Query 023112
Match_columns 287
No_of_seqs 317 out of 1695
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:31:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 1.3E-84 2.7E-89 598.0 34.5 278 8-286 5-289 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 1.5E-83 3.3E-88 586.7 33.3 256 27-283 3-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 8.3E-44 1.8E-48 315.0 25.3 173 37-224 13-201 (203)
4 cd02175 GH16_lichenase lichena 100.0 2.1E-38 4.6E-43 281.7 25.6 173 35-223 26-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 4.5E-35 9.7E-40 253.2 20.2 172 32-221 3-185 (185)
6 cd02178 GH16_beta_agarase Beta 100.0 4.7E-34 1E-38 261.0 22.8 176 40-223 57-257 (258)
7 cd00413 Glyco_hydrolase_16 gly 100.0 4.4E-33 9.6E-38 245.0 24.4 171 35-222 24-209 (210)
8 cd08023 GH16_laminarinase_like 100.0 1.3E-32 2.8E-37 247.2 23.0 176 36-223 33-235 (235)
9 cd02177 GH16_kappa_carrageenas 100.0 3.8E-30 8.1E-35 236.5 22.2 170 40-223 43-268 (269)
10 cd02180 GH16_fungal_KRE6_gluca 100.0 2.6E-30 5.7E-35 240.3 19.5 180 37-223 37-294 (295)
11 cd02182 GH16_Strep_laminarinas 100.0 1E-29 2.2E-34 232.5 19.9 180 37-223 42-258 (259)
12 cd08024 GH16_CCF Coelomic cyto 100.0 1.3E-28 2.9E-33 232.5 20.1 136 60-198 100-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 100.0 2.2E-28 4.7E-33 230.2 17.4 133 60-195 97-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 8.5E-26 1.8E-30 214.6 19.7 175 36-219 74-261 (355)
15 PF06955 XET_C: Xyloglucan end 99.8 2E-21 4.4E-26 135.5 4.4 50 233-283 1-51 (51)
16 PF03935 SKN1: Beta-glucan syn 99.7 5.8E-16 1.3E-20 151.7 14.6 188 39-235 159-464 (504)
17 cd02181 GH16_fungal_Lam16A_glu 99.6 2.9E-14 6.4E-19 131.9 15.5 146 47-198 47-251 (293)
18 PF13385 Laminin_G_3: Concanav 96.1 0.45 9.7E-06 38.0 14.9 66 143-224 83-148 (157)
19 smart00560 LamGL LamG-like jel 90.0 9.1 0.0002 31.0 14.3 69 143-226 59-129 (133)
20 PF06439 DUF1080: Domain of Un 89.2 3.7 8.1E-05 34.6 9.5 105 59-174 41-156 (185)
21 smart00159 PTX Pentraxin / C-r 88.1 5.8 0.00012 35.0 10.1 71 143-222 88-160 (206)
22 PF09264 Sial-lect-inser: Vibr 87.5 1.1 2.4E-05 39.4 5.0 28 145-172 92-121 (198)
23 smart00210 TSPN Thrombospondin 86.3 15 0.00034 31.6 11.7 88 74-172 55-144 (184)
24 PF10287 DUF2401: Putative TOS 83.4 5.7 0.00012 36.2 7.7 78 74-157 102-207 (235)
25 cd00110 LamG Laminin G domain; 81.2 26 0.00056 28.0 15.6 84 72-170 21-105 (151)
26 cd00152 PTX Pentraxins are pla 78.8 44 0.00095 29.1 17.8 71 143-222 88-160 (201)
27 PF02973 Sialidase: Sialidase, 74.0 63 0.0014 28.5 12.5 131 70-226 32-176 (190)
28 PF14099 Polysacc_lyase: Polys 73.9 35 0.00077 29.9 9.9 76 137-222 144-224 (224)
29 PF02210 Laminin_G_2: Laminin 69.6 48 0.001 25.4 9.9 76 143-224 52-127 (128)
30 smart00282 LamG Laminin G doma 63.6 31 0.00067 27.3 6.7 28 144-171 61-88 (135)
31 PF13473 Cupredoxin_1: Cupredo 60.4 31 0.00066 26.7 5.9 24 37-61 31-54 (104)
32 PF09224 DUF1961: Domain of un 57.6 33 0.00073 30.8 6.2 59 145-222 159-218 (218)
33 PF00354 Pentaxin: Pentaxin fa 54.5 1.5E+02 0.0032 25.9 10.3 86 143-259 82-169 (195)
34 PRK02710 plastocyanin; Provisi 46.3 56 0.0012 26.1 5.5 19 37-56 43-61 (119)
35 PF11948 DUF3465: Protein of u 43.7 35 0.00077 28.4 3.9 47 15-63 11-57 (131)
36 KOG1834 Calsyntenin [Extracell 43.0 29 0.00064 36.3 3.9 52 144-198 441-492 (952)
37 cd00070 GLECT Galectin/galacto 42.7 83 0.0018 25.2 6.0 49 124-173 56-105 (127)
38 PF07172 GRP: Glycine rich pro 39.2 27 0.00059 27.3 2.4 11 10-20 11-21 (95)
39 PF13670 PepSY_2: Peptidase pr 37.1 1.3E+02 0.0027 22.3 5.8 22 45-66 61-82 (83)
40 PF06832 BiPBP_C: Penicillin-B 34.3 52 0.0011 24.6 3.3 35 158-192 44-78 (89)
41 PF08139 LPAM_1: Prokaryotic m 28.7 69 0.0015 19.0 2.4 18 4-21 7-24 (25)
42 KOG4352 Fas-mediated apoptosis 28.7 95 0.0021 26.6 4.2 37 133-170 91-127 (187)
43 PF04202 Mfp-3: Foot protein 3 28.6 57 0.0012 23.9 2.5 34 7-40 5-38 (71)
44 PF07691 PA14: PA14 domain; I 24.3 1.1E+02 0.0024 24.3 3.9 29 143-172 57-85 (145)
45 PF11191 DUF2782: Protein of u 22.0 3.8E+02 0.0082 20.9 6.4 41 52-99 39-79 (105)
46 PF00337 Gal-bind_lectin: Gala 21.7 2.2E+02 0.0047 22.7 5.1 49 124-173 61-110 (133)
47 cd06482 ACD_HspB10 Alpha cryst 20.8 1.6E+02 0.0036 22.4 3.9 47 38-84 19-65 (87)
48 cd06526 metazoan_ACD Alpha-cry 20.3 2.2E+02 0.0047 20.9 4.5 45 37-84 17-61 (83)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=1.3e-84 Score=597.99 Aligned_cols=278 Identities=48% Similarity=0.889 Sum_probs=251.5
Q ss_pred HHHHHHHHHHhhhhcccccCcccccCceeeecCCCeEEeeCCcEEEEEEcCCCcceEEEeeeEEeeEEEEEEEeeCCCCC
Q 023112 8 IALFVLLYCLVSCSCVLGRPATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSA 87 (287)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~f~~~f~~~w~~~~v~~~~~G~~l~L~l~~~sga~i~Sk~~~~yG~~eariKlp~g~s~ 87 (287)
.+||+++++++++.-..-....|.++|.++|+.+|+.+.++|+.|+|+||+.+|++|+||+.|+||+||||||+|+|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~sa 84 (291)
T PLN03161 5 KTLLVALFAALAAFDRSFVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSA 84 (291)
T ss_pred HHHHHHHHHHHHhcCCCcccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCC
Confidence 34455555444444444456789999999999999999888889999999999999999999999999999999998889
Q ss_pred ceEEEEEeecCCCCCCCeEEEEEeCCCCCCccEEEeeeecCCCCCcceEEecCCCCCCCcEEEEEEEcCCeEEEEECCee
Q 023112 88 GTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVP 167 (287)
Q Consensus 88 G~v~Afwl~~~~p~~~~EID~E~lG~~~g~p~~~~tn~~~~g~g~~e~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~ 167 (287)
|+||||||++.++. +||||||+||+++++|+++|||+|.+|.+++++++.++||++++||+|+|+|+|++|+|||||++
T Consensus 85 G~v~AFwl~s~~~~-~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~ 163 (291)
T PLN03161 85 GTVTAYYLSSTGSR-HDEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTP 163 (291)
T ss_pred CeEEEEEecCCCCC-CCeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEE
Confidence 99999999997666 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCC--CCCCCCCCeEEEEEeeeCCCccccCCCcccCCCCCCEEEEEcEEEEeeecCC-C--CCcCCCC-CCCcc
Q 023112 168 IRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVP-G--PANCASN-PGNWW 241 (287)
Q Consensus 168 vr~~~~~~~--~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~~c~~~-~--~~~c~~~-~~~~~ 241 (287)
||++++.+. .+||+++||+|++|||+|++|||+||++||||+++||+|.|++|+++||.++ + ...|... +..||
T Consensus 164 iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c~~~~~~~~~ 243 (291)
T PLN03161 164 IRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQCADPTPSNWW 243 (291)
T ss_pred EEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccccCCCCccccc
Confidence 999987554 6799878999999999999999999999999999999999999999999873 2 3479754 46799
Q ss_pred cccccccCCHHHHHHHHHHhhcCeEeecCCCCCCCCC-CCCCCcCC
Q 023112 242 EANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPV-PPPECLAG 286 (287)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~-~~~ec~~~ 286 (287)
+++.|++|+++|+++|+|||+||||||||+|++|||+ +||||.++
T Consensus 244 ~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~ 289 (291)
T PLN03161 244 TSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFKP 289 (291)
T ss_pred cCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCCC
Confidence 9999999999999999999999999999999999998 89999764
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=1.5e-83 Score=586.67 Aligned_cols=256 Identities=61% Similarity=1.182 Sum_probs=241.5
Q ss_pred CcccccCceeeecCCCeEEeeCCcEEEEEEcCCCcceEEEeeeEEeeEEEEEEEeeCCCCCceEEEEEeecCC-CCCCCe
Q 023112 27 PATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT-ENVRDE 105 (287)
Q Consensus 27 ~~~f~~~f~~~w~~~~v~~~~~G~~l~L~l~~~sga~i~Sk~~~~yG~~eariKlp~g~s~G~v~Afwl~~~~-p~~~~E 105 (287)
...|.++|.++|+++|+++.++|+.|+|+||+++||+|+||..|+||+||||||+|+|+++|+||||||++++ |. ++|
T Consensus 3 ~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~wp~-~~E 81 (263)
T cd02176 3 AASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQGPDN-HDE 81 (263)
T ss_pred cCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCCCCC-CCe
Confidence 4579999999999999999888899999999999999999999999999999999998889999999999998 77 999
Q ss_pred EEEEEeCCCCCCccEEEeeeecCCCCCcceEEecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEeCCCC--CCCCCCC
Q 023112 106 LDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQ 183 (287)
Q Consensus 106 ID~E~lG~~~g~p~~~~tn~~~~g~g~~e~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~--~~~P~~~ 183 (287)
||||++|+.+|+|+++|||+|.+|.+++++++.++||++++||+|+|+|+|++|+|||||++||++++.+. .+||+++
T Consensus 82 ID~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~ 161 (263)
T cd02176 82 IDFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQ 161 (263)
T ss_pred EEEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998654 6899779
Q ss_pred CeEEEEEeeeCCCccccCCCcccCCCCCCEEEEEcEEEEeeecC-CCCCcCCCCC-CCcccccccccCCHHHHHHHHHHh
Q 023112 184 PMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPV-PGPANCASNP-GNWWEANNYQALTAMEARRYRWVR 261 (287)
Q Consensus 184 Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~~c~~-~~~~~c~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 261 (287)
||+|++|||+||+|||+||++|+||+++||+|.|++|+|++|.+ +....|.... ..||+.+.+++|+++|+++|+|||
T Consensus 162 Pm~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 241 (263)
