Query 023113
Match_columns 287
No_of_seqs 379 out of 1692
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 16:35:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.8 7.7E-20 2.6E-24 139.0 7.6 63 125-187 14-76 (80)
2 2da3_A Alpha-fetoprotein enhan 99.8 8.6E-20 3E-24 138.2 6.8 63 126-188 15-77 (80)
3 1nk2_P Homeobox protein VND; h 99.8 1.6E-19 5.6E-24 136.3 7.4 66 126-191 7-72 (77)
4 2vi6_A Homeobox protein nanog; 99.8 8.1E-20 2.8E-24 132.3 5.1 61 127-187 2-62 (62)
5 2kt0_A Nanog, homeobox protein 99.8 1.2E-19 4.2E-24 138.8 6.4 63 125-187 19-81 (84)
6 2cra_A Homeobox protein HOX-B1 99.8 1.1E-19 3.9E-24 134.7 6.0 62 126-187 5-66 (70)
7 2cue_A Paired box protein PAX6 99.8 2.5E-19 8.5E-24 136.2 8.0 63 126-188 5-67 (80)
8 2dmu_A Homeobox protein goosec 99.8 2.2E-19 7.6E-24 133.0 7.2 62 127-188 6-67 (70)
9 2dmq_A LIM/homeobox protein LH 99.8 2.2E-19 7.7E-24 136.1 7.2 63 127-189 6-68 (80)
10 2h1k_A IPF-1, pancreatic and d 99.8 1.7E-19 5.7E-24 131.1 6.2 61 127-187 2-62 (63)
11 1wh5_A ZF-HD homeobox family p 99.8 1.7E-19 5.8E-24 137.7 6.4 61 125-185 14-78 (80)
12 2da2_A Alpha-fetoprotein enhan 99.8 2.1E-19 7E-24 133.0 6.3 63 126-188 5-67 (70)
13 1b72_A Protein (homeobox prote 99.8 2E-19 6.9E-24 141.5 6.6 94 82-189 2-95 (97)
14 3a01_A Homeodomain-containing 99.8 3.1E-19 1.1E-23 139.7 7.5 66 126-191 15-80 (93)
15 2dms_A Homeobox protein OTX2; 99.8 2.3E-19 7.8E-24 136.3 6.5 64 126-189 5-68 (80)
16 2e1o_A Homeobox protein PRH; D 99.8 4.2E-19 1.4E-23 131.6 7.4 61 127-187 6-66 (70)
17 2djn_A Homeobox protein DLX-5; 99.8 2.3E-19 8E-24 132.9 5.5 62 126-187 5-66 (70)
18 2da1_A Alpha-fetoprotein enhan 99.8 3.2E-19 1.1E-23 132.0 5.6 61 127-187 6-66 (70)
19 1puf_A HOX-1.7, homeobox prote 99.8 1.2E-18 4.1E-23 131.5 8.7 63 126-188 11-73 (77)
20 1wh7_A ZF-HD homeobox family p 99.8 3.4E-19 1.2E-23 136.1 5.6 60 125-185 14-78 (80)
21 2hdd_A Protein (engrailed home 99.8 4.5E-19 1.5E-23 128.0 5.9 58 128-185 3-60 (61)
22 1ig7_A Homeotic protein MSX-1; 99.8 6.3E-19 2.2E-23 125.7 6.5 57 129-185 1-57 (58)
23 1fjl_A Paired protein; DNA-bin 99.8 7.3E-19 2.5E-23 133.8 7.3 63 126-188 16-78 (81)
24 1zq3_P PRD-4, homeotic bicoid 99.8 8.4E-19 2.9E-23 129.3 6.8 62 128-189 2-63 (68)
25 1yz8_P Pituitary homeobox 2; D 99.8 3.3E-19 1.1E-23 131.4 4.3 63 127-189 2-64 (68)
26 1b8i_A Ultrabithorax, protein 99.8 6.1E-19 2.1E-23 134.5 5.7 61 127-187 19-79 (81)
27 1jgg_A Segmentation protein EV 99.8 8.9E-19 3.1E-23 126.0 6.2 58 129-186 2-59 (60)
28 2l7z_A Homeobox protein HOX-A1 99.8 8E-19 2.7E-23 131.3 6.1 62 127-188 6-67 (73)
29 1bw5_A ISL-1HD, insulin gene e 99.8 5.8E-19 2E-23 129.3 5.2 61 127-187 2-62 (66)
30 2da4_A Hypothetical protein DK 99.8 5.4E-19 1.8E-23 134.2 5.1 62 126-187 6-71 (80)
31 1ahd_P Antennapedia protein mu 99.8 7.4E-19 2.5E-23 129.8 5.5 61 128-188 2-62 (68)
32 2k40_A Homeobox expressed in E 99.7 7.4E-19 2.5E-23 129.1 5.3 63 128-190 1-63 (67)
33 3nar_A ZHX1, zinc fingers and 99.7 8.1E-19 2.8E-23 137.9 5.7 64 126-189 23-86 (96)
34 2r5y_A Homeotic protein sex co 99.7 8.4E-19 2.9E-23 135.5 5.6 61 127-187 27-87 (88)
35 1uhs_A HOP, homeodomain only p 99.7 1.5E-18 5.2E-23 129.2 6.7 59 129-187 2-61 (72)
36 1ftt_A TTF-1 HD, thyroid trans 99.7 1.4E-18 4.8E-23 128.2 6.4 61 128-188 2-62 (68)
37 2m0c_A Homeobox protein arista 99.7 1.6E-18 5.5E-23 129.5 6.7 63 126-188 7-69 (75)
38 2hi3_A Homeodomain-only protei 99.7 2.4E-18 8.3E-23 128.6 6.9 60 128-187 2-62 (73)
39 3rkq_A Homeobox protein NKX-2. 99.7 2E-18 6.8E-23 122.6 6.1 57 128-184 2-58 (58)
40 2da5_A Zinc fingers and homeob 99.7 2.5E-18 8.7E-23 129.3 6.6 61 129-189 8-68 (75)
41 3a02_A Homeobox protein arista 99.7 1.9E-18 6.5E-23 124.3 5.3 57 131-187 2-58 (60)
42 1akh_A Protein (mating-type pr 99.7 1.8E-18 6.2E-23 124.5 5.1 58 127-184 4-61 (61)
43 3a03_A T-cell leukemia homeobo 99.7 2.7E-18 9.3E-23 122.0 5.9 54 133-186 2-55 (56)
44 2ecc_A Homeobox and leucine zi 99.7 3E-18 1E-22 129.8 6.4 59 130-188 5-63 (76)
45 1x2n_A Homeobox protein pknox1 99.7 5.9E-18 2E-22 126.2 7.2 63 126-188 5-70 (73)
46 2ly9_A Zinc fingers and homeob 99.7 4.8E-18 1.6E-22 126.9 6.1 63 127-189 5-67 (74)
47 2dn0_A Zinc fingers and homeob 99.7 3.8E-18 1.3E-22 128.4 5.4 61 128-188 8-68 (76)
48 1puf_B PRE-B-cell leukemia tra 99.7 8.7E-18 3E-22 125.3 6.7 63 129-191 2-67 (73)
49 2cuf_A FLJ21616 protein; homeo 99.7 8.2E-18 2.8E-22 131.8 6.8 63 126-188 5-82 (95)
50 2ecb_A Zinc fingers and homeob 99.7 7.7E-18 2.6E-22 131.2 5.2 58 132-189 15-72 (89)
51 1b72_B Protein (PBX1); homeodo 99.7 2.2E-17 7.5E-22 127.0 7.1 61 129-189 2-65 (87)
52 1du6_A PBX1, homeobox protein 99.7 7.8E-18 2.7E-22 122.4 4.2 59 127-185 2-63 (64)
53 1k61_A Mating-type protein alp 99.7 1.9E-17 6.4E-22 118.9 6.0 56 131-186 1-59 (60)
54 2cqx_A LAG1 longevity assuranc 99.7 6.6E-18 2.3E-22 126.4 3.7 59 128-186 8-67 (72)
55 2xsd_C POU domain, class 3, tr 99.7 9.6E-18 3.3E-22 144.0 5.0 64 125-188 96-159 (164)
56 2dmn_A Homeobox protein TGIF2L 99.7 3.3E-17 1.1E-21 125.6 7.1 62 127-188 6-70 (83)
57 1au7_A Protein PIT-1, GHF-1; c 99.7 2.1E-17 7E-22 139.3 5.4 61 126-186 85-145 (146)
58 1e3o_C Octamer-binding transcr 99.7 2.5E-17 8.6E-22 140.6 5.3 61 126-186 99-159 (160)
59 2l9r_A Homeobox protein NKX-3. 99.7 1.7E-17 5.9E-22 123.4 3.7 58 133-190 9-66 (69)
60 2da6_A Hepatocyte nuclear fact 99.7 7.9E-17 2.7E-21 128.3 7.8 62 126-187 4-86 (102)
61 2dmp_A Zinc fingers and homeob 99.7 8.8E-17 3E-21 124.8 7.7 58 131-188 16-73 (89)
62 1le8_B Mating-type protein alp 99.7 3.3E-17 1.1E-21 125.4 5.1 61 129-189 3-66 (83)
63 1wi3_A DNA-binding protein SAT 99.7 6.2E-17 2.1E-21 119.6 6.3 60 125-184 4-64 (71)
64 1mnm_C Protein (MAT alpha-2 tr 99.7 6.8E-17 2.3E-21 124.5 6.5 59 127-185 26-87 (87)
65 3nau_A Zinc fingers and homeob 99.7 1E-16 3.6E-21 118.0 5.6 53 135-187 11-63 (66)
66 3d1n_I POU domain, class 6, tr 99.6 1.2E-16 4.1E-21 135.1 6.7 60 126-185 91-150 (151)
67 2e19_A Transcription factor 8; 99.6 1.1E-16 3.8E-21 117.1 5.1 55 132-186 7-61 (64)
68 1lfb_A Liver transcription fac 99.6 7.3E-17 2.5E-21 127.9 4.1 64 126-189 7-91 (99)
69 1x2m_A LAG1 longevity assuranc 99.6 8.2E-17 2.8E-21 118.1 3.7 49 137-185 9-58 (64)
70 3l1p_A POU domain, class 5, tr 99.6 8.4E-17 2.9E-21 136.8 3.9 59 127-185 95-153 (155)
71 2d5v_A Hepatocyte nuclear fact 99.6 4.1E-16 1.4E-20 133.2 4.6 62 126-187 95-156 (164)
72 3k2a_A Homeobox protein MEIS2; 99.6 8E-16 2.7E-20 113.4 5.1 59 134-192 4-65 (67)
73 1ic8_A Hepatocyte nuclear fact 99.4 2.1E-14 7.3E-19 126.4 2.4 60 126-185 113-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.4 3.4E-13 1.2E-17 104.8 6.0 55 133-187 10-67 (89)
75 2da7_A Zinc finger homeobox pr 99.4 3.9E-13 1.3E-17 99.8 4.8 46 137-182 14-59 (71)
76 2h8r_A Hepatocyte nuclear fact 99.3 7.8E-13 2.7E-17 118.2 4.7 59 125-183 139-218 (221)
77 1mh3_A Maltose binding-A1 home 99.3 1.6E-12 5.6E-17 122.5 3.8 56 129-184 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.8 1.7E-10 5.9E-15 75.5 -1.1 25 170-194 1-25 (37)
79 2ys9_A Homeobox and leucine zi 95.2 0.013 4.6E-07 43.0 3.1 40 139-178 17-56 (70)
80 2ecc_A Homeobox and leucine zi 94.9 0.0003 1E-08 52.8 -6.4 46 56-101 12-58 (76)
81 2e19_A Transcription factor 8; 94.4 0.00046 1.6E-08 49.7 -6.4 47 56-102 12-59 (64)
82 2djn_A Homeobox protein DLX-5; 94.0 0.00088 3E-08 48.6 -5.6 45 58-102 18-63 (70)
83 3nau_A Zinc fingers and homeob 93.8 0.00052 1.8E-08 50.2 -7.0 46 54-99 11-57 (66)
84 2ecb_A Zinc fingers and homeob 93.6 0.00071 2.4E-08 52.1 -7.0 45 56-100 20-65 (89)
85 2cra_A Homeobox protein HOX-B1 93.6 0.00079 2.7E-08 48.9 -6.6 45 58-102 18-63 (70)
86 1du6_A PBX1, homeobox protein 93.5 0.0019 6.6E-08 45.8 -4.5 44 58-101 14-61 (64)
87 1yz8_P Pituitary homeobox 2; D 93.4 0.0022 7.4E-08 46.2 -4.4 44 57-100 13-57 (68)
88 2dmp_A Zinc fingers and homeob 93.3 0.00052 1.8E-08 52.5 -8.2 48 55-102 21-69 (89)
89 2dms_A Homeobox protein OTX2; 93.2 0.00062 2.1E-08 50.7 -7.8 45 58-102 18-63 (80)
90 1wi3_A DNA-binding protein SAT 93.2 0.0012 4E-08 48.7 -6.0 42 57-98 17-60 (71)
91 1wh5_A ZF-HD homeobox family p 93.0 0.0018 6.1E-08 48.6 -5.5 45 58-102 28-77 (80)
92 2l9r_A Homeobox protein NKX-3. 92.9 0.0014 4.7E-08 48.1 -6.2 50 53-102 10-60 (69)
93 1akh_A Protein (mating-type pr 92.8 0.00058 2E-08 48.1 -8.0 44 57-100 15-59 (61)
94 1bw5_A ISL-1HD, insulin gene e 92.8 0.00067 2.3E-08 48.6 -7.9 46 57-102 13-59 (66)
95 2cue_A Paired box protein PAX6 92.7 0.0023 7.7E-08 47.7 -5.3 45 58-102 18-63 (80)
96 2da1_A Alpha-fetoprotein enhan 92.5 0.0013 4.6E-08 47.5 -6.6 44 58-101 18-62 (70)
97 1hjb_A Ccaat/enhancer binding 92.5 0.25 8.6E-06 37.7 5.9 42 180-221 29-74 (87)
98 1wh7_A ZF-HD homeobox family p 92.5 0.0043 1.5E-07 46.6 -4.1 44 58-102 28-77 (80)
99 1ig7_A Homeotic protein MSX-1; 92.5 0.0014 4.9E-08 45.5 -6.3 43 57-99 10-53 (58)
100 2dn0_A Zinc fingers and homeob 92.5 0.00098 3.4E-08 49.2 -7.6 47 57-103 18-65 (76)
101 2da2_A Alpha-fetoprotein enhan 92.4 0.0016 5.3E-08 47.1 -6.4 45 58-102 18-63 (70)
102 3a03_A T-cell leukemia homeobo 92.4 0.001 3.5E-08 46.2 -7.1 44 57-100 7-51 (56)
103 2vi6_A Homeobox protein nanog; 92.4 0.00097 3.3E-08 47.2 -7.3 45 57-101 13-58 (62)
104 2hdd_A Protein (engrailed home 92.3 0.0012 3.9E-08 46.6 -7.1 43 57-99 13-56 (61)
105 2da5_A Zinc fingers and homeob 92.2 0.0015 5.1E-08 48.1 -6.8 47 56-102 16-63 (75)
106 2kt0_A Nanog, homeobox protein 92.2 0.0018 6E-08 48.5 -6.6 45 58-102 33-78 (84)
107 2r5y_A Homeotic protein sex co 92.2 0.0051 1.7E-07 46.5 -4.1 43 58-100 39-82 (88)
108 2jn6_A Protein CGL2762, transp 92.1 0.054 1.8E-06 40.8 1.7 44 132-179 3-47 (97)
109 3a02_A Homeobox protein arista 92.1 0.0012 4.1E-08 46.3 -7.1 45 57-101 9-54 (60)
110 2da6_A Hepatocyte nuclear fact 92.1 0.003 1E-07 49.9 -5.6 53 42-102 9-83 (102)
111 3rkq_A Homeobox protein NKX-2. 91.9 0.002 6.9E-08 44.5 -6.0 43 57-99 12-55 (58)
112 1b8i_A Ultrabithorax, protein 91.9 0.0024 8.2E-08 47.7 -6.1 43 58-100 31-74 (81)
113 2dmq_A LIM/homeobox protein LH 91.9 0.0021 7.3E-08 47.6 -6.4 44 58-101 18-62 (80)
114 2k40_A Homeobox expressed in E 91.9 0.0023 7.7E-08 45.9 -6.0 45 57-101 11-56 (67)
115 2dmu_A Homeobox protein goosec 91.7 0.0016 5.3E-08 47.2 -7.1 43 58-100 18-61 (70)
116 2h1k_A IPF-1, pancreatic and d 91.7 0.0015 5.1E-08 46.4 -7.1 44 57-100 13-57 (63)
117 2e1o_A Homeobox protein PRH; D 91.7 0.0021 7.3E-08 46.5 -6.4 43 58-100 18-61 (70)
118 1ahd_P Antennapedia protein mu 91.6 0.0019 6.7E-08 46.6 -6.6 45 57-101 12-57 (68)
119 2da3_A Alpha-fetoprotein enhan 91.6 0.002 7E-08 47.6 -6.7 44 58-101 28-72 (80)
120 1zq3_P PRD-4, homeotic bicoid 91.6 0.0025 8.4E-08 46.0 -6.1 45 57-101 12-57 (68)
121 1jgg_A Segmentation protein EV 91.6 0.0015 5.2E-08 45.8 -7.1 43 57-99 11-54 (60)
122 3a01_A Homeodomain-containing 91.5 0.0073 2.5E-07 46.3 -3.9 44 58-101 28-72 (93)
123 2l7z_A Homeobox protein HOX-A1 91.3 0.0025 8.5E-08 46.7 -6.4 45 58-102 18-63 (73)
124 1nk2_P Homeobox protein VND; h 91.3 0.0027 9.2E-08 46.9 -6.3 44 58-101 20-64 (77)
125 1k61_A Mating-type protein alp 90.8 0.0021 7.3E-08 45.0 -6.9 44 57-100 8-55 (60)
126 2dmt_A Homeobox protein BARH-l 90.6 0.0026 8.8E-08 47.3 -7.1 45 58-102 28-73 (80)
127 2hi3_A Homeodomain-only protei 90.5 0.0029 1E-07 46.2 -6.7 45 57-101 12-58 (73)
128 1lfb_A Liver transcription fac 90.4 0.0064 2.2E-07 47.5 -5.2 45 58-102 20-86 (99)
129 1puf_B PRE-B-cell leukemia tra 90.3 0.0042 1.4E-07 45.2 -6.0 45 57-101 11-59 (73)
130 1ftt_A TTF-1 HD, thyroid trans 90.3 0.0025 8.6E-08 45.9 -7.1 45 57-101 12-57 (68)
131 2ly9_A Zinc fingers and homeob 90.2 0.0023 8E-08 46.7 -7.4 46 58-103 17-63 (74)
132 1puf_A HOX-1.7, homeobox prote 89.9 0.0031 1E-07 46.6 -7.1 43 58-100 24-67 (77)
133 1b72_B Protein (PBX1); homeodo 89.9 0.0052 1.8E-07 46.2 -6.0 46 57-102 11-60 (87)
134 2cqx_A LAG1 longevity assuranc 89.7 0.0054 1.8E-07 45.0 -5.8 46 57-102 18-65 (72)
135 1fjl_A Paired protein; DNA-bin 89.5 0.0035 1.2E-07 46.6 -7.1 43 58-100 29-72 (81)
136 1gu4_A CAAT/enhancer binding p 89.4 0.77 2.6E-05 34.3 5.8 41 179-219 28-72 (78)
137 1b72_A Protein (homeobox prote 89.4 0.006 2.1E-07 47.0 -6.0 43 58-100 45-88 (97)
138 1uhs_A HOP, homeodomain only p 89.1 0.0046 1.6E-07 45.0 -6.6 45 57-101 11-57 (72)
139 2cuf_A FLJ21616 protein; homeo 89.0 0.0038 1.3E-07 47.9 -7.4 44 58-101 18-77 (95)
140 3k2a_A Homeobox protein MEIS2; 88.8 0.0049 1.7E-07 44.5 -6.5 44 57-100 8-55 (67)
141 2m0c_A Homeobox protein arista 88.6 0.0042 1.5E-07 45.2 -7.1 44 58-101 20-64 (75)
142 2da4_A Hypothetical protein DK 88.4 0.003 1E-07 46.9 -8.2 45 57-101 18-67 (80)
143 1le8_B Mating-type protein alp 88.2 0.0053 1.8E-07 46.0 -6.9 47 57-103 12-62 (83)
144 2d5v_A Hepatocyte nuclear fact 87.6 0.0091 3.1E-07 50.1 -6.6 46 58-103 108-154 (164)
145 2da7_A Zinc finger homeobox pr 87.2 0.006 2.1E-07 45.1 -6.9 45 56-100 14-59 (71)
146 1x2n_A Homeobox protein pknox1 86.9 0.0064 2.2E-07 44.2 -7.0 43 58-100 18-64 (73)
