Query 023114
Match_columns 287
No_of_seqs 182 out of 1380
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:32:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0637 Predicted phosphatase/ 100.0 2.5E-30 5.5E-35 216.3 17.3 183 73-271 1-187 (221)
2 PRK13226 phosphoglycolate phos 100.0 2.2E-29 4.7E-34 212.3 18.6 184 73-272 11-197 (229)
3 PLN03243 haloacid dehalogenase 100.0 4.1E-29 9E-34 213.5 20.5 183 72-271 22-210 (260)
4 TIGR02253 CTE7 HAD superfamily 100.0 6.7E-29 1.5E-33 208.2 20.4 193 73-274 1-199 (221)
5 PRK10826 2-deoxyglucose-6-phos 100.0 9.5E-29 2.1E-33 207.5 21.3 188 71-273 4-195 (222)
6 PLN02770 haloacid dehalogenase 100.0 5.3E-29 1.1E-33 212.3 19.3 186 70-272 18-210 (248)
7 PRK13288 pyrophosphatase PpaX; 100.0 6.2E-29 1.3E-33 207.5 18.9 188 72-279 1-191 (214)
8 COG0546 Gph Predicted phosphat 100.0 9.1E-29 2E-33 207.2 19.8 185 72-272 2-191 (220)
9 KOG3085 Predicted hydrolase (H 100.0 4.4E-29 9.6E-34 205.9 17.0 217 70-286 3-229 (237)
10 TIGR01422 phosphonatase phosph 100.0 1.7E-28 3.6E-33 210.1 19.8 195 74-274 2-205 (253)
11 PRK11587 putative phosphatase; 100.0 1.3E-28 2.8E-33 206.2 18.2 181 72-273 1-185 (218)
12 TIGR03351 PhnX-like phosphonat 100.0 2.5E-28 5.5E-33 204.6 19.9 190 74-279 1-200 (220)
13 PLN02575 haloacid dehalogenase 100.0 3.5E-28 7.5E-33 215.1 20.7 185 73-272 130-318 (381)
14 TIGR02252 DREG-2 REG-2-like, H 100.0 3.3E-28 7E-33 201.5 19.0 192 75-268 1-203 (203)
15 TIGR01449 PGP_bact 2-phosphogl 100.0 3.4E-28 7.5E-33 202.7 19.3 182 77-274 1-189 (213)
16 PRK13478 phosphonoacetaldehyde 100.0 8.8E-28 1.9E-32 207.1 20.5 197 72-274 2-207 (267)
17 TIGR01428 HAD_type_II 2-haloal 100.0 2E-28 4.3E-33 202.0 15.5 103 170-273 92-195 (198)
18 TIGR01990 bPGM beta-phosphoglu 100.0 1.1E-27 2.4E-32 195.3 18.1 179 76-270 1-185 (185)
19 TIGR02254 YjjG/YfnB HAD superf 100.0 1.7E-27 3.6E-32 200.0 19.0 193 74-272 1-200 (224)
20 PRK09449 dUMP phosphatase; Pro 100.0 2.6E-27 5.5E-32 199.1 19.5 190 72-271 1-197 (224)
21 PRK13223 phosphoglycolate phos 100.0 1.8E-27 3.9E-32 205.3 18.8 189 70-272 9-203 (272)
22 TIGR01454 AHBA_synth_RP 3-amin 100.0 2.4E-27 5.2E-32 196.6 18.9 182 77-280 1-185 (205)
23 PLN02940 riboflavin kinase 100.0 1.3E-27 2.8E-32 215.0 18.2 185 74-273 11-197 (382)
24 PRK10725 fructose-1-P/6-phosph 100.0 1.5E-27 3.2E-32 195.1 17.0 180 73-270 4-186 (188)
25 PRK10563 6-phosphogluconate ph 100.0 2E-27 4.4E-32 199.3 17.8 182 73-271 3-187 (221)
26 TIGR02009 PGMB-YQAB-SF beta-ph 100.0 3.3E-27 7.1E-32 192.5 17.8 179 74-269 1-185 (185)
27 PRK13222 phosphoglycolate phos 100.0 1E-26 2.3E-31 195.5 21.0 187 71-272 3-195 (226)
28 PRK13225 phosphoglycolate phos 99.9 1.5E-26 3.3E-31 199.0 19.3 187 73-280 61-249 (273)
29 PLN02779 haloacid dehalogenase 99.9 4.1E-27 8.8E-32 204.3 15.4 190 74-278 40-254 (286)
30 PRK10748 flavin mononucleotide 99.9 1.9E-26 4.1E-31 195.5 18.6 194 73-272 9-210 (238)
31 PRK14988 GMP/IMP nucleotidase; 99.9 3.2E-26 7E-31 192.1 19.5 102 170-272 93-196 (224)
32 TIGR02247 HAD-1A3-hyp Epoxide 99.9 5.1E-27 1.1E-31 195.5 13.0 202 74-284 2-210 (211)
33 PF13419 HAD_2: Haloacid dehal 99.9 2E-26 4.4E-31 185.3 11.6 174 77-269 1-176 (176)
34 COG1011 Predicted hydrolase (H 99.9 3E-25 6.6E-30 186.9 18.2 196 72-272 2-201 (229)
35 PRK06698 bifunctional 5'-methy 99.9 1.8E-25 4E-30 206.5 18.1 183 71-272 238-429 (459)
36 PRK09456 ?-D-glucose-1-phospha 99.9 1.4E-24 3E-29 179.2 17.8 109 171-280 85-195 (199)
37 PLN02919 haloacid dehalogenase 99.9 1.5E-24 3.2E-29 216.2 20.9 191 73-280 74-271 (1057)
38 TIGR01548 HAD-SF-IA-hyp1 haloa 99.9 3.6E-24 7.8E-29 176.5 18.7 180 75-262 1-197 (197)
39 TIGR01993 Pyr-5-nucltdase pyri 99.9 1.1E-24 2.5E-29 177.5 14.8 173 75-269 1-184 (184)
40 KOG2914 Predicted haloacid-hal 99.9 1.5E-23 3.2E-28 172.6 17.7 184 73-272 9-198 (222)
41 TIGR01509 HAD-SF-IA-v3 haloaci 99.9 1.8E-23 3.9E-28 169.9 17.9 100 169-269 84-183 (183)
42 PLN02811 hydrolase 99.9 2.4E-23 5.1E-28 174.5 17.3 180 81-276 1-190 (220)
43 TIGR01549 HAD-SF-IA-v1 haloaci 99.9 4.9E-23 1.1E-27 163.0 15.6 153 76-263 1-154 (154)
44 PRK11133 serB phosphoserine ph 99.9 3.1E-23 6.7E-28 181.7 14.7 191 53-278 94-297 (322)
45 TIGR00338 serB phosphoserine p 99.9 1.6E-22 3.5E-27 169.3 16.2 180 73-282 13-205 (219)
46 TIGR01493 HAD-SF-IA-v2 Haloaci 99.9 1.8E-23 4E-28 169.0 9.8 171 76-262 1-175 (175)
47 PHA02597 30.2 hypothetical pro 99.9 3.4E-22 7.3E-27 164.7 17.0 167 73-272 1-176 (197)
48 PLN02954 phosphoserine phospha 99.9 4.2E-21 9E-26 161.3 18.6 169 72-268 10-194 (224)
49 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.9 3.3E-21 7.2E-26 159.0 16.2 101 170-271 80-191 (201)
50 TIGR01656 Histidinol-ppas hist 99.9 1.3E-21 2.8E-26 153.6 10.2 100 171-272 28-147 (147)
51 PRK08942 D,D-heptose 1,7-bisph 99.8 1.2E-20 2.7E-25 153.3 13.1 100 171-273 30-150 (181)
52 TIGR01261 hisB_Nterm histidino 99.8 2.1E-20 4.5E-25 148.4 13.5 110 171-283 30-160 (161)
53 TIGR01691 enolase-ppase 2,3-di 99.8 1.3E-19 2.8E-24 150.7 17.2 101 169-272 94-198 (220)
54 TIGR01662 HAD-SF-IIIA HAD-supe 99.8 3.3E-20 7.1E-25 143.0 12.1 95 171-270 26-131 (132)
55 TIGR00213 GmhB_yaeD D,D-heptos 99.8 4.2E-20 9E-25 149.5 13.0 100 171-273 27-154 (176)
56 COG0560 SerB Phosphoserine pho 99.8 6.6E-20 1.4E-24 151.8 14.3 172 72-271 3-187 (212)
57 TIGR01685 MDP-1 magnesium-depe 99.8 2E-20 4.4E-25 149.4 9.2 102 170-272 45-159 (174)
58 PRK09552 mtnX 2-hydroxy-3-keto 99.8 7E-20 1.5E-24 153.4 12.7 168 72-266 1-183 (219)
59 PRK06769 hypothetical protein; 99.8 1.1E-19 2.5E-24 146.3 11.9 102 171-273 29-140 (173)
60 TIGR01664 DNA-3'-Pase DNA 3'-p 99.8 1.6E-19 3.5E-24 144.2 12.3 95 171-268 43-160 (166)
61 PRK13582 thrH phosphoserine ph 99.8 2.3E-19 5E-24 148.6 13.0 98 171-271 69-171 (205)
62 TIGR01672 AphA HAD superfamily 99.8 6.4E-19 1.4E-23 147.7 14.6 94 171-272 115-213 (237)
63 KOG3109 Haloacid dehalogenase- 99.8 2E-18 4.4E-23 138.0 16.1 182 71-272 12-207 (244)
64 cd01427 HAD_like Haloacid deha 99.8 3.2E-18 7E-23 131.6 10.8 99 170-269 24-139 (139)
65 TIGR02137 HSK-PSP phosphoserin 99.8 2.3E-17 4.9E-22 136.0 15.6 171 75-283 2-195 (203)
66 TIGR01452 PGP_euk phosphoglyco 99.8 6E-19 1.3E-23 153.0 5.4 111 171-282 144-259 (279)
67 TIGR03333 salvage_mtnX 2-hydro 99.8 1.7E-17 3.8E-22 138.4 13.5 162 77-264 2-177 (214)
68 TIGR01489 DKMTPPase-SF 2,3-dik 99.8 4.4E-17 9.6E-22 132.9 15.4 92 170-265 72-184 (188)
69 PRK05446 imidazole glycerol-ph 99.7 3.5E-17 7.6E-22 144.4 15.4 110 171-283 31-161 (354)