T cd02176 162 PMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSCTEDWWNGSTYQQLSANQQRAMEWVR 241 (263)
T ss_pred eEEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCCccccCCCccccccccccccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 4445675433 579999999999999999999999
Q ss_pred hcCeEeecCCCCCCCCCCCCCC
Q 023112 262 LNHMIYDYCTDKSRYPVPPPEC 283 (287)
Q Consensus 262 ~~~~~y~yc~d~~r~~~~~~ec 283 (287)
+||||||||+|++|||.+||||
T Consensus 242 ~~~~~y~yC~d~~r~~~~p~ec 263 (263)
T cd02176 242 RNYMVYDYCDDRKRYPVPPPEC 263 (263)
T ss_pred HCCEEEecCCCCCcCCCCcCCC
Confidence 9999999999999999999999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=8.3e-44 Score=315.05 Aligned_cols=173 Identities=28% Similarity=0.569 Sum_probs=152.2
Q ss_pred eecCCCeEEeeCCcEEEEEEcCC-CcceEEEeeeEEeeEEEEEEEeeCCCCCceEEEEEeecCCCCCCCeEEEEEeCCCC
Q 023112 37 TWSDAHLRQIEGGRAIQLVLDQN-SGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRT 115 (287)
Q Consensus 37 ~w~~~~v~~~~~G~~l~L~l~~~-sga~i~Sk~~~~yG~~eariKlp~g~s~G~v~Afwl~~~~p~~~~EID~E~lG~~~ 115 (287)
+...++|.+. ++.|+|+|++. +|++|+|++.|+||+||||||+|.+ +|+||||||++++ ++|||||++|++
T Consensus 13 ~~~~~~~~~~--~~~~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~~---~gEIDIE~~G~~- 84 (203)
T cd02183 13 TVTSGTVDYD--DDGASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSDD---LDEIDWEWVGGD- 84 (203)
T ss_pred EecCCcEeEC--CCeEEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECCC---CCEEEEEecCCC-
Confidence 3457778774 33599999987 7999999999999999999999998 8999999999986 899999999964
Q ss_pred CCccEEEeeeecCCCC---CcceEEecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEeCCC---CCCCCCCCCeEEEE
Q 023112 116 GQPYTVQTNIYANGKG---DREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG---RAPFPMNQPMGVYS 189 (287)
Q Consensus 116 g~p~~~~tn~~~~g~g---~~e~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~---~~~~P~~~Pm~l~l 189 (287)
+..+|+|++.++.. ++++.+.++++++++||+|+|+|+|+.|+|||||+++|++++.+ ...|| ++||+|++
T Consensus 85 --~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p-~~P~~l~l 161 (203)
T cd02183 85 --LTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYP-QTPMRLQI 161 (203)
T ss_pred --CCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCC-CCCcEEEE
Confidence 56899999987654 45567778888889999999999999999999999999998643 26799 89999999
Q ss_pred EeeeCCC---------ccccCCCcccCCCCCCEEEEEcEEEEee
Q 023112 190 TLWEADD---------WATRGGLEKIDWSKAPFYAYYRDFDIEG 224 (287)
Q Consensus 190 nlw~gg~---------Wat~GG~~~~d~~~~Pf~a~~~~~~v~~ 224 (287)
|+|+||+ || ||+ +||+.+||+|.|++|+|.+
T Consensus 162 n~W~gg~~~~~~g~~~Wa--Gg~--~d~~~~P~~~~vd~v~v~~ 201 (203)
T cd02183 162 GIWAGGDPSNAPGTIEWA--GGE--TDYDKGPFTMYVKSVTVTD 201 (203)
T ss_pred EEecCCCccccCCcccCC--CCc--cCCCCCCEEEEEEEEEEEe
Confidence 9999985 99 775 9999999999999999865
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=2.1e-38 Score=281.67 Aligned_cols=173 Identities=30% Similarity=0.603 Sum_probs=148.7
Q ss_pred eeeecCCCeEEeeCCcEEEEEEcCC-------CcceEEEeeeEEeeEEEEEEEeeCCCCCceEEEEEeecCC---CCCCC
Q 023112 35 KVTWSDAHLRQIEGGRAIQLVLDQN-------SGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT---ENVRD 104 (287)
Q Consensus 35 ~~~w~~~~v~~~~~G~~l~L~l~~~-------sga~i~Sk~~~~yG~~eariKlp~g~s~G~v~Afwl~~~~---p~~~~ 104 (287)
.++|.++||.+. +| .|+|++.+. ++|+|.|+.+|+||+||||||+|.+ +|+||||||++.+ +. ++
T Consensus 26 ~~~~~~~nv~v~-~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~-~~ 100 (212)
T cd02175 26 NCTWSADNVEFS-DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDP-HD 100 (212)
T ss_pred eeeEccccEEEE-CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCC-CC
Confidence 367889999985 55 588888653 4899999999999999999999988 8999999999753 33 79
Q ss_pred eEEEEEeCCCCCCccEEEeeeecCCCCCcceEEecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEeCCCCCCCCCCCC
Q 023112 105 ELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQP 184 (287)
Q Consensus 105 EID~E~lG~~~g~p~~~~tn~~~~g~g~~e~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~P~~~P 184 (287)
|||||++|++. ..+++|+|.++.+.++..+.++++++++||+|+|+|+|++|+|||||+++++++..+ ..+| ++|
T Consensus 101 EIDiE~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~-~~~p-~~p 175 (212)
T cd02175 101 EIDIEFLGKDT---TKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD-PNIP-DTP 175 (212)
T ss_pred EEEEEEccCCC---CEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc-CCCC-CCC
Confidence 99999999763 468899998877777777788889999999999999999999999999999998643 4688 899
Q ss_pred eEEEEEeeeCC---CccccCCCcccCCCCCCEEEEEcEEEEe
Q 023112 185 MGVYSTLWEAD---DWATRGGLEKIDWSKAPFYAYYRDFDIE 223 (287)
Q Consensus 185 m~l~lnlw~gg---~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 223 (287)
|+|++|+|.|+ +|+ |. +|. ..|++|+||+|||.
T Consensus 176 ~~i~~n~w~~~~~~~W~---G~--~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 176 GKIMMNLWPGDGVDDWL---GP--FDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred cEEEEEEEcCCCCCCcC---Cc--CCC-CCCeEEEEEEEEEe
Confidence 99999999985 598 53 676 89999999999984
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=4.5e-35 Score=253.16 Aligned_cols=172 Identities=35% Similarity=0.647 Sum_probs=147.4
Q ss_pred cCceeeecCCCeEEeeCCcEEEEEEcC-----CCcceEEEeeeEEeeEEEEEEEeeCCCCCceEEEEEeecCC--CCCCC
Q 023112 32 EDFKVTWSDAHLRQIEGGRAIQLVLDQ-----NSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT--ENVRD 104 (287)
Q Consensus 32 ~~f~~~w~~~~v~~~~~G~~l~L~l~~-----~sga~i~Sk~~~~yG~~eariKlp~g~s~G~v~Afwl~~~~--p~~~~ 104 (287)
+.++++|+++||.+. +|+.|.|++++ .+||+|+|+..++||+||+|||++.+ +|+||||||.+.+ |. ++
T Consensus 3 ~~~~~~~~~~nv~~~-~g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~~~~-~~ 78 (185)
T PF00722_consen 3 DQYNCTWSPDNVTVE-DGGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADGWPD-GG 78 (185)
T ss_dssp CTEEEEETCCGEEEE-TTSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGSTTT-TE
T ss_pred CceEEeeCCCcEEEc-CCCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEecccccccccccc-hh
Confidence 568899999999995 55579999988 57999999999999999999999887 8999999997633 55 89
Q ss_pred eEEEEEeCCCCCCccEEEeeeecCCCCCc--ceEEecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEeCCCC--CCCC
Q 023112 105 ELDFEFLGNRTGQPYTVQTNIYANGKGDR--EQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFP 180 (287)
Q Consensus 105 EID~E~lG~~~g~p~~~~tn~~~~g~g~~--e~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~--~~~P 180 (287)
|||||++|++.. .+++|+|..+.+.. +..+.+..++.++||+|+|+|+|++|+|||||++++++..... .++|
T Consensus 79 EIDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P 155 (185)
T PF00722_consen 79 EIDIEFLGNDPT---QVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYP 155 (185)
T ss_dssp EEEEEEETTSTT---EEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSS
T ss_pred hhhhhhcccccc---ceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCc
Confidence 999999998643 59999999888765 5667778899999999999999999999999999999987643 3489
Q ss_pred CCCCeEEEEEeeeCCCccccCCCcccCCCCCCEEEEEcEEE
Q 023112 181 MNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFD 221 (287)
Q Consensus 181 ~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~ 221 (287)
+..||+|.+++|.|++|++..| .|+|||||
T Consensus 156 ~~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 156 FSTPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred ccceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 5589999999999998884444 67888876
No 6
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=4.7e-34 Score=260.96 Aligned_cols=176 Identities=20% Similarity=0.254 Sum_probs=134.0
Q ss_pred CCCeEEeeCCcEEEEEEcCC-----------CcceEEEeeeEEeeEEEEEEEeeCCCCCceEEEEEeecCC-CCCCCeEE
Q 023112 40 DAHLRQIEGGRAIQLVLDQN-----------SGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT-ENVRDELD 107 (287)
Q Consensus 40 ~~~v~~~~~G~~l~L~l~~~-----------sga~i~Sk~~~~yG~~eariKlp~g~s~G~v~Afwl~~~~-p~~~~EID 107 (287)
++|+.+ .+| .|.|+..+. ++|+|.||+.|+|||||||||+|.+ . .+|||||++.+ +. ++|||
T Consensus 57 ~~nv~v-~~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~--~-~~pAfW~~~~~~~~-~gEID 130 (258)
T cd02178 57 ADNVSV-EDG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL--P-MSSAFWLLSDTKDS-TTEID 130 (258)
T ss_pred cCCeEE-ECC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC--C-ccceEEEccCCCCC-CCcEE
Confidence 566666 466 588877543 4799999999999999999999976 4 57999999985 45 89999
Q ss_pred -EEEeCCCC--CCccEEEeeeecCCCC-----Cc---ceEEecCCCCCCCcEEEEEEEc-CCeEEEEECCeeEEEEeCCC
Q 023112 108 -FEFLGNRT--GQPYTVQTNIYANGKG-----DR---EQRVNLWFDPAADYHLYTILWN-HHHIVFYVDDVPIRVYKNSG 175 (287)
Q Consensus 108 -~E~lG~~~--g~p~~~~tn~~~~g~g-----~~---e~~~~l~~d~~~dfHtY~i~Wt-p~~I~fyVDG~~vr~~~~~~ 175 (287)
||++|++. ..+..+|+++|..+.+ .+ ........+.+++||+|+|+|+ |++|+|||||++++++++.+
T Consensus 131 I~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~ 210 (258)
T cd02178 131 ILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENSE 210 (258)
T ss_pred hhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCcc
Confidence 89999763 2245788876532221 11 2234455677899999999999 99999999999999998744
Q ss_pred C-CCCCCCCCeEEEEEeeeCCCccccCCCcccCCCCCCEEEEEcEEEEe
Q 023112 176 R-APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIE 223 (287)
Q Consensus 176 ~-~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 223 (287)
. ...||++||+|+||+++|| |+...+. ...-...|..|.||+|||.