147 1mnm_C Protein (MAT alpha-2 tr 86.8 0.0074 2.5E-07 45.5 -6.9 43 58-100 38-84 (87)
148 1x2m_A LAG1 longevity assuranc 86.7 0.01 3.4E-07 42.9 -5.9 51 52-102 5-57 (64)
149 2dgc_A Protein (GCN4); basic d 84.6 1.9 6.7E-05 30.6 5.4 30 190-219 30-59 (63)
150 2dmn_A Homeobox protein TGIF2L 84.3 0.011 3.8E-07 44.3 -7.0 44 58-101 18-65 (83)
151 3nar_A ZHX1, zinc fingers and 84.0 0.012 4.1E-07 45.2 -7.1 45 58-102 36-81 (96)
152 2h8r_A Hepatocyte nuclear fact 83.5 0.018 6.3E-07 51.2 -7.0 52 42-101 145-218 (221)
153 3l1p_A POU domain, class 5, tr 82.9 0.04 1.4E-06 46.0 -4.9 43 58-100 107-150 (155)
154 1au7_A Protein PIT-1, GHF-1; c 82.7 0.013 4.4E-07 48.6 -7.9 44 58-101 98-142 (146)
155 1ic8_A Hepatocyte nuclear fact 82.2 0.016 5.5E-07 50.5 -7.8 43 58-100 126-190 (194)
156 2yy0_A C-MYC-binding protein; 82.0 2 6.9E-05 29.6 4.5 30 189-218 18-47 (53)
157 1ci6_A Transcription factor AT 80.9 3.8 0.00013 29.0 5.7 31 189-219 29-59 (63)
158 3d1n_I POU domain, class 6, tr 80.6 0.023 7.8E-07 47.2 -7.1 43 58-100 104-147 (151)
159 1hlv_A CENP-B, major centromer 79.8 2.9 0.0001 32.4 5.4 50 130-182 3-52 (131)
160 1e3o_C Octamer-binding transcr 79.7 0.027 9.1E-07 47.3 -7.1 43 58-100 112-155 (160)
161 2xsd_C POU domain, class 3, tr 79.5 0.027 9.3E-07 47.6 -7.1 45 58-102 110-155 (164)
162 1t2k_D Cyclic-AMP-dependent tr 77.9 5.9 0.0002 27.6 5.9 29 189-217 28-56 (61)
163 2lk2_A Homeobox protein TGIF1; 77.6 0.019 6.5E-07 44.2 -7.8 45 58-102 16-64 (89)
164 1ci6_A Transcription factor AT 77.2 5.1 0.00018 28.3 5.5 30 189-218 22-51 (63)
165 2wt7_A Proto-oncogene protein 76.7 5.6 0.00019 28.0 5.5 25 193-217 26-50 (63)
166 1dh3_A Transcription factor CR 76.4 5.6 0.00019 27.4 5.4 37 180-219 15-51 (55)
167 3m48_A General control protein 75.8 3.8 0.00013 25.6 3.8 26 195-220 5-30 (33)
168 2wt7_A Proto-oncogene protein 73.7 8.8 0.0003 26.9 5.9 40 180-219 20-59 (63)
169 2oxj_A Hybrid alpha/beta pepti 73.5 4.7 0.00016 25.3 3.8 26 195-220 6-31 (34)
170 2glo_A Brinker CG9653-PA; prot 72.8 3.3 0.00011 28.1 3.4 45 132-177 3-47 (59)
171 2elh_A CG11849-PA, LD40883P; s 71.8 7.8 0.00027 28.3 5.6 45 128-177 16-60 (87)
172 1uii_A Geminin; human, DNA rep 70.2 10 0.00034 28.6 5.7 35 187-221 43-77 (83)
173 1gd2_E Transcription factor PA 68.7 8.1 0.00028 28.1 4.9 31 187-217 33-63 (70)
174 1jnm_A Proto-oncogene C-JUN; B 67.0 6.9 0.00024 27.3 4.1 27 192-218 24-50 (62)
175 1mh3_A Maltose binding-A1 home 66.9 0.14 4.8E-06 47.4 -6.3 44 58-101 376-420 (421)
176 1t6f_A Geminin; coiled-coil, c 66.5 11 0.00036 24.0 4.3 30 190-219 7-36 (37)
177 2wt7_B Transcription factor MA 65.5 15 0.00053 27.9 6.1 53 166-218 17-83 (90)
178 1dip_A Delta-sleep-inducing pe 65.3 33 0.0011 25.2 7.5 33 189-221 14-46 (78)
179 1hjb_A Ccaat/enhancer binding 65.2 13 0.00044 28.1 5.6 36 184-219 30-65 (87)
180 1gu4_A CAAT/enhancer binding p 64.1 15 0.0005 27.2 5.6 35 184-218 30-64 (78)
181 1tc3_C Protein (TC3 transposas 63.4 7.7 0.00026 23.8 3.6 40 134-178 5-44 (51)
182 1t2k_D Cyclic-AMP-dependent tr 63.0 17 0.00059 25.1 5.6 29 191-219 23-51 (61)
183 1jnm_A Proto-oncogene C-JUN; B 61.3 19 0.00066 25.0 5.6 40 180-219 19-58 (62)
184 3c3g_A Alpha/beta peptide with 59.5 13 0.00046 23.1 3.8 26 195-220 5-30 (33)
185 1jko_C HIN recombinase, DNA-in 58.9 4 0.00014 25.7 1.5 41 134-179 5-45 (52)
186 1p4w_A RCSB; solution structur 58.6 20 0.00069 27.0 5.8 48 132-185 32-79 (99)
187 1je8_A Nitrate/nitrite respons 58.4 14 0.00049 26.5 4.7 48 132-185 19-66 (82)
188 3c3f_A Alpha/beta peptide with 58.4 14 0.00049 23.0 3.8 26 195-220 6-31 (34)
189 3hug_A RNA polymerase sigma fa 58.2 14 0.00047 27.0 4.6 47 134-185 37-83 (92)
190 1fse_A GERE; helix-turn-helix 56.2 15 0.00052 25.0 4.4 48 132-185 9-56 (74)
191 3c57_A Two component transcrip 56.1 11 0.00038 27.9 3.8 47 133-185 26-72 (95)
192 1iuf_A Centromere ABP1 protein 53.8 19 0.00064 28.8 5.1 52 129-180 6-61 (144)
193 1uo4_A General control protein 52.6 20 0.00069 22.4 3.8 26 195-220 6-31 (34)
194 2o8x_A Probable RNA polymerase 51.9 12 0.0004 25.3 3.1 47 134-185 15-61 (70)
195 1kd8_B GABH BLL, GCN4 acid bas 50.7 26 0.00089 22.2 4.2 27 194-220 5-31 (36)
196 3s9g_A Protein hexim1; cyclin 50.2 37 0.0013 26.3 5.9 32 187-218 62-93 (104)
197 1s7o_A Hypothetical UPF0122 pr 50.0 37 0.0013 26.1 6.1 47 134-185 22-68 (113)
198 2bni_A General control protein 49.2 25 0.00084 22.0 3.8 26 195-220 6-31 (34)
199 2lv7_A Calcium-binding protein 48.3 31 0.0011 25.6 5.3 48 130-177 25-79 (100)
200 1x3u_A Transcriptional regulat 48.2 21 0.00072 24.7 4.1 46 134-185 16-61 (79)
201 1l8d_A DNA double-strand break 47.7 31 0.0011 26.2 5.3 11 235-245 47-57 (112)
202 1go4_E MAD1 (mitotic arrest de 47.6 23 0.00078 27.5 4.4 28 190-217 12-39 (100)
203 1wlq_A Geminin; coiled-coil; 2 45.8 39 0.0013 25.3 5.2 34 187-220 35-68 (83)
204 1xsv_A Hypothetical UPF0122 pr 45.6 60 0.0021 24.8 6.7 47 134-185 25-71 (113)
205 4dzn_A Coiled-coil peptide CC- 43.6 44 0.0015 20.2 4.2 26 192-217 4-29 (33)
206 2rnj_A Response regulator prot 43.5 21 0.00072 25.9 3.6 47 133-185 28-74 (91)
207 2wvr_A Geminin; DNA replicatio 43.2 41 0.0014 29.3 5.7 34 187-220 112-145 (209)
208 1kd8_A GABH AIV, GCN4 acid bas 43.1 35 0.0012 21.6 3.9 26 195-220 6-31 (36)
209 2p7v_B Sigma-70, RNA polymeras 43.0 26 0.0009 23.8 3.8 51 134-185 5-55 (68)
210 3mzy_A RNA polymerase sigma-H 42.7 29 0.00098 26.7 4.5 45 134-184 109-153 (164)
211 2rn7_A IS629 ORFA; helix, all 42.0 29 0.001 25.7 4.2 47 132-178 4-53 (108)
212 1nkp_A C-MYC, MYC proto-oncoge 41.9 44 0.0015 24.8 5.2 33 185-217 54-86 (88)
213 3v86_A De novo design helix; c 41.0 31 0.0011 19.9 3.1 23 194-216 4-26 (27)
214 3i5g_B Myosin regulatory light 41.0 46 0.0016 26.2 5.5 42 130-171 5-51 (153)
215 1ku3_A Sigma factor SIGA; heli 40.2 41 0.0014 23.1 4.5 48 134-184 10-59 (73)
216 1nlw_A MAD protein, MAX dimeri 39.8 41 0.0014 24.7 4.6 23 195-217 52-74 (80)
217 1tty_A Sigma-A, RNA polymerase 39.1 61 0.0021 23.2 5.5 49 134-185 18-68 (87)
218 2hy6_A General control protein 39.1 48 0.0017 20.7 4.0 25 195-219 6-30 (34)
219 2wq1_A General control protein 37.8 60 0.0021 20.1 4.3 26 195-220 5-30 (33)
220 2dgc_A Protein (GCN4); basic d 37.8 38 0.0013 23.7 4.0 29 186-214 33-61 (63)
221 3he5_B Synzip2; heterodimeric 37.6 71 0.0024 21.1 4.9 27 187-213 21-47 (52)
222 3iv1_A Tumor susceptibility ge 36.1 80 0.0027 23.3 5.6 39 178-216 13-51 (78)
223 3gpv_A Transcriptional regulat 35.3 1.1E+02 0.0039 24.3 7.1 71 132-217 52-122 (148)
224 2yy0_A C-MYC-binding protein; 34.1 51 0.0018 22.4 4.0 24 190-213 26-49 (53)
225 1q06_A Transcriptional regulat 33.7 1.3E+02 0.0046 23.5 7.2 73 132-219 36-108 (135)
226 3ulq_B Transcriptional regulat 33.3 57 0.0019 23.9 4.5 47 130-182 25-71 (90)
227 1rp3_A RNA polymerase sigma fa 32.6 28 0.00094 28.8 3.0 47 134-185 187-233 (239)
228 1nkp_B MAX protein, MYC proto- 32.1 55 0.0019 23.7 4.2 23 195-217 52-74 (83)
229 3m91_A Proteasome-associated A 32.0 1E+02 0.0036 20.8 5.2 31 187-217 13-43 (51)
230 3m9b_A Proteasome-associated A 31.3 67 0.0023 28.8 5.4 33 185-217 63-95 (251)
231 1fi6_A EH domain protein REPS1 31.1 40 0.0014 24.2 3.3 44 134-177 2-50 (92)
232 1p9i_A Cortexillin I/GCN4 hybr 30.5 68 0.0023 19.1 3.5 24 195-218 4-27 (31)
233 1gd2_E Transcription factor PA 30.1 46 0.0016 24.0 3.4 43 176-218 14-57 (70)
234 1a93_B MAX protein, coiled coi 30.1 57 0.002 20.4 3.3 20 194-213 11-30 (34)
235 2pmy_A RAS and EF-hand domain- 30.0 29 0.00097 24.6 2.3 45 133-177 19-68 (91)
236 3gp4_A Transcriptional regulat 30.0 2.1E+02 0.007 22.7 8.9 34 132-178 38-71 (142)
237 2x48_A CAG38821; archeal virus 29.0 40 0.0014 21.7 2.7 36 137-177 18-53 (55)
238 3ra3_B P2F; coiled coil domain 28.6 80 0.0027 18.4 3.5 13 201-213 11-23 (28)
239 1fmh_B General control protein 28.3 1E+02 0.0035 18.6 4.1 27 192-218 3-29 (33)
240 1q08_A Zn(II)-responsive regul 28.3 1.5E+02 0.0052 21.4 6.2 60 158-218 8-67 (99)
241 1fmh_A General control protein 28.0 1E+02 0.0035 18.5 4.1 26 193-218 4-29 (33)
242 2jpc_A SSRB; DNA binding prote 27.9 29 0.00099 22.7 1.9 27 159-185 17-43 (61)
243 2xi8_A Putative transcription 27.7 20 0.0007 23.4 1.1 23 158-180 17-39 (66)
244 1u78_A TC3 transposase, transp 27.4 63 0.0022 24.4 4.1 42 133-179 5-46 (141)
245 1c07_A Protein (epidermal grow 27.4 41 0.0014 24.3 2.8 43 135-177 4-51 (95)
246 2vz4_A Tipal, HTH-type transcr 27.3 1.4E+02 0.0046 22.4 5.9 66 132-218 37-102 (108)
247 2jee_A YIIU; FTSZ, septum, coi 27.3 88 0.003 23.3 4.5 16 191-206 28-43 (81)
248 3clo_A Transcriptional regulat 26.6 85 0.0029 27.0 5.2 47 133-185 196-242 (258)
249 2r1j_L Repressor protein C2; p 26.6 22 0.00076 23.3 1.1 23 158-180 21-43 (68)
250 3bd1_A CRO protein; transcript 26.4 24 0.00081 24.6 1.3 23 158-180 14-36 (79)
251 2rgt_A Fusion of LIM/homeobox 26.2 1.3 4.4E-05 36.7 -6.5 29 127-155 135-163 (169)
252 1or7_A Sigma-24, RNA polymeras 26.1 52 0.0018 26.2 3.5 46 135-185 141-186 (194)
253 1am9_A Srebp-1A, protein (ster 25.5 82 0.0028 22.9 4.2 25 195-219 55-79 (82)
254 3hh0_A Transcriptional regulat 25.4 1.7E+02 0.0058 23.3 6.5 68 132-217 40-107 (146)
255 2q0o_A Probable transcriptiona 25.0 1.1E+02 0.0038 25.7 5.6 48 132-185 173-220 (236)
256 1zug_A Phage 434 CRO protein; 25.0 24 0.00082 23.4 1.0 24 158-181 19-42 (71)
257 3bs3_A Putative DNA-binding pr 24.5 26 0.00089 23.7 1.2 23 158-180 26-48 (76)
258 2q1z_A RPOE, ECF SIGE; ECF sig 24.1 38 0.0013 26.9 2.2 46 135-185 136-181 (184)
259 2k27_A Paired box protein PAX- 24.0 1.7E+02 0.0057 22.9 6.2 59 114-177 5-63 (159)
260 2q24_A Putative TETR family tr 23.7 33 0.0011 27.1 1.8 41 140-182 21-61 (194)
261 2r2v_A GCN4 leucine zipper; co 23.7 1.4E+02 0.0047 18.6 4.2 25 195-219 6-30 (34)
262 3lph_A Protein REV; helix-loop 23.6 45 0.0015 24.3 2.3 37 140-190 18-54 (72)
263 1deb_A APC protein, adenomatou 23.3 1E+02 0.0034 21.0 3.8 23 192-214 5-27 (54)
264 1adr_A P22 C2 repressor; trans 22.8 29 0.00098 23.4 1.1 23 158-180 21-43 (76)
265 1r8d_A Transcription activator 22.8 2.4E+02 0.0081 20.9 6.7 66 132-218 38-103 (109)
266 1nlw_A MAD protein, MAX dimeri 22.8 1E+02 0.0035 22.4 4.2 36 180-215 44-79 (80)
267 1dh3_A Transcription factor CR 22.7 57 0.0019 22.2 2.6 21 197-217 22-42 (55)
268 1wt6_A Myotonin-protein kinase 22.3 1.9E+02 0.0064 21.5 5.5 28 191-218 46-73 (81)
269 2b5a_A C.BCLI; helix-turn-heli 22.1 30 0.001 23.4 1.1 23 158-180 26-48 (77)
270 2wuj_A Septum site-determining 22.0 72 0.0025 21.8 3.0 24 194-217 31-54 (57)
271 3omt_A Uncharacterized protein 21.9 32 0.0011 23.3 1.2 23 158-180 24-46 (73)
272 3t72_q RNA polymerase sigma fa 21.7 2E+02 0.0069 21.4 5.9 50 134-184 19-68 (99)
273 1nkp_B MAX protein, MYC proto- 21.3 1.1E+02 0.0039 21.9 4.2 32 185-216 49-80 (83)
274 1r69_A Repressor protein CI; g 21.2 32 0.0011 22.6 1.1 24 158-181 17-40 (69)
275 3m9b_A Proteasome-associated A 20.8 76 0.0026 28.4 3.7 34 184-217 55-88 (251)
276 2lhi_A Calmodulin, serine/thre 20.7 71 0.0024 25.6 3.3 38 133-170 3-45 (176)
277 1y7y_A C.AHDI; helix-turn-heli 20.4 35 0.0012 22.8 1.1 23 158-180 29-51 (74)
278 1l3l_A Transcriptional activat 20.4 1.1E+02 0.0037 25.8 4.5 47 132-184 171-217 (234)
279 1j7q_A CAVP, calcium vector pr 20.3 1.4E+02 0.0047 20.2 4.4 44 133-176 6-59 (86)
280 3trt_A Vimentin; cytoskeleton, 20.2 2.3E+02 0.0079 19.8 7.3 13 169-181 26-38 (77)
281 1pdn_C Protein (PRD paired); p 20.1 1.5E+02 0.0051 21.5 4.8 41 134-179 17-57 (128)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=7.7e-20 Score=139.02 Aligned_cols=63 Identities=30% Similarity=0.477 Sum_probs=59.4
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhh
Q 023113 125 AGDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 187 (287)
Q Consensus 125 ~~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq 187 (287)
.++.+|.|+.||..|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 346788899999999999999999999999999999999999999999999999999999864
No 2
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=8.6e-20 Score=138.16 Aligned_cols=63 Identities=29% Similarity=0.402 Sum_probs=59.5
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhh
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 188 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~ 188 (287)
.+.+|.|+.||.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+++.
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 467888999999999999999999999999999999999999999999999999999998653
No 3
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.79 E-value=1.6e-19 Score=136.26 Aligned_cols=66 Identities=32% Similarity=0.562 Sum_probs=61.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhhhh
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVD 191 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~~~ 191 (287)
.+.++.|+.||..|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+.+....