70 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.7 3.3E-18 7.1E-23 146.4 7.8 107 171-277 121-231 (257)
71 KOG1615 Phosphoserine phosphat 99.7 3.2E-17 6.9E-22 128.7 11.7 160 75-261 17-191 (227)
72 TIGR01668 YqeG_hyp_ppase HAD s 99.7 4.3E-17 9.3E-22 130.9 12.2 98 171-278 44-144 (170)
73 TIGR01488 HAD-SF-IB Haloacid D 99.7 9.8E-17 2.1E-21 129.7 13.1 91 171-262 74-177 (177)
74 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.7 3.1E-16 6.7E-21 129.6 15.5 116 152-268 69-196 (202)
75 TIGR01670 YrbI-phosphatas 3-de 99.7 4.5E-17 9.8E-22 128.7 6.9 89 178-277 36-125 (154)
76 TIGR01681 HAD-SF-IIIC HAD-supe 99.7 3.3E-16 7.2E-21 119.8 9.3 86 171-261 30-126 (128)
77 PF00702 Hydrolase: haloacid d 99.7 2.6E-16 5.5E-21 130.9 8.7 88 170-263 127-215 (215)
78 PHA02530 pseT polynucleotide k 99.7 5.5E-16 1.2E-20 135.9 10.4 101 171-272 188-298 (300)
79 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.6 2.2E-16 4.8E-21 134.6 7.2 108 172-281 123-234 (249)
80 COG0647 NagD Predicted sugar p 99.6 2.2E-15 4.7E-20 127.8 12.3 58 224-281 189-246 (269)
81 TIGR02726 phenyl_P_delta pheny 99.6 3.1E-16 6.6E-21 125.1 6.4 93 178-281 42-135 (169)
82 PRK11009 aphA acid phosphatase 99.6 2.3E-15 5.1E-20 126.1 11.7 95 169-273 113-214 (237)
83 COG2179 Predicted hydrolase of 99.6 1.7E-15 3.8E-20 116.6 9.5 91 172-271 48-139 (175)
84 PLN02645 phosphoglycolate phos 99.6 4.3E-16 9.3E-21 137.0 6.2 106 176-281 176-286 (311)
85 PRK10444 UMP phosphatase; Prov 99.6 1.6E-15 3.4E-20 128.9 7.8 67 215-281 164-230 (248)
86 PRK09484 3-deoxy-D-manno-octul 99.6 3.3E-15 7.1E-20 121.4 7.2 83 178-271 56-139 (183)
87 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.6 3.7E-15 8E-20 126.7 6.5 99 172-271 140-242 (242)
88 TIGR01663 PNK-3'Pase polynucle 99.5 4.2E-14 9.1E-19 130.8 11.4 92 171-265 198-306 (526)
89 PRK11590 hypothetical protein; 99.5 5.1E-13 1.1E-17 111.2 16.4 186 74-271 6-203 (211)
90 TIGR01686 FkbH FkbH-like domai 99.5 5.7E-14 1.2E-18 124.1 9.7 89 171-265 32-125 (320)
91 smart00577 CPDc catalytic doma 99.5 3.7E-14 8.1E-19 111.3 6.7 93 170-267 45-139 (148)
92 PRK08238 hypothetical protein; 99.5 1.9E-12 4E-17 119.4 18.4 104 170-282 72-176 (479)
93 COG0241 HisB Histidinol phosph 99.5 6E-13 1.3E-17 106.0 13.0 99 171-272 32-151 (181)
94 PRK10530 pyridoxal phosphate ( 99.5 8.1E-14 1.8E-18 120.4 8.5 109 172-282 139-253 (272)
95 TIGR01544 HAD-SF-IE haloacid d 99.5 5.5E-13 1.2E-17 113.6 11.3 92 170-262 121-230 (277)
96 PF06888 Put_Phosphatase: Puta 99.4 2.9E-12 6.4E-17 106.9 11.7 178 76-279 2-205 (234)
97 TIGR02244 HAD-IG-Ncltidse HAD 99.4 5.2E-11 1.1E-15 104.7 17.7 103 170-272 184-325 (343)
98 KOG2882 p-Nitrophenyl phosphat 99.4 1.7E-11 3.6E-16 103.5 13.9 59 224-282 223-281 (306)
99 TIGR01460 HAD-SF-IIA Haloacid 99.4 1E-12 2.2E-17 111.2 6.5 89 184-272 142-236 (236)
100 COG4229 Predicted enolase-phos 99.4 4.6E-11 9.9E-16 93.2 14.7 108 162-272 95-206 (229)
101 PTZ00445 p36-lilke protein; Pr 99.4 4.2E-12 9E-17 102.5 9.2 101 171-272 76-207 (219)
102 PRK01158 phosphoglycolate phos 99.3 1.9E-12 4.1E-17 109.1 6.2 91 189-283 118-212 (230)
103 TIGR01545 YfhB_g-proteo haloac 99.3 2.5E-10 5.4E-15 94.7 17.7 114 152-271 75-202 (210)
104 PF12689 Acid_PPase: Acid Phos 99.3 3.8E-12 8.2E-17 100.9 6.1 104 170-280 45-160 (169)
105 PRK10513 sugar phosphate phosp 99.3 3.2E-11 6.9E-16 104.1 10.6 58 224-283 194-251 (270)
106 TIGR01482 SPP-subfamily Sucros 99.3 1.4E-11 3E-16 103.4 7.6 92 190-283 111-204 (225)
107 PF13242 Hydrolase_like: HAD-h 99.2 1.5E-11 3.2E-16 84.9 5.5 58 223-280 2-59 (75)
108 PF08645 PNK3P: Polynucleotide 99.2 3.5E-11 7.5E-16 95.3 7.7 94 171-266 30-152 (159)
109 TIGR01487 SPP-like sucrose-pho 99.2 2E-11 4.3E-16 101.9 6.5 90 191-283 112-202 (215)
110 PRK00192 mannosyl-3-phosphogly 99.2 1.9E-10 4.2E-15 99.5 11.7 53 222-277 187-240 (273)
111 PF12710 HAD: haloacid dehalog 99.1 2.2E-10 4.7E-15 93.6 9.3 86 173-260 92-192 (192)
112 PF09419 PGP_phosphatase: Mito 99.1 4E-10 8.8E-15 89.1 10.0 92 172-273 61-167 (168)
113 TIGR01533 lipo_e_P4 5'-nucleot 99.1 1.4E-09 3.1E-14 92.7 13.7 81 171-259 119-204 (266)
114 COG0561 Cof Predicted hydrolas 99.1 5.9E-10 1.3E-14 95.9 11.1 61 221-283 184-244 (264)
115 TIGR01456 CECR5 HAD-superfamil 99.1 3.2E-09 6.9E-14 93.9 15.5 54 222-275 230-296 (321)
116 COG1778 Low specificity phosph 99.1 6.4E-11 1.4E-15 90.4 4.0 91 179-280 44-135 (170)
117 TIGR01684 viral_ppase viral ph 99.1 4E-10 8.6E-15 96.0 8.3 58 172-229 148-206 (301)
118 PRK15126 thiamin pyrimidine py 99.1 4.3E-10 9.4E-15 97.2 8.1 59 221-281 183-241 (272)
119 TIGR01485 SPP_plant-cyano sucr 99.0 8.1E-09 1.8E-13 88.1 14.3 91 186-279 119-219 (249)
120 KOG3040 Predicted sugar phosph 99.0 4.1E-10 9E-15 89.9 5.7 50 223-272 179-228 (262)
121 KOG3120 Predicted haloacid deh 99.0 1.4E-09 3.1E-14 87.6 8.4 102 170-272 84-211 (256)
122 PRK10976 putative hydrolase; P 99.0 7.5E-10 1.6E-14 95.4 7.1 59 221-281 185-243 (266)
123 TIGR02463 MPGP_rel mannosyl-3- 99.0 1.1E-08 2.4E-13 85.6 12.5 44 223-267 176-219 (221)
124 PLN02887 hydrolase family prot 98.9 3.1E-09 6.7E-14 100.1 9.2 61 221-283 502-562 (580)
125 PF08282 Hydrolase_3: haloacid 98.9 4.5E-09 9.8E-14 89.0 9.2 57 224-282 184-240 (254)
126 TIGR02251 HIF-SF_euk Dullard-l 98.9 7.7E-10 1.7E-14 88.0 3.9 106 171-282 43-150 (162)
127 PHA03398 viral phosphatase sup 98.9 1.7E-08 3.6E-13 86.3 9.8 78 173-250 151-260 (303)
128 COG4359 Uncharacterized conser 98.9 3.9E-08 8.5E-13 77.2 10.8 89 171-264 74-180 (220)
129 TIGR00099 Cof-subfamily Cof su 98.9 2.4E-08 5.2E-13 85.5 10.8 59 222-282 184-242 (256)
130 TIGR02471 sucr_syn_bact_C sucr 98.8 4.5E-08 9.8E-13 82.8 11.8 92 186-281 112-212 (236)
131 PRK03669 mannosyl-3-phosphogly 98.8 3E-08 6.6E-13 85.7 10.8 51 221-273 182-235 (271)
132 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.8 1.1E-08 2.4E-13 86.9 7.9 88 171-264 25-116 (242)
133 TIGR01512 ATPase-IB2_Cd heavy 98.8 1.6E-08 3.4E-13 95.6 9.5 88 170-270 362-451 (536)
134 TIGR01525 ATPase-IB_hvy heavy 98.8 1.3E-08 2.7E-13 96.7 7.9 90 170-272 384-475 (556)
135 PF13344 Hydrolase_6: Haloacid 98.8 1E-07 2.2E-12 69.5 10.0 82 171-264 15-100 (101)
136 TIGR01511 ATPase-IB1_Cu copper 98.7 3.6E-08 7.8E-13 93.6 7.8 89 170-272 405-494 (562)
137 PRK10671 copA copper exporting 98.7 1.1E-07 2.5E-12 94.3 10.5 90 170-272 650-740 (834)
138 COG4996 Predicted phosphatase 98.6 5.4E-08 1.2E-12 72.1 5.6 82 170-259 41-132 (164)