T Consensus 211 ~~~~~~f~~p~~liln~avg~-w~g~~~~-~~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 211 ITDGTGFDQPMYIIIDTETYD-WRGEPTD-EELADDSKNTFYVDYVRVY 257 (258)
T ss_pred cCcCCcCCCCeEEEEEecccc-CCCCCCc-cccCCCCCCeEEEEEEEEe
Confidence 3 4578899999999999998 9821011 1222456999999999985
No 7
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=4.4e-33 Score=244.99 Aligned_cols=171 Identities=35% Similarity=0.584 Sum_probs=143.2
Q ss_pred eeeecCCCeEEeeCCcEEEEEEcCC------CcceEEE-eeeEEeeEEEEEEEeeCCCCCceEEEEEeecCC---CCCCC
Q 023112 35 KVTWSDAHLRQIEGGRAIQLVLDQN------SGCGFAS-KRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT---ENVRD 104 (287)
Q Consensus 35 ~~~w~~~~v~~~~~G~~l~L~l~~~------sga~i~S-k~~~~yG~~eariKlp~g~s~G~v~Afwl~~~~---p~~~~ 104 (287)
...|+++||.+.++| .|.|++.+. ++|+|.| ++.|+||+||+|||++.+ .|+|+||||++.+ |. .+
T Consensus 24 ~~~~~~~nv~~~~~G-~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~-~~ 99 (210)
T cd00413 24 NMTNSPNNVYVENDG-GLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPD-GG 99 (210)
T ss_pred eEEECccCEEEeCCC-eEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCC-CC
Confidence 357889999986546 588888643 5799999 999999999999999988 8999999999987 55 89
Q ss_pred eEEEEEeCCCCCCccEEEeeeecCCCC-----CcceEEecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEeCCCCCCC
Q 023112 105 ELDFEFLGNRTGQPYTVQTNIYANGKG-----DREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPF 179 (287)
Q Consensus 105 EID~E~lG~~~g~p~~~~tn~~~~g~g-----~~e~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~ 179 (287)
|||||++|++ +..+++++|..+.+ .......++++..++||+|+|+|+|+.|+|||||++++++.+ ..
T Consensus 100 EIDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~----~~ 172 (210)
T cd00413 100 EIDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITN----QV 172 (210)
T ss_pred eEEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECC----CC
Confidence 9999999976 44678888766543 233445566678999999999999999999999999999975 36
Q ss_pred CCCCCeEEEEEeeeCCCccccCCCcccCCCCCCEEEEEcEEEE
Q 023112 180 PMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDI 222 (287)
Q Consensus 180 P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v 222 (287)
| ++||+|+||+|.+++|+ +. .+....|..|.|++|||
T Consensus 173 p-~~p~~i~ln~~~~~~~~--~~---~~~~~~~~~~~Vd~vrv 209 (210)
T cd00413 173 P-DDPMNIILNLWSDGGWW--WG---GPPPGAPAYMEIDWVRV 209 (210)
T ss_pred C-CCCcEEEEEEEECCCCc--cc---CCCCCCCcEEEEEEEEE
Confidence 7 89999999999999988 22 34578899999999997
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=1.3e-32 Score=247.23 Aligned_cols=176 Identities=25% Similarity=0.422 Sum_probs=141.2
Q ss_pred eeecCCCeEEeeCCcEEEEEEcCC----------CcceEEE--eeeEEeeEEEEEEEeeCCCCCceEEEEEeecCC----
Q 023112 36 VTWSDAHLRQIEGGRAIQLVLDQN----------SGCGFAS--KRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT---- 99 (287)
Q Consensus 36 ~~w~~~~v~~~~~G~~l~L~l~~~----------sga~i~S--k~~~~yG~~eariKlp~g~s~G~v~Afwl~~~~---- 99 (287)
..+.++|+.+ .+| .|.|+..+. ++|+|.| ++.|+|||||||||+|.+ +|++|||||++.+
T Consensus 33 ~~~~~~nv~v-~~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~ 108 (235)
T cd08023 33 YTYRPENAYV-EDG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYV 108 (235)
T ss_pred EeCCCCCeEE-ECC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCC
Confidence 4567888887 466 588876532 4789999 889999999999999988 8999999999975
Q ss_pred --CCCCCeEE-EEEeCCCCCCccEEEeeeecCCCC----CcceEEecCC-CCCCCcEEEEEEEcCCeEEEEECCeeEEEE
Q 023112 100 --ENVRDELD-FEFLGNRTGQPYTVQTNIYANGKG----DREQRVNLWF-DPAADYHLYTILWNHHHIVFYVDDVPIRVY 171 (287)
Q Consensus 100 --p~~~~EID-~E~lG~~~g~p~~~~tn~~~~g~g----~~e~~~~l~~-d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~ 171 (287)
|. .+||| ||++|+. +..+++++|..+.. ..+..+.... +..++||+|+++|+|++|+|||||++++++
T Consensus 109 ~w~~-~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~ 184 (235)
T cd08023 109 GWPA-SGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTY 184 (235)
T ss_pred CCCC-CCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEE
Confidence 34 68999 7999986 44688888876643 2334455544 789999999999999999999999999999
Q ss_pred eCCCC---CCCCCCCCeEEEEEeeeCCCccccCCCcccCCCCCCEEEEEcEEEEe
Q 023112 172 KNSGR---APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIE 223 (287)
Q Consensus 172 ~~~~~---~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 223 (287)
++... ..+|+++||+|+||+++||+|+ |.. ......|..|.||+|||.
T Consensus 185 ~~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~~-~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 185 TNPNTDNGGQWPFDQPFYLILNLAVGGNWP---GPP-DDDTPFPATMEVDYVRVY 235 (235)
T ss_pred cccccCCcccCCCCCCcEEEEEEEEcCCCC---CCC-CCCCCCCCEEEEEEEEEC
Confidence 87542 2356689999999999999998 431 244577999999999983
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.97 E-value=3.8e-30 Score=236.50 Aligned_cols=170 Identities=22% Similarity=0.280 Sum_probs=127.7
Q ss_pred CCCeEEeeCCcEEEEEEcC-------------------CCcceEEEeeeEEeeEEEEEEEeeC-CCCCceEEEEEeecCC
Q 023112 40 DAHLRQIEGGRAIQLVLDQ-------------------NSGCGFASKRQYLFGRVSMKIKLVP-GDSAGTVTAFYMNSNT 99 (287)
Q Consensus 40 ~~~v~~~~~G~~l~L~l~~-------------------~sga~i~Sk~~~~yG~~eariKlp~-g~s~G~v~Afwl~~~~ 99 (287)
++|+.+ .+|. |.|+..+ +++|++.|+.+|+|||||||||+++ + +|+||||||+++.
T Consensus 43 ~~Nv~v-~dG~-L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVI-SNGI-LELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDI 118 (269)
T ss_pred ccceEE-eCCE-EEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccC
Confidence 466666 6774 7777654 2578999999999999999999865 6 8999999999851
Q ss_pred ---------CCCCCeEE-EEEeCCCC---CCc----cEEEeeeecCCCCC--c--------ceEEecCCCCCCCcEEEEE
Q 023112 100 ---------ENVRDELD-FEFLGNRT---GQP----YTVQTNIYANGKGD--R--------EQRVNLWFDPAADYHLYTI 152 (287)
Q Consensus 100 ---------p~~~~EID-~E~lG~~~---g~p----~~~~tn~~~~g~g~--~--------e~~~~l~~d~~~dfHtY~i 152 (287)
|. ++||| ||.+|... +++ ..+|++++.++.+. + ...+.+++|++++||+|+|
T Consensus 119 ~~~~~~~gwp~-~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v 197 (269)
T cd02177 119 DYSVANEGEVV-YSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGC 197 (269)
T ss_pred CCCcccCCCCC-CCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEE
Confidence 45 89999 88887541 222 24666555554431 1 1234567889999999999
Q ss_pred EEcCCeEEEEECCeeEEEEeCCCCCCCCCCCCeEEEEEeeeCC---------CccccCCCcccCCCCCCEEEEEcEEEEe
Q 023112 153 LWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEAD---------DWATRGGLEKIDWSKAPFYAYYRDFDIE 223 (287)
Q Consensus 153 ~Wtp~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg---------~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 223 (287)
+|+|++|+|||||++++++.+. +. +.||.+.+++-.+. .|+ |+. .+.+..|-.|+||+|||.
T Consensus 198 ~W~~~~i~~yvDg~~~~~~~~~----~w-~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~--~~~~~fP~~m~VDyVRv~ 268 (269)
T cd02177 198 NVNQDEIIWYVDGVEVGRKPNK----YW-HRPMNVTLSLGLRKPFVKFFDNKNNA--KAR--EKASDFPTSMYVDYVRVW 268 (269)
T ss_pred EEeCCEEEEEECCEEEEEEcCC----cc-ccccEEeeccccCcchhhhhccccCC--CCC--CccCcCCceEEEEEEEEe
Confidence 9999999999999999999752 43 78899888875432 355 443 456788999999999985
No 10
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.97 E-value=2.6e-30 Score=240.27 Aligned_cols=180 Identities=18% Similarity=0.192 Sum_probs=125.8
Q ss_pred eecCCCeEEeeCCcEEEEEEcC-------CCcceEEE--eeeEEeeEEEEEEEeeCC-CCCceEEEEEeecCC-------
Q 023112 37 TWSDAHLRQIEGGRAIQLVLDQ-------NSGCGFAS--KRQYLFGRVSMKIKLVPG-DSAGTVTAFYMNSNT------- 99 (287)
Q Consensus 37 ~w~~~~v~~~~~G~~l~L~l~~-------~sga~i~S--k~~~~yG~~eariKlp~g-~s~G~v~Afwl~~~~------- 99 (287)
.+.++|+.+ .+| .|.|+..+ +++|+|.| |+.|+|||||||||||.+ ...|+||||||+++.
