Query 023111
Match_columns 287
No_of_seqs 227 out of 1261
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 08:31:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01770 sec-independent trans 99.9 1E-24 2.3E-29 190.8 2.9 102 122-237 1-102 (171)
2 PRK04654 sec-independent trans 99.8 6.4E-22 1.4E-26 178.3 0.7 92 122-228 1-92 (214)
3 PRK00404 tatB sec-independent 99.8 1.8E-20 3.9E-25 160.2 4.0 66 122-194 1-66 (141)
4 PRK00708 sec-independent trans 99.8 2.4E-20 5.3E-25 167.7 4.4 73 122-198 1-73 (209)
5 TIGR01410 tatB twin arginine-t 99.8 2.4E-19 5.3E-24 139.6 5.4 72 123-201 1-72 (80)
6 PRK14857 tatA twin arginine tr 99.8 2.2E-18 4.8E-23 137.8 7.7 49 120-168 1-49 (90)
7 PRK01919 tatB sec-independent 99.8 8E-19 1.7E-23 153.8 5.3 65 122-193 1-65 (169)
8 PRK04098 sec-independent trans 99.7 1.2E-18 2.7E-23 151.3 6.2 66 122-194 1-66 (158)
9 PRK14858 tatA twin arginine tr 99.7 1.8E-18 3.8E-23 142.4 5.4 64 122-192 1-64 (108)
10 PRK03100 sec-independent trans 99.7 2.2E-18 4.8E-23 146.5 5.4 70 122-196 1-71 (136)
11 PRK00182 tatB sec-independent 99.7 5.6E-18 1.2E-22 147.4 7.9 69 122-195 1-70 (160)
12 COG1826 TatA Sec-independent p 99.7 9.2E-18 2E-22 133.2 6.2 47 122-168 1-47 (94)
13 PRK01371 sec-independent trans 99.7 8E-17 1.7E-21 137.3 9.8 56 122-180 1-56 (137)
14 PRK14861 tatA twin arginine tr 99.7 1.3E-16 2.7E-21 119.6 6.3 48 121-168 1-48 (61)
15 PRK14859 tatA twin arginine tr 99.7 4E-17 8.6E-22 123.2 3.0 45 122-166 1-45 (63)
16 PRK14860 tatA twin arginine tr 99.7 6.6E-17 1.4E-21 122.4 3.9 45 122-166 1-45 (64)
17 PRK00575 tatA twin arginine tr 99.6 3.4E-16 7.5E-21 125.9 4.7 47 122-168 1-47 (92)
18 PF02416 MttA_Hcf106: mttA/Hcf 99.6 9E-16 2E-20 111.5 5.7 45 125-169 1-45 (53)
19 PRK03625 tatE twin arginine tr 99.6 6.7E-16 1.5E-20 117.9 4.8 46 122-167 1-46 (67)
20 TIGR01411 tatAE twin arginine- 99.6 8.8E-16 1.9E-20 109.6 4.7 45 124-168 1-45 (47)
21 PRK01833 tatA twin arginine tr 99.6 1.4E-15 3E-20 118.2 4.3 46 122-167 1-46 (74)
22 PRK00191 tatA twin arginine tr 99.6 2.5E-15 5.4E-20 119.3 5.2 47 123-169 1-47 (84)
23 PRK04598 tatA twin arginine tr 99.5 2.9E-15 6.3E-20 118.2 3.8 45 122-166 1-45 (81)
24 PRK02958 tatA twin arginine tr 99.5 4E-15 8.7E-20 115.4 4.4 46 122-167 1-46 (73)
25 PRK01470 tatA twin arginine tr 99.5 4.3E-15 9.3E-20 108.2 4.1 44 123-166 1-44 (51)
26 PRK01614 tatE twin arginine tr 99.5 4.4E-15 9.6E-20 118.1 3.4 45 122-166 1-45 (85)
27 PRK04561 tatA twin arginine tr 99.5 5E-15 1.1E-19 115.5 3.5 45 122-166 1-45 (75)
28 PRK03554 tatA twin arginine tr 99.5 8.3E-15 1.8E-19 117.4 4.5 44 122-165 1-44 (89)
29 PRK00442 tatA twin arginine tr 99.5 1.1E-14 2.4E-19 117.2 3.9 45 122-166 1-45 (92)
30 PRK00720 tatA twin arginine tr 99.5 3.3E-14 7.2E-19 111.6 4.2 45 122-166 1-45 (78)
31 PF12732 YtxH: YtxH-like prote 77.1 6.4 0.00014 29.7 5.0 49 131-179 9-58 (74)
32 PRK00708 sec-independent trans 66.3 7.2 0.00016 36.1 3.7 19 147-165 33-51 (209)
33 PF06103 DUF948: Bacterial pro 65.7 17 0.00037 28.1 5.2 32 147-178 18-49 (90)
34 PRK14473 F0F1 ATP synthase sub 65.3 21 0.00046 30.4 6.1 12 120-131 1-12 (164)
35 PRK01371 sec-independent trans 55.8 15 0.00032 32.1 3.6 35 151-185 23-57 (137)
36 PRK14472 F0F1 ATP synthase sub 47.9 69 0.0015 27.6 6.5 14 119-132 10-23 (175)
37 PF07423 DUF1510: Protein of u 43.4 7.3 0.00016 36.1 -0.2 40 109-150 6-45 (217)
38 PRK13454 F0F1 ATP synthase sub 41.9 51 0.0011 29.0 4.8 34 134-167 41-74 (181)
39 PRK07352 F0F1 ATP synthase sub 37.4 1.2E+02 0.0027 26.1 6.4 10 119-128 11-20 (174)
40 COG1687 AzlD Predicted branche 35.5 39 0.00085 28.7 2.9 20 139-158 25-44 (106)
41 KOG3726 Uncharacterized conser 35.3 67 0.0015 34.8 5.3 43 111-155 92-134 (717)
42 PRK13455 F0F1 ATP synthase sub 35.3 1.4E+02 0.0031 25.9 6.6 7 121-127 21-27 (184)
43 PHA02047 phage lambda Rz1-like 34.7 1.6E+02 0.0036 24.8 6.4 70 130-199 5-83 (101)