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~ 72 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKG 72 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcccc
Confidence 356788999999999999999999999999999999999999999999999999999999765543
No 4
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.78 E-value=8.1e-20 Score=132.28 Aligned_cols=61 Identities=31% Similarity=0.450 Sum_probs=53.7
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhh
Q 023113 127 DASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 187 (287)
Q Consensus 127 ~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq 187 (287)
+.++.|+.||..|+.+||..|..++||+..++.+||..+||++.+|++||||||+|+|++|
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 5678899999999999999999999999999999999999999999999999999999864
No 5
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=138.78 Aligned_cols=63 Identities=30% Similarity=0.447 Sum_probs=59.5
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhh
Q 023113 125 AGDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 187 (287)
Q Consensus 125 ~~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq 187 (287)
.++.+|.|+.||..|+.+||..|..++||+..++..||.+|||+++||+|||||||+|+|+++
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 346788899999999999999999999999999999999999999999999999999999865
No 6
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=1.1e-19 Score=134.66 Aligned_cols=62 Identities=26% Similarity=0.475 Sum_probs=59.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhh
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 187 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq 187 (287)
++.+++|+.||..|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 36788899999999999999999999999999999999999999999999999999999865
No 7
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=2.5e-19 Score=136.19 Aligned_cols=63 Identities=25% Similarity=0.459 Sum_probs=59.5
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhh
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 188 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~ 188 (287)
+..+|+|+.||.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 367888999999999999999999999999999999999999999999999999999999653
No 8
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-19 Score=132.96 Aligned_cols=62 Identities=32% Similarity=0.509 Sum_probs=59.0
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhh
Q 023113 127 DASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 188 (287)
Q Consensus 127 ~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~ 188 (287)
..+|+|+.||.+|+.+||..|..++||+..++.+||.+|||++.||++||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 57888999999999999999999999999999999999999999999999999999998653
No 9
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-19 Score=136.12 Aligned_cols=63 Identities=24% Similarity=0.365 Sum_probs=59.8
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhh
Q 023113 127 DASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 189 (287)
Q Consensus 127 ~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~ 189 (287)
+.+|.|+.||.+|+.+||..|..++||+..++..||.+|||+++||+|||||||+|+|++...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999999999999999999999999999997644
No 10
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.78 E-value=1.7e-19 Score=131.12 Aligned_cols=61 Identities=31% Similarity=0.530 Sum_probs=56.3
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhh
Q 023113 127 DASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 187 (287)
Q Consensus 127 ~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq 187 (287)
..+|.|+.||..|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4678899999999999999999999999999999999999999999999999999999853
No 11
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.78 E-value=1.7e-19 Score=137.66 Aligned_cols=61 Identities=11% Similarity=0.212 Sum_probs=57.7
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 125 AGDASRKKLRLSKEQSLLLEETFKE----HSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 125 ~~~~rrkRt~~T~~Ql~~Le~~F~~----~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
.++.+|+|+.||.+|+..||..|+. ++||+..+|++||.+|||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3467888999999999999999999 999999999999999999999999999999999875
No 12
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-19 Score=133.04 Aligned_cols=63 Identities=24% Similarity=0.394 Sum_probs=59.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhh
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 188 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~ 188 (287)
++.+++|++||.+|+.+||..|..++||+..++.+||.+|||++.||++||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 367888999999999999999999999999999999999999999999999999999998653
No 13
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=2e-19 Score=141.50 Aligned_cols=94 Identities=23% Similarity=0.387 Sum_probs=64.4
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q 023113 82 GVSSPNSTVSSISGKRSEREPIGDETEAERASCSRGSDDEDGGAGDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLAL 161 (287)
Q Consensus 82 ~~ssp~s~i~s~~~~~s~r~~~~~~~~~e~~~~s~~~~~~~~~~~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~L 161 (287)
++++|...|..|+.+.+........ ...+.+..+++|+.||..|+.+||..|..++||+..++.+|
T Consensus 2 ~~~~~~~~~~~W~~~~r~~~~~~~~--------------~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~L 67 (97)
T 1b72_A 2 EPNTPTARTFDWMKVKRNPPKTAKV--------------SEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEI 67 (97)
T ss_dssp ------CCCCGGGGC----------------------------------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred CCCCCCcccccccccccCCCCCCCC--------------CCCCCCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 3567788888899876643321110 00112357888999999999999999999999999999999
Q ss_pred HHHhCCCccchhhhhhhhhhHHHhhhhh
Q 023113 162 AKQLNLRPRQVEVWFQNRRARTKLKQTE 189 (287)
Q Consensus 162 A~~LgL~~rqVqvWFQNRRak~Krkq~~ 189 (287)
|.+|||+++||+|||||||+|+|+++.+
T Consensus 68 A~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 68 AATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 9999999999999999999999987643
No 14
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.78 E-value=3.1e-19 Score=139.68 Aligned_cols=66 Identities=27% Similarity=0.463 Sum_probs=61.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhhhh
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVD 191 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~~~ 191 (287)
.+.+++|+.||.+|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|++..+..
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 467888999999999999999999999999999999999999999999999999999999765543
No 15
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=2.3e-19 Score=136.30 Aligned_cols=64 Identities=27% Similarity=0.457 Sum_probs=60.2
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhh
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 189 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~ 189 (287)
++.+|+|++||.+|+.+||..|..++||+..++.+||.+|||++++|+|||||||+|+|+++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 3678889999999999999999999999999999999999999999999999999999997643
No 16
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=4.2e-19 Score=131.60 Aligned_cols=61 Identities=38% Similarity=0.633 Sum_probs=58.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhh
Q 023113 127 DASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 187 (287)
Q Consensus 127 ~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq 187 (287)
..+++|++||.+|+.+||..|..++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 5677899999999999999999999999999999999999999999999999999999864
No 17
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-19 Score=132.95 Aligned_cols=62 Identities=27% Similarity=0.428 Sum_probs=58.8
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhh
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 187 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq 187 (287)
++.+++|+.||.+|+.+||..|..++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 36788899999999999999999999999999999999999999999999999999999854
No 18
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=3.2e-19 Score=132.03 Aligned_cols=61 Identities=18% Similarity=0.361 Sum_probs=58.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhh
Q 023113 127 DASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 187 (287)
Q Consensus 127 ~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq 187 (287)
+.++.|+.||.+|+.+||..|..++||+..++.+||.+|||++.||++||||||+|+|++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 6788899999999999999999999999999999999999999999999999999999865
No 19
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.76 E-value=1.2e-18 Score=131.48 Aligned_cols=63 Identities=35% Similarity=0.542 Sum_probs=59.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhh
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 188 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~ 188 (287)
++.+++|+.||..|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+...
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 357888999999999999999999999999999999999999999999999999999998653
No 20
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.76 E-value=3.4e-19 Score=136.13 Aligned_cols=60 Identities=15% Similarity=0.301 Sum_probs=56.3
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 125 AGDASRKKLRLSKEQSLLLEETFKE-----HSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 125 ~~~~rrkRt~~T~~Ql~~Le~~F~~-----~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
..+.+|+|+.||.+|+..|| .|.. ++||+..+|++||.+|||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 34678889999999999999 7999 999999999999999999999999999999999875
No 21
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.76 E-value=4.5e-19 Score=127.96 Aligned_cols=58 Identities=31% Similarity=0.571 Sum_probs=53.3
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 128 ASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 128 ~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
.+|.|+.||..|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999987
No 22
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=6.3e-19 Score=125.72 Aligned_cols=57 Identities=32% Similarity=0.577 Sum_probs=55.2
Q ss_pred CCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 129 SRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 129 rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
+++|+.||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999987
No 23
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.76 E-value=7.3e-19 Score=133.80 Aligned_cols=63 Identities=32% Similarity=0.457 Sum_probs=59.2
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhh
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 188 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~ 188 (287)
++.+++|+.||..|+.+||..|..++||+..++..||.+|||+++||++||||||+|+|++..
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 467888999999999999999999999999999999999999999999999999999999654
No 24
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.76 E-value=8.4e-19 Score=129.34 Aligned_cols=62 Identities=29% Similarity=0.500 Sum_probs=58.6
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhh
Q 023113 128 ASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 189 (287)
Q Consensus 128 ~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~ 189 (287)
.++.|+.||..|+.+||..|..++||+..++..||..|||++++|+|||||||+|+|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 47889999999999999999999999999999999999999999999999999999996644
No 25
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.76 E-value=3.3e-19 Score=131.42 Aligned_cols=63 Identities=27% Similarity=0.423 Sum_probs=59.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhh
Q 023113 127 DASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 189 (287)
Q Consensus 127 ~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~ 189 (287)
+.++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|+++..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 578889999999999999999999999999999999999999999999999999999987643
No 26
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.75 E-value=6.1e-19 Score=134.51 Aligned_cols=61 Identities=31% Similarity=0.558 Sum_probs=54.7
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhh
Q 023113 127 DASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 187 (287)
Q Consensus 127 ~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq 187 (287)
..+|.|+.||..|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|++.
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 5678899999999999999999999999999999999999999999999999999999864
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=8.9e-19 Score=125.97 Aligned_cols=58 Identities=33% Similarity=0.532 Sum_probs=55.5
Q ss_pred CCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhh
Q 023113 129 SRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 186 (287)
Q Consensus 129 rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krk 186 (287)
+|.|+.||.+|+.+||..|..++||+..++.+||.++||++.||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999985
No 28
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.75 E-value=8e-19 Score=131.28 Aligned_cols=62 Identities=27% Similarity=0.475 Sum_probs=58.9
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhh
Q 023113 127 DASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 188 (287)
Q Consensus 127 ~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~ 188 (287)
+.+++|+.||..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 57888999999999999999999999999999999999999999999999999999998643
No 29
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.75 E-value=5.8e-19 Score=129.27 Aligned_cols=61 Identities=26% Similarity=0.461 Sum_probs=58.1
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhh
Q 023113 127 DASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 187 (287)
Q Consensus 127 ~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq 187 (287)
+.+|.|+.||.+|+.+||..|..++||+..++..||.++||++.||++||||||+|+|+++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4678899999999999999999999999999999999999999999999999999999865
No 30
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.4e-19 Score=134.24 Aligned_cols=62 Identities=21% Similarity=0.339 Sum_probs=58.8
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhh
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEH----STLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 187 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~----~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq 187 (287)
++.+|+|+.||.+|+.+||.+|+.+ +||+..++++||.+|||+++||+|||||||+|+|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 3678889999999999999999999 9999999999999999999999999999999999854
No 31
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.75 E-value=7.4e-19 Score=129.75 Aligned_cols=61 Identities=31% Similarity=0.564 Sum_probs=57.9
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhh
Q 023113 128 ASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 188 (287)
Q Consensus 128 ~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~ 188 (287)
.+|.|+.||..|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4678999999999999999999999999999999999999999999999999999998653
No 32
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.75 E-value=7.4e-19 Score=129.08 Aligned_cols=63 Identities=30% Similarity=0.475 Sum_probs=59.1
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhhh
Q 023113 128 ASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEV 190 (287)
Q Consensus 128 ~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~~ 190 (287)
.||+|+.||.+|+.+||..|..++||+..++..||.++||+++||++||||||+|+|++..+.
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~~ 63 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRES 63 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCTT
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchhc
Confidence 367899999999999999999999999999999999999999999999999999999976553
No 33
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.75 E-value=8.1e-19 Score=137.90 Aligned_cols=64 Identities=22% Similarity=0.274 Sum_probs=57.5
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhh
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 189 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~ 189 (287)
...+|+|++||..|+.+||..|..++||+..++.+||.+|||+++||++||||||+|+|+.+.+
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 4567889999999999999999999999999999999999999999999999999999997644
No 34
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.75 E-value=8.4e-19 Score=135.55 Aligned_cols=61 Identities=31% Similarity=0.603 Sum_probs=55.5
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhh
Q 023113 127 DASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 187 (287)
Q Consensus 127 ~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq 187 (287)
+.+|+|+.||..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|+++
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 5788899999999999999999999999999999999999999999999999999999864
No 35
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=1.5e-18 Score=129.22 Aligned_cols=59 Identities=22% Similarity=0.382 Sum_probs=56.2
Q ss_pred CCCCccCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhh
Q 023113 129 SRKKLRLSKEQSLLLEETFKE-HSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 187 (287)
Q Consensus 129 rrkRt~~T~~Ql~~Le~~F~~-~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq 187 (287)
.++|++||..|+.+||..|.. ++||+..++.+||.+|||+++||++||||||+|+|+++
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 567899999999999999996 99999999999999999999999999999999999965
No 36
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.75 E-value=1.4e-18 Score=128.17 Aligned_cols=61 Identities=31% Similarity=0.560 Sum_probs=58.0
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhh
Q 023113 128 ASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 188 (287)
Q Consensus 128 ~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~ 188 (287)
.++.|+.||..|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 4678999999999999999999999999999999999999999999999999999998654
No 37
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=129.48 Aligned_cols=63 Identities=29% Similarity=0.447 Sum_probs=59.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhh
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 188 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~ 188 (287)
++.++.|+.||..|+.+||..|..++||+..++.+||..|||++.+|+|||||||+|+|+++.
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 366788999999999999999999999999999999999999999999999999999998653
No 38
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=2.4e-18 Score=128.55 Aligned_cols=60 Identities=20% Similarity=0.344 Sum_probs=56.6
Q ss_pred CCCCCccCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhh
Q 023113 128 ASRKKLRLSKEQSLLLEETFKE-HSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 187 (287)
Q Consensus 128 ~rrkRt~~T~~Ql~~Le~~F~~-~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq 187 (287)
.+++|+.||.+|+.+||..|.. ++||+..++.+||.++||+++||++||||||+|+|+++
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 3567899999999999999995 99999999999999999999999999999999999965
No 39
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=122.60 Aligned_cols=57 Identities=35% Similarity=0.575 Sum_probs=54.6
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHH
Q 023113 128 ASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 184 (287)
Q Consensus 128 ~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 184 (287)
.++.|+.|+..|+.+||..|..++||+..++.+||.+|||++.||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999986
No 40
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.5e-18 Score=129.26 Aligned_cols=61 Identities=21% Similarity=0.354 Sum_probs=56.8
Q ss_pred CCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhh
Q 023113 129 SRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 189 (287)
Q Consensus 129 rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~ 189 (287)
.++|++||.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+++..
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 4567789999999999999999999999999999999999999999999999999997543
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.73 E-value=1.9e-18 Score=124.27 Aligned_cols=57 Identities=26% Similarity=0.421 Sum_probs=50.7
Q ss_pred CCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhh
Q 023113 131 KKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 187 (287)
Q Consensus 131 kRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq 187 (287)
.|++||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 478999999999999999999999999999999999999999999999999999864
No 42
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.73 E-value=1.8e-18 Score=124.53 Aligned_cols=58 Identities=38% Similarity=0.650 Sum_probs=48.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHH
Q 023113 127 DASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 184 (287)
Q Consensus 127 ~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 184 (287)
+.++.|+.|+..|+.+||..|..++||+..++..||.++||++.||++||||||+|+|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 5678899999999999999999999999999999999999999999999999999976
No 43
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.73 E-value=2.7e-18 Score=122.00 Aligned_cols=54 Identities=37% Similarity=0.565 Sum_probs=51.0
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhh
Q 023113 133 LRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 186 (287)
Q Consensus 133 t~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krk 186 (287)
|.||.+|+.+||..|..++||+..+|.+||.++||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999985
No 44
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=3e-18 Score=129.80 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=55.3
Q ss_pred CCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhh
Q 023113 130 RKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 188 (287)
Q Consensus 130 rkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~ 188 (287)
.+|++||.+|+.+|+..|..++||+..+|++||..+||+++||+|||||||+|+|+.+.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 45667999999999999999999999999999999999999999999999999998653
No 45
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=5.9e-18 Score=126.24 Aligned_cols=63 Identities=25% Similarity=0.294 Sum_probs=58.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhh
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKE---HSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 188 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~---~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~ 188 (287)
++.+++|+.|+..|+.+||.+|.. ++||+..++++||.++||+++||++||||||+|+|+...
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 367888999999999999999987 999999999999999999999999999999999998654
No 46
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=4.8e-18 Score=126.93 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=58.9
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhh
Q 023113 127 DASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 189 (287)
Q Consensus 127 ~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~ 189 (287)
+.++.|+.||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+.+..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 356789999999999999999999999999999999999999999999999999999986643
No 47
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-18 Score=128.40 Aligned_cols=61 Identities=28% Similarity=0.304 Sum_probs=57.1
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhh
Q 023113 128 ASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 188 (287)
Q Consensus 128 ~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~ 188 (287)
..+.|++||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+++.
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 4556899999999999999999999999999999999999999999999999999998654
No 48
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.71 E-value=8.7e-18 Score=125.32 Aligned_cols=63 Identities=29% Similarity=0.412 Sum_probs=58.9
Q ss_pred CCCCccCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhhhh
Q 023113 129 SRKKLRLSKEQSLLLEETF---KEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVD 191 (287)
Q Consensus 129 rrkRt~~T~~Ql~~Le~~F---~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~~~ 191 (287)
+|+|++|+..|+.+|+.+| ..++||+..++..||.++||++.||++||||||+|+|++.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~~ 67 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccccc
Confidence 6789999999999999999 89999999999999999999999999999999999998765543
No 49
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=8.2e-18 Score=131.80 Aligned_cols=63 Identities=22% Similarity=0.363 Sum_probs=59.5
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------CCccchhhhhhhhhhHHHhhhh
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLN---------------LRPRQVEVWFQNRRARTKLKQT 188 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~Lg---------------L~~rqVqvWFQNRRak~Krkq~ 188 (287)
++.+|.|+.|+..|+.+||..|+.++||+..+|++||.+|| |++.+|++||||||+|+|+++.
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 36788899999999999999999999999999999999999 9999999999999999998654
No 50
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=7.7e-18 Score=131.18 Aligned_cols=58 Identities=24% Similarity=0.408 Sum_probs=54.2
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhh
Q 023113 132 KLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 189 (287)
Q Consensus 132 Rt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~ 189 (287)
..+||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|||+++..
T Consensus 15 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~ 72 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEK 72 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSC
T ss_pred hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHH
Confidence 3489999999999999999999999999999999999999999999999999986543
No 51
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.70 E-value=2.2e-17 Score=126.97 Aligned_cols=61 Identities=30% Similarity=0.420 Sum_probs=57.1
Q ss_pred CCCCccCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhh
Q 023113 129 SRKKLRLSKEQSLLLEETF---KEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 189 (287)
Q Consensus 129 rrkRt~~T~~Ql~~Le~~F---~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~ 189 (287)
||+|+.|+..|+.+|+.+| ..++||+..++..||.++||++.||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6789999999999999999 899999999999999999999999999999999999996644
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=7.8e-18 Score=122.43 Aligned_cols=59 Identities=27% Similarity=0.379 Sum_probs=56.1
Q ss_pred CCCCCCccCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 127 DASRKKLRLSKEQSLLLEETF---KEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 127 ~~rrkRt~~T~~Ql~~Le~~F---~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
..+++|+.|+..|+.+|+.+| ..++||+..++.+||.++||++.||++||||||+|+|+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 357889999999999999999 89999999999999999999999999999999999986
No 53
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.69 E-value=1.9e-17 Score=118.92 Aligned_cols=56 Identities=30% Similarity=0.428 Sum_probs=53.6
Q ss_pred CCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhh
Q 023113 131 KKLRLSKEQSLLLEETFKE---HSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 186 (287)
Q Consensus 131 kRt~~T~~Ql~~Le~~F~~---~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krk 186 (287)
+|++|+.+|+.+||..|.. ++||+..++..||.++||++.||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4789999999999999999 9999999999999999999999999999999999873
No 54
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=6.6e-18 Score=126.38 Aligned_cols=59 Identities=25% Similarity=0.371 Sum_probs=55.4
Q ss_pred CCCCCccCCHHHHHHHHHHH-hhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhh
Q 023113 128 ASRKKLRLSKEQSLLLEETF-KEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 186 (287)
Q Consensus 128 ~rrkRt~~T~~Ql~~Le~~F-~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krk 186 (287)
+.++|++++.+|+.+||..| ..++||+..+|.+||.+|||+++||+|||||||+|+|+.
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 45677789999999999999 999999999999999999999999999999999999974
No 55
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.69 E-value=9.6e-18 Score=143.98 Aligned_cols=64 Identities=27% Similarity=0.381 Sum_probs=52.5
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhh
Q 023113 125 AGDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 188 (287)
Q Consensus 125 ~~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~ 188 (287)
.++.||+|++||..|+.+||..|..++||+..+|.+||.++||+++||+|||||||+|+|+++.
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 3467888999999999999999999999999999999999999999999999999999999654
No 56
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.69 E-value=3.3e-17 Score=125.58 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=57.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhh
Q 023113 127 DASRKKLRLSKEQSLLLEETFKE---HSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 188 (287)
Q Consensus 127 ~~rrkRt~~T~~Ql~~Le~~F~~---~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~ 188 (287)
+.+++|+.|+.+|+.+|+.+|.. ++||+..+|++||.++||+++||++||||||+|+|+...
