BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023112
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 317 bits (813), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 152/260 (58%), Positives = 186/260 (71%), Gaps = 6/260 (2%)
Query: 28 ATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSA 87
F ++ TW+ H++ GG IQL LD+ +G GF SK YLFG SM++KLVPGDSA
Sbjct: 15 VAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSA 74
Query: 88 GTVTAFYMNS-NTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAAD 146
GTVTAFY++S N+E+ DE+DFEFLGNRTGQPY +QTN++ GKGDREQR+ LWFDP +
Sbjct: 75 GTVTAFYLSSQNSEH--DEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKE 132
Query: 147 YHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLE 204
+H Y++LWN + IVF VDDVPIRV+KN FP NQPM +YS+LW ADDWATRGGLE
Sbjct: 133 FHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLE 192
Query: 205 KIDWSKAPFYAYYRDFDIEGCPVPGPAN-CASNPGNWWEANNYQALTAMEARRYRWVRLN 263
K DWSKAPF A YR F I+GC A CA+ WW+ +Q L A + RR WVR
Sbjct: 193 KTDWSKAPFIASYRSFHIDGCEASVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWVRQK 252
Query: 264 HMIYDYCTDKSRYPVPPPEC 283
+ IY+YCTD+SRYP PPEC
Sbjct: 253 YTIYNYCTDRSRYPSMPPEC 272
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 145/256 (56%), Gaps = 10/256 (3%)
Query: 30 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGT 89
F + + W H R +G ++ + LD SG GF S +Y G IKL G +AG
Sbjct: 20 FDQGYTNLWGPQHQRVDQG--SLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 77
Query: 90 VTAFYMNSNTE--NVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADY 147
+T+FY+++N + DE+D EFLG G+PYT+QTN++ G GDRE R++LWFDP DY
Sbjct: 78 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQDY 137
Query: 148 HLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKID 207
H Y I W I+F+VDDVPIR Y A FP+ +P+ VY ++W+A WAT G K D
Sbjct: 138 HNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL-RPLWVYGSVWDASSWATENGKYKAD 196
Query: 208 WSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQALTAMEARRYRWVRLNHMIY 267
+ PF Y DF + C V ++C NP + + Y L+ + WV+ N+M+Y
Sbjct: 197 YRYQPFVGKYEDFKLGSCTVEAASSC--NPAS---VSPYGQLSQQQVAAMEWVQKNYMVY 251
Query: 268 DYCTDKSRYPVPPPEC 283
+YC D +R PEC
Sbjct: 252 NYCDDPTRDHTLTPEC 267
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 145/256 (56%), Gaps = 10/256 (3%)
Query: 30 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGT 89
F + + W H R +G ++ + LD SG GF S +Y G IKL G +AG
Sbjct: 43 FDQGYTNLWGPQHQRVDQG--SLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 100
Query: 90 VTAFYMNSNTE--NVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADY 147
+T+FY+++N + DE+D EFLG G+PYT+QTN++ G GDRE R++LWFDP DY
Sbjct: 101 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQDY 160
Query: 148 HLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKID 207
H Y I W I+F+VDDVPIR Y A FP+ +P+ VY ++W+A WAT G K D
Sbjct: 161 HNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL-RPLWVYGSVWDASSWATENGKYKAD 219
Query: 208 WSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQALTAMEARRYRWVRLNHMIY 267
+ PF Y DF + C V ++C NP + + Y L+ + WV+ N+M+Y
Sbjct: 220 YRYQPFVGKYEDFKLGSCTVEAASSC--NPAS---VSPYGQLSQQQVAAMEWVQKNYMVY 274
Query: 268 DYCTDKSRYPVPPPEC 283
+YC D +R PEC
Sbjct: 275 NYCDDPTRDHTLTPEC 290
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 194 bits (492), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 104/261 (39%), Positives = 145/261 (55%), Gaps = 15/261 (5%)
Query: 30 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGT 89
F + + W H R +G ++ + LD SG GF S +Y G IKL G +AG
Sbjct: 19 FDQGYTNLWGPQHQRVDQG--SLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 76
Query: 90 VTAFYMNSNTE--NVRDELDFEFLGNRTGQPYTVQTNIYANGKGD-----REQRVNLWFD 142
+T+FY+++N + DE+D EFLG G+PYT+QTN++ G GD RE R++LWFD
Sbjct: 77 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHLWFD 136
Query: 143 PAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGG 202
P DYH Y I W I+F+VDDVPIR Y A FP+ +PM VY ++W+A WAT G
Sbjct: 137 PTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL-RPMWVYGSVWDASSWATENG 195
Query: 203 LEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQALTAMEARRYRWVRL 262
K D+ PF Y DF + C V ++C NP + + Y L+ + WV+
Sbjct: 196 KYKADYRYQPFVGKYEDFKLGSCTVEAASSC--NPAS---VSPYGQLSQQQVAAMEWVQK 250
Query: 263 NHMIYDYCTDKSRYPVPPPEC 283
N+M+Y+YC D +R PEC
Sbjct: 251 NYMVYNYCDDPTRDHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 145/261 (55%), Gaps = 15/261 (5%)
