarity=0.343 Sum_probs=22.4
Q ss_pred HHHHHHHHHCCCCEEEEeCCChHHHHHHH
Q 023109 97 NRLIKHLSCHGVPMALASNSHRATIESKI 125 (287)
Q Consensus 97 ~~~l~~l~~~g~~v~l~T~~~~~~~~~~l 125 (287)
.+.+++++++|+.++++|+++...+...+
T Consensus 28 ~~ai~~l~~~Gi~~viaTGR~~~~i~~~l 56 (247)
T PTZ00174 28 KDTLAKLKSKGFKIGVVGGSDYPKIKEQL 56 (247)
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 35677788889999999998877666555
No 179
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=97.74 E-value=0.00011 Score=68.65 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=81.8
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccc----eeeccCCcC----------------CCCC
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS----VIVGSDEVR----------------TGKP 149 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd----~i~~~~~~~----------------~~kp 149 (287)
-||++++.+.++.+++.|+++.++|+-+...+.++. +..|+...-+ ..+++.+.. ...-
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~-r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~ 661 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIA-REIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARA 661 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHH-HHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEec
Confidence 388999999999999999999999999999999988 8888754333 223332211 1223
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCC
Q 023109 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (287)
Q Consensus 150 ~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~ 194 (287)
.|....++.+.|+-..+=+.|-||+.||-++.+.|.+..++.-+|
T Consensus 662 ~P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAMG~~G 706 (972)
T KOG0202|consen 662 EPQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAMGISG 706 (972)
T ss_pred CchhHHHHHHHHHhcCCEEEecCCCccchhhhhhcccceeecCCc
Confidence 456668888888888888999999999999999999887777554
No 180
>PLN02423 phosphomannomutase
Probab=97.68 E-value=4.9e-06 Score=69.01 Aligned_cols=45 Identities=9% Similarity=-0.163 Sum_probs=35.4
Q ss_pred cCCCCCCHHHHHHHHHHcCCCCCcEEEEeC----CHhhHHHHHHcCCeEEEECC
Q 023109 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIED----SVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 144 ~~~~kp~~~~~~~~~~~l~~~~~~~l~iGD----s~~Dv~~a~~aG~~~i~v~~ 193 (287)
...+-.|..+++.++ +++++++||| +.||++|.+.-|+.++-|..
T Consensus 184 ~~~gvnKg~al~~L~-----~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~ 232 (245)
T PLN02423 184 FPQGWDKTYCLQFLE-----DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTS 232 (245)
T ss_pred eeCCCCHHHHHHHhc-----CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCC
Confidence 445555655555544 8999999999 69999999999998888866
No 181
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=97.68 E-value=0.00051 Score=55.22 Aligned_cols=87 Identities=15% Similarity=0.201 Sum_probs=57.3
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHH-HH---HHHHhhcCCccccce-eeccCCcCCCCCCHHHHHHHHHHcCC
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT-IE---SKISYQHGWNESFSV-IVGSDEVRTGKPSPDIFLEAAKRLNM 163 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~-~~---~~l~~~~gl~~~fd~-i~~~~~~~~~kp~~~~~~~~~~~l~~ 163 (287)
...+.||+.+|++..-++|..|..+||++.+. .. .-+ ...|+....+. ++-- ...+++..-+..+.+
T Consensus 120 ~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nL-k~~g~~~~~~~~~llk---k~~k~Ke~R~~~v~k---- 191 (274)
T COG2503 120 KSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENL-KSEGLPQVLESHLLLK---KDKKSKEVRRQAVEK---- 191 (274)
T ss_pred ccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHH-HHcCcccccccceEEe---eCCCcHHHHHHHHhh----
Confidence 46788999999999999999999999998776 32 334 55676544332 2221 224444333333333
Q ss_pred CCCcEEEEeCCHhhHHHHHH
Q 023109 164 EPSSSLVIEDSVIGVVAGKA 183 (287)
Q Consensus 164 ~~~~~l~iGDs~~Dv~~a~~ 183 (287)
.-+=++.|||+..|......
T Consensus 192 ~~~iVm~vGDNl~DF~d~~~ 211 (274)
T COG2503 192 DYKIVMLVGDNLDDFGDNAY 211 (274)
T ss_pred ccceeeEecCchhhhcchhh
Confidence 44568999999988755443
No 182
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=97.58 E-value=0.00015 Score=53.32 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=25.2
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCChHH
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHRAT 120 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~ 120 (287)
.+.+++.+.+++++++|+.++++|+.+...
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~ 53 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRT 53 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 456788889999999999999999987654
No 183
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.57 E-value=0.00059 Score=60.17 Aligned_cols=92 Identities=20% Similarity=0.200 Sum_probs=72.0
Q ss_pred cHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCC----cCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 023109 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE----VRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (287)
Q Consensus 95 g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~----~~~~kp~~~~~~~~~~~l~~~~~~~l~ 170 (287)
....++..++++|+-++++|-++...+...+..|- |.++--++ ..+-.|+.+-++++++.+++..+..+|
T Consensus 259 ~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~khp------~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvF 332 (574)
T COG3882 259 TFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKHP------DMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVF 332 (574)
T ss_pred HHHHHHHHHHhccEEEEEecCCchhhHHHHHhhCC------CeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEE
Confidence 44568889999999999999999988888884442 33333222 235678899999999999999999999
Q ss_pred EeCCHhhHHHHHHcCCeEEEECC
Q 023109 171 IEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 171 iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
++|++...+--++-+- +.+++-
T Consensus 333 iDD~p~ErE~vk~~~~-v~Vi~~ 354 (574)
T COG3882 333 IDDNPAERELVKRELP-VSVIEF 354 (574)
T ss_pred ecCCHHHHHHHHhcCc-eeeccC
Confidence 9999999888888875 444443
No 184
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=97.56 E-value=0.0003 Score=68.14 Aligned_cols=68 Identities=12% Similarity=-0.025 Sum_probs=47.6
Q ss_pred CCCCCHHHHHHHHH---HcCCCCCcEEEEeCCHhhHHHHHHcCC-------------eEEEECCCCCccccccCCcEEeC
Q 023109 146 TGKPSPDIFLEAAK---RLNMEPSSSLVIEDSVIGVVAGKAAGM-------------EVVAVPSLPKQTHRYTAADEVIN 209 (287)
Q Consensus 146 ~~kp~~~~~~~~~~---~l~~~~~~~l~iGDs~~Dv~~a~~aG~-------------~~i~v~~~~~~~~~~~~a~~v~~ 209 (287)
.+..|+..++++++ .+|..++.+++|||+.||..|.+.++- -++-|.. ....|.+.++
T Consensus 759 ~gvnKG~Al~~Ll~~~~~~g~~~d~vl~~GDD~nDedMF~~~~~~~~g~~~~~~~~~~~v~VG~------~~S~A~y~L~ 832 (854)
T PLN02205 759 QGVSKGLVAKRLLSIMQERGMLPDFVLCIGDDRSDEDMFEVITSSMAGPSIAPRAEVFACTVGQ------KPSKAKYYLD 832 (854)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCcccEEEEcCCccHHHHHHHhhhhccCCcccccccceeEEECC------CCccCeEecC
Confidence 45556777777764 468899999999999999999998862 2222322 1345677788
Q ss_pred CccCcCcccc
Q 023109 210 SLLDLRPEKW 219 (287)
Q Consensus 210 ~l~el~~~~~ 219 (287)
+..++...+.
T Consensus 833 d~~eV~~lL~ 842 (854)
T PLN02205 833 DTAEIVRLMQ 842 (854)
T ss_pred CHHHHHHHHH
Confidence 8877765543
No 185
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=97.54 E-value=0.00043 Score=54.89 Aligned_cols=39 Identities=15% Similarity=0.079 Sum_probs=34.6
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCC
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl 131 (287)
-.+|++.+||+.+.+. +.++|.|+++..+++.++ ..+++
T Consensus 45 ~kRP~l~eFL~~~~~~-feIvVwTAa~~~ya~~~l-~~l~~ 83 (195)
T TIGR02245 45 LMRPYLHEFLTSAYED-YDIVIWSATSMKWIEIKM-TELGV 83 (195)
T ss_pred EeCCCHHHHHHHHHhC-CEEEEEecCCHHHHHHHH-HHhcc
Confidence 4689999999999885 999999999999999999 76664
No 186
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.00034 Score=66.10 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=82.4
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEE
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l 169 (287)
-+++|++...++.|++.|++++++|+-+...+++.. +..| ++.|++ + .+|. -.....+.+......+.
T Consensus 722 D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA-~~VG----i~~V~a-e----v~P~--~K~~~Ik~lq~~~~~Va 789 (951)
T KOG0207|consen 722 DQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVA-QQVG----IDNVYA-E----VLPE--QKAEKIKEIQKNGGPVA 789 (951)
T ss_pred cccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHH-HhhC----cceEEe-c----cCch--hhHHHHHHHHhcCCcEE
Confidence 368999999999999999999999999999999888 7777 466654 2 2332 22445556665667899
Q ss_pred EEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEe--CCccCcCcc
Q 023109 170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRPE 217 (287)
Q Consensus 170 ~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~--~~l~el~~~ 217 (287)
||||+.||-++...|.+..+.... .+-..+.+|.+. +++.++...
T Consensus 790 MVGDGINDaPALA~AdVGIaig~g---s~vAieaADIVLmrn~L~~v~~a 836 (951)
T KOG0207|consen 790 MVGDGINDAPALAQADVGIAIGAG---SDVAIEAADIVLMRNDLRDVPFA 836 (951)
T ss_pred EEeCCCCccHHHHhhccceeeccc---cHHHHhhCCEEEEccchhhhHHH
Confidence 999999999999999876665544 222334555544 566665544
No 187
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=97.52 E-value=0.00062 Score=57.51 Aligned_cols=103 Identities=15% Similarity=0.203 Sum_probs=74.3
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhc---CCccccceeeccCCcC-----CCCCC-----------
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH---GWNESFSVIVGSDEVR-----TGKPS----------- 150 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~---gl~~~fd~i~~~~~~~-----~~kp~----------- 150 (287)
+...|...++|+.|+++|.++.++||++.+.++.-+ +.+ .+.+.||.|+.--+-+ ..+|-
T Consensus 239 i~r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM-~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~ 317 (510)
T KOG2470|consen 239 IERNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGM-RFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLL 317 (510)
T ss_pred hhccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCc-eeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchh
Confidence 456788999999999999999999999999988665 332 3556789887532110 01110
Q ss_pred --------------HHHHHHHHHHcCCCCCcEEEEeCCH-hhHHHHH-HcCCeEEEECC
Q 023109 151 --------------PDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGK-AAGMEVVAVPS 193 (287)
Q Consensus 151 --------------~~~~~~~~~~l~~~~~~~l~iGDs~-~Dv~~a~-~aG~~~i~v~~ 193 (287)
...+...++.-|....+++|+||++ +|+.... ..|+++..+-.
T Consensus 318 wdkv~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~ 376 (510)
T KOG2470|consen 318 WDKVDKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIP 376 (510)
T ss_pred hhhhhhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccchH
Confidence 0113445666788899999999999 7998887 88887766543
No 188
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.49 E-value=0.00057 Score=56.42 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=43.9
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccC
Q 023109 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD 142 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~ 142 (287)
.|.+.+.|.+|++.|..+++=|-++++++...+ +..++.++||.+++..
T Consensus 144 ~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl-~~~~L~~~Fd~ii~~G 192 (297)
T PF05152_consen 144 DPAVYDSLRELKEQGCVLVLWSYGNREHVRHSL-KELKLEGYFDIIICGG 192 (297)
T ss_pred ChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHH-HHhCCccccEEEEeCC
Confidence 456678899999999999999999999999999 8889999999998764
No 189
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.47 E-value=0.00013 Score=58.63 Aligned_cols=47 Identities=21% Similarity=0.152 Sum_probs=42.9
Q ss_pred cCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEE
Q 023109 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 190 (287)
Q Consensus 144 ~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~ 190 (287)
.+.+.+|+..++.+++.++++++++++|||+.||+.+++.+|+.+++
T Consensus 158 ~p~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~vam 204 (204)
T TIGR01484 158 LPAGVDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAVAV 204 (204)
T ss_pred ecCCCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCceEC
Confidence 45678899999999999999999999999999999999999987764
No 190
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.43 E-value=0.00046 Score=60.36 Aligned_cols=100 Identities=17% Similarity=0.117 Sum_probs=84.6
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCC--ChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcE
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNS--HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~--~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~ 168 (287)
-+.....++.+.+.+.|.+|+++|+. +.+..+..+ ..+|.+..--.++.|.+....|.++..|..+++.-+++|...
T Consensus 99 ypn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L-~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~EnVd~~~w 177 (635)
T COG5610 99 YPNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFL-NSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLENVDPKKW 177 (635)
T ss_pred eccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHH-HhcCCCccCceeeecceeehhcccchHHHHHHhhcCCChhhe
Confidence 45566788999999999999999998 666677777 777765443446788888889999999999999999999999
Q ss_pred EEEeCCH-hhHHHHHHcCCeEEEE
Q 023109 169 LVIEDSV-IGVVAGKAAGMEVVAV 191 (287)
Q Consensus 169 l~iGDs~-~Dv~~a~~aG~~~i~v 191 (287)
+++||+. .|..+++..|+.|...
T Consensus 178 ~H~GDN~~aD~l~pk~LgI~Tlf~ 201 (635)
T COG5610 178 IHCGDNWVADYLKPKNLGISTLFY 201 (635)
T ss_pred EEecCchhhhhcCccccchhHHHH
Confidence 9999999 7999999999887654
No 191
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=97.38 E-value=0.0017 Score=64.88 Aligned_cols=103 Identities=13% Similarity=0.074 Sum_probs=74.8
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceee------------------------------
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIV------------------------------ 139 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~------------------------------ 139 (287)
-++.|++.+.++++++.|++++++|+.+...+..+. +..|+...-+.++
T Consensus 655 d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA-~~~gii~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1054)
T TIGR01657 655 NPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVA-RECGIVNPSNTLILAEAEPPESGKPNQIKFEVIDSIPFASTQV 733 (1054)
T ss_pred cCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCCCCceEEEeecccccCCCCceEEEEecCccccccccc
Confidence 478999999999999999999999999999999888 7888742211111
Q ss_pred -----------------------ccCCc-------------------CCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhh
Q 023109 140 -----------------------GSDEV-------------------RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG 177 (287)
Q Consensus 140 -----------------------~~~~~-------------------~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~D 177 (287)
++++. -..+-.|+-...+.+.+.-...-+.|+||+.||
T Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~itG~~l~~l~~~~~~~l~~~~~~~~VfAR~sP~qK~~iV~~lq~~g~~V~m~GDG~ND 813 (1054)
T TIGR01657 734 EIPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFARMAPDQKETLVELLQKLDYTVGMCGDGAND 813 (1054)
T ss_pred cccCcccccchhhhcccceEEEEEcHHHHHHHHhhHHHHHHHHhcCeEEEecCHHHHHHHHHHHHhCCCeEEEEeCChHH
Confidence 11000 001223455555666666666789999999999
Q ss_pred HHHHHHcCCeEEEECC
Q 023109 178 VVAGKAAGMEVVAVPS 193 (287)
Q Consensus 178 v~~a~~aG~~~i~v~~ 193 (287)
+.+.++|.+...+...
T Consensus 814 ~~ALK~AdVGIam~~~ 829 (1054)
T TIGR01657 814 CGALKQADVGISLSEA 829 (1054)
T ss_pred HHHHHhcCcceeeccc
Confidence 9999999977777544
No 192
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=97.36 E-value=0.0042 Score=55.79 Aligned_cols=87 Identities=11% Similarity=0.021 Sum_probs=50.2
Q ss_pred HHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCC--------cC--CCCCCHHH-HHHHHHHcCCCCCc
Q 023109 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE--------VR--TGKPSPDI-FLEAAKRLNMEPSS 167 (287)
Q Consensus 99 ~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~--------~~--~~kp~~~~-~~~~~~~l~~~~~~ 167 (287)
..+..++.| +++++|++++.+++..+++++|. |.|++.+- .+ .++.-.+. ...+.+.++ +...
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~----D~VvGTEL~v~~~G~~TG~~~G~n~~ek~~~rl~~~~g-~~~~ 174 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRA----DEVIGSELVVNRFGFATGFIRGTDVDQSVANRVANLFV-DERP 174 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCC----ceEEeeeEEEeeccEEEEEEecCccHHHHHHHHHHHhC-ccCc
Confidence 455666777 99999999999999999666775 44443321 00 11111222 333444455 2234
Q ss_pred EEEEeCCHhhHHHHHHcCCeEEEECC
Q 023109 168 SLVIEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 168 ~l~iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
.+-+||+..|-.-..- |+-+++.+
T Consensus 175 ~vg~~~~~~~~~f~~~--ck~~~~~~ 198 (498)
T PLN02499 175 QLGLGRISASSSFLSL--CKEQIHPP 198 (498)
T ss_pred eecccCCcccchhhhh--CceEEecC
Confidence 6777887766555444 33444444
No 193
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=97.34 E-value=0.00021 Score=59.25 Aligned_cols=67 Identities=13% Similarity=-0.036 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHc-------CCeEEEECCCCCccccccCCcEEeCCccCcCcc
Q 023109 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA-------GMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE 217 (287)
Q Consensus 147 ~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~a-------G~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~~ 217 (287)
...|+..++++++.++..++.++||||+.+|+.+++.+ |..++.+..+ ..+..+++++++..++...
T Consensus 165 ~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g----~~~~~A~~~~~~~~~v~~~ 238 (244)
T TIGR00685 165 FVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSG----SKKTVAKFHLTGPQQVLEF 238 (244)
T ss_pred CCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecC----CcCCCceEeCCCHHHHHHH
Confidence 33456899999999999999999999999999999999 6666666532 2346688999988886543
No 194
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=97.24 E-value=0.0017 Score=59.75 Aligned_cols=98 Identities=17% Similarity=0.110 Sum_probs=74.2
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEE
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l 169 (287)
-++.+++.+.++++++.|++++++|+.+...+.... +.+|+ + .. -.|+-..+..+.+.-....+.
T Consensus 346 d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia-~~lgi-------~-----~~--~~p~~K~~~v~~l~~~g~~v~ 410 (499)
T TIGR01494 346 DPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIA-KELGI-------F-----AR--VTPEEKAALVEALQKKGRVVA 410 (499)
T ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCc-------e-----ec--cCHHHHHHHHHHHHHCCCEEE
Confidence 478999999999999999999999999999888877 77775 1 11 234444555555554557899
Q ss_pred EEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCC
Q 023109 170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINS 210 (287)
Q Consensus 170 ~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~ 210 (287)
++||+.||.++.+.|++...+. ....+|.++.+
T Consensus 411 ~vGDg~nD~~al~~Advgia~~--------a~~~adivl~~ 443 (499)
T TIGR01494 411 MTGDGVNDAPALKKADVGIAMG--------AKAAADIVLLD 443 (499)
T ss_pred EECCChhhHHHHHhCCCccccc--------hHHhCCeEEec
Confidence 9999999999999999765543 23446666654
No 195
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.22 E-value=0.0029 Score=48.15 Aligned_cols=90 Identities=23% Similarity=0.286 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHHHHCCCCEEEEeCCChHHHH---HHHHhhc-----CCccccce-eecc-C--------CcCCCCCCHHH
Q 023109 92 ALPGANRLIKHLSCHGVPMALASNSHRATIE---SKISYQH-----GWNESFSV-IVGS-D--------EVRTGKPSPDI 153 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~---~~l~~~~-----gl~~~fd~-i~~~-~--------~~~~~kp~~~~ 153 (287)
..+|+.++.+.+++.|+++.-+|+.+-..+. ..+ ... ++. ++ ++.+ + ++-.. +|+.
T Consensus 28 ~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L-~~~~q~~~~lP---~Gpv~~sP~~l~~al~rEvi~~--~p~~ 101 (157)
T PF08235_consen 28 THPGAAELYRKIADNGYKILYLTARPIGQANRTRSWL-AQHQQQGHNLP---DGPVLLSPDSLFSALHREVISK--DPEE 101 (157)
T ss_pred hhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHH-HHHHhCCccCC---CCCEEECCcchhhhhhcccccc--ChHH
Confidence 4579999999999999999999999754433 333 222 232 22 1111 1 22222 3444
Q ss_pred HHH-HHHHc-CCCC----CcEEEEeCCHhhHHHHHHcCCe
Q 023109 154 FLE-AAKRL-NMEP----SSSLVIEDSVIGVVAGKAAGME 187 (287)
Q Consensus 154 ~~~-~~~~l-~~~~----~~~l~iGDs~~Dv~~a~~aG~~ 187 (287)
|+. .++.+ ...| .=...+|++.+|+.+=+++|++
T Consensus 102 fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 102 FKIACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 332 33333 2211 2345579999999999999985
No 196
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=97.21 E-value=0.00034 Score=69.93 Aligned_cols=127 Identities=15% Similarity=0.119 Sum_probs=82.9
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccc--------------------------------
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-------------------------------- 136 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd-------------------------------- 136 (287)
+-++.+|+.+.++.|++.|++++++|+-....+..+. ...|+...=.
T Consensus 629 eD~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA-~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~ 707 (1057)
T TIGR01652 629 EDKLQEGVPETIELLRQAGIKIWVLTGDKVETAINIG-YSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFN 707 (1057)
T ss_pred hhhhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHH-HHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhh
Confidence 3488999999999999999999999999888888777 5556532110
Q ss_pred ---------eeeccCCc----------------------CCCCCCHHHHHHHHHHcCCC-CCcEEEEeCCHhhHHHHHHc
Q 023109 137 ---------VIVGSDEV----------------------RTGKPSPDIFLEAAKRLNME-PSSSLVIEDSVIGVVAGKAA 184 (287)
Q Consensus 137 ---------~i~~~~~~----------------------~~~kp~~~~~~~~~~~l~~~-~~~~l~iGDs~~Dv~~a~~a 184 (287)
-++.++.. -..+-.|+-..++.+.+.-. ..-++++||+.||+.|.++|
T Consensus 708 ~~~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~~~~vl~iGDG~ND~~mlk~A 787 (1057)
T TIGR01652 708 NLGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKSTGKTTLAIGDGANDVSMIQEA 787 (1057)
T ss_pred hhccCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHhhc
Confidence 01221100 01122333334444444443 56899999999999999999
Q ss_pred CCeEEEECCCCCccccccCCcEEeCCccCcCccc
Q 023109 185 GMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218 (287)
Q Consensus 185 G~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~~~ 218 (287)
.+.+ .+.. .........+|+++.++..+.+.+
T Consensus 788 dVGI-gi~g-~eg~qA~~aaD~~i~~F~~L~~ll 819 (1057)
T TIGR01652 788 DVGV-GISG-KEGMQAVMASDFAIGQFRFLTKLL 819 (1057)
T ss_pred Ceee-EecC-hHHHHHHHhhhhhhhhHHHHHHHH
Confidence 8666 2222 222234567899998877665544
No 197
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=96.93 E-value=0.016 Score=50.31 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=72.2
Q ss_pred CCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcC--CccccceeeccC-------------C-------------
Q 023109 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHG--WNESFSVIVGSD-------------E------------- 143 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~g--l~~~fd~i~~~~-------------~------------- 143 (287)
..+....++..+++.|.++.++||+...+....+..++| +..+||.++... +
T Consensus 199 ~d~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~ 278 (424)
T KOG2469|consen 199 YDGTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDN 278 (424)
T ss_pred ecCccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeecccccccccccc
Confidence 344455589999999999999999988887766645554 667888765431 0
Q ss_pred ----cCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCH-hhHH-HHHHcCCeEEEECC
Q 023109 144 ----VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVV-AGKAAGMEVVAVPS 193 (287)
Q Consensus 144 ----~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~-~Dv~-~a~~aG~~~i~v~~ 193 (287)
-..+.+++.....++..++....+++|+||+. .|+- ..+.-|+.++.+..
T Consensus 279 ~~p~e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~p 334 (424)
T KOG2469|consen 279 TGPLEQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAP 334 (424)
T ss_pred CCcchhcccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEeh
Confidence 01233455667788888898889999999998 4543 45566777766654
No 198
>PLN03190 aminophospholipid translocase; Provisional
Probab=96.89 E-value=0.00093 Score=67.01 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=79.4
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcccc---------------------------------
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF--------------------------------- 135 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~f--------------------------------- 135 (287)
.-++.+|+.+.++.++++|++++++|+-....+..+. ...++-..-
T Consensus 724 ~D~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA-~s~~Ll~~~~~~i~i~~~~~~~~~~~l~~~~~~~~~~~~~~~ 802 (1178)
T PLN03190 724 EDKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIG-YSSKLLTNKMTQIIINSNSKESCRKSLEDALVMSKKLTTVSG 802 (1178)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHhCCCCCCCeeEEecCCchhhHHHHHHHHhhhhhhcccccc
Confidence 3489999999999999999999999998877766665 433331100
Q ss_pred ----------------ceeeccCCc----------------------CCCCCCHHHHHHHHHHcCCC-CCcEEEEeCCHh
Q 023109 136 ----------------SVIVGSDEV----------------------RTGKPSPDIFLEAAKRLNME-PSSSLVIEDSVI 176 (287)
Q Consensus 136 ----------------d~i~~~~~~----------------------~~~kp~~~~~~~~~~~l~~~-~~~~l~iGDs~~ 176 (287)
..++.+... -..+-.|.-...+.+.+.-. ..-++++||+.|
T Consensus 803 ~~~~~~~~~~~~~~~~~lVIdG~~L~~~l~~~~~~~f~~l~~~~~~VI~cR~sP~QKa~IV~~vk~~~~~vtlaIGDGaN 882 (1178)
T PLN03190 803 ISQNTGGSSAAASDPVALIIDGTSLVYVLDSELEEQLFQLASKCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGAN 882 (1178)
T ss_pred ccccccccccccCCceEEEEEcHHHHHHhhhHHHHHHHHHHHhCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEECCCcc
Confidence 011111000 00111222223333333322 346899999999
Q ss_pred hHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccCcCcccc
Q 023109 177 GVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (287)
Q Consensus 177 Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~~~~ 219 (287)
|+.|.++|.+.+ ++ .|.........+|+.++.+..+.++++
T Consensus 883 Dv~mIq~AdVGI-GI-sG~EG~qA~~aSDfaI~~Fr~L~rLLl 923 (1178)
T PLN03190 883 DVSMIQMADVGV-GI-SGQEGRQAVMASDFAMGQFRFLVPLLL 923 (1178)
T ss_pred hHHHHHhcCeee-ee-cCchhHHHHHhhccchhhhHHHHHHHH
Confidence 999999998655 32 233333445677999999888766653
No 199
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=96.84 E-value=0.007 Score=50.55 Aligned_cols=89 Identities=22% Similarity=0.272 Sum_probs=56.6
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHH---HHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCC
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~---~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~ 166 (287)
..++||+.++|+.|+++|++++++||++... ..+.+....+++...+.+++|.... ...+++. .++.
T Consensus 23 ~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at---------~~~l~~~-~~~~ 92 (269)
T COG0647 23 NEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDAT---------ADYLAKQ-KPGK 92 (269)
T ss_pred CccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHH---------HHHHHhh-CCCC
Confidence 3578999999999999999999999996543 4456623356666677777764321 2222221 1225
Q ss_pred cEEEEeCCHhhHHHHHHcCCeEE
Q 023109 167 SSLVIEDSVIGVVAGKAAGMEVV 189 (287)
Q Consensus 167 ~~l~iGDs~~Dv~~a~~aG~~~i 189 (287)
.|.+|| ...+.+.++.+|+..+
T Consensus 93 kv~viG-~~~l~~~l~~~G~~~~ 114 (269)
T COG0647 93 KVYVIG-EEGLKEELEGAGFELV 114 (269)
T ss_pred EEEEEC-CcchHHHHHhCCcEEe
Confidence 566666 3345566666665443
No 200
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.62 E-value=0.0047 Score=49.58 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=29.2
Q ss_pred CcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhh
Q 023109 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQ 128 (287)
Q Consensus 94 ~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~ 128 (287)
+.+.+.|++++++|.+++++|+++...+...+ +.