T Consensus 37 ~Y~~~nv~v-~~G-~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~~ 114 (295)
T cd02180 37 WYDPDAVTT-ING-SLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYLA 114 (295)
T ss_pred EecCcCeEe-cCC-eEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeecccccccccccc
Confidence 455678776 567 47777754 36899999 788999999999999963 137999999999953
Q ss_pred ------CC-----CCCeEE-EEEeCCCCC-CccE---EE----------------eeeecC------C-CCCcce-EE--
Q 023112 100 ------EN-----VRDELD-FEFLGNRTG-QPYT---VQ----------------TNIYAN------G-KGDREQ-RV-- 137 (287)
Q Consensus 100 ------p~-----~~~EID-~E~lG~~~g-~p~~---~~----------------tn~~~~------g-~g~~e~-~~-- 137 (287)
|. ..+||| ||.+|.+.. .... +| ..+|.. . .++..+ ..
T Consensus 115 ~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 194 (295)
T cd02180 115 TTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAISC 194 (295)
T ss_pred cccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCcccccccc
Confidence 21 038999 999985431 1111 11 111210 0 011001 00
Q ss_pred --ecCC----CCCCCcEEEEEEEcC-----CeEEEEECCeeEEEEeCCCC--------CCCCCCCCeEEEEEeeeCCCcc
Q 023112 138 --NLWF----DPAADYHLYTILWNH-----HHIVFYVDDVPIRVYKNSGR--------APFPMNQPMGVYSTLWEADDWA 198 (287)
Q Consensus 138 --~l~~----d~~~dfHtY~i~Wtp-----~~I~fyVDG~~vr~~~~~~~--------~~~P~~~Pm~l~lnlw~gg~Wa 198 (287)
.++. ...++||+|+|+|+| ++|+|||||+++++++..+. ..+| ++||+|+||+++||+|+
T Consensus 195 ~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~-~~P~ylILNlAvGg~w~ 273 (295)
T cd02180 195 VTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIP-EEPMYIILNLGISSNFQ 273 (295)
T ss_pred ccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccC-CCCeEEEEEEEeccccC
Confidence 1111 136789999999999 89999999999999986421 2356 89999999999999998
Q ss_pred ccCCCcccCCCCCCEEEEEcEEEEe
Q 023112 199 TRGGLEKIDWSKAPFYAYYRDFDIE 223 (287)
Q Consensus 199 t~GG~~~~d~~~~Pf~a~~~~~~v~ 223 (287)
|. +.+-...|..|+||+|||.
T Consensus 274 ---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 274 ---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred ---CC-CcccCCCCCEEEEEEEEEE
Confidence 42 2345667999999999995
No 11
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.97 E-value=1e-29 Score=232.50 Aligned_cols=180 Identities=17% Similarity=0.132 Sum_probs=125.4
Q ss_pred eecCCCeEEeeCCcEEEEEEcC-----CCcceEEEeeeE--Ee----eEEEEEEEeeCCC---CCceEEEEEeecCC---
Q 023112 37 TWSDAHLRQIEGGRAIQLVLDQ-----NSGCGFASKRQY--LF----GRVSMKIKLVPGD---SAGTVTAFYMNSNT--- 99 (287)
Q Consensus 37 ~w~~~~v~~~~~G~~l~L~l~~-----~sga~i~Sk~~~--~y----G~~eariKlp~g~---s~G~v~Afwl~~~~--- 99 (287)
+++++|+.+..+| .|.|+..+ .++|+|.|+.++ .| |+||||||+|.+. ..|+||||||++.+
T Consensus 42 ~~~~~n~~v~~dG-~L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 42 TNSTANVQLSGNG-TLQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred cCCCcCEEEcCCC-eEEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccC
Confidence 4567888875467 47776653 357899997654 33 4899999999741 27999999999963
Q ss_pred -----CCCCCeEE-EEEeCCCCCCccEEEeeeecCCCC--CcceE-Ee-cCCCCCCCcEEEEEEEcC-----CeEEEEEC
Q 023112 100 -----ENVRDELD-FEFLGNRTGQPYTVQTNIYANGKG--DREQR-VN-LWFDPAADYHLYTILWNH-----HHIVFYVD 164 (287)
Q Consensus 100 -----p~~~~EID-~E~lG~~~g~p~~~~tn~~~~g~g--~~e~~-~~-l~~d~~~dfHtY~i~Wtp-----~~I~fyVD 164 (287)
|. .+||| ||..|.. +...++.++....+ .++.. .. ......++||+|+++|++ ++|+||||
T Consensus 121 ~~~~WP~-~GEIDImE~~~~~---~~~~~t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvD 196 (259)
T cd02182 121 NGTNWPA-CGELDIMENVNGL---STGYGTLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLD 196 (259)
T ss_pred CCCCCCc-cceeeeeeccCCC---CceEEEEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEEC
Confidence 55 68999 8999864 34444433322111 11111 10 011245899999999997 99999999
Q ss_pred CeeEEEEeCCCC-----CCCCCCCCeEEEEEeeeCCCccccCCCcccCCCCCCEEEEEcEEEEe
Q 023112 165 DVPIRVYKNSGR-----APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIE 223 (287)
Q Consensus 165 G~~vr~~~~~~~-----~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 223 (287)
|+++++++.... .+.|+++||+|+||+++||+|+ |......-...|..|.||+|||.
T Consensus 197 G~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~--~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 197 GVVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP--GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred CEEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC--CCCCcccccCCCceEEEEEEEEe
Confidence 999999976421 1234589999999999999998 32101112356899999999985
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.96 E-value=1.3e-28 Score=232.52 Aligned_cols=136 Identities=25% Similarity=0.337 Sum_probs=104.3
Q ss_pred CcceEEE--eeeEEeeEEEEEEEeeCCCCCceEEEEEeecCC------CCCCCeEE-EEEeCCCCCCc-------cEEEe
Q 023112 60 SGCGFAS--KRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT------ENVRDELD-FEFLGNRTGQP-------YTVQT 123 (287)
Q Consensus 60 sga~i~S--k~~~~yG~~eariKlp~g~s~G~v~Afwl~~~~------p~~~~EID-~E~lG~~~g~p-------~~~~t 123 (287)
++|+|.| |+.|+|||||||||||.| .|+||||||++.+ |. .+||| ||..|+....+ ..++.
T Consensus 100 ~Sgri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~-sGEIDImE~~Gn~~~~~~~~~~g~~~v~~ 176 (330)
T cd08024 100 MSARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPR-SGEIDIMESRGNRPLYDGGEAIGINSVGS 176 (330)
T ss_pred EEEEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCC-CCcEEEEEEeCCCcccccccccCcceEEE
Confidence 5788999 688999999999999999 8999999999975 56 79999 99999864221 13444
Q ss_pred eeecCCC-CC---cc---eEEecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEeCCC---------------------
Q 023112 124 NIYANGK-GD---RE---QRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--------------------- 175 (287)
Q Consensus 124 n~~~~g~-g~---~e---~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~--------------------- 175 (287)
.+|.... .. +. .......+.+++||+|+|+|+|++|+|||||+++++++...
T Consensus 177 tlH~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~ 256 (330)
T cd08024 177 TLHWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGG 256 (330)
T ss_pred EEEeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCccccc
Confidence 4443211 11 11 11122345678999999999999999999999999988520
Q ss_pred CCCCCCCCCeEEEEEeeeCCCcc
Q 023112 176 RAPFPMNQPMGVYSTLWEADDWA 198 (287)
Q Consensus 176 ~~~~P~~~Pm~l~lnlw~gg~Wa 198 (287)
....||++|+||+|||++||.|.
T Consensus 257 ~~~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 257 GKMAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CcCCCCCCCEEEEEEEEecCCCC
Confidence 03568999999999999999876
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.96 E-value=2.2e-28 Score=230.16 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=99.4
Q ss_pred CcceEEE--eeeEEeeEEEEEEEeeCCCCCceEEEEEeecCC-------CCCCCeEE-EEEeCCCCCC-------ccEEE
Q 023112 60 SGCGFAS--KRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT-------ENVRDELD-FEFLGNRTGQ-------PYTVQ 122 (287)
Q Consensus 60 sga~i~S--k~~~~yG~~eariKlp~g~s~G~v~Afwl~~~~-------p~~~~EID-~E~lG~~~g~-------p~~~~ 122 (287)
++|+|.| ++.|+|||||+|||||.| .|+||||||++.+ |. ++||| ||..||.... ...+|
T Consensus 97 ~Sari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~-sGEIDImE~~Gn~~~~~~g~~~~~~~l~ 173 (321)
T cd02179 97 VSARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYA-SGQIRIAFARGNAVLRADGTDIGGKKLY 173 (321)
T ss_pred eeeeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCC-CCeEEEEEeCCCCccccCCceeccceEE
Confidence 4689999 478999999999999999 8999999999985 45 79999 8999986210 01233
Q ss_pred eeeecCCC-CCcce---EEecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEeCCCC------------------CCCC
Q 023112 123 TNIYANGK-GDREQ---RVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR------------------APFP 180 (287)
Q Consensus 123 tn~~~~g~-g~~e~---~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~------------------~~~P 180 (287)
...+.... ..+.. ......+.+++||+|+++|+|++|+|||||+++++++.... ...|
T Consensus 174 ~g~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aP 253 (321)
T cd02179 174 GGPVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAP 253 (321)
T ss_pred cccccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCC
Confidence 22222111 11111 11112456799999999999999999999999999985310 3469
Q ss_pred CCCCeEEEEEeeeCC
Q 023112 181 MNQPMGVYSTLWEAD 195 (287)
Q Consensus 181 ~~~Pm~l~lnlw~gg 195 (287)
|++|+||+|||++||
T Consensus 254 FD~~FyliLNlAVGG 268 (321)
T cd02179 254 FDKEFYLSLGVGVGG 268 (321)
T ss_pred CCCCeEEEEEEEecC
Confidence 999999999999998
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=8.5e-26 Score=214.58 Aligned_cols=175 Identities=24% Similarity=0.412 Sum_probs=139.7
Q ss_pred eeecCCCeEEeeCCcEEEEEEcC-------CCcceEEEeee--EEeeEEEEEEEeeCCCCCceEEEEEeecC---CCCCC
Q 023112 36 VTWSDAHLRQIEGGRAIQLVLDQ-------NSGCGFASKRQ--YLFGRVSMKIKLVPGDSAGTVTAFYMNSN---TENVR 103 (287)