Query: 30 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGT 89
F + + W H R +G ++ + LD SG GF S +Y G IKL G +AG
Sbjct: 22 FDQGYTNLWGPQHQRVDQG--SLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 79
Query: 90 VTAFYMNSNTE--NVRDELDFEFLGNRTGQPYTVQTNIYANGKGD-----REQRVNLWFD 142
+T+FY+++N + DE+D EFLG G+PYT+QTN++ G GD RE R++LWFD
Sbjct: 80 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHLWFD 139
Query: 143 PAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGG 202
P DYH Y I W I+F+VDDVPIR Y A FP+ +P+ VY ++W+A WAT G
Sbjct: 140 PTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL-RPLWVYGSVWDASSWATENG 198
Query: 203 LEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQALTAMEARRYRWVRL 262
K D+ PF Y DF + C V ++C NP + + Y L+ + WV+
Sbjct: 199 KYKADYRYQPFVGKYEDFKLGSCTVEAASSC--NPAS---VSPYGQLSQQQVAAMEWVQK 253
Query: 263 NHMIYDYCTDKSRYPVPPPEC 283
N+M+Y+YC D +R PEC
Sbjct: 254 NYMVYNYCDDPTRDHTLTPEC 274
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 21/163 (12%)
Query: 61 GCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQP 118
G G S + Y +G + +K P + G V+AFY ++ + DE+D EFLG T +
Sbjct: 48 GGGNQSVQTYGYGLYEVNMK--PAKNVGIVSAFYTSTGPTDGTPWDEIDIEFLGKDTTK- 104
Query: 119 YTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAP 178
VQ N Y NG G+ E+ VNL FD A YH Y W + I +YVD K++
Sbjct: 105 --VQFNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG----QLKHTATTQ 158
Query: 179 FPMNQPMGVYSTLWEA---DDWATRGGLEKIDWSKAPFYAYYR 218
P P +Y +LW D+W G + P YA+Y
Sbjct: 159 IPQT-PGKIYMSLWAGAGVDEWL--GSYNGV----TPLYAHYN 194
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 83/194 (42%), Gaps = 25/194 (12%)
Query: 34 FKVTWSDAHLRQIEGGRAIQLVLDQNS----GCGFASKRQYLFGRVSMKIKLVPGDSAGT 89
F TW ++ G ++L L S CG Q +G ++ + P + G
Sbjct: 30 FNCTWRANNVSMTSLGE-MRLSLTSPSYNKFDCGENRSVQ-TYGYGLYEVNMKPAKNVGI 87
Query: 90 VTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADY 147
V++F+ + + DE+D EFLG T + VQ N Y NG G+ E+ VNL FD A Y
Sbjct: 88 VSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANSY 144
Query: 148 HLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA---DDWATRGGLE 204
H Y W + I +YVD K++ P P + LW D+W G
Sbjct: 145 HTYAFDWQPNSIKWYVDG----QLKHTATTQIPQ-TPGKIMMNLWNGAGVDEWL--GSYN 197
Query: 205 KIDWSKAPFYAYYR 218
+ P YA+Y
Sbjct: 198 GV----TPLYAHYN 207
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 71 LFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYAN 128
++G ++ + P + G V++F+ + + DE+D EFLG T + VQ N Y N
Sbjct: 67 IYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTN 123
Query: 129 GKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVY 188
G G E+ ++L FD + +H Y W +I +YVD V K++ A P + P +
Sbjct: 124 GVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIM 178
Query: 189 STLWEA---DDW 197
LW DDW
Sbjct: 179 MNLWNGTGVDDW 190
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 71 LFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYAN 128
++G ++ + P + G V++F+ + + DE+D EFLG T + VQ N Y N
Sbjct: 11 IYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTN 67
Query: 129 GKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVY 188
G G E+ ++L FD + +H Y W +I +YVD V K++ A P + P +
Sbjct: 68 GVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIM 122
Query: 189 STLWEA---DDW 197
LW DDW
Sbjct: 123 MNLWNGTGVDDW 134
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 71 LFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYAN 128
++G ++ + P + G V++F+ + + DE+D EFLG T + VQ N Y N
Sbjct: 11 IYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTN 67
Query: 129 GKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVY 188
G G E+ ++L FD + +H Y W +I +YVD V K++ A P + P +
Sbjct: 68 GVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIM 122
Query: 189 STLWEA---DDW 197
LW DDW
Sbjct: 123 MNLWNGTGVDDW 134
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 71 LFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYAN 128
++G ++ + P + G V++F+ + + DE+D EFLG T + VQ N Y N
Sbjct: 69 IYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTN 125
Query: 129 GKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVY 188
G G E+ ++L FD + +H Y W +I +YVD V K++ A P + P +
Sbjct: 126 GVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIM 180
Query: 189 STLWEA---DDW 197
LW DDW
Sbjct: 181 MNLWNGTGVDDW 192
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 71 LFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYAN 128
++G ++ + P + G V++F+ + + DE+D EFLG T + VQ N Y N