T Consensus 20 ~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~-~~ 53 (204)
T TIGR01484 20 PETIEALERLREAGVKVVLVTGRSLAEIKELL-KQ 53 (204)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-Hh
Confidence 45667899999999999999999999988877 44
No 201
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.0049 Score=55.09 Aligned_cols=91 Identities=14% Similarity=0.132 Sum_probs=72.0
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~ 170 (287)
...||.+|-+.++|+.|++.+.+|+-++-.+..+. ...|++++.. ..+ |+-..+++++-+-...=+.|
T Consensus 447 ivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA-~EAGVDdfiA---------eat--PEdK~~~I~~eQ~~grlVAM 514 (681)
T COG2216 447 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIA-AEAGVDDFIA---------EAT--PEDKLALIRQEQAEGRLVAM 514 (681)
T ss_pred hcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHH-HHhCchhhhh---------cCC--hHHHHHHHHHHHhcCcEEEE
Confidence 35799999999999999999999999988888777 6678754332 123 44556667777777778999
Q ss_pred EeCCHhhHHHHHHcCCeEEEECC
Q 023109 171 IEDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 171 iGDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
.||+.||.++..+|....++.+.
T Consensus 515 tGDGTNDAPALAqAdVg~AMNsG 537 (681)
T COG2216 515 TGDGTNDAPALAQADVGVAMNSG 537 (681)
T ss_pred cCCCCCcchhhhhcchhhhhccc
Confidence 99999999999999976666544
No 202
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=96.43 E-value=0.02 Score=48.55 Aligned_cols=87 Identities=21% Similarity=0.229 Sum_probs=59.3
Q ss_pred CCCcHHHHHHHHHHCCCCEEEEeCCCh---HHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcE
Q 023109 92 ALPGANRLIKHLSCHGVPMALASNSHR---ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~l~T~~~~---~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~ 168 (287)
+.||+.++|++++++|++++++||++. ......+ ..+|+....+.++++. ......++.....+..+
T Consensus 19 ~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l-~~~G~~~~~~~i~ts~---------~~~~~~l~~~~~~~~~v 88 (279)
T TIGR01452 19 VVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKF-ARLGFNGLAEQLFSSA---------LCAARLLRQPPDAPKAV 88 (279)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCChhhEecHH---------HHHHHHHHhhCcCCCEE
Confidence 567899999999999999999999653 3333466 6678765455555432 33344555544445679
Q ss_pred EEEeCCHhhHHHHHHcCCeEE
Q 023109 169 LVIEDSVIGVVAGKAAGMEVV 189 (287)
Q Consensus 169 l~iGDs~~Dv~~a~~aG~~~i 189 (287)
+++|+. .....++..|+..+
T Consensus 89 ~~iG~~-~~~~~l~~~g~~~~ 108 (279)
T TIGR01452 89 YVIGEE-GLRAELDAAGIRLA 108 (279)
T ss_pred EEEcCH-HHHHHHHHCCCEEe
Confidence 999985 34556678887755
No 203
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.29 E-value=0.1 Score=41.96 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=32.7
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCC
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl 131 (287)
...+.||+.+.++.+.+. .+-+++|.+-..++++.. ++.|+
T Consensus 81 sa~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a-~~ig~ 121 (315)
T COG4030 81 SAKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTA-SMIGV 121 (315)
T ss_pred hcccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHH-HhcCC
Confidence 367889999999999887 677888888777777776 76665
No 204
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.015 Score=55.13 Aligned_cols=113 Identities=15% Similarity=0.099 Sum_probs=72.5
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccce--eeccCCcC------------------CCCC
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV--IVGSDEVR------------------TGKP 149 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~--i~~~~~~~------------------~~kp 149 (287)
-|.+||+.+.++.+++.|+++-.+|+.+-..++++. ..+|+...=+. .+-+.+.. ...|
T Consensus 646 DPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA-~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP 724 (1034)
T KOG0204|consen 646 DPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIA-RECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSP 724 (1034)
T ss_pred CCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHH-HHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCC
Confidence 378999999999999999999999999999999888 77886432221 11111111 1112
Q ss_pred CHHHHHHHHHHcCCCCCcEEEE-eCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEe
Q 023109 150 SPDIFLEAAKRLNMEPSSSLVI-EDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI 208 (287)
Q Consensus 150 ~~~~~~~~~~~l~~~~~~~l~i-GDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~ 208 (287)
. -...+.+.+. ...++++| ||+.||-++.++|.+..+|.-+|. +-.++.+|.++
T Consensus 725 ~--DK~lLVk~L~-~~g~VVAVTGDGTNDaPALkeADVGlAMGIaGT--eVAKEaSDIIi 779 (1034)
T KOG0204|consen 725 N--DKHLLVKGLI-KQGEVVAVTGDGTNDAPALKEADVGLAMGIAGT--EVAKEASDIII 779 (1034)
T ss_pred c--hHHHHHHHHH-hcCcEEEEecCCCCCchhhhhcccchhccccch--hhhhhhCCeEE
Confidence 1 1111112222 22355555 999999999999997777665543 22345556665
No 205
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=96.12 E-value=0.041 Score=44.66 Aligned_cols=80 Identities=14% Similarity=0.038 Sum_probs=58.3
Q ss_pred EEEEeCCChHHHHHHHHhhcCCcccc--ceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCe
Q 023109 110 MALASNSHRATIESKISYQHGWNESF--SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME 187 (287)
Q Consensus 110 v~l~T~~~~~~~~~~l~~~~gl~~~f--d~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~ 187 (287)
-++||++.---.-.+. -.+++...| +.|+++-. .++...|+++.+++|-+...+++|||+...-.+|+..+++
T Consensus 178 NvLVTs~qLVPaLaKc-LLy~L~~~f~ieNIYSa~k----vGK~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wP 252 (274)
T TIGR01658 178 NVLVTSGQLIPSLAKC-LLFRLDTIFRIENVYSSIK----VGKLQCFKWIKERFGHPKVRFCAIGDGWEECTAAQAMNWP 252 (274)
T ss_pred EEEEEcCccHHHHHHH-HHhccCCccccccccchhh----cchHHHHHHHHHHhCCCCceEEEeCCChhHHHHHHhcCCC
Confidence 3566665433222222 235666655 56666543 3457899999999998788999999999999999999999
Q ss_pred EEEECCC
Q 023109 188 VVAVPSL 194 (287)
Q Consensus 188 ~i~v~~~ 194 (287)
++-+...
T Consensus 253 Fw~I~~h 259 (274)
T TIGR01658 253 FVKIDLH 259 (274)
T ss_pred eEEeecC
Confidence 9988874
No 206
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=95.09 E-value=0.047 Score=47.23 Aligned_cols=96 Identities=17% Similarity=0.216 Sum_probs=59.5
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCCh------------HHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHH
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHR------------ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA 158 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~------------~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~ 158 (287)
.+.+.+..=|+.+.+.|+.+++.||... ..++.+. ..+++. |....+.-.....||.........
T Consensus 104 ~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~-anl~vP--i~~~~A~~~~~yRKP~tGMwe~~~ 180 (422)
T KOG2134|consen 104 ILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIV-ANLGVP--IQLLAAIIKGKYRKPSTGMWEFLK 180 (422)
T ss_pred eeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHH-HhcCCc--eEEeeeccCCcccCcchhHHHHHH
Confidence 3456666778889999999999997632 1223334 334442 333333334467899888887777
Q ss_pred HHcC----CCCCcEEEEeC---------------CHhhHHHHHHcCCeEE
Q 023109 159 KRLN----MEPSSSLVIED---------------SVIGVVAGKAAGMEVV 189 (287)
Q Consensus 159 ~~l~----~~~~~~l~iGD---------------s~~Dv~~a~~aG~~~i 189 (287)
+..+ +.-..+.|+|| |..|+..|.++|+...
T Consensus 181 ~~~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF~ 230 (422)
T KOG2134|consen 181 RLENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKFK 230 (422)
T ss_pred HHhhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCccC
Confidence 6654 33335556665 3357888888886543
No 207
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=94.99 E-value=0.042 Score=45.06 Aligned_cols=95 Identities=21% Similarity=0.256 Sum_probs=52.3
Q ss_pred ccCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeecc----CCc----CCCCCCHHHHH---H
Q 023109 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS----DEV----RTGKPSPDIFL---E 156 (287)
Q Consensus 88 ~~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~----~~~----~~~kp~~~~~~---~ 156 (287)
..+.+++|+.++++.|+++++|+.|+|++-...++..+ ++.+....=-.|++. |+. +...|--..|. .
T Consensus 87 s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL-~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~ 165 (246)
T PF05822_consen 87 SDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVL-RQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNES 165 (246)
T ss_dssp S---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHH-HHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHH
T ss_pred cchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHH-HHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCcc
Confidence 36889999999999999999999999999999999999 444532110011110 110 00011001111 1
Q ss_pred HH------HHcCCCCCcEEEEeCCHhhHHHHHHc
Q 023109 157 AA------KRLNMEPSSSLVIEDSVIGVVAGKAA 184 (287)
Q Consensus 157 ~~------~~l~~~~~~~l~iGDs~~Dv~~a~~a 184 (287)
++ +.+ -...+++..|||..|+.|+...
T Consensus 166 ~l~~~~~~~~~-~~R~NvlLlGDslgD~~Ma~G~ 198 (246)
T PF05822_consen 166 ALEDSPYFKQL-KKRTNVLLLGDSLGDLHMADGV 198 (246)
T ss_dssp HHTTHHHHHCT-TT--EEEEEESSSGGGGTTTT-
T ss_pred cccCchHHHHh-ccCCcEEEecCccCChHhhcCC
Confidence 11 111 1345899999999999998877
No 208
>PLN02580 trehalose-phosphatase
Probab=94.70 E-value=0.063 Score=47.23 Aligned_cols=65 Identities=11% Similarity=-0.012 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHcCCCCC-c--EEEEeCCHhhHHHHHH-----cCCeEEEECCCCCccccccCCcEEeCCccCcCccc
Q 023109 149 PSPDIFLEAAKRLNMEPS-S--SLVIEDSVIGVVAGKA-----AGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218 (287)
Q Consensus 149 p~~~~~~~~~~~l~~~~~-~--~l~iGDs~~Dv~~a~~-----aG~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~~~ 218 (287)
.|+..++.+++.+++... . .+||||..+|..|.+. .|+.+.+.+.. ....|.+.+++..++...+
T Consensus 301 ~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G~~I~Vgn~~-----~~t~A~y~L~dp~eV~~~L 373 (384)
T PLN02580 301 NKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGNRGYGILVSSVP-----KESNAFYSLRDPSEVMEFL 373 (384)
T ss_pred CHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHhhhccCCceEEEEecCC-----CCccceEEcCCHHHHHHHH
Confidence 345666777777777665 3 3899999999999986 36554444321 1345678888888876554
No 209
>PLN02151 trehalose-phosphatase
Probab=94.47 E-value=0.075 Score=46.21 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=26.7
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHH
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l 125 (287)
.+.++..+.|+.|.+ +.+++|+|+.+...+...+
T Consensus 120 ~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l~~~~ 153 (354)
T PLN02151 120 FMSKKMRNTVRKLAK-CFPTAIVSGRCREKVSSFV 153 (354)
T ss_pred cCCHHHHHHHHHHhc-CCCEEEEECCCHHHHHHHc
Confidence 455677788888884 4789999999988887665
No 210
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=94.33 E-value=0.32 Score=48.60 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHhhhc-------cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHH
Q 023109 71 AKHEFVNEVYSMFSDHLC-------KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (287)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l 125 (287)
+.++..++..+....... +-++.+|+.+.++.|+++|++++++|+-..+.+-.+.
T Consensus 624 ~Re~~L~e~ae~iEk~L~LLGATAIEDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg 685 (1151)
T KOG0206|consen 624 DREELLDEVAEEIEKDLILLGATAIEDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIG 685 (1151)
T ss_pred CHHHHHHHHHHHHHhcchhhcceeeechhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHH
Confidence 456666666666555432 4578999999999999999999999987777665544
No 211
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.07 E-value=0.14 Score=41.86 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=62.1
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeecc----CCcCC------------CCCCHH
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS----DEVRT------------GKPSPD 152 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~----~~~~~------------~kp~~~ 152 (287)
.+.+++|..++++.|+++++|+.++|++-...++.++.+..++.. +-.+++. ++.+. .|.. .
T Consensus 136 ~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~p-n~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~-~ 213 (298)
T KOG3128|consen 136 NIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHP-NVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNS-S 213 (298)
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCc-cHHhhhhhhhhcccchhhhhhHHHHHHHccch-H
Confidence 456778999999999999999999999998888888866655433 2222221 11111 1111 1
Q ss_pred HHHHHHHHcC--CCCCcEEEEeCCHhhHHHHHHcC
Q 023109 153 IFLEAAKRLN--MEPSSSLVIEDSVIGVVAGKAAG 185 (287)
Q Consensus 153 ~~~~~~~~l~--~~~~~~l~iGDs~~Dv~~a~~aG 185 (287)
..+...+.+. ....+++..|||.-|+.|+..+-
T Consensus 214 v~~~~s~yf~~~~~~~nVillGdsigdl~ma~gv~ 248 (298)
T KOG3128|consen 214 VLQNESEYFHQLAGRVNVILLGDSIGDLHMADGVP 248 (298)
T ss_pred HHHhhhHHHhhccCCceEEEeccccccchhhcCCc
Confidence 2222233333 34568999999999999987653
No 212
>PLN03017 trehalose-phosphatase
Probab=94.05 E-value=0.14 Score=44.80 Aligned_cols=13 Identities=46% Similarity=0.621 Sum_probs=11.2
Q ss_pred ccEEEEecCCccc
Q 023109 9 MSCVILDLDGTLL 21 (287)
Q Consensus 9 ~k~iifDlDGTL~ 21 (287)
-.+|++|+||||+
T Consensus 111 ~~llflD~DGTL~ 123 (366)
T PLN03017 111 QIVMFLDYDGTLS 123 (366)
T ss_pred CeEEEEecCCcCc
Confidence 3578999999998
No 213
>PRK10444 UMP phosphatase; Provisional
Probab=94.01 E-value=0.38 Score=39.96 Aligned_cols=49 Identities=27% Similarity=0.375 Sum_probs=36.2
Q ss_pred CCCcHHHHHHHHHHCCCCEEEEeCCChHHH---HHHHHhhcCCccccceeecc
Q 023109 92 ALPGANRLIKHLSCHGVPMALASNSHRATI---ESKISYQHGWNESFSVIVGS 141 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~---~~~l~~~~gl~~~fd~i~~~ 141 (287)
+.|++.+++++++++|.+++++||++.... ...+ ...|+.-.-+.++++
T Consensus 18 ~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l-~~~G~~~~~~~i~ts 69 (248)
T PRK10444 18 AVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRF-ATAGVDVPDSVFYTS 69 (248)
T ss_pred eCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCCHhhEecH
Confidence 578999999999999999999999976443 3445 556765444555544
No 214
>PTZ00174 phosphomannomutase; Provisional
Probab=93.66 E-value=0.079 Score=43.97 Aligned_cols=47 Identities=6% Similarity=-0.167 Sum_probs=37.9
Q ss_pred CcCCCCCCHHHHHHHHHHcCCCCCcEEEEeC----CHhhHHHHHHcCCeEEEECC
Q 023109 143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIED----SVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 143 ~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGD----s~~Dv~~a~~aG~~~i~v~~ 193 (287)
-...+-.|..+++.+++. ++++++||| +.||++|.+.++...+.+.+
T Consensus 182 I~~~gvsKg~al~~L~~~----~~eviafGD~~~~~~NDieMl~~~~~~g~~v~n 232 (247)
T PTZ00174 182 VFPKGWDKTYCLRHLEND----FKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVKN 232 (247)
T ss_pred eeeCCCcHHHHHHHHHhh----hhhEEEEcccCCCCCCcHhhhhcCCCceEEeCC
Confidence 345566677888888887 689999999 88999999988877677664
No 215
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=93.63 E-value=0.39 Score=36.08 Aligned_cols=96 Identities=17% Similarity=0.103 Sum_probs=55.2
Q ss_pred CCCcHHHHHHHHHHC-C-CCEEEEeCCChH-------HHHHHHHhhcCCccccceeeccCCcCCCCCC--HHHHHHHHHH
Q 023109 92 ALPGANRLIKHLSCH-G-VPMALASNSHRA-------TIESKISYQHGWNESFSVIVGSDEVRTGKPS--PDIFLEAAKR 160 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~-g-~~v~l~T~~~~~-------~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~--~~~~~~~~~~ 160 (287)
.-|....-++++++. | ..++++||+-.. ...+.++...|+. .+- ....||. .+.+.+.-..
T Consensus 62 Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIp----VlR----Hs~kKP~ct~E~~~y~~~N 133 (190)
T KOG2961|consen 62 IWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIP----VLR----HSVKKPACTAEEVEYHFGN 133 (190)
T ss_pred cCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCc----eEe----ecccCCCccHHHHHHHhCC
Confidence 344555556666653 3 678888876321 1112222333431 111 1123332 2333332222
Q ss_pred cC-CCCCcEEEEeCCH-hhHHHHHHcCCeEEEECCCC
Q 023109 161 LN-MEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLP 195 (287)
Q Consensus 161 l~-~~~~~~l~iGDs~-~Dv~~a~~aG~~~i~v~~~~ 195 (287)
-. ..++++++|||.+ .|+-+|..+|-..++...+.
T Consensus 134 shv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv 170 (190)
T KOG2961|consen 134 SHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGV 170 (190)
T ss_pred cccCChhHeEEEccchhhhHhhhhhccceeEEecccc
Confidence 22 5678999999999 89999999999999987754
No 216
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=93.47 E-value=0.55 Score=38.66 Aligned_cols=86 Identities=21% Similarity=0.232 Sum_probs=55.6
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCC---hHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCc
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSH---RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~---~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~ 167 (287)
.++|++.+.++.++++|+++.++||++ .......+.+++|+.-..+.++.+.. .....++... +...
T Consensus 14 ~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~---------~~~~~l~~~~-~~~~ 83 (236)
T TIGR01460 14 KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGS---------VTKDLLRQRF-EGEK 83 (236)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHH---------HHHHHHHHhC-CCCE
Confidence 457899999999999999999999774 34444556354777655666665432 2233333222 3346
Q ss_pred EEEEeCCHhhHHHHHHcCCe
Q 023109 168 SLVIEDSVIGVVAGKAAGME 187 (287)
Q Consensus 168 ~l~iGDs~~Dv~~a~~aG~~ 187 (287)
++.+|. ....+.++..|+.
T Consensus 84 v~v~G~-~~~~~~l~~~g~~ 102 (236)
T TIGR01460 84 VYVIGV-GELRESLEGLGFR 102 (236)
T ss_pred EEEECC-HHHHHHHHHcCCc
Confidence 777885 3455666777754
No 217
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=93.43 E-value=0.11 Score=41.59 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=23.8
Q ss_pred HHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCc
Q 023109 98 RLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (287)
Q Consensus 98 ~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~ 132 (287)
+.+.++++.|++|+++|..++......- +.+|+.
T Consensus 30 pv~~el~d~G~~Vi~~SSKT~aE~~~l~-~~l~v~ 63 (274)
T COG3769 30 PVLLELKDAGVPVILCSSKTRAEMLYLQ-KSLGVQ 63 (274)
T ss_pred hHHHHHHHcCCeEEEeccchHHHHHHHH-HhcCCC
Confidence 4666788888888888887776655444 566654
No 218
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=93.32 E-value=0.19 Score=41.80 Aligned_cols=49 Identities=10% Similarity=0.308 Sum_probs=38.9
Q ss_pred CCCcHHHHHHHHHHCCCCEEEEeCC---ChHHHHHHHHhhcCCccccceeecc
Q 023109 92 ALPGANRLIKHLSCHGVPMALASNS---HRATIESKISYQHGWNESFSVIVGS 141 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~l~T~~---~~~~~~~~l~~~~gl~~~fd~i~~~ 141 (287)
+.|++.+++++++++|++++++||+ +.......+ +..|+....+.++++
T Consensus 18 ~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l-~~~g~~~~~~~iit~ 69 (249)
T TIGR01457 18 RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEML-ASFDIPATLETVFTA 69 (249)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCChhhEeeH
Confidence 3468899999999999999999984 466666777 778887666777765
No 219
>PLN02580 trehalose-phosphatase
Probab=93.20 E-value=0.079 Score=46.65 Aligned_cols=14 Identities=43% Similarity=0.562 Sum_probs=11.6
Q ss_pred ccEEEEecCCcccc
Q 023109 9 MSCVILDLDGTLLN 22 (287)
Q Consensus 9 ~k~iifDlDGTL~d 22 (287)
-.++++|+||||..
T Consensus 119 ~~~LfLDyDGTLaP 132 (384)
T PLN02580 119 KIALFLDYDGTLSP 132 (384)
T ss_pred CeEEEEecCCccCC
Confidence 35889999999984
No 220
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=93.12 E-value=0.89 Score=38.69 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=53.3
Q ss_pred cCCCCCcHHHHHHHHHHCC-CCEEEEeCCChHHHH---HHHHhhcC----------CccccceeeccCCcCCCCCCHHHH
Q 023109 89 KVKALPGANRLIKHLSCHG-VPMALASNSHRATIE---SKISYQHG----------WNESFSVIVGSDEVRTGKPSPDIF 154 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g-~~v~l~T~~~~~~~~---~~l~~~~g----------l~~~fd~i~~~~~~~~~kp~~~~~ 154 (287)
.-++.||+-.+.+.+.+.| .++..+||++..... +.+ ...+ +...++.++.+....+. ..+
T Consensus 194 tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi-~~~~~P~GPl~L~~~g~~~~~i~~sga~rK~----~~l 268 (373)
T COG4850 194 TRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFI-TNRNFPYGPLLLRRWGGVLDNIIESGAARKG----QSL 268 (373)
T ss_pred ccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHH-hcCCCCCCchhHhhcCCcccccccchhhhcc----cHH
Confidence 3468999999999999987 899999999765543 222 2211 12235666555433322 223
Q ss_pred HHHHHHcCCCCCcEEEEeCCH-hhHHH
Q 023109 155 LEAAKRLNMEPSSSLVIEDSV-IGVVA 180 (287)
Q Consensus 155 ~~~~~~l~~~~~~~l~iGDs~-~Dv~~ 180 (287)
+.+++++ +-..++.||||- .|.+.
T Consensus 269 ~nil~~~--p~~kfvLVGDsGE~DpeI 293 (373)
T COG4850 269 RNILRRY--PDRKFVLVGDSGEHDPEI 293 (373)
T ss_pred HHHHHhC--CCceEEEecCCCCcCHHH
Confidence 3344433 234899999998 57765
No 221
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=93.12 E-value=0.15 Score=42.65 Aligned_cols=49 Identities=18% Similarity=0.379 Sum_probs=37.4
Q ss_pred CCCcHHHHHHHHHHCCCCEEEEeCCChH---HHHHHHHhhcCCccccceeecc
Q 023109 92 ALPGANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNESFSVIVGS 141 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~l~T~~~~~---~~~~~l~~~~gl~~~fd~i~~~ 141 (287)
+.|++.+++++++++|++++++||++.. .....+ ..+|+.-..+.++++
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l-~~~g~~~~~~~i~ts 73 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL-QRLGFDISEDEVFTP 73 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH-HHcCCCCCHHHeEcH
Confidence 5789999999999999999999997554 355566 667776444555554
No 222
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=92.90 E-value=0.16 Score=42.44 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=28.7
Q ss_pred CCCCCcHHHHHHHHHHCC-CCEEEEeCCChHHHHHHH
Q 023109 90 VKALPGANRLIKHLSCHG-VPMALASNSHRATIESKI 125 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g-~~v~l~T~~~~~~~~~~l 125 (287)
..+.+++.++|+.|.++. ..++++|+.+....+..+
T Consensus 39 a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~ 75 (266)
T COG1877 39 AVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLF 75 (266)
T ss_pred cCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhc
Confidence 356778888999998873 248999999999888666
No 223
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=92.88 E-value=1.5 Score=36.22 Aligned_cols=73 Identities=16% Similarity=0.107 Sum_probs=47.3
Q ss_pred CCCEEEEeCCChHHHHHHHH--hhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHc
Q 023109 107 GVPMALASNSHRATIESKIS--YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA 184 (287)
Q Consensus 107 g~~v~l~T~~~~~~~~~~l~--~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~a 184 (287)
-++++|+|+.+...-++.+. ...|+ .+|..+.-. +-+| ..+++.++ |+ ++|+|....+..|. .
T Consensus 186 piRtalVTAR~apah~RvI~TLr~Wgv--~vDEafFLg----G~~K----~~vL~~~~--ph--IFFDDQ~~H~~~a~-~ 250 (264)
T PF06189_consen 186 PIRTALVTARSAPAHERVIRTLRSWGV--RVDEAFFLG----GLPK----GPVLKAFR--PH--IFFDDQDGHLESAS-K 250 (264)
T ss_pred ceEEEEEEcCCCchhHHHHHHHHHcCC--cHhHHHHhC----CCch----hHHHHhhC--CC--EeecCchhhhhHhh-c
Confidence 47899999886655455552 33344 355544322 2233 34555554 32 99999999999998 8
Q ss_pred CCeEEEECCC
Q 023109 185 GMEVVAVPSL 194 (287)
Q Consensus 185 G~~~i~v~~~ 194 (287)
+++++.|+.+
T Consensus 251 ~vps~hVP~g 260 (264)
T PF06189_consen 251 VVPSGHVPYG 260 (264)
T ss_pred CCCEEeccCC
Confidence 8888888764
No 224
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=91.91 E-value=0.5 Score=45.20 Aligned_cols=106 Identities=19% Similarity=0.150 Sum_probs=68.8
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcccccee--------------eccCC-----cCCCCC
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVI--------------VGSDE-----VRTGKP 149 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i--------------~~~~~-----~~~~kp 149 (287)
..|+.++.++.++++.+.+++++.+|+-+.-.+-.+. +..|+...-.-+ .+.|+ ....++
T Consensus 673 ~CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVa-k~v~iv~k~~~vl~~~~~~~~~~~~w~s~d~t~~lp~~p~~~ 751 (1160)
T KOG0209|consen 673 SCPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVA-KEVGIVEKPTLVLDLPEEGDGNQLEWVSVDGTIVLPLKPGKK 751 (1160)
T ss_pred eCCCCccHHHHHHHHhccCceEEEEeCCCccchheeh-heeeeeccCceeeccCccCCCceeeEecCCCceeecCCCCcc
Confidence 3689999999999999999999999998776666555 444442210000 00010 001111
Q ss_pred ---------------------------------------CHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEE
Q 023109 150 ---------------------------------------SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 190 (287)
Q Consensus 150 ---------------------------------------~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~ 190 (287)
.|...+.++..+.--.-.++|.||+.||+-+.+.|...++.
T Consensus 752 ~~~l~~~~dlcitG~~l~~l~~~~~l~~l~~hv~VfARvaP~QKE~ii~tlK~~Gy~TLMCGDGTNDVGALK~AhVGVAL 831 (1160)
T KOG0209|consen 752 KTLLAETHDLCITGSALDHLQATDQLRRLIPHVWVFARVAPKQKEFIITTLKKLGYVTLMCGDGTNDVGALKQAHVGVAL 831 (1160)
T ss_pred chhhhhhhhhhcchhHHHHHhhhHHHHHhhhheeEEEeeChhhHHHHHHHHHhcCeEEEEecCCCcchhhhhhcccceeh
Confidence 11222333333444445799999999999999999999888
Q ss_pred ECCCC
Q 023109 191 VPSLP 195 (287)
Q Consensus 191 v~~~~ 195 (287)
.++..
T Consensus 832 L~~~~ 836 (1160)
T KOG0209|consen 832 LNNPE 836 (1160)
T ss_pred hcCCh
Confidence 88743
No 225
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=91.50 E-value=0.45 Score=35.26 Aligned_cols=85 Identities=13% Similarity=0.182 Sum_probs=53.3
Q ss_pred ccCCCCCcHHHHHHHHHHCCCCEEEEeCC--ChHHHHHHH---HhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcC
Q 023109 88 CKVKALPGANRLIKHLSCHGVPMALASNS--HRATIESKI---SYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (287)
Q Consensus 88 ~~~~~~~g~~~~l~~l~~~g~~v~l~T~~--~~~~~~~~l---~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~ 162 (287)
..+...|++.+.+++|.+. +.++++|++ .....+.+. .+.+.+.++-..++|+. |.