44 PF10746 Phage_holin_6: Phage 34.4 68 0.0015 25.2 3.9 40 117-162 23-62 (66)
45 PF13730 HTH_36: Helix-turn-he 34.2 1.1E+02 0.0025 20.9 4.7 45 124-168 2-50 (55)
46 PRK00182 tatB sec-independent 30.5 73 0.0016 28.7 4.0 21 144-164 31-51 (160)
47 TIGR02209 ftsL_broad cell divi 30.0 2.1E+02 0.0045 21.5 5.9 31 150-180 26-56 (85)
48 PRK14861 tatA twin arginine tr 29.7 1E+02 0.0022 23.4 4.1 32 151-182 24-55 (61)
49 PF01994 Trm56: tRNA ribose 2' 28.3 25 0.00055 30.3 0.7 38 113-150 23-64 (120)
50 PRK11677 hypothetical protein; 28.0 88 0.0019 27.1 4.0 15 128-142 3-17 (134)
51 PRK03100 sec-independent trans 26.5 93 0.002 27.2 3.8 22 144-165 31-52 (136)
52 PF09680 Tiny_TM_bacill: Prote 26.1 37 0.00081 22.0 1.0 16 128-143 6-21 (24)
53 COG2426 Predicted membrane pro 26.0 66 0.0014 28.5 2.8 45 117-162 10-54 (142)
54 PF06103 DUF948: Bacterial pro 24.2 2E+02 0.0042 22.2 4.9 30 144-173 22-51 (90)
55 CHL00019 atpF ATP synthase CF0 24.1 2.8E+02 0.0061 24.2 6.4 9 120-128 17-25 (184)
56 PF04977 DivIC: Septum formati 20.4 1.7E+02 0.0036 21.3 3.7 44 136-180 6-49 (80)
No 1
>PRK01770 sec-independent translocase; Provisional
Probab=99.90 E-value=1e-24 Score=190.80 Aligned_cols=102 Identities=21% Similarity=0.368 Sum_probs=89.1
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhcCCCCCCCCC
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTD 201 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lqdaek~nl~n 201 (287)
||||||+||+||+||+||||||+|||+++|++|+|+|+||++++ ++++++++|++++|+++.+++..+.++.+
T Consensus 1 MF~IG~~ELllI~vVaLlV~GPerLP~~~r~lg~~i~~~R~~~~-------~~k~e~~~E~~~~El~~~l~~~~~~~~~~ 73 (171)
T PRK01770 1 MFDIGFSELLLVFVIGLVVLGPQRLPVAVKTVAGWIRALRSLAT-------TVQNELTQELKLQELQDSLKKVEKASLTN 73 (171)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHhhHhh
Confidence 99999999999999999999999999999999999999999885 56788999999999999999988888888
Q ss_pred CCCCCCCCCccccccCcCCCCCcccccccCChHHhh
Q 023111 202 TMSTPPSVTSTEDSQTVADPNGAASANKAYTSEEYL 237 (287)
Q Consensus 202 ~s~~els~s~~El~~~a~~~~~A~s~~~py~sed~~ 237 (287)
+.+ ++..+++++ ++.+.++.++|...+..
T Consensus 74 l~~-el~~~~~e~------~~~~~~~~~~~~~~~~~ 102 (171)
T PRK01770 74 LSP-ELKASVDEL------KQAAESMKRSYAANDPE 102 (171)
T ss_pred hhH-HHHHHHHHH------HHHHhhhcccccccCcc
Confidence 877 788888888 66666666777655443
No 2
>PRK04654 sec-independent translocase; Provisional
Probab=99.83 E-value=6.4e-22 Score=178.28 Aligned_cols=92 Identities=28% Similarity=0.399 Sum_probs=77.2
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhcCCCCCCCCC
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTD 201 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lqdaek~nl~n 201 (287)
||||||+|||||+||+||||||+|||+++|++|+|+|+||++++ ++++++++|++++|+++.+++... .+++
T Consensus 1 MFgIG~~ELLlI~VVALlV~GPerLPe~aRtlGk~irk~R~~~~-------~vk~El~~El~~~ELrk~l~~~~~-~i~~ 72 (214)
T PRK04654 1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWD-------SVKQELERELEAEELKRSLQDVQA-SLRE 72 (214)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999999999999999999999999998764 677888888999999998887643 4555
Q ss_pred CCCCCCCCCccccccCcCCCCCccccc
Q 023111 202 TMSTPPSVTSTEDSQTVADPNGAASAN 228 (287)
Q Consensus 202 ~s~~els~s~~El~~~a~~~~~A~s~~ 228 (287)
... +++.+++++ ++++.+++
T Consensus 73 ~~~-~lk~~~~el------~q~a~~~~ 92 (214)
T PRK04654 73 AED-QLRNTQQQV------EQGARALH 92 (214)
T ss_pred HHH-HHHHHHHHH------HHHHHHhh
Confidence 555 777788888 55555554
No 3
>PRK00404 tatB sec-independent translocase; Provisional
Probab=99.80 E-value=1.8e-20 Score=160.16 Aligned_cols=66 Identities=38% Similarity=0.660 Sum_probs=61.2
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhcCC
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNP 194 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lqda 194 (287)
||||||+||+||+||+||||||+|||+++|++|+|+++||++++ ++++++++|++++|+|+.+++.