139 TIGR01486 HAD-SF-IIB-MPGP mann 98.6 1.9E-07 4.1E-12 80.0 9.9 57 221-279 171-232 (256)
140 PF06941 NT5C: 5' nucleotidase 98.6 1.7E-07 3.7E-12 76.7 8.0 95 169-283 72-185 (191)
141 TIGR01675 plant-AP plant acid 98.5 2.3E-06 5E-11 71.3 12.1 97 170-273 120-225 (229)
142 PF03767 Acid_phosphat_B: HAD 98.5 1.8E-07 4E-12 78.5 5.1 98 170-272 115-224 (229)
143 TIGR01522 ATPase-IIA2_Ca golgi 98.5 4.2E-07 9.1E-12 90.8 8.4 99 170-270 528-643 (884)
144 TIGR01484 HAD-SF-IIB HAD-super 98.4 3.9E-07 8.4E-12 75.2 6.2 46 221-267 158-203 (204)
145 PTZ00174 phosphomannomutase; P 98.4 3.1E-06 6.6E-11 72.2 11.7 59 221-284 183-245 (247)
146 TIGR02461 osmo_MPG_phos mannos 98.4 1.5E-06 3.4E-11 72.9 8.9 43 224-267 179-223 (225)
147 PRK10187 trehalose-6-phosphate 98.4 7.8E-06 1.7E-10 70.4 13.4 58 225-283 173-240 (266)
148 smart00775 LNS2 LNS2 domain. T 98.4 3.4E-06 7.3E-11 66.7 10.0 92 172-266 29-142 (157)
149 PRK12702 mannosyl-3-phosphogly 98.4 5.4E-06 1.2E-10 71.2 11.6 46 225-272 207-254 (302)
150 PRK14502 bifunctional mannosyl 98.4 3.5E-06 7.7E-11 79.9 11.5 52 223-276 610-663 (694)
151 PF11019 DUF2608: Protein of u 98.4 1.9E-05 4.1E-10 67.3 14.8 96 171-269 82-208 (252)
152 PLN02382 probable sucrose-phos 98.4 1.7E-06 3.6E-11 79.1 8.7 57 222-279 171-230 (413)
153 PF05116 S6PP: Sucrose-6F-phos 98.3 1.2E-05 2.7E-10 68.4 12.4 49 222-272 161-209 (247)
154 TIGR01680 Veg_Stor_Prot vegeta 98.3 1.1E-05 2.4E-10 68.4 11.6 100 170-275 145-254 (275)
155 COG4087 Soluble P-type ATPase 98.3 1.4E-05 3.1E-10 59.5 10.3 92 170-272 30-122 (152)
156 PRK11033 zntA zinc/cadmium/mer 98.2 6E-06 1.3E-10 80.9 9.1 88 170-272 568-656 (741)
157 KOG2630 Enolase-phosphatase E- 98.1 4.8E-05 1E-09 62.2 11.7 97 169-272 122-226 (254)
158 TIGR01497 kdpB K+-transporting 98.1 7.9E-06 1.7E-10 78.5 7.6 99 170-281 446-545 (675)
159 PLN02177 glycerol-3-phosphate 98.1 0.00012 2.7E-09 68.1 14.7 93 171-271 111-215 (497)
160 PLN02423 phosphomannomutase 98.1 3.5E-06 7.6E-11 71.7 3.9 56 221-282 184-243 (245)
161 PRK01122 potassium-transportin 98.0 1.7E-05 3.7E-10 76.4 8.2 100 170-282 445-545 (679)
162 KOG0207 Cation transport ATPas 98.0 7.1E-05 1.5E-09 72.3 11.6 90 170-272 723-813 (951)
163 TIGR01116 ATPase-IIA1_Ca sarco 98.0 1.9E-05 4.1E-10 79.4 8.2 109 170-280 537-666 (917)
164 COG3700 AphA Acid phosphatase 98.0 6.5E-05 1.4E-09 59.0 9.0 87 175-271 119-212 (237)
165 PRK14010 potassium-transportin 98.0 3.1E-05 6.8E-10 74.5 8.7 100 170-282 441-541 (673)
166 COG2503 Predicted secreted aci 97.9 6.3E-05 1.4E-09 62.1 9.0 85 171-263 123-213 (274)
167 PLN02645 phosphoglycolate phos 97.9 9.4E-05 2E-09 65.2 10.3 88 171-268 45-136 (311)
168 PF03031 NIF: NLI interacting 97.9 6.8E-06 1.5E-10 65.1 2.6 91 171-266 37-129 (159)
169 COG2217 ZntA Cation transport 97.9 3.3E-05 7.2E-10 74.6 7.3 91 170-273 537-628 (713)
170 PF05761 5_nucleotid: 5' nucle 97.8 0.00012 2.5E-09 67.3 8.4 101 172-272 185-326 (448)
171 TIGR02250 FCP1_euk FCP1-like p 97.7 9E-05 1.9E-09 58.5 6.3 82 170-260 58-143 (156)
172 PRK10517 magnesium-transportin 97.7 8.1E-05 1.7E-09 74.5 7.4 109 170-282 550-675 (902)
173 TIGR01524 ATPase-IIIB_Mg magne 97.7 0.00011 2.4E-09 73.4 8.3 109 170-282 515-640 (867)
174 TIGR01647 ATPase-IIIA_H plasma 97.7 7.2E-05 1.6E-09 73.7 6.7 107 170-281 442-571 (755)
175 TIGR01517 ATPase-IIB_Ca plasma 97.7 0.00012 2.5E-09 74.0 7.7 108 170-279 579-704 (941)
176 PRK15122 magnesium-transportin 97.6 0.00013 2.8E-09 73.1 7.3 110 170-283 550-676 (903)
177 COG0474 MgtA Cation transport 97.6 0.00015 3.2E-09 72.8 7.5 113 170-283 547-678 (917)
178 PLN02205 alpha,alpha-trehalose 97.6 0.0011 2.4E-08 65.9 13.3 59 224-283 760-841 (854)
179 PRK14501 putative bifunctional 97.6 0.0013 2.8E-08 64.8 13.2 57 224-283 655-720 (726)
180 TIGR01689 EcbF-BcbF capsule bi 97.5 0.00062 1.3E-08 51.5 7.9 46 171-218 25-86 (126)
181 TIGR01523 ATPase-IID_K-Na pota 97.5 0.00034 7.4E-09 71.2 8.0 109 170-280 646-782 (1053)
182 COG2216 KdpB High-affinity K+ 97.5 0.002 4.4E-08 58.9 11.9 102 171-285 448-550 (681)
183 COG5610 Predicted hydrolase (H 97.5 0.0003 6.4E-09 63.2 6.3 98 171-268 98-200 (635)
184 PF08235 LNS2: LNS2 (Lipin/Ned 97.4 0.002 4.3E-08 50.5 9.6 92 172-266 29-142 (157)
185 PF05152 DUF705: Protein of un 97.3 0.0019 4.1E-08 54.9 9.1 79 172-250 144-254 (297)
186 TIGR02245 HAD_IIID1 HAD-superf 97.2 0.0021 4.5E-08 52.5 8.6 89 171-265 46-151 (195)
187 COG5663 Uncharacterized conser 97.1 0.008 1.7E-07 47.0 10.1 87 171-272 73-163 (194)
188 KOG2470 Similar to IMP-GMP spe 97.1 0.0047 1E-07 53.9 9.5 99 173-271 243-376 (510)
189 TIGR00685 T6PP trehalose-phosp 97.1 0.0016 3.5E-08 55.3 6.7 57 226-283 167-239 (244)
190 COG4030 Uncharacterized protei 97.0 0.029 6.4E-07 46.2 12.9 37 171-208 84-121 (315)
191 KOG2134 Polynucleotide kinase 97.0 0.0015 3.2E-08 57.7 5.8 96 169-266 103-229 (422)
192 TIGR01106 ATPase-IIC_X-K sodiu 97.0 0.0022 4.9E-08 65.2 8.0 111 170-282 568-722 (997)
193 TIGR01452 PGP_euk phosphoglyco 96.9 0.0078 1.7E-07 52.2 9.8 85 171-266 19-107 (279)
194 TIGR01494 ATPase_P-type ATPase 96.8 0.0059 1.3E-07 57.5 8.4 81 170-265 347-428 (499)
195 COG3882 FkbH Predicted enzyme 96.8 0.016 3.4E-07 52.9 10.3 86 172-263 257-347 (574)
196 KOG0202 Ca2+ transporting ATPa 96.7 0.0067 1.4E-07 58.7 7.8 112 170-283 584-717 (972)
197 KOG1618 Predicted phosphatase 96.7 0.043 9.3E-07 47.5 11.9 54 222-275 268-345 (389)
198 COG3769 Predicted hydrolase (H 96.6 0.044 9.5E-07 45.0 10.9 92 173-271 137-236 (274)
199 TIGR01657 P-ATPase-V P-type AT 96.3 0.022 4.7E-07 58.6 9.7 40 170-209 656-696 (1054)
200 TIGR01652 ATPase-Plipid phosph 96.1 0.018 3.9E-07 59.2 8.0 39 170-208 631-670 (1057)
201 PRK10444 UMP phosphatase; Prov 96.1 0.065 1.4E-06 45.7 9.9 48 171-218 18-69 (248)
202 PLN02499 glycerol-3-phosphate 95.9 0.11 2.5E-06 48.1 11.0 87 178-271 101-198 (498)
203 TIGR01457 HAD-SF-IIA-hyp2 HAD- 95.6 0.23 5E-06 42.3 11.6 49 171-219 18-70 (249)
204 KOG2961 Predicted hydrolase (H 95.6 0.13 2.8E-06 39.8 8.6 36 240-275 137-172 (190)
205 PLN03190 aminophospholipid tra 95.3 0.11 2.4E-06 53.9 9.8 39 170-208 726-765 (1178)
206 TIGR01658 EYA-cons_domain eyes 95.2 0.13 2.9E-06 43.0 8.0 61 207-272 197-259 (274)
207 PF06189 5-nucleotidase: 5'-nu 95.0 0.25 5.4E-06 41.8 9.3 73 187-275 187-263 (264)
208 COG4850 Uncharacterized conser 94.9 0.2 4.3E-06 43.6 8.6 84 169-258 195-293 (373)
209 TIGR01460 HAD-SF-IIA Haloacid 94.1 0.41 9E-06 40.3 8.9 83 171-265 15-102 (236)