T Consensus 65 RnL~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgn-----Kn------------- 125 (180)
T COG4502 65 RNLGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGN-----KN------------- 125 (180)
T ss_pred hhcCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecC-----CC-------------
Confidence 4567889999999999987 899999987 333333333 14444444444555532 11
Q ss_pred CCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCC
Q 023109 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195 (287)
Q Consensus 163 ~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~ 195 (287)
+ -..=++|+|++..++..+... +++...+
T Consensus 126 i-vkaDilIDDnp~nLE~F~G~k---IlFdA~H 154 (180)
T COG4502 126 I-VKADILIDDNPLNLENFKGNK---ILFDAHH 154 (180)
T ss_pred e-EEeeEEecCCchhhhhccCce---EEEeccc
Confidence 0 012378999998888877555 4555533
No 226
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=89.64 E-value=1.1 Score=38.16 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=15.7
Q ss_pred EEEEecCCcccccHHHHHHH
Q 023109 11 CVILDLDGTLLNTDGMFSEV 30 (287)
Q Consensus 11 ~iifDlDGTL~d~~~~~~~~ 30 (287)
.++||+||+|+.....+..+
T Consensus 37 gfafDIDGVL~RG~~~i~~~ 56 (389)
T KOG1618|consen 37 GFAFDIDGVLFRGHRPIPGA 56 (389)
T ss_pred eEEEecccEEEecCCCCcch
Confidence 79999999999886554433
No 227
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=89.59 E-value=0.49 Score=38.89 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=19.0
Q ss_pred CCCCcHHHHHHHHHHCC-CCEEEEeCCChHHHHHH
Q 023109 91 KALPGANRLIKHLSCHG-VPMALASNSHRATIESK 124 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g-~~v~l~T~~~~~~~~~~ 124 (287)
.+.+++.+.|+.|.+.. ..++|+|+.+....+..
T Consensus 19 ~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~ 53 (235)
T PF02358_consen 19 VPPPELRELLRALAADPNNTVAIVSGRSLDDLERF 53 (235)
T ss_dssp ---HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH
T ss_pred CCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHh
Confidence 34556777787777753 36888888887774433
No 228
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=89.48 E-value=8.1 Score=32.75 Aligned_cols=97 Identities=19% Similarity=0.130 Sum_probs=57.1
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHH--hhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCC
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~--~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~ 166 (287)
.-.+.||+.+.++.|++.|..+.++||++....+..++ .++|+.. +..+ ..-.|.......+-+.. -..+
T Consensus 36 g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~-----v~e~--~i~ssa~~~a~ylk~~~-~~~k 107 (306)
T KOG2882|consen 36 GEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS-----VKEE--NIFSSAYAIADYLKKRK-PFGK 107 (306)
T ss_pred cCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc-----cCcc--cccChHHHHHHHHHHhC-cCCC
Confidence 34688999999999999999999999997655443331 4556542 1111 11122222223322322 2335
Q ss_pred cEEEEeCCHhhHHHHHHcCCeEEEECCC
Q 023109 167 SSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (287)
Q Consensus 167 ~~l~iGDs~~Dv~~a~~aG~~~i~v~~~ 194 (287)
.+..+|-.. =-+.++++|+.....+..
T Consensus 108 ~Vyvig~~g-i~~eL~~aG~~~~g~~~~ 134 (306)
T KOG2882|consen 108 KVYVIGEEG-IREELDEAGFEYFGGGPD 134 (306)
T ss_pred eEEEecchh-hhHHHHHcCceeecCCCC
Confidence 666666443 334577888777766653
No 229
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=89.44 E-value=0.86 Score=42.70 Aligned_cols=78 Identities=18% Similarity=0.107 Sum_probs=55.5
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCc-ccc-ceeeccCCcCCCCCCHHHHHHHHHHcCCCCC
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ESF-SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~-~~f-d~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~ 166 (287)
.+.++|++.+||+++.+. +.+.++|.+++.++..++ +.+.-. .+| |.|++.++.+..|. .......|.
T Consensus 199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~-~liDP~~~lF~dRIisrde~~~~kt--------~dL~~~~p~ 268 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIA-KLIDPEGKYFGDRIISRDESPFFKT--------LDLVLLFPC 268 (635)
T ss_pred EEEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHH-HHhCCCCccccceEEEecCCCcccc--------cccccCCCC
Confidence 467899999999999987 999999999999998887 554432 234 78888887544332 233334444
Q ss_pred c---EEEEeCCHh
Q 023109 167 S---SLVIEDSVI 176 (287)
Q Consensus 167 ~---~l~iGDs~~ 176 (287)
+ ++.|+|+..
T Consensus 269 g~smvvIIDDr~d 281 (635)
T KOG0323|consen 269 GDSMVVIIDDRSD 281 (635)
T ss_pred CCccEEEEeCccc
Confidence 4 777777653
No 230
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=89.44 E-value=0.77 Score=38.65 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=34.8
Q ss_pred CcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcccc
Q 023109 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF 135 (287)
Q Consensus 94 ~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~f 135 (287)
+++.+.++.++++|++++++|+.+...+...+ +.+++..++
T Consensus 24 ~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~-~~l~l~~~~ 64 (273)
T PRK00192 24 EPAKPALKALKEKGIPVIPCTSKTAAEVEVLR-KELGLEDPF 64 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCCCE
Confidence 45678899999999999999999999998888 888876544
No 231
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=89.04 E-value=1.9 Score=40.18 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=17.2
Q ss_pred cEEEEeCCHhhHHHHHHcCCe
Q 023109 167 SSLVIEDSVIGVVAGKAAGME 187 (287)
Q Consensus 167 ~~l~iGDs~~Dv~~a~~aG~~ 187 (287)
=...||+..+|+-.=++.|++
T Consensus 652 FYAgFGNR~TDviSY~~VgVP 672 (738)
T KOG2116|consen 652 FYAGFGNRITDVISYRQVGVP 672 (738)
T ss_pred eeeecCCCcccceeeeeecCC
Confidence 355679999999999999875
No 232
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=87.70 E-value=0.92 Score=44.37 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=29.5
Q ss_pred CCCCcHHHHHHHHHHC-CCCEEEEeCCChHHHHHHH
Q 023109 91 KALPGANRLIKHLSCH-GVPMALASNSHRATIESKI 125 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~-g~~v~l~T~~~~~~~~~~l 125 (287)
.+.|++.+.|+.|.+. +-.++|+|+.+...+++.+
T Consensus 532 ~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~ 567 (797)
T PLN03063 532 GLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNF 567 (797)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHh
Confidence 4567888999999875 5689999999999998777
No 233
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=87.45 E-value=1.3 Score=36.14 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=33.2
Q ss_pred CcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcc
Q 023109 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (287)
Q Consensus 94 ~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~ 133 (287)
+...+.+++++++|++++++|+.+...+...+ +.+|+..
T Consensus 18 ~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~-~~lg~~~ 56 (225)
T TIGR02461 18 GPAREALEELKDLGFPIVFVSSKTRAEQEYYR-EELGVEP 56 (225)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCCCC
Confidence 35678999999999999999999999888877 7778744
No 234
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=87.13 E-value=1.1 Score=44.29 Aligned_cols=39 Identities=13% Similarity=0.288 Sum_probs=31.4
Q ss_pred CCCCCcHHHHHHHHHHC-CCCEEEEeCCChHHHHHHHHhhc
Q 023109 90 VKALPGANRLIKHLSCH-GVPMALASNSHRATIESKISYQH 129 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~-g~~v~l~T~~~~~~~~~~l~~~~ 129 (287)
..+.|++.+.|+.|.+. +..|+|+|+.+...++..+ ...
T Consensus 621 a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~f-g~~ 660 (934)
T PLN03064 621 LRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENF-GEF 660 (934)
T ss_pred cCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHh-CCC
Confidence 35667888999999875 5689999999999988777 443
No 235
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=86.29 E-value=1.5 Score=42.19 Aligned_cols=101 Identities=14% Similarity=0.082 Sum_probs=64.6
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcc---------------ccce---------eeccCCcCC
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE---------------SFSV---------IVGSDEVRT 146 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~---------------~fd~---------i~~~~~~~~ 146 (287)
|+++.+.+.+..+++.|++++.+|+.....+++.. ..-|+.. ..+. |+.+++.
T Consensus 590 PPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA-~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL-- 666 (1019)
T KOG0203|consen 590 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIA-KSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSEL-- 666 (1019)
T ss_pred CCcccCchhhhhhhhhCceEEEEecCccchhhhhh-hheeeecCCchhhhhhHHhcCCcccccCccccceEEEecccc--
Confidence 67888999999999999999999999888877766 5545311 0111 1111111
Q ss_pred CCCCHHHHHHHHHHcC--------------------CCCCcEEEEeCCHhhHHHHHHcCCeEEEECCC
Q 023109 147 GKPSPDIFLEAAKRLN--------------------MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (287)
Q Consensus 147 ~kp~~~~~~~~~~~l~--------------------~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~ 194 (287)
..-.++-+.++++... ...+-+.+.||+.||-++.+.|.+.+++.-+|
T Consensus 667 ~~~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADIGVAMGiaG 734 (1019)
T KOG0203|consen 667 PDMSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAG 734 (1019)
T ss_pred cccCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccccceeecccc
Confidence 1112334444444331 11223445599999999999999888885554
No 236
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=86.23 E-value=4.2 Score=35.16 Aligned_cols=87 Identities=16% Similarity=0.219 Sum_probs=56.1
Q ss_pred CCCCcHHHHHHHHHHC----CCCEEEEeCCC---hHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCC
Q 023109 91 KALPGANRLIKHLSCH----GVPMALASNSH---RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~----g~~v~l~T~~~---~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~ 163 (287)
++.|++.++++.++.. |+++.++||.. .......+.+.+|+.-..+.++.+. ......++..+
T Consensus 16 ~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~---------~~~~~ll~~~~- 85 (321)
T TIGR01456 16 KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSH---------SPYKSLVNKYE- 85 (321)
T ss_pred cccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhh---------HHHHHHHHHcC-
Confidence 4578999999999998 99999999986 3332333336677654344444332 12344444432
Q ss_pred CCCcEEEEeCCHhhHHHHHHcCCeEEE
Q 023109 164 EPSSSLVIEDSVIGVVAGKAAGMEVVA 190 (287)
Q Consensus 164 ~~~~~l~iGDs~~Dv~~a~~aG~~~i~ 190 (287)
..++++|.+. -...++..|+..+.
T Consensus 86 --~~v~viG~~~-~~~~l~~~G~~~vv 109 (321)
T TIGR01456 86 --KRILAVGTGS-VRGVAEGYGFQNVV 109 (321)
T ss_pred --CceEEEeChH-HHHHHHHcCCcccc
Confidence 2678888764 56777789977654
No 237
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=86.20 E-value=1.3 Score=35.73 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=33.4
Q ss_pred CCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCc
Q 023109 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~ 132 (287)
+.+...+.+++++++|++++++|+++...+...+ +.+++.
T Consensus 19 i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~-~~l~~~ 58 (215)
T TIGR01487 19 ISERAIEAIRKAEKKGIPVSLVTGNTVPFARALA-VLIGTS 58 (215)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHH-HHhCCC
Confidence 3456678899999999999999999999888877 777764
No 238
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=85.98 E-value=1.6 Score=35.35 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=31.8
Q ss_pred HHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCc
Q 023109 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (287)
Q Consensus 96 ~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~ 132 (287)
..+.|+.++++|++++++|+++...+...+ +.+++.
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~-~~l~~~ 56 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQ-KALGLT 56 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCC
Confidence 457888999999999999999999999888 878875
No 239
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=85.95 E-value=1.4 Score=35.75 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=33.0
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcc
Q 023109 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~ 133 (287)
.|...+.|++++++|++++++|+++...+...+ ..+++..
T Consensus 22 ~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~ 61 (230)
T PRK01158 22 SLKAVEAIRKAEKLGIPVILATGNVLCFARAAA-KLIGTSG 61 (230)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHH-HHhCCCC
Confidence 345667889999999999999999999888777 7777753
No 240
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=84.50 E-value=1.8 Score=36.30 Aligned_cols=40 Identities=8% Similarity=0.090 Sum_probs=33.4
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcc
Q 023109 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~ 133 (287)
.+...+.+++++++|++++++|+++...+...+ +.+++..
T Consensus 21 ~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~ 60 (272)
T PRK15126 21 GEKTLSTLARLRERDITLTFATGRHVLEMQHIL-GALSLDA 60 (272)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHcCCCC
Confidence 345567899999999999999999999988888 7777753
No 241
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=84.42 E-value=2.1 Score=35.51 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=32.7
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCc
Q 023109 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~ 132 (287)
.+...+.+++++++|+.++++|+++...+...+ +.+++.
T Consensus 18 ~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~-~~~~~~ 56 (256)
T TIGR00099 18 SPSTKEALAKLREKGIKVVLATGRPYKEVKNIL-KELGLD 56 (256)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCC
Confidence 345667899999999999999999998888777 777764
No 242
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=83.91 E-value=5.2 Score=34.93 Aligned_cols=79 Identities=22% Similarity=0.193 Sum_probs=54.7
Q ss_pred CEEEEeCCChHHHHHHHHhhcCCcccc--ceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCC
Q 023109 109 PMALASNSHRATIESKISYQHGWNESF--SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 186 (287)
Q Consensus 109 ~v~l~T~~~~~~~~~~l~~~~gl~~~f--d~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~ 186 (287)
--+++|+....-.-.++ -.+||...| +.|++... .++...|+++..++|. .-..++|||+...-.+|++..|
T Consensus 372 vnVlvTttqLipalaKv-LL~gLg~~fpiENIYSa~k----iGKescFerI~~RFg~-K~~yvvIgdG~eee~aAK~ln~ 445 (468)
T KOG3107|consen 372 VNVLVTTTQLIPALAKV-LLYGLGSSFPIENIYSATK----IGKESCFERIQSRFGR-KVVYVVIGDGVEEEQAAKALNM 445 (468)
T ss_pred eEEEEeccchhHHHHHH-HHHhcCCcccchhhhhhhh----ccHHHHHHHHHHHhCC-ceEEEEecCcHHHHHHHHhhCC
Confidence 34566666433322233 224555444 55665433 3356899999999997 4578999999999999999999
Q ss_pred eEEEECC
Q 023109 187 EVVAVPS 193 (287)
Q Consensus 187 ~~i~v~~ 193 (287)
++.-++.
T Consensus 446 PfwrI~~ 452 (468)
T KOG3107|consen 446 PFWRISS 452 (468)
T ss_pred ceEeecc
Confidence 9988877
No 243
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=83.51 E-value=0.64 Score=38.45 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=12.8
Q ss_pred ccEEEEecCCccccc
Q 023109 9 MSCVILDLDGTLLNT 23 (287)
Q Consensus 9 ~k~iifDlDGTL~d~ 23 (287)
.++++||+||||++.
T Consensus 3 ~~~l~lD~DGTL~~~ 17 (244)
T TIGR00685 3 KRAFFFDYDGTLSEI 17 (244)
T ss_pred cEEEEEecCccccCC
Confidence 468999999999863
No 244
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=82.83 E-value=2.3 Score=34.35 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCc
Q 023109 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (287)
Q Consensus 94 ~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~ 132 (287)
+...+.+++++++|++++++|+++...+...+ +.+++.
T Consensus 18 ~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~-~~l~~~ 55 (225)
T TIGR01482 18 ESALEAIRKAESVGIPVVLVTGNSVQFARALA-KLIGTP 55 (225)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCchHHHHHHH-HHhCCC
Confidence 34556888999999999999999999888777 777753
No 245
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=82.82 E-value=2.5 Score=35.32 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=32.5
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCc
Q 023109 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~ 132 (287)
.|...+.+++++++|+.++++|+++...+...+ +.+++.
T Consensus 22 ~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~-~~l~~~ 60 (272)
T PRK10530 22 LPESLEALARAREAGYKVIIVTGRHHVAIHPFY-QALALD 60 (272)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HhcCCC
Confidence 345567899999999999999999998888877 777765
No 246
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=82.02 E-value=15 Score=27.37 Aligned_cols=99 Identities=20% Similarity=0.213 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHCCCCEEEEeCCChHH-HHHHHH---hhcCCccccc-eeeccCCc-----CCCCCCHHHHHHHHHHcCC
Q 023109 94 PGANRLIKHLSCHGVPMALASNSHRAT-IESKIS---YQHGWNESFS-VIVGSDEV-----RTGKPSPDIFLEAAKRLNM 163 (287)
Q Consensus 94 ~g~~~~l~~l~~~g~~v~l~T~~~~~~-~~~~l~---~~~gl~~~fd-~i~~~~~~-----~~~kp~~~~~~~~~~~l~~ 163 (287)
..+.+.+.+..++|.++.++-++.... +..... ...+...... .+...++. ...-..+...+.+.+...+
T Consensus 22 ~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (138)
T PF13580_consen 22 EKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDI 101 (138)
T ss_dssp HHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCC
Confidence 355667777777888999997774432 332221 2222333332 22222211 0111123444666677778
Q ss_pred CCCcEEEE----eCCHhhHHH---HHHcCCeEEEEC
Q 023109 164 EPSSSLVI----EDSVIGVVA---GKAAGMEVVAVP 192 (287)
Q Consensus 164 ~~~~~l~i----GDs~~Dv~~---a~~aG~~~i~v~ 192 (287)
.|.+++++ |.|++=+.+ |++.|+.++.+.
T Consensus 102 ~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 102 RPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp -TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 88888887 778865544 677799998764
No 247
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=81.94 E-value=2.8 Score=35.63 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccc
Q 023109 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES 134 (287)
Q Consensus 95 g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~ 134 (287)
.+.+.|++++++|++++++|+.+...+.... +.+++..+
T Consensus 22 ~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~-~~Lgl~~p 60 (302)
T PRK12702 22 AARQALAALERRSIPLVLYSLRTRAQLEHLC-RQLRLEHP 60 (302)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHhCCCCe
Confidence 3557899999999999999999999988888 77887643
No 248
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=81.53 E-value=3.3 Score=34.40 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCc
Q 023109 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (287)
Q Consensus 95 g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~ 132 (287)
...+.++.++++|++++++|+++...+...+ +.+|+.
T Consensus 20 ~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~-~~~~~~ 56 (256)
T TIGR01486 20 PAKEVLERLQELGIPVIPCTSKTAAEVEYLR-KELGLE 56 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCC
Confidence 3567889999999999999999999998888 777764
No 249
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=80.85 E-value=2.9 Score=34.84 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=34.2
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcc
Q 023109 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~ 133 (287)
.+...+.|++++++|++++++|+++...+...+ +.+++..
T Consensus 22 ~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~-~~l~~~~ 61 (264)
T COG0561 22 SPETKEALARLREKGVKVVLATGRPLPDVLSIL-EELGLDG 61 (264)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCChHHHHHHH-HHcCCCc
Confidence 345567888999999999999999999999888 8888765
No 250
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=79.56 E-value=8 Score=36.49 Aligned_cols=117 Identities=17% Similarity=0.132 Sum_probs=74.9
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcccc---ceeecc--CCc--------------CCCCCCH
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF---SVIVGS--DEV--------------RTGKPSP 151 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~f---d~i~~~--~~~--------------~~~kp~~ 151 (287)
|++.+..+.+++....|..+-++|+.........- .++|...-+ ....+. ++. +..--.|
T Consensus 492 pprhdsa~tirral~lGv~VkmitgdqlaI~keTg-rrlgmgtnmypss~llG~~~~~~~~~~~v~elie~adgfAgVfp 570 (942)
T KOG0205|consen 492 PPRHDSAETIRRALNLGVNVKMITGDQLAIAKETG-RRLGMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVFP 570 (942)
T ss_pred CCccchHHHHHHHHhccceeeeecchHHHHHHhhh-hhhccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCccccCH
Confidence 45778889999999999999999988776666555 455432111 001111 000 1111234
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCc
Q 023109 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSL 211 (287)
Q Consensus 152 ~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l 211 (287)
+....+.+.+.-...-|-+.||+.||.++.+.|....++.+. ....+..+|.++..+
T Consensus 571 ehKy~iV~~Lq~r~hi~gmtgdgvndapaLKkAdigiava~a---tdaar~asdiVltep 627 (942)
T KOG0205|consen 571 EHKYEIVKILQERKHIVGMTGDGVNDAPALKKADIGIAVADA---TDAARSASDIVLTEP 627 (942)
T ss_pred HHHHHHHHHHhhcCceecccCCCcccchhhcccccceeeccc---hhhhcccccEEEcCC
Confidence 555666777777777899999999999999999877666554 233345556665443
No 251
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=79.25 E-value=6.6 Score=31.48 Aligned_cols=40 Identities=23% Similarity=0.507 Sum_probs=31.0
Q ss_pred CCCcHHHHHHHHHHCCCCEEEEeCCChHH---HHHHHHhhcCCc
Q 023109 92 ALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWN 132 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~l~T~~~~~~---~~~~l~~~~gl~ 132 (287)
..||+.+.++.|+.++.++-.+||++... ....+ .++|+.
T Consensus 24 avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL-~rlgf~ 66 (262)
T KOG3040|consen 24 AVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERL-QRLGFD 66 (262)
T ss_pred cCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHH-HHhCCC
Confidence 56899999999999999999999985443 44455 666654
No 252
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=78.75 E-value=36 Score=28.14 Aligned_cols=96 Identities=13% Similarity=0.146 Sum_probs=64.5
Q ss_pred CCCCcHHHHHHHHHHC---CCCEEEEeCCChHHHHHHHHhhcCCcccc--ceeeccCCcCCCCCCHHHHHHHHHHcCCCC
Q 023109 91 KALPGANRLIKHLSCH---GVPMALASNSHRATIESKISYQHGWNESF--SVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~---g~~v~l~T~~~~~~~~~~l~~~~gl~~~f--d~i~~~~~~~~~kp~~~~~~~~~~~l~~~~ 165 (287)
.+.|+..+.++..+.. |+.+.-+++.+...+++.. + +|-.-.. -..+++. .+..+++.++.+.+..+++
T Consensus 104 ~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~-~-~G~~~vmPlg~pIGsg---~Gi~~~~~I~~I~e~~~vp- 177 (248)
T cd04728 104 TLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLE-D-AGCAAVMPLGSPIGSG---QGLLNPYNLRIIIERADVP- 177 (248)
T ss_pred ccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-H-cCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhCCCc-
Confidence 4678899998888776 9988867777777776554 3 3543221 1333433 2333578888777764433
Q ss_pred CcEEEEeC---CHhhHHHHHHcCCeEEEECCCC
Q 023109 166 SSSLVIED---SVIGVVAGKAAGMEVVAVPSLP 195 (287)
Q Consensus 166 ~~~l~iGD---s~~Dv~~a~~aG~~~i~v~~~~ 195 (287)
+.+|- ++.|+..+.+.|...+++++.-
T Consensus 178 ---VI~egGI~tpeda~~AmelGAdgVlV~SAI 207 (248)
T cd04728 178 ---VIVDAGIGTPSDAAQAMELGADAVLLNTAI 207 (248)
T ss_pred ---EEEeCCCCCHHHHHHHHHcCCCEEEEChHh
Confidence 55554 3589999999999999999853
No 253
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=78.43 E-value=3.7 Score=38.90 Aligned_cols=121 Identities=13% Similarity=-0.010 Sum_probs=66.7
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhh-cCCccccceeeccCCcCCCCCCHHHHHHHHHHcC-CCCCc
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ-HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN-MEPSS 167 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~-~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~-~~~~~ 167 (287)
+.-..++..-|+.++.++....++++.+-+..-+..+.. ..+......++++. -.| .....+.+.+. ....+
T Consensus 710 v~sr~dah~eL~~lR~k~~~aLvi~G~Sl~~cl~yye~Ef~el~~~~~aVv~CR----ctP--tQKA~v~~llq~~t~kr 783 (1051)
T KOG0210|consen 710 VTSRGDAHNELNNLRRKTDCALVIDGESLEFCLKYYEDEFIELVCELPAVVCCR----CTP--TQKAQVVRLLQKKTGKR 783 (1051)
T ss_pred cCCchHHHHHHHHhhcCCCcEEEEcCchHHHHHHHHHHHHHHHHHhcCcEEEEe----cCh--hHHHHHHHHHHHhhCce
Confidence 345677888888888887666666776666544333111 11111223444432 112 22222222222 23478
Q ss_pred EEEEeCCHhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccCcCccc
Q 023109 168 SLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218 (287)
Q Consensus 168 ~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~~~ 218 (287)
+..|||+-||+.|.++|.+..-.+... .....-.||+.+..+..+.+.+
T Consensus 784 vc~IGDGGNDVsMIq~A~~GiGI~gkE--GkQASLAADfSItqF~Hv~rLL 832 (1051)
T KOG0210|consen 784 VCAIGDGGNDVSMIQAADVGIGIVGKE--GKQASLAADFSITQFSHVSRLL 832 (1051)
T ss_pred EEEEcCCCccchheeecccceeeeccc--ccccchhccccHHHHHHHHHHh
Confidence 999999999999998887544333331 1222345577776666555443
No 254
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=77.96 E-value=2.4 Score=33.47 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=32.5
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhc-----CCccccceeeccCCcCCCCCCHHHHHHHHHHcCC
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH-----GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~-----gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~ 163 (287)
+.++-| .+|.+++++|++++++.+.-...--... ..+ .+...||.++..++. -.+-+..+|.
T Consensus 103 EtElWP---nll~~a~~~~ip~~LvNarls~~s~~~~-~~~~~~~r~~l~~f~~i~aqs~~---------da~r~~~lG~ 169 (186)
T PF04413_consen 103 ETELWP---NLLREAKRRGIPVVLVNARLSERSFRRY-RRFPFLFRPLLSRFDRILAQSEA---------DAERFRKLGA 169 (186)
T ss_dssp S----H---HHHHH-----S-EEEEEE---------------HHHHHHGGG-SEEEESSHH---------HHHHHHTTT-
T ss_pred ccccCH---HHHHHHhhcCCCEEEEeeeeccccchhh-hhhHHHHHHHHHhCCEEEECCHH---------HHHHHHHcCC
Confidence 444555 4788889999999999876332211111 111 122457888876532 2667888999
Q ss_pred CCCcEEEEeCCHhhH
Q 023109 164 EPSSSLVIEDSVIGV 178 (287)
Q Consensus 164 ~~~~~l~iGDs~~Dv 178 (287)
+++++...||-.-|.
T Consensus 170 ~~~~v~v~GnlKfd~ 184 (186)
T PF04413_consen 170 PPERVHVTGNLKFDQ 184 (186)
T ss_dssp S--SEEE---GGG--
T ss_pred CcceEEEeCcchhcc
Confidence 999999999977665
No 255
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=77.96 E-value=9.1 Score=32.56 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=32.2
Q ss_pred cCCCCCcHHHHHHHHHHCC-CCEEEEeCCChHHHHHHH
Q 023109 89 KVKALPGANRLIKHLSCHG-VPMALASNSHRATIESKI 125 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g-~~v~l~T~~~~~~~~~~l 125 (287)
+..++|..-++++.+++.| ++++++||++...+...+
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~~L 127 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEEL 127 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHHHh
Confidence 5678999999999999999 799999999996665555
No 256
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=77.87 E-value=1.5 Score=33.08 Aligned_cols=15 Identities=40% Similarity=0.713 Sum_probs=13.3
Q ss_pred cEEEEecCCcccccH
Q 023109 10 SCVILDLDGTLLNTD 24 (287)
Q Consensus 10 k~iifDlDGTL~d~~ 24 (287)
+.+++|+||||+++.
T Consensus 3 ~~lvldld~tl~~~~ 17 (148)
T smart00577 3 KTLVLDLDETLVHST 17 (148)
T ss_pred cEEEEeCCCCeECCC
Confidence 579999999999974
No 257
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=77.35 E-value=2.9 Score=37.19 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=16.1
Q ss_pred CCccEEEEecCCcccccHH
Q 023109 7 KLMSCVILDLDGTLLNTDG 25 (287)
Q Consensus 7 ~~~k~iifDlDGTL~d~~~ 25 (287)
...+.|++|+||||..++.
