Query 023111
Match_columns 287
No_of_seqs 227 out of 1261
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 16:33:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l16_A SEC-independent protein 99.8 2.6E-19 9E-24 138.3 5.3 62 121-189 1-62 (78)
2 2cqq_A RSGI RUH-037, DNAJ homo 23.4 51 0.0018 24.3 2.6 34 133-166 18-54 (72)
3 2yy8_A ATRM56, UPF0106 protein 19.7 24 0.00083 31.5 0.2 40 114-153 74-120 (201)
4 2gxg_A 146AA long hypothetical 17.3 1.1E+02 0.0038 22.6 3.4 41 122-165 32-72 (146)
5 2f95_B Sensory rhodopsin II tr 16.7 47 0.0016 25.0 1.2 18 150-167 80-97 (163)
6 1gp7_A Phospholipase A2; snake 16.0 44 0.0015 27.9 0.9 30 127-156 3-32 (151)
7 3vjz_A DMP19, putative unchara 15.7 1.8E+02 0.006 25.2 4.6 41 126-166 71-113 (166)
8 2o3a_A UPF0106 protein AF_0751 11.6 45 0.0015 29.3 -0.2 38 114-151 75-115 (178)
9 1okr_A MECI, methicillin resis 11.5 4.5E+02 0.015 19.0 6.0 33 121-155 4-36 (123)
10 3oop_A LIN2960 protein; protei 10.8 2.8E+02 0.0097 20.4 4.1 41 123-165 33-73 (143)
No 1
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=99.76 E-value=2.6e-19 Score=138.33 Aligned_cols=62 Identities=32% Similarity=0.571 Sum_probs=46.8
Q ss_pred cccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchh
Q 023111 121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDIST 189 (287)
Q Consensus 121 ~MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk 189 (287)
+|||||+|||+||+||+||||||+|||+++|++|+++|+||+++++++ ++.+++.+.+|+++
T Consensus 1 MMf~ig~~ElliIlvVaLlvfGpkkLP~l~r~lGk~ir~fK~~~~~~~-------~e~~~~~~~~el~~ 62 (78)
T 2l16_A 1 MFSNIGIPGLILIFVIALIIFGPSKLPEIGRAAGRTLLEFKSATKSLV-------SGDEKEEKSAELTA 62 (78)
T ss_dssp CCSSSCHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHHHHHHH-------HCCC----------
T ss_pred CCCCCCHHHHHHHHHHHhheeCccHhHHHHHHHHHHHHHHHHHHHHhH-------hhhhHHhhHHHHHH
Confidence 489999999999999999999999999999999999999999987544 44444444444433
No 2
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=23.39 E-value=51 Score=24.28 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=25.6
Q ss_pred HHhhhhheeC---CccHHHHHHHHHHHHHHHhHHHHH
Q 023111 133 IGVVALLVFG---PKGLAEVARNLGKTLRAFQPTIRE 166 (287)
Q Consensus 133 IlVVALLVfG---PkKLPelaRtlGK~IR~fR~~~~e 166 (287)
++.=+|..|+ |+|.-.+++.+||...++++-.+.
T Consensus 18 ~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~ 54 (72)
T 2cqq_A 18 QLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQ 54 (72)
T ss_dssp HHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 3445666787 789999999999888888766543
No 3
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=19.67 E-value=24 Score=31.50 Aligned_cols=40 Identities=8% Similarity=0.145 Sum_probs=31.2
Q ss_pred cccceeccccCCChhHHHHHHh-h------hhheeCCccHHHHHHHH
Q 023111 114 KRGVFYASLFGVGAPEALVIGV-V------ALLVFGPKGLAEVARNL 153 (287)
Q Consensus 114 ~~~~~~~~MFgIG~~ELLVIlV-V------ALLVfGPkKLPelaRtl 153 (287)
.+.++|..|+|+...+.+=-+- . .|||+|.+|.|.-+-.+
T Consensus 74 gG~VVHLTMYG~~i~dvi~eIr~~~~~~~~iLVVVGaeKVP~evYel 120 (201)
T 2yy8_A 74 TGVKVHLTMYGLHVDDVIEELKEKLKKGEDFMIIVGAEKVPREVYEL 120 (201)
T ss_dssp CSEEEEEEEEEEEHHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHH
T ss_pred CCEEEEEecCCCchHHHHHHHHhhcccCCCEEEEECCCcCCHHHHhh
Confidence 6899999999999988754433 1 68999999999655433
No 4
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=17.31 E-value=1.1e+02 Score=22.56 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=30.7
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHH
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR 165 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~ 165 (287)
-+|++..|+.++.++. -||-..-++++.+|-.-..+.+.++
T Consensus 32 ~~~l~~~~~~iL~~l~---~~~~~~~ela~~l~~s~~tvs~~l~ 72 (146)
T 2gxg_A 32 ELNLSYLDFLVLRATS---DGPKTMAYLANRYFVTQSAITASVD 72 (146)
T ss_dssp TTTCCHHHHHHHHHHT---TSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHh---cCCcCHHHHHHHhCCCchhHHHHHH
Confidence 3688999998888776 7888899999888765555554443
No 5