210 TIGR01458 HAD-SF-IIA-hyp3 HAD- 94.0 0.11 2.4E-06 44.5 5.3 48 171-218 22-73 (257)
211 PLN03017 trehalose-phosphatase 93.5 0.13 2.8E-06 46.1 5.0 56 227-283 284-355 (366)
212 PF05822 UMPH-1: Pyrimidine 5' 93.3 0.074 1.6E-06 44.9 2.9 91 170-262 90-198 (246)
213 PLN02580 trehalose-phosphatase 93.1 0.15 3.2E-06 46.2 4.8 55 227-283 302-373 (384)
214 PLN02151 trehalose-phosphatase 93.0 0.16 3.4E-06 45.4 4.7 55 228-283 271-341 (354)
215 KOG0209 P-type ATPase [Inorgan 92.9 0.33 7.3E-06 47.4 6.9 104 170-274 675-837 (1160)
216 KOG2882 p-Nitrophenyl phosphat 92.5 1.5 3.2E-05 38.0 9.7 88 171-268 39-130 (306)
217 KOG3128 Uncharacterized conser 92.5 0.22 4.7E-06 41.9 4.5 121 152-278 125-265 (298)
218 COG4502 5'(3')-deoxyribonucleo 92.4 0.18 4E-06 38.4 3.6 92 171-283 69-174 (180)
219 KOG0204 Calcium transporting A 92.1 0.39 8.6E-06 47.1 6.3 108 170-281 647-776 (1034)
220 KOG3040 Predicted sugar phosph 91.5 1 2.2E-05 37.0 7.1 80 172-262 25-108 (262)
221 KOG0206 P-type ATPase [General 91.5 2.4 5.1E-05 43.7 11.3 36 170-205 651-687 (1151)
222 KOG2469 IMP-GMP specific 5'-nu 90.6 1.2 2.6E-05 40.1 7.4 99 174-272 202-335 (424)
223 COG1877 OtsB Trehalose-6-phosp 90.6 0.41 8.8E-06 41.1 4.4 45 227-272 183-230 (266)
224 KOG4549 Magnesium-dependent ph 90.3 1.5 3.2E-05 32.9 6.5 76 171-251 45-131 (144)
225 PRK00192 mannosyl-3-phosphogly 89.4 0.61 1.3E-05 40.2 4.7 41 172-212 23-64 (273)
226 KOG3107 Predicted haloacid deh 88.7 1.4 3E-05 39.3 6.3 89 189-284 373-464 (468)
227 PLN02580 trehalose-phosphatase 87.8 1.8 3.9E-05 39.2 6.7 44 199-250 306-352 (384)
228 TIGR02461 osmo_MPG_phos mannos 87.6 0.96 2.1E-05 37.8 4.6 39 173-211 18-57 (225)
229 KOG2116 Protein involved in pl 87.5 1.1 2.4E-05 42.7 5.3 98 173-271 561-680 (738)
230 KOG0210 P-type ATPase [Inorgan 87.4 1.3 2.8E-05 42.7 5.6 26 171-196 659-684 (1051)
231 TIGR01487 SPP-like sucrose-pho 86.3 1.3 2.8E-05 36.5 4.7 40 172-211 20-60 (215)
232 cd04728 ThiG Thiazole synthase 85.9 14 0.00031 31.2 10.4 103 171-281 105-218 (248)
233 COG5083 SMP2 Uncharacterized p 85.6 1.6 3.4E-05 39.8 4.9 93 173-266 406-517 (580)
234 TIGR02463 MPGP_rel mannosyl-3- 85.0 1.3 2.9E-05 36.6 4.2 36 174-209 20-56 (221)
235 PRK01158 phosphoglycolate phos 85.0 1.6 3.4E-05 36.3 4.6 39 173-211 23-62 (230)
236 PF05690 ThiG: Thiazole biosyn 84.9 11 0.00024 31.6 9.3 95 171-272 105-206 (247)
237 CHL00162 thiG thiamin biosynth 84.5 24 0.00053 30.0 11.2 106 171-281 119-232 (267)
238 PRK11840 bifunctional sulfur c 84.5 10 0.00022 33.5 9.3 97 170-273 178-281 (326)
239 KOG1605 TFIIF-interacting CTD 84.4 0.12 2.5E-06 44.2 -2.5 91 171-266 132-224 (262)
240 TIGR00099 Cof-subfamily Cof su 84.1 1.9 4.1E-05 36.6 4.8 38 173-210 19-57 (256)
241 PRK00208 thiG thiazole synthas 84.0 19 0.00041 30.5 10.4 104 171-282 105-219 (250)
242 PRK13125 trpA tryptophan synth 83.8 13 0.00028 31.5 9.7 93 173-272 116-216 (244)
243 PLN03064 alpha,alpha-trehalose 83.8 2 4.2E-05 43.6 5.3 37 171-207 623-661 (934)
244 PRK15126 thiamin pyrimidine py 83.8 1.8 3.8E-05 37.2 4.5 40 172-211 21-61 (272)
245 TIGR00685 T6PP trehalose-phosp 83.1 1.1 2.3E-05 38.0 2.8 14 75-88 4-17 (244)
246 TIGR01456 CECR5 HAD-superfamil 83.0 3.5 7.5E-05 36.5 6.1 84 171-268 17-109 (321)
247 PRK10530 pyridoxal phosphate ( 82.9 2.3 4.9E-05 36.3 4.9 39 172-210 22-61 (272)
248 TIGR01482 SPP-subfamily Sucros 82.6 2.2 4.8E-05 35.2 4.6 40 172-211 17-57 (225)
249 PLN03063 alpha,alpha-trehalose 82.5 2 4.4E-05 43.0 4.9 34 172-205 534-569 (797)
250 PRK10976 putative hydrolase; P 82.4 2.3 5E-05 36.2 4.7 39 173-211 22-61 (266)
251 TIGR01486 HAD-SF-IIB-MPGP mann 82.3 2.3 4.9E-05 36.2 4.6 39 173-211 19-58 (256)
252 PF06437 ISN1: IMP-specific 5' 81.8 1.8 4E-05 38.7 3.8 43 228-272 351-401 (408)
253 COG0561 Cof Predicted hydrolas 81.1 2.7 5.9E-05 35.8 4.6 40 172-211 22-62 (264)
254 COG2241 CobL Precorrin-6B meth 80.1 33 0.00071 28.4 11.3 87 186-283 68-160 (210)
255 PF14336 DUF4392: Domain of un 78.2 6.9 0.00015 34.2 6.2 88 173-261 63-193 (291)
256 KOG3189 Phosphomannomutase [Li 77.3 2.3 5E-05 34.6 2.7 29 75-103 12-40 (252)
257 PRK03669 mannosyl-3-phosphogly 77.0 3.9 8.4E-05 35.1 4.4 37 173-209 27-64 (271)
258 smart00577 CPDc catalytic doma 75.1 1.9 4.2E-05 33.4 1.8 16 75-90 3-18 (148)
259 COG0731 Fe-S oxidoreductases [ 75.0 8.8 0.00019 33.5 5.9 66 169-239 91-165 (296)
260 PRK08883 ribulose-phosphate 3- 74.4 47 0.001 27.6 10.0 95 173-272 93-197 (220)
261 COG2022 ThiG Uncharacterized e 74.2 36 0.00077 28.6 8.8 97 171-272 112-213 (262)
262 PF09949 DUF2183: Uncharacteri 74.2 13 0.00028 26.8 5.7 32 226-259 50-81 (100)
263 TIGR00262 trpA tryptophan synt 74.1 37 0.00081 29.0 9.6 96 171-272 125-229 (256)
264 PF02571 CbiJ: Precorrin-6x re 73.4 57 0.0012 27.8 11.7 109 172-283 115-247 (249)
265 PLN02334 ribulose-phosphate 3- 73.4 53 0.0011 27.4 12.3 99 173-272 102-204 (229)
266 PRK14024 phosphoribosyl isomer 72.4 35 0.00077 28.7 9.0 79 200-282 152-238 (241)
267 TIGR02251 HIF-SF_euk Dullard-l 71.9 2.6 5.6E-05 33.3 1.8 16 75-90 2-17 (162)
268 PF06506 PrpR_N: Propionate ca 71.2 9.8 0.00021 30.4 5.1 88 174-277 65-157 (176)
269 cd06831 PLPDE_III_ODC_like_AZI 70.5 35 0.00075 31.2 9.0 75 190-282 42-117 (394)
270 TIGR02468 sucrsPsyn_pln sucros 69.3 26 0.00056 36.2 8.5 63 199-265 926-995 (1050)
271 COG2099 CobK Precorrin-6x redu 69.1 37 0.0008 28.9 8.1 97 172-272 114-231 (257)
272 PLN02591 tryptophan synthase 69.1 63 0.0014 27.5 9.7 96 171-272 116-220 (250)
273 TIGR03365 Bsubt_queE 7-cyano-7 68.2 30 0.00066 29.1 7.7 29 171-199 85-113 (238)
274 KOG0323 TFIIF-interacting CTD 66.8 15 0.00032 35.6 5.9 86 169-262 200-288 (635)
275 TIGR02250 FCP1_euk FCP1-like p 65.9 4.2 9.1E-05 31.9 1.9 17 75-91 7-23 (156)
276 TIGR01484 HAD-SF-IIB HAD-super 65.3 11 0.00024 30.5 4.4 35 172-206 19-54 (204)
277 PF02358 Trehalose_PPase: Treh 65.0 6 0.00013 33.1 2.8 47 225-272 164-218 (235)
278 TIGR02329 propionate_PrpR prop 64.4 35 0.00075 32.6 8.0 87 173-272 84-172 (526)
279 PRK13762 tRNA-modifying enzyme 64.4 14 0.0003 32.8 5.0 29 169-197 141-169 (322)
280 KOG0208 Cation transport ATPas 64.1 29 0.00063 35.3 7.4 112 88-209 631-745 (1140)
281 PRK10076 pyruvate formate lyas 63.9 37 0.0008 28.1 7.2 28 171-198 51-79 (213)
282 PRK10128 2-keto-3-deoxy-L-rham 63.3 99 0.0021 26.7 10.5 99 178-283 9-109 (267)
283 PRK08005 epimerase; Validated 63.1 87 0.0019 25.9 11.5 99 173-272 93-193 (210)
284 PF03808 Glyco_tran_WecB: Glyc 61.6 36 0.00079 27.0 6.6 15 223-237 109-123 (172)