Sbjct: 11 IYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTN 67
Query: 129 GKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVY 188
G G E+ ++L FD + +H Y W +I +YVD V K++ A P + P +
Sbjct: 68 GVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIM 122
Query: 189 STLWEA---DDW 197
LW DDW
Sbjct: 123 MNLWNGTGVDDW 134
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 20/161 (12%)
Query: 62 CGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPY 119
CG Q +G ++++ P + G V++F+ + + DE+D EFLG T +
Sbjct: 85 CGENRSVQ-TYGYGLYEVRMKPAKNTGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK-- 141
Query: 120 TVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPF 179
VQ N Y NG G+ E+ V+L FD A YH Y W + I +YVD K++
Sbjct: 142 -VQFNYYTNGAGNHEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDG----QLKHTATNQI 196
Query: 180 PMNQPMGVYSTLWEA---DDWATRGGLEKIDWSKAPFYAYY 217
P P + LW D+W G ++ P YA+Y
Sbjct: 197 PT-TPGKIMMNLWNGTGVDEWL--GSYNGVN----PLYAHY 230
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 71 LFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYAN 128
++G ++ + P + G V++F+ + + D++D +FLG T + VQ N Y N
Sbjct: 69 IYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDQIDIQFLGKDTTK---VQFNYYTN 125
Query: 129 GKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVY 188
G G E+ ++L FD + +H Y W +I +YVD V K++ A P + P +
Sbjct: 126 GVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIM 180
Query: 189 STLWEA---DDW 197
LW DDW
Sbjct: 181 MNLWNGTGVDDW 192
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 104 DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYV 163
DE+D EFLG T + VQ N Y NG G E+ ++L FD + +H Y W +I +YV
Sbjct: 21 DEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYV 77
Query: 164 DDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA---DDW 197
D V K++ A P + P + LW DDW
Sbjct: 78 DG----VLKHTATANIP-STPGKIMMNLWNGTGVDDW 109
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 34 FKVTWSDAHLRQIEGGRAIQLVLDQNSG----CGFASKRQYLFGRVSMKIKLVPGDSAGT 89
F W ++ +G + + D S G + + FG ++++ P + G
Sbjct: 48 FNCIWRAYNIELKDGILNLSITDDMPSSSKPYAGAEYRTRDKFGYGLYQVRMKPAKNPGI 107
Query: 90 VTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADY 147
V++F+ + + DE+D EFLG T + VQ N Y N G+ E +L FD + D+
Sbjct: 108 VSSFFTYTGPVHGTPWDEIDIEFLGKDTTK---VQFNYYTNSAGNHEYIYDLRFDASEDF 164
Query: 148 HLYTILWNHHHIVFYVD 164
H+Y W ++I + VD
Sbjct: 165 HIYAFNWQPNYIAWLVD 181
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 131 GDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYST 190
G E+ ++L FD + +H Y W +I +YVD V K++ A P + P +
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIMMN 56
Query: 191 LWEA---DDW 197
LW DDW
Sbjct: 57 LWNGTGVDDW 66
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 71 LFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYAN 128
++G ++ + P + G V++F+ + + DE+D EFLG T + VQ N Y N
Sbjct: 157 IYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTN 213
Query: 129 G 129
G
Sbjct: 214 G 214
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 26/133 (19%)
Query: 53 QLVLDQNSGCG-FASKRQYLFGRVSM--------KIKLVPGDSAGTVTAFYM-NSNTENV 102
+++ D N G + S R G+V +IKL G G AF+M SN V
Sbjct: 73 EIITDPNEGTFLYTSSRLKTEGKVEFSPPVVVEARIKLPKG--KGLWPAFWMLGSNIREV 130
Query: 103 R----DELDF-EFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAA------DYHLYT 151
E+D EFLG+ +P T+ ++ G + + P D+H++
Sbjct: 131 GWPNCGEIDIMEFLGH---EPRTIHGTVHGPGYSGSKGITRAYTLPEGVPDFTEDFHVFG 187
Query: 152 ILWNHHHIVFYVD 164
I+W I +YVD
Sbjct: 188 IVWYPDKIKWYVD 200
>pdb|1UPS|A Chain A, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
pdb|1UPS|B Chain B, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
Length = 420
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 142 DPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYS 189
DP ++YH+Y + W + FY D+ +V G + M + +Y+
Sbjct: 209 DPTSEYHIYAMEWTPTALKFYYDNELFKVI--YGSPDYEMGTILNIYT 254
>pdb|3W2Z|A Chain A, Crystal Structure Of The Cyanobacterial Protein
Length = 198
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 33 DFKVTWSDAHLRQIEGGR 50
D K W D HL++ +GGR
Sbjct: 85 DIKTVWEDTHLQETQGGR 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,668,612
Number of Sequences: 62578
Number of extensions: 428872
Number of successful extensions: 827
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 780
Number of HSP's gapped (non-prelim): 22
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)