T Consensus 1 MF~IG~~ELlvI~VVaLlV~GPkkLP~laR~lG~~i~~~rr~~~-------~~k~ei~~E~~~~elr~~l~~~ 66 (141)
T PRK00404 1 MFGISFSELLLVGLVALLVLGPERLPGAARTAGLWIGRLKRSFN-------AIKQEVEREIGADEIRRQLHNE 66 (141)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998774 5677899999999999988863
No 4
>PRK00708 sec-independent translocase; Provisional
Probab=99.80 E-value=2.4e-20 Score=167.70 Aligned_cols=73 Identities=34% Similarity=0.619 Sum_probs=61.1
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhcCCCCCC
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLN 198 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lqdaek~n 198 (287)
||||||+|||||+||+||||||+|||+++|++|+|+++||++++++++ +|++++ ++.+++|+++.+++.++++
T Consensus 1 MFdIG~~ELlvI~vVaLvV~GPkrLP~~~R~lGk~v~k~R~~a~e~r~---~~~e~~-~~~eldd~~k~~~~~~~ld 73 (209)
T PRK00708 1 MFDIGWSELLVIAIVLIVVVGPKDLPPMLRAFGKMTARMRKMAGEFRR---QFDEAL-REAELDDVRQTISDARSLN 73 (209)
T ss_pred CCCccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHh-hhhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999987663 343433 3456788888887765543
No 5
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=99.77 E-value=2.4e-19 Score=139.61 Aligned_cols=72 Identities=29% Similarity=0.528 Sum_probs=62.9
Q ss_pred cCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhcCCCCCCCCC
Q 023111 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTD 201 (287)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lqdaek~nl~n 201 (287)
|||||+||+||+||+||||||+|||+++|++|+++++||++++ +++++++++++.+|+++.+++.++.+..|
T Consensus 1 f~ig~~EllvI~vvallv~GP~kLP~~~r~~G~~i~~~r~~~~-------~~~~~~~~e~~~~el~~~~~~~~~~~~~~ 72 (80)
T TIGR01410 1 FDIGFSELLLIAVVALVVLGPERLPVAIRAVGKFVRRLRGMAS-------DVKNELDEELKAQELDEQLKKAQQLRFLN 72 (80)
T ss_pred CCCcHHHHHHHHHHHHheECchHHHHHHHHHHHHHHHHHHhhH-------hHHHHHHHHhchHhHHHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999885 56677888888999998887665544444
No 6
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=99.75 E-value=2.2e-18 Score=137.79 Aligned_cols=49 Identities=55% Similarity=0.949 Sum_probs=46.3
Q ss_pred ccccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHh
Q 023111 120 ASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (287)
Q Consensus 120 ~~MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elq 168 (287)
|.||||||+||+||+||+||||||+|||+++|++|+++|+||+++++++
T Consensus 1 m~mF~iG~~ElliIlvVaLlvfGP~KLP~lar~lGk~i~~fkk~~~~~~ 49 (90)
T PRK14857 1 MNIFGIGLPEMAVILVIALLVFGPKKLPEIGRSLGKTLKGFQEASKEFE 49 (90)
T ss_pred CCcccccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999887654
No 7
>PRK01919 tatB sec-independent translocase; Provisional
Probab=99.75 E-value=8e-19 Score=153.78 Aligned_cols=65 Identities=35% Similarity=0.584 Sum_probs=58.3
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhcC
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQN 193 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lqd 193 (287)
||||||+||+||+||+||||||+|||+++|++|+++++||++++ ++++++++|++++|+++..++
T Consensus 1 MFdIG~~ElliI~VVALiV~GPekLP~~aRtlGk~i~k~Rr~~~-------d~K~ev~~E~e~dElrk~~~~ 65 (169)
T PRK01919 1 MIDLGLSKLALIGVVALVVIGPERLPRVARTAGALFGRAQRYIN-------DVKAEVSREIELDELRKMKTD 65 (169)
T ss_pred CCCCcHHHHHHHHHHHHheeCchHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999985 566778888888888875443
No 8
>PRK04098 sec-independent translocase; Provisional
Probab=99.75 E-value=1.2e-18 Score=151.25 Aligned_cols=66 Identities=36% Similarity=0.598 Sum_probs=60.1
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhcCC
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNP 194 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lqda 194 (287)
|||||||||+||+|||||||||+|||+++|++|+|+|.||++++ +++++++++++++|+++.+++.
T Consensus 1 MfgiG~~EllvI~vVaLlvfGP~KLP~~~r~lGk~ir~~K~~~~-------~~k~~l~~Ei~~~elk~e~~k~ 66 (158)
T PRK04098 1 MFGMGFFEILVILVVAIIFLGPDKLPQAMVDIAKFFKAVKKTIN-------DAKSTLDKEINIEEIKEEALKY 66 (158)
T ss_pred CCCCcHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999885 4667788888889998877654
No 9
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=99.74 E-value=1.8e-18 Score=142.38 Aligned_cols=64 Identities=36% Similarity=0.714 Sum_probs=53.1
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhc
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQ 192 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lq 192 (287)
||||||+||+||+||+||||||+|||+++|++|+++|+||+++++ ++++++++++..|+++..+
T Consensus 1 MF~iG~~ElliIlvVallvfGPkKLPelar~lGk~i~~fk~~~~d-------~k~~i~~E~~~~e~~~~~~ 64 (108)
T PRK14858 1 MFGIGMPELIVILVIALIVIGPQKLPDLARSLGRGLAEFKKATDD-------FKQSMQEESRTAEEKEKAE 64 (108)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHH
Confidence 899999999999999999999999999999999999999999865 4455555555555554443
No 10
>PRK03100 sec-independent translocase; Provisional
Probab=99.73 E-value=2.2e-18 Score=146.47 Aligned_cols=70 Identities=23% Similarity=0.386 Sum_probs=58.8
Q ss_pred cc-CCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhcCCCC
Q 023111 122 LF-GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNN 196 (287)
Q Consensus 122 MF-gIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lqdaek 196 (287)
|| ||||+||+||+||+||||||+|||+++|++|+|+|+||+++++++ +++++|+. .+++|+++.+++..+
T Consensus 1 Mf~~iG~~EllvI~vVaLvv~GPkrLP~~~r~lG~~vr~~R~~~~~~~---~~~~~elg--~e~~dlrk~l~el~~ 71 (136)
T PRK03100 1 MFANIGWGEMLVLVVAGLVILGPERLPGAIRWTARALRQARDYASGAT---SQLREELG--PEFDDLRKPLGELQK 71 (136)
T ss_pred CcccccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh--hhHHHHHHHHHHHHH
Confidence 78 699999999999999999999999999999999999999987655 34555554 457899987765544
No 11
>PRK00182 tatB sec-independent translocase; Provisional
Probab=99.73 E-value=5.6e-18 Score=147.43 Aligned_cols=69 Identities=22% Similarity=0.413 Sum_probs=57.5
Q ss_pred cc-CCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhcCCC
Q 023111 122 LF-GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPN 195 (287)
Q Consensus 122 MF-gIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lqdae 195 (287)
|| ||||+||+||+||+||||||+|||+++|++|+++|+||+++++++ +++++|+. .+++|+|+.+++..