285 cd04723 HisA_HisF Phosphoribos 60.8 99 0.0022 25.9 10.3 48 222-272 172-220 (233)
286 cd00733 GlyRS_alpha_core Class 60.0 11 0.00024 31.8 3.4 45 224-268 80-130 (279)
287 TIGR01485 SPP_plant-cyano sucr 59.6 17 0.00036 30.7 4.6 38 173-210 24-62 (249)
288 cd01766 Ufm1 Urm1-like ubiquit 59.5 17 0.00037 24.4 3.5 44 222-266 23-66 (82)
289 PRK04302 triosephosphate isome 59.3 60 0.0013 26.9 7.8 97 171-272 99-204 (223)
290 PF04358 DsrC: DsrC like prote 58.7 67 0.0015 23.5 6.9 37 75-111 7-43 (109)
291 PRK09348 glyQ glycyl-tRNA synt 58.0 9.8 0.00021 32.2 2.7 45 224-268 84-134 (283)
292 PF05728 UPF0227: Uncharacteri 57.7 48 0.001 26.8 6.7 45 241-286 57-104 (187)
293 PRK15424 propionate catabolism 57.4 47 0.001 31.8 7.5 87 173-272 94-182 (538)
294 TIGR00388 glyQ glycyl-tRNA syn 57.1 14 0.0003 31.5 3.4 45 224-268 81-131 (293)
295 TIGR03239 GarL 2-dehydro-3-deo 56.9 1.2E+02 0.0027 25.7 10.4 97 178-283 3-103 (249)
296 KOG1618 Predicted phosphatase 56.4 68 0.0015 28.4 7.6 84 171-268 52-144 (389)
297 PF04763 DUF562: Protein of un 56.4 88 0.0019 23.9 8.4 93 173-277 35-132 (146)
298 PRK08057 cobalt-precorrin-6x r 56.3 1.2E+02 0.0026 25.8 9.2 107 172-283 114-243 (248)
299 PRK14502 bifunctional mannosyl 56.3 18 0.00038 35.5 4.5 39 173-211 436-475 (694)
300 TIGR01858 tag_bisphos_ald clas 56.1 1.4E+02 0.003 26.0 9.8 104 175-282 4-114 (282)
301 TIGR03151 enACPred_II putative 55.0 93 0.002 27.4 8.6 89 176-272 99-192 (307)
302 COG0752 GlyQ Glycyl-tRNA synth 54.6 12 0.00025 31.6 2.6 54 224-277 85-144 (298)
303 PLN02887 hydrolase family prot 54.5 19 0.00041 34.8 4.4 39 171-209 326-365 (580)
304 PRK10558 alpha-dehydro-beta-de 53.7 1.4E+02 0.0031 25.5 10.3 97 178-283 10-110 (256)
305 COG1834 N-Dimethylarginine dim 53.6 61 0.0013 27.9 6.8 87 175-261 40-146 (267)
306 PF03332 PMM: Eukaryotic phosp 52.9 16 0.00035 30.3 3.2 42 242-283 175-219 (220)
307 PRK12737 gatY tagatose-bisphos 51.6 1.6E+02 0.0036 25.6 9.9 104 174-281 5-115 (284)
308 PF04413 Glycos_transf_N: 3-De 51.5 8.7 0.00019 31.1 1.5 69 177-257 109-185 (186)
309 cd06533 Glyco_transf_WecG_TagA 51.1 53 0.0011 26.1 5.9 15 223-237 107-121 (171)
310 KOG2832 TFIIF-interacting CTD 51.0 61 0.0013 29.1 6.6 77 171-251 215-292 (393)
311 PTZ00174 phosphomannomutase; P 50.9 23 0.00049 29.9 4.0 33 172-204 24-57 (247)
312 PRK10481 hypothetical protein; 50.7 45 0.00097 27.9 5.5 114 173-286 77-208 (224)
313 PLN03017 trehalose-phosphatase 50.6 63 0.0014 29.2 6.8 45 199-250 288-334 (366)
314 PRK14021 bifunctional shikimat 48.6 1.4E+02 0.0031 28.6 9.3 95 173-271 195-303 (542)
315 PRK00208 thiG thiazole synthas 48.3 1.2E+02 0.0025 25.9 7.6 89 176-269 52-150 (250)
316 TIGR02495 NrdG2 anaerobic ribo 47.5 42 0.00091 26.8 4.9 28 171-198 75-102 (191)
317 PLN02951 Molybderin biosynthes 47.0 1.1E+02 0.0024 27.7 8.0 40 170-209 118-161 (373)
318 cd04729 NanE N-acetylmannosami 46.5 1.6E+02 0.0036 24.1 10.4 99 174-280 110-216 (219)
319 PLN02151 trehalose-phosphatase 46.4 62 0.0013 29.2 6.1 34 199-236 274-309 (354)
320 PF06014 DUF910: Bacterial pro 45.7 16 0.00036 23.7 1.7 25 231-260 7-31 (62)
321 COG0378 HypB Ni2+-binding GTPa 45.5 1.5E+02 0.0032 24.4 7.5 71 175-251 30-105 (202)
322 PRK11508 sulfur transfer prote 45.3 1.2E+02 0.0026 22.2 7.6 37 75-111 7-43 (109)
323 TIGR00236 wecB UDP-N-acetylglu 45.2 1.2E+02 0.0026 27.0 7.9 97 175-272 16-119 (365)
324 CHL00200 trpA tryptophan synth 45.2 2E+02 0.0043 24.7 9.8 96 171-272 129-233 (263)
325 TIGR03572 WbuZ glycosyl amidat 44.6 1.8E+02 0.0039 24.1 9.0 46 224-272 182-229 (232)
326 PRK08649 inosine 5-monophospha 44.2 2.5E+02 0.0054 25.5 10.8 91 173-272 117-217 (368)
327 KOG0203 Na+/K+ ATPase, alpha s 44.0 12 0.00026 37.2 1.3 110 170-282 590-744 (1019)
328 TIGR03470 HpnH hopanoid biosyn 43.7 27 0.00058 30.9 3.4 29 169-197 83-111 (318)
329 PRK13587 1-(5-phosphoribosyl)- 43.5 2E+02 0.0043 24.2 11.4 47 222-272 175-223 (234)
330 TIGR00715 precor6x_red precorr 43.3 2.1E+02 0.0046 24.4 10.4 49 232-283 190-251 (256)
331 KOG0023 Alcohol dehydrogenase, 43.1 2.5E+02 0.0053 25.2 9.5 38 178-215 197-234 (360)
332 PRK00286 xseA exodeoxyribonucl 43.1 1.5E+02 0.0033 27.4 8.4 63 187-249 136-199 (438)
333 PRK03692 putative UDP-N-acetyl 42.9 85 0.0018 26.6 6.2 22 177-198 96-117 (243)
334 cd05008 SIS_GlmS_GlmD_1 SIS (S 42.6 42 0.00091 24.6 3.9 27 172-198 59-85 (126)
335 PF02593 dTMP_synthase: Thymid 42.6 66 0.0014 26.8 5.3 91 171-266 60-157 (217)
336 TIGR02109 PQQ_syn_pqqE coenzym 41.9 56 0.0012 29.2 5.3 39 170-208 65-106 (358)
337 PRK00278 trpC indole-3-glycero 41.7 2.2E+02 0.0048 24.3 10.5 93 173-272 147-242 (260)
338 TIGR02471 sucr_syn_bact_C sucr 41.7 46 0.00099 27.7 4.4 32 177-209 22-54 (236)
339 COG0019 LysA Diaminopimelate d 41.5 1.3E+02 0.0028 27.6 7.5 72 186-271 52-126 (394)
340 cd06537 CIDE_N_B CIDE_N domain 41.2 16 0.00034 25.2 1.2 15 75-89 40-54 (81)
341 cd05014 SIS_Kpsf KpsF-like pro 41.1 37 0.00081 25.0 3.5 27 172-198 60-86 (128)
342 cd06539 CIDE_N_A CIDE_N domain 41.0 16 0.00034 25.0 1.2 16 74-89 40-55 (78)
343 TIGR00696 wecB_tagA_cpsF bacte 40.9 1.3E+02 0.0027 24.2 6.6 20 177-196 39-58 (177)
344 PRK13717 conjugal transfer pro 40.9 24 0.00052 26.5 2.2 13 73-85 44-56 (128)
345 KOG0780 Signal recognition par 40.3 1.7E+02 0.0036 27.0 7.7 47 212-260 184-231 (483)
346 PF02254 TrkA_N: TrkA-N domain 40.0 1.4E+02 0.003 21.4 6.5 63 200-268 52-114 (116)
347 TIGR03342 dsrC_tusE_dsvC sulfu 39.5 1.5E+02 0.0033 21.7 7.5 37 75-111 6-42 (108)
348 PRK13307 bifunctional formalde 39.5 3E+02 0.0066 25.2 9.5 94 174-272 264-360 (391)
349 COG2022 ThiG Uncharacterized e 39.0 2.2E+02 0.0047 24.1 7.6 96 172-269 55-157 (262)
350 TIGR02826 RNR_activ_nrdG3 anae 38.9 49 0.0011 25.6 3.8 33 173-205 75-109 (147)
351 PF02358 Trehalose_PPase: Treh 38.7 37 0.0008 28.3 3.4 13 78-90 1-13 (235)
352 TIGR00007 phosphoribosylformim 38.7 2.2E+02 0.0048 23.4 12.5 46 224-272 174-220 (230)
353 PF08484 Methyltransf_14: C-me 38.7 1.5E+02 0.0033 23.2 6.7 49 173-222 55-104 (160)
354 smart00266 CAD Domains present 38.7 18 0.00038 24.5 1.1 16 74-89 38-53 (74)
355 PRK05301 pyrroloquinoline quin 38.4 62 0.0013 29.2 5.0 39 170-208 74-115 (378)
356 cd00331 IGPS Indole-3-glycerol 38.2 2.2E+02 0.0048 23.2 10.1 94 173-272 108-203 (217)
357 cd04728 ThiG Thiazole synthase 38.2 1.5E+02 0.0033 25.2 6.8 92 173-269 49-150 (248)
358 PF03671 Ufm1: Ubiquitin fold 38.1 12 0.00026 25.0 0.2 40 223-263 24-63 (76)
359 PF09269 DUF1967: Domain of un 37.7 34 0.00073 22.7 2.4 20 231-250 45-64 (69)