T Consensus 373 ~n~kiVVsDiDGTITkSD~ 391 (580)
T COG5083 373 NNKKIVVSDIDGTITKSDA 391 (580)
T ss_pred CCCcEEEEecCCcEEehhh
Confidence 4568999999999998864
No 258
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=77.13 E-value=4.5 Score=33.95 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCc
Q 023109 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (287)
Q Consensus 95 g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~ 132 (287)
...+.+++++++|++++++|+++...+...+ +.+++.
T Consensus 28 ~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~-~~l~~~ 64 (271)
T PRK03669 28 PAAPWLTRLREAQVPVILCSSKTAAEMLPLQ-QTLGLQ 64 (271)
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCHHHHHHHH-HHhCCC
Confidence 4557889999999999999999999998888 777774
No 259
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=76.64 E-value=3.9 Score=37.36 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=25.5
Q ss_pred HHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccC
Q 023109 100 IKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD 142 (287)
Q Consensus 100 l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~ 142 (287)
.+.+++.| +.+++|..++.+++..+++++|. |.|++.+
T Consensus 139 ~~v~~~~~-~~~vv~~~PrvMve~Flkeyl~~----d~V~g~E 176 (525)
T PLN02588 139 FQVLKRGG-KRVGVSDLPQVMIDVFLRDYLEI----EVVVGRD 176 (525)
T ss_pred HHHHhhcC-cEEEEecCCHHHHHHHHHHhcCc----ceEeeee
Confidence 34444545 45555669999999999888875 5555543
No 260
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=75.29 E-value=44 Score=27.41 Aligned_cols=82 Identities=15% Similarity=0.218 Sum_probs=52.9
Q ss_pred CCCCEEEEeCC---ChHHHHHHHHhhc-CCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCH--hhHH
Q 023109 106 HGVPMALASNS---HRATIESKISYQH-GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV--IGVV 179 (287)
Q Consensus 106 ~g~~v~l~T~~---~~~~~~~~l~~~~-gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~--~Dv~ 179 (287)
.++.+.+++.+ ....++......+ .+. .|.++..+. ...-|-|..-++.++..|++ |+.|||.+ .+-.
T Consensus 30 edI~vrv~gsGaKm~pe~~~~~~~~~~~~~~--pDf~i~isP-N~a~PGP~~ARE~l~~~~iP---~IvI~D~p~~K~~d 103 (277)
T PRK00994 30 EDIDVRVVGSGAKMGPEEVEEVVKKMLEEWK--PDFVIVISP-NPAAPGPKKAREILKAAGIP---CIVIGDAPGKKVKD 103 (277)
T ss_pred cCceEEEeccCCCCCHHHHHHHHHHHHHhhC--CCEEEEECC-CCCCCCchHHHHHHHhcCCC---EEEEcCCCccchHH
Confidence 37888888766 3344443331111 333 344333222 23556777888999888885 99999999 4668
Q ss_pred HHHHcCCeEEEECC
Q 023109 180 AGKAAGMEVVAVPS 193 (287)
Q Consensus 180 ~a~~aG~~~i~v~~ 193 (287)
..++.|...+.+..
T Consensus 104 ~l~~~g~GYIivk~ 117 (277)
T PRK00994 104 AMEEQGLGYIIVKA 117 (277)
T ss_pred HHHhcCCcEEEEec
Confidence 88888988887765
No 261
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=74.28 E-value=46 Score=28.81 Aligned_cols=96 Identities=11% Similarity=0.122 Sum_probs=66.5
Q ss_pred CCCCcHHHHHHHHHHC---CCCEEEEeCCChHHHHHHHHhhcCCcc--ccceeeccCCcCCCCCCHHHHHHHHHHcCCCC
Q 023109 91 KALPGANRLIKHLSCH---GVPMALASNSHRATIESKISYQHGWNE--SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~---g~~v~l~T~~~~~~~~~~l~~~~gl~~--~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~ 165 (287)
.+.|+..++++..+.. |+.+.++++.+...+++.. + +|-.. ..-..+++ +.+-.+|+.++...+...++
T Consensus 178 ~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~-~-~g~~avmPl~~pIGs---g~gv~~p~~i~~~~e~~~vp- 251 (326)
T PRK11840 178 TLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLE-D-AGAVAVMPLGAPIGS---GLGIQNPYTIRLIVEGATVP- 251 (326)
T ss_pred CcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-h-cCCEEEeeccccccC---CCCCCCHHHHHHHHHcCCCc-
Confidence 4678888888888776 9999788888887776555 3 34310 11233332 22334788888888874433
Q ss_pred CcEEEEeCCH---hhHHHHHHcCCeEEEECCCC
Q 023109 166 SSSLVIEDSV---IGVVAGKAAGMEVVAVPSLP 195 (287)
Q Consensus 166 ~~~l~iGDs~---~Dv~~a~~aG~~~i~v~~~~ 195 (287)
+.+|-+. .|+..|-+.|+..++++++-
T Consensus 252 ---VivdAGIg~~sda~~AmelGadgVL~nSaI 281 (326)
T PRK11840 252 ---VLVDAGVGTASDAAVAMELGCDGVLMNTAI 281 (326)
T ss_pred ---EEEeCCCCCHHHHHHHHHcCCCEEEEccee
Confidence 6666544 79999999999999999953
No 262
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=74.25 E-value=1.9 Score=33.22 Aligned_cols=15 Identities=40% Similarity=0.713 Sum_probs=13.2
Q ss_pred cEEEEecCCcccccH
Q 023109 10 SCVILDLDGTLLNTD 24 (287)
Q Consensus 10 k~iifDlDGTL~d~~ 24 (287)
+.+++|+|+||+.+.
T Consensus 2 ~~lvlDLDeTLi~~~ 16 (162)
T TIGR02251 2 KTLVLDLDETLVHST 16 (162)
T ss_pred cEEEEcCCCCcCCCC
Confidence 579999999999883
No 263
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=74.11 E-value=2.7 Score=33.29 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=17.1
Q ss_pred cEEEEecCCcccccHHHHHHHHHHHH
Q 023109 10 SCVILDLDGTLLNTDGMFSEVLKTFL 35 (287)
Q Consensus 10 k~iifDlDGTL~d~~~~~~~~~~~~~ 35 (287)
.+++||.||||..........+.+.+
T Consensus 12 ~l~lfdvdgtLt~~r~~~~~e~~~~l 37 (252)
T KOG3189|consen 12 TLCLFDVDGTLTPPRQKVTPEMLEFL 37 (252)
T ss_pred eEEEEecCCccccccccCCHHHHHHH
Confidence 37899999999976444433333333
No 264
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=72.80 E-value=6 Score=32.42 Aligned_cols=41 Identities=20% Similarity=0.067 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHcCCC---CCcEEEEeCCHhhHHHHHHcCCe
Q 023109 147 GKPSPDIFLEAAKRLNME---PSSSLVIEDSVIGVVAGKAAGME 187 (287)
Q Consensus 147 ~kp~~~~~~~~~~~l~~~---~~~~l~iGDs~~Dv~~a~~aG~~ 187 (287)
...|..+.+.+++.++.. +.-++|+||...|-.+.+.+.-.
T Consensus 163 ~~~KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~~~ 206 (235)
T PF02358_consen 163 GVNKGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALREL 206 (235)
T ss_dssp T--HHHHHHHHHTTS---------EEEEESSHHHHHHHHTTTTS
T ss_pred CCChHHHHHHHHHhcCccccccceeEEecCCCCCHHHHHHHHhc
Confidence 334677888888888765 77899999999999998886653
No 265
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=72.36 E-value=23 Score=25.94 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=49.6
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHH-HHHHHHhhcCCcc---------ccceeeccCCcCCCCCCHHHHHHHH
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT-IESKISYQHGWNE---------SFSVIVGSDEVRTGKPSPDIFLEAA 158 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~-~~~~l~~~~gl~~---------~fd~i~~~~~~~~~kp~~~~~~~~~ 158 (287)
.+-.++++...|..|++.|++++++|++.... +...| +.+.+.. .|+.+..++. .+-..|...-
T Consensus 42 e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L-~~fkvk~~Gvlkps~e~ft~~~~g~g-----sklghfke~~ 115 (144)
T KOG4549|consen 42 EMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGL-ETFKVKQTGVLKPSLEEFTFEAVGDG-----SKLGHFKEFT 115 (144)
T ss_pred eeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHH-HHhccCcccccchhhhcCceeeecCc-----ccchhHHHHh
Confidence 45678999999999999999999999986554 45555 5554321 1222222221 1223444444
Q ss_pred HHcCCCCCcEEEEeCCH
Q 023109 159 KRLNMEPSSSLVIEDSV 175 (287)
Q Consensus 159 ~~l~~~~~~~l~iGDs~ 175 (287)
..-++.-.+..++.|..
T Consensus 116 n~s~~~~k~~~~fdDes 132 (144)
T KOG4549|consen 116 NNSNSIEKNKQVFDDES 132 (144)
T ss_pred hccCcchhceeeecccc
Confidence 55555555667777655
No 266
>PLN03017 trehalose-phosphatase
Probab=69.58 E-value=3.5 Score=36.25 Aligned_cols=67 Identities=12% Similarity=-0.092 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHcCCCC---CcEEEEeCCHhhHHHHHHcC----CeEEEECCCCCccccccCCcEEeCCccCcCcccc
Q 023109 149 PSPDIFLEAAKRLNMEP---SSSLVIEDSVIGVVAGKAAG----MEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (287)
Q Consensus 149 p~~~~~~~~~~~l~~~~---~~~l~iGDs~~Dv~~a~~aG----~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~~~~ 219 (287)
.|+..++.+++.++... .-.+|+||...|-.+.+... ...+.|... .....|.+.+++..++...+.
T Consensus 283 dKG~Av~~LL~~l~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~VG~~----~k~T~A~y~L~dp~eV~~fL~ 356 (366)
T PLN03017 283 DKGKALEFLLESLGFGNTNNVFPVYIGDDRTDEDAFKMLRDRGEGFGILVSKF----PKDTDASYSLQDPSEVMDFLA 356 (366)
T ss_pred CHHHHHHHHHHhcccccCCCceEEEeCCCCccHHHHHHHhhcCCceEEEECCC----CCCCcceEeCCCHHHHHHHHH
Confidence 45677888888877543 35899999999988887662 233444321 113667888999988866543
No 267
>PRK00208 thiG thiazole synthase; Reviewed
Probab=68.08 E-value=69 Score=26.57 Aligned_cols=96 Identities=11% Similarity=0.124 Sum_probs=63.6
Q ss_pred CCCCcHHHHHHHHHHC---CCCEEEEeCCChHHHHHHHHhhcCCcccc--ceeeccCCcCCCCCCHHHHHHHHHHcCCCC
Q 023109 91 KALPGANRLIKHLSCH---GVPMALASNSHRATIESKISYQHGWNESF--SVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~---g~~v~l~T~~~~~~~~~~l~~~~gl~~~f--d~i~~~~~~~~~kp~~~~~~~~~~~l~~~~ 165 (287)
.+.|+..+.++..+.. |+.+.-+++.+...+++.. + +|-.-.. -..+++. .+..+++.++.+.+..+++
T Consensus 104 ~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~-~-~G~~~vmPlg~pIGsg---~gi~~~~~i~~i~e~~~vp- 177 (250)
T PRK00208 104 TLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLE-E-AGCAAVMPLGAPIGSG---LGLLNPYNLRIIIEQADVP- 177 (250)
T ss_pred CCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-H-cCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhcCCe-
Confidence 3578888888887776 9988867777777766544 3 3543221 1334433 2333477777777764433
Q ss_pred CcEEEEeCC---HhhHHHHHHcCCeEEEECCCC
Q 023109 166 SSSLVIEDS---VIGVVAGKAAGMEVVAVPSLP 195 (287)
Q Consensus 166 ~~~l~iGDs---~~Dv~~a~~aG~~~i~v~~~~ 195 (287)
+.+|-+ +.|+..+.+.|...+++++.-
T Consensus 178 ---VIveaGI~tpeda~~AmelGAdgVlV~SAI 207 (250)
T PRK00208 178 ---VIVDAGIGTPSDAAQAMELGADAVLLNTAI 207 (250)
T ss_pred ---EEEeCCCCCHHHHHHHHHcCCCEEEEChHh
Confidence 555544 479999999999999999953
No 268
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=65.66 E-value=20 Score=31.27 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=53.7
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~ 170 (287)
.-+||+.-+|.++. +.+.++++|....-.+...+ +.+.-..++..-...+......+. . .+=+..++.+++.+++
T Consensus 214 ~kRPgvD~FL~~~a-~~yEIVi~sse~gmt~~pl~-d~lDP~g~IsYkLfr~~t~y~~G~--H-vKdls~LNRdl~kViv 288 (393)
T KOG2832|consen 214 KKRPGVDYFLGHLA-KYYEIVVYSSEQGMTVFPLL-DALDPKGYISYKLFRGATKYEEGH--H-VKDLSKLNRDLQKVIV 288 (393)
T ss_pred ccCchHHHHHHhhc-ccceEEEEecCCccchhhhH-hhcCCcceEEEEEecCcccccCcc--c-hhhhhhhccccceeEE
Confidence 35799999999997 45999999999887777777 665544445444443333222221 0 2336778889999998
Q ss_pred EeCCH
Q 023109 171 IEDSV 175 (287)
Q Consensus 171 iGDs~ 175 (287)
|+=..
T Consensus 289 Vd~d~ 293 (393)
T KOG2832|consen 289 VDFDA 293 (393)
T ss_pred EEccc
Confidence 87544
No 269
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=64.99 E-value=72 Score=26.26 Aligned_cols=95 Identities=15% Similarity=0.159 Sum_probs=58.1
Q ss_pred CCCCcHHHHHH---HHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccC-CcCCCCCCHHHHHHHHHHcCCCCC
Q 023109 91 KALPGANRLIK---HLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD-EVRTGKPSPDIFLEAAKRLNMEPS 166 (287)
Q Consensus 91 ~~~~g~~~~l~---~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~-~~~~~kp~~~~~~~~~~~l~~~~~ 166 (287)
.+.|+..++++ .|.+.|+.|.-.++.+...+++.. + .|.... ...++. ..+.+--.+..++.++++..++
T Consensus 104 ~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~-d-~Gcaav--MPlgsPIGSg~Gi~n~~~l~~i~~~~~vP-- 177 (247)
T PF05690_consen 104 TLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLE-D-AGCAAV--MPLGSPIGSGRGIQNPYNLRIIIERADVP-- 177 (247)
T ss_dssp T--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHH-H-TT-SEB--EEBSSSTTT---SSTHHHHHHHHHHGSSS--
T ss_pred CcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHH-H-CCCCEE--EecccccccCcCCCCHHHHHHHHHhcCCc--
Confidence 45688777775 466789999999998888776444 3 353211 111221 1234555678899999999776
Q ss_pred cEEEEeCC---HhhHHHHHHcCCeEEEECC
Q 023109 167 SSLVIEDS---VIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 167 ~~l~iGDs---~~Dv~~a~~aG~~~i~v~~ 193 (287)
+.|+-+ ++|...|-+.|+..+++|+
T Consensus 178 --vIvDAGiG~pSdaa~AMElG~daVLvNT 205 (247)
T PF05690_consen 178 --VIVDAGIGTPSDAAQAMELGADAVLVNT 205 (247)
T ss_dssp --BEEES---SHHHHHHHHHTT-SEEEESH
T ss_pred --EEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence 455544 4899999999999999998
No 270
>PF01687 Flavokinase: Riboflavin kinase; InterPro: IPR015865 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents the riboflavin kinase domains from bacteria and eukaryotes.; GO: 0008531 riboflavin kinase activity, 0009231 riboflavin biosynthetic process; PDB: 1Q9S_A 1NB9_A 1P4M_A 1NB0_A 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A ....
Probab=63.35 E-value=3.3 Score=30.38 Aligned_cols=24 Identities=33% Similarity=0.724 Sum_probs=19.7
Q ss_pred CCceeeccceeeeccCccccchhHh
Q 023109 235 EPWYIGGPVVKGLGRGSKLICLQRV 259 (287)
Q Consensus 235 ~p~~~~~~~~~~~~~~~~~l~~~~~ 259 (287)
.|....|.|.+|.++ .+.||.|||
T Consensus 4 ~py~i~G~Vv~G~~~-Gr~lGfPTA 27 (125)
T PF01687_consen 4 RPYSISGTVVHGFGR-GRKLGFPTA 27 (125)
T ss_dssp SSEEEEEEEEC-SSC-CCCTTS-EE
T ss_pred CCEEEEEEEEeCCcc-ccccCCccc
Confidence 578899999999999 677899999
No 271
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=62.47 E-value=91 Score=26.00 Aligned_cols=95 Identities=13% Similarity=0.101 Sum_probs=63.9
Q ss_pred CCCCcHHHHHHH---HHHCCCCEEEEeCCChHHHHHHHHhhcCCccc--cceeeccCCcCCCCCCHHHHHHHHHHcCCCC
Q 023109 91 KALPGANRLIKH---LSCHGVPMALASNSHRATIESKISYQHGWNES--FSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (287)
Q Consensus 91 ~~~~g~~~~l~~---l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~--fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~ 165 (287)
.+.|+..++++. |-+.|+.|.-.++.+...+++.. ..|.... .-.-++ .+.+-..+..++.+++...++
T Consensus 118 ~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLe--d~Gc~aVMPlgsPIG---Sg~Gl~n~~~l~~i~e~~~vp- 191 (267)
T CHL00162 118 YLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLE--DIGCATVMPLGSPIG---SGQGLQNLLNLQIIIENAKIP- 191 (267)
T ss_pred ccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHH--HcCCeEEeeccCccc---CCCCCCCHHHHHHHHHcCCCc-
Confidence 456777777754 55789999999998888776443 3343211 111222 234555677777777765544
Q ss_pred CcEEEEeCCH---hhHHHHHHcCCeEEEECCC
Q 023109 166 SSSLVIEDSV---IGVVAGKAAGMEVVAVPSL 194 (287)
Q Consensus 166 ~~~l~iGDs~---~Dv~~a~~aG~~~i~v~~~ 194 (287)
+.+|-+. +|+..+-+.|+..++++++
T Consensus 192 ---VivdAGIgt~sDa~~AmElGaDgVL~nSa 220 (267)
T CHL00162 192 ---VIIDAGIGTPSEASQAMELGASGVLLNTA 220 (267)
T ss_pred ---EEEeCCcCCHHHHHHHHHcCCCEEeecce
Confidence 5555443 8999999999999999985
No 272
>PLN02151 trehalose-phosphatase
Probab=62.24 E-value=5.7 Score=34.80 Aligned_cols=67 Identities=13% Similarity=-0.037 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHcCCCCC---cEEEEeCCHhhHHHHHHc-----CCeEEEECCCCCccccccCCcEEeCCccCcCcccc
Q 023109 148 KPSPDIFLEAAKRLNMEPS---SSLVIEDSVIGVVAGKAA-----GMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (287)
Q Consensus 148 kp~~~~~~~~~~~l~~~~~---~~l~iGDs~~Dv~~a~~a-----G~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~~~~ 219 (287)
-.|+..++.+++.++.... -.+|+||...|-.+.+.. |+ .+.|..+ .....|.+.+++..++...+.
T Consensus 268 ~dKG~Av~~Ll~~~~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~-gI~Vg~~----~k~T~A~y~L~dp~eV~~~L~ 342 (354)
T PLN02151 268 WDKGKALEFLLESLGYANCTDVFPIYIGDDRTDEDAFKILRDKKQGL-GILVSKY----AKETNASYSLQEPDEVMEFLE 342 (354)
T ss_pred CCHHHHHHHHHHhcccccCCCCeEEEEcCCCcHHHHHHHHhhcCCCc-cEEeccC----CCCCcceEeCCCHHHHHHHHH
Confidence 3567888999988875532 379999999998888764 32 2333321 123467899999998866543
No 273
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=62.15 E-value=15 Score=30.29 Aligned_cols=44 Identities=9% Similarity=0.007 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeec
Q 023109 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG 140 (287)
Q Consensus 95 g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~ 140 (287)
.+.+++++++++|+.++++|+.+...+...+ +.+++.. .+.+++
T Consensus 25 ~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~-~~~~~~~-p~~~I~ 68 (249)
T TIGR01485 25 RLNALLEDHRGEDSLLVYSTGRSPHSYKELQ-KQKPLLT-PDIWVT 68 (249)
T ss_pred HHHHHHHHhhccCceEEEEcCCCHHHHHHHH-hcCCCCC-CCEEEE
Confidence 4456888899999999999999999988887 6666543 333443
No 274
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=61.85 E-value=30 Score=28.19 Aligned_cols=91 Identities=11% Similarity=0.099 Sum_probs=48.5
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCCChH---HHHHHHHhhcCCcc----ccceeeccCCcCCCCCCHHHHHHHHHHcC-CC
Q 023109 93 LPGANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNE----SFSVIVGSDEVRTGKPSPDIFLEAAKRLN-ME 164 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~~~~---~~~~~l~~~~gl~~----~fd~i~~~~~~~~~kp~~~~~~~~~~~l~-~~ 164 (287)
.|.....|..+++ +...|++-+... .....+ ...|+.- .|=.+.+ ...+|. .....+++... ..
T Consensus 136 lpre~aaLa~~rE--yseti~~rs~d~~~~~~~~~L-~e~glt~v~garf~~v~~---as~gKg--~Aa~~ll~~y~rl~ 207 (274)
T COG3769 136 LPREQAALAMLRE--YSETIIWRSSDERMAQFTARL-NERGLTFVHGARFWHVLD---ASAGKG--QAANWLLETYRRLG 207 (274)
T ss_pred CChHHhHHHHHHH--hhhheeecccchHHHHHHHHH-HhcCceEEeccceEEEec---cccCcc--HHHHHHHHHHHhcC
Confidence 3444555666665 455666544333 233445 4455531 1112221 222333 34444444332 33
Q ss_pred CCc-EEEEeCCHhhHHHHHHcCCeEEEE
Q 023109 165 PSS-SLVIEDSVIGVVAGKAAGMEVVAV 191 (287)
Q Consensus 165 ~~~-~l~iGDs~~Dv~~a~~aG~~~i~v 191 (287)
+.+ ++.+||++||+++....-..+++-
T Consensus 208 ~~r~t~~~GDg~nD~Pl~ev~d~AfiV~ 235 (274)
T COG3769 208 GARTTLGLGDGPNDAPLLEVMDYAFIVK 235 (274)
T ss_pred ceeEEEecCCCCCcccHHHhhhhheeec
Confidence 445 889999999999999887766654
No 275
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=60.59 E-value=11 Score=33.14 Aligned_cols=16 Identities=31% Similarity=0.229 Sum_probs=12.8
Q ss_pred CccEEEEecCCccccc
Q 023109 8 LMSCVILDLDGTLLNT 23 (287)
Q Consensus 8 ~~k~iifDlDGTL~d~ 23 (287)
..++|-||=|+||++.
T Consensus 146 ~L~LvTFDgDvTLY~D 161 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYED 161 (408)
T ss_pred CceEEEEcCCcccccC
Confidence 5678888888888765
No 276
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=58.96 E-value=70 Score=29.90 Aligned_cols=89 Identities=8% Similarity=0.040 Sum_probs=51.3
Q ss_pred CcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeC
Q 023109 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED 173 (287)
Q Consensus 94 ~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGD 173 (287)
-++...|..++..+-++++++-.+....-..+.+.+++. ++.+...+.. +.....+-++.-|+. ++|||
T Consensus 84 ~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~--i~~~~~~~~~-----e~~~~~~~l~~~G~~----~viG~ 152 (526)
T TIGR02329 84 FDVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLD--IVQRSYVTEE-----DARSCVNDLRARGIG----AVVGA 152 (526)
T ss_pred hhHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc--eEEEEecCHH-----HHHHHHHHHHHCCCC----EEECC
Confidence 356666777777777899997654433223332555553 2222211100 111112223334543 77899
Q ss_pred CHhhHHHHHHcCCeEEEECCC
Q 023109 174 SVIGVVAGKAAGMEVVAVPSL 194 (287)
Q Consensus 174 s~~Dv~~a~~aG~~~i~v~~~ 194 (287)
... ...|+++|+..+.+.++
T Consensus 153 ~~~-~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 153 GLI-TDLAEQAGLHGVFLYSA 172 (526)
T ss_pred hHH-HHHHHHcCCceEEEecH
Confidence 965 78899999999999874
No 277
>PTZ00445 p36-lilke protein; Provisional
Probab=58.79 E-value=4.2 Score=32.73 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=14.5
Q ss_pred CCccEEEEecCCcccc
Q 023109 7 KLMSCVILDLDGTLLN 22 (287)
Q Consensus 7 ~~~k~iifDlDGTL~d 22 (287)
..||+|++|+|.||+.
T Consensus 41 ~GIk~Va~D~DnTlI~ 56 (219)
T PTZ00445 41 CGIKVIASDFDLTMIT 56 (219)
T ss_pred cCCeEEEecchhhhhh
Confidence 4689999999999997
No 278
>PLN02887 hydrolase family protein
Probab=57.63 E-value=18 Score=34.20 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=35.2
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCc
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~ 132 (287)
.+.+...+.+++++++|+.++++|+.+...+...+ +.+++.
T Consensus 325 ~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l-~~L~l~ 365 (580)
T PLN02887 325 QISETNAKALKEALSRGVKVVIATGKARPAVIDIL-KMVDLA 365 (580)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHhCcc
Confidence 45677889999999999999999999999888777 666653
No 279
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=57.44 E-value=75 Score=27.71 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=53.4
Q ss_pred HHHHHHHHHHC-CCC-EEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHc-CCCCCcEEEEe
Q 023109 96 ANRLIKHLSCH-GVP-MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL-NMEPSSSLVIE 172 (287)
Q Consensus 96 ~~~~l~~l~~~-g~~-v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l-~~~~~~~l~iG 172 (287)
...+++++++. ++. .+++|+......+..+ +.+++...++..++++.....+--+..+.++.+.+ ...|+=++..|
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~~g 94 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQHREMLDQVL-DLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDIVLVQG 94 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHH-HhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 34567777765 343 5677888887777777 55787633333332211111111112222222222 24466677778
Q ss_pred CCHh---hHHHHHHcCCeEEEECC
Q 023109 173 DSVI---GVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 173 Ds~~---Dv~~a~~aG~~~i~v~~ 193 (287)
|... -..+|+..|++++.+..
T Consensus 95 d~~~~la~a~aa~~~~ipv~h~~~ 118 (365)
T TIGR00236 95 DTTTTLAGALAAFYLQIPVGHVEA 118 (365)
T ss_pred CchHHHHHHHHHHHhCCCEEEEeC
Confidence 8764 44567778999987754
No 280
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=56.00 E-value=2.3 Score=35.44 Aligned_cols=93 Identities=12% Similarity=0.122 Sum_probs=60.3
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCC-ccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcE
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW-NESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl-~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~ 168 (287)
+.-+|++.++|....+. +.+++.|++...++..++ ..+.- ...+...+..+.+.... ..|.+-+..+|.+.+++
T Consensus 130 V~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~-D~LD~~~~i~~~RlyR~~C~~~~---g~yvKdls~~~~dL~~v 204 (262)
T KOG1605|consen 130 VRKRPHVDEFLSRVSKW-YELVLFTASLEVYADPLL-DILDPDRKIISHRLYRDSCTLKD---GNYVKDLSVLGRDLSKV 204 (262)
T ss_pred EEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHH-HHccCCCCeeeeeecccceEeEC---CcEEEEcceeccCcccE
Confidence 55689999999998887 899999999999988888 66543 22233333222221111 11122234566678899
Q ss_pred EEEeCCHhhHHHHHHcCCe
Q 023109 169 LVIEDSVIGVVAGKAAGME 187 (287)
Q Consensus 169 l~iGDs~~Dv~~a~~aG~~ 187 (287)
+.|+||+.-..+=-..|++
T Consensus 205 iIiDNsP~sy~~~p~NgIp 223 (262)
T KOG1605|consen 205 IIVDNSPQSYRLQPENGIP 223 (262)
T ss_pred EEEcCChHHhccCccCCCc
Confidence 9999999766555555544
No 281
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=55.91 E-value=36 Score=33.97 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=34.6
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCcccc
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF 135 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~f 135 (287)
-++.+...+.+++|.+.+++.+.+|+-+--.+-.+. ++.|+-...