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 56788999999999999999987 599999999999999999999999999999999988543
No 57
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.68 E-value=2.1e-17 Score=139.32 Aligned_cols=61 Identities=33% Similarity=0.502 Sum_probs=55.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhh
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 186 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krk 186 (287)
++.||+|+.||..|+.+||..|..++||+..+|.+||.++||+++||+|||||||+|+|++
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 4677889999999999999999999999999999999999999999999999999999985
No 58
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.67 E-value=2.5e-17 Score=140.62 Aligned_cols=61 Identities=26% Similarity=0.477 Sum_probs=54.9
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhh
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 186 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krk 186 (287)
.+.||+|+.||..|+.+||..|..++||+..+|..||.++||+++||+|||||||+|+|++
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4678889999999999999999999999999999999999999999999999999999985
No 59
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-17 Score=123.37 Aligned_cols=58 Identities=40% Similarity=0.582 Sum_probs=54.1
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhhh
Q 023113 133 LRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEV 190 (287)
Q Consensus 133 t~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~~ 190 (287)
..+|..|+..||..|..++||+..+|.+||.++||+++||+|||||||+|+|+++...
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~ 66 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSS 66 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhh
Confidence 3579999999999999999999999999999999999999999999999999976543
No 60
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=7.9e-17 Score=128.26 Aligned_cols=62 Identities=19% Similarity=0.429 Sum_probs=58.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh---------------------CCCccchhhhhhhhhhHHH
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQL---------------------NLRPRQVEVWFQNRRARTK 184 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~L---------------------gL~~rqVqvWFQNRRak~K 184 (287)
++.||.|+.|+..|+.+||+.|+.++||+..+|++||.+| +|++.+|++||||||+++|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 3678889999999999999999999999999999999999 7999999999999999999
Q ss_pred hhh
Q 023113 185 LKQ 187 (287)
Q Consensus 185 rkq 187 (287)
+++
T Consensus 84 r~~ 86 (102)
T 2da6_A 84 FRQ 86 (102)
T ss_dssp HHH
T ss_pred Hhh
Confidence 865
No 61
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=8.8e-17 Score=124.79 Aligned_cols=58 Identities=22% Similarity=0.321 Sum_probs=53.9
Q ss_pred CCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhh
Q 023113 131 KKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 188 (287)
Q Consensus 131 kRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~ 188 (287)
++.+||.+|+.+||..|..++||+..+|++||.++||+++||+|||||||+|+|+++.
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 4455999999999999999999999999999999999999999999999999988653
No 62
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.67 E-value=3.3e-17 Score=125.43 Aligned_cols=61 Identities=28% Similarity=0.374 Sum_probs=55.3
Q ss_pred CCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhh
Q 023113 129 SRKKLRLSKEQSLLLEETFKE---HSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 189 (287)
Q Consensus 129 rrkRt~~T~~Ql~~Le~~F~~---~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~ 189 (287)
+++|++|+.+|+.+||.+|.. ++||+..++..||.++||++.||++||||||+|+|+....
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 455677999999999999999 9999999999999999999999999999999999986543
No 63
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=6.2e-17 Score=119.64 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=55.8
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHH
Q 023113 125 AGDASRKKLRLSKEQSLLLEETFKE-HSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 184 (287)
Q Consensus 125 ~~~~rrkRt~~T~~Ql~~Le~~F~~-~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 184 (287)
.++.+|.||.|+.+|+.+|+.+|+. +.||+...|+.||.++||++++|+|||||||--.|
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 3467889999999999999999999 99999999999999999999999999999997544
No 64
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.67 E-value=6.8e-17 Score=124.53 Aligned_cols=59 Identities=29% Similarity=0.408 Sum_probs=55.8
Q ss_pred CCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 127 DASRKKLRLSKEQSLLLEETFKE---HSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 127 ~~rrkRt~~T~~Ql~~Le~~F~~---~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
..+++|++|+.+|+.+||.+|.. ++||+..++..||.++||+++||++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 46677899999999999999999 999999999999999999999999999999999873
No 65
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.65 E-value=1e-16 Score=117.97 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhh
Q 023113 135 LSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 187 (287)
Q Consensus 135 ~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq 187 (287)
-|.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999854
No 66
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=135.06 Aligned_cols=60 Identities=23% Similarity=0.393 Sum_probs=57.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
++.||+|+.|+..|+.+||..|..++||+..+|.+||.++||+++||+|||||||+|+|+
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 367788999999999999999999999999999999999999999999999999999986
No 67
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-16 Score=117.12 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=50.8
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhh
Q 023113 132 KLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 186 (287)
Q Consensus 132 Rt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krk 186 (287)
+..++.+|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|.++.
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 3456789999999999999999999999999999999999999999999988763
No 68
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.64 E-value=7.3e-17 Score=127.92 Aligned_cols=64 Identities=16% Similarity=0.381 Sum_probs=54.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH------------------hC---CCccchhhhhhhhhhHHH
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQ------------------LN---LRPRQVEVWFQNRRARTK 184 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~------------------Lg---L~~rqVqvWFQNRRak~K 184 (287)
.+.||.|+.|+..|+.+||..|..++||+..+|++||.. || |++.+|+|||||||+++|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 367888999999999999999999999999999999999 88 999999999999999998
Q ss_pred hhhhh
Q 023113 185 LKQTE 189 (287)
Q Consensus 185 rkq~~ 189 (287)
+++..
T Consensus 87 ~k~~~ 91 (99)
T 1lfb_A 87 FRHKL 91 (99)
T ss_dssp CCC--
T ss_pred Hhchh
Confidence 87643
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=8.2e-17 Score=118.11 Aligned_cols=49 Identities=29% Similarity=0.493 Sum_probs=46.1
Q ss_pred HHHHHHHHHHH-hhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 137 KEQSLLLEETF-KEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 137 ~~Ql~~Le~~F-~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
..|+.+||+.| ..++||+..+|.+||++|||+++||+|||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 45899999999 57999999999999999999999999999999999986
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.63 E-value=8.4e-17 Score=136.75 Aligned_cols=59 Identities=31% Similarity=0.436 Sum_probs=57.1
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 127 DASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 127 ~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
+.+|+|+.|+..|+..||..|..++||+..+|.+||.++||+++||+|||||||+|+|+
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccC
Confidence 57788999999999999999999999999999999999999999999999999999997
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.60 E-value=4.1e-16 Score=133.16 Aligned_cols=62 Identities=24% Similarity=0.341 Sum_probs=54.9
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhh
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 187 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq 187 (287)
.+.||+|+.||..|+.+||..|..++||+..+|..||.+|||+++||+|||||||+|+|+..
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 36788999999999999999999999999999999999999999999999999999999854
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=8e-16 Score=113.37 Aligned_cols=59 Identities=24% Similarity=0.255 Sum_probs=50.9
Q ss_pred cCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhhhhh
Q 023113 134 RLSKEQSLLLEETFK---EHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDC 192 (287)
Q Consensus 134 ~~T~~Ql~~Le~~F~---~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~~~~ 192 (287)
+|+.+|+.+|+.+|. .++||+..++.+||.++||+++||++||||||+|+|+...+..+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 699999999999999 99999999999999999999999999999999999987655443
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.44 E-value=2.1e-14 Score=126.37 Aligned_cols=60 Identities=17% Similarity=0.388 Sum_probs=53.8
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------------CCccchhhhhhhhhhHHH
Q 023113 126 GDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLN---------------------LRPRQVEVWFQNRRARTK 184 (287)
Q Consensus 126 ~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~Lg---------------------L~~rqVqvWFQNRRak~K 184 (287)
++.||.|+.|+..|+.+||+.|..++||+...|++||..+| |++.+|++||||||+++|
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 46788899999999999999999999999999999999999 999999999999999987
Q ss_pred h
Q 023113 185 L 185 (287)
Q Consensus 185 r 185 (287)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 5
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.39 E-value=3.4e-13 Score=104.85 Aligned_cols=55 Identities=29% Similarity=0.332 Sum_probs=51.4
Q ss_pred ccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhh
Q 023113 133 LRLSKEQSLLLEETFKE---HSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 187 (287)
Q Consensus 133 t~~T~~Ql~~Le~~F~~---~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq 187 (287)
.-|+.+++.+|+.+|.. ++||+..+|.+||.++||+++||++||||||.|+|+..
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 45899999999999987 99999999999999999999999999999999998853
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.9e-13 Score=99.81 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhH
Q 023113 137 KEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 182 (287)
Q Consensus 137 ~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak 182 (287)
++|+.+|+.+|..+++|+..++..||..+||+.++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.32 E-value=7.8e-13 Score=118.21 Aligned_cols=59 Identities=19% Similarity=0.391 Sum_probs=53.3
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------------CCccchhhhhhhhhhHH
Q 023113 125 AGDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLN---------------------LRPRQVEVWFQNRRART 183 (287)
Q Consensus 125 ~~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~Lg---------------------L~~rqVqvWFQNRRak~ 183 (287)
.++.||.|+.|+..|+.+|+..|..++||+..+|++||..+| |++.||++||||||++.
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 346788899999999999999999999999999999999988 89999999999999864
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.26 E-value=1.6e-12 Score=122.48 Aligned_cols=56 Identities=36% Similarity=0.625 Sum_probs=52.8
Q ss_pred CCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHH
Q 023113 129 SRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 184 (287)
Q Consensus 129 rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 184 (287)
++.++.|+..|+..||+.|+.++||+..+|++||+++||+++||++||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 45577899999999999999999999999999999999999999999999999876
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.85 E-value=1.7e-10 Score=75.48 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=20.8
Q ss_pred cchhhhhhhhhhHHHhhhhhhhhHH
Q 023113 170 RQVEVWFQNRRARTKLKQTEVDCEY 194 (287)
Q Consensus 170 rqVqvWFQNRRak~Krkq~~~~~~~ 194 (287)
+||+|||||||+|||+++.+.+.+.
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~ 25 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDI 25 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHH
Confidence 6999999999999999887655443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.16 E-value=0.013 Score=43.05 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhh
Q 023113 139 QSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQN 178 (287)
Q Consensus 139 Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQN 178 (287)
-.+.|+++|..++.+.......|+.+.+|+..||+-||-.
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 3578999999999999999999999999999999999954
No 80
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=94.95 E-value=0.0003 Score=52.75 Aligned_cols=46 Identities=9% Similarity=-0.083 Sum_probs=41.5
Q ss_pred cchhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 56 NSDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 56 ~~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
..|+.+|..+|..|+||+..+++++ ..++.++..|.+||+|++.+.
T Consensus 12 ~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~ 58 (76)
T 2ecc_A 12 KEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYAL 58 (76)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHH
Confidence 3499999999999999999999998 889999999999999987543
No 81
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.41 E-value=0.00046 Score=49.74 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=42.0
Q ss_pred cchhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 56 NSDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 56 ~~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
+.|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.++.
T Consensus 12 ~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~ 59 (64)
T 2e19_A 12 KNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQI 59 (64)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCC
Confidence 4599999999999999999999888 7789999999999999987654
No 82
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.01 E-value=0.00088 Score=48.60 Aligned_cols=45 Identities=9% Similarity=0.066 Sum_probs=41.1
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.+..
T Consensus 18 Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 63 (70)
T 2djn_A 18 QLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIK 63 (70)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhc
Confidence 99999999999999999999988 7789999999999999886654
No 83
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=93.84 E-value=0.00052 Score=50.18 Aligned_cols=46 Identities=9% Similarity=-0.013 Sum_probs=41.0
Q ss_pred CCcchhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCC
Q 023113 54 DRNSDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSE 99 (287)
Q Consensus 54 ~~~~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~ 99 (287)
.+..|+..|...|..|+||+..+++++ ...+.++..|..||+|++.
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~ 57 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRY 57 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchh
Confidence 345699999999999999999999998 7789999999999998863
No 84
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=93.60 E-value=0.00071 Score=52.09 Aligned_cols=45 Identities=4% Similarity=-0.018 Sum_probs=40.9
Q ss_pred cchhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 56 NSDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 56 ~~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
..|+.+|...|..|+||+..+++++ ..++..+..|.+||+|++.+
T Consensus 20 ~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k 65 (89)
T 2ecb_A 20 AEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKS 65 (89)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchH
Confidence 4499999999999999999999998 78899999999999998743
No 85
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=93.56 E-value=0.00079 Score=48.86 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=41.2
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.+..
T Consensus 18 Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~k 63 (70)
T 2cra_A 18 QLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEK 63 (70)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhc
Confidence 99999999999999999999988 7789999999999999886654
No 86
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=93.46 E-value=0.0019 Score=45.82 Aligned_cols=44 Identities=23% Similarity=0.090 Sum_probs=39.8
Q ss_pred hhhhhhhcc---CCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 58 DTRSFLRGI---DVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 58 q~~~l~~~f---d~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
|..+|..+| ..|+||+..+++++ ..++.++..|..||.|++.+.
T Consensus 14 q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~ 61 (64)
T 1du6_A 14 ATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRY 61 (64)
T ss_dssp HHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 999999999 99999999999888 778899999999999988654
No 87
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=93.39 E-value=0.0022 Score=46.23 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=39.8
Q ss_pred chhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 57 SDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 57 ~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
.|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.+
T Consensus 13 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 57 (68)
T 1yz8_P 13 QQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAK 57 (68)
T ss_dssp HHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHH
Confidence 399999999999999999999988 77899999999999998744
No 88
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.34 E-value=0.00052 Score=52.47 Aligned_cols=48 Identities=10% Similarity=0.072 Sum_probs=42.0
Q ss_pred CcchhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 55 RNSDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 55 ~~~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
+..|+.+|...|..|+||+..+++++ ..++.++..|.+||.|++.+..
T Consensus 21 t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r 69 (89)
T 2dmp_A 21 TQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRD 69 (89)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHH
Confidence 34599999999999999999999988 7789999999999999885543
No 89
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.23 E-value=0.00062 Score=50.70 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=40.9
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.+..
T Consensus 18 Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~r 63 (80)
T 2dms_A 18 QLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 63 (80)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhh
Confidence 99999999999999999999988 7789999999999999986543
No 90
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=93.22 E-value=0.0012 Score=48.73 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=39.1
Q ss_pred chhhhhhhccCC-CCCCCccccccc-cCCCCCCCCcccCCCCCC
Q 023113 57 SDTRSFLRGIDV-NQAPTVADCEEE-NGVSSPNSTVSSISGKRS 98 (287)
Q Consensus 57 ~q~~~l~~~fd~-n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s 98 (287)
.|+.+|...|.. |+||+..+++.+ +..+.|...|..||+|++
T Consensus 17 eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR 60 (71)
T 1wi3_A 17 EALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQR 60 (71)
T ss_dssp HHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccce
Confidence 399999999998 999999999999 889999999999999876
No 91
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=93.04 E-value=0.0018 Score=48.59 Aligned_cols=45 Identities=9% Similarity=0.027 Sum_probs=41.0
Q ss_pred hhhhhhhccCC----CCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 58 DTRSFLRGIDV----NQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 58 q~~~l~~~fd~----n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
|+.+|...|.. |+||+..+++++ ..++.++..|.+||.|++.+..
T Consensus 28 Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~ 77 (80)
T 1wh5_A 28 QKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGP 77 (80)
T ss_dssp HHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCC
Confidence 99999999999 999999999998 7889999999999999886543
No 92
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=92.89 E-value=0.0014 Score=48.08 Aligned_cols=50 Identities=6% Similarity=0.017 Sum_probs=43.8
Q ss_pred CCCcchhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 53 SDRNSDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 53 ~~~~~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
-++..|...|...|..|+||+..+++++ ..++.++..|..||.|++.+..
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~k 60 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTK 60 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhh
Confidence 3556699999999999999999999988 7789999999999999986554
No 93
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=92.82 E-value=0.00058 Score=48.05 Aligned_cols=44 Identities=11% Similarity=-0.055 Sum_probs=38.9
Q ss_pred chhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 57 SDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 57 ~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
.|..+|...|..|+||+..+++++ ..++.++..|..||.|++.+
T Consensus 15 ~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 15 QARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 399999999999999999999888 77889999999999887643
No 94
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=92.80 E-value=0.00067 Score=48.62 Aligned_cols=46 Identities=7% Similarity=0.011 Sum_probs=40.5
Q ss_pred chhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 57 SDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 57 ~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
.|..+|...|..|+||+..+++++ ..++.++..|..||.|++.+..
T Consensus 13 ~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 59 (66)
T 1bw5_A 13 KQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDK 59 (66)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHh
Confidence 399999999999999999999888 7788999999999999875543
No 95
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=92.70 E-value=0.0023 Score=47.66 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=41.0
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.+..
T Consensus 18 Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~k 63 (80)
T 2cue_A 18 QIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWR 63 (80)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHH
Confidence 99999999999999999999988 7789999999999999886554
No 96
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=92.55 E-value=0.0013 Score=47.50 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=39.7
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.+.
T Consensus 18 q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 62 (70)
T 2da1_A 18 QLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKE 62 (70)
T ss_dssp HHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHH
Confidence 99999999999999999999888 778899999999999987543
No 97
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=92.52 E-value=0.25 Score=37.72 Aligned_cols=42 Identities=26% Similarity=0.285 Sum_probs=25.9
Q ss_pred hhHHHhhhhh----hhhHHHHHHhhhhHHHHHHHHHHHHHHHhhhc
Q 023113 180 RARTKLKQTE----VDCEYLKRCCENLTEENRRLQKEVQELRSLKL 221 (287)
Q Consensus 180 Rak~Krkq~~----~~~~~Lk~~~e~l~~en~~l~~e~~~lr~l~~ 221 (287)
|.+.|+++.. .....|..++..|..+...|..|+..|+.+..
T Consensus 29 rSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554443 33445677777777777777777777775543
No 98
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=92.48 E-value=0.0043 Score=46.57 Aligned_cols=44 Identities=9% Similarity=0.042 Sum_probs=39.8
Q ss_pred hhhhhhhccCC-----CCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 58 DTRSFLRGIDV-----NQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 58 q~~~l~~~fd~-----n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
|+.+|. .|.. |+||+...++++ ..++.++..|.+||.|++.+..
T Consensus 28 Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~ 77 (80)
T 1wh7_A 28 QKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGP 77 (80)
T ss_dssp HHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSC
T ss_pred HHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCC
Confidence 999999 7999 999999999998 7899999999999999986643
No 99
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=92.47 E-value=0.0014 Score=45.54 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=38.8
Q ss_pred chhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCC
Q 023113 57 SDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSE 99 (287)
Q Consensus 57 ~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~ 99 (287)
.|..+|...|..|+||+..+++++ ..++.++..|..||.|++.
T Consensus 10 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 53 (58)
T 1ig7_A 10 AQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRA 53 (58)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhh
Confidence 499999999999999999999888 7789999999999988763
No 100
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.45 E-value=0.00098 Score=49.17 Aligned_cols=47 Identities=13% Similarity=0.015 Sum_probs=41.7
Q ss_pred chhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCCC
Q 023113 57 SDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREPI 103 (287)
Q Consensus 57 ~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~~ 103 (287)
.|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.+...
T Consensus 18 ~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk 65 (76)
T 2dn0_A 18 EQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRN 65 (76)
T ss_dssp HHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHH
Confidence 399999999999999999999988 77899999999999998865543
No 101
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=92.42 E-value=0.0016 Score=47.14 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=40.4
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.+..
T Consensus 18 q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 63 (70)
T 2da2_A 18 QLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKAR 63 (70)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHh
Confidence 99999999999999999999988 7789999999999999875443
No 102
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=92.42 E-value=0.001 Score=46.19 Aligned_cols=44 Identities=11% Similarity=0.068 Sum_probs=39.2
Q ss_pred chhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 57 SDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 57 ~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
.|..+|...|..|+||+..+++++ ..++.++..|..||.|++.+
T Consensus 7 ~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k 51 (56)
T 3a03_A 7 SQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTK 51 (56)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhh
Confidence 499999999999999999999888 77899999999999987643
No 103
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=92.41 E-value=0.00097 Score=47.16 Aligned_cols=45 Identities=4% Similarity=-0.020 Sum_probs=40.0
Q ss_pred chhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 57 SDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 57 ~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
.|..+|...|..|+||+..+++++ ..++.++..|..||.|++.+.
T Consensus 13 ~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 58 (62)
T 2vi6_A 13 AQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKC 58 (62)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcch
Confidence 399999999999999999999888 778899999999999887543
No 104
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=92.27 E-value=0.0012 Score=46.62 Aligned_cols=43 Identities=7% Similarity=0.028 Sum_probs=38.6
Q ss_pred chhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCC
Q 023113 57 SDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSE 99 (287)
Q Consensus 57 ~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~ 99 (287)
.|..+|...|..|+||+..+++++ ..++.++..|..||.|++.