T Consensus 1 MF~~IG~~EllvIlvIaLlVfGPerLP~~~r~lg~~ir~~R~~~~~~k---~el~~Elg--~e~~elrk~l~~l~ 70 (160)
T PRK00182 1 MFSSVGWGEILLLLIVGLIVIGPERLPRLIEDVRAALLAARTAINNAK---QQLDGDFG--EEFDEFRKPLNQIA 70 (160)
T ss_pred CcccccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh--hHHHHHHHHHHHHH
Confidence 78 599999999999999999999999999999999999999987544 33444444 24789999888643
No 12
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=99.72 E-value=9.2e-18 Score=133.17 Aligned_cols=47 Identities=51% Similarity=0.898 Sum_probs=44.3
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHh
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elq 168 (287)
||+||||||+||+||+||||||+|||+++|++|+++|+||+++++.+
T Consensus 1 M~~ig~~elliIlvV~lllfGpkKLP~l~r~~G~~i~~fKk~~~~~~ 47 (94)
T COG1826 1 MFGIGWSELLIILVVALLVFGPKKLPEAGRDLGKAIREFKKAASDVK 47 (94)
T ss_pred CCCCCHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHhhhH
Confidence 88999999999999999999999999999999999999999886543
No 13
>PRK01371 sec-independent translocase; Provisional
Probab=99.70 E-value=8e-17 Score=137.25 Aligned_cols=56 Identities=38% Similarity=0.705 Sum_probs=50.6
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHh
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLER 180 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsEler 180 (287)
||||||+||+||+||+||||||+|||+++|++|+++|+||+++++++ +++++|+..
T Consensus 1 MfgIG~~EllvIlvVallvfGPeKLP~~ar~lg~~ir~~R~~~~~ak---~~i~~Elg~ 56 (137)
T PRK01371 1 MFGIGPGELVVLVVLAVLVFGPDKLPKAARDAGRTLRQLREMANNAR---NDLRSELGP 56 (137)
T ss_pred CCCccHHHHHHHHHHHhheeCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcc
Confidence 89999999999999999999999999999999999999999998765 456666653
No 14
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=99.66 E-value=1.3e-16 Score=119.62 Aligned_cols=48 Identities=46% Similarity=0.789 Sum_probs=44.6
Q ss_pred cccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHh
Q 023111 121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (287)
Q Consensus 121 ~MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elq 168 (287)
+|+||||+|+++|++|+||||||+|||+++|++|+++|+||+++++++
T Consensus 1 M~~~ig~~ElliI~vi~llvfGp~kLP~l~r~~G~~~~~fk~~~~~~~ 48 (61)
T PRK14861 1 MFSNIGFPGLILILVVALIIFGPKKLPELGKALGKTLREFKKATKELT 48 (61)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366899999999999999999999999999999999999999887655
No 15
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=99.66 E-value=4e-17 Score=123.24 Aligned_cols=45 Identities=42% Similarity=0.832 Sum_probs=43.5
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHH
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~e 166 (287)
|||||++||+||++|+||||||+|||+++|++|+++|+||+++++
T Consensus 1 MfgiG~~ElliIlvv~LlvfGp~kLP~l~r~lGk~i~~frk~~~~ 45 (63)
T PRK14859 1 MFGIGMPELIVILVIVLIVFGAGKLPEIGGGLGKSIKNFKKATSE 45 (63)
T ss_pred CCCccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999999999999999999998764
No 16
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=99.65 E-value=6.6e-17 Score=122.43 Aligned_cols=45 Identities=44% Similarity=0.840 Sum_probs=43.3
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHH
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~e 166 (287)
||||||+||+||++|+||||||+|||+++|++|+++|+||+++++
T Consensus 1 MfgiG~~ElliI~vIalllfGp~kLP~l~r~lGk~ir~fkk~~~~ 45 (64)
T PRK14860 1 MFGFGMPELIVILVIALVVFGPAKLPQLGQALGGAIRNFKKASNE 45 (64)
T ss_pred CCCccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHccc
Confidence 899999999999999999999999999999999999999998764
No 17
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=99.62 E-value=3.4e-16 Score=125.95 Aligned_cols=47 Identities=36% Similarity=0.646 Sum_probs=44.0
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHh
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elq 168 (287)
|||||+|||+||+||+||||||+|||+++|++|+++|+||+.+++++
T Consensus 1 m~~iG~~ElliIlvi~LllFGpkKLPel~r~lGk~ir~fK~a~~~~~ 47 (92)
T PRK00575 1 MGSLSPWHWAILAVVVILLFGAKKLPDAARSLGKSLRIFKSEVKEMQ 47 (92)
T ss_pred CCcccHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 89999999999999999999999999999999999999998876543
No 18
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=99.61 E-value=9e-16 Score=111.54 Aligned_cols=45 Identities=56% Similarity=0.928 Sum_probs=40.4
Q ss_pred CChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhh
Q 023111 125 VGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (287)
Q Consensus 125 IG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd 169 (287)
||++||+||+||+||||||+|||+++|++|+++|+||++++++++
T Consensus 1 ig~~El~iI~vvalllfGp~kLP~~~r~lG~~ir~fk~~~~~~~~ 45 (53)
T PF02416_consen 1 IGFPELLIILVVALLLFGPKKLPELARSLGKAIREFKKAINEAKE 45 (53)
T ss_dssp S-HHHHHHHHHHHHHHS-TTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 699999999999999999999999999999999999999876653
No 19
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=99.60 E-value=6.7e-16 Score=117.87 Aligned_cols=46 Identities=22% Similarity=0.505 Sum_probs=43.5
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHH
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~el 167 (287)
|||||||||+||++|+||||||+|||+++|++|+++|.||+.+++.