T Consensus 704 NkLK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVa-keCgmi~p~ 748 (1140)
T KOG0208|consen 704 NKLKEETKRVIDELNRANIRTVMCTGDNLLTAISVA-KECGMIEPQ 748 (1140)
T ss_pred cccccccHHHHHHHHhhcceEEEEcCCchheeeehh-hcccccCCC
Confidence 467889999999999999999999988766555555 556654433
No 282
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=55.65 E-value=1.2e+02 Score=25.27 Aligned_cols=107 Identities=11% Similarity=0.102 Sum_probs=58.3
Q ss_pred HHHHHHHCCCCEEEEeCCChHHHH-----HHHHhhcCCc-cccceeeccCCc------CCCCCCHHHHHHHHHHcCCCCC
Q 023109 99 LIKHLSCHGVPMALASNSHRATIE-----SKISYQHGWN-ESFSVIVGSDEV------RTGKPSPDIFLEAAKRLNMEPS 166 (287)
Q Consensus 99 ~l~~l~~~g~~v~l~T~~~~~~~~-----~~l~~~~gl~-~~fd~i~~~~~~------~~~kp~~~~~~~~~~~l~~~~~ 166 (287)
..+.++ +|-+++++-++.....- ... ..+|.. ..+..++.+.+. .....+++.....+...++.+.
T Consensus 42 ~~~~l~-~ggrl~~~GaGtSg~la~~da~e~~-~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~l~~~ 119 (257)
T cd05007 42 AAERLR-AGGRLIYVGAGTSGRLGVLDASELP-PTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINLTER 119 (257)
T ss_pred HHHHHH-cCCEEEEEcCcHHHHHHHHHHHhcc-ccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcCCCCC
Confidence 344454 45577777666443221 222 344442 234444443321 2333455666777777787777
Q ss_pred cEEEE----eCCH---hhHHHHHHcCCeEEEECCCCCccccccCCcEEe
Q 023109 167 SSLVI----EDSV---IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI 208 (287)
Q Consensus 167 ~~l~i----GDs~---~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~ 208 (287)
+++.+ |.++ .=++.|++.|++++.+..... ......+|+.+
T Consensus 120 DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~-s~L~~~aD~~I 167 (257)
T cd05007 120 DVVIGIAASGRTPYVLGALRYARARGALTIGIACNPG-SPLLQLADIAI 167 (257)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCC-ChhHHhCCEEE
Confidence 66654 5555 356678889999999877332 22333455444
No 283
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=54.86 E-value=13 Score=21.62 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=25.7
Q ss_pred HHHHHHHHHCCCCEEEEeCCChHHHHHHH
Q 023109 97 NRLIKHLSCHGVPMALASNSHRATIESKI 125 (287)
Q Consensus 97 ~~~l~~l~~~g~~v~l~T~~~~~~~~~~l 125 (287)
.++.++|.+.|++.+-+|.+.+...++++
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL 37 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKL 37 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHH
Confidence 46788899999999999999999988887
No 284
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=54.02 E-value=25 Score=33.78 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=32.1
Q ss_pred CcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCc
Q 023109 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (287)
Q Consensus 94 ~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~ 132 (287)
+...+.+++++++|++++++|+.+...+.... +.+++.
T Consensus 436 ~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~-~~Lgl~ 473 (694)
T PRK14502 436 STALDALRLLKDKELPLVFCSAKTMGEQDLYR-NELGIK 473 (694)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHH-HHcCCC
Confidence 34567899999999999999999999888777 777764
No 285
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=53.17 E-value=1.1e+02 Score=24.06 Aligned_cols=87 Identities=17% Similarity=0.099 Sum_probs=44.2
Q ss_pred HHHHHHHHHHC--CCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeC
Q 023109 96 ANRLIKHLSCH--GVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED 173 (287)
Q Consensus 96 ~~~~l~~l~~~--g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGD 173 (287)
+..++++++++ +.++.+.|.++...... . +.+ .+.....+. +--.+...++.++.+ .|+-++.++.
T Consensus 37 ~~~Li~~l~~~~p~~~illT~~T~tg~~~~-~-~~~--~~~v~~~~~------P~D~~~~~~rfl~~~--~P~~~i~~Et 104 (186)
T PF04413_consen 37 ARPLIKRLRKQRPDLRILLTTTTPTGREMA-R-KLL--PDRVDVQYL------PLDFPWAVRRFLDHW--RPDLLIWVET 104 (186)
T ss_dssp HHHHHHHHTT---TS-EEEEES-CCHHHHH-H-GG---GGG-SEEE---------SSHHHHHHHHHHH----SEEEEES-
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCchHHHH-H-HhC--CCCeEEEEe------CccCHHHHHHHHHHh--CCCEEEEEcc
Confidence 55678888876 78888887765443211 1 221 111223332 122356777777775 4888899988
Q ss_pred CH--hhHHHHHHcCCeEEEECCC
Q 023109 174 SV--IGVVAGKAAGMEVVAVPSL 194 (287)
Q Consensus 174 s~--~Dv~~a~~aG~~~i~v~~~ 194 (287)
.. |=+..+++.|++++++|..
T Consensus 105 ElWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 105 ELWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp ---HHHHHH-----S-EEEEEE-
T ss_pred ccCHHHHHHHhhcCCCEEEEeee
Confidence 77 7888899999999999983
No 286
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=50.99 E-value=1.1e+02 Score=28.68 Aligned_cols=89 Identities=10% Similarity=0.014 Sum_probs=51.3
Q ss_pred CcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeC
Q 023109 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED 173 (287)
Q Consensus 94 ~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGD 173 (287)
-++...|..++..+-++++++-.+....-..+.+.+++. ++.....+.. +.....+-++..|+. ++|||
T Consensus 94 ~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~--i~~~~~~~~~-----e~~~~v~~lk~~G~~----~vvG~ 162 (538)
T PRK15424 94 FDVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLR--IEQRSYVTEE-----DARGQINELKANGIE----AVVGA 162 (538)
T ss_pred hHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc--eEEEEecCHH-----HHHHHHHHHHHCCCC----EEEcC
Confidence 356666666777777899998664433222332555553 2222211100 111122333444544 77899
Q ss_pred CHhhHHHHHHcCCeEEEECCC
Q 023109 174 SVIGVVAGKAAGMEVVAVPSL 194 (287)
Q Consensus 174 s~~Dv~~a~~aG~~~i~v~~~ 194 (287)
... ...|+++|+..+.+.++
T Consensus 163 ~~~-~~~A~~~g~~g~~~~s~ 182 (538)
T PRK15424 163 GLI-TDLAEEAGMTGIFIYSA 182 (538)
T ss_pred chH-HHHHHHhCCceEEecCH
Confidence 776 78999999999998764
No 287
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=50.91 E-value=23 Score=27.51 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHCCCCEEEEeCCChHH-HHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeC
Q 023109 95 GANRLIKHLSCHGVPMALASNSHRAT-IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED 173 (287)
Q Consensus 95 g~~~~l~~l~~~g~~v~l~T~~~~~~-~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGD 173 (287)
++.+.|..++..+-++++++..+... ....- +.+|+. +...... +++-+...++.+.-.. --+.||+
T Consensus 65 Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~-~ll~~~--i~~~~~~--------~~~e~~~~i~~~~~~G-~~viVGg 132 (176)
T PF06506_consen 65 DILRALAKAKKYGPKIAVVGYPNIIPGLESIE-ELLGVD--IKIYPYD--------SEEEIEAAIKQAKAEG-VDVIVGG 132 (176)
T ss_dssp HHHHHHHHCCCCTSEEEEEEESS-SCCHHHHH-HHHT-E--EEEEEES--------SHHHHHHHHHHHHHTT---EEEES
T ss_pred HHHHHHHHHHhcCCcEEEEecccccHHHHHHH-HHhCCc--eEEEEEC--------CHHHHHHHHHHHHHcC-CcEEECC
Confidence 34444455555677889887654433 33222 555552 2221111 1233344444432121 2377899
Q ss_pred CHhhHHHHHHcCCeEEEECCC
Q 023109 174 SVIGVVAGKAAGMEVVAVPSL 194 (287)
Q Consensus 174 s~~Dv~~a~~aG~~~i~v~~~ 194 (287)
+.. ...|++.|++++.+.++
T Consensus 133 ~~~-~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 133 GVV-CRLARKLGLPGVLIESG 152 (176)
T ss_dssp HHH-HHHHHHTTSEEEESS--
T ss_pred HHH-HHHHHHcCCcEEEEEec
Confidence 864 78899999999998874
No 288
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=50.11 E-value=34 Score=27.87 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=29.7
Q ss_pred HHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeec
Q 023109 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG 140 (287)
Q Consensus 99 ~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~ 140 (287)
.++ ++++|+.++++|+++...+...+ ..+++. ..+.+++
T Consensus 23 ~~~-~~~~gi~~viaTGR~~~~v~~~~-~~l~l~-~~~~~I~ 61 (236)
T TIGR02471 23 LLR-GSGDAVGFGIATGRSVESAKSRY-AKLNLP-SPDVLIA 61 (236)
T ss_pred HHH-hcCCCceEEEEeCCCHHHHHHHH-HhCCCC-CCCEEEE
Confidence 455 57889999999999999999888 777764 2344444
No 289
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=49.13 E-value=26 Score=28.41 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=30.1
Q ss_pred HHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeecc
Q 023109 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS 141 (287)
Q Consensus 96 ~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~ 141 (287)
+.++|..|++. +.|+++|+++...+..-+ ....+...||.++..
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~eQl-~~~~~~~~fdy~f~e 44 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQEQL-GGDDVLDNFDYVFPE 44 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHHHHH-STTTHHHH-SEEEEG
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHHHHH-cccchHhhCCeeecC
Confidence 35788989876 999999999988877666 222344567766643
No 290
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=45.87 E-value=1.9e+02 Score=25.74 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=29.3
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEE-eCCChHHHHHHH
Q 023109 90 VKALPGANRLIKHLSCHGVPMALA-SNSHRATIESKI 125 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~-T~~~~~~~~~~l 125 (287)
.|-.++..++++.++++|+.+.+- |+.+.+.+.+.+
T Consensus 173 APE~~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~ 209 (380)
T TIGR00221 173 APEEDQHFELIRHLKDAGIIVSAGHTNATYELAKAAF 209 (380)
T ss_pred CCCCCChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHH
Confidence 355688999999999999988876 888887777655
No 291
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=45.76 E-value=82 Score=32.10 Aligned_cols=50 Identities=8% Similarity=-0.055 Sum_probs=37.0
Q ss_pred cCCCCCCHHHHHHHHHHcCCCCCcE-EEEeCCHh-hHHHHHHcCCeEEEECC
Q 023109 144 VRTGKPSPDIFLEAAKRLNMEPSSS-LVIEDSVI-GVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 144 ~~~~kp~~~~~~~~~~~l~~~~~~~-l~iGDs~~-Dv~~a~~aG~~~i~v~~ 193 (287)
.+..-.+...++.+..+.|++.+++ +++|||-| |++....--.+++.+..
T Consensus 951 lP~~ASKgqAlRyL~~rwgi~l~~v~VfaGdSGntD~e~Ll~G~~~tvi~~g 1002 (1050)
T TIGR02468 951 IPLLASRSQALRYLFVRWGIELANMAVFVGESGDTDYEGLLGGLHKTVILKG 1002 (1050)
T ss_pred eeCCCCHHHHHHHHHHHcCCChHHeEEEeccCCCCCHHHHhCCceeEEEEec
Confidence 3456667889999999999999999 55999999 98876433334444443
No 292
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.96 E-value=1.5e+02 Score=26.54 Aligned_cols=47 Identities=26% Similarity=0.430 Sum_probs=34.5
Q ss_pred ccceeeccCCcCCCCCCHHHHHHHHHHcC-CCCCcEEEEeCCHhhHHHH
Q 023109 134 SFSVIVGSDEVRTGKPSPDIFLEAAKRLN-MEPSSSLVIEDSVIGVVAG 181 (287)
Q Consensus 134 ~fd~i~~~~~~~~~kp~~~~~~~~~~~l~-~~~~~~l~iGDs~~Dv~~a 181 (287)
.||.|+ .|..+..+...+.|++..+--+ +.|+++++|=|+.-.-.+.
T Consensus 183 ~fdvII-vDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae 230 (483)
T KOG0780|consen 183 NFDVII-VDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAE 230 (483)
T ss_pred CCcEEE-EeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHH
Confidence 366665 4666778888888888776654 7899999999988554443
No 293
>PF10490 CENP-F_C_Rb_bdg: Rb-binding domain of kinetochore protein Cenp-F/LEK1; InterPro: IPR018302 This entry represents the Rb protein-binding domain from the centromere protein Cenp-F. Cenp-F is a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, that is involved in chromosome segregation during mitosis and is essential for the full functioning of the mitotic checkpoint pathway [, ]. Cenp-F interacts with retinoblastoma protein (RB), CENP-E and BUBR1. This domain is at the very C terminus of the C-terminal coiled-coil region, and binds to the Rb family of tumour suppressors [].
Probab=44.94 E-value=13 Score=21.67 Aligned_cols=17 Identities=35% Similarity=0.712 Sum_probs=16.0
Q ss_pred chhHhHHHhhccCCCcc
Q 023109 255 CLQRVIQMSFQNIPRGS 271 (287)
Q Consensus 255 ~~~~~~~~~~~~~~~~~ 271 (287)
|||.+.|.=|-|+|+|.
T Consensus 16 GLPevV~kGFADIPtgk 32 (49)
T PF10490_consen 16 GLPEVVKKGFADIPTGK 32 (49)
T ss_pred CcHHHHHhccccCCCCC
Confidence 89999999999999995
No 294
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=44.54 E-value=41 Score=29.45 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=46.5
Q ss_pred HHHHC-CCCEE-EEeCCC--hHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHc-CCCCCcEEEEeCCHh
Q 023109 102 HLSCH-GVPMA-LASNSH--RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL-NMEPSSSLVIEDSVI 176 (287)
Q Consensus 102 ~l~~~-g~~v~-l~T~~~--~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l-~~~~~~~l~iGDs~~ 176 (287)
+|++. ++.+. ++|+.. ..+-.... +.+++ ...+..+..+.....+.-...+..+.+.+ ...|+-+++.||+..
T Consensus 2 ~l~~~~~~~~~li~tG~H~~~~~g~~~~-~~f~i-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~~~ 79 (346)
T PF02350_consen 2 ALQKDPGFELILIVTGQHLDPEMGDTFF-EGFGI-PKPDYLLDSDSQSMAKSTGLAIIELADVLEREKPDAVLVLGDRNE 79 (346)
T ss_dssp HHHCSTTEEEEEEEECSS--CHHHHHHH-HHTT---SEEEE--STTS-HHHHHHHHHHHHHHHHHHHT-SEEEEETTSHH
T ss_pred hhhhCCCCCEEEEEeCCCCCHHHHHHHH-hhCCC-CCCCcccccccchHHHHHHHHHHHHHHHHHhcCCCEEEEEcCCch
Confidence 34444 55554 457775 56666555 66666 55566555333111111112222222222 247899999999995
Q ss_pred ---hHHHHHHcCCeEEEECCC
Q 023109 177 ---GVVAGKAAGMEVVAVPSL 194 (287)
Q Consensus 177 ---Dv~~a~~aG~~~i~v~~~ 194 (287)
-..+|...+++++.+..|
T Consensus 80 ~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 80 ALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHHTT-EEEEES--
T ss_pred HHHHHHHHHHhCCCEEEecCC
Confidence 445677789999999886
No 295
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=44.51 E-value=14 Score=30.82 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=14.7
Q ss_pred CccEEEEecCCcccccH
Q 023109 8 LMSCVILDLDGTLLNTD 24 (287)
Q Consensus 8 ~~k~iifDlDGTL~d~~ 24 (287)
..|++++|+|.||+.+.
T Consensus 88 ~kk~lVLDLDeTLvHss 104 (262)
T KOG1605|consen 88 GRKTLVLDLDETLVHSS 104 (262)
T ss_pred CCceEEEeCCCcccccc
Confidence 45899999999999875
No 296
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=44.42 E-value=1.5e+02 Score=27.49 Aligned_cols=103 Identities=12% Similarity=0.143 Sum_probs=55.7
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHH-HHHHHHcC-----
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIF-LEAAKRLN----- 162 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~-~~~~~~l~----- 162 (287)
..++.|.+.+.++++...+-. +-.+.-+........ +.+++...-..++..+....+++..+-+ .++.+..+
T Consensus 127 ~Cp~Cp~~v~~~~~~a~~~~~-i~~~~id~~~~~~~~-~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 204 (517)
T PRK15317 127 SCHNCPDVVQALNLMAVLNPN-ITHTMIDGALFQDEV-EARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAE 204 (517)
T ss_pred CCCCcHHHHHHHHHHHHhCCC-ceEEEEEchhCHhHH-HhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchh
Confidence 467778888888777765321 112222333333344 4555543333333322233344444333 33332211
Q ss_pred ----CCCCcEEEEeCCHhhHHHHHH---cCCeEEEECC
Q 023109 163 ----MEPSSSLVIEDSVIGVVAGKA---AGMEVVAVPS 193 (287)
Q Consensus 163 ----~~~~~~l~iGDs~~Dv~~a~~---aG~~~i~v~~ 193 (287)
...-+++.||-++..+.+|.. .|.+++++..
T Consensus 205 ~~~~~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 205 ELNAKDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred hcccCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 223489999999999998765 4778877743
No 297
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=44.02 E-value=23 Score=23.31 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=15.9
Q ss_pred ccEEEEecCCcccccHHHHH
Q 023109 9 MSCVILDLDGTLLNTDGMFS 28 (287)
Q Consensus 9 ~k~iifDlDGTL~d~~~~~~ 28 (287)
.-.|+++-|||.++++..+.
T Consensus 38 ~~~l~L~eDGT~VddEeyF~ 57 (74)
T smart00266 38 PVTLVLEEDGTIVDDEEYFQ 57 (74)
T ss_pred CcEEEEecCCcEEccHHHHh
Confidence 35789999999999876553
No 298
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=43.68 E-value=89 Score=25.78 Aligned_cols=81 Identities=14% Similarity=0.226 Sum_probs=49.4
Q ss_pred CCCEEEEeCC---ChHHHHHHHHhhc-CCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCH--hhHHH
Q 023109 107 GVPMALASNS---HRATIESKISYQH-GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV--IGVVA 180 (287)
Q Consensus 107 g~~v~l~T~~---~~~~~~~~l~~~~-gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~--~Dv~~ 180 (287)
++.+-+++.+ ....++....+.+ .+. .|.++..+. ....|-|...++++...+++ |+.|||.+ .+-..
T Consensus 30 dI~vrv~gsGaKm~pe~~e~~~~~~~~~~~--pdf~I~isP-N~~~PGP~~ARE~l~~~~iP---~IvI~D~p~~k~kd~ 103 (276)
T PF01993_consen 30 DIDVRVVGSGAKMGPEDVEEVVTKMLKEWD--PDFVIVISP-NAAAPGPTKAREMLSAKGIP---CIVISDAPTKKAKDA 103 (276)
T ss_dssp SEEEEEEEEET--SHHHHHHHHHHHHHHH----SEEEEE-S--TTSHHHHHHHHHHHHSSS----EEEEEEGGGGGGHHH
T ss_pred CceEEEeccCCCCCHHHHHHHHHHHHHhhC--CCEEEEECC-CCCCCCcHHHHHHHHhCCCC---EEEEcCCCchhhHHH
Confidence 5677777655 3333333331221 232 244333222 23567788888998888887 99999999 36778
Q ss_pred HHHcCCeEEEECC
Q 023109 181 GKAAGMEVVAVPS 193 (287)
Q Consensus 181 a~~aG~~~i~v~~ 193 (287)
.++.|...+.+..
T Consensus 104 l~~~g~GYIivk~ 116 (276)
T PF01993_consen 104 LEEEGFGYIIVKA 116 (276)
T ss_dssp HHHTT-EEEEETT
T ss_pred HHhcCCcEEEEec
Confidence 8899999888876
No 299
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=42.67 E-value=43 Score=29.02 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=26.5
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChH
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRA 119 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~ 119 (287)
+.-++|.+.++++.+++.|+.+.+.||+...
T Consensus 140 EPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~ 170 (322)
T PRK13762 140 EPTLYPYLPELIEEFHKRGFTTFLVTNGTRP 170 (322)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEECCCCCH
Confidence 3445789999999999999999999999654
No 300
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=42.15 E-value=26 Score=23.45 Aligned_cols=19 Identities=26% Similarity=0.630 Sum_probs=15.7
Q ss_pred cEEEEecCCcccccHHHHH
Q 023109 10 SCVILDLDGTLLNTDGMFS 28 (287)
Q Consensus 10 k~iifDlDGTL~d~~~~~~ 28 (287)
-.|+++-|||.+|++..+.
T Consensus 40 ~~lvLeeDGT~Vd~EeyF~ 58 (81)
T cd06537 40 LTLVLEEDGTAVDSEDFFE 58 (81)
T ss_pred eEEEEecCCCEEccHHHHh
Confidence 5789999999999976553
No 301
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=42.06 E-value=26 Score=23.25 Aligned_cols=20 Identities=30% Similarity=0.715 Sum_probs=16.0
Q ss_pred ccEEEEecCCcccccHHHHH
Q 023109 9 MSCVILDLDGTLLNTDGMFS 28 (287)
Q Consensus 9 ~k~iifDlDGTL~d~~~~~~ 28 (287)
.-.++++-|||.+|++..+.
T Consensus 40 ~~~lvL~eDGT~Vd~EeyF~ 59 (78)
T cd06539 40 LVTLVLEEDGTVVDTEEFFQ 59 (78)
T ss_pred CcEEEEeCCCCEEccHHHHh
Confidence 45789999999999976553
No 302
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=40.61 E-value=26 Score=23.28 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=15.8
Q ss_pred ccEEEEecCCcccccHHHHH
Q 023109 9 MSCVILDLDGTLLNTDGMFS 28 (287)
Q Consensus 9 ~k~iifDlDGTL~d~~~~~~ 28 (287)
.-.|+++-|||.++++..+.
T Consensus 40 ~~~lvL~eDGTeVddEeYF~ 59 (78)
T cd01615 40 PVTLVLEEDGTEVDDEEYFQ 59 (78)
T ss_pred CeEEEEeCCCcEEccHHHHh
Confidence 34689999999999876553
No 303
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=40.31 E-value=42 Score=32.28 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=29.7
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHH
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l 125 (287)
-++.+++...|+.|+..|++++.+|+..-+.+.-+.
T Consensus 657 DkLQ~dVk~tLElLRNAgikiWMLTGDKlETA~ciA 692 (1051)
T KOG0210|consen 657 DKLQDDVKPTLELLRNAGIKIWMLTGDKLETAICIA 692 (1051)
T ss_pred HHHhhhhHhHHHHHhhcCcEEEEEcCcchhheeeee
Confidence 357788999999999999999999998777655443
No 304
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=40.20 E-value=2.2e+02 Score=23.75 Aligned_cols=94 Identities=16% Similarity=0.180 Sum_probs=53.5
Q ss_pred CCCcHHHHHHHHHHCCCCEE-EEeCCC-hHHHHHHHHhhcCCccccceeeccCCcCCCC--CCH---HHHHHHHHHcCCC
Q 023109 92 ALPGANRLIKHLSCHGVPMA-LASNSH-RATIESKISYQHGWNESFSVIVGSDEVRTGK--PSP---DIFLEAAKRLNME 164 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~-l~T~~~-~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~k--p~~---~~~~~~~~~l~~~ 164 (287)
+.+...++++.+++.|...+ +++..+ .+.+.... +.. +.|-.+++.....-.+ -.+ +.++++.+..+.
T Consensus 125 p~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~-~~~---~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~- 199 (256)
T TIGR00262 125 PLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIA-EKS---QGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAK- 199 (256)
T ss_pred ChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHH-HhC---CCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCC-
Confidence 34678889999999998866 555444 34455555 332 2244444433222111 112 223333332222
Q ss_pred CCcEEEEeCC---HhhHHHHHHcCCeEEEECC
Q 023109 165 PSSSLVIEDS---VIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 165 ~~~~l~iGDs---~~Dv~~a~~aG~~~i~v~~ 193 (287)
-+++|=+ +.++..+..+|...+++.+
T Consensus 200 ---pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 200 ---PVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred ---CEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 3666654 4699999999999888877
No 305
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=39.96 E-value=1e+02 Score=26.74 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=55.1
Q ss_pred cCCCCCcHHHHHHHHHHC----CCCEEEEeCCChHHH---HHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHc
Q 023109 89 KVKALPGANRLIKHLSCH----GVPMALASNSHRATI---ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL 161 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~----g~~v~l~T~~~~~~~---~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l 161 (287)
.-.+.+++.+.++.|.+. .++.+++||+-.... .+.+.+.+|+.-.-|.++-+ - ..|+... +
T Consensus 49 G~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviqS-----H----sP~r~l~-~- 117 (389)
T KOG1618|consen 49 GHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQS-----H----SPFRLLV-E- 117 (389)
T ss_pred cCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHhh-----c----ChHHHHh-h-
Confidence 457889999999999987 799999999843222 22343445543222222211 1 1223333 1
Q ss_pred CCCCCcEEEEeCCHhhHHHHHHcCCeEEE
Q 023109 162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVA 190 (287)
Q Consensus 162 ~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~ 190 (287)
..-++++++|+.. -.+.|+..|.+.+.
T Consensus 118 -~~~k~vLv~G~~~-vr~vAegyGFk~Vv 144 (389)
T KOG1618|consen 118 -YHYKRVLVVGQGS-VREVAEGYGFKNVV 144 (389)
T ss_pred -hhhceEEEecCCc-HHHHhhccCcccee
Confidence 3456899999654 45678888887765
No 306
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=39.72 E-value=90 Score=24.79 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=49.3
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHH-HHHHHHhhcCCccccceeeccCCcC-----------CCCCCHHHHHH
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT-IESKISYQHGWNESFSVIVGSDEVR-----------TGKPSPDIFLE 156 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~-~~~~l~~~~gl~~~fd~i~~~~~~~-----------~~kp~~~~~~~ 156 (287)
...+-.|+..+|+.|+..++.+...++-.... ....+ + ++ +..|.|+.||... ..|+.|..++.