T Consensus 13 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 56 (61)
T 2hdd_A 13 EQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRA 56 (61)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcc
Confidence 399999999999999999999888 7788999999999988764
No 105
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.19 E-value=0.0015 Score=48.15 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=41.7
Q ss_pred cchhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 56 NSDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 56 ~~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
..|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.+..
T Consensus 16 ~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~k 63 (75)
T 2da5_A 16 PEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVN 63 (75)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHH
Confidence 3499999999999999999999888 7788999999999999986554
No 106
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=92.18 E-value=0.0018 Score=48.51 Aligned_cols=45 Identities=7% Similarity=-0.011 Sum_probs=41.0
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.+..
T Consensus 33 Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~k 78 (84)
T 2kt0_A 33 QLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSK 78 (84)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 7789999999999999886654
No 107
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=92.15 E-value=0.0051 Score=46.53 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=39.4
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.+
T Consensus 39 Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k 82 (88)
T 2r5y_A 39 QTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMK 82 (88)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHH
Confidence 99999999999999999999988 77899999999999998744
No 108
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=92.08 E-value=0.054 Score=40.81 Aligned_cols=44 Identities=11% Similarity=0.158 Sum_probs=31.3
Q ss_pred CccCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHhCCCccchhhhhhhh
Q 023113 132 KLRLSKEQSLLLEETFKEH-STLNPKQKLALAKQLNLRPRQVEVWFQNR 179 (287)
Q Consensus 132 Rt~~T~~Ql~~Le~~F~~~-~~p~~~~r~~LA~~LgL~~rqVqvWFQNR 179 (287)
|..|+.++....-..+... .. ...++|+.+|++...|..|...-
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHHH
Confidence 3568888876665555432 22 25689999999999999998543
No 109
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=92.08 E-value=0.0012 Score=46.35 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=39.9
Q ss_pred chhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 57 SDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 57 ~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
.|..+|...|..|+||+..+++++ ..++.++..|..||.|++.+.
T Consensus 9 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 54 (60)
T 3a02_A 9 FQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKW 54 (60)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhh
Confidence 499999999999999999999888 778899999999999887543
No 110
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.07 E-value=0.003 Score=49.89 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=42.5
Q ss_pred CCCCCCccCCCCCCcchhhhhhhccCCCCCCCccccccc-cCC---------------------CCCCCCcccCCCCCCC
Q 023113 42 KRSPWTELFHSSDRNSDTRSFLRGIDVNQAPTVADCEEE-NGV---------------------SSPNSTVSSISGKRSE 99 (287)
Q Consensus 42 ~~~~w~~~~~~~~~~~q~~~l~~~fd~n~~P~~a~~e~~-~~~---------------------ssp~s~i~s~~~~~s~ 99 (287)
.|+.|... |+.+|...|+.|+||+...++++ ..+ ..++..|..||.|++.
T Consensus 9 ~Rt~ft~~--------ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~ 80 (102)
T 2da6_A 9 NRFKWGPA--------SQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 80 (102)
T ss_dssp CCCCCCHH--------HHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHH
T ss_pred CCccCCHH--------HHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHH
Confidence 45777665 99999999999999999988887 333 4667788899999986
Q ss_pred CCC
Q 023113 100 REP 102 (287)
Q Consensus 100 r~~ 102 (287)
+..
T Consensus 81 k~k 83 (102)
T 2da6_A 81 EEA 83 (102)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 111
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=91.93 E-value=0.002 Score=44.46 Aligned_cols=43 Identities=7% Similarity=0.030 Sum_probs=37.9
Q ss_pred chhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCC
Q 023113 57 SDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSE 99 (287)
Q Consensus 57 ~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~ 99 (287)
.|..+|...|..|+||+..+++++ ..++.++..|..||.|++.
T Consensus 12 ~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 55 (58)
T 3rkq_A 12 AQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRY 55 (58)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhc
Confidence 399999999999999999999888 6678888999999988763
No 112
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=91.92 E-value=0.0024 Score=47.74 Aligned_cols=43 Identities=14% Similarity=0.056 Sum_probs=39.3
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.+
T Consensus 31 Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k 74 (81)
T 1b8i_A 31 QTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMK 74 (81)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhh
Confidence 99999999999999999999888 77889999999999998744
No 113
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.89 E-value=0.0021 Score=47.62 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=40.3
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.+.
T Consensus 18 Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 62 (80)
T 2dmq_A 18 QLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKF 62 (80)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHH
Confidence 99999999999999999999988 788999999999999987544
No 114
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=91.86 E-value=0.0023 Score=45.93 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=39.9
Q ss_pred chhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 57 SDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 57 ~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
.|..+|...|..|+||+..+++++ ..++.++..|..||.|++.+.
T Consensus 11 ~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 56 (67)
T 2k40_A 11 NQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKL 56 (67)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHH
Confidence 399999999999999999999888 778899999999999987543
No 115
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.73 E-value=0.0016 Score=47.19 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=39.3
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.+
T Consensus 18 q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2dmu_A 18 QLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAK 61 (70)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccc
Confidence 99999999999999999999888 77889999999999998744
No 116
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=91.71 E-value=0.0015 Score=46.39 Aligned_cols=44 Identities=7% Similarity=-0.067 Sum_probs=39.3
Q ss_pred chhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 57 SDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 57 ~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
.|..+|...|..|+||+..+++++ ..++.++..|..||.|++.+
T Consensus 13 ~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 57 (63)
T 2h1k_A 13 AQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMK 57 (63)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhh
Confidence 399999999999999999999888 77889999999999987643
No 117
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=91.69 E-value=0.0021 Score=46.51 Aligned_cols=43 Identities=7% Similarity=0.067 Sum_probs=39.3
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
|..+|...|..|+||+..+++++ ..++.++..|..||.|++.+
T Consensus 18 q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2e1o_A 18 QTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAK 61 (70)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhh
Confidence 99999999999999999999888 77899999999999998744
No 118
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=91.63 E-value=0.0019 Score=46.58 Aligned_cols=45 Identities=13% Similarity=0.006 Sum_probs=40.1
Q ss_pred chhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 57 SDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 57 ~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
.|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.+.
T Consensus 12 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~ 57 (68)
T 1ahd_P 12 YQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKW 57 (68)
T ss_dssp HHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHH
Confidence 399999999999999999999888 778899999999999987543
No 119
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=91.63 E-value=0.002 Score=47.59 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=39.7
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.+.
T Consensus 28 Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 72 (80)
T 2da3_A 28 QLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARE 72 (80)
T ss_dssp THHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhH
Confidence 99999999999999999999888 778999999999999987543
No 120
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=91.61 E-value=0.0025 Score=45.97 Aligned_cols=45 Identities=11% Similarity=0.014 Sum_probs=40.0
Q ss_pred chhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 57 SDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 57 ~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
.|..+|...|..|+||+..+++++ ..++.++..|..||.|++.+.
T Consensus 12 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~ 57 (68)
T 1zq3_P 12 SQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRH 57 (68)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHH
Confidence 399999999999999999999888 778899999999999987543
No 121
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=91.60 E-value=0.0015 Score=45.85 Aligned_cols=43 Identities=12% Similarity=0.015 Sum_probs=38.6
Q ss_pred chhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCC
Q 023113 57 SDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSE 99 (287)
Q Consensus 57 ~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~ 99 (287)
.|..+|...|..|+||+..+++++ ..++.++..|..||.|++.
T Consensus 11 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 54 (60)
T 1jgg_A 11 DQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRM 54 (60)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHh
Confidence 399999999999999999999888 7788999999999988764
No 122
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=91.47 E-value=0.0073 Score=46.30 Aligned_cols=44 Identities=9% Similarity=0.096 Sum_probs=40.4
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
|..+|...|..|+||+..+++++ ..++.++..|.+||.|++.+.
T Consensus 28 Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~ 72 (93)
T 3a01_A 28 QVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKW 72 (93)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhh
Confidence 99999999999999999999998 788999999999999987543
No 123
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=91.34 E-value=0.0025 Score=46.65 Aligned_cols=45 Identities=13% Similarity=0.054 Sum_probs=40.5
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
|..+|...|..|+||+..+++++ ..++.++..|..||.|++.+..
T Consensus 18 Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~k 63 (73)
T 2l7z_A 18 QLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEK 63 (73)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHH
Confidence 99999999999999999999888 7789999999999999875543
No 124
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=91.26 E-value=0.0027 Score=46.88 Aligned_cols=44 Identities=9% Similarity=0.006 Sum_probs=40.2
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.+.
T Consensus 20 Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~ 64 (77)
T 1nk2_P 20 QTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKT 64 (77)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcch
Confidence 99999999999999999999988 788999999999999987543
No 125
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=90.81 E-value=0.0021 Score=44.98 Aligned_cols=44 Identities=11% Similarity=0.068 Sum_probs=38.7
Q ss_pred chhhhhhhccCC---CCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 57 SDTRSFLRGIDV---NQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 57 ~q~~~l~~~fd~---n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
.|..+|..+|.. |+||+..+++++ ..++.++..|..||.|++.+
T Consensus 8 ~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r 55 (60)
T 1k61_A 8 ENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 55 (60)
T ss_dssp HHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcc
Confidence 499999999999 999999999888 77889999999999887643
No 126
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.58 E-value=0.0026 Score=47.34 Aligned_cols=45 Identities=7% Similarity=0.019 Sum_probs=40.3
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.+..
T Consensus 28 Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~k 73 (80)
T 2dmt_A 28 QLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWK 73 (80)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhh
Confidence 99999999999999999999888 7788999999999999875443
No 127
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=90.53 E-value=0.0029 Score=46.21 Aligned_cols=45 Identities=9% Similarity=-0.008 Sum_probs=40.1
Q ss_pred chhhhhhhccC-CCCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 57 SDTRSFLRGID-VNQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 57 ~q~~~l~~~fd-~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
.|..+|...|. .|+||+..+++++ ..++.++..|..||.|++.+.
T Consensus 12 ~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~ 58 (73)
T 2hi3_A 12 DQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEW 58 (73)
T ss_dssp HHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 39999999999 6999999999988 778999999999999987544
No 128
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=90.43 E-value=0.0064 Score=47.53 Aligned_cols=45 Identities=11% Similarity=0.201 Sum_probs=37.8
Q ss_pred hhhhhhhccCCCCCCCccccccc-cC------------------CC---CCCCCcccCCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NG------------------VS---SPNSTVSSISGKRSEREP 102 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~------------------~s---sp~s~i~s~~~~~s~r~~ 102 (287)
|+.+|...|..|+||+...++++ .. ++ .++..|..||.|++.++.
T Consensus 20 Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 20 SQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 99999999999999999888887 33 55 777788899999886554
No 129
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=90.34 E-value=0.0042 Score=45.24 Aligned_cols=45 Identities=22% Similarity=0.090 Sum_probs=39.8
Q ss_pred chhhhhhhcc---CCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 57 SDTRSFLRGI---DVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 57 ~q~~~l~~~f---d~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
.|..+|..+| ..|+||+..+++.+ ..++.+...|..||.|++.+.
T Consensus 11 ~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~ 59 (73)
T 1puf_B 11 QATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRY 59 (73)
T ss_dssp HHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhc
Confidence 3999999999 99999999999888 778899999999999987543
No 130
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=90.32 E-value=0.0025 Score=45.94 Aligned_cols=45 Identities=7% Similarity=-0.006 Sum_probs=40.0
Q ss_pred chhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 57 SDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 57 ~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
.|..+|...|..|+||+..+++++ ..++.++..|..||.|++.+.
T Consensus 12 ~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~ 57 (68)
T 1ftt_A 12 AQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 57 (68)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhh
Confidence 399999999999999999999888 778999999999999987543
No 131
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=90.24 E-value=0.0023 Score=46.68 Aligned_cols=46 Identities=7% Similarity=-0.085 Sum_probs=40.9
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREPI 103 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~~ 103 (287)
|..+|...|..|+||+..+++++ ..++.++..|..||.|++.+...
T Consensus 17 Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 63 (74)
T 2ly9_A 17 QLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRN 63 (74)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHh
Confidence 99999999999999999999888 77788999999999998865543
No 132
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=89.91 E-value=0.0031 Score=46.57 Aligned_cols=43 Identities=14% Similarity=-0.044 Sum_probs=39.2
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
|..+|...|..|+||+..+++++ ..++.++..|..||.|++.+
T Consensus 24 Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k 67 (77)
T 1puf_A 24 QTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMK 67 (77)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999988 77889999999999988744
No 133
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=89.87 E-value=0.0052 Score=46.19 Aligned_cols=46 Identities=22% Similarity=0.083 Sum_probs=40.7
Q ss_pred chhhhhhhcc---CCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 57 SDTRSFLRGI---DVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 57 ~q~~~l~~~f---d~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
.|..+|..+| ..|+||+..+++++ ..++.+...|..||.|++.+..
T Consensus 11 ~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~k 60 (87)
T 1b72_B 11 QATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 60 (87)
T ss_dssp HHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhh
Confidence 3999999999 99999999999888 7788999999999999886543
No 134
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=89.75 E-value=0.0054 Score=45.00 Aligned_cols=46 Identities=7% Similarity=0.074 Sum_probs=40.6
Q ss_pred chhhhhhhcc-CCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 57 SDTRSFLRGI-DVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 57 ~q~~~l~~~f-d~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
.|..+|...| ..|.||+..+++++ ..++.++..|..||.|++.+..
T Consensus 18 ~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r 65 (72)
T 2cqx_A 18 EPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 65 (72)
T ss_dssp CSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCC
Confidence 3899999999 99999999999888 7789999999999999875543
No 135
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=89.53 E-value=0.0035 Score=46.64 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=39.0
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
|..+|...|..|+||+..+++++ ..++.++..|..||.|++.+
T Consensus 29 Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 72 (81)
T 1fjl_A 29 QLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRAR 72 (81)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhh
Confidence 99999999999999999999888 77889999999999988743
No 136
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=89.41 E-value=0.77 Score=34.28 Aligned_cols=41 Identities=29% Similarity=0.422 Sum_probs=23.4
Q ss_pred hhhHHHhhhhhhh----hHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 023113 179 RRARTKLKQTEVD----CEYLKRCCENLTEENRRLQKEVQELRSL 219 (287)
Q Consensus 179 RRak~Krkq~~~~----~~~Lk~~~e~l~~en~~l~~e~~~lr~l 219 (287)
+|.+.|+++...+ ...|..+|..|..+...|..|+..|+.+
T Consensus 28 krSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 28 RKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555554433 3346666666666666666666666644
No 137
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=89.41 E-value=0.006 Score=47.00 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=39.4
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
|+.+|...|..|+||+..+++++ ..++.++..|..||.|++.+
T Consensus 45 Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k 88 (97)
T 1b72_A 45 QLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMK 88 (97)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHH
Confidence 99999999999999999999988 77899999999999998754
No 138
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=89.09 E-value=0.0046 Score=44.98 Aligned_cols=45 Identities=7% Similarity=-0.045 Sum_probs=39.8
Q ss_pred chhhhhhhccCC-CCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 57 SDTRSFLRGIDV-NQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 57 ~q~~~l~~~fd~-n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
.|..+|...|.. |+||+..+++++ ..++.++..|..||.|++.+.
T Consensus 11 ~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~ 57 (72)
T 1uhs_A 11 DQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEW 57 (72)
T ss_dssp HHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHH
Confidence 399999999994 999999999988 778999999999999987544
No 139
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=89.01 E-value=0.0038 Score=47.94 Aligned_cols=44 Identities=20% Similarity=0.083 Sum_probs=37.4
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCC---------------CCCCCcccCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVS---------------SPNSTVSSISGKRSERE 101 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~s---------------sp~s~i~s~~~~~s~r~ 101 (287)
|+.+|...|..|+||+...++++ ..++ .++..|..||.|++.+.
T Consensus 18 ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~ 77 (95)
T 2cuf_A 18 CLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEI 77 (95)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988887 4455 77778899999987544
No 140
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=88.83 E-value=0.0049 Score=44.49 Aligned_cols=44 Identities=9% Similarity=-0.054 Sum_probs=38.8
Q ss_pred chhhhhhhccC---CCCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 57 SDTRSFLRGID---VNQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 57 ~q~~~l~~~fd---~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
.|..+|..+|. .|+||+..+++++ ..++.+...|..||.|++.+
T Consensus 8 ~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r 55 (67)
T 3k2a_A 8 VATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 55 (67)
T ss_dssp HHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHH
Confidence 38899999999 9999999999888 66788899999999998754
No 141
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=88.61 E-value=0.0042 Score=45.19 Aligned_cols=44 Identities=11% Similarity=0.041 Sum_probs=39.4
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
|..+|...|..|+||+..+++++ ..++.++..|.+||.|++.+.
T Consensus 20 q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 64 (75)
T 2m0c_A 20 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKW 64 (75)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHH
Confidence 99999999999999999999888 677889999999999987543
No 142
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.36 E-value=0.003 Score=46.92 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=40.3
Q ss_pred chhhhhhhccCCC----CCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 57 SDTRSFLRGIDVN----QAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 57 ~q~~~l~~~fd~n----~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
.|+.+|...|..| +||+..+++++ ..++.++..|.+||.|++.+.
T Consensus 18 ~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~ 67 (80)
T 2da4_A 18 RDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKY 67 (80)
T ss_dssp HHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHH
Confidence 3999999999999 99999999888 778899999999999988544
No 143
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=88.24 E-value=0.0053 Score=46.04 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=41.2
Q ss_pred chhhhhhhccCC---CCCCCccccccc-cCCCCCCCCcccCCCCCCCCCCC
Q 023113 57 SDTRSFLRGIDV---NQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREPI 103 (287)
Q Consensus 57 ~q~~~l~~~fd~---n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~~ 103 (287)
.|..+|..+|.. |+||+..+++++ ..++.+...|..||.|++.+...
T Consensus 12 ~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk 62 (83)
T 1le8_B 12 ENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKT 62 (83)
T ss_dssp HHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccc
Confidence 499999999999 999999999888 77889999999999998865543
No 144
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=87.62 E-value=0.0091 Score=50.13 Aligned_cols=46 Identities=17% Similarity=0.025 Sum_probs=41.8
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREPI 103 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~~ 103 (287)
|+.+|...|..|+||+...++++ ..++.++..|..||.|++.+...
T Consensus 108 q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~ 154 (164)
T 2d5v_A 108 QRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLD 154 (164)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccc
Confidence 99999999999999999999888 77889999999999999877654
No 145
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.21 E-value=0.006 Score=45.05 Aligned_cols=45 Identities=13% Similarity=0.068 Sum_probs=40.1
Q ss_pred cchhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 56 NSDTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 56 ~~q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
.+|+.+|...|+.|+.|+..+++.+ ..++.+...|..||.|++.+
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 3499999999999999999888888 77899999999999998743
No 146
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=86.94 E-value=0.0064 Score=44.22 Aligned_cols=43 Identities=12% Similarity=-0.044 Sum_probs=37.8
Q ss_pred hhhhhhhccCC---CCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 58 DTRSFLRGIDV---NQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 58 q~~~l~~~fd~---n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
|..+|..+|.. |+||+..+++++ ..++.+...|..||.|++.+
T Consensus 18 q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r 64 (73)
T 1x2n_A 18 ATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 64 (73)
T ss_dssp HHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhh
Confidence 99999999965 999999999888 77889999999999988744
No 147
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=86.80 E-value=0.0074 Score=45.52 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=38.5
Q ss_pred hhhhhhhccCC---CCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 58 DTRSFLRGIDV---NQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 58 q~~~l~~~fd~---n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
|..+|..+|.. |+||+..+++++ ..++.+...|..||.|++.+
T Consensus 38 q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r 84 (87)
T 1mnm_C 38 NVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 84 (87)
T ss_dssp HHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 99999999999 999999999888 77888999999999987643
No 148
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=86.70 E-value=0.01 Score=42.94 Aligned_cols=51 Identities=12% Similarity=0.099 Sum_probs=42.7
Q ss_pred CCCCcchhhhhhhcc-CCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 52 SSDRNSDTRSFLRGI-DVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 52 ~~~~~~q~~~l~~~f-d~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
++..-.|..+|...| ..|.||+..+++++ ..++..+..|..||.|++.+..