T Consensus 1 M~~ig~~elliIlvI~lllFGpkKLp~lg~~lGk~i~~Fk~~~~~~ 46 (67)
T PRK03625 1 MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMNDD 46 (67)
T ss_pred CCCCcHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999877643
No 20
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=99.60 E-value=8.8e-16 Score=109.63 Aligned_cols=45 Identities=44% Similarity=0.805 Sum_probs=42.2
Q ss_pred CCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHh
Q 023111 124 GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (287)
Q Consensus 124 gIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elq 168 (287)
|||++|+++|++|+|+||||+|||+++|++|+++|+||+++++.+
T Consensus 1 gig~~ElliI~vi~llvfGp~kLP~~~r~lG~~i~~fk~~~~~~~ 45 (47)
T TIGR01411 1 GLSPPEWLIILVVILLLFGAKKLPELGRDLGKAIKEFKKALKEEE 45 (47)
T ss_pred CCCHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHHHhhccc
Confidence 689999999999999999999999999999999999999887543
No 21
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=99.58 E-value=1.4e-15 Score=118.21 Aligned_cols=46 Identities=24% Similarity=0.515 Sum_probs=43.5
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHH
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~el 167 (287)
|||||+|||+||++|+||+|||+|||+++|++|+++|+||+.+++.
T Consensus 1 m~g~g~~elliIl~i~lllFG~kKLP~l~~~lGk~ik~Fkk~~~~~ 46 (74)
T PRK01833 1 MGGISIWQLLIIVAIIVLLFGTKKLRTLGTDLGESVKGFKKAMADD 46 (74)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999887643
No 22
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=99.57 E-value=2.5e-15 Score=119.30 Aligned_cols=47 Identities=28% Similarity=0.640 Sum_probs=43.5
Q ss_pred cCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhh
Q 023111 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (287)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd 169 (287)
+||||+||+||+||+||||||+|||+++|++|+++|+||+.++++++
T Consensus 1 m~ig~~ElliI~vI~lllFGp~KLP~~~r~lGk~ir~FK~~~~~~~~ 47 (84)
T PRK00191 1 MSLGPWEIGIIVLLIIVLFGAKKLPDAARSIGRSMRIFKSEVKEMSK 47 (84)
T ss_pred CCCcHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 48999999999999999999999999999999999999998876543
No 23
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=99.55 E-value=2.9e-15 Score=118.17 Aligned_cols=45 Identities=29% Similarity=0.614 Sum_probs=43.0
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHH
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~e 166 (287)
|||+|+|||+||+||+||||||+|||+++|++|+++|+||+.+++
T Consensus 1 m~glg~~elliIlvivlllFG~kKLPelg~~lGk~i~~FKk~~~~ 45 (81)
T PRK04598 1 MGGISIWQLLIIAVIVVLLFGTKKLRGIGSDLGSAVKGFKKAMSE 45 (81)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhcc
Confidence 899999999999999999999999999999999999999987754
No 24
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=99.55 E-value=4e-15 Score=115.37 Aligned_cols=46 Identities=26% Similarity=0.457 Sum_probs=43.4
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHH
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~el 167 (287)
|+++|+|||+||++|+||||||+|||+++|++|+++|+||+.+++.
T Consensus 1 mg~~g~~elliIl~IvlllFG~kKLPelgr~lGkair~FK~~~~~~ 46 (73)
T PRK02958 1 MGSFSIWHWLIVLVIVVLVFGTKKLRNIGSDLGGAVKGFKDGMKEG 46 (73)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhccc
Confidence 7899999999999999999999999999999999999999877653
No 25
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=99.54 E-value=4.3e-15 Score=108.22 Aligned_cols=44 Identities=25% Similarity=0.574 Sum_probs=41.4
Q ss_pred cCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHH
Q 023111 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (287)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~e 166 (287)
.|||++||+||++|+||||||+|||+++|++|+++|+||+.+++
T Consensus 1 mgig~~elliI~vi~llvFGp~KLP~l~r~lG~~i~~Fk~~~~~ 44 (51)
T PRK01470 1 MGMSFSHLLIVLLIIFVLFGAGKLPQVMSDLAKGLKAFKDGMKD 44 (51)
T ss_pred CCCCHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHHHhcc
Confidence 37999999999999999999999999999999999999987754
No 26
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=99.53 E-value=4.4e-15 Score=118.05 Aligned_cols=45 Identities=29% Similarity=0.669 Sum_probs=42.8
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHH
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~e 166 (287)
|||||+|||+||+||+||+|||+|||+++|++|+.+|+||+.+++
T Consensus 1 M~GlG~~ELLIIlvIvLLLFG~kKLPeLgr~LGkaIkeFKka~~e 45 (85)
T PRK01614 1 MEGLSITKLLVVGILIVLLFGTSKLRTLGADLGAALKGFKKAMRN 45 (85)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhcc
Confidence 899999999999999999999999999999999999999987653
No 27
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=99.53 E-value=5e-15 Score=115.53 Aligned_cols=45 Identities=31% Similarity=0.495 Sum_probs=43.0
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHH
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~e 166 (287)
|+++|+|||+||++|+||||||+|||+++|++|++++.||+.+++
T Consensus 1 Mgg~s~~ellIIlvIvlLlFG~~KLPel~r~lGk~ik~FKk~~~e 45 (75)
T PRK04561 1 MGSFSIWHWLVVLVIVLLVFGTKRLTSGAKDLGSAVKEFKKGMHD 45 (75)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999999999999987764
No 28
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=99.52 E-value=8.3e-15 Score=117.41 Aligned_cols=44 Identities=27% Similarity=0.628 Sum_probs=42.1
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHH
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR 165 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~ 165 (287)