T Consensus 27 s~~y~~GAd~Ll~~Lr~g~~dv~yMpAH~~q~~FPqtm-e--~L-~~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~l 102 (254)
T COG5426 27 SVTYHEGADPLLKALRGGEYDVTYMPAHDAQEKFPQTM-E--GL-DAYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKL 102 (254)
T ss_pred ceecccCchHHHHHHhCCCcceEEechHHHHHhcchhh-h--hh-cccceEEEeecCCceeeccccceeecccCccHHHH
Confidence 45677899999999999999888776542211 11122 1 22 2368887776322 45666666555
Q ss_pred HHHHcCCCCCcEEEEeC
Q 023109 157 AAKRLNMEPSSSLVIED 173 (287)
Q Consensus 157 ~~~~l~~~~~~~l~iGD 173 (287)
+.+..+ .....+|||-
T Consensus 103 ikdyV~-~GGGLLMiGG 118 (254)
T COG5426 103 IKDYVE-NGGGLLMIGG 118 (254)
T ss_pred HHHHHh-cCCcEEEEcc
Confidence 444433 5567888874
No 307
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=39.64 E-value=2.2e+02 Score=23.54 Aligned_cols=94 Identities=13% Similarity=0.157 Sum_probs=64.5
Q ss_pred CCCCcHHHHHHH---HHHCCCCEEEEeCCChHHHHHHHHhhcCCccc--cceeeccCCcCCCCCCHHHHHHHHHHcCCCC
Q 023109 91 KALPGANRLIKH---LSCHGVPMALASNSHRATIESKISYQHGWNES--FSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (287)
Q Consensus 91 ~~~~g~~~~l~~---l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~--fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~ 165 (287)
.+.|+..++++. |-+.|+.+.-.|+.+.-.+++.. + .|.... .-.-+++ +.+--.+..++.++++..++
T Consensus 111 tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLe-e-~GcaavMPl~aPIGS---g~G~~n~~~l~iiie~a~VP- 184 (262)
T COG2022 111 TLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLE-E-AGCAAVMPLGAPIGS---GLGLQNPYNLEIIIEEADVP- 184 (262)
T ss_pred ccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHH-h-cCceEeccccccccC---CcCcCCHHHHHHHHHhCCCC-
Confidence 467888777754 55789999999998888776444 3 343211 1222332 23444678888888888776
Q ss_pred CcEEEEeCC---HhhHHHHHHcCCeEEEECC
Q 023109 166 SSSLVIEDS---VIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 166 ~~~l~iGDs---~~Dv~~a~~aG~~~i~v~~ 193 (287)
+.|+-+ ++|...+-+.|+..+++|+
T Consensus 185 ---viVDAGiG~pSdAa~aMElG~DaVL~NT 212 (262)
T COG2022 185 ---VIVDAGIGTPSDAAQAMELGADAVLLNT 212 (262)
T ss_pred ---EEEeCCCCChhHHHHHHhcccceeehhh
Confidence 455443 4899999999999999998
No 308
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=39.57 E-value=29 Score=23.17 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=15.5
Q ss_pred cEEEEecCCcccccHHHHH
Q 023109 10 SCVILDLDGTLLNTDGMFS 28 (287)
Q Consensus 10 k~iifDlDGTL~d~~~~~~ 28 (287)
-.|+++-|||.++++..+.
T Consensus 43 ~~lvL~eDGT~VddEeyF~ 61 (80)
T cd06536 43 ITLVLAEDGTIVEDEDYFL 61 (80)
T ss_pred eEEEEecCCcEEccHHHHh
Confidence 4688999999999876553
No 309
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=39.46 E-value=2.1e+02 Score=23.21 Aligned_cols=76 Identities=16% Similarity=0.079 Sum_probs=47.9
Q ss_pred CCCEEEEeCCChHHH--HHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEE---eCCHhhHHHH
Q 023109 107 GVPMALASNSHRATI--ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI---EDSVIGVVAG 181 (287)
Q Consensus 107 g~~v~l~T~~~~~~~--~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~i---GDs~~Dv~~a 181 (287)
|.++++++.+++.+. ...+... +..++ -.--|.+..++.++.++|.+-+++-++ |...+++...
T Consensus 68 g~~v~VLasGDP~f~G~g~~l~~~----------~~~~~-v~iIPgiSS~q~a~ARlg~~~~~~~~islHgr~~~~l~~~ 136 (210)
T COG2241 68 GRDVVVLASGDPLFSGVGRLLRRK----------FSCEE-VEIIPGISSVQLAAARLGWPLQDTEVISLHGRPVELLRPL 136 (210)
T ss_pred CCCeEEEecCCcchhhhHHHHHHh----------cCccc-eEEecChhHHHHHHHHhCCChHHeEEEEecCCCHHHHHHH
Confidence 788888887776542 2222111 11122 124567788999999999998866666 4445777777
Q ss_pred HHcCCeEEEECC
Q 023109 182 KAAGMEVVAVPS 193 (287)
Q Consensus 182 ~~aG~~~i~v~~ 193 (287)
..-|...++...
T Consensus 137 ~~~~~~~vil~~ 148 (210)
T COG2241 137 LENGRRLVILTP 148 (210)
T ss_pred HhCCceEEEeCC
Confidence 766666666555
No 310
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=39.39 E-value=40 Score=24.18 Aligned_cols=33 Identities=9% Similarity=0.045 Sum_probs=26.7
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHH
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIE 122 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~ 122 (287)
....+++.+.++.++++|.+++.+|+.+.....
T Consensus 56 sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la 88 (126)
T cd05008 56 SGETADTLAALRLAKEKGAKTVAITNVVGSTLA 88 (126)
T ss_pred CcCCHHHHHHHHHHHHcCCeEEEEECCCCChHH
Confidence 345578999999999999999999998665443
No 311
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=39.08 E-value=24 Score=22.24 Aligned_cols=24 Identities=8% Similarity=0.182 Sum_probs=14.0
Q ss_pred HHHHHHcCCCCCcEEEEeCCHhhHHHHH
Q 023109 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGK 182 (287)
Q Consensus 155 ~~~~~~l~~~~~~~l~iGDs~~Dv~~a~ 182 (287)
...++.+|+ ++|+||...|+++..
T Consensus 8 qQLLK~fG~----~IY~gdr~~DielM~ 31 (62)
T PF06014_consen 8 QQLLKKFGI----IIYVGDRLWDIELME 31 (62)
T ss_dssp HHHHHTTS---------S-HHHHHHHHH
T ss_pred HHHHHHCCE----EEEeCChHHHHHHHH
Confidence 566777775 599999999998754
No 312
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=37.38 E-value=38 Score=24.36 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=27.3
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHH
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIE 122 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~ 122 (287)
....+.+.+.++.++++|.+++.+|+.......
T Consensus 57 sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (128)
T cd05014 57 SGETDELLNLLPHLKRRGAPIIAITGNPNSTLA 89 (128)
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchh
Confidence 345688999999999999999999998766544
No 313
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=37.16 E-value=66 Score=26.15 Aligned_cols=95 Identities=15% Similarity=0.086 Sum_probs=60.5
Q ss_pred CCCCCcHH-HHHHHHHHCCCCEEEEeCCChH-----HHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCC
Q 023109 90 VKALPGAN-RLIKHLSCHGVPMALASNSHRA-----TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (287)
Q Consensus 90 ~~~~~g~~-~~l~~l~~~g~~v~l~T~~~~~-----~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~ 163 (287)
..+.|++. ++.+.+++.|.+.+|+...+.. .++..+ +.+|+.-.|...+|+-+- .+. ..+.+.++.+|-
T Consensus 58 y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~-e~~gi~~~~P~~~CsL~~-~~~---p~i~~F~~~fGk 132 (217)
T PF02593_consen 58 YGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQL-EEFGIEVEFPKPFCSLEE-NGN---PQIDEFAEYFGK 132 (217)
T ss_pred eccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHH-HhcCceeecCccccccCC-CCC---hhHHHHHHHhCC
Confidence 35667766 6667788899999999877666 777788 777877667777665332 223 345666667884
Q ss_pred CCCcEEEEeCCH-hhHHHHHHcCCeEEE
Q 023109 164 EPSSSLVIEDSV-IGVVAGKAAGMEVVA 190 (287)
Q Consensus 164 ~~~~~l~iGDs~-~Dv~~a~~aG~~~i~ 190 (287)
+-=++ .+.|+. .|+...|.+-|.+.+
T Consensus 133 P~~ei-~v~~~~I~~V~VlR~aPCGsT~ 159 (217)
T PF02593_consen 133 PKVEI-EVENGKIKDVKVLRSAPCGSTW 159 (217)
T ss_pred ceEEE-EecCCcEEEEEEEecCCCccHH
Confidence 43233 344443 677666666554433
No 314
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=37.09 E-value=76 Score=20.59 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=23.8
Q ss_pred cEEEEecCCcccccHHHHHHHHHHHHHHcC
Q 023109 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYG 39 (287)
Q Consensus 10 k~iifDlDGTL~d~~~~~~~~~~~~~~~~g 39 (287)
+-|.+|++|+-.-+......++..++.+++
T Consensus 18 ~~V~lDF~gv~~~~ssFl~eafg~l~~~~~ 47 (74)
T PF14213_consen 18 EKVVLDFEGVESITSSFLNEAFGQLVREFG 47 (74)
T ss_pred CeEEEECCCcccccHHHHHHHHHHHHHHcC
Confidence 349999999977777778888877777766
No 315
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=36.38 E-value=35 Score=22.73 Aligned_cols=19 Identities=42% Similarity=0.697 Sum_probs=15.5
Q ss_pred cEEEEecCCcccccHHHHH
Q 023109 10 SCVILDLDGTLLNTDGMFS 28 (287)
Q Consensus 10 k~iifDlDGTL~d~~~~~~ 28 (287)
-.|+++-|||.++++..+.
T Consensus 40 ~~lvL~eDGT~Vd~EeyF~ 58 (79)
T cd06538 40 SSLVLDEDGTGVDTEEFFQ 58 (79)
T ss_pred cEEEEecCCcEEccHHHHh
Confidence 4689999999999876553
No 316
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=36.35 E-value=1.4e+02 Score=25.47 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=23.4
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCCChHH
Q 023109 93 LPGANRLIKHLSCHGVPMALASNSHRAT 120 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~~~~~ 120 (287)
.+|+..+-+.|++.|.+++++|+.....
T Consensus 62 P~GA~aLa~aL~~lG~~~~ivtd~~~~~ 89 (291)
T PF14336_consen 62 PPGAAALARALQALGKEVVIVTDERCAP 89 (291)
T ss_pred hHHHHHHHHHHHHcCCeEEEEECHHHHH
Confidence 5789999999999999999999875433
No 317
>PLN02334 ribulose-phosphate 3-epimerase
Probab=35.62 E-value=2.4e+02 Score=22.88 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCC--ChHHHHHHHHhhcCCccccceeecc--C-CcCCCCCCHHHHHHHHHHcCCCC-C
Q 023109 93 LPGANRLIKHLSCHGVPMALASNS--HRATIESKISYQHGWNESFSVIVGS--D-EVRTGKPSPDIFLEAAKRLNMEP-S 166 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~--~~~~~~~~l~~~~gl~~~fd~i~~~--~-~~~~~kp~~~~~~~~~~~l~~~~-~ 166 (287)
.+...+.++.+++.|..+++.++. +....+..+ ...|. |.+... . .....+..+..+.++.+.....+ -
T Consensus 101 ~d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~-~~~~~----Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~ 175 (229)
T PLN02334 101 TIHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVV-EKGLV----DMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPEL 175 (229)
T ss_pred chhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHH-hccCC----CEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCC
Confidence 345678899999999999998873 344444333 22012 322111 1 01112223344444433222212 2
Q ss_pred cEEEE-eCCHhhHHHHHHcCCeEEEECC
Q 023109 167 SSLVI-EDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 167 ~~l~i-GDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
.+.++ |=+..++....++|...+.+.+
T Consensus 176 ~I~a~GGI~~e~i~~l~~aGad~vvvgs 203 (229)
T PLN02334 176 DIEVDGGVGPSTIDKAAEAGANVIVAGS 203 (229)
T ss_pred cEEEeCCCCHHHHHHHHHcCCCEEEECh
Confidence 45566 5666899999999999888877
No 318
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=34.41 E-value=3.6e+02 Score=24.48 Aligned_cols=106 Identities=13% Similarity=0.116 Sum_probs=54.1
Q ss_pred CCEEEEeCCChHHHHHHHHhhcCCc-cccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEE---eCCHhhH-----
Q 023109 108 VPMALASNSHRATIESKISYQHGWN-ESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI---EDSVIGV----- 178 (287)
Q Consensus 108 ~~v~l~T~~~~~~~~~~l~~~~gl~-~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~i---GDs~~Dv----- 178 (287)
.+|+++|..+.....-++ ....-. ..+...+. .....+...+.-+.++++.++-..-+++.| |-|..|+
T Consensus 136 ~~I~viTs~~gAa~~D~~-~~~~~r~p~~~~~~~-~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~ 213 (438)
T PRK00286 136 KRIGVITSPTGAAIRDIL-TVLRRRFPLVEVIIY-PTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFND 213 (438)
T ss_pred CEEEEEeCCccHHHHHHH-HHHHhcCCCCeEEEe-cCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCc
Confidence 478999988777666555 332211 11333332 223345555666677777766433467777 3444555
Q ss_pred -HHHHH---cCCeEEEECCCCCcccc--ccCCcEEeCCccCcCc
Q 023109 179 -VAGKA---AGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRP 216 (287)
Q Consensus 179 -~~a~~---aG~~~i~v~~~~~~~~~--~~~a~~v~~~l~el~~ 216 (287)
..+++ +.++++..- |+..+.. ...||...+++....+
T Consensus 214 e~v~~ai~~~~~Pvis~I-GHE~D~tl~D~vAd~ra~TPtaaae 256 (438)
T PRK00286 214 EAVARAIAASRIPVISAV-GHETDFTIADFVADLRAPTPTAAAE 256 (438)
T ss_pred HHHHHHHHcCCCCEEEec-cCCCCccHHHHhhhccCCChHHHHH
Confidence 33333 344433322 3332222 4455666666665544
No 319
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=34.20 E-value=1.8e+02 Score=22.26 Aligned_cols=45 Identities=11% Similarity=0.234 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCc-cccceeeccC
Q 023109 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ESFSVIVGSD 142 (287)
Q Consensus 95 g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~-~~fd~i~~~~ 142 (287)
...++|+.++++|.++++..++..... .+ .++|+. +.++.++-.+
T Consensus 56 ~l~~~L~~~~~~gk~I~~yGA~~kg~t--ll-n~~g~~~~~I~~vvD~n 101 (160)
T PF08484_consen 56 ELREFLEKLKAEGKRIAGYGAGAKGNT--LL-NYFGLDNDLIDYVVDDN 101 (160)
T ss_dssp HHHHHHHHHHHTT--EEEE---SHHHH--HH-HHHT--TTTS--EEES-
T ss_pred HHHHHHHHHHHcCCEEEEECcchHHHH--HH-HHhCCCcceeEEEEeCC
Confidence 567899999999999999988876653 44 777874 4577776543
No 320
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=34.10 E-value=3.9e+02 Score=24.83 Aligned_cols=102 Identities=15% Similarity=0.247 Sum_probs=56.9
Q ss_pred cCCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHc-------
Q 023109 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL------- 161 (287)
Q Consensus 89 ~~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l------- 161 (287)
..|+.|.+.+.++++....-.+. ++.-+........ +.++....-..++..+....+++..+.+...+...
T Consensus 128 ~Cp~Cp~~v~~~~~~a~~~p~i~-~~~id~~~~~~~~-~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 205 (515)
T TIGR03140 128 TCQNCPDVVQALNQMALLNPNIS-HTMIDGALFQDEV-EALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAAS 205 (515)
T ss_pred CCCCCHHHHHHHHHHHHhCCCce-EEEEEchhCHHHH-HhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccch
Confidence 46777888888888776532221 2222333333344 55555533333333333344445444443333321
Q ss_pred ---CCCCCcEEEEeCCHhhHHHHHH---cCCeEEEEC
Q 023109 162 ---NMEPSSSLVIEDSVIGVVAGKA---AGMEVVAVP 192 (287)
Q Consensus 162 ---~~~~~~~l~iGDs~~Dv~~a~~---aG~~~i~v~ 192 (287)
..++-+++.||-++..+.+|.. .|.++.++.
T Consensus 206 ~~~~~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~ 242 (515)
T TIGR03140 206 ALEQLDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVA 242 (515)
T ss_pred hccccCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 2344589999999999988765 477887774
No 321
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=33.61 E-value=1.1e+02 Score=27.30 Aligned_cols=84 Identities=11% Similarity=0.098 Sum_probs=55.4
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEE
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l 169 (287)
+.-+|++..++..+.+- +++++.|.....+++.++ ..++-...|...+....+. -+.+. |-+-+...+.+-+.++
T Consensus 251 v~kRp~l~~fl~~ls~~-~~l~~ft~s~~~y~~~v~-d~l~~~k~~~~~lfr~sc~--~~~G~-~ikDis~i~r~l~~vi 325 (390)
T COG5190 251 VSKRPELDYFLGKLSKI-HELVYFTASVKRYADPVL-DILDSDKVFSHRLFRESCV--SYLGV-YIKDISKIGRSLDKVI 325 (390)
T ss_pred EcCChHHHHHHhhhhhh-EEEEEEecchhhhcchHH-Hhccccceeehhhhcccce--eccCc-hhhhHHhhccCCCceE
Confidence 35578899999888777 899999999888888766 6555433333322222222 22223 4445666677888999
Q ss_pred EEeCCHhhH
Q 023109 170 VIEDSVIGV 178 (287)
Q Consensus 170 ~iGDs~~Dv 178 (287)
+|.++++-.
T Consensus 326 iId~~p~SY 334 (390)
T COG5190 326 IIDNSPASY 334 (390)
T ss_pred EeeCChhhh
Confidence 999998533
No 322
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=33.52 E-value=1.4e+02 Score=26.11 Aligned_cols=92 Identities=12% Similarity=0.100 Sum_probs=50.7
Q ss_pred HHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCH-HHHH---HHHHHc-CCCCCcEEE
Q 023109 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSP-DIFL---EAAKRL-NMEPSSSLV 170 (287)
Q Consensus 96 ~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~-~~~~---~~~~~l-~~~~~~~l~ 170 (287)
...++++|+++|+.+.+.+-. ...+...+ +.+|+ +.+..+........+. .... ++.+.. ...|+ ++.
T Consensus 16 Fk~~I~eL~~~GheV~it~R~-~~~~~~LL-~~yg~----~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pD-v~i 88 (335)
T PF04007_consen 16 FKNIIRELEKRGHEVLITARD-KDETEELL-DLYGI----DYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPD-VAI 88 (335)
T ss_pred HHHHHHHHHhCCCEEEEEEec-cchHHHHH-HHcCC----CeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC-EEE
Confidence 456889999999887776654 44555677 77776 4443322111111110 0011 111111 23444 333
Q ss_pred EeCCHhhHHHHHHcCCeEEEECCC
Q 023109 171 IEDSVIGVVAGKAAGMEVVAVPSL 194 (287)
Q Consensus 171 iGDs~~Dv~~a~~aG~~~i~v~~~ 194 (287)
-..|+.-...|...|++++.+...
T Consensus 89 s~~s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 89 SFGSPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred ecCcHHHHHHHHHhCCCeEEEecC
Confidence 445556666999999999998874
No 323
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=33.44 E-value=41 Score=27.88 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCCC--cEEEEeCCH-hhHHHHHHcCCeEEEECC
Q 023109 152 DIFLEAAKRLNMEPS--SSLVIEDSV-IGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 152 ~~~~~~~~~l~~~~~--~~l~iGDs~-~Dv~~a~~aG~~~i~v~~ 193 (287)
+.|..-++.+|++|. ++-+|.|+- +-.-+|...|+.+-.-..
T Consensus 93 elYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVWldGM 137 (283)
T PRK09348 93 ELYLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWEVWLDGM 137 (283)
T ss_pred HHHHHHHHHhCCCccccceeEeecCCCCCcccccccceEEEECCe
Confidence 678888999999985 999999998 788888888876654333
No 324
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=33.18 E-value=42 Score=27.77 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCCC--cEEEEeCCH-hhHHHHHHcCCeEEEECC
Q 023109 151 PDIFLEAAKRLNMEPS--SSLVIEDSV-IGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 151 ~~~~~~~~~~l~~~~~--~~l~iGDs~-~Dv~~a~~aG~~~i~v~~ 193 (287)
.+.|..-++.+|++|. ++-+|.|+- +-.-+|...|+.+-.-..
T Consensus 88 QelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWEVWldGM 133 (279)
T cd00733 88 QELYLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWEVWLDGM 133 (279)
T ss_pred HHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEECCe
Confidence 3678888999999984 999999998 788888888876654433
No 325
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=33.01 E-value=57 Score=23.42 Aligned_cols=33 Identities=6% Similarity=0.009 Sum_probs=26.9
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHH
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIE 122 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~ 122 (287)
..-.+++.+.++.++++|.+++.+|+.......
T Consensus 57 SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (120)
T cd05710 57 SGNTKETVAAAKFAKEKGATVIGLTDDEDSPLA 89 (120)
T ss_pred CCCChHHHHHHHHHHHcCCeEEEEECCCCCcHH
Confidence 345678999999999999999999988665543
No 326
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=32.95 E-value=47 Score=27.35 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHHHHCCCCEEEEeCCChHH
Q 023109 92 ALPGANRLIKHLSCHGVPMALASNSHRAT 120 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~l~T~~~~~~ 120 (287)
+.++..++++.+++.|+++.+-||+....
T Consensus 85 l~~~l~~li~~l~~~g~~v~leTNGtl~~ 113 (238)
T TIGR03365 85 LQKPLGELIDLGKAKGYRFALETQGSVWQ 113 (238)
T ss_pred hhHhHHHHHHHHHHCCCCEEEECCCCCcH
Confidence 45789999999999999999999997643
No 327
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=32.78 E-value=3.1e+02 Score=23.32 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=53.5
Q ss_pred HHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcC-CCCCC---HHHHHHHHHHcCCCCCcEEEE
Q 023109 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR-TGKPS---PDIFLEAAKRLNMEPSSSLVI 171 (287)
Q Consensus 96 ~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~-~~kp~---~~~~~~~~~~l~~~~~~~l~i 171 (287)
..++|+..++.|+-+.-+.-.+...++.+++....... ..++...... ...+. ......+++...++- +++.
T Consensus 4 ~k~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~s--PvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPV--alHL 79 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPAFNIHNLETIQAVVETAAEMRS--PVILAGTPGTFKHAGTEYIVALCSAASTTYNMPL--ALHL 79 (282)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCC--CEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCE--EEEC
Confidence 46778888888888888877777777777632221111 2222211111 11111 123334445555542 2333
Q ss_pred --eCCHhhHHHHHHcCCeEEEECCCC
Q 023109 172 --EDSVIGVVAGKAAGMEVVAVPSLP 195 (287)
Q Consensus 172 --GDs~~Dv~~a~~aG~~~i~v~~~~ 195 (287)
|.+..++..|-.+|+.++|+..+.
T Consensus 80 DHg~~~e~i~~ai~~GFtSVM~DgS~ 105 (282)
T TIGR01858 80 DHHESLDDIRQKVHAGVRSAMIDGSH 105 (282)
T ss_pred CCCCCHHHHHHHHHcCCCEEeecCCC
Confidence 445678888888899999988753
No 328
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=31.55 E-value=3.3e+02 Score=24.73 Aligned_cols=71 Identities=11% Similarity=0.154 Sum_probs=39.1
Q ss_pred CCEEEEeCCChHHHHHHHHhhcCCc-cccceeeccCCcCCCCCCHHHHHHHHHHcCCCCC-cEEEE---eCCHhhHHH
Q 023109 108 VPMALASNSHRATIESKISYQHGWN-ESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS-SSLVI---EDSVIGVVA 180 (287)
Q Consensus 108 ~~v~l~T~~~~~~~~~~l~~~~gl~-~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~-~~l~i---GDs~~Dv~~ 180 (287)
.+|+++|..+......++ ....-. ..+..++. .....+...+.-+..+++.++..++ +++.| |-|..|+-.
T Consensus 130 ~~i~vits~~~aa~~D~~-~~~~~r~p~~~~~~~-~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~ 205 (432)
T TIGR00237 130 KRVGVITSQTGAALADIL-HILKRRDPSLKVVIY-PTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWS 205 (432)
T ss_pred CEEEEEeCCccHHHHHHH-HHHHhhCCCceEEEe-cccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhh
Confidence 468999988877666555 333322 12333332 2233455555666677776665442 77777 344455443
No 329
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=31.41 E-value=3e+02 Score=22.66 Aligned_cols=95 Identities=12% Similarity=0.054 Sum_probs=52.6
Q ss_pred CcHHHHHHHHHHCCCCEEEEeCC--ChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 023109 94 PGANRLIKHLSCHGVPMALASNS--HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI 171 (287)
Q Consensus 94 ~g~~~~l~~l~~~g~~v~l~T~~--~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~i 171 (287)
+...++++.+++.|.+.+++-+. +.+.++..+ +... .|=. .+.......+=.+....++.+.-...++..+.+
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~-~~~~---~~l~-msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v 190 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLS-KLSP---LFIY-YGLRPATGVPLPVSVERNIKRVRNLVGNKYLVV 190 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH-HhCC---CEEE-EEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEE
Confidence 57788999999999998887555 344455555 3321 1111 122211111111222222222222223334777
Q ss_pred eCCH---hhHHHHHHcCCeEEEECC
Q 023109 172 EDSV---IGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 172 GDs~---~Dv~~a~~aG~~~i~v~~ 193 (287)
|=+. .++..+..+|...+++.+
T Consensus 191 ~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 191 GFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred eCCcCCHHHHHHHHHcCCCEEEECH
Confidence 7655 688888899998888877
No 330
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=31.12 E-value=1.9e+02 Score=21.40 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHcCCCCC-cEEEEeCC----H---hhHHHHHHcCCeEEEE
Q 023109 146 TGKPSPDIFLEAAKRLNMEPS-SSLVIEDS----V---IGVVAGKAAGMEVVAV 191 (287)
Q Consensus 146 ~~kp~~~~~~~~~~~l~~~~~-~~l~iGDs----~---~Dv~~a~~aG~~~i~v 191 (287)
...|.++.+.+.+..+|++++ .+|+.+++ . .-.-+++.+|..-+.+
T Consensus 75 ~~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~i 128 (138)
T cd01445 75 SMEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAI 128 (138)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEE
Confidence 345667789999999999887 66666654 1 1223456678765444
No 331
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=31.07 E-value=2.2e+02 Score=20.96 Aligned_cols=13 Identities=8% Similarity=0.130 Sum_probs=10.6
Q ss_pred CccEEEEecCCcc
Q 023109 8 LMSCVILDLDGTL 20 (287)
Q Consensus 8 ~~k~iifDlDGTL 20 (287)
....+.||+.+||
T Consensus 44 ~P~iV~FDmK~Tl 56 (128)
T PRK13717 44 APVTAAFNMKQTV 56 (128)
T ss_pred CCeEEEEehHHHH
Confidence 4567899999988
No 332
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=30.91 E-value=2.5e+02 Score=25.21 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=30.0
Q ss_pred HHcCCCCCcEEEEeCCH--hhHHHHHHcCCeEEEECC
Q 023109 159 KRLNMEPSSSLVIEDSV--IGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 159 ~~l~~~~~~~l~iGDs~--~Dv~~a~~aG~~~i~v~~ 193 (287)
...|.+|+++++-|... .++..|.+.|+.++.+++
T Consensus 90 l~aG~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vdS 126 (394)
T COG0019 90 LAAGFPPERIVFSGPAKSEEEIAFALELGIKLINVDS 126 (394)
T ss_pred HHcCCChhhEEECCCCCCHHHHHHHHHcCCcEEEeCC
Confidence 33499999999999887 699999999999888887
No 333
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=30.90 E-value=49 Score=27.59 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCCCC--cEEEEeCCH-hhHHHHHHcCCeEEEEC
Q 023109 152 DIFLEAAKRLNMEPS--SSLVIEDSV-IGVVAGKAAGMEVVAVP 192 (287)
Q Consensus 152 ~~~~~~~~~l~~~~~--~~l~iGDs~-~Dv~~a~~aG~~~i~v~ 192 (287)
+.|..-++.+|++|. ++-+|.|+- +-.-+|...|+.+-.-.
T Consensus 90 elYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVWldG 133 (293)
T TIGR00388 90 ELYLDSLRALGIDPTEHDIRFVEDNWENPTLGAWGLGWEVWLDG 133 (293)
T ss_pred HHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEECC
Confidence 678888999999985 999999998 78888888887655433
No 334
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=30.89 E-value=3.1e+02 Score=22.80 Aligned_cols=49 Identities=22% Similarity=0.121 Sum_probs=34.5
Q ss_pred cEEEEeCCHhh---HHHHHHcCCeEEEECCCCCccccccCCcEEeCCccCcCccc
Q 023109 167 SSLVIEDSVIG---VVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218 (287)
Q Consensus 167 ~~l~iGDs~~D---v~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~~~ 218 (287)
++++|-|-..| +.-|+..|++++.+...... ...-|+++|...+..+++
T Consensus 158 d~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~d---pd~VD~~IP~Ndda~rsi 209 (252)
T COG0052 158 DVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCD---PDGVDYVIPGNDDAIRSI 209 (252)
T ss_pred CEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCC---CccCceeecCCChHHHHH
Confidence 67888887755 44577789999888763332 245689999888876543
No 335
>PRK08304 stage V sporulation protein AD; Validated
Probab=30.67 E-value=1.5e+02 Score=25.96 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=43.3
Q ss_pred hhcCCccccceeeccCCcCCC---CCC----HHHHHHHHHHcCCCCC--cEEEEeCCHhhH----HHHHHcCCeEEEECC
Q 023109 127 YQHGWNESFSVIVGSDEVRTG---KPS----PDIFLEAAKRLNMEPS--SSLVIEDSVIGV----VAGKAAGMEVVAVPS 193 (287)
Q Consensus 127 ~~~gl~~~fd~i~~~~~~~~~---kp~----~~~~~~~~~~l~~~~~--~~l~iGDs~~Dv----~~a~~aG~~~i~v~~ 193 (287)
....|.++||.++.-+-.+.. |.. .+..+++++..|++++ +.+++||..+-. ..++..|+++.-+..