T Consensus 5 ~~~~~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k 57 (64)
T 1x2m_A 5 SSGTAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEK 57 (64)
T ss_dssp SCCSSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSC
T ss_pred CCCCchHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccC
Confidence 344445899999999 78999999999888 7789999999999999986554
No 149
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=84.61 E-value=1.9 Score=30.61 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=24.7
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 023113 190 VDCEYLKRCCENLTEENRRLQKEVQELRSL 219 (287)
Q Consensus 190 ~~~~~Lk~~~e~l~~en~~l~~e~~~lr~l 219 (287)
.....|....+.|..+|..|..++..|+..
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788889999999999999999864
No 150
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=84.28 E-value=0.011 Score=44.31 Aligned_cols=44 Identities=7% Similarity=-0.068 Sum_probs=38.4
Q ss_pred hhhhhhhccCC---CCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 58 DTRSFLRGIDV---NQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 58 q~~~l~~~fd~---n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
|..+|..+|.. |+||+..+++++ ..++.....|..||.|++.+.
T Consensus 18 q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~ 65 (83)
T 2dmn_A 18 SVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRI 65 (83)
T ss_dssp HHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhh
Confidence 89999998866 799999999988 678889999999999987654
No 151
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=83.98 E-value=0.012 Score=45.24 Aligned_cols=45 Identities=9% Similarity=0.024 Sum_probs=40.2
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
|+.+|...|..|+||+..+++++ ..++.++..|..||+|++.+..
T Consensus 36 Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~k 81 (96)
T 3nar_A 36 QLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWK 81 (96)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhh
Confidence 99999999999999999999888 7778899999999999885543
No 152
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=83.53 E-value=0.018 Score=51.19 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=39.5
Q ss_pred CCCCCCccCCCCCCcchhhhhhhccCCCCCCCccccccccC-C---------------------CCCCCCcccCCCCCCC
Q 023113 42 KRSPWTELFHSSDRNSDTRSFLRGIDVNQAPTVADCEEENG-V---------------------SSPNSTVSSISGKRSE 99 (287)
Q Consensus 42 ~~~~w~~~~~~~~~~~q~~~l~~~fd~n~~P~~a~~e~~~~-~---------------------ssp~s~i~s~~~~~s~ 99 (287)
.|+.|... |+.+|..+|..|+||+...+++++. + ...+..|..||.|++.
T Consensus 145 ~R~~ft~~--------ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 145 NRFKWGPA--------SQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp CCCCCCHH--------HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred CCcCCCHH--------HHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 44666665 9999999999999999988888722 1 2455578889999875
Q ss_pred CC
Q 023113 100 RE 101 (287)
Q Consensus 100 r~ 101 (287)
.+
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 54
No 153
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=82.85 E-value=0.04 Score=46.01 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=38.8
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
|..+|...|..|+||+...++++ ..++.++..|.+||.|++.+
T Consensus 107 Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k 150 (155)
T 3l1p_A 107 VRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQK 150 (155)
T ss_dssp HHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeecccccccc
Confidence 99999999999999999999887 77888999999999998743
No 154
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=82.75 E-value=0.013 Score=48.63 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=39.6
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
|..+|...|..|+||+..+++++ ..++.++..|..||.|++.+.
T Consensus 98 Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~ 142 (146)
T 1au7_A 98 AKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQRE 142 (146)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhh
Confidence 99999999999999999999888 778899999999999987544
No 155
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=82.21 E-value=0.016 Score=50.51 Aligned_cols=43 Identities=9% Similarity=0.170 Sum_probs=35.0
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCC---------------------CCCCCcccCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVS---------------------SPNSTVSSISGKRSER 100 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~s---------------------sp~s~i~s~~~~~s~r 100 (287)
|+.+|...|..|+||+...++++ ...+ ..+..|..||.|++.+
T Consensus 126 ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 126 SQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp HHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 99999999999999999999887 3344 5666688899888744
No 156
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=81.99 E-value=2 Score=29.60 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=26.2
Q ss_pred hhhhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 023113 189 EVDCEYLKRCCENLTEENRRLQKEVQELRS 218 (287)
Q Consensus 189 ~~~~~~Lk~~~e~l~~en~~l~~e~~~lr~ 218 (287)
..+++.|+++++.|+.++..|..++++|++
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888999999999999999999999875
No 157
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=80.92 E-value=3.8 Score=29.00 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=16.3
Q ss_pred hhhhHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 023113 189 EVDCEYLKRCCENLTEENRRLQKEVQELRSL 219 (287)
Q Consensus 189 ~~~~~~Lk~~~e~l~~en~~l~~e~~~lr~l 219 (287)
+...+.|+.++..|..+...|+.|+..|+.+
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555543
No 158
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=80.57 E-value=0.023 Score=47.17 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=39.0
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
|..+|...|..|+||+..+++++ ..++.++..|..||.|++.+
T Consensus 104 q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k 147 (151)
T 3d1n_I 104 AIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQT 147 (151)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhc
Confidence 99999999999999999999888 77889999999999998744
No 159
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=79.84 E-value=2.9 Score=32.40 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=39.3
Q ss_pred CCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhH
Q 023113 130 RKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 182 (287)
Q Consensus 130 rkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak 182 (287)
++|..||.++...+-..+..+..... .+||+.+|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 35778999998888777765655543 368999999999999999887654
No 160
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=79.67 E-value=0.027 Score=47.30 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=39.2
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSER 100 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r 100 (287)
|..+|...|..|+||+..+++++ ..++.++..|..||.|++.+
T Consensus 112 Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 155 (160)
T 1e3o_C 112 IRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQK 155 (160)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhh
Confidence 99999999999999999999888 77889999999999998754
No 161
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=79.52 E-value=0.027 Score=47.58 Aligned_cols=45 Identities=9% Similarity=0.042 Sum_probs=40.5
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
|..+|...|..|+||+...++++ ..++.++..|..||.|++.+..
T Consensus 110 Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~k 155 (164)
T 2xsd_C 110 VKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEK 155 (164)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHh
Confidence 99999999999999999999888 7788999999999999885544
No 162
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=77.86 E-value=5.9 Score=27.59 Aligned_cols=29 Identities=31% Similarity=0.334 Sum_probs=14.1
Q ss_pred hhhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 023113 189 EVDCEYLKRCCENLTEENRRLQKEVQELR 217 (287)
Q Consensus 189 ~~~~~~Lk~~~e~l~~en~~l~~e~~~lr 217 (287)
+...+.|..++..|..+...|+.|+..|+
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555544
No 163
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=77.62 E-value=0.019 Score=44.16 Aligned_cols=45 Identities=9% Similarity=-0.086 Sum_probs=39.1
Q ss_pred hhhhhhhccCC---CCCCCccccccc-cCCCCCCCCcccCCCCCCCCCC
Q 023113 58 DTRSFLRGIDV---NQAPTVADCEEE-NGVSSPNSTVSSISGKRSEREP 102 (287)
Q Consensus 58 q~~~l~~~fd~---n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~~ 102 (287)
+..+|..||.. |+||+..+++++ ...+.....|..||.|++.|..
T Consensus 16 ~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~k 64 (89)
T 2lk2_A 16 SVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLL 64 (89)
T ss_dssp HHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhh
Confidence 78899999876 999999999888 7788899999999999886543
No 164
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=77.21 E-value=5.1 Score=28.29 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=25.3
Q ss_pred hhhhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 023113 189 EVDCEYLKRCCENLTEENRRLQKEVQELRS 218 (287)
Q Consensus 189 ~~~~~~Lk~~~e~l~~en~~l~~e~~~lr~ 218 (287)
......|....+.|..+|..|+.++..|+.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335567888999999999999999999974
No 165
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=76.71 E-value=5.6 Score=28.01 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=14.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH
Q 023113 193 EYLKRCCENLTEENRRLQKEVQELR 217 (287)
Q Consensus 193 ~~Lk~~~e~l~~en~~l~~e~~~lr 217 (287)
..|....+.|..+|..|+.++..|+
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666655554
No 166
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=76.43 E-value=5.6 Score=27.39 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=27.0
Q ss_pred hhHHHhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 023113 180 RARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRSL 219 (287)
Q Consensus 180 Rak~Krkq~~~~~~~Lk~~~e~l~~en~~l~~e~~~lr~l 219 (287)
|.+.|++. -.+.|......|..||..|..++..|+.+
T Consensus 15 rSR~RKk~---~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 15 ESRRKKKE---YVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45544443 44556677888999999999999988754
No 167
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=75.85 E-value=3.8 Score=25.57 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=21.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhh
Q 023113 195 LKRCCENLTEENRRLQKEVQELRSLK 220 (287)
Q Consensus 195 Lk~~~e~l~~en~~l~~e~~~lr~l~ 220 (287)
|....+.|..+|..|+.||..|+.+.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45567789999999999999999864
No 168
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=73.67 E-value=8.8 Score=26.93 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=32.2
Q ss_pred hhHHHhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 023113 180 RARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRSL 219 (287)
Q Consensus 180 Rak~Krkq~~~~~~~Lk~~~e~l~~en~~l~~e~~~lr~l 219 (287)
|.+......+.+.+.|..++..|..+...|+.++..|+.+
T Consensus 20 rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445567778889999999999999999999999854
No 169
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=73.51 E-value=4.7 Score=25.26 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=21.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhh
Q 023113 195 LKRCCENLTEENRRLQKEVQELRSLK 220 (287)
Q Consensus 195 Lk~~~e~l~~en~~l~~e~~~lr~l~ 220 (287)
|...++.|-.+|..|+.||..||++.
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 55567788899999999999999864
No 170
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=72.78 E-value=3.3 Score=28.07 Aligned_cols=45 Identities=20% Similarity=0.378 Sum_probs=30.9
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhh
Q 023113 132 KLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQ 177 (287)
Q Consensus 132 Rt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQ 177 (287)
|..|+.+....+...+... ........++|+++||+...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4568888876665555433 22111255899999999999999975
No 171
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=71.78 E-value=7.8 Score=28.30 Aligned_cols=45 Identities=11% Similarity=0.288 Sum_probs=32.3
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhh
Q 023113 128 ASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQ 177 (287)
Q Consensus 128 ~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQ 177 (287)
.++.+..|+.++.......+.. .. + ..+||+++|++...|..|..
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~-g~-s---~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHD-GE-S---KASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHH-TC-C---HHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHC-CC-C---HHHHHHHHCcCHHHHHHHHH
Confidence 3445678999886655556643 22 2 45889999999999999974
No 172
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=70.18 E-value=10 Score=28.56 Aligned_cols=35 Identities=29% Similarity=0.276 Sum_probs=29.9
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHhhhc
Q 023113 187 QTEVDCEYLKRCCENLTEENRRLQKEVQELRSLKL 221 (287)
Q Consensus 187 q~~~~~~~Lk~~~e~l~~en~~l~~e~~~lr~l~~ 221 (287)
..-.+++.|..+.+.+.+|+..|+.++++|+.+..
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888999999999999999999999997753
No 173
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=68.67 E-value=8.1 Score=28.05 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=19.0
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 023113 187 QTEVDCEYLKRCCENLTEENRRLQKEVQELR 217 (287)
Q Consensus 187 q~~~~~~~Lk~~~e~l~~en~~l~~e~~~lr 217 (287)
..+.....|...++.+..||..|+.+|..|.
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566666666677777777666665
No 174
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=67.03 E-value=6.9 Score=27.35 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=17.8
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 023113 192 CEYLKRCCENLTEENRRLQKEVQELRS 218 (287)
Q Consensus 192 ~~~Lk~~~e~l~~en~~l~~e~~~lr~ 218 (287)
...|....+.|..+|..|..++..|+.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777777663
No 175
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=66.88 E-value=0.14 Score=47.43 Aligned_cols=44 Identities=11% Similarity=-0.046 Sum_probs=39.8
Q ss_pred hhhhhhhccCCCCCCCccccccc-cCCCCCCCCcccCCCCCCCCC
Q 023113 58 DTRSFLRGIDVNQAPTVADCEEE-NGVSSPNSTVSSISGKRSERE 101 (287)
Q Consensus 58 q~~~l~~~fd~n~~P~~a~~e~~-~~~ssp~s~i~s~~~~~s~r~ 101 (287)
|...|.+.|..|+||+...++++ ...+.++..|..||.|+|.|.
T Consensus 376 q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~ 420 (421)
T 1mh3_A 376 ARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 420 (421)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhccccc
Confidence 88899999999999999999988 778899999999999988664
No 176
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=66.48 E-value=11 Score=24.02 Aligned_cols=30 Identities=33% Similarity=0.362 Sum_probs=23.5
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 023113 190 VDCEYLKRCCENLTEENRRLQKEVQELRSL 219 (287)
Q Consensus 190 ~~~~~Lk~~~e~l~~en~~l~~e~~~lr~l 219 (287)
++++.|-.+.+.-.+|..+|+.++.+|..+
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~El 36 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELAEV 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 466777777777888889999998888654
No 177
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=65.45 E-value=15 Score=27.91 Aligned_cols=53 Identities=25% Similarity=0.213 Sum_probs=33.2
Q ss_pred CCCccchhhhhhhhhhH----------HHhh----hhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 023113 166 NLRPRQVEVWFQNRRAR----------TKLK----QTEVDCEYLKRCCENLTEENRRLQKEVQELRS 218 (287)
Q Consensus 166 gL~~rqVqvWFQNRRak----------~Krk----q~~~~~~~Lk~~~e~l~~en~~l~~e~~~lr~ 218 (287)
||+..+|..|=|-||+- .|+. ..+.+...|..+.+.|..|+.++..|++.++.
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777666542 2222 23333444666777777777777777777764
No 178
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=65.26 E-value=33 Score=25.22 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=28.8
Q ss_pred hhhhHHHHHHhhhhHHHHHHHHHHHHHHHhhhc
Q 023113 189 EVDCEYLKRCCENLTEENRRLQKEVQELRSLKL 221 (287)
Q Consensus 189 ~~~~~~Lk~~~e~l~~en~~l~~e~~~lr~l~~ 221 (287)
+.+.+.||..+..|.+.|..|+.|+.-||.+..
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 457788999999999999999999999997654
No 179
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=65.19 E-value=13 Score=28.09 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=28.4
Q ss_pred HhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 023113 184 KLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRSL 219 (287)
Q Consensus 184 Krkq~~~~~~~Lk~~~e~l~~en~~l~~e~~~lr~l 219 (287)
-+...+.....+....+.|..||..|+.+|++|+..
T Consensus 30 SR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E 65 (87)
T 1hjb_A 30 SRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666668888899999999999999998843
No 180
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=64.06 E-value=15 Score=27.22 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=28.7
Q ss_pred HhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 023113 184 KLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRS 218 (287)
Q Consensus 184 Krkq~~~~~~~Lk~~~e~l~~en~~l~~e~~~lr~ 218 (287)
-+...+.....+....+.|..||..|+.+|..|+.
T Consensus 30 SR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 30 SRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666667888899999999999999999874
No 181
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=63.42 E-value=7.7 Score=23.82 Aligned_cols=40 Identities=10% Similarity=0.202 Sum_probs=28.4
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhh
Q 023113 134 RLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQN 178 (287)
Q Consensus 134 ~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQN 178 (287)
.++.++...+...+... .+ ..++|+.+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g--~s---~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN--VS---LHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT--CC---HHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC--CC---HHHHHHHHCcCHHHHHHHHhh
Confidence 46777765555555432 22 557899999999999999854
No 182
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=62.97 E-value=17 Score=25.10 Aligned_cols=29 Identities=34% Similarity=0.358 Sum_probs=24.9
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 023113 191 DCEYLKRCCENLTEENRRLQKEVQELRSL 219 (287)
Q Consensus 191 ~~~~Lk~~~e~l~~en~~l~~e~~~lr~l 219 (287)
....|....+.|..+|..|+.+|..|+..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999853
No 183
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=61.29 E-value=19 Score=24.98 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=30.9
Q ss_pred hhHHHhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 023113 180 RARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRSL 219 (287)
Q Consensus 180 Rak~Krkq~~~~~~~Lk~~~e~l~~en~~l~~e~~~lr~l 219 (287)
|.+.+....+...+.|..++..|..+...|+.|+..|+.+
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445667777889999999999999999999988754
No 184
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=59.55 E-value=13 Score=23.06 Aligned_cols=26 Identities=4% Similarity=0.162 Sum_probs=20.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhh
Q 023113 195 LKRCCENLTEENRRLQKEVQELRSLK 220 (287)
Q Consensus 195 Lk~~~e~l~~en~~l~~e~~~lr~l~ 220 (287)
|...++.|-.+|..|+.||..|+.+.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44556778899999999999998763
No 185
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=58.85 E-value=4 Score=25.73 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=28.5
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhh
Q 023113 134 RLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNR 179 (287)
Q Consensus 134 ~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNR 179 (287)
.++.++...+...+... .+ ..+||+.+|++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~g--~s---~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--HP---RQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--CC---HHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHcC--CC---HHHHHHHHCCCHHHHHHHHHHc
Confidence 35566655555555533 22 4588999999999999998653
No 186
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=58.63 E-value=20 Score=27.03 Aligned_cols=48 Identities=19% Similarity=0.129 Sum_probs=35.9
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 132 KLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 132 Rt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
...++..+..+|.-.++-.. -.+||..||+++..|+.+..+-+.|..-
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~s------~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGFL------VTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTCC------HHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 45689999999987664222 3689999999999999888765555443
No 187
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=58.39 E-value=14 Score=26.49 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=35.7
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 132 KLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 132 Rt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
-..++..+..+|.-.++- . .-.++|..+|++...|+.+..+-+.|.+.
T Consensus 19 ~~~Lt~~e~~vl~l~~~g---~---s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQG---L---PNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGGSCHHHHHHHHHHTTT---C---CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred HccCCHHHHHHHHHHHcC---C---CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 446899999999885322 2 34588999999999999888765555544
No 188
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=58.36 E-value=14 Score=23.05 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=21.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhh
Q 023113 195 LKRCCENLTEENRRLQKEVQELRSLK 220 (287)
Q Consensus 195 Lk~~~e~l~~en~~l~~e~~~lr~l~ 220 (287)
|...++.|-.+|..|+.||..||.+.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44567778899999999999998763
No 189
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=58.20 E-value=14 Score=26.96 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 134 RLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 134 ~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
.++..+..+|.-.|-... .-.+||..||++...|+.+...-|.+.|+
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 477888888877653222 24588999999999999887655554443
No 190
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=56.17 E-value=15 Score=24.99 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=35.0
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 132 KLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 132 Rt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
-..++..|..+|...++ .+ ...++|..+|++...|..++.+-+.+.+.
T Consensus 9 ~~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 34588999999988532 22 34579999999999999888765555444
No 191
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=56.12 E-value=11 Score=27.88 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=35.2
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 133 LRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 133 t~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
..++..+..+|.-.++-.. ..++|..||++...|+.+..+-+.|.+.
T Consensus 26 ~~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGLT------NKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHHHTTCC------HHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 3589999999988643322 3689999999999999888766655554
No 192
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=53.81 E-value=19 Score=28.79 Aligned_cols=52 Identities=8% Similarity=0.173 Sum_probs=39.0
Q ss_pred CCCCccCCHHHHHHHHHHH-hhcCCCCHHHHHHHH-HHh--CCCccchhhhhhhhh
Q 023113 129 SRKKLRLSKEQSLLLEETF-KEHSTLNPKQKLALA-KQL--NLRPRQVEVWFQNRR 180 (287)
Q Consensus 129 rrkRt~~T~~Ql~~Le~~F-~~~~~p~~~~r~~LA-~~L--gL~~rqVqvWFQNRR 180 (287)
+++|.++|.+|...+-..+ +.++..+..+....| .++ +++...|..|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 5688999999999999999 677777755433322 167 788889999987653
No 193
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=52.56 E-value=20 Score=22.42 Aligned_cols=26 Identities=12% Similarity=0.265 Sum_probs=20.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhh
Q 023113 195 LKRCCENLTEENRRLQKEVQELRSLK 220 (287)
Q Consensus 195 Lk~~~e~l~~en~~l~~e~~~lr~l~ 220 (287)
|....+.|-.+|..|+.||..|+.+.
