Query 023111
Match_columns 287
No_of_seqs 227 out of 1261
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 16:33:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023111.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023111hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rp3a1 a.4.13.1 (A:87-163) Si 33.8 13 0.00094 25.1 2.7 33 160-192 5-37 (77)
2 d1l0oc_ a.4.13.2 (C:) SigmaF { 26.4 21 0.0015 23.3 2.7 21 172-192 22-42 (57)
3 d2pila_ d.24.1.1 (A:) Pilin Gc 24.8 71 0.0052 21.8 5.6 29 126-155 2-30 (158)
4 d2o3aa1 c.116.1.8 (A:1-167) Un 10.9 22 0.0016 29.0 -0.5 38 113-150 72-112 (167)
5 d1zj8a4 d.134.1.1 (A:162-326) 9.2 1.9E+02 0.014 21.8 4.8 24 137-160 96-119 (165)
6 d1ku2a1 a.4.13.1 (A:273-332) S 9.2 84 0.0061 20.6 2.2 20 172-191 19-38 (60)
7 d1lnwa_ a.4.5.28 (A:) MexR rep 8.1 1.7E+02 0.012 20.7 3.7 42 122-165 31-72 (141)
8 d2axti1 f.23.37.1 (I:1-35) Pho 7.4 47 0.0035 20.7 0.2 13 130-142 10-22 (35)
9 d2a61a1 a.4.5.28 (A:5-143) Tra 7.2 2E+02 0.015 20.0 3.8 42 123-166 26-67 (139)
10 d1twfk_ d.74.3.2 (K:) RPB11 {B 6.9 2.3E+02 0.017 20.3 4.1 16 171-186 98-113 (114)
No 1
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=33.82 E-value=13 Score=25.14 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=20.0
Q ss_pred HhHHHHHHhhhHHHHHHHHHhhcCcccchhhhc
Q 023111 160 FQPTIRELQDVSREFKSTLEREIGLDDISTSTQ 192 (287)
Q Consensus 160 fR~~~~elqd~s~e~KsElerEieleELrk~lq 192 (287)
+|+.++.+++....+.++++++...+|+.+.+.
T Consensus 5 ~r~~~~ki~~a~~~L~~~lGR~Pt~~EiA~~lg 37 (77)
T d1rp3a1 5 VREKERRIKEVVEKLKEKLGREPTDEEVAKELG 37 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCCCHHHHHHHHC
Confidence 344444444555667777777777777766543
No 2
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=26.40 E-value=21 Score=23.31 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=15.1
Q ss_pred HHHHHHHHhhcCcccchhhhc
Q 023111 172 REFKSTLEREIGLDDISTSTQ 192 (287)
Q Consensus 172 ~e~KsElerEieleELrk~lq 192 (287)
+++.++++++...+|+.+.+.
T Consensus 22 ~~l~q~lgRePT~~EiA~~l~ 42 (57)
T d1l0oc_ 22 DELSKTRGRAPTVTEIADHLG 42 (57)
T ss_dssp HHHHHHHTSCCBHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHC
Confidence 456677888888888876654
No 3
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=24.80 E-value=71 Score=21.82 Aligned_cols=29 Identities=7% Similarity=0.068 Sum_probs=17.6
Q ss_pred ChhHHHHHHhhhhheeCCccHHHHHHHHHH
Q 023111 126 GAPEALVIGVVALLVFGPKGLAEVARNLGK 155 (287)
Q Consensus 126 G~~ELLVIlVVALLVfGPkKLPelaRtlGK 155 (287)
..-||||+++|+-|+-+ =-+|.+.+.+-+
T Consensus 2 TLIELlVViaIIgILaa-ia~P~~~~~~~~ 30 (158)
T d2pila_ 2 TLIELMIVIAIVGILAA-VALPAYQDYTAR 30 (158)
T ss_dssp CHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 45688887776544433 127877765544
No 4
>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.85 E-value=22 Score=28.98 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=25.2
Q ss_pred ccccceeccccCCChhHHHHHHhh---hhheeCCccHHHHH
Q 023111 113 CKRGVFYASLFGVGAPEALVIGVV---ALLVFGPKGLAEVA 150 (287)
Q Consensus 113 ~~~~~~~~~MFgIG~~ELLVIlVV---ALLVfGPkKLPela 150 (287)
..+.++|..|+|+.+.+.+==+=- .|||+|.+|.|.=+
T Consensus 72 ~~G~vVHLTMYG~~~~~~~~~Ir~~~~ilvVVGaeKVP~ev 112 (167)
T d2o3aa1 72 FDGLKVHLTMYGIPLPQKLEEIKRADKVLVVVGAEKVPPEV 112 (167)
T ss_dssp CCSEEEEEEEEEEEHHHHHHHHHTCSEEEEEEC----CTTH
T ss_pred cCCEEEEeecCCCchHHHhhhcccCCCEEEEECCccCCHHH