Q Consensus 36 ~~w~~~~v~~~~~G~~l~L~l~~-------~sga~i~Sk~~--~~yG~~eariKlp~g~s~G~v~Afwl~~~---~p~~~ 103 (287)
++|...++.+..+| .|.|.+++ +++++++|..+ |+||++|+|||+|.+ +|+||||||++. +..++
T Consensus 74 ~~w~~~~~~lt~~~-~l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~wp 150 (355)
T COG2273 74 LTWYVSNVVLTIGG-TLELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGGWP 150 (355)
T ss_pred cceeecceeEeeCC-eeeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCCCC
Confidence 57777777775555 67887774 46899999776 999999999999977 999999999997 44568
Q ss_pred CeEEEEEeCCCCCCccEEEeeeecCCCCCcceEEecCC-CCCCCcEEEEEEEcCCeEEEEECCeeEEEEeCCCCCCCCCC
Q 023112 104 DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWF-DPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMN 182 (287)
Q Consensus 104 ~EID~E~lG~~~g~p~~~~tn~~~~g~g~~e~~~~l~~-d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~P~~ 182 (287)
+|||+|++|++.. +..+|+|++.++.++.+....+.+ +..++||+|+++|.++.|+|||||++++++... ...| +
T Consensus 151 ~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p--~~~~-~ 226 (355)
T COG2273 151 DEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP--DYIP-Q 226 (355)
T ss_pred cceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc--ccCc-C
Confidence 9999999997654 457999999999888777777777 888999999999999999999999999999864 3457 8
Q ss_pred CCeEEEEEeeeCCCccccCCCcccCCCCCCEEEEEcE
Q 023112 183 QPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRD 219 (287)
Q Consensus 183 ~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~ 219 (287)
.||++++|+|.++.+.+.-|. ......|..+.+.+
T Consensus 227 ~p~y~~~nl~~~~~~~~~~~~--~~~~~~~~~~~~~~ 261 (355)
T COG2273 227 IPFYVLVNLWMGGYAGGPPGE--ALSAGSPLNIDYYR 261 (355)
T ss_pred CcceeEEeecccCccCCCccc--cccCCcceEeeeee
Confidence 999999999999866533231 33333445444444
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.84 E-value=2e-21 Score=135.52 Aligned_cols=50 Identities=56% Similarity=1.224 Sum_probs=41.5
Q ss_pred CCCCCCCcccccccccCCHHHHHHHHHHhhcCeEeecCCCCCCCCCC-CCCC
Q 023112 233 CASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVP-PPEC 283 (287)
Q Consensus 233 c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~-~~ec 283 (287)
|.+++..||+++.++ |+++|+++|+|||+||||||||+|++|||.+ |+||
T Consensus 1 C~~~~~~w~~~~~~~-L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 1 CSSSSKSWWNQPYAQ-LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp -TTTTTSGGCSCCCS---HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CcCCCcccccCcccC-CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 655567899998888 9999999999999999999999999999985 9999
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.68 E-value=5.8e-16 Score=151.66 Aligned_cols=188 Identities=19% Similarity=0.280 Sum_probs=126.0
Q ss_pred cCCCeEEeeCCcEEEEEEcCC-------CcceEEE--eeeEEeeEEEEEEEeeCC-CCCceEEEEEeecCC---------
Q 023112 39 SDAHLRQIEGGRAIQLVLDQN-------SGCGFAS--KRQYLFGRVSMKIKLVPG-DSAGTVTAFYMNSNT--------- 99 (287)
Q Consensus 39 ~~~~v~~~~~G~~l~L~l~~~-------sga~i~S--k~~~~yG~~eariKlp~g-~s~G~v~Afwl~~~~--------- 99 (287)
+++.|.. .+| .|.|++++. .|+.++| |+-|+-|++|++++||.. +..|+|||||++++=
T Consensus 159 ~p~~vtt-~~G-~l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~ast 236 (504)
T PF03935_consen 159 DPDAVTT-ENG-SLVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGAST 236 (504)
T ss_pred cCCCcEe-eCC-EEEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCcccccccc
Confidence 4555544 456 689999853 4778888 777899999999999853 467999999999750
Q ss_pred ----------------C--------------------------------CCCCeEE-EEEeCCCCC-Ccc---EEEee--
Q 023112 100 ----------------E--------------------------------NVRDELD-FEFLGNRTG-QPY---TVQTN-- 124 (287)
Q Consensus 100 ----------------p--------------------------------~~~~EID-~E~lG~~~g-~p~---~~~tn-- 124 (287)
| +-..||| +|....... .+. .+|..
T Consensus 237 ~g~WPySYd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP~ 316 (504)
T PF03935_consen 237 DGMWPYSYDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAPF 316 (504)
T ss_pred CceecccccccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeeccc
Confidence 0 0146999 897654321 111 22221
Q ss_pred ------------eecCCC-------CCc-ceEE----ecC---C--CCCCCcEEEEEEEcCC-----eEEEEECCeeEEE
Q 023112 125 ------------IYANGK-------GDR-EQRV----NLW---F--DPAADYHLYTILWNHH-----HIVFYVDDVPIRV 170 (287)
Q Consensus 125 ------------~~~~g~-------g~~-e~~~----~l~---~--d~~~dfHtY~i~Wtp~-----~I~fyVDG~~vr~ 170 (287)
+|.... |+. .|.+ .+. + ....+||+|++||.|. .|+|+|||+++.+
T Consensus 317 d~~y~~~~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twt 396 (504)
T PF03935_consen 317 DIWYRPDYDFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTWT 396 (504)
T ss_pred ccCCCCCCCceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEEE
Confidence 110000 000 0111 111 1 1237899999999864 8999999999999
Q ss_pred EeCCCC--------CCCCCCCCeEEEEEeeeCCCccccCCCcccCCCC--CCEEEEEcEEEEeeecCCCCCcCCC
Q 023112 171 YKNSGR--------APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSK--APFYAYYRDFDIEGCPVPGPANCAS 235 (287)
Q Consensus 171 ~~~~~~--------~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~--~Pf~a~~~~~~v~~c~~~~~~~c~~ 235 (287)
+..... ..+| ..||+|++||....+|+ .+||.+ .|.+|.||+|||..=.-.....|.+
T Consensus 397 i~a~Al~~~~~I~~R~Ip-~EPMyIIlNlgmS~sf~------~vd~~~L~FP~~M~IDYVRVYQ~~~~~~vgCDP 464 (504)
T PF03935_consen 397 INAEALGPNPNIGQRPIP-EEPMYIILNLGMSSSFG------YVDWNHLCFPATMRIDYVRVYQPEDAINVGCDP 464 (504)
T ss_pred EEhhhcCCCCCcCccccC-cCCceeeeccccccccC------ccccccccccceEEEeEEEEeccCCCCeeeeCC
Confidence 975422 4588 89999999999999997 367764 7999999999996543223356754
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.59 E-value=2.9e-14 Score=131.90 Aligned_cols=146 Identities=26% Similarity=0.408 Sum_probs=97.8
Q ss_pred eCCcEEEEEEcCC---------CcceEEEeeeEEeeEEEEEE-EeeCCCCCceEEEEEeecCC-CCCCCeEE-EEEeCCC
Q 023112 47 EGGRAIQLVLDQN---------SGCGFASKRQYLFGRVSMKI-KLVPGDSAGTVTAFYMNSNT-ENVRDELD-FEFLGNR 114 (287)
Q Consensus 47 ~~G~~l~L~l~~~---------sga~i~Sk~~~~yG~~eari-Klp~g~s~G~v~Afwl~~~~-p~~~~EID-~E~lG~~ 114 (287)
++| .|.|.+|+. ++++|.||..|.+|++|+|+ |||.+ .|+||||||++.+ |. .+||| ||.++..
T Consensus 47 ~~g-~l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~g--~G~WPAfW~~g~~WP~-~GEIDImE~vn~~ 122 (293)
T cd02181 47 NSG-NVYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPGG--CGTWPAFWTVGPNWPN-GGEIDIIEGVNLQ 122 (293)
T ss_pred eCC-eEEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCCC--CCccchhhhcCCCCCC-CCcEEEEeccCCC
Confidence 445 588888753 36899999999999999998 99998 9999999999987 77 89999 9999865
Q ss_pred CCCccEEEee----eecCC--CC-------------CcceEEe--------cCCCCCCCcEEEEEEEcCCeEEEEE---C
Q 023112 115 TGQPYTVQTN----IYANG--KG-------------DREQRVN--------LWFDPAADYHLYTILWNHHHIVFYV---D 164 (287)
Q Consensus 115 ~g~p~~~~tn----~~~~g--~g-------------~~e~~~~--------l~~d~~~dfHtY~i~Wtp~~I~fyV---D 164 (287)
.....++||. +-..+ .+ +....+. ..|+ ..+=-+|.+||+.+.|..+. +
T Consensus 123 ~~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWff~R~ 201 (293)
T cd02181 123 TSNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWFFPRG 201 (293)
T ss_pred CceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCcEEEEEecCC
Confidence 4333455553 11111 00 0001111 1121 23446999999999997665 2
Q ss_pred CeeEEEEeCC-CC-------CCCCCC---------CCeEEEEEeeeCCCcc
Q 023112 165 DVPIRVYKNS-GR-------APFPMN---------QPMGVYSTLWEADDWA 198 (287)
Q Consensus 165 G~~vr~~~~~-~~-------~~~P~~---------~Pm~l~lnlw~gg~Wa 198 (287)
.+|--..... +. ..|| . ++++|++|+--=|+||
T Consensus 202 ~iP~di~~~~pdPs~WG~P~A~f~-~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 202 SIPADITSGSPDPSTWGTPAASFP-GSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred CCCcccccCCCCCcccCcccccCC-CCCCChhHhcccCEEEEEeecccccc
Confidence 3332111111 11 4465 3 7899999999999999
No 18
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=96.13 E-value=0.45 Score=38.00 Aligned_cols=66 Identities=17% Similarity=0.315 Sum_probs=39.0
Q ss_pred CCCCcEEEEEEEcCCeEEEEECCeeEEEEeCCCCCCCCCCCCeEEEEEeeeCCCccccCCCcccCCCCCCEEEEEcEEEE
Q 023112 143 PAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDI 222 (287)
Q Consensus 143 ~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v 222 (287)
+...||..++-|..+.+.+||||+++.+.........+...+++ .|+.. ....+|...++.++|
T Consensus 83 ~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~~~~~~~~~~~------iG~~~----------~~~~~~~g~i~~~~i 146 (157)
T PF13385_consen 83 PDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSNISLNSNGPLF------IGGSG----------GGSSPFNGYIDDLRI 146 (157)
T ss_dssp -TT-EEEEEEEEETTEEEEEETTEEETTCTEESSSSTTSCCEEE------ESS-S----------TT--B-EEEEEEEEE
T ss_pred CCCCEEEEEEEEECCeEEEEECCEEEEeEeccCCcCCCCcceEE------EeecC----------CCCCceEEEEEEEEE
Confidence 45889999999999999999999988654321100111012221 22221 236789999999998
Q ss_pred ee
Q 023112 223 EG 224 (287)
Q Consensus 223 ~~ 224 (287)
..