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44556778899999999999998763
No 194
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=51.86 E-value=12 Score=25.32 Aligned_cols=47 Identities=13% Similarity=-0.098 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 134 RLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 134 ~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
.++..+..+|...|-.. ..-.++|..+|++...|+.+...-+.+.++
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47788888888776332 124588999999999999887655544443
No 195
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=50.70 E-value=26 Score=22.17 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=20.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 023113 194 YLKRCCENLTEENRRLQKEVQELRSLK 220 (287)
Q Consensus 194 ~Lk~~~e~l~~en~~l~~e~~~lr~l~ 220 (287)
.|....+.|..+|..|+.||..|+.+.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 355566778888999999999988754
No 196
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=50.20 E-value=37 Score=26.29 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=20.9
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 023113 187 QTEVDCEYLKRCCENLTEENRRLQKEVQELRS 218 (287)
Q Consensus 187 q~~~~~~~Lk~~~e~l~~en~~l~~e~~~lr~ 218 (287)
..-.....|..+.+.|+.||.+|+.|.+.-+.
T Consensus 62 ~~~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 62 RLDARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344555677777777888888777665543
No 197
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=49.97 E-value=37 Score=26.15 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 134 RLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 134 ~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
.++..|..++...|-... .-.++|..+|++...|+.|...-|.+.+.
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 478888888887754332 24588999999999999999776666554
No 198
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=49.20 E-value=25 Score=22.03 Aligned_cols=26 Identities=12% Similarity=0.293 Sum_probs=20.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhh
Q 023113 195 LKRCCENLTEENRRLQKEVQELRSLK 220 (287)
Q Consensus 195 Lk~~~e~l~~en~~l~~e~~~lr~l~ 220 (287)
|.-.++.|-.+|..|..||..|+.+.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 44456778899999999999998763
No 199
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=48.34 E-value=31 Score=25.58 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=37.1
Q ss_pred CCCccCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCC--Cccchhhhhh
Q 023113 130 RKKLRLSKEQSLLLEETFK-----EHSTLNPKQKLALAKQLNL--RPRQVEVWFQ 177 (287)
Q Consensus 130 rkRt~~T~~Ql~~Le~~F~-----~~~~p~~~~r~~LA~~LgL--~~rqVqvWFQ 177 (287)
++...++.+|+..|.+.|. .+.+.+..+-..+.+.+|+ +..+|+.+|+
T Consensus 25 ~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 25 QRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3455689999999999996 4568999999888888874 5666666664
No 200
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=48.16 E-value=21 Score=24.71 Aligned_cols=46 Identities=30% Similarity=0.395 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 134 RLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 134 ~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
.++..+..+|.-.|. . .+ ..++|..+|++...|+.+..+-+.|.+.
T Consensus 16 ~L~~~e~~vl~l~~~--g-~s---~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--G-LP---NKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHCHHHHHHHHHHTT--T-CC---HHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHc--C-CC---HHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 367888888877432 2 22 3589999999999999888765555554
No 201
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=47.67 E-value=31 Score=26.20 Aligned_cols=11 Identities=36% Similarity=0.782 Sum_probs=8.5
Q ss_pred CCCCCCCCCCC
Q 023113 235 LTMCPSCERVA 245 (287)
Q Consensus 235 ~~~c~sc~~~~ 245 (287)
...||-|++.-
T Consensus 47 g~~CPvCgs~l 57 (112)
T 1l8d_A 47 KGKCPVCGREL 57 (112)
T ss_dssp SEECTTTCCEE
T ss_pred CCCCCCCCCcC
Confidence 35799999864
No 202
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=47.56 E-value=23 Score=27.47 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=21.5
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 023113 190 VDCEYLKRCCENLTEENRRLQKEVQELR 217 (287)
Q Consensus 190 ~~~~~Lk~~~e~l~~en~~l~~e~~~lr 217 (287)
.++..|+...+.|..|+.+|+++++.|.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667778888888888888888887765
No 203
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=45.75 E-value=39 Score=25.33 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=27.3
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 023113 187 QTEVDCEYLKRCCENLTEENRRLQKEVQELRSLK 220 (287)
Q Consensus 187 q~~~~~~~Lk~~~e~l~~en~~l~~e~~~lr~l~ 220 (287)
..-.+++.|....+.+.+|...|+.++.+|+.+.
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777888888888999999999999888664
No 204
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=45.59 E-value=60 Score=24.76 Aligned_cols=47 Identities=17% Similarity=0.091 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 134 RLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 134 ~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
.++..+..+|.-.|-... .-.++|..+|++...|+.+...-|.+.|.
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 477778888877653221 24588999999999999988766665554
No 205
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=43.55 E-value=44 Score=20.17 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=15.8
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHH
Q 023113 192 CEYLKRCCENLTEENRRLQKEVQELR 217 (287)
Q Consensus 192 ~~~Lk~~~e~l~~en~~l~~e~~~lr 217 (287)
...||++...|+.|...|+-|+..|+
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666665553
No 206
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=43.45 E-value=21 Score=25.89 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=35.0
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 133 LRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 133 t~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
..++..+..+|.-.|+-.. ..++|..+|++...|+.+..+-+.|.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKGYS------NQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHHTTCC------TTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 4689999999988543221 3478999999999999988766665554
No 207
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=43.23 E-value=41 Score=29.26 Aligned_cols=34 Identities=29% Similarity=0.311 Sum_probs=26.3
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 023113 187 QTEVDCEYLKRCCENLTEENRRLQKEVQELRSLK 220 (287)
Q Consensus 187 q~~~~~~~Lk~~~e~l~~en~~l~~e~~~lr~l~ 220 (287)
..-.+++.|..+.+.+.+|+..|+.++++|+.|.
T Consensus 112 eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 112 EALKENEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777788888888888888888888887654
No 208
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=43.14 E-value=35 Score=21.57 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=20.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhh
Q 023113 195 LKRCCENLTEENRRLQKEVQELRSLK 220 (287)
Q Consensus 195 Lk~~~e~l~~en~~l~~e~~~lr~l~ 220 (287)
|....+.|..+|..|..||.+|+.+.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 45566778888899999999888764
No 209
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=42.98 E-value=26 Score=23.80 Aligned_cols=51 Identities=10% Similarity=0.091 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 134 RLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 134 ~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
.++..+..+|...|-...+- ...-.++|..+|++...|+.+...-+.+.|.
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47888888998887321111 1223578999999999999877655544443
No 210
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=42.68 E-value=29 Score=26.74 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=30.9
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHH
Q 023113 134 RLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 184 (287)
Q Consensus 134 ~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 184 (287)
.++..+..+|. .|-. ...-.++|..||++...|+.+...-|.+.|
T Consensus 109 ~L~~~~r~v~~-~~~~-----g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-----GYSYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp HSCHHHHHHHH-HHTT-----TCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc-----CCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 57777777777 3321 223568999999999999987765444444
No 211
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=41.97 E-value=29 Score=25.73 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=31.8
Q ss_pred CccCCHHHHHHHHHHHhhc--CCCCH-HHHHHHHHHhCCCccchhhhhhh
Q 023113 132 KLRLSKEQSLLLEETFKEH--STLNP-KQKLALAKQLNLRPRQVEVWFQN 178 (287)
Q Consensus 132 Rt~~T~~Ql~~Le~~F~~~--~~p~~-~~r~~LA~~LgL~~rqVqvWFQN 178 (287)
+.+|+.++....-..+... .+.+. ....++|.++|+++..|..|...
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 4568888876554444322 12221 35678999999999999999754
No 212
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=41.91 E-value=44 Score=24.84 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=19.4
Q ss_pred hhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 023113 185 LKQTEVDCEYLKRCCENLTEENRRLQKEVQELR 217 (287)
Q Consensus 185 rkq~~~~~~~Lk~~~e~l~~en~~l~~e~~~lr 217 (287)
.+........+..+.+.|..+|..|+.++++|+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444455555666777777777766664
No 213
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=41.04 E-value=31 Score=19.95 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=16.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHH
Q 023113 194 YLKRCCENLTEENRRLQKEVQEL 216 (287)
Q Consensus 194 ~Lk~~~e~l~~en~~l~~e~~~l 216 (287)
.||-+...|+-|-+.|+.|+..|
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 36667777788888888877665
No 214
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=41.00 E-value=46 Score=26.18 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=33.2
Q ss_pred CCCccCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCCCccc
Q 023113 130 RKKLRLSKEQSLLLEETFK-----EHSTLNPKQKLALAKQLNLRPRQ 171 (287)
Q Consensus 130 rkRt~~T~~Ql~~Le~~F~-----~~~~p~~~~r~~LA~~LgL~~rq 171 (287)
.+|..+|.+|+..|..+|. .+.+.+..+-..+.+.||+.+..
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~ 51 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPD 51 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCH
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccH
Confidence 4567799999999999996 35689999988888888876544
No 215
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=40.24 E-value=41 Score=23.13 Aligned_cols=48 Identities=8% Similarity=0.066 Sum_probs=34.3
Q ss_pred cCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHH
Q 023113 134 RLSKEQSLLLEETFKEH--STLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 184 (287)
Q Consensus 134 ~~T~~Ql~~Le~~F~~~--~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 184 (287)
.++..+..+|...|-.. .-.+ -.++|..+|++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s---~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHT---LEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCC---HHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCC---HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 47888999998888411 1122 358899999999999988765554444
No 216
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=39.84 E-value=41 Score=24.65 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=13.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHH
Q 023113 195 LKRCCENLTEENRRLQKEVQELR 217 (287)
Q Consensus 195 Lk~~~e~l~~en~~l~~e~~~lr 217 (287)
|+.....+.+|++.|+.++..|+
T Consensus 52 L~~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 52 LEDSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666665554
No 217
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=39.13 E-value=61 Score=23.17 Aligned_cols=49 Identities=8% Similarity=0.093 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 134 RLSKEQSLLLEETFKEH--STLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 134 ~~T~~Ql~~Le~~F~~~--~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
.++..+..+|...|-.. .-.+ -.+||..+|++...|+.+...-+.+.|.
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s---~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKT---LEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCC---HHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCCCCCC---HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 47888889998887421 1123 4578999999999999987655555443
No 218
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=39.06 E-value=48 Score=20.67 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=19.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhh
Q 023113 195 LKRCCENLTEENRRLQKEVQELRSL 219 (287)
Q Consensus 195 Lk~~~e~l~~en~~l~~e~~~lr~l 219 (287)
|.-..+.|..+|..|..||..|+.+
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4445677888999999999999865
No 219
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=37.83 E-value=60 Score=20.10 Aligned_cols=26 Identities=19% Similarity=0.083 Sum_probs=20.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhh
Q 023113 195 LKRCCENLTEENRRLQKEVQELRSLK 220 (287)
Q Consensus 195 Lk~~~e~l~~en~~l~~e~~~lr~l~ 220 (287)
|.-..+.|..+|..|..||..|+.+.
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 44456778889999999999998763
No 220
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=37.82 E-value=38 Score=23.75 Aligned_cols=29 Identities=38% Similarity=0.242 Sum_probs=20.4
Q ss_pred hhhhhhhHHHHHHhhhhHHHHHHHHHHHH
Q 023113 186 KQTEVDCEYLKRCCENLTEENRRLQKEVQ 214 (287)
Q Consensus 186 kq~~~~~~~Lk~~~e~l~~en~~l~~e~~ 214 (287)
...+...+.|+.++..|..+...|+.++.
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666688888888888888887764
No 221
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=37.62 E-value=71 Score=21.06 Aligned_cols=27 Identities=41% Similarity=0.487 Sum_probs=15.8
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHHH
Q 023113 187 QTEVDCEYLKRCCENLTEENRRLQKEV 213 (287)
Q Consensus 187 q~~~~~~~Lk~~~e~l~~en~~l~~e~ 213 (287)
|.+.+-..|.+....|+.|..+|..||
T Consensus 21 qlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 21 QLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 334444455566666666666666665
No 222
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=36.07 E-value=80 Score=23.32 Aligned_cols=39 Identities=23% Similarity=0.432 Sum_probs=25.3
Q ss_pred hhhhHHHhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 023113 178 NRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQEL 216 (287)
Q Consensus 178 NRRak~Krkq~~~~~~~Lk~~~e~l~~en~~l~~e~~~l 216 (287)
+||.+.+-.+...+.+.|++-.+.|.+....|..-+.+|
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l 51 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRL 51 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467777777777777777777666665555555444444
No 223
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=35.35 E-value=1.1e+02 Score=24.34 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=42.4
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 023113 132 KLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQK 211 (287)
Q Consensus 132 Rt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~~~~~~Lk~~~e~l~~en~~l~~ 211 (287)
...|+.+++..|... .. .+.+|++-..|+..+...+.... ....-...|....+.+.++...|+.
T Consensus 52 ~R~Y~~~dl~~l~~I------------~~-lr~~G~sL~eIk~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~i~~L~~ 116 (148)
T 3gpv_A 52 DRIFNEEALKYLEMI------------LC-LKNTGMPIQKIKQFIDWSMEGDS--TILHRLKLMKQQEANVLQLIQDTEK 116 (148)
T ss_dssp CEEBCHHHHHHHHHH------------HH-HHTTTCCHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeecCHHHHHHHHHH------------HH-HHHcCCCHHHHHHHHHhhhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899998888544 22 36778888888877764432111 1112234455566666666666666
Q ss_pred HHHHHH
Q 023113 212 EVQELR 217 (287)
Q Consensus 212 e~~~lr 217 (287)
..+.|.
T Consensus 117 ~~~~L~ 122 (148)
T 3gpv_A 117 NLKKIQ 122 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665555
No 224
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.06 E-value=51 Score=22.38 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=13.1
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHH
Q 023113 190 VDCEYLKRCCENLTEENRRLQKEV 213 (287)
Q Consensus 190 ~~~~~Lk~~~e~l~~en~~l~~e~ 213 (287)
.++..|+..++.|.++++.|+..+
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544
No 225
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=33.75 E-value=1.3e+02 Score=23.50 Aligned_cols=73 Identities=10% Similarity=-0.012 Sum_probs=44.9
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 023113 132 KLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQK 211 (287)
Q Consensus 132 Rt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~~~~~~Lk~~~e~l~~en~~l~~ 211 (287)
...|+..++..|... ...+.+|++-..|+.++........ ....-...|....+.+.++...|+.
T Consensus 36 ~R~Y~~~dl~~l~~I-------------~~lr~~G~sl~eI~~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~i~~L~~ 100 (135)
T 1q06_A 36 YRTYTQQHLNELTLL-------------RQARQVGFNLEESGELVNLFNDPQR--HSADVKRRTLEKVAEIERHIEELQS 100 (135)
T ss_dssp CEECCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHHHHHCTTC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHHhhhcCCc--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446999998888543 2247788888888888865432111 0111234556666667777777777
Q ss_pred HHHHHHhh
Q 023113 212 EVQELRSL 219 (287)
Q Consensus 212 e~~~lr~l 219 (287)
..+.|..+
T Consensus 101 ~~~~L~~~ 108 (135)
T 1q06_A 101 MRDQLLAL 108 (135)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 226
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=33.33 E-value=57 Score=23.89 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=32.8
Q ss_pred CCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhH
Q 023113 130 RKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 182 (287)
Q Consensus 130 rkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak 182 (287)
.....||..+..+|.-.++- + ...+||..||++++.|+....+=+.|
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~~G--~----s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVEKG--F----TNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ----CCCHHHHHHHHHHHTT--C----CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34557999999999887632 1 25688999999999999766554443
No 227
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=32.61 E-value=28 Score=28.78 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 134 RLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 134 ~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
.++..+..+|...|-.. ....+||..+|++...|+.+...-|.+.|+
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 46777777887776322 234588999999999999887655554443
No 228
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=32.13 E-value=55 Score=23.70 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=12.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHH
Q 023113 195 LKRCCENLTEENRRLQKEVQELR 217 (287)
Q Consensus 195 Lk~~~e~l~~en~~l~~e~~~lr 217 (287)
|+...+.+..|.+.|+.++..|+
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555554
No 229
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.03 E-value=1e+02 Score=20.79 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=18.0
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 023113 187 QTEVDCEYLKRCCENLTEENRRLQKEVQELR 217 (287)
Q Consensus 187 q~~~~~~~Lk~~~e~l~~en~~l~~e~~~lr 217 (287)
....++..|-..|+.|.+.....+.++..|+
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666665555555555555
No 230
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=31.29 E-value=67 Score=28.76 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=21.1
Q ss_pred hhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 023113 185 LKQTEVDCEYLKRCCENLTEENRRLQKEVQELR 217 (287)
Q Consensus 185 rkq~~~~~~~Lk~~~e~l~~en~~l~~e~~~lr 217 (287)
.......+++|+.....++.|..+|+.|++.|+
T Consensus 63 l~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 63 IDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455566666666667777777777776664
No 231
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=31.10 E-value=40 Score=24.18 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=34.3
Q ss_pred cCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCccchhhhhh
Q 023113 134 RLSKEQSLLLEETFKE-----HSTLNPKQKLALAKQLNLRPRQVEVWFQ 177 (287)
Q Consensus 134 ~~T~~Ql~~Le~~F~~-----~~~p~~~~r~~LA~~LgL~~rqVqvWFQ 177 (287)
.++.++...+.+.|.. +.+.+..+-..+...+|++...|+.+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4688899999999973 4568888888888888988877776654
No 232
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=30.51 E-value=68 Score=19.09 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=17.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHh
Q 023113 195 LKRCCENLTEENRRLQKEVQELRS 218 (287)
Q Consensus 195 Lk~~~e~l~~en~~l~~e~~~lr~ 218 (287)
|..-...|..||..|+..|++|-+
T Consensus 4 lnallasleaenkqlkakveella 27 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456678899999998888754
No 233
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=30.14 E-value=46 Score=23.96 Aligned_cols=43 Identities=28% Similarity=0.228 Sum_probs=25.2
Q ss_pred hhhhhhHHH-hhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 023113 176 FQNRRARTK-LKQTEVDCEYLKRCCENLTEENRRLQKEVQELRS 218 (287)
Q Consensus 176 FQNRRak~K-rkq~~~~~~~Lk~~~e~l~~en~~l~~e~~~lr~ 218 (287)
.|||-+.-. +...+..+..|......|..++..|..|+..|+.
T Consensus 14 ~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~ 57 (70)
T 1gd2_E 14 AQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQ 57 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355533321 2333445555666777777777777777777764
No 234
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=30.08 E-value=57 Score=20.39 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=10.6
Q ss_pred HHHHHhhhhHHHHHHHHHHH
Q 023113 194 YLKRCCENLTEENRRLQKEV 213 (287)
Q Consensus 194 ~Lk~~~e~l~~en~~l~~e~ 213 (287)
...++.+.|+..|..|+.++
T Consensus 11 a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHH
Confidence 34444555555555555554
No 235
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=30.04 E-value=29 Score=24.64 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=35.9
Q ss_pred ccCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCCCccchhhhhh
Q 023113 133 LRLSKEQSLLLEETFK-----EHSTLNPKQKLALAKQLNLRPRQVEVWFQ 177 (287)
Q Consensus 133 t~~T~~Ql~~Le~~F~-----~~~~p~~~~r~~LA~~LgL~~rqVqvWFQ 177 (287)
..++.+++..|...|. .+.+.+..+...+...+|++..+|+.+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 4578889999999986 35578888888888889988877777774
No 236
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=29.98 E-value=2.1e+02 Score=22.68 Aligned_cols=34 Identities=9% Similarity=-0.000 Sum_probs=23.2
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhh
Q 023113 132 KLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQN 178 (287)
Q Consensus 132 Rt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQN 178 (287)
...|+.+++..|... .. .+.+|++-..|+..+..
T Consensus 38 ~R~Y~~~dl~~l~~I------------~~-lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 38 VRKFGAEDLRWILFT------------RQ-MRRAGLSIEALIDYLAL 71 (142)
T ss_dssp CBCBCHHHHHHHHHH------------HH-HHHTTCCHHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHH------------HH-HHHcCCCHHHHHHHHHH
Confidence 457899999888544 22 36677777777766654
No 237
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=29.04 E-value=40 Score=21.68 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhh
Q 023113 137 KEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQ 177 (287)
Q Consensus 137 ~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQ 177 (287)
.++...+...|... + ...++|+.+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 55655555555432 2 245789999999999998874
No 238
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=28.57 E-value=80 Score=18.37 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=5.3
Q ss_pred hhHHHHHHHHHHH
Q 023113 201 NLTEENRRLQKEV 213 (287)
Q Consensus 201 ~l~~en~~l~~e~ 213 (287)
.|+.|...|.-|+
T Consensus 11 rlkqeiaaleyei 23 (28)
T 3ra3_B 11 RLKQEIAALEYEI 23 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 239
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=28.27 E-value=1e+02 Score=18.56 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=21.1
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 023113 192 CEYLKRCCENLTEENRRLQKEVQELRS 218 (287)
Q Consensus 192 ~~~Lk~~~e~l~~en~~l~~e~~~lr~ 218 (287)
...||+....|+..|-..++.|+.||.