|||+|+|||+||+||+||||||+|||+++|.+|+++|+||+.++
T Consensus 1 M~glG~~eLlIIlvIvLLlFG~kKLPelgr~LGkaireFKka~~ 44 (89)
T PRK03554 1 MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMS 44 (89)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhc
Confidence 88999999999999999999999999999999999999998664
No 29
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=99.50 E-value=1.1e-14 Score=117.22 Aligned_cols=45 Identities=29% Similarity=0.478 Sum_probs=42.6
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHH
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~e 166 (287)
|+++|+|||+||++|+||||||+|||+++|.+|+++|+||+.+++
T Consensus 1 Mg~~g~~elliIlvIvlllFG~~KLPelg~~lGk~ik~FKka~~e 45 (92)
T PRK00442 1 MGIFDWKHWIVILVVVVLVFGTKKLKNLGSDVGESIKGFRKAMNE 45 (92)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999999999999987653
No 30
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=99.47 E-value=3.3e-14 Score=111.55 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=42.7
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHH
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~e 166 (287)
||++|+|||+||+||+||+|||+|||+++|++|++++.||+.+++
T Consensus 1 Mgg~g~~ellIIlvIvlllFG~kKLP~l~~~lGk~ik~FKk~~~~ 45 (78)
T PRK00720 1 MGSFSIWHWLIVLAVVLLLFGRGKISELMGDVAKGIKSFKKGMAD 45 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhcc
Confidence 899999999999999999999999999999999999999987654
No 31
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=77.10 E-value=6.4 Score=29.73 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=37.9
Q ss_pred HHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHH-HHHHHH
Q 023111 131 LVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSRE-FKSTLE 179 (287)
Q Consensus 131 LVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e-~KsEle 179 (287)
.++++++-++|-|+.=.++=+.+......++..+.++.+...+ +++..+
T Consensus 9 a~~Ga~~glL~aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~ 58 (74)
T PF12732_consen 9 AAAGAAAGLLFAPKSGKETREKLKDKAEDLKDKAKDLYEEAKEKVKEKAE 58 (74)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888899999999999999999999988887766544333 444443
No 32
>PRK00708 sec-independent translocase; Provisional
Probab=66.34 E-value=7.2 Score=36.15 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 023111 147 AEVARNLGKTLRAFQPTIR 165 (287)
Q Consensus 147 PelaRtlGK~IR~fR~~~~ 165 (287)
-..+|.+-++.++||+.++
T Consensus 33 Gk~v~k~R~~a~e~r~~~~ 51 (209)
T PRK00708 33 GKMTARMRKMAGEFRRQFD 51 (209)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555444
No 33
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=65.70 E-value=17 Score=28.05 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Q 023111 147 AEVARNLGKTLRAFQPTIRELQDVSREFKSTL 178 (287)
Q Consensus 147 PelaRtlGK~IR~fR~~~~elqd~s~e~KsEl 178 (287)
=...+.+++.++++++.++.+++..+.+..|.
T Consensus 18 ~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~ 49 (90)
T PF06103_consen 18 IKVLKKLKKTLDEVNKTIDTLQEQVDPITKEI 49 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34555666667776666666655554444444
No 34
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=65.33 E-value=21 Score=30.36 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=9.0
Q ss_pred ccccCCChhHHH
Q 023111 120 ASLFGVGAPEAL 131 (287)
Q Consensus 120 ~~MFgIG~~ELL 131 (287)
|.|||+.|+-++
T Consensus 1 ~~~~~~~~~~~~ 12 (164)
T PRK14473 1 MEKLGINLGLLI 12 (164)
T ss_pred CCcccCcHHHHH
Confidence 569999877654
No 35
>PRK01371 sec-independent translocase; Provisional
Probab=55.80 E-value=15 Score=32.14 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcc
Q 023111 151 RNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLD 185 (287)
Q Consensus 151 RtlGK~IR~fR~~~~elqd~s~e~KsElerEiele 185 (287)
+.|=+.+|.+.++++++++..+++++++..|++.+
T Consensus 23 eKLP~~ar~lg~~ir~~R~~~~~ak~~i~~Elg~e 57 (137)
T PRK01371 23 DKLPKAARDAGRTLRQLREMANNARNDLRSELGPE 57 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 66777888888888888888899999999888853
No 36
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=47.86 E-value=69 Score=27.64 Aligned_cols=14 Identities=7% Similarity=-0.033 Sum_probs=9.2
Q ss_pred eccccCCChhHHHH
Q 023111 119 YASLFGVGAPEALV 132 (287)
Q Consensus 119 ~~~MFgIG~~ELLV 132 (287)
-++|||+.++.+++
T Consensus 10 ~~~~~~~~~~~~~~ 23 (175)
T PRK14472 10 SGGLLSPNPGLIFW 23 (175)
T ss_pred cCCccCCCHHHHHH
Confidence 45688988655543
No 37
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=43.43 E-value=7.3 Score=36.13 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=24.1
Q ss_pred hhhhccccceeccccCCChhHHHHHHhhhhheeCCccHHHHH
Q 023111 109 KKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVA 150 (287)
Q Consensus 109 ~~~~~~~~~~~~~MFgIG~~ELLVIlVVALLVfGPkKLPela 150 (287)
|.+|.|.+.+++.+++|-. ||||+|.+-||||-..=|...
T Consensus 6 r~KrRK~N~iLNiaI~IV~--lLIiiva~~lf~~~~~~~~~~ 45 (217)
T PF07423_consen 6 RQKRRKTNKILNIAIGIVS--LLIIIVAYQLFFGGDDSPAAS 45 (217)
T ss_pred HHHhhhhhhhHHHHHHHHH--HHHHHHhhhheecCCCchhhh
Confidence 3333345677777666543 677777777888665555443
No 38
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=41.91 E-value=51 Score=28.99 Aligned_cols=34 Identities=12% Similarity=0.126 Sum_probs=16.8
Q ss_pred HhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHH
Q 023111 134 GVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (287)
Q Consensus 134 lVVALLVfGPkKLPelaRtlGK~IR~fR~~~~el 167 (287)
++|.++|++-=-+|.+.+.+-+--..+++...+.