360 TIGR00661 MJ1255 conserved hyp 37.7 2.3E+02 0.0051 24.7 8.5 92 175-271 17-121 (321)
361 cd04724 Tryptophan_synthase_al 37.7 2.5E+02 0.0054 23.6 9.3 92 172-272 115-217 (242)
362 TIGR00237 xseA exodeoxyribonuc 37.5 2.2E+02 0.0047 26.5 8.4 63 187-249 130-194 (432)
363 cd05710 SIS_1 A subgroup of th 37.3 61 0.0013 23.8 4.0 27 172-198 60-86 (120)
364 PRK08610 fructose-bisphosphate 36.8 2.9E+02 0.0062 24.1 10.2 107 174-282 5-119 (286)
365 KOG3483 Uncharacterized conser 36.7 48 0.001 22.3 2.9 44 221-265 33-76 (94)
366 TIGR00167 cbbA ketose-bisphosp 36.2 2.9E+02 0.0064 24.1 10.3 108 173-282 4-119 (288)
367 PRK13585 1-(5-phosphoribosyl)- 35.8 2.6E+02 0.0056 23.3 8.6 79 200-282 155-238 (241)
368 PF05690 ThiG: Thiazole biosyn 35.6 41 0.0009 28.3 3.1 94 174-269 50-150 (247)
369 TIGR03595 Obg_CgtA_exten Obg f 34.9 51 0.0011 21.9 2.9 20 231-250 45-64 (69)
370 COG2044 Predicted peroxiredoxi 34.8 61 0.0013 24.2 3.5 26 171-196 60-85 (120)
371 COG1922 WecG Teichoic acid bio 34.8 1.4E+02 0.003 25.6 6.1 16 245-260 188-203 (253)
372 PF04123 DUF373: Domain of unk 34.7 1.8E+02 0.004 26.1 7.2 59 175-258 53-114 (344)
373 PF13604 AAA_30: AAA domain; P 33.7 2E+02 0.0044 23.2 6.9 75 175-251 35-130 (196)
374 cd01615 CIDE_N CIDE_N domain, 33.4 24 0.00052 24.2 1.1 15 75-89 41-55 (78)
375 PF06925 MGDG_synth: Monogalac 32.7 2.4E+02 0.0052 22.0 7.8 24 225-249 143-166 (169)
376 PRK08091 ribulose-phosphate 3- 32.4 3E+02 0.0066 23.1 10.4 107 173-282 103-222 (228)
377 PLN02460 indole-3-glycerol-pho 32.4 3.7E+02 0.0081 24.1 11.5 108 174-286 218-337 (338)
378 TIGR01615 A_thal_3542 uncharac 32.2 95 0.0021 23.6 4.2 72 177-258 3-90 (131)
379 TIGR03127 RuMP_HxlB 6-phospho 32.1 74 0.0016 25.2 4.0 27 172-198 85-111 (179)
380 PRK13790 phosphoribosylamine-- 32.1 3.7E+02 0.0081 24.3 9.0 105 174-283 15-131 (379)
381 TIGR00343 pyridoxal 5'-phospha 32.0 1.4E+02 0.003 26.0 5.7 54 225-281 183-242 (287)
382 cd02071 MM_CoA_mut_B12_BD meth 31.8 85 0.0018 23.2 4.0 19 176-194 40-58 (122)
383 cd06536 CIDE_N_ICAD CIDE_N dom 31.7 26 0.00055 24.1 1.0 15 75-89 43-57 (80)
384 COG3655 Predicted transcriptio 31.6 59 0.0013 21.9 2.8 25 227-251 44-68 (73)
385 cd06836 PLPDE_III_ODC_DapDC_li 31.6 2.3E+02 0.0051 25.6 7.6 74 190-282 33-107 (379)
386 PRK00748 1-(5-phosphoribosyl)- 31.5 2.5E+02 0.0053 23.2 7.3 46 224-272 175-222 (233)
387 TIGR00735 hisF imidazoleglycer 31.5 3.2E+02 0.0069 23.1 10.4 57 223-283 183-246 (254)
388 PF02350 Epimerase_2: UDP-N-ac 31.4 88 0.0019 28.0 4.8 89 182-272 3-100 (346)
389 cd00381 IMPDH IMPDH: The catal 31.3 3.7E+02 0.0081 23.8 9.3 92 173-272 120-228 (325)
390 cd04732 HisA HisA. Phosphorib 30.6 2.5E+02 0.0055 23.1 7.2 46 224-272 175-221 (234)
391 cd02071 MM_CoA_mut_B12_BD meth 30.4 2.2E+02 0.0048 20.9 10.6 99 178-283 19-120 (122)
392 PF13911 AhpC-TSA_2: AhpC/TSA 30.3 1.4E+02 0.003 21.5 5.0 33 177-209 4-37 (115)
393 COG2897 SseA Rhodanese-related 30.2 71 0.0015 27.8 3.8 49 222-271 69-123 (285)
394 cd06538 CIDE_N_FSP27 CIDE_N do 30.0 28 0.00062 23.8 1.0 15 75-89 40-54 (79)
395 PRK04940 hypothetical protein; 29.9 2.3E+02 0.0049 22.9 6.4 43 243-286 60-105 (180)
396 TIGR01101 V_ATP_synt_F vacuola 29.8 1.5E+02 0.0033 22.0 4.9 63 173-237 46-111 (115)
397 COG3769 Predicted hydrolase (H 29.7 69 0.0015 26.8 3.4 35 175-209 28-63 (274)
398 PRK10415 tRNA-dihydrouridine s 29.3 4E+02 0.0087 23.5 9.7 46 224-272 179-226 (321)
399 TIGR02493 PFLA pyruvate format 29.2 75 0.0016 26.3 3.8 26 171-196 78-104 (235)
400 cd05212 NAD_bind_m-THF_DH_Cycl 29.1 2.6E+02 0.0057 21.4 6.6 55 228-282 12-71 (140)
401 TIGR01048 lysA diaminopimelate 29.1 3.9E+02 0.0085 24.3 8.8 34 235-269 87-122 (417)
402 PRK14114 1-(5-phosphoribosyl)- 29.1 3.5E+02 0.0077 22.8 13.2 57 223-282 172-239 (241)
403 PRK09479 glpX fructose 1,6-bis 29.0 4.1E+02 0.0089 23.5 9.2 82 173-264 167-250 (319)
404 PRK04180 pyridoxal biosynthesi 29.0 2.3E+02 0.0049 24.8 6.5 55 224-281 188-248 (293)
405 PF04007 DUF354: Protein of un 29.0 4.2E+02 0.0091 23.7 8.7 88 175-272 16-112 (335)
406 cd04727 pdxS PdxS is a subunit 28.9 2.2E+02 0.0048 24.8 6.4 46 225-273 180-228 (283)
407 smart00540 LEM in nuclear memb 28.9 36 0.00078 20.5 1.2 30 176-205 9-39 (44)
408 PF05761 5_nucleotid: 5' nucle 28.9 52 0.0011 30.7 2.9 18 73-90 11-28 (448)
409 cd07043 STAS_anti-anti-sigma_f 28.7 1E+02 0.0022 21.0 3.9 37 176-213 60-96 (99)
410 PF04131 NanE: Putative N-acet 28.7 2.8E+02 0.0061 22.6 6.7 104 173-283 79-186 (192)
411 cd04795 SIS SIS domain. SIS (S 28.6 69 0.0015 21.4 2.9 22 172-193 60-81 (87)
412 cd05006 SIS_GmhA Phosphoheptos 28.5 75 0.0016 25.1 3.5 27 172-198 114-140 (177)
413 PRK12738 kbaY tagatose-bisphos 28.4 4E+02 0.0087 23.2 9.7 105 174-282 5-116 (286)
414 cd00885 cinA Competence-damage 28.3 1.9E+02 0.0041 22.9 5.7 59 227-286 20-87 (170)
415 cd06589 GH31 The enzymes of gl 28.3 70 0.0015 27.3 3.5 26 171-196 64-89 (265)
416 PF01380 SIS: SIS domain SIS d 28.1 1.1E+02 0.0023 22.4 4.1 26 173-198 67-92 (131)
417 COG0034 PurF Glutamine phospho 27.7 1.2E+02 0.0026 28.2 4.9 47 240-286 346-421 (470)
418 COG5190 FCP1 TFIIF-interacting 27.7 1.5E+02 0.0033 27.1 5.5 81 171-255 253-334 (390)
419 TIGR03278 methan_mark_10 putat 27.3 88 0.0019 28.8 4.0 39 171-209 87-130 (404)
420 COG0191 Fba Fructose/tagatose 27.1 4.2E+02 0.0092 23.1 9.8 104 173-280 4-115 (286)
421 TIGR01859 fruc_bis_ald_ fructo 27.1 4.2E+02 0.009 23.0 10.2 104 175-282 4-116 (282)
422 COG0626 MetC Cystathionine bet 26.8 4.7E+02 0.01 24.1 8.5 90 175-273 68-159 (396)
423 TIGR00067 glut_race glutamate 26.8 1.9E+02 0.0042 24.5 5.9 16 256-271 53-69 (251)
424 TIGR02311 HpaI 2,4-dihydroxyhe 26.5 4E+02 0.0086 22.6 11.7 97 178-283 3-103 (249)
425 PRK07084 fructose-bisphosphate 26.4 4.6E+02 0.01 23.3 9.7 107 173-281 10-126 (321)
426 COG0352 ThiE Thiamine monophos 26.3 2.1E+02 0.0045 23.7 5.7 45 231-283 57-101 (211)
427 PF14213 DUF4325: Domain of un 26.3 91 0.002 20.8 3.1 30 75-104 18-47 (74)
428 TIGR02370 pyl_corrinoid methyl 25.7 3.6E+02 0.0078 21.8 8.4 84 180-268 106-191 (197)
429 cd05005 SIS_PHI Hexulose-6-pho 25.7 1.1E+02 0.0023 24.2 4.0 27 172-198 88-114 (179)
430 PRK08745 ribulose-phosphate 3- 25.7 3.9E+02 0.0086 22.2 11.8 97 173-272 97-201 (223)
431 PF02602 HEM4: Uroporphyrinoge 25.5 1.9E+02 0.0042 23.6 5.6 21 176-196 32-52 (231)
432 cd06595 GH31_xylosidase_XylS-l 25.5 85 0.0018 27.3 3.5 24 171-194 72-95 (292)