Confidence 368999999999999885433211 68999999999543
No 5
>d1zj8a4 d.134.1.1 (A:162-326) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.25 E-value=1.9e+02 Score=21.77 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=20.5
Q ss_pred hhheeCCccHHHHHHHHHHHHHHH
Q 023111 137 ALLVFGPKGLAEVARNLGKTLRAF 160 (287)
Q Consensus 137 ALLVfGPkKLPelaRtlGK~IR~f 160 (287)
+..++-+++++.+++.+-+.++.+
T Consensus 96 l~~~v~~e~v~~~v~ai~~~y~~~ 119 (165)
T d1zj8a4 96 VGAWVPLGEVPEVWAAVTSVFRDY 119 (165)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHHHHh
Confidence 345788999999999999999865
No 6
>d1ku2a1 a.4.13.1 (A:273-332) Sigma factor SigA {Thermus aquaticus [TaxId: 271]}
Probab=9.20 E-value=84 Score=20.59 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=13.4
Q ss_pred HHHHHHHHhhcCcccchhhh
Q 023111 172 REFKSTLEREIGLDDISTST 191 (287)
Q Consensus 172 ~e~KsElerEieleELrk~l 191 (287)
.++.++++++...+|+.+.+
T Consensus 19 ~~l~qe~gRePt~eEiA~~l 38 (60)
T d1ku2a1 19 RQLQQELGREPSYEEIAEAM 38 (60)
T ss_dssp HHHHHHHTSCCCHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHH
Confidence 35566777777777776655
No 7
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.06 E-value=1.7e+02 Score=20.69 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=30.6
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHH
Q 023111 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR 165 (287)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~ 165 (287)
=+||++.|+.++.+|. -.++-..-++++.++..-..+.+.++
T Consensus 31 ~~~lt~~q~~vL~~l~--~~~~~t~~~la~~l~~~~~~vsr~l~ 72 (141)
T d1lnwa_ 31 RLDLTPPDVHVLKLID--EQRGLNLQDLGRQMCRDKALITRKIR 72 (141)
T ss_dssp TCCCCHHHHHHHHHHH--SSTTCBHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH--HCCCCCHHHHHHHHCccHhHHHHHHH
Confidence 3689999999998886 36666888888877766555555544
No 8
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.40 E-value=47 Score=20.66 Aligned_cols=13 Identities=46% Similarity=0.613 Sum_probs=9.6
Q ss_pred HHHHHhhhhheeC
Q 023111 130 ALVIGVVALLVFG 142 (287)
Q Consensus 130 LLVIlVVALLVfG 142 (287)
..|++.|.|.+||
T Consensus 10 ~vV~fFv~lFiFG 22 (35)
T d2axti1 10 IVVTFFVLLFVFG 22 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 4567777888887
No 9
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=7.22 E-value=2e+02 Score=20.03 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=31.9
Q ss_pred cCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHH
Q 023111 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (287)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~e 166 (287)
+|++..++.++..|.- -||-..-++++.+|-.-..+-+.++.
T Consensus 26 ~glt~~q~~iL~~i~~--~~~~t~~~la~~l~i~~~tvs~~l~~ 67 (139)
T d2a61a1 26 FGITPAQFDILQKIYF--EGPKRPGELSVLLGVAKSTVTGLVKR 67 (139)
T ss_dssp HTCCHHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH--cCCCCHHHHHHHhCCCcccchHHHHH
Confidence 4899999999988864 68888889998887666555555443
No 10
>d1twfk_ d.74.3.2 (K:) RPB11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.94 E-value=2.3e+02 Score=20.26 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhcCccc
Q 023111 171 SREFKSTLEREIGLDD 186 (287)
Q Consensus 171 s~e~KsElerEieleE 186 (287)
.+.+++++++|.++..
T Consensus 98 ~~~l~~~f~~e~~~~~ 113 (114)
T d1twfk_ 98 LGALKTNFETEWNLQT 113 (114)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhhhcc
Confidence 3455666666666554
Done!