T Consensus 30 ~~gpl~~~fd~~~~d~~~Ge~swEkAeseLa~eAa~~ALekAGI~~~DID~lI~Gdll~Q~~sAs~vA~~LGIPa~dV~g 109 (337)
T PRK08304 30 GEGPLGKYFDKILDDDYCGEKSWEKAERKMMEDAIQQALQKANLKKSDIDYLLAGDLLNQIISANFAARELGIPFLGLYG 109 (337)
T ss_pred cCCCChhhCCeEecccccCCcCccccHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCcchHHHHHHHhCCcEEEEec
Confidence 334577889998754444322 222 2446667778899887 788889875322 356778887766665
No 336
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=30.50 E-value=2.6e+02 Score=21.75 Aligned_cols=99 Identities=18% Similarity=0.203 Sum_probs=60.3
Q ss_pred cHHHHHHHHHHCCCCEEEEeCC-ChHHHHHHHH---hhcCCc-cccceee-ccC-----CcCCCCCCHHHHHHHHHHcCC
Q 023109 95 GANRLIKHLSCHGVPMALASNS-HRATIESKIS---YQHGWN-ESFSVIV-GSD-----EVRTGKPSPDIFLEAAKRLNM 163 (287)
Q Consensus 95 g~~~~l~~l~~~g~~v~l~T~~-~~~~~~~~l~---~~~gl~-~~fd~i~-~~~-----~~~~~kp~~~~~~~~~~~l~~ 163 (287)
.+.+.+-+.-..|-++.++-|+ +...+..... .++... ..+..+- +.| .+.+.-+.-..|.+-.+.+|.
T Consensus 29 ~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g~ 108 (176)
T COG0279 29 RAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALGQ 108 (176)
T ss_pred HHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcCC
Confidence 4445555555667788888665 4333433332 222221 1222322 212 234555666889999999998
Q ss_pred CCCcEEEE---eCCHh---hHHHHHHcCCeEEEECC
Q 023109 164 EPSSSLVI---EDSVI---GVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 164 ~~~~~l~i---GDs~~---Dv~~a~~aG~~~i~v~~ 193 (287)
+.+=.+.| |+|.| -++.|+..||.++....
T Consensus 109 ~GDvLigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG 144 (176)
T COG0279 109 PGDVLIGISTSGNSKNVLKAIEAAKEKGMTVIALTG 144 (176)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHcCCEEEEEec
Confidence 88766666 77775 55667888999998876
No 337
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=30.24 E-value=68 Score=22.94 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=26.5
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHH
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIE 122 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~ 122 (287)
.....+..+.++.++++|.+++++|+.....+.
T Consensus 63 sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~ 95 (131)
T PF01380_consen 63 SGETRELIELLRFAKERGAPVILITSNSESPLA 95 (131)
T ss_dssp SSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHH
T ss_pred cccchhhhhhhHHHHhcCCeEEEEeCCCCCchh
Confidence 345677889999999999999999987666544
No 338
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=29.08 E-value=2.5e+02 Score=23.42 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=26.2
Q ss_pred HhhHHHHHHcCCeEEEECCCCCccccccCCcEEeCCccCcCccc
Q 023109 175 VIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218 (287)
Q Consensus 175 ~~Dv~~a~~aG~~~i~v~~~~~~~~~~~~a~~v~~~l~el~~~~ 218 (287)
..=+.+|++.|++++++.++.. ..+..++.+++++...+
T Consensus 213 ~eKi~AA~~lgi~vivI~RP~~-----~~~~~~~~~~~el~~~l 251 (256)
T TIGR00715 213 LEKVKAAEALGINVIRIARPQT-----IPGVAIFDDISQLNQFV 251 (256)
T ss_pred HHHHHHHHHcCCcEEEEeCCCC-----CCCCccCCCHHHHHHHH
Confidence 4668899999999999988431 12234566766665433
No 339
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=29.04 E-value=94 Score=23.43 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=22.8
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCCChH
Q 023109 93 LPGANRLIKHLSCHGVPMALASNSHRA 119 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~~~~ 119 (287)
.+.+.++++.+++.|+++.+.||....
T Consensus 74 ~~~l~~ll~~lk~~Gl~i~l~Tg~~~~ 100 (147)
T TIGR02826 74 REALLSLLKIFKEKGLKTCLYTGLEPK 100 (147)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCH
Confidence 366889999999999999999987553
No 340
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=28.28 E-value=71 Score=24.69 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=27.3
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHH
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIE 122 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~ 122 (287)
....+.+.+.++.++++|.+++.+|+...+...
T Consensus 82 sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la 114 (179)
T TIGR03127 82 SGETESLVTVAKKAKEIGATVAAITTNPESTLG 114 (179)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEECCCCCchH
Confidence 345678999999999999999999998766554
No 341
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=28.14 E-value=1.4e+02 Score=23.27 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=25.0
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChH
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRA 119 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~ 119 (287)
.-+.+++.++++.+++.|+.+.+.||+...
T Consensus 73 Pll~~~l~~li~~~~~~g~~v~i~TNg~~~ 102 (191)
T TIGR02495 73 PTLQAGLPDFLRKVRELGFEVKLDTNGSNP 102 (191)
T ss_pred ccCcHhHHHHHHHHHHCCCeEEEEeCCCCH
Confidence 445577999999999999999999999643
No 342
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=27.71 E-value=5.2e+02 Score=24.32 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=49.5
Q ss_pred CcHHHHH-HHHHHCCCCEEEEeCCChHH----HHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHH---HHHcCC-C
Q 023109 94 PGANRLI-KHLSCHGVPMALASNSHRAT----IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEA---AKRLNM-E 164 (287)
Q Consensus 94 ~g~~~~l-~~l~~~g~~v~l~T~~~~~~----~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~---~~~l~~-~ 164 (287)
+|+.+-+ +.+++.|.+++++++..... +...+ +..|+. .++.++...+. .|+ .+....+ +...+. .
T Consensus 195 ~g~l~~l~~~l~~~g~k~~iV~d~~v~~~~~~l~~~L-~~~g~~-v~~~v~p~~E~--~ks-l~~v~~~~~~l~~~~~~r 269 (542)
T PRK14021 195 EGAMNHLPQVLGPKPVKVALIHTQPVQRHSDRARTLL-RQGGYE-VSDIVIPDAEA--GKT-IEVANGIWQRLGNEGFTR 269 (542)
T ss_pred CChHHHHHHHHHhcCCeEEEEECccHHHHHHHHHHHH-HhCCCc-eEEEEeCCCcc--cCC-HHHHHHHHHHHHhcCCCC
Confidence 5554444 34555566777776654322 22223 333432 23333322111 122 2333333 233343 3
Q ss_pred CCcEEEEeCCH-hhHHHHHH----cCCeEEEECC
Q 023109 165 PSSSLVIEDSV-IGVVAGKA----AGMEVVAVPS 193 (287)
Q Consensus 165 ~~~~l~iGDs~-~Dv~~a~~----aG~~~i~v~~ 193 (287)
.+-++.||-+. .|+..+.+ .|++.+.+++
T Consensus 270 ~D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 270 SDAIVGLGGGAATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCC
Confidence 45678899877 79988877 4999999988
No 343
>PRK10812 putative DNAse; Provisional
Probab=27.66 E-value=2.9e+02 Score=23.12 Aligned_cols=33 Identities=9% Similarity=0.097 Sum_probs=23.5
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHH
Q 023109 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l 125 (287)
..+..+.+++.++.|+.-.++.+.+.......+
T Consensus 19 ~~d~~~vl~~a~~~gv~~~~~~~~~~~~~~~~~ 51 (265)
T PRK10812 19 HKDVDDVLAKAAARDVKFCLAVATTLPGYRHMR 51 (265)
T ss_pred hcCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 346778999999999977777666655544433
No 344
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=27.38 E-value=28 Score=12.89 Aligned_cols=7 Identities=43% Similarity=0.809 Sum_probs=4.4
Q ss_pred hccCCCc
Q 023109 264 FQNIPRG 270 (287)
Q Consensus 264 ~~~~~~~ 270 (287)
+||-|+|
T Consensus 3 i~nCP~G 9 (9)
T PF00220_consen 3 IRNCPIG 9 (9)
T ss_pred cccCCCC
Confidence 5666665
No 345
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=27.33 E-value=2.9e+02 Score=24.81 Aligned_cols=81 Identities=11% Similarity=0.066 Sum_probs=39.0
Q ss_pred HHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeecc---CCc-CCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 023109 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS---DEV-RTGKPSPDIFLEAAKRLNMEPSSSLVI 171 (287)
Q Consensus 96 ~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~---~~~-~~~kp~~~~~~~~~~~l~~~~~~~l~i 171 (287)
..+-.++++++|..+=+.-+.+....-..-...+.+...-+....+ ... +...+-|+.-+-..+.+|++++++++-
T Consensus 13 l~~~y~~~ka~~L~LdmtRGKPs~eQLdLS~~lL~~~~~~~~~~dG~D~RNY~G~l~Gipe~r~l~a~llgv~~~~viv~ 92 (425)
T PF12897_consen 13 LRKQYEELKAKGLKLDMTRGKPSPEQLDLSNPLLDLPGSSDYLADGTDCRNYPGGLDGIPEARELFAELLGVPPENVIVG 92 (425)
T ss_dssp HHHHHHHHHHTT--EES---S--HHHHHGGGGGGGSSTTCCBECTTEBTTSS-S-SS--HHHHHHHHHHHTS-GGGEEE-
T ss_pred HHHHHHHHHHcCCCcccCCCCCCHHHHhhhHHHhcCCCCccccCCCccccCCCCccCChHHHHHHHHHHhCCCHHHEEEe
Confidence 3345567888888887776665443221111222222111111111 233 445667788888889999999999999
Q ss_pred eCCHh
Q 023109 172 EDSVI 176 (287)
Q Consensus 172 GDs~~ 176 (287)
|+|.-
T Consensus 93 gNSSL 97 (425)
T PF12897_consen 93 GNSSL 97 (425)
T ss_dssp SS-HH
T ss_pred ccchH
Confidence 99873
No 346
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=27.15 E-value=3.7e+02 Score=22.38 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=17.0
Q ss_pred hHHHhhccCCCcceEeeccc
Q 023109 259 VIQMSFQNIPRGSILVGLDY 278 (287)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~ 278 (287)
-++..++.+|...||+.-|+
T Consensus 189 ~~~~~~~~ipldriL~ETD~ 208 (258)
T PRK11449 189 KTRDVIAKLPLASLLLETDA 208 (258)
T ss_pred HHHHHHHhCChhhEEEecCC
Confidence 35788899999999998886
No 347
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=27.08 E-value=70 Score=20.08 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=11.0
Q ss_pred CCcHHHHHHHHHHCCC
Q 023109 93 LPGANRLIKHLSCHGV 108 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~ 108 (287)
..++.++++.|+++|.
T Consensus 51 ~~dv~~fl~~L~~~gl 66 (68)
T PF05402_consen 51 EEDVEEFLEQLREKGL 66 (68)
T ss_dssp HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHCcC
Confidence 3467778888888763
No 348
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=26.66 E-value=1.9e+02 Score=29.28 Aligned_cols=91 Identities=13% Similarity=0.195 Sum_probs=49.6
Q ss_pred CCCCcHHHHHHHHHHCCCCEEEEeCCChHHH-HHHHHhhcC---Ccc--ccceeeccCCcCCCCCCHHHHHHHHHHcCCC
Q 023109 91 KALPGANRLIKHLSCHGVPMALASNSHRATI-ESKISYQHG---WNE--SFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~-~~~l~~~~g---l~~--~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~ 164 (287)
....+..+.++....+|++++.+....-..- ..+. .+.. .+. -|-+.+.-+ .+.|+......+-+.+.++
T Consensus 647 tvP~dy~evl~~Yt~~GfRVIAlA~K~L~~~~~~~~-~~~~Rd~vEs~l~FlGLiVme--NkLK~~T~~VI~eL~~AnI- 722 (1140)
T KOG0208|consen 647 TVPADYQEVLKEYTHQGFRVIALASKELETSTLQKA-QKLSRDTVESNLEFLGLIVME--NKLKEETKRVIDELNRANI- 722 (1140)
T ss_pred cCCccHHHHHHHHHhCCeEEEEEecCccCcchHHHH-hhccHhhhhccceeeEEEEee--cccccccHHHHHHHHhhcc-
Confidence 3457888999999999999887754422221 1111 1111 111 122222211 2455554333333333332
Q ss_pred CCcEEEEeCCH-hhHHHHHHcCC
Q 023109 165 PSSSLVIEDSV-IGVVAGKAAGM 186 (287)
Q Consensus 165 ~~~~l~iGDs~-~Dv~~a~~aG~ 186 (287)
..++.-||+. .-+..||++|+
T Consensus 723 -RtVMcTGDNllTaisVakeCgm 744 (1140)
T KOG0208|consen 723 -RTVMCTGDNLLTAISVAKECGM 744 (1140)
T ss_pred -eEEEEcCCchheeeehhhcccc
Confidence 3455559999 79999999997
No 349
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=26.17 E-value=46 Score=22.14 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=14.2
Q ss_pred cEEEEecCCcccccHHHH
Q 023109 10 SCVILDLDGTLLNTDGMF 27 (287)
Q Consensus 10 k~iifDlDGTL~d~~~~~ 27 (287)
-.++++=|||.++++..+
T Consensus 41 ~~lvL~eDGT~VddEeyF 58 (78)
T PF02017_consen 41 VRLVLEEDGTEVDDEEYF 58 (78)
T ss_dssp CEEEETTTTCBESSCHHH
T ss_pred cEEEEeCCCcEEccHHHH
Confidence 457889999999986544
No 350
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=25.95 E-value=3.7e+02 Score=23.64 Aligned_cols=32 Identities=13% Similarity=0.259 Sum_probs=24.9
Q ss_pred CCCCcEEEEeCCHh---hHHHHHHcCCeEEEECCC
Q 023109 163 MEPSSSLVIEDSVI---GVVAGKAAGMEVVAVPSL 194 (287)
Q Consensus 163 ~~~~~~l~iGDs~~---Dv~~a~~aG~~~i~v~~~ 194 (287)
..|+-++..||+.. -..+|...|++++.+..+
T Consensus 92 ~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 92 LKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred hCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECC
Confidence 45888999999974 455677789999977664
No 351
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=25.88 E-value=3.1e+02 Score=21.11 Aligned_cols=75 Identities=12% Similarity=0.051 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHCCCCEEEEeCCChHH--HHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEe
Q 023109 95 GANRLIKHLSCHGVPMALASNSHRAT--IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (287)
Q Consensus 95 g~~~~l~~l~~~g~~v~l~T~~~~~~--~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iG 172 (287)
=+.++++.+.+.|.+++++-+++... +...+.+.+.- +. +++...... +++-...+++..+-...+++.+|
T Consensus 36 l~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~---l~-ivg~~~g~f---~~~~~~~i~~~I~~~~pdiv~vg 108 (172)
T PF03808_consen 36 LFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPG---LR-IVGYHHGYF---DEEEEEAIINRINASGPDIVFVG 108 (172)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCC---eE-EEEecCCCC---ChhhHHHHHHHHHHcCCCEEEEE
Confidence 35567777888889999997665432 23333222210 11 222221111 33455666666665666788888
Q ss_pred CCHh
Q 023109 173 DSVI 176 (287)
Q Consensus 173 Ds~~ 176 (287)
=+..
T Consensus 109 lG~P 112 (172)
T PF03808_consen 109 LGAP 112 (172)
T ss_pred CCCC
Confidence 7763
No 352
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=25.58 E-value=4e+02 Score=22.24 Aligned_cols=50 Identities=10% Similarity=0.133 Sum_probs=26.4
Q ss_pred HHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCC
Q 023109 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTG 147 (287)
Q Consensus 96 ~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~ 147 (287)
++.++.+....|.+++=++...-......+ +.+.- .....|+.+|+....
T Consensus 69 Vkall~~y~~~GLRlIev~k~~L~~l~~l~-~~l~~-~~~kFIlf~DDLsFe 118 (249)
T PF05673_consen 69 VKALLNEYADQGLRLIEVSKEDLGDLPELL-DLLRD-RPYKFILFCDDLSFE 118 (249)
T ss_pred HHHHHHHHhhcCceEEEECHHHhccHHHHH-HHHhc-CCCCEEEEecCCCCC
Confidence 555666666667666666665555554444 33221 123455555554433
No 353
>PLN02591 tryptophan synthase
Probab=25.45 E-value=4e+02 Score=22.20 Aligned_cols=97 Identities=14% Similarity=0.122 Sum_probs=53.2
Q ss_pred CCcHHHHHHHHHHCCCCEEEE-eCCC-hHHHHHHHHhhcCCccccceeeccCCcC-CCCCCHHHHHHHHHHcCCCCCcEE
Q 023109 93 LPGANRLIKHLSCHGVPMALA-SNSH-RATIESKISYQHGWNESFSVIVGSDEVR-TGKPSPDIFLEAAKRLNMEPSSSL 169 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~-T~~~-~~~~~~~l~~~~gl~~~fd~i~~~~~~~-~~kp~~~~~~~~~~~l~~~~~~~l 169 (287)
.++..++.+.+++.|+..+.+ |.++ ...++.+.....| |=..++...+. .....+..+...++++.-..+--+
T Consensus 117 ~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~g----FIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv 192 (250)
T PLN02591 117 LEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEG----FVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPV 192 (250)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCC----cEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCce
Confidence 367888999999999776655 4444 3445555522223 33343433222 111222333333333322233335
Q ss_pred EEeCC---HhhHHHHHHcCCeEEEECC
Q 023109 170 VIEDS---VIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 170 ~iGDs---~~Dv~~a~~aG~~~i~v~~ 193 (287)
++|=+ +.|+..+...|...+.+.+
T Consensus 193 ~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 193 AVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred EEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 55544 4699999999998888877
No 354
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=25.42 E-value=1.5e+02 Score=29.51 Aligned_cols=46 Identities=11% Similarity=0.223 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEeCCH-hhHHHHHHcCCeEEEECC
Q 023109 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 146 ~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~-~Dv~~a~~aG~~~i~v~~ 193 (287)
..||+...--..++++|++ -++.-||+. .--..|++.|+..+...-
T Consensus 723 ~vr~~a~~av~~Lk~~Gi~--v~mLTGDn~~aA~svA~~VGi~~V~aev 769 (951)
T KOG0207|consen 723 QVRPDAALAVAELKSMGIK--VVMLTGDNDAAARSVAQQVGIDNVYAEV 769 (951)
T ss_pred ccchhHHHHHHHHHhcCce--EEEEcCCCHHHHHHHHHhhCcceEEecc
Confidence 3556555556667777755 366669988 477788888977666554
No 355
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=25.17 E-value=2.9e+02 Score=24.67 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=53.2
Q ss_pred HHHHHHHHCC-CC-EEEEeCCCh--HHHHHHHHhhcCCc-cccceeeccCCcCCCCCCHH-------HHHHHHHHcCCCC
Q 023109 98 RLIKHLSCHG-VP-MALASNSHR--ATIESKISYQHGWN-ESFSVIVGSDEVRTGKPSPD-------IFLEAAKRLNMEP 165 (287)
Q Consensus 98 ~~l~~l~~~g-~~-v~l~T~~~~--~~~~~~l~~~~gl~-~~fd~i~~~~~~~~~kp~~~-------~~~~~~~~l~~~~ 165 (287)
.++.++.+.+ +. .+++|+..+ .+.+..+ +-+++. ..++--+.- .+.+-.+ .+.++++ ...|
T Consensus 21 pli~~~~~~~~~~~~vi~TGQH~d~em~~~~l-e~~~i~~pdy~L~i~~----~~~tl~~~t~~~i~~~~~vl~--~~kP 93 (383)
T COG0381 21 PLVKALEKDPDFELIVIHTGQHRDYEMLDQVL-ELFGIRKPDYDLNIMK----PGQTLGEITGNIIEGLSKVLE--EEKP 93 (383)
T ss_pred HHHHHHHhCCCCceEEEEecccccHHHHHHHH-HHhCCCCCCcchhccc----cCCCHHHHHHHHHHHHHHHHH--hhCC
Confidence 4677777775 44 456688877 7788888 777876 333332221 1111112 2233333 3678
Q ss_pred CcEEEEeCCHhhHHH---HHHcCCeEEEECCC
Q 023109 166 SSSLVIEDSVIGVVA---GKAAGMEVVAVPSL 194 (287)
Q Consensus 166 ~~~l~iGDs~~Dv~~---a~~aG~~~i~v~~~ 194 (287)
+-+++-||+..=+.+ |....+++..+-.|
T Consensus 94 D~VlVhGDT~t~lA~alaa~~~~IpV~HvEAG 125 (383)
T COG0381 94 DLVLVHGDTNTTLAGALAAFYLKIPVGHVEAG 125 (383)
T ss_pred CEEEEeCCcchHHHHHHHHHHhCCceEEEecc
Confidence 888888999966553 44456677666554
No 356
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=25.14 E-value=1.6e+02 Score=23.86 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=23.8
Q ss_pred CCCCCc-HHHHHHHHHHCCCCEEEEeCCCh
Q 023109 90 VKALPG-ANRLIKHLSCHGVPMALASNSHR 118 (287)
Q Consensus 90 ~~~~~g-~~~~l~~l~~~g~~v~l~T~~~~ 118 (287)
.-+.++ +.++++.+++.|+.+++.||+..
T Consensus 49 Pllq~~fl~~l~~~~k~~gi~~~leTnG~~ 78 (213)
T PRK10076 49 VLMQAEFATRFLQRLRLWGVSCAIETAGDA 78 (213)
T ss_pred HHcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 344566 58999999999999999999943
No 357
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=24.79 E-value=4.2e+02 Score=22.27 Aligned_cols=71 Identities=21% Similarity=0.229 Sum_probs=47.0
Q ss_pred CCCEEEEeCCChHHHHH---HHHhhcCCcccccee-eccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHH
Q 023109 107 GVPMALASNSHRATIES---KISYQHGWNESFSVI-VGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGK 182 (287)
Q Consensus 107 g~~v~l~T~~~~~~~~~---~l~~~~gl~~~fd~i-~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~ 182 (287)
-+.|+++|.++...--+ .+ +++|+. +... +++ +.+ | ...++.++++ +|..-+..|++.|-
T Consensus 36 ~VEVVllSRNspdTGlRv~nSI-~hygL~--ItR~~ft~-----G~~-~---~~Yl~af~v~----LFLSan~~DV~~Ai 99 (264)
T PF06189_consen 36 LVEVVLLSRNSPDTGLRVFNSI-RHYGLD--ITRAAFTG-----GES-P---YPYLKAFNVD----LFLSANEDDVQEAI 99 (264)
T ss_pred ceEEEEEecCCHHHHHHHHHhH-HHhCCc--ceeeeecC-----CCC-H---HHHHHHhCCc----eEeeCCHHHHHHHH
Confidence 46789999887665333 34 666774 2222 222 222 2 3345666666 88899999999999
Q ss_pred HcCCeEEEECC
Q 023109 183 AAGMEVVAVPS 193 (287)
Q Consensus 183 ~aG~~~i~v~~ 193 (287)
.+|+....+..
T Consensus 100 ~~G~~Aa~v~~ 110 (264)
T PF06189_consen 100 DAGIPAATVLP 110 (264)
T ss_pred HcCCCcEEeec
Confidence 99998777755
No 358
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=24.18 E-value=37 Score=29.13 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=36.1
Q ss_pred CCCCCCceeeccceeeeccCccccchhHh-HHHhhccCC-CcceEeecccc
Q 023109 231 TLPSEPWYIGGPVVKGLGRGSKLICLQRV-IQMSFQNIP-RGSILVGLDYQ 279 (287)
Q Consensus 231 ~~~~~p~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~-~~~~~~~~~~~ 279 (287)
.+.-.|....|.+.+|..++ +.+|.||| +...=...| .|.-.|=..+.
T Consensus 180 ~lLG~py~i~G~Vv~G~~~G-r~lGfPTaNi~~~~~~~~~~GVYav~v~~~ 229 (304)
T COG0196 180 KLLGRPYSIEGKVVHGQKLG-RTLGFPTANIYLKDNVLPAFGVYAVRVKLD 229 (304)
T ss_pred HhcCCCeEEEEEEEcccccc-cccCCCccccccccccccCCeeEEEEEEEC
Confidence 45567999999999999999 77799999 555555555 77766654444
No 359
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=24.06 E-value=5e+02 Score=22.86 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=55.7
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCCChHH-----HHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHc-CCCCC
Q 023109 93 LPGANRLIKHLSCHGVPMALASNSHRAT-----IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL-NMEPS 166 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~~~~~-----~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l-~~~~~ 166 (287)
.+++.+.++.+++.|.++++++|..... +...+ +.+ .....|.++.+| |..+..+.+.. +++-.
T Consensus 48 ~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l-~~l-~e~GvDaviv~D--------pg~i~l~~e~~p~l~ih 117 (347)
T COG0826 48 VEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYL-DRL-VELGVDAVIVAD--------PGLIMLARERGPDLPIH 117 (347)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHH-HHH-HHcCCCEEEEcC--------HHHHHHHHHhCCCCcEE
Confidence 3568889999999999999998873211 12223 111 111247777665 33434333332 13332
Q ss_pred -cEEEEeCCHhhHHHHHHcCCeEEEECCC
Q 023109 167 -SSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (287)
Q Consensus 167 -~~l~iGDs~~Dv~~a~~aG~~~i~v~~~ 194 (287)
.+-+--.+...+.-+++.|+.-++.+.-
T Consensus 118 ~S~q~~v~N~~~~~f~~~~G~~rvVl~rE 146 (347)
T COG0826 118 VSTQANVTNAETAKFWKELGAKRVVLPRE 146 (347)
T ss_pred EeeeEecCCHHHHHHHHHcCCEEEEeCcc
Confidence 4555567778899999999777776663
No 360
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=23.86 E-value=3.7e+02 Score=24.30 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=32.8
Q ss_pred HHHHHHcCCCCCcEEEEeCCH--hhHHHHHHcCCeEEEECC
Q 023109 155 LEAAKRLNMEPSSSLVIEDSV--IGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 155 ~~~~~~l~~~~~~~l~iGDs~--~Dv~~a~~aG~~~i~v~~ 193 (287)
......+|++|++++|.+--. .++.-|...|+....+.+
T Consensus 113 ~~lvl~~gv~P~riIyanpcK~~s~IkyAa~~gV~~~tfDn 153 (448)
T KOG0622|consen 113 LDLVLSLGVSPERIIYANPCKQVSQIKYAAKHGVSVMTFDN 153 (448)
T ss_pred HHHHHhcCCChHHeEecCCCccHHHHHHHHHcCCeEEeecC
Confidence 456678899999999998766 799999999998887766
No 361
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=23.33 E-value=4.5e+02 Score=22.03 Aligned_cols=26 Identities=8% Similarity=0.086 Sum_probs=19.2
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCCCh
Q 023109 93 LPGANRLIKHLSCHGVPMALASNSHR 118 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~~~ 118 (287)
.+++.+..+.+++.|.++.+.+++..
T Consensus 114 V~d~~ea~~~~~~~~~rVflt~G~~~ 139 (257)
T COG2099 114 VADIEEAAEAAKQLGRRVFLTTGRQN 139 (257)
T ss_pred ecCHHHHHHHHhccCCcEEEecCccc
Confidence 45688888888888877777776643
No 362
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=23.17 E-value=2.3e+02 Score=23.89 Aligned_cols=86 Identities=12% Similarity=0.124 Sum_probs=46.7
Q ss_pred HHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCC-----------C
Q 023109 97 NRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME-----------P 165 (287)
Q Consensus 97 ~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~-----------~ 165 (287)
.++.+.+.+.|+.|.++...+. +-+.+..+-.++-..-..+++.-.....+.....+...++.+|++ .