433 cd04740 DHOD_1B_like Dihydroor 25.5 4.4E+02 0.0095 22.7 9.1 38 232-272 224-262 (296)
434 PF00072 Response_reg: Respons 25.4 2.3E+02 0.005 19.5 10.9 100 174-283 9-111 (112)
435 COG0541 Ffh Signal recognition 25.4 4.7E+02 0.01 24.4 8.2 34 227-261 197-231 (451)
436 cd05013 SIS_RpiR RpiR-like pro 25.4 90 0.0019 22.9 3.3 26 173-198 74-99 (139)
437 COG0106 HisA Phosphoribosylfor 25.4 3.4E+02 0.0074 23.0 6.8 60 220-282 172-237 (241)
438 PRK05787 cobalt-precorrin-6Y C 25.1 3.7E+02 0.0079 21.7 11.4 91 184-283 65-162 (210)
439 PRK12857 fructose-1,6-bisphosp 25.1 4.6E+02 0.01 22.8 10.1 105 174-282 5-116 (284)
440 TIGR03140 AhpF alkyl hydropero 25.1 3.7E+02 0.008 25.5 8.0 98 171-270 131-242 (515)
441 PRK00865 glutamate racemase; P 25.0 2.2E+02 0.0048 24.2 6.0 65 187-254 6-79 (261)
442 PF07279 DUF1442: Protein of u 25.0 4.1E+02 0.0088 22.2 12.1 103 172-284 26-137 (218)
443 cd00153 RalGDS_RA Ubiquitin do 24.7 96 0.0021 21.6 2.8 26 186-211 17-45 (87)
444 KOG2018 Predicted dinucleotide 24.7 2.6E+02 0.0057 24.9 6.1 44 176-219 180-245 (430)
445 KOG0622 Ornithine decarboxylas 24.6 2.9E+02 0.0063 25.5 6.6 74 191-282 86-160 (448)
446 PF02784 Orn_Arg_deC_N: Pyrido 24.5 1.3E+02 0.0029 25.2 4.5 30 238-268 60-91 (251)
447 cd05017 SIS_PGI_PMI_1 The memb 24.4 99 0.0021 22.6 3.3 34 172-206 56-89 (119)
448 PRK11840 bifunctional sulfur c 24.3 5.1E+02 0.011 23.1 10.9 131 134-269 78-224 (326)
449 PRK05752 uroporphyrinogen-III 24.2 3.7E+02 0.008 22.6 7.2 20 173-192 13-32 (255)
450 cd08198 DHQS-like2 Dehydroquin 24.1 5.4E+02 0.012 23.3 8.7 87 186-272 30-134 (369)
451 PRK13937 phosphoheptose isomer 24.0 1.2E+02 0.0026 24.4 3.9 27 172-198 119-145 (188)
452 PRK15108 biotin synthase; Prov 24.0 2.7E+02 0.0057 25.0 6.5 38 173-211 111-150 (345)
453 KOG2469 IMP-GMP specific 5'-nu 24.0 52 0.0011 30.0 1.9 17 73-89 26-42 (424)
454 PRK15454 ethanol dehydrogenase 23.9 4.6E+02 0.0099 23.9 8.1 83 173-263 34-126 (395)
455 COG0036 Rpe Pentose-5-phosphat 23.8 4.3E+02 0.0094 22.1 11.2 98 171-272 94-199 (220)
456 PRK11468 dihydroxyacetone kina 23.7 4.9E+02 0.011 23.5 7.9 83 187-272 44-135 (356)
457 PRK03670 competence damage-ind 23.7 2.3E+02 0.0051 24.1 5.8 59 227-286 21-89 (252)
458 cd00947 TBP_aldolase_IIB Tagat 23.6 4.9E+02 0.011 22.6 9.6 103 176-282 2-111 (276)
459 PRK09423 gldA glycerol dehydro 23.6 5.4E+02 0.012 23.1 9.5 92 173-271 15-116 (366)
460 PF03465 eRF1_3: eRF1 domain 3 23.5 1.6E+02 0.0034 21.6 4.1 33 175-207 71-103 (113)
461 cd01445 TST_Repeats Thiosulfat 23.4 2.6E+02 0.0057 21.1 5.5 44 224-267 76-126 (138)
462 PRK10949 protease 4; Provision 23.3 7.2E+02 0.016 24.4 12.4 138 76-250 58-207 (618)
463 TIGR01304 IMP_DH_rel_2 IMP deh 23.3 5.7E+02 0.012 23.2 9.6 97 172-272 117-218 (369)
464 PRK00994 F420-dependent methyl 23.2 1.1E+02 0.0025 25.8 3.5 38 171-208 72-110 (277)
465 PF01993 MTD: methylene-5,6,7, 23.2 1.3E+02 0.0027 25.6 3.8 38 171-208 71-109 (276)
466 TIGR02668 moaA_archaeal probab 23.1 1.5E+02 0.0032 25.8 4.6 38 171-208 69-109 (302)
467 TIGR00441 gmhA phosphoheptose 23.0 1.1E+02 0.0024 23.6 3.4 27 172-198 92-118 (154)
468 cd02801 DUS_like_FMN Dihydrour 22.9 4.2E+02 0.0091 21.6 7.7 42 227-272 171-215 (231)
469 cd08550 GlyDH-like Glycerol_de 22.9 5.4E+02 0.012 22.9 9.8 87 178-271 14-109 (349)
470 PRK06512 thiamine-phosphate py 22.8 4.4E+02 0.0095 21.9 7.2 42 228-272 153-194 (221)
471 TIGR00877 purD phosphoribosyla 22.7 5.9E+02 0.013 23.2 9.0 104 173-282 51-168 (423)
472 PRK02261 methylaspartate mutas 22.7 3.5E+02 0.0075 20.5 11.0 96 181-283 26-130 (137)
473 PRK05835 fructose-bisphosphate 22.6 5.4E+02 0.012 22.7 10.0 105 174-282 4-116 (307)
474 PF02548 Pantoate_transf: Keto 22.6 4.8E+02 0.01 22.5 7.3 41 177-221 6-46 (261)
475 KOG1250 Threonine/serine dehyd 22.5 2.1E+02 0.0045 26.4 5.2 81 173-267 99-189 (457)
476 PF03332 PMM: Eukaryotic phosp 22.4 67 0.0015 26.8 2.1 9 177-185 130-138 (220)
477 PF02017 CIDE-N: CIDE-N domain 22.3 52 0.0011 22.5 1.2 16 75-90 41-56 (78)
478 TIGR02886 spore_II_AA anti-sig 22.3 1.5E+02 0.0033 20.9 3.8 35 177-212 62-96 (106)
479 PRK15317 alkyl hydroperoxide r 22.3 4.3E+02 0.0093 25.0 7.9 97 171-270 130-241 (517)
480 PRK11145 pflA pyruvate formate 22.2 87 0.0019 26.2 2.9 27 171-197 83-110 (246)
481 TIGR00221 nagA N-acetylglucosa 22.1 6E+02 0.013 23.1 9.0 97 151-251 152-277 (380)
482 cd00453 FTBP_aldolase_II Fruct 22.1 5.8E+02 0.013 22.9 8.1 50 230-282 76-140 (340)
483 TIGR03553 F420_FbiB_CTERM F420 21.9 1.4E+02 0.003 23.8 4.0 31 255-285 130-160 (194)
484 cd06578 HemD Uroporphyrinogen- 21.9 4.3E+02 0.0093 21.3 9.4 96 173-283 8-115 (239)
485 PRK13663 hypothetical protein; 21.8 2.1E+02 0.0046 26.4 5.2 81 172-258 51-151 (493)
486 TIGR01306 GMP_reduct_2 guanosi 21.8 5.7E+02 0.012 22.7 8.2 54 213-270 110-165 (321)
487 PRK13361 molybdenum cofactor b 21.7 1.6E+02 0.0036 26.0 4.7 40 170-209 73-116 (329)
488 PF00578 AhpC-TSA: AhpC/TSA fa 21.6 1.2E+02 0.0025 21.9 3.2 36 173-208 46-82 (124)
489 PRK01130 N-acetylmannosamine-6 21.6 4.5E+02 0.0098 21.5 9.7 98 174-279 106-211 (221)
490 PRK10765 nitroreductase A; Pro 21.6 1.3E+02 0.0029 25.2 3.9 33 254-286 114-146 (240)
491 PF13686 DrsE_2: DsrE/DsrF/Drs 21.6 86 0.0019 24.3 2.5 24 172-195 90-113 (148)
492 PRK06849 hypothetical protein; 21.5 4.1E+02 0.0088 24.0 7.3 89 176-268 66-157 (389)
493 PF10113 Fibrillarin_2: Fibril 21.5 2.1E+02 0.0045 26.5 5.1 44 229-273 209-256 (505)
494 KOG0391 SNF2 family DNA-depend 21.4 3.1E+02 0.0066 29.4 6.6 87 176-272 1266-1356(1958)
495 PF07302 AroM: AroM protein; 21.4 1.2E+02 0.0026 25.4 3.4 114 173-286 74-204 (221)
496 TIGR02744 TrbI_Ftype type-F co 21.3 84 0.0018 23.2 2.2 13 73-85 31-43 (112)
497 PF11421 Synthase_beta: ATP sy 21.3 91 0.002 19.0 1.9 19 6-24 1-19 (49)
498 KOG0025 Zn2+-binding dehydroge 21.2 3.3E+02 0.0072 24.0 6.1 54 228-283 146-205 (354)
499 COG1927 Mtd Coenzyme F420-depe 20.9 1.3E+02 0.0027 25.0 3.3 39 170-208 71-110 (277)
500 TIGR02667 moaB_proteo molybden 20.9 4.1E+02 0.009 20.8 7.5 45 227-272 23-72 (163)
No 1
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.97 E-value=2.5e-30 Score=216.31 Aligned_cols=183 Identities=26% Similarity=0.316 Sum_probs=144.2
Q ss_pred CeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccC-CC-C
Q 023114 73 THKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSST-GC-S 150 (287)
Q Consensus 73 ~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ 150 (287)
++|+|||||||||+|++..+.++|.++++++|+..+.+...+.+.. ........+..... .. .