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=16.68 E-value=47 Score=24.99 Aligned_cols=18 Identities=6% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 023111 150 ARNLGKTLRAFQPTIREL 167 (287)
Q Consensus 150 aRtlGK~IR~fR~~~~el 167 (287)
.|.+.+-++++.+.++++
T Consensus 80 ~~~i~~pl~~l~~~~~~i 97 (163)
T 2f95_B 80 GGDTAASLSTLAAKASRM 97 (163)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444445544444433
No 6
>1gp7_A Phospholipase A2; snake venom, KING cobra, cardiotoxic activity, myotoxic activity, pancreatic loop, hydrolase, lipid degradation, calcium; 2.6A {Ophiophagus hannah} SCOP: a.133.1.2
Probab=15.95 E-value=44 Score=27.90 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=2.4
Q ss_pred hhHHHHHHhhhhheeCCccHHHHHHHHHHH
Q 023111 127 APEALVIGVVALLVFGPKGLAEVARNLGKT 156 (287)
Q Consensus 127 ~~ELLVIlVVALLVfGPkKLPelaRtlGK~ 156 (287)
+.+|||+++|.+.+||...+|..-|.+-++
T Consensus 3 ~~~ll~~~~v~v~ll~~~~~~~~~~~l~qf 32 (151)
T 1gp7_A 3 PAHLLVLSAVCVSLLGASSIPPQPLHLIQF 32 (151)
T ss_dssp -------------------------CHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhcCCCcccHHHH
Confidence 567899999999999988888776655443
No 7
>3vjz_A DMP19, putative uncharacterized protein; helix bundle, DNA mimic, gene regulation; 1.80A {Neisseria meningitidis}
Probab=15.69 E-value=1.8e+02 Score=25.16 Aligned_cols=41 Identities=17% Similarity=0.078 Sum_probs=31.6
Q ss_pred ChhHHHHH--HhhhhheeCCccHHHHHHHHHHHHHHHhHHHHH
Q 023111 126 GAPEALVI--GVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (287)
Q Consensus 126 G~~ELLVI--lVVALLVfGPkKLPelaRtlGK~IR~fR~~~~e 166 (287)
|..+.++- +.-+|=-+|-+++|++++..-+++.+-+..+..
T Consensus 71 GyG~~if~Np~akalr~wG~~~l~kli~kA~klY~~~~~~ie~ 113 (166)
T 3vjz_A 71 GYGEYIFRNPLADSLRRWKIKAVPKVLDKAKALYEQHGKTIET 113 (166)
T ss_dssp SCHHHHHTSSHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHhChHHHHHHHhCchhHHHHHHHHHHHHHHhhhHHHH
Confidence 33444443 466888899999999999999999988876653
No 8
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=11.62 E-value=45 Score=29.31 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=25.8
Q ss_pred cccceeccccCCChhHHHHHHh---hhhheeCCccHHHHHH
Q 023111 114 KRGVFYASLFGVGAPEALVIGV---VALLVFGPKGLAEVAR 151 (287)
Q Consensus 114 ~~~~~~~~MFgIG~~ELLVIlV---VALLVfGPkKLPelaR 151 (287)
.+.++|..|+|+...+.+=-+- =.|||+|.+|.|.-+-
T Consensus 75 ~G~VVHLTMYG~~i~dvi~~Ir~~~~iLvVVGaeKVP~evY 115 (178)
T 2o3a_A 75 DGLKVHLTMYGIPLPQKLEEIKRADKVLVVVGAEKVPPEVY 115 (178)
T ss_dssp CSEEEEEEEEEEEHHHHHHHHHTCSEEEEEEC----CTTHH
T ss_pred CCEEEEEecCCCchHHHHHHhhcCCCEEEEECCCcCCHHHH
Confidence 6899999999999887654332 2689999999996443
No 9
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=11.51 E-value=4.5e+02 Score=19.00 Aligned_cols=33 Identities=6% Similarity=0.131 Sum_probs=26.8
Q ss_pred cccCCChhHHHHHHhhhhheeCCccHHHHHHHHHH
Q 023111 121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGK 155 (287)
Q Consensus 121 ~MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK 155 (287)
.|.|++..|+.|+.++.- -||-..-++++.++.
T Consensus 4 ~~~~lt~~~~~vL~~l~~--~~~~t~~ela~~l~~ 36 (123)
T 1okr_A 4 KTYEISSAEWEVMNIIWM--KKYASANNIIEEIQM 36 (123)
T ss_dssp CCCCCCHHHHHHHHHHHH--HSSEEHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHh--CCCcCHHHHHHHHhc
Confidence 367999999988877764 688888899888874
No 10
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=10.81 E-value=2.8e+02 Score=20.41 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=31.0
Q ss_pred cCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHH
Q 023111 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR 165 (287)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~ 165 (287)
+|++..|+.++.+|.-- ||-..-++++.+|-.-..+-+.++
T Consensus 33 ~~lt~~~~~iL~~l~~~--~~~t~~eLa~~l~~~~~~vs~~l~ 73 (143)
T 3oop_A 33 YDVTPEQWSVLEGIEAN--EPISQKEIALWTKKDTPTVNRIVD 73 (143)
T ss_dssp SSSCHHHHHHHHHHHHH--SSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc--CCcCHHHHHHHHCCCHhhHHHHHH
Confidence 68999999888877654 888999999988766555555444
Done!