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrh 29 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456777777888888888888888875
No 240
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=28.25 E-value=1.5e+02 Score=21.37 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCccchhhhhhhhhhHHHhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 023113 158 KLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRS 218 (287)
Q Consensus 158 r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~~~~~~Lk~~~e~l~~en~~l~~e~~~lr~ 218 (287)
....++.+|++-..|+..+..+..... .....-...|....+.+.++...|+.....|..
T Consensus 8 ~I~~lr~lGfsL~eIk~~l~~~~~~~~-~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~ 67 (99)
T 1q08_A 8 FIRHARQLGFSLESIRELLSIRIDPEH-HTCQESKGIVQERLQEVEARIAELQSMQRSLQR 67 (99)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHCGGG-CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHhCCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999876532110 011122345666666677777777666666653
No 241
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=28.03 E-value=1e+02 Score=18.54 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=19.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHh
Q 023113 193 EYLKRCCENLTEENRRLQKEVQELRS 218 (287)
Q Consensus 193 ~~Lk~~~e~l~~en~~l~~e~~~lr~ 218 (287)
..|.++......||-.|.+||.+|..
T Consensus 4 aqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34556666778899999999988854
No 242
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=27.88 E-value=29 Score=22.74 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=21.6
Q ss_pred HHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 159 LALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 159 ~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
.++|..+|+++..|+.+..+-+.|.+.
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 588999999999999888765555544
No 243
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=27.74 E-value=20 Score=23.37 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCccchhhhhhhhh
Q 023113 158 KLALAKQLNLRPRQVEVWFQNRR 180 (287)
Q Consensus 158 r~~LA~~LgL~~rqVqvWFQNRR 180 (287)
..+||+.+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998754
No 244
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=27.40 E-value=63 Score=24.40 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=31.6
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhh
Q 023113 133 LRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNR 179 (287)
Q Consensus 133 t~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNR 179 (287)
..++.++...+...+... + + ..++|+.+|++...|..|+..-
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~-s---~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V-S---LHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C-C---HHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHcC-C-C---HHHHHHHHCcCHHHHHHHHHcc
Confidence 457888877777777533 2 2 4578999999999999999653
No 245
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=27.38 E-value=41 Score=24.34 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCCCccchhhhhh
Q 023113 135 LSKEQSLLLEETFK-----EHSTLNPKQKLALAKQLNLRPRQVEVWFQ 177 (287)
Q Consensus 135 ~T~~Ql~~Le~~F~-----~~~~p~~~~r~~LA~~LgL~~rqVqvWFQ 177 (287)
++.++...|.+.|. .+.+.+..+-..+...+|++...|+.+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57788899999985 34578888888887888888877776664
No 246
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=27.27 E-value=1.4e+02 Score=22.36 Aligned_cols=66 Identities=21% Similarity=0.193 Sum_probs=41.1
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 023113 132 KLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQK 211 (287)
Q Consensus 132 Rt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~~~~~~Lk~~~e~l~~en~~l~~ 211 (287)
...|+.+++..|... .. .+.+|++-..|+.++...-. .....|....+.+.++...|+.
T Consensus 37 ~R~Y~~~dl~~l~~I------------~~-lr~~G~sl~~I~~~l~~~~~--------~~~~~l~~~~~~l~~~i~~l~~ 95 (108)
T 2vz4_A 37 HRRYSDADLDRLQQI------------LF-YRELGFPLDEVAALLDDPAA--------DPRAHLRRQHELLSARIGKLQK 95 (108)
T ss_dssp CEEBCHHHHHHHHHH------------HH-HHHTTCCHHHHHHHHTC-------------CCHHHHHHHHHHHHHHHHHH
T ss_pred CeecCHHHHHHHHHH------------HH-HHHCCCCHHHHHHHHhCCcH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 456899998888543 22 36788888888888865311 1233456666666777777766
Q ss_pred HHHHHHh
Q 023113 212 EVQELRS 218 (287)
Q Consensus 212 e~~~lr~ 218 (287)
..+.|..
T Consensus 96 ~~~~l~~ 102 (108)
T 2vz4_A 96 MAAAVEQ 102 (108)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666653
No 247
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=27.26 E-value=88 Score=23.26 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=6.5
Q ss_pred hhHHHHHHhhhhHHHH
Q 023113 191 DCEYLKRCCENLTEEN 206 (287)
Q Consensus 191 ~~~~Lk~~~e~l~~en 206 (287)
+.+.||..+..|..++
T Consensus 28 EieELKekN~~L~~e~ 43 (81)
T 2jee_A 28 EIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444433333
No 248
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=26.63 E-value=85 Score=26.99 Aligned_cols=47 Identities=19% Similarity=0.091 Sum_probs=35.8
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 133 LRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 133 t~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
..++..+..+|.-.|+.. .-.++|..||+++..|++...+-|.|.|.
T Consensus 196 ~~L~~~erevl~L~~~G~------s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCIRKGL------SSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 468999999988865322 24578999999999999988766666554
No 249
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=26.62 E-value=22 Score=23.33 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCccchhhhhhhhh
Q 023113 158 KLALAKQLNLRPRQVEVWFQNRR 180 (287)
Q Consensus 158 r~~LA~~LgL~~rqVqvWFQNRR 180 (287)
..+||+.+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 45799999999999999998754
No 250
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=26.40 E-value=24 Score=24.60 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCccchhhhhhhhh
Q 023113 158 KLALAKQLNLRPRQVEVWFQNRR 180 (287)
Q Consensus 158 r~~LA~~LgL~~rqVqvWFQNRR 180 (287)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998755
No 251
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.20 E-value=1.3 Score=36.70 Aligned_cols=29 Identities=3% Similarity=-0.075 Sum_probs=21.4
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCH
Q 023113 127 DASRKKLRLSKEQSLLLEETFKEHSTLNP 155 (287)
Q Consensus 127 ~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~ 155 (287)
+.+|.|+.|+..|++.|+..|+.++||..
T Consensus 135 ~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 135 GGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp ------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 56788899999999999999999999864
No 252
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=26.11 E-value=52 Score=26.22 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 135 LSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 135 ~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
++..+..+|.-.|-.. . .-.++|..+|++...|+.+...-|.+.|+
T Consensus 141 L~~~~r~vl~l~~~~g--~---s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 141 LPEDLRMAITLRELDG--L---SYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp SCHHHHHHHHHHHTTC--C---CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 6666777776654322 1 23588999999999999887655554443
No 253
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=25.45 E-value=82 Score=22.90 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=18.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhh
Q 023113 195 LKRCCENLTEENRRLQKEVQELRSL 219 (287)
Q Consensus 195 Lk~~~e~l~~en~~l~~e~~~lr~l 219 (287)
|+.+.+.|.+|+..|+.++++...+
T Consensus 55 Lq~~~~~L~~e~~~L~~~~~~~~~~ 79 (82)
T 1am9_A 55 LQHSNQKLKQENLSLRTAVHKSKSL 79 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 6667777778888888877776554
No 254
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=25.43 E-value=1.7e+02 Score=23.29 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=40.5
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 023113 132 KLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQK 211 (287)
Q Consensus 132 Rt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~~~~~~Lk~~~e~l~~en~~l~~ 211 (287)
+..|+..++..|... ...+.+|++-..|+..+..... ........|....+.+.++...|+.
T Consensus 40 ~R~Y~~~dl~~l~~I-------------~~lr~~G~sl~~I~~~l~~~~~-----~~~~~~~~L~~q~~~L~~~i~~l~~ 101 (146)
T 3hh0_A 40 HRLYTKDDLYVLQQI-------------QSFKHLGFSLGEIQNIILQRDI-----ETEVFLRQMHFQREVLLAEQERIAK 101 (146)
T ss_dssp CEEBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHTSSEE-----EHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEeeCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHccCC-----CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456999998888544 2235677777777777764321 1112233455555566666666666
Q ss_pred HHHHHH
Q 023113 212 EVQELR 217 (287)
Q Consensus 212 e~~~lr 217 (287)
.++.|.
T Consensus 102 ~l~~l~ 107 (146)
T 3hh0_A 102 VLSHMD 107 (146)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 255
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=24.99 E-value=1.1e+02 Score=25.72 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=36.0
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 132 KLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 132 Rt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
...+|..+..+|.-.++-. .-.++|..||++++.|+....|-+.|..-
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 4569999999997754322 23688999999999999988766655443
No 256
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=24.95 E-value=24 Score=23.44 Aligned_cols=24 Identities=8% Similarity=0.167 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCccchhhhhhhhhh
Q 023113 158 KLALAKQLNLRPRQVEVWFQNRRA 181 (287)
Q Consensus 158 r~~LA~~LgL~~rqVqvWFQNRRa 181 (287)
..+||+.+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 457999999999999999987654
No 257
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=24.50 E-value=26 Score=23.68 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCccchhhhhhhhh
Q 023113 158 KLALAKQLNLRPRQVEVWFQNRR 180 (287)
Q Consensus 158 r~~LA~~LgL~~rqVqvWFQNRR 180 (287)
..+||+.+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999998754
No 258
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=24.07 E-value=38 Score=26.92 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHh
Q 023113 135 LSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 185 (287)
Q Consensus 135 ~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kr 185 (287)
++..+..+|.-.|-..-. -.+||..+|+++..|+.+...-|.+.|+
T Consensus 136 L~~~~r~vl~l~~~~g~s-----~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDLT-----HRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SCHHHHHHHHHHHHSCCS-----SCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCC-----HHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 555555555554322211 1267888899999998888765555443
No 259
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=24.02 E-value=1.7e+02 Score=22.91 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhh
Q 023113 114 CSRGSDDEDGGAGDASRKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQ 177 (287)
Q Consensus 114 ~s~~~~~~~~~~~~~rrkRt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQ 177 (287)
+-..+......-+........++.++...+...+.... ...++|+.+|++...|..|++
T Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~s~e~r~~ii~l~~~G~-----s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 5 SIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGV-----RPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp CCCCSCSSCCCCCCTTSSSCSSCHHHHHHHHHHHHHTC-----CHHHHHHHHTCCSHHHHHHHC
T ss_pred hhhhcchhhhhcCCcCCCCCCCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHH
No 260
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=23.72 E-value=33 Score=27.12 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhH
Q 023113 140 SLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 182 (287)
Q Consensus 140 l~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak 182 (287)
+..-.+.|.+..| . ....+||++.|++..-|-..|.|+-.=
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L 61 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREAL 61 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHH
Confidence 4455666888888 5 678899999999999999999987543
No 261
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=23.65 E-value=1.4e+02 Score=18.64 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=19.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhh
Q 023113 195 LKRCCENLTEENRRLQKEVQELRSL 219 (287)
Q Consensus 195 Lk~~~e~l~~en~~l~~e~~~lr~l 219 (287)
|.-..+.|..++..|..||..|+.+
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344566888899999999998875
No 262
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=23.56 E-value=45 Score=24.30 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=24.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhhh
Q 023113 140 SLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEV 190 (287)
Q Consensus 140 l~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~~ 190 (287)
+.++.-.|+.|+||.+.-... | -.|||-+|+..|...
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHHH
Confidence 455666689999998642211 1 158999998876543
No 263
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=23.27 E-value=1e+02 Score=21.00 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=12.8
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHH
Q 023113 192 CEYLKRCCENLTEENRRLQKEVQ 214 (287)
Q Consensus 192 ~~~Lk~~~e~l~~en~~l~~e~~ 214 (287)
++.|-++.+.|+.||--|++|++
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Confidence 34455555556666666666553
No 264
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=22.82 E-value=29 Score=23.38 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCccchhhhhhhhh
Q 023113 158 KLALAKQLNLRPRQVEVWFQNRR 180 (287)
Q Consensus 158 r~~LA~~LgL~~rqVqvWFQNRR 180 (287)
..+||+.+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999998754
No 265
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=22.82 E-value=2.4e+02 Score=20.94 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=41.4
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHHhhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 023113 132 KLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQK 211 (287)
Q Consensus 132 Rt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~Krkq~~~~~~~Lk~~~e~l~~en~~l~~ 211 (287)
...|+.+++..|... .. .+.+|++-..|+..+..... .....|....+.+.++.+.|+.
T Consensus 38 ~R~Y~~~dl~~l~~I------------~~-l~~~G~~l~~I~~~l~~~~~--------~~~~~l~~~~~~l~~~i~~l~~ 96 (109)
T 1r8d_A 38 YRLYSDADLERLQQI------------LF-FKEIGFRLDEIKEMLDHPNF--------DRKAALQSQKEILMKKKQRMDE 96 (109)
T ss_dssp CEEBCHHHHHHHHHH------------HH-HHHTTCCHHHHHHHHHCTTS--------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHH------------HH-HHHCCCCHHHHHHHHhCCCH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 346999998888543 12 35677777777776654211 1234566666667777777777
Q ss_pred HHHHHHh
Q 023113 212 EVQELRS 218 (287)
Q Consensus 212 e~~~lr~ 218 (287)
.++.|..
T Consensus 97 ~~~~l~~ 103 (109)
T 1r8d_A 97 MIQTIDR 103 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666653
No 266
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=22.75 E-value=1e+02 Score=22.39 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=23.8
Q ss_pred hhHHHhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 023113 180 RARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQE 215 (287)
Q Consensus 180 Rak~Krkq~~~~~~~Lk~~~e~l~~en~~l~~e~~~ 215 (287)
+|..-.+..+.....|..+.+.|..+++.|+.++++
T Consensus 44 kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 44 KAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444445566666666777777777777777777654
No 267
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=22.66 E-value=57 Score=22.18 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=12.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHH
Q 023113 197 RCCENLTEENRRLQKEVQELR 217 (287)
Q Consensus 197 ~~~e~l~~en~~l~~e~~~lr 217 (287)
...+.|..+...|..|+..|+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666555
No 268
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=22.26 E-value=1.9e+02 Score=21.48 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=19.7
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 023113 191 DCEYLKRCCENLTEENRRLQKEVQELRS 218 (287)
Q Consensus 191 ~~~~Lk~~~e~l~~en~~l~~e~~~lr~ 218 (287)
++......|..|.+|.+.|++++.+|++
T Consensus 46 kL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334455677788888888888888763
No 269
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=22.14 E-value=30 Score=23.39 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCccchhhhhhhhh
Q 023113 158 KLALAKQLNLRPRQVEVWFQNRR 180 (287)
Q Consensus 158 r~~LA~~LgL~~rqVqvWFQNRR 180 (287)
..+||+.+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 45799999999999999998754
No 270
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=21.98 E-value=72 Score=21.76 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=15.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHH
Q 023113 194 YLKRCCENLTEENRRLQKEVQELR 217 (287)
Q Consensus 194 ~Lk~~~e~l~~en~~l~~e~~~lr 217 (287)
.+-..++.+..||..|+.++..|.
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567777788888887776654
No 271
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=21.86 E-value=32 Score=23.29 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCccchhhhhhhhh
Q 023113 158 KLALAKQLNLRPRQVEVWFQNRR 180 (287)
Q Consensus 158 r~~LA~~LgL~~rqVqvWFQNRR 180 (287)
..+||+.+|++...|.-|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999998753
No 272
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=21.68 E-value=2e+02 Score=21.42 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHH
Q 023113 134 RLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 184 (287)
Q Consensus 134 ~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 184 (287)
.++..|..++.-.|-...+ ....-.++|..+|++...|+.....-+.+.|
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR 68 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLR 68 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4677788888777743211 1123458899999999999886654444433
No 273
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.34 E-value=1.1e+02 Score=21.93 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=21.5
Q ss_pred hhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 023113 185 LKQTEVDCEYLKRCCENLTEENRRLQKEVQEL 216 (287)
Q Consensus 185 rkq~~~~~~~Lk~~~e~l~~en~~l~~e~~~l 216 (287)
.+........|..+.+.|..++..|+.++..|
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566667777777778888887776543
No 274
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=21.24 E-value=32 Score=22.63 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCccchhhhhhhhhh
Q 023113 158 KLALAKQLNLRPRQVEVWFQNRRA 181 (287)
Q Consensus 158 r~~LA~~LgL~~rqVqvWFQNRRa 181 (287)
..+||+.+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 457999999999999999987654
No 275
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.78 E-value=76 Score=28.42 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=27.4
Q ss_pred HhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 023113 184 KLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR 217 (287)
Q Consensus 184 Krkq~~~~~~~Lk~~~e~l~~en~~l~~e~~~lr 217 (287)
+.++.+.++..|...++.|.++...+++|+..|+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lk 88 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALR 88 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666778888889989999999999998877
No 276
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=20.73 E-value=71 Score=25.59 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=29.3
Q ss_pred ccCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCCCcc
Q 023113 133 LRLSKEQSLLLEETFK-----EHSTLNPKQKLALAKQLNLRPR 170 (287)
Q Consensus 133 t~~T~~Ql~~Le~~F~-----~~~~p~~~~r~~LA~~LgL~~r 170 (287)
+.||.+|+..|...|. .+.+.+..+-..+.+.+|+...
T Consensus 3 ~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 3 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 4688899999999986 3457888888888888876544
No 277
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=20.43 E-value=35 Score=22.81 Aligned_cols=23 Identities=22% Similarity=0.016 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCccchhhhhhhhh
Q 023113 158 KLALAKQLNLRPRQVEVWFQNRR 180 (287)
Q Consensus 158 r~~LA~~LgL~~rqVqvWFQNRR 180 (287)
..+||+.+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45799999999999999987753
No 278
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=20.40 E-value=1.1e+02 Score=25.79 Aligned_cols=47 Identities=15% Similarity=0.076 Sum_probs=34.8
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhhhHHH
Q 023113 132 KLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 184 (287)
Q Consensus 132 Rt~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 184 (287)
...+|..+..+|.-.++ . ..-.++|..||+++..|+....|-+.|..
T Consensus 171 ~~~Lt~~e~~vl~~~~~--g----~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV--G----KTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHTT--T----CCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 45699999999977532 1 22458899999999999988776555543
No 279
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=20.35 E-value=1.4e+02 Score=20.23 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=32.2
Q ss_pred ccCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCCC--ccc---hhhhh
Q 023113 133 LRLSKEQSLLLEETFK-----EHSTLNPKQKLALAKQLNLR--PRQ---VEVWF 176 (287)
Q Consensus 133 t~~T~~Ql~~Le~~F~-----~~~~p~~~~r~~LA~~LgL~--~rq---VqvWF 176 (287)
..++.+++..|...|. .+.+.+..+...+...+|.. ..+ |..+|
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 59 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEA 59 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3477888999999985 35678998888888888854 444 55555
No 280
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=20.22 E-value=2.3e+02 Score=19.82 Aligned_cols=13 Identities=23% Similarity=0.675 Sum_probs=8.4
Q ss_pred ccchhhhhhhhhh
Q 023113 169 PRQVEVWFQNRRA 181 (287)
Q Consensus 169 ~rqVqvWFQNRRa 181 (287)
...+..||+.+-.
T Consensus 26 r~EaE~~y~~k~e 38 (77)
T 3trt_A 26 LQEAEEWYKSKFA 38 (77)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3456779987543
No 281
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=20.05 E-value=1.5e+02 Score=21.53 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=30.4
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhh
Q 023113 134 RLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNR 179 (287)
Q Consensus 134 ~~T~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~rqVqvWFQNR 179 (287)
.++.++...+...+.. .+ + ..++|+.+|++...|..|+..-
T Consensus 17 ~~s~~~r~~i~~~~~~-g~-s---~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAAD-GI-R---PCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCCHHHHHHHHHHHHT-TC-C---HHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-CC-C---HHHHHHHHCcCHHHHHHHHHHH
Confidence 5788777766666653 22 3 3578999999999999998653
Done!