T Consensus 147 ~~ 148 (157)
T PF13385_consen 147 YN 148 (157)
T ss_dssp ES
T ss_pred EC
Confidence 54
No 19
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=89.99 E-value=9.1 Score=31.01 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=43.7
Q ss_pred CCCCcEEEEEEEcC--CeEEEEECCeeEEEEeCCCCCCCCCCCCeEEEEEeeeCCCccccCCCcccCCCCCCEEEEEcEE
Q 023112 143 PAADYHLYTILWNH--HHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDF 220 (287)
Q Consensus 143 ~~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~ 220 (287)
+...||...+-++. .+|++||||+++.+.... ..+...|+.+=..... ++ ....+|.-.++.+
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~---~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Idev 123 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ---PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLDEV 123 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC---CcccCCceEEeeeccC-------CC-----CCCCCceEEeeEE
Confidence 44789999999988 799999999998654321 1121233332110110 11 1245799999999
Q ss_pred EEeeec
Q 023112 221 DIEGCP 226 (287)
Q Consensus 221 ~v~~c~ 226 (287)
+|..+.
T Consensus 124 riy~~a 129 (133)
T smart00560 124 RVYNRA 129 (133)
T ss_pred EEeccc
Confidence 997764
No 20
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=89.24 E-value=3.7 Score=34.60 Aligned_cols=105 Identities=17% Similarity=0.278 Sum_probs=56.0
Q ss_pred CCcceEEEeeeEEeeEEEEEEEeeCCCCCceEEEEEeecCC------CCCCCeEEEEEeCCCCCCccEEEeeeecCCCCC
Q 023112 59 NSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT------ENVRDELDFEFLGNRTGQPYTVQTNIYANGKGD 132 (287)
Q Consensus 59 ~sga~i~Sk~~~~yG~~eariKlp~g~s~G~v~Afwl~~~~------p~~~~EID~E~lG~~~g~p~~~~tn~~~~g~g~ 132 (287)
..++-+.|+..|.=..+++.+|+.++ | -..+++-... +...-|+.+.--+..... ....|.--
T Consensus 41 ~~~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~~~-------~~~~G~~~ 109 (185)
T PF06439_consen 41 SGGGYLYTDKKFSDFELEVDFKITPG---G-NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGTGL-------PNSTGSLY 109 (185)
T ss_dssp SSS--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCSTT-------TTSTTSBT
T ss_pred CCcceEEECCccccEEEEEEEEECCC---C-CeEEEEEeccccCCCCcceEEEEEEECCCCccCC-------CCccceEE
Confidence 34677888888888899999998543 2 3344443331 111334443322111000 00011100
Q ss_pred cc---eEE--ecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEeCC
Q 023112 133 RE---QRV--NLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 174 (287)
Q Consensus 133 ~e---~~~--~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~ 174 (287)
.+ +.. .....+..+||++.|.-..++|+.+|||++|-++...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 110 DEPPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp TTB-TCB-SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred EeccccccccccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 00 000 0112356799999999999999999999999998864
No 21
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=88.07 E-value=5.8 Score=34.95 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=41.9
Q ss_pred CCCCcEEEEEEEc--CCeEEEEECCeeEEEEeCCCCCCCCCCCCeEEEEEeeeCCCccccCCCcccCCCCCCEEEEEcEE
Q 023112 143 PAADYHLYTILWN--HHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDF 220 (287)
Q Consensus 143 ~~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~ 220 (287)
....||...+.|+ ..++.+||||+++.. .... ...+....-.|+|+-- -+.+ ||. .| ....|.-.+++|
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~-~~~~-~g~~i~~~G~lvlGq~-qd~~---gg~--f~-~~~~f~G~i~~v 158 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR-KGLA-KGYTVKPGGSIILGQE-QDSY---GGG--FD-ATQSFVGEIGDL 158 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc-cccc-CCcEECCCCEEEEEec-ccCC---CCC--CC-CCcceeEEEeee
Confidence 4578999999997 457999999998621 1110 1111122334444431 1222 342 34 245688999999
Q ss_pred EE
Q 023112 221 DI 222 (287)
Q Consensus 221 ~v 222 (287)
+|
T Consensus 159 ~i 160 (206)
T smart00159 159 NM 160 (206)
T ss_pred EE
Confidence 88
No 22
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=87.48 E-value=1.1 Score=39.36 Aligned_cols=28 Identities=29% Similarity=0.619 Sum_probs=24.7
Q ss_pred CCcEEEEEEEcC--CeEEEEECCeeEEEEe
Q 023112 145 ADYHLYTILWNH--HHIVFYVDDVPIRVYK 172 (287)
Q Consensus 145 ~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~ 172 (287)
.+||.|.|...| ..-.|||||++|++..
T Consensus 92 ~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~ 121 (198)
T PF09264_consen 92 HGYHKYEIVFSPLTNTASFYFDGTLIATWS 121 (198)
T ss_dssp CSEEEEEEEEETTTTEEEEEETTEEEEEE-
T ss_pred cceeEEEEEecCCCCceEEEECCEEEeecc
Confidence 479999999977 8999999999999853
No 23
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=86.29 E-value=15 Score=31.56 Aligned_cols=88 Identities=18% Similarity=0.231 Sum_probs=50.5
Q ss_pred EEEEEEEeeCCCCCceEEEEEeecCCCCCCCeEEEEEeCCCCCCccEEEeeeecCCCCCcceEEecC--CCCCCCcEEEE
Q 023112 74 RVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLW--FDPAADYHLYT 151 (287)
Q Consensus 74 ~~eariKlp~g~s~G~v~Afwl~~~~p~~~~EID~E~lG~~~g~p~~~~tn~~~~g~g~~e~~~~l~--~d~~~dfHtY~ 151 (287)
.+.+.+|..+. +.|+.-++.-. + . ..++-++..|.. + .+.. +..+..+..+..... .-....||..+
T Consensus 55 si~~~~r~~~~-~~g~L~si~~~-~--~-~~~l~v~l~g~~---~-~~~~--~~~~~~g~~~~~~f~~~~l~dg~WH~la 123 (184)
T smart00210 55 SLLTTFRQTPK-SRGVLFAIYDA-Q--N-VRQFGLEVDGRA---N-TLLL--RYQGVDGKQHTVSFRNLPLADGQWHKLA 123 (184)
T ss_pred EEEEEEEeCCC-CCeEEEEEEcC-C--C-cEEEEEEEeCCc---c-EEEE--EECCCCCcEEEEeecCCccccCCceEEE
Confidence 46777777643 35665555432 2 1 345556655532 1 2332 221222222222111 12456899999
Q ss_pred EEEcCCeEEEEECCeeEEEEe
Q 023112 152 ILWNHHHIVFYVDDVPIRVYK 172 (287)
Q Consensus 152 i~Wtp~~I~fyVDG~~vr~~~ 172 (287)
+.+..+.+++|||++++.+..
T Consensus 124 l~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 124 LSVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred EEEeCCEEEEEECCcccccee
Confidence 999999999999999987754
No 24
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=83.39 E-value=5.7 Score=36.19 Aligned_cols=78 Identities=10% Similarity=0.187 Sum_probs=47.6
Q ss_pred EEEEEEEeeCCC-----CCceEEEEEeecCC-C--------------CCCCeEE-EEEeCCCCCCccEEEeeeec-CCCC
Q 023112 74 RVSMKIKLVPGD-----SAGTVTAFYMNSNT-E--------------NVRDELD-FEFLGNRTGQPYTVQTNIYA-NGKG 131 (287)
Q Consensus 74 ~~eariKlp~g~-----s~G~v~Afwl~~~~-p--------------~~~~EID-~E~lG~~~g~p~~~~tn~~~-~g~g 131 (287)
-|-.+.+||... ...=.||+||++.. | .-.+|+| ||.|.... . .+-+.+|. +|..
T Consensus 102 ~Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g~--~-k~~St~H~~qG~~ 178 (235)
T PF10287_consen 102 MFLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSGD--D-KLKSTFHDYQGTD 178 (235)
T ss_pred EEEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCCC--c-eeEEEEecccCcc
Confidence 367778888731 13458999999864 1 1289999 99997643 3 45555554 3321
Q ss_pred ------CcceEEecCCCCCCCcEEEEEEEcCC
Q 023112 132 ------DREQRVNLWFDPAADYHLYTILWNHH 157 (287)
Q Consensus 132 ------~~e~~~~l~~d~~~dfHtY~i~Wtp~ 157 (287)
+....+ ..|++..-++++.++.+
T Consensus 179 ~~~~g~G~~~yf---~RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 179 DINGGGGSSDYF---KRPTSGTMKVAVIFDSS 207 (235)
T ss_pred ccCCCCCCCCcc---cCCCCCCeEEEEEEcCC
Confidence 111111 13677888888888643
No 25
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=81.22 E-value=26 Score=27.98 Aligned_cols=84 Identities=15% Similarity=0.159 Sum_probs=48.1
Q ss_pred eeEEEEEEEeeCCCCCceEEEEEeecCCCCCCCeEEEEEeCCCCCCccEEEeeeecCCCCCcceEEecCC-CCCCCcEEE
Q 023112 72 FGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWF-DPAADYHLY 150 (287)
Q Consensus 72 yG~~eariKlp~g~s~G~v~Afwl~~~~p~~~~EID~E~lG~~~g~p~~~~tn~~~~g~g~~e~~~~l~~-d~~~dfHtY 150 (287)
...+++++|.... .|+. |++.+.. . .+.+-+|... | .+...+- .+ .....+.... -....||..
T Consensus 21 ~~~i~~~frt~~~--~g~l--~~~~~~~-~-~~~~~l~l~~---g---~l~~~~~-~g--~~~~~~~~~~~v~dg~Wh~v 85 (151)
T cd00110 21 RLSISFSFRTTSP--NGLL--LYAGSQN-G-GDFLALELED---G---RLVLRYD-LG--SGSLVLSSKTPLNDGQWHSV 85 (151)
T ss_pred eeEEEEEEEeCCC--CeEE--EEecCCC-C-CCEEEEEEEC---C---EEEEEEc-CC--cccEEEEccCccCCCCEEEE
Confidence 4467777777654 5655 3333321 2 4555566653 2 2332221 12 2222333221 235679999
Q ss_pred EEEEcCCeEEEEECCeeEEE
Q 023112 151 TILWNHHHIVFYVDDVPIRV 170 (287)
Q Consensus 151 ~i~Wtp~~I~fyVDG~~vr~ 170 (287)
.|.+..+.++.+|||.+..+
T Consensus 86 ~i~~~~~~~~l~VD~~~~~~ 105 (151)
T cd00110 86 SVERNGRSVTLSVDGERVVE 105 (151)
T ss_pred EEEECCCEEEEEECCccEEe
Confidence 99999999999999985433
No 26
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=78.81 E-value=44 Score=29.13 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=42.2
Q ss_pred CCCCcEEEEEEEc--CCeEEEEECCeeEEEEeCCCCCCCCCCCCeEEEEEeeeCCCccccCCCcccCCCCCCEEEEEcEE
Q 023112 143 PAADYHLYTILWN--HHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDF 220 (287)
Q Consensus 143 ~~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~ 220 (287)
....||...+.|+ ..++.+||||+++.+-.-.....++ ....|+|+-- -..-||. .+ ....|.-.++.|
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~~~~~~~~~--~~g~l~lG~~----q~~~gg~--~~-~~~~f~G~I~~v 158 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKSLKKGYTVG--PGGSIILGQE----QDSYGGG--FD-ATQSFVGEISDV 158 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEeccccccCCCEEC--CCCeEEEeec----ccCCCCC--CC-CCcceEEEEcee
Confidence 5678999999997 4579999999987543211001222 2223443321 1111342 33 245788999999
Q ss_pred EE
Q 023112 221 DI 222 (287)
Q Consensus 221 ~v 222 (287)
+|
T Consensus 159 ~i 160 (201)
T cd00152 159 NM 160 (201)
T ss_pred EE
Confidence 88
No 27
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=74.02 E-value=63 Score=28.55 Aligned_cols=131 Identities=15% Similarity=0.260 Sum_probs=67.5
Q ss_pred EEeeEEEEEEEeeCCCCCceEEEEEeecCCC-C--------CCCeEEEEEeCCCCCCccEEEeeeecCCCCCcceEEecC
Q 023112 70 YLFGRVSMKIKLVPGDSAGTVTAFYMNSNTE-N--------VRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLW 140 (287)
Q Consensus 70 ~~yG~~eariKlp~g~s~G~v~Afwl~~~~p-~--------~~~EID~E~lG~~~g~p~~~~tn~~~~g~g~~e~~~~l~ 140 (287)
..-|.+-++.|.... + -+-|++-.+++. . ..+++=+|+.+....+-+...+..-..+ .