T Consensus 41 ~~lve~l~~~gv~V~ll~~~~~-~Pd~VFt~D~~~v~~~~avl~r~~~p~R~gE~~~~~~~~~~lgi~i~~~~~~~~~eG 119 (267)
T COG1834 41 EALVEALEKNGVEVHLLPPIEG-LPDQVFTRDPGLVTGEGAVLARMGAPERRGEEEAIKETLESLGIPIYPRVEAGVFEG 119 (267)
T ss_pred HHHHHHHHHCCCEEEEcCcccC-CCcceEeccceeEecccEEEeccCChhhccCHHHHHHHHHHcCCcccccccCCCccc
Confidence 3577778888988888872211 000011011111111112233323344566677788888888875 1
Q ss_pred --------CcEEEEeCCH-hhHHHHHH
Q 023109 166 --------SSSLVIEDSV-IGVVAGKA 183 (287)
Q Consensus 166 --------~~~l~iGDs~-~Dv~~a~~ 183 (287)
.+++++|.|. .|.++++.
T Consensus 120 ~GD~l~~~~~~v~iG~s~RTn~egi~~ 146 (267)
T COG1834 120 AGDVLMDGGDTVYIGYSFRTNLEGIEQ 146 (267)
T ss_pred cccEEEeCCcEEEEEeccccchHHHHH
Confidence 4677788887 57776655
No 363
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=23.11 E-value=91 Score=24.06 Aligned_cols=31 Identities=6% Similarity=0.081 Sum_probs=26.2
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHH
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRAT 120 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~ 120 (287)
....+++.+.++.++++|.+++.+|+.....
T Consensus 111 SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 111 SGNSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 4557899999999999999999999886554
No 364
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=22.97 E-value=92 Score=22.35 Aligned_cols=30 Identities=7% Similarity=0.046 Sum_probs=24.3
Q ss_pred CCCcHHHHHHHHHHCCCCEEEEeCCChHHH
Q 023109 92 ALPGANRLIKHLSCHGVPMALASNSHRATI 121 (287)
Q Consensus 92 ~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~ 121 (287)
-.+...+.++.++++|.+++++|+......
T Consensus 72 ~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l 101 (139)
T cd05013 72 ETKETVEAAEIAKERGAKVIAITDSANSPL 101 (139)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCCCChh
Confidence 346788899999999999999998765543
No 365
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=22.95 E-value=4.4e+02 Score=21.82 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=39.7
Q ss_pred HHHHHHHHHHCCCCEEEEeCCChHHHH---HHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEe
Q 023109 96 ANRLIKHLSCHGVPMALASNSHRATIE---SKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (287)
Q Consensus 96 ~~~~l~~l~~~g~~v~l~T~~~~~~~~---~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iG 172 (287)
+.++++...+.|.+++++-+.+. .++ ..+...+++ + +.+.. .+.-. ++-...+++..+....++++||
T Consensus 94 ~~~ll~~~~~~~~~v~llG~~~~-v~~~a~~~l~~~y~l----~-i~g~~-~Gyf~--~~e~~~i~~~I~~s~~dil~Vg 164 (243)
T PRK03692 94 WEALMARAGKEGTPVFLVGGKPE-VLAQTEAKLRTQWNV----N-IVGSQ-DGYFT--PEQRQALFERIHASGAKIVTVA 164 (243)
T ss_pred HHHHHHHHHhcCCeEEEECCCHH-HHHHHHHHHHHHhCC----E-EEEEe-CCCCC--HHHHHHHHHHHHhcCCCEEEEE
Confidence 45667777778899999955433 333 233222233 2 12211 12222 3344556777777777899888
Q ss_pred CCH
Q 023109 173 DSV 175 (287)
Q Consensus 173 Ds~ 175 (287)
=+.
T Consensus 165 lG~ 167 (243)
T PRK03692 165 MGS 167 (243)
T ss_pred CCC
Confidence 775
No 366
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=22.80 E-value=1e+02 Score=21.97 Aligned_cols=28 Identities=4% Similarity=0.018 Sum_probs=23.1
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCC
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSH 117 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~ 117 (287)
.--.+++.+.++.++++|.+++.+|+..
T Consensus 53 SG~t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 53 SGNTEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3456788999999999999999999654
No 367
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=22.68 E-value=98 Score=23.94 Aligned_cols=33 Identities=6% Similarity=0.079 Sum_probs=27.1
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHH
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIE 122 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~ 122 (287)
....+.+.+.++.++++|.+++.+|+.......
T Consensus 85 sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la 117 (179)
T cd05005 85 SGETSSVVNAAEKAKKAGAKVVLITSNPDSPLA 117 (179)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEECCCCCchH
Confidence 345678899999999999999999998666544
No 368
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.44 E-value=1.3e+02 Score=19.49 Aligned_cols=25 Identities=8% Similarity=0.030 Sum_probs=21.2
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEe
Q 023109 90 VKALPGANRLIKHLSCHGVPMALAS 114 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T 114 (287)
....+++.+.++.++++|.+++.+|
T Consensus 57 sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 57 SGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 4456789999999999999998888
No 369
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=22.35 E-value=49 Score=26.13 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=12.1
Q ss_pred cEEEEecCCccccc
Q 023109 10 SCVILDLDGTLLNT 23 (287)
Q Consensus 10 k~iifDlDGTL~d~ 23 (287)
+.|-||+|||++--
T Consensus 59 ~~v~~D~~GT~m~i 72 (271)
T PF06901_consen 59 HTVTFDFQGTKMVI 72 (271)
T ss_pred eeEEEeccceEEEe
Confidence 58999999999864
No 370
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=22.17 E-value=2.4e+02 Score=24.05 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCeEEEECCCCCc
Q 023109 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ 197 (287)
Q Consensus 152 ~~~~~~~~~l~~~~~~~l~iGDs~~Dv~~a~~aG~~~i~v~~~~~~ 197 (287)
.-+.+++++.|. + ...| |+..|+...--.|..++++.+|.+.
T Consensus 228 ~rL~eiA~~~g~-~--aylI-d~~~ei~~~w~~~~~~VGvTAGASt 269 (294)
T COG0761 228 NRLAEIAKRHGK-P--AYLI-DDAEEIDPEWLKGVKTVGVTAGAST 269 (294)
T ss_pred HHHHHHHHHhCC-C--eEEe-CChHhCCHHHhcCccEEEEecCCCC
Confidence 344455555554 1 2222 4456666666666666666665433
No 371
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=22.08 E-value=1.7e+02 Score=19.40 Aligned_cols=35 Identities=9% Similarity=0.049 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHCCC
Q 023109 71 AKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGV 108 (287)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~ 108 (287)
+.+++...+.+.|.. .-+..+++..+|+.|+++|+
T Consensus 45 tv~eI~~~L~~~Y~~---~e~~~~dV~~fL~~L~~~gl 79 (81)
T TIGR03859 45 SLAEIIQELAQRFPA---AEEIEDDVIAFLAVARAKHW 79 (81)
T ss_pred cHHHHHHHHHHHcCC---hhhHHHHHHHHHHHHHHCcC
Confidence 444444444444332 12344678888988888764
No 372
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=22.02 E-value=14 Score=21.47 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=17.3
Q ss_pred HHHHHHHHCCCCEEEEeCCChHHHHHHH
Q 023109 98 RLIKHLSCHGVPMALASNSHRATIESKI 125 (287)
Q Consensus 98 ~~l~~l~~~g~~v~l~T~~~~~~~~~~l 125 (287)
++.++|++.|...+-+|.+.+....+++
T Consensus 10 ELr~~L~~~G~~~GPIt~tTR~vY~kkL 37 (43)
T PF03020_consen 10 ELREELREYGEPPGPITPTTRKVYEKKL 37 (43)
T ss_dssp CCHHCCCCCT-S-----CCCHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCCcccHHHHHHHH
Confidence 3566788889999999999988877776
No 373
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=21.96 E-value=4.9e+02 Score=22.75 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=25.9
Q ss_pred EEEEeCCHhhHH-HHHHcCCeEEEECCCCCccccccCCcEE
Q 023109 168 SLVIEDSVIGVV-AGKAAGMEVVAVPSLPKQTHRYTAADEV 207 (287)
Q Consensus 168 ~l~iGDs~~Dv~-~a~~aG~~~i~v~~~~~~~~~~~~a~~v 207 (287)
.++||||- .+. -|-..|.+++.+.....+++....+..+
T Consensus 260 ~~vvgdSs-GI~eEa~~lg~P~v~iR~~geRqe~r~~~~nv 299 (346)
T PF02350_consen 260 DLVVGDSS-GIQEEAPSLGKPVVNIRDSGERQEGRERGSNV 299 (346)
T ss_dssp SEEEESSH-HHHHHGGGGT--EEECSSS-S-HHHHHTTSEE
T ss_pred eEEEEcCc-cHHHHHHHhCCeEEEecCCCCCHHHHhhcceE
Confidence 47899999 888 9999999999996555566554444333
No 374
>PRK08005 epimerase; Validated
Probab=21.95 E-value=4.3e+02 Score=21.34 Aligned_cols=94 Identities=12% Similarity=0.124 Sum_probs=58.0
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCC--ChHHHHHHHHhhcCCccccceee--ccCC-cCCCCCCHHHHHHHHHHcCCCCCc
Q 023109 93 LPGANRLIKHLSCHGVPMALASNS--HRATIESKISYQHGWNESFSVIV--GSDE-VRTGKPSPDIFLEAAKRLNMEPSS 167 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~--~~~~~~~~l~~~~gl~~~fd~i~--~~~~-~~~~kp~~~~~~~~~~~l~~~~~~ 167 (287)
.+...++++.+|+.|.+.+++=|. +.+.++..+ .. .|.+. +.+. .+-.+=.+..+.++.+.....++.
T Consensus 92 ~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l-~~------vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~ 164 (210)
T PRK08005 92 VQNPSEILADIRAIGAKAGLALNPATPLLPYRYLA-LQ------LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAA 164 (210)
T ss_pred ccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHH-Hh------cCEEEEEEecCCCccceecHHHHHHHHHHHHhcccC
Confidence 356778999999999999998655 444455444 32 45442 2221 222233345556655444333332
Q ss_pred EEEEeCCH--hhHHHHHHcCCeEEEECC
Q 023109 168 SLVIEDSV--IGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 168 ~l~iGDs~--~Dv~~a~~aG~~~i~v~~ 193 (287)
-+.|+-+. ..+....++|...++..+
T Consensus 165 ~I~VDGGI~~~~i~~l~~aGad~~V~Gs 192 (210)
T PRK08005 165 ECWADGGITLRAARLLAAAGAQHLVIGR 192 (210)
T ss_pred CEEEECCCCHHHHHHHHHCCCCEEEECh
Confidence 37776655 577888999999888776
No 375
>PRK13937 phosphoheptose isomerase; Provisional
Probab=21.82 E-value=1e+02 Score=24.15 Aligned_cols=33 Identities=6% Similarity=0.034 Sum_probs=26.8
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHHH
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIE 122 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~ 122 (287)
.-..+.+.+.++.++++|.+++.+|+...+...
T Consensus 116 sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~ 148 (188)
T PRK13937 116 SGNSPNVLAALEKARELGMKTIGLTGRDGGKMK 148 (188)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhH
Confidence 345688999999999999999999987655443
No 376
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=21.76 E-value=3.9e+02 Score=22.99 Aligned_cols=85 Identities=19% Similarity=0.207 Sum_probs=51.5
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEe
Q 023109 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iG 172 (287)
+|-=.++++++++.|.++-++|.++-.-+-...... ...|..++.. +.|..-+-..+++.+|-.-+.-+..
T Consensus 163 RpRH~~lI~eiR~~Gari~Li~DGDV~~ai~~~~~~----s~vD~~~GiG----GaPEGVlaAaAlkclGG~~qgrL~~- 233 (309)
T cd01516 163 RPRHAALIEEIREAGARIKLIPDGDVAAAIATALPG----SGVDVLMGIG----GAPEGVLAAAALKCLGGEMQGRLLP- 233 (309)
T ss_pred CchHHHHHHHHHHcCCeEEEeccccHHHHHHHhCCC----CCeeEEEECC----CChHHHHHHHHHHhCCceeEEEECC-
Confidence 466778999999999999999999876543222122 3356666543 3343334444556665443322222
Q ss_pred CCHhhHHHHHHcCC
Q 023109 173 DSVIGVVAGKAAGM 186 (287)
Q Consensus 173 Ds~~Dv~~a~~aG~ 186 (287)
.+..+.+.+++.|+
T Consensus 234 ~~~~e~~r~~~~Gi 247 (309)
T cd01516 234 RNEEERARAREMGI 247 (309)
T ss_pred CCHHHHHHHHHcCC
Confidence 33567777777776
No 377
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=21.58 E-value=2.9e+02 Score=19.16 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=15.2
Q ss_pred cEEEEeCCHhhHHHHHHcCCeEEE
Q 023109 167 SSLVIEDSVIGVVAGKAAGMEVVA 190 (287)
Q Consensus 167 ~~l~iGDs~~Dv~~a~~aG~~~i~ 190 (287)
.+++.-++......++.+|+..+.
T Consensus 91 ~ii~~~~~~~~~~~l~~~g~d~vi 114 (116)
T PF02254_consen 91 RIIARVNDPENAELLRQAGADHVI 114 (116)
T ss_dssp EEEEEESSHHHHHHHHHTT-SEEE
T ss_pred eEEEEECCHHHHHHHHHCCcCEEE
Confidence 566666666666777777766554
No 378
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=21.49 E-value=3.8e+02 Score=20.63 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=17.2
Q ss_pred HHHHHHHHHHCCCCEEEEeCCCh
Q 023109 96 ANRLIKHLSCHGVPMALASNSHR 118 (287)
Q Consensus 96 ~~~~l~~l~~~g~~v~l~T~~~~ 118 (287)
+.++++.+.+++.+++++-+++.
T Consensus 35 ~~~ll~~~~~~~~~v~llG~~~~ 57 (171)
T cd06533 35 MPALLELAAQKGLRVFLLGAKPE 57 (171)
T ss_pred HHHHHHHHHHcCCeEEEECCCHH
Confidence 55677888888899999955543
No 379
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=21.46 E-value=1.5e+02 Score=24.47 Aligned_cols=41 Identities=7% Similarity=0.078 Sum_probs=27.3
Q ss_pred HHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeecc
Q 023109 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS 141 (287)
Q Consensus 99 ~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~ 141 (287)
+++...+.++.++++|+.+...+.+.+ ...++. ..|.++++
T Consensus 27 ~l~~~~~~~~~~v~~TGRs~~~~~~~~-~~~~l~-~Pd~~I~s 67 (247)
T PF05116_consen 27 LLEQQARPEILFVYVTGRSLESVLRLL-REYNLP-QPDYIITS 67 (247)
T ss_dssp HHHHHHCCGEEEEEE-SS-HHHHHHHH-HHCT-E-E-SEEEET
T ss_pred HHHHhhCCCceEEEECCCCHHHHHHHH-HhCCCC-CCCEEEec
Confidence 444345567889999999999999898 666764 35777765
No 380
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=21.33 E-value=3.2e+02 Score=19.57 Aligned_cols=23 Identities=13% Similarity=-0.159 Sum_probs=12.9
Q ss_pred EEEEe-CCH-hhHHHHHHcCCeEEE
Q 023109 168 SLVIE-DSV-IGVVAGKAAGMEVVA 190 (287)
Q Consensus 168 ~l~iG-Ds~-~Dv~~a~~aG~~~i~ 190 (287)
.+++| ..+ .+.+.++++|+..+.
T Consensus 83 ~i~~GG~~~~~~~~~~~~~G~d~~~ 107 (122)
T cd02071 83 LVVGGGIIPPEDYELLKEMGVAEIF 107 (122)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEE
Confidence 34554 333 356777788865443
No 381
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=21.14 E-value=4.2e+02 Score=20.86 Aligned_cols=90 Identities=13% Similarity=0.022 Sum_probs=49.0
Q ss_pred HHHHHHHHHHCCCCEEEE-eCC-C-hHHHHHHHHhhcCCccccceeeccCC---cCCCCCCHHHHHHHHHHcCCCCCcEE
Q 023109 96 ANRLIKHLSCHGVPMALA-SNS-H-RATIESKISYQHGWNESFSVIVGSDE---VRTGKPSPDIFLEAAKRLNMEPSSSL 169 (287)
Q Consensus 96 ~~~~l~~l~~~g~~v~l~-T~~-~-~~~~~~~l~~~~gl~~~fd~i~~~~~---~~~~kp~~~~~~~~~~~l~~~~~~~l 169 (287)
..++++.+++.|.++.+. .+. . ...+.... + .|. |.+..... ........+.++++.+.+.. + .+.
T Consensus 91 ~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~-~-~g~----d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~-~-~i~ 162 (206)
T TIGR03128 91 IKGAVKAAKKHGKEVQVDLINVKDKVKRAKELK-E-LGA----DYIGVHTGLDEQAKGQNPFEDLQTILKLVKE-A-RVA 162 (206)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCChHHHHHHHH-H-cCC----CEEEEcCCcCcccCCCCCHHHHHHHHHhcCC-C-cEE
Confidence 478899999999998876 232 2 22333222 2 233 33321111 11112233444555554442 1 233
Q ss_pred EE-eCCHhhHHHHHHcCCeEEEECC
Q 023109 170 VI-EDSVIGVVAGKAAGMEVVAVPS 193 (287)
Q Consensus 170 ~i-GDs~~Dv~~a~~aG~~~i~v~~ 193 (287)
.. |-+..++..+.++|...+.+.+
T Consensus 163 v~GGI~~~n~~~~~~~Ga~~v~vGs 187 (206)
T TIGR03128 163 VAGGINLDTIPDVIKLGPDIVIVGG 187 (206)
T ss_pred EECCcCHHHHHHHHHcCCCEEEEee
Confidence 24 4555789999999999888766
No 382
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=21.11 E-value=5.3e+02 Score=22.03 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCC-CCHHHHH----HHHHHcCCCCCcEE
Q 023109 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGK-PSPDIFL----EAAKRLNMEPSSSL 169 (287)
Q Consensus 95 g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~k-p~~~~~~----~~~~~l~~~~~~~l 169 (287)
...++|+..++.|+-+..+.-.+...++.+++...... -..++-.......- ...+.+. .+++..+..-.=++
T Consensus 5 ~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~--sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~l 82 (288)
T TIGR00167 5 DVKELLQDAKEEGYAIPAFNINNLETINAVLEAAAEEK--SPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVAL 82 (288)
T ss_pred cHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHC--CCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 46778888888888888887777777777763222111 12222222111111 1123332 33333411111223
Q ss_pred EE--eCCHhhHHHHHHcCCeEEEECCCC
Q 023109 170 VI--EDSVIGVVAGKAAGMEVVAVPSLP 195 (287)
Q Consensus 170 ~i--GDs~~Dv~~a~~aG~~~i~v~~~~ 195 (287)
+. |.+..++..|-.+|+.++++..+.
T Consensus 83 HLDHg~~~e~i~~ai~~GftSVMiDgS~ 110 (288)
T TIGR00167 83 HLDHGASEEDCAQAVKAGFSSVMIDGSH 110 (288)
T ss_pred ECCCCCCHHHHHHHHHcCCCEEEecCCC
Confidence 33 334467778888899999988754
No 383
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=20.99 E-value=1.2e+02 Score=27.26 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCHhhHH----HHHHcCCeEEEECCC
Q 023109 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVV----AGKAAGMEVVAVPSL 194 (287)
Q Consensus 152 ~~~~~~~~~l~~~~~~~l~iGDs~~Dv~----~a~~aG~~~i~v~~~ 194 (287)
+-..++++..|---+.+++|||+..|+- ++-..|+.++++-.+
T Consensus 209 ~~Va~~Akk~gkGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEGg 255 (505)
T PF10113_consen 209 EEVAELAKKYGKGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEGG 255 (505)
T ss_pred HHHHHHHHHhCCCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeCC
Confidence 4456677888888899999999997754 555677888877663
No 384
>PLN02423 phosphomannomutase
Probab=20.98 E-value=1.5e+02 Score=24.40 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=24.2
Q ss_pred CCcHHHHHHHHHHCCCCEEEEeCCChHHHHHHH
Q 023109 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (287)
Q Consensus 93 ~~g~~~~l~~l~~~g~~v~l~T~~~~~~~~~~l 125 (287)
.+...+.+++++++ +.++++|+++...+...+
T Consensus 26 ~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~~~ 57 (245)
T PLN02423 26 TPEMLEFMKELRKV-VTVGVVGGSDLSKISEQL 57 (245)
T ss_pred CHHHHHHHHHHHhC-CEEEEECCcCHHHHHHHh
Confidence 34556788889876 999999999776665555
No 385
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=20.94 E-value=99 Score=23.33 Aligned_cols=32 Identities=6% Similarity=0.027 Sum_probs=26.2
Q ss_pred CCCCCcHHHHHHHHHHCCCCEEEEeCCChHHH
Q 023109 90 VKALPGANRLIKHLSCHGVPMALASNSHRATI 121 (287)
Q Consensus 90 ~~~~~g~~~~l~~l~~~g~~v~l~T~~~~~~~ 121 (287)
.-..+.+.+.++.++++|.+++.+|+.+.+..
T Consensus 89 sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l 120 (154)
T TIGR00441 89 SGNSKNVLKAIEAAKDKGMKTITLAGKDGGKM 120 (154)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCCch
Confidence 34567899999999999999999998765543
No 386
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=20.79 E-value=5.6e+02 Score=22.21 Aligned_cols=86 Identities=13% Similarity=0.078 Sum_probs=46.5
Q ss_pred CcHHHHHHHHHHCCCCEEEEeCCC-h--HHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 023109 94 PGANRLIKHLSCHGVPMALASNSH-R--ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (287)
Q Consensus 94 ~g~~~~l~~l~~~g~~v~l~T~~~-~--~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~ 170 (287)
+...++++.+.+.|++++++.+.. . ..++.+. +...-. .++ +- .++-+..-+..+++. .-++
T Consensus 202 e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~-~~~~~~----~~~--~l--~g~~sL~el~ali~~------a~l~ 266 (352)
T PRK10422 202 DKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIA-QGCQTP----PVT--AL--AGKTTFPELGALIDH------AQLF 266 (352)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHH-HhcCCC----ccc--cc--cCCCCHHHHHHHHHh------CCEE
Confidence 456777888877787777664432 2 2223333 221110 011 00 122222222333332 2378
Q ss_pred EeCCHhhHHHHHHcCCeEEEECCC
Q 023109 171 IEDSVIGVVAGKAAGMEVVAVPSL 194 (287)
Q Consensus 171 iGDs~~Dv~~a~~aG~~~i~v~~~ 194 (287)
||....-+++|.+.|.+++.+-.+
T Consensus 267 v~nDSGp~HlAaA~g~P~v~lfGp 290 (352)
T PRK10422 267 IGVDSAPAHIAAAVNTPLICLFGA 290 (352)
T ss_pred EecCCHHHHHHHHcCCCEEEEECC
Confidence 888888899999999999887653
No 387
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=20.71 E-value=3.5e+02 Score=24.68 Aligned_cols=100 Identities=21% Similarity=0.301 Sum_probs=60.1
Q ss_pred CCCCcHHHHHHHHHHC-CCCEEEEe-CC-ChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcC-CCCC
Q 023109 91 KALPGANRLIKHLSCH-GVPMALAS-NS-HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN-MEPS 166 (287)
Q Consensus 91 ~~~~g~~~~l~~l~~~-g~~v~l~T-~~-~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~-~~~~ 166 (287)
.++|.+.+=|+.+.++ |++++-.. +. +...+++-+ ++... ..+|.++ .|..+...-+.+.+.++.+.-. +.|+
T Consensus 138 ~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al-~~ak~-~~~DvvI-vDTAGRl~ide~Lm~El~~Ik~~~~P~ 214 (451)
T COG0541 138 TYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAAL-EKAKE-EGYDVVI-VDTAGRLHIDEELMDELKEIKEVINPD 214 (451)
T ss_pred cCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHH-HHHHH-cCCCEEE-EeCCCcccccHHHHHHHHHHHhhcCCC
Confidence 4678888888887765 55555442 22 223444444 33221 2356655 4666666667777777665554 6899
Q ss_pred cEEEEeCCHhhHHH---HH----HcCCeEEEECC
Q 023109 167 SSLVIEDSVIGVVA---GK----AAGMEVVAVPS 193 (287)
Q Consensus 167 ~~l~iGDs~~Dv~~---a~----~aG~~~i~v~~ 193 (287)
++++|=|+...=.+ |+ +.|+..+.+.-
T Consensus 215 E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTK 248 (451)
T COG0541 215 ETLLVVDAMIGQDAVNTAKAFNEALGITGVILTK 248 (451)
T ss_pred eEEEEEecccchHHHHHHHHHhhhcCCceEEEEc
Confidence 99999999853333 22 24666666654
No 388
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=20.44 E-value=3.1e+02 Score=19.13 Aligned_cols=23 Identities=22% Similarity=0.010 Sum_probs=15.7
Q ss_pred HcCCCCC-cEEEEeCCH-hhHHHHH
Q 023109 160 RLNMEPS-SSLVIEDSV-IGVVAGK 182 (287)
Q Consensus 160 ~l~~~~~-~~l~iGDs~-~Dv~~a~ 182 (287)
.+...|+ .++.||||- .|.+.-.
T Consensus 58 i~~~fP~~kfiLIGDsgq~DpeiY~ 82 (100)
T PF09949_consen 58 ILRDFPERKFILIGDSGQHDPEIYA 82 (100)
T ss_pred HHHHCCCCcEEEEeeCCCcCHHHHH
Confidence 3344554 999999998 5766533
No 389
>PF03603 DNA_III_psi: DNA polymerase III psi subunit; InterPro: IPR004615 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerization to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This family is the psi subunit, the small subunit of the DNA polymerase III holoenzyme in Escherichia coli and related species, whose exact function is not known. It appears to have a narrow taxonomic distribution, being restricted to the gammaproteobacteria.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication; PDB: 1EM8_B 3GLI_O 3SXU_B.
Probab=20.20 E-value=1.7e+02 Score=21.47 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=32.0
Q ss_pred HHHHCCCCEEEEeCCChHHHHHHHHhhcCCccccceeeccCCcCCCCCCHHHHHHHHHHcCCCCCcEEEEe
Q 023109 102 HLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (287)
Q Consensus 102 ~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl~~~fd~i~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~l~iG 172 (287)
.|.+.|++.+-+.....-.-+ ....+.+...-++.+++..... .+ .|..+++.+++.++++.++.
T Consensus 8 ~LqeMGItqW~Lr~P~~L~g~----~~i~lp~~~rLliVs~~~p~~~-~~-L~~dVLrsl~L~~~q~~~lt 72 (128)
T PF03603_consen 8 LLQEMGITQWQLRRPEVLQGE----IAISLPESCRLLIVSDELPQLD-DP-LFQDVLRSLKLTPEQVLHLT 72 (128)
T ss_dssp HHHHCT--EEEES-GGGTS------S-----TT--EEEE-SS---TT-SH-HHHHHHHHTT--GGGEEEE-
T ss_pred HHHHcCCCeEEeCCccccCCC----ccccCcccceEEEEeCCCCCcc-Ch-HHHHHHHHcCCCHHHhhccC
Confidence 467778888888754322211 1223444455666666554322 33 99999999999999999875
No 390
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=20.00 E-value=2.6e+02 Score=19.54 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=25.0
Q ss_pred HHHHHHHHCCCCEEEEeCCChHHHHHHHHhhcCC
Q 023109 98 RLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131 (287)
Q Consensus 98 ~~l~~l~~~g~~v~l~T~~~~~~~~~~l~~~~gl 131 (287)
+...++++.|+++++++-++...++... +..++
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~~~~f~-~~~~~ 36 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEGIEKFC-ELTGF 36 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHHHHHHH-hccCC
Confidence 4567788899999999999886577666 54444
Done!