T Consensus 41 F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~A 74 (181)
T PRK13454 41 LVAIYFVLTRVALPRIGAVLAERQGTITNDLAAA 74 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344444432235666666655555555554443
No 39
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=37.38 E-value=1.2e+02 Score=26.09 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=6.0
Q ss_pred eccccCCChh
Q 023111 119 YASLFGVGAP 128 (287)
Q Consensus 119 ~~~MFgIG~~ 128 (287)
+.+|||+.++
T Consensus 11 ~~~~~~~~~~ 20 (174)
T PRK07352 11 AEGGFGLNLN 20 (174)
T ss_pred ccCCCCCchh
Confidence 3566776654
No 40
>COG1687 AzlD Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism]
Probab=35.51 E-value=39 Score=28.65 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=18.3
Q ss_pred heeCCccHHHHHHHHHHHHH
Q 023111 139 LVFGPKGLAEVARNLGKTLR 158 (287)
Q Consensus 139 LVfGPkKLPelaRtlGK~IR 158 (287)
++|++.|.|++.+.+||++-
T Consensus 25 ~if~~~~ppq~v~~lgk~lP 44 (106)
T COG1687 25 LIFKSGRPPQFVGYLGKVLP 44 (106)
T ss_pred HhcCCCCchHHHHHHHHhcC
Confidence 68999999999999999973
No 41
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.32 E-value=67 Score=34.84 Aligned_cols=43 Identities=26% Similarity=0.476 Sum_probs=33.9
Q ss_pred hhccccceeccccCCChhHHHHHHhhhhheeCCccHHHHHHHHHH
Q 023111 111 RRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGK 155 (287)
Q Consensus 111 ~~~~~~~~~~~MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK 155 (287)
=||...-++-.+||-+..-++.+++.+++++|| ...+.+++++
T Consensus 92 vr~~~llllp~~~gk~grt~l~v~a~a~l~~GP--iaNl~~N~~~ 134 (717)
T KOG3726|consen 92 VRAAKLLLLPEAFGKSGRTILLVFAFATLIFGP--IANLIGNIHQ 134 (717)
T ss_pred HHHHHHHHhHHHHccCCchhhHHHHHHHHHhCc--HHHHHHhHHH
Confidence 377888889999999999999999999999999 3344444443
No 42
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=35.28 E-value=1.4e+02 Score=25.89 Aligned_cols=7 Identities=14% Similarity=0.558 Sum_probs=3.7
Q ss_pred cccCCCh
Q 023111 121 SLFGVGA 127 (287)
Q Consensus 121 ~MFgIG~ 127 (287)
+||++.+
T Consensus 21 ~~~~~~~ 27 (184)
T PRK13455 21 PFFSLSN 27 (184)
T ss_pred CCCCCcc
Confidence 4666543
No 43
>PHA02047 phage lambda Rz1-like protein
Probab=34.74 E-value=1.6e+02 Score=24.85 Aligned_cols=70 Identities=11% Similarity=0.136 Sum_probs=36.6
Q ss_pred HHHHHhhhhheeCCccHHHH-HHHHHHHHHHHhHHHHHHhhhHH---HHHHH---HH--hhcCcccchhhhcCCCCCCC
Q 023111 130 ALVIGVVALLVFGPKGLAEV-ARNLGKTLRAFQPTIRELQDVSR---EFKST---LE--REIGLDDISTSTQNPNNLNR 199 (287)
Q Consensus 130 LLVIlVVALLVfGPkKLPel-aRtlGK~IR~fR~~~~elqd~s~---e~KsE---le--rEieleELrk~lqdaek~nl 199 (287)
++.|++++++.+|..-.-.. -|.+|..=++.++..+.++.... ..+.. ++ .+-.-+|++..+++-.+|..
T Consensus 5 ~~~~~~~v~~~~g~~y~~~~~~r~~g~~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~~WaD 83 (101)
T PHA02047 5 IVAILVLVVVALGASYGFVQSYRALGIAHEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNRPWAD 83 (101)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 45566666666665443333 56677777777766665543211 11111 11 23445666677776555543
No 44
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=34.45 E-value=68 Score=25.23 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=28.2
Q ss_pred ceeccccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhH
Q 023111 117 VFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQP 162 (287)
Q Consensus 117 ~~~~~MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~ 162 (287)
+....|+|+++.|++.|+-++..|+ +++-.+=+++++-|+
T Consensus 23 ~~a~~f~GLslneWfyiati~Ytvl------Qig~~v~k~v~~~kr 62 (66)
T PF10746_consen 23 VVARYFWGLSLNEWFYIATIAYTVL------QIGYLVWKKVRDWKR 62 (66)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 4455568999999999999988765 445555555555443
No 45
>PF13730 HTH_36: Helix-turn-helix domain
Probab=34.20 E-value=1.1e+02 Score=20.93 Aligned_cols=45 Identities=24% Similarity=0.295 Sum_probs=34.3
Q ss_pred CCChhHHHHHHhhhhheeCCc----cHHHHHHHHHHHHHHHhHHHHHHh
Q 023111 124 GVGAPEALVIGVVALLVFGPK----GLAEVARNLGKTLRAFQPTIRELQ 168 (287)
Q Consensus 124 gIG~~ELLVIlVVALLVfGPk----KLPelaRtlGK~IR~fR~~~~elq 168 (287)
+++..|.+|.+.+.-..-+.. ....+++.+|-..+.+++.+++++
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~g~s~~Tv~~~i~~L~ 50 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDLGVSRRTVQRAIKELE 50 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 577788888888777763333 378899999999899998887664
No 46
>PRK00182 tatB sec-independent translocase; Provisional
Probab=30.50 E-value=73 Score=28.66 Aligned_cols=21 Identities=0% Similarity=0.034 Sum_probs=10.8
Q ss_pred ccHHHHHHHHHHHHHHHhHHH
Q 023111 144 KGLAEVARNLGKTLRAFQPTI 164 (287)
Q Consensus 144 kKLPelaRtlGK~IR~fR~~~ 164 (287)
+.|-..+|.+-+++..++..+
T Consensus 31 r~lg~~ir~~R~~~~~~k~el 51 (160)
T PRK00182 31 EDVRAALLAARTAINNAKQQL 51 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555443
No 47
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=30.02 E-value=2.1e+02 Score=21.48 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhHHHHHHhhhHHHHHHHHHh
Q 023111 150 ARNLGKTLRAFQPTIRELQDVSREFKSTLER 180 (287)
Q Consensus 150 aRtlGK~IR~fR~~~~elqd~s~e~KsEler 180 (287)
.+.+-.-+...+....++++..++++.|+..