T Consensus 32 L~~gTI~i~Fk~~~~--~-~~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~----------~ 98 (190)
T PF02973_consen 32 LEEGTIVIRFKSDSN--S-GIQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRG----------G 98 (190)
T ss_dssp -SSEEEEEEEEESS---S-SEEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--S----------E
T ss_pred ccccEEEEEEecCCC--c-ceeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEecc----------c
Confidence 445677777776443 3 344555555541 0 0236778888766443333222211100 0
Q ss_pred CCCCCCcEEEEEEEc--CCeEEEEECCeeEEEEeCCCC---CCCCCCCCeEEEEEeeeCCCccccCCCcccCCCCCCEEE
Q 023112 141 FDPAADYHLYTILWN--HHHIVFYVDDVPIRVYKNSGR---APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYA 215 (287)
Q Consensus 141 ~d~~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~---~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a 215 (287)
.-....||+-++.=+ ..+..+|+||+.+.++..... ...| .+=.+. .|+. .++|. ..-||.-
T Consensus 99 ~~~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~~~Fis~i~--~~n~~~----iG~t--~R~g~-----~~y~f~G 165 (190)
T PF02973_consen 99 YKNNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKSGNFISDIP--GLNSVQ----IGGT--NRAGS-----NAYPFNG 165 (190)
T ss_dssp ETTEES-EEEEEEEETTTTEEEEEETTCEEEEEEECTSS-GGGST--T--EEE----ESSE--EETTE-----EES--EE
T ss_pred ccCCceEEEEEEEEecCCCeEEEEeCCeeEEEeccccccHhhcCc--CCceEE----Ecce--EeCCC-----ceecccc
Confidence 012346888888886 678999999988888764431 2222 111222 2321 22331 3569999
Q ss_pred EEcEEEEeeec
Q 023112 216 YYRDFDIEGCP 226 (287)
Q Consensus 216 ~~~~~~v~~c~ 226 (287)
.+++++|..+.
T Consensus 166 ~I~~l~iYn~a 176 (190)
T PF02973_consen 166 TIDNLKIYNRA 176 (190)
T ss_dssp EEEEEEEESS-
T ss_pred eEEEEEEEcCc
Confidence 99999997763
No 28
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=73.95 E-value=35 Score=29.86 Aligned_cols=76 Identities=16% Similarity=0.303 Sum_probs=46.3
Q ss_pred EecCCCCCCCcEEEEEE--EcC---CeEEEEECCeeEEEEeCCCCCCCCCCCCeEEEEEeeeCCCccccCCCcccCCCCC
Q 023112 137 VNLWFDPAADYHLYTIL--WNH---HHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKA 211 (287)
Q Consensus 137 ~~l~~d~~~dfHtY~i~--Wtp---~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~ 211 (287)
..+...+...||.+.|. |.+ ..|..++||+++-..... ..++.....++-++|.-.+ |.+..+. .+
T Consensus 144 ~~~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~--~~~~~~~~~y~K~GiYr~~-~~~~~~~--~~---- 214 (224)
T PF14099_consen 144 VDLGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGP--TGYNDDRGPYFKFGIYRSG-WKNDPNE--SD---- 214 (224)
T ss_dssp EECCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEE--ECECCSSEEEEEEEEEEHC-CHHHSC----S----
T ss_pred ecCCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCC--ceeCCCCcceeEEEEECCC-CcCCCcc--cc----
Confidence 33444455889998775 764 689999999999887763 3344236778888887543 2211111 11
Q ss_pred CEEEEEcEEEE
Q 023112 212 PFYAYYRDFDI 222 (287)
Q Consensus 212 Pf~a~~~~~~v 222 (287)
-...||+|++
T Consensus 215 -~~vy~D~v~~ 224 (224)
T PF14099_consen 215 -TQVYYDNVRI 224 (224)
T ss_dssp -S-EEEEEEE-
T ss_pred -cEEEeccccC
Confidence 1188888875
No 29
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=69.62 E-value=48 Score=25.35 Aligned_cols=76 Identities=12% Similarity=0.160 Sum_probs=49.0
Q ss_pred CCCCcEEEEEEEcCCeEEEEECCeeEEEEeCCCCCCCCCCCCeEEEEEeeeCCCccccCCCcccCCCCCCEEEEEcEEEE
Q 023112 143 PAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDI 222 (287)
Q Consensus 143 ~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v 222 (287)
....||+-.+.=....++..||+............ ..-+...-.++.||.-...... ..-....|.-.+++++|
T Consensus 52 ~dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~----~~~~~~~~~l~iGg~~~~~~~~--~~~~~~~f~Gci~~l~v 125 (128)
T PF02210_consen 52 NDGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSS----SDSLDPDGSLYIGGLPESNQPS--GSVDTPGFVGCIRDLRV 125 (128)
T ss_dssp TSSSEEEEEEEEETTEEEEEETTSEEEEEESSSTT----HHCBESEEEEEESSTTTTCTCT--TSSTTSB-EEEEEEEEE
T ss_pred cccceeEEEEEEeeeeEEEEecCccceEEeccccc----eecccCCCCEEEecccCccccc--cccCCCCcEEEcCeEEE
Confidence 45679999999999999999999988877643210 0023345557778754421111 11116678888888888
Q ss_pred ee
Q 023112 223 EG 224 (287)
Q Consensus 223 ~~ 224 (287)
++
T Consensus 126 ng 127 (128)
T PF02210_consen 126 NG 127 (128)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 30
>smart00282 LamG Laminin G domain.
Probab=63.61 E-value=31 Score=27.34 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=23.6
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeeEEEE
Q 023112 144 AADYHLYTILWNHHHIVFYVDDVPIRVY 171 (287)
Q Consensus 144 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~~ 171 (287)
...||.-.|.-..+.+..+|||......
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~ 88 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSG 88 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccE
Confidence 4579999999999999999999765443
No 31
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=60.44 E-value=31 Score=26.67 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=17.1
Q ss_pred eecCCCeEEeeCCcEEEEEEcCCCc
Q 023112 37 TWSDAHLRQIEGGRAIQLVLDQNSG 61 (287)
Q Consensus 37 ~w~~~~v~~~~~G~~l~L~l~~~sg 61 (287)
.+.|+.+++ ..|+.++|++.+.+.
T Consensus 31 ~f~P~~i~v-~~G~~v~l~~~N~~~ 54 (104)
T PF13473_consen 31 GFSPSTITV-KAGQPVTLTFTNNDS 54 (104)
T ss_dssp EEES-EEEE-ETTCEEEEEEEE-SS
T ss_pred eEecCEEEE-cCCCeEEEEEEECCC
Confidence 688888988 678878888876543
No 32
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=57.58 E-value=33 Score=30.85 Aligned_cols=59 Identities=24% Similarity=0.493 Sum_probs=38.1
Q ss_pred CCcEEEEEEEcCCeEEEEECCeeEEEEeCCCCCCCCCCCCeEEEEEeeeCCCccccCCCcccCCCC-CCEEEEEcEEEE
Q 023112 145 ADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSK-APFYAYYRDFDI 222 (287)
Q Consensus 145 ~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~-~Pf~a~~~~~~v 222 (287)
..|+.-.|.=....|.|.|||.+|...+.......|- -.+|+ |-..+ +|.+|.|+++.|
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~~~gPv-----------------l~~G~--IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGSTYGPV-----------------LRGGR--IGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SSSSSS--------------------SBE--EEEEEETT-EEEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCCccCCc-----------------ccCcE--eeeeccchhhhhhccccC
Confidence 3677778888999999999999999987542111231 01454 33344 799999999986
No 33
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=54.46 E-value=1.5e+02 Score=25.91 Aligned_cols=86 Identities=22% Similarity=0.365 Sum_probs=46.5
Q ss_pred CCCCcEEEEEEEcC--CeEEEEECCeeEEEEeCCCCCCCCCCCCeEEEEEeeeCCCccccCCCcccCCCCCCEEEEEcEE
Q 023112 143 PAADYHLYTILWNH--HHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDF 220 (287)
Q Consensus 143 ~~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~ 220 (287)
....||.+.+-|+. ..+.+|+||+....-........| .-..++|+--- + .-||. .| ..-.|.-++.+|
T Consensus 82 ~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~~~~g~~i~--~gG~~vlGQeQ--d--~~gG~--fd-~~q~F~G~i~~~ 152 (195)
T PF00354_consen 82 RDGQWHHICVTWDSSTGRWQLYVDGVRLSSTGLATGHSIP--GGGTLVLGQEQ--D--SYGGG--FD-ESQAFVGEISDF 152 (195)
T ss_dssp -TSS-EEEEEEEETTTTEEEEEETTEEEEEEESSTT--B---SSEEEEESS-B--S--BTTBT--CS-GGGB--EEEEEE
T ss_pred CCCCcEEEEEEEecCCcEEEEEECCEecccccccCCceEC--CCCEEEECccc--c--ccCCC--cC-CccEeeEEEece
Confidence 45789999999965 789999999955332222112222 12234433211 1 22453 44 345899999999
Q ss_pred EEeeecCCCCCcCCCCCCCcccccccccCCHHHHHHHHH
Q 023112 221 DIEGCPVPGPANCASNPGNWWEANNYQALTAMEARRYRW 259 (287)
Q Consensus 221 ~v~~c~~~~~~~c~~~~~~~~~~~~~~~l~~~~~~~~~~ 259 (287)
++ |+. .|++.|+++|..