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444555555543
No 48
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=29.66 E-value=1e+02 Score=23.45 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhc
Q 023111 151 RNLGKTLRAFQPTIRELQDVSREFKSTLEREI 182 (287)
Q Consensus 151 RtlGK~IR~fR~~~~elqd~s~e~KsElerEi 182 (287)
+.+-+..|.+-++++++++..++++++.+.+.
T Consensus 24 ~kLP~l~r~~G~~~~~fk~~~~~~~~~~~~~~ 55 (61)
T PRK14861 24 KKLPELGKALGKTLREFKKATKELTDDDFQEK 55 (61)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Confidence 56667777777778888877777777766443
No 49
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=28.25 E-value=25 Score=30.30 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=23.5
Q ss_pred ccccceeccccCCChhHHHHHHh----hhhheeCCccHHHHH
Q 023111 113 CKRGVFYASLFGVGAPEALVIGV----VALLVFGPKGLAEVA 150 (287)
Q Consensus 113 ~~~~~~~~~MFgIG~~ELLVIlV----VALLVfGPkKLPela 150 (287)
..+.++|..|+|+...+.+=-+= =.|||+|.+|.|.-+
T Consensus 23 ~~G~VVHLTMYG~~i~dvi~~Ir~~~~~~lvVVGaeKVP~ev 64 (120)
T PF01994_consen 23 KGGKVVHLTMYGENIDDVIDEIRESCKDLLVVVGAEKVPGEV 64 (120)
T ss_dssp -SSEEEEE-TTSEEHHHCHHHHHHCTSEEEEEE-SS---CCH
T ss_pred cCCeEEEEEecCCchHHHHHHHhccCCCEEEEECCCcCCHHH
Confidence 46889999999999888443222 148999999999544
No 50
>PRK11677 hypothetical protein; Provisional
Probab=28.04 E-value=88 Score=27.14 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=10.0
Q ss_pred hHHHHHHhhhhheeC
Q 023111 128 PEALVIGVVALLVFG 142 (287)
Q Consensus 128 ~ELLVIlVVALLVfG 142 (287)
|.+.+|++|+-+|+|
T Consensus 3 W~~a~i~livG~iiG 17 (134)
T PRK11677 3 WEYALIGLVVGIIIG 17 (134)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666666666
No 51
>PRK03100 sec-independent translocase; Provisional
Probab=26.46 E-value=93 Score=27.21 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=11.4
Q ss_pred ccHHHHHHHHHHHHHHHhHHHH
Q 023111 144 KGLAEVARNLGKTLRAFQPTIR 165 (287)
Q Consensus 144 kKLPelaRtlGK~IR~fR~~~~ 165 (287)
+.|-..+|.+-+++..+++.++
T Consensus 31 r~lG~~vr~~R~~~~~~~~~~~ 52 (136)
T PRK03100 31 RWTARALRQARDYASGATSQLR 52 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544
No 52
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=26.13 E-value=37 Score=22.02 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=12.1
Q ss_pred hHHHHHHhhhhheeCC
Q 023111 128 PEALVIGVVALLVFGP 143 (287)
Q Consensus 128 ~ELLVIlVVALLVfGP 143 (287)
.-+++++.|.|+++|-
T Consensus 6 FalivVLFILLiIvG~ 21 (24)
T PF09680_consen 6 FALIVVLFILLIIVGA 21 (24)
T ss_pred chhHHHHHHHHHHhcc
Confidence 4577888888888874
No 53
>COG2426 Predicted membrane protein [Function unknown]
Probab=26.04 E-value=66 Score=28.52 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=38.4
Q ss_pred ceeccccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhH
Q 023111 117 VFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQP 162 (287)
Q Consensus 117 ~~~~~MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~ 162 (287)
++..--+|++++|-+...+++++++++ -||.+.+.+-+++-+++.
T Consensus 10 i~~gl~~G~~~~Eal~~silGvL~l~~-lL~~~l~~id~im~kl~~ 54 (142)
T COG2426 10 IPLGLALGLSPLEALLLSILGVLPLSL-LLPLLLDPIDRIMLKLKW 54 (142)
T ss_pred hhhHHHhCCCHHHHHHHHHHHHhhHHH-HHHHHHhHHHHHHHHHhh
Confidence 455666899999999999999988886 489999999999888875
No 54
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=24.25 E-value=2e+02 Score=22.16 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=18.3
Q ss_pred ccHHHHHHHHHHHHHHHhHHHHHHhhhHHH
Q 023111 144 KGLAEVARNLGKTLRAFQPTIRELQDVSRE 173 (287)
Q Consensus 144 kKLPelaRtlGK~IR~fR~~~~elqd~s~e 173 (287)
.+|-+.++.+-+.++.+++-+..+.+..++
T Consensus 22 ~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ 51 (90)
T PF06103_consen 22 KKLKKTLDEVNKTIDTLQEQVDPITKEIND 51 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 466666666677776666666555544433
No 55
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=24.07 E-value=2.8e+02 Score=24.17 Aligned_cols=9 Identities=33% Similarity=0.545 Sum_probs=5.7
Q ss_pred ccccCCChh
Q 023111 120 ASLFGVGAP 128 (287)
Q Consensus 120 ~~MFgIG~~ 128 (287)
.+|||+.++
T Consensus 17 ~~~f~~n~~ 25 (184)
T CHL00019 17 AGSFGFNTD 25 (184)
T ss_pred cCccCCcch
Confidence 357887654
No 56
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=20.39 E-value=1.7e+02 Score=21.31 Aligned_cols=44 Identities=34% Similarity=0.564 Sum_probs=20.8
Q ss_pred hhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHh
Q 023111 136 VALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLER 180 (287)
Q Consensus 136 VALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsEler 180 (287)
+.++++|-..+-.+ ..+-+-+..+++...+++...++++.+++.
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 6 VIFLVFGISGYSRY-YQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred hhHHHHhcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443444333 334444555555555555444555555543
Done!