T Consensus 153 ~i------------------Wd~----vLs~~eI~~l~~ 169 (195)
T PF00354_consen 153 NI------------------WDR----VLSPEEIRALAS 169 (195)
T ss_dssp EE------------------ESS-------HHHHHHHHH
T ss_pred EE------------------Eee----eCCHHHHHHHHh
Confidence 87 554 788888777754
No 34
>PRK02710 plastocyanin; Provisional
Probab=46.26 E-value=56 Score=26.14 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=11.4
Q ss_pred eecCCCeEEeeCCcEEEEEE
Q 023112 37 TWSDAHLRQIEGGRAIQLVL 56 (287)
Q Consensus 37 ~w~~~~v~~~~~G~~l~L~l 56 (287)
.+.++.+.+ +.|+.++++.
T Consensus 43 ~F~P~~i~v-~~Gd~V~~~N 61 (119)
T PRK02710 43 AFEPSTLTI-KAGDTVKWVN 61 (119)
T ss_pred EEeCCEEEE-cCCCEEEEEE
Confidence 456666666 4555666654
No 35
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=43.75 E-value=35 Score=28.36 Aligned_cols=47 Identities=11% Similarity=0.216 Sum_probs=25.1
Q ss_pred HHHhhhhcccccCcccccCceeeecCCCeEEeeCCcEEEEEEcCCCcce
Q 023112 15 YCLVSCSCVLGRPATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCG 63 (287)
Q Consensus 15 ~~~~~~~~~~~~~~~f~~~f~~~w~~~~v~~~~~G~~l~L~l~~~sga~ 63 (287)
++++++.+.++......+-|.. ...++++...|..+.+..|...|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~af~~--~qs~~qv~g~G~V~~vLpdd~~Gsr 57 (131)
T PF11948_consen 11 VLSAFSTALAASDTCLQQAFEN--QQSDVQVSGCGTVVKVLPDDNKGSR 57 (131)
T ss_pred HHHHhccccccchHHHHHHHHh--hccCeeEeccEEEEEECcccCCCCc
Confidence 3333433333333333333432 3455667667777777667777876
No 36
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=42.98 E-value=29 Score=36.26 Aligned_cols=52 Identities=17% Similarity=0.349 Sum_probs=36.5
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeeEEEEeCCCCCCCCCCCCeEEEEEeeeCCCcc
Q 023112 144 AADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWA 198 (287)
Q Consensus 144 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wa 198 (287)
..+||.|.+.-+=-.++.||||+-..-..-. .+|| -.|.++-.-|=+|-=|.
T Consensus 441 D~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~--ddwp-lHpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 441 DNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT--DDWP-LHPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhheeEEeecCceEEEEEcCcccCCceec--cCCc-cCcccccceeEEeeecc
Confidence 5789999999975559999999754322111 5688 46666666666676777
No 37
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=42.65 E-value=83 Score=25.16 Aligned_cols=49 Identities=22% Similarity=0.341 Sum_probs=34.3
Q ss_pred eeecCCCCCcceEEe-cCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEeC
Q 023112 124 NIYANGKGDREQRVN-LWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN 173 (287)
Q Consensus 124 n~~~~g~g~~e~~~~-l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~ 173 (287)
|.+.+|.-+.|++.. .+|.+.+ ...-.|.=+++....+|||+++.++..
T Consensus 56 Ns~~~g~Wg~Eer~~~~pf~~g~-~F~l~i~~~~~~f~i~vng~~~~~F~~ 105 (127)
T cd00070 56 NSFLNGNWGPEERSGGFPFQPGQ-PFELTILVEEDKFQIFVNGQHFFSFPH 105 (127)
T ss_pred cCCCCCEecHhhccCCCCCCCCC-eEEEEEEEcCCEEEEEECCEeEEEecC
Confidence 344444445565554 4554444 448889999999999999999988763
No 38
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=39.16 E-value=27 Score=27.32 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=4.3
Q ss_pred HHHHHHHHhhh
Q 023112 10 LFVLLYCLVSC 20 (287)
Q Consensus 10 ~~~~~~~~~~~ 20 (287)
|||+++++.++
T Consensus 11 l~LA~lLlisS 21 (95)
T PF07172_consen 11 LLLAALLLISS 21 (95)
T ss_pred HHHHHHHHHHh
Confidence 33334444443
No 39
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=37.09 E-value=1.3e+02 Score=22.27 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=16.9
Q ss_pred EeeCCcEEEEEEcCCCcceEEE
Q 023112 45 QIEGGRAIQLVLDQNSGCGFAS 66 (287)
Q Consensus 45 ~~~~G~~l~L~l~~~sga~i~S 66 (287)
.+.+|+.+.+.+|..+|.-++.
T Consensus 61 ~~~dG~~~ev~vD~~tG~V~~~ 82 (83)
T PF13670_consen 61 RDKDGKKVEVYVDPATGEVVKE 82 (83)
T ss_pred EECCCCEEEEEEcCCCCeEeec
Confidence 4567888999999888866554
No 40
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=34.31 E-value=52 Score=24.64 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=22.3
Q ss_pred eEEEEECCeeEEEEeCCCCCCCCCCCCeEEEEEee
Q 023112 158 HIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLW 192 (287)
Q Consensus 158 ~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw 192 (287)
.+.|||||+++.+........++...|..-.|.+-
T Consensus 44 ~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~vv 78 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTVV 78 (89)
T ss_pred cEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEEE
Confidence 78899999999665543323343246666666663
No 41
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=28.66 E-value=69 Score=18.99 Aligned_cols=18 Identities=22% Similarity=0.606 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHhhhh
Q 023112 4 LRNAIALFVLLYCLVSCS 21 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (287)
.|.|+.+++++++++.|+
T Consensus 7 mKkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 7 MKKILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 456666666666676665
No 42
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=28.65 E-value=95 Score=26.59 Aligned_cols=37 Identities=19% Similarity=0.438 Sum_probs=28.1
Q ss_pred cceEEecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEE
Q 023112 133 REQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRV 170 (287)
Q Consensus 133 ~e~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~ 170 (287)
+..++.+|. .+.|=|.|+|.-..+.+..|++|..+++
T Consensus 91 ~~k~~~~W~-~t~dg~~~RivL~kdtm~~w~NG~~l~T 127 (187)
T KOG4352|consen 91 MTKQYRLWL-YTDDGQEYRIVLKKDTMSLWVNGDELRT 127 (187)
T ss_pred hhhheeEEE-EecCCceEEEEEeccceeeEEcCccccc
Confidence 344555553 2334499999999999999999998876
No 43
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=28.57 E-value=57 Score=23.94 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhhhcccccCcccccCceeeecC
Q 023112 7 AIALFVLLYCLVSCSCVLGRPATFLEDFKVTWSD 40 (287)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~f~~~f~~~w~~ 40 (287)
.|+.|++++++.+.++-..++.-++-++...|.-
T Consensus 5 Si~VLlaLvLIg~fAVqSdag~~y~p~y~~~~~y 38 (71)
T PF04202_consen 5 SIAVLLALVLIGSFAVQSDAGYYYYPGYNAPRRY 38 (71)
T ss_pred hHHHHHHHHHHhhheeeecCccccCCCCCCCccc
Confidence 3466666777777666555566666666666643
No 44
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=24.29 E-value=1.1e+02 Score=24.26 Aligned_cols=29 Identities=7% Similarity=0.133 Sum_probs=24.1
Q ss_pred CCCCcEEEEEEEcCCeEEEEECCeeEEEEe
Q 023112 143 PAADYHLYTILWNHHHIVFYVDDVPIRVYK 172 (287)
Q Consensus 143 ~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 172 (287)
+.++-|++.+. ..+..+++|||+++-...
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECS
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCC
Confidence 56788999888 788899999999996554
No 45
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=22.04 E-value=3.8e+02 Score=20.90 Aligned_cols=41 Identities=20% Similarity=0.406 Sum_probs=21.4
Q ss_pred EEEEEcCCCcceEEEeeeEEeeEEEEEEEeeCCCCCceEEEEEeecCC
Q 023112 52 IQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT 99 (287)
Q Consensus 52 l~L~l~~~sga~i~Sk~~~~yG~~eariKlp~g~s~G~v~Afwl~~~~ 99 (287)
.+.++.+..+ .+-..|+.+----.||+-+. .| +.|||+..+
T Consensus 39 pevti~~~~~---~~ieEyRv~G~l~~IkV~P~--~G--~~Yyl~d~d 79 (105)
T PF11191_consen 39 PEVTIIEDGG---STIEEYRVNGQLYMIKVQPK--AG--PPYYLVDPD 79 (105)
T ss_pred CCEEEEecCC---cEEEEEEECCeEeeEEEEeC--CC--CCEEEECCC
Confidence 3344444444 23345554422223444444 46 999999886
No 46
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=21.75 E-value=2.2e+02 Score=22.67 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=33.4
Q ss_pred eeecCCCCCcceE-EecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEeC
Q 023112 124 NIYANGKGDREQR-VNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN 173 (287)
Q Consensus 124 n~~~~g~g~~e~~-~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~ 173 (287)
|.+.+|.-+.|++ ...+|.+... -+-.|.=+++....+|||+.+..+..
T Consensus 61 Ns~~~g~Wg~Ee~~~~~pf~~g~~-F~i~I~~~~~~f~I~vng~~~~~F~~ 110 (133)
T PF00337_consen 61 NSRINGKWGQEERESPFPFQPGQP-FEIRIRVEEDGFKIYVNGKHFCSFPH 110 (133)
T ss_dssp EEEETTEE-SEEEESSTSSTTTSE-EEEEEEEESSEEEEEETTEEEEEEE-
T ss_pred eceECCEeccceeeeeeeecCCce-EEEEEEEecCeeEEEECCeEEEEeeC
Confidence 4444555456666 3345555454 47778888999999999999999874
No 47
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=20.77 E-value=1.6e+02 Score=22.37 Aligned_cols=47 Identities=11% Similarity=0.295 Sum_probs=28.9
Q ss_pred ecCCCeEEeeCCcEEEEEEcCCCcceEEEeeeEEeeEEEEEEEeeCC
Q 023112 38 WSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPG 84 (287)
Q Consensus 38 w~~~~v~~~~~G~~l~L~l~~~sga~i~Sk~~~~yG~~eariKlp~g 84 (287)
..++.+.+.-.++.|+++-.+..-..-.....+.||.|+=++.||.+
T Consensus 19 ~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~ 65 (87)
T cd06482 19 FEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPG 65 (87)
T ss_pred CCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCC
Confidence 44556666555556777776432111001235799999999999964
No 48
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=20.35 E-value=2.2e+02 Score=20.91 Aligned_cols=45 Identities=9% Similarity=0.138 Sum_probs=30.1
Q ss_pred eecCCCeEEeeCCcEEEEEEcCCCcceEEEeeeEEeeEEEEEEEeeCC
Q 023112 37 TWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPG 84 (287)
Q Consensus 37 ~w~~~~v~~~~~G~~l~L~l~~~sga~i~Sk~~~~yG~~eariKlp~g 84 (287)
.+.++++.+.-+++.|.++..+..... ...+.+|+|+=+++||..
T Consensus 17 G~~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~ 61 (83)
T cd06526 17 GFKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEG 61 (83)
T ss_pred CCCHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCC
Confidence 356666776666677777776543211 245678999999999865
Done!