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~---------------~~~~~~~~~~~~~~~~~~~ 65 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGG---------------GIARIIDLLRKLAAGEDPA 65 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCC---------------ChHHHHHHHHHHhcCCccc
Confidence 4699999999999999999999999999999999887665433210 00111111222111 11 1
Q ss_pred chHHHHHHH-HHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCH
Q 023114 151 DSQYFEELY-NYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNP 228 (287)
Q Consensus 151 ~~~~~~~~~-~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~ 228 (287)
+....+..+ ...........++||+.++|.+|+++|++++++||++.. +...++.+|+.++|+.+++++++..+||+|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~P 145 (221)
T COG0637 66 DLAELERLLYEAEALELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAP 145 (221)
T ss_pred CHHHHHHHHHHHHHhhhcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCC
Confidence 122222222 222223333457899999999999999999999999887 799999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECC
Q 023114 229 TIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGS 271 (287)
Q Consensus 229 ~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~ 271 (287)
++|+.++++||++|++||+|+|| .+++++|++|||.+|.+.+
T Consensus 146 d~yL~Aa~~Lgv~P~~CvviEDs-~~Gi~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 146 DIYLLAAERLGVDPEECVVVEDS-PAGIQAAKAAGMRVVGVPA 187 (221)
T ss_pred HHHHHHHHHcCCChHHeEEEecc-hhHHHHHHHCCCEEEEecC
Confidence 99999999999999999999998 9999999999999999987
No 2
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=2.2e-29 Score=212.32 Aligned_cols=184 Identities=22% Similarity=0.242 Sum_probs=137.7
Q ss_pred CeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCCc
Q 023114 73 THKALLVDAAGTLLVPSQPMAQIYREIGEKYGVA-YSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCSD 151 (287)
Q Consensus 73 ~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (287)
|+|+|||||||||+|+...+.++++.+++++|.+ .+.+.+... .+..... ..............
T Consensus 11 ~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~----~g~~~~~-----------~~~~~~~~~~~~~~ 75 (229)
T PRK13226 11 FPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPV----VSKGARA-----------MLAVAFPELDAAAR 75 (229)
T ss_pred cCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHH----hhhHHHH-----------HHHHHhccCChHHH
Confidence 5699999999999999999999999999999986 344333211 1111110 00000000000001
Q ss_pred hHHHHHHHHHHhhcc-ccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHH
Q 023114 152 SQYFEELYNYYTTEK-AWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPT 229 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~-~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~ 229 (287)
.+..+.+...|.... ....++||+.++|++|+++|++++|+||++.. +..+++.+|+.++|+.++++++.+..||+|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~ 155 (229)
T PRK13226 76 DALIPEFLQRYEALIGTQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPL 155 (229)
T ss_pred HHHHHHHHHHHHHhhhhcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHH
Confidence 222233333332221 12357899999999999999999999999877 6888999999999999999998889999999
Q ss_pred HHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 230 IFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 230 ~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
+|..+++++|++|++|++|||+ .+|+.+|+++|+.+|++..+
T Consensus 156 ~~~~~~~~l~~~p~~~l~IGDs-~~Di~aA~~aG~~~i~v~~g 197 (229)
T PRK13226 156 PLLVAAERIGVAPTDCVYVGDD-ERDILAARAAGMPSVAALWG 197 (229)
T ss_pred HHHHHHHHhCCChhhEEEeCCC-HHHHHHHHHCCCcEEEEeec
Confidence 9999999999999999999998 99999999999999887544
No 3
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.97 E-value=4.1e-29 Score=213.53 Aligned_cols=183 Identities=21% Similarity=0.306 Sum_probs=137.7
Q ss_pred CCeeEEEEeCCCCccCCCc-cHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCC
Q 023114 72 ITHKALLVDAAGTLLVPSQ-PMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCS 150 (287)
Q Consensus 72 ~~~k~vifD~DGTLid~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (287)
..+|+|||||||||+|+.. .+.++|.++++++|.+....+.... ..+.+.... + +.+........
T Consensus 22 ~~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~---~~G~~~~~~----------~-~~l~~~~~~~~ 87 (260)
T PLN03243 22 CGWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKR---AEGMKNEQA----------I-SEVLCWSRDFL 87 (260)
T ss_pred CCceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHH---hcCCCHHHH----------H-HHHhccCCCHH
Confidence 3579999999999999964 5678999999999998766554322 222221111 1 11111000000
Q ss_pred -chHH---HHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCC
Q 023114 151 -DSQY---FEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEK 225 (287)
Q Consensus 151 -~~~~---~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~K 225 (287)
..+. ++..+..+.. ....++||+.++|++|+++|++++|+||++.. +..+++.+|+.++|+.+++++++...|
T Consensus 88 ~~~~l~~~~~~~~~~~~~--~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~K 165 (260)
T PLN03243 88 QMKRLAIRKEDLYEYMQG--GLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGK 165 (260)
T ss_pred HHHHHHHHHHHHHHHHHc--cCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCC
Confidence 0011 1111111111 12357899999999999999999999999877 799999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECC
Q 023114 226 PNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGS 271 (287)
Q Consensus 226 P~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~ 271 (287)
|+|++|..+++++|++|++|++|||| .+|+.+|+++|+.+|++.+
T Consensus 166 P~Pe~~~~a~~~l~~~p~~~l~IgDs-~~Di~aA~~aG~~~i~v~g 210 (260)
T PLN03243 166 PDPEMFMYAAERLGFIPERCIVFGNS-NSSVEAAHDGCMKCVAVAG 210 (260)
T ss_pred CCHHHHHHHHHHhCCChHHeEEEcCC-HHHHHHHHHcCCEEEEEec
Confidence 99999999999999999999999998 9999999999999998863
No 4
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.97 E-value=6.7e-29 Score=208.24 Aligned_cols=193 Identities=24% Similarity=0.290 Sum_probs=140.5
Q ss_pred CeeEEEEeCCCCccCCCccHHHHHHHHH---HHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCC
Q 023114 73 THKALLVDAAGTLLVPSQPMAQIYREIG---EKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGC 149 (287)
Q Consensus 73 ~~k~vifD~DGTLid~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (287)
|+++|+||+||||+|+...+.+++..+. .++|.+.+.+++...+........... ...+...+.......
T Consensus 1 ~~~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 73 (221)
T TIGR02253 1 MIKAIFFDLDDTLIDTSGLAEKARRNAIEVLIEAGLNVDFEEAYEELLKLIKEYGSNY-------PTHFDYLIRRLWEEY 73 (221)
T ss_pred CceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHhcccc-------CcchHHHHHHHhhhc
Confidence 3689999999999999998888777554 566777776666554443221111100 000111111111111
Q ss_pred CchHHHHHHHHHHhh-ccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCC
Q 023114 150 SDSQYFEELYNYYTT-EKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPN 227 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~-~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~ 227 (287)
. .+...+....+.. ......++||+.++|+.|+++|++++|+||++.. +...++.+|+..+|+.++++++.+..||+
T Consensus 74 ~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~ 152 (221)
T TIGR02253 74 N-PKLVAAFVYAYHKLKFAYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPH 152 (221)
T ss_pred C-HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCC
Confidence 1 1122222222211 1222358999999999999999999999999876 78899999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCEEEEcCCch-hhHHHHHHcCceEEEECCCCC
Q 023114 228 PTIFLKACDLLGVKPEDAVHVGDDRR-NDVWGARDAGCDAWLWGSDVH 274 (287)
Q Consensus 228 ~~~~~~~~~~l~~~p~~~l~VGDs~~-~Di~~a~~aG~~~i~v~~~~~ 274 (287)
|++|..+++++|++|+++++|||| . +|+.+|+++|+.+|++.++..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~igDs-~~~di~~A~~aG~~~i~~~~~~~ 199 (221)
T TIGR02253 153 PKIFYAALKRLGVKPEEAVMVGDR-LDKDIKGAKNLGMKTVWINQGKS 199 (221)
T ss_pred HHHHHHHHHHcCCChhhEEEECCC-hHHHHHHHHHCCCEEEEECCCCC
Confidence 999999999999999999999998 6 899999999999999987644
No 5
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.97 E-value=9.5e-29 Score=207.54 Aligned_cols=188 Identities=19% Similarity=0.220 Sum_probs=143.5
Q ss_pred CCCeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccC--C
Q 023114 71 DITHKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSST--G 148 (287)
Q Consensus 71 ~~~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 148 (287)
.+++|+|+||+||||+|+...+..++.++++++|.+......+..+ .+.. .......+.+... .
T Consensus 4 ~~~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~---~g~~-----------~~~~~~~~~~~~~~~~ 69 (222)
T PRK10826 4 PRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDT---LGLR-----------IDQVVDLWYARQPWNG 69 (222)
T ss_pred cccCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCHHHHHHHh---hCCC-----------HHHHHHHHHHhcCCCC
Confidence 3468999999999999999999999999999999876653322111 1110 0001111111111 1
Q ss_pred CCchHHHHHHHHHHhhcc-ccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCC
Q 023114 149 CSDSQYFEELYNYYTTEK-AWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKP 226 (287)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~-~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP 226 (287)
....+..+.+.+.+.... ....++||+.++|+.|+++|++++|+||.... +..+++.+|+.++|+.++++++++.+||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp 149 (222)
T PRK10826 70 PSRQEVVQRIIARVISLIEETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKP 149 (222)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCC
Confidence 112233344443332221 12358999999999999999999999998877 7999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCC
Q 023114 227 NPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDV 273 (287)
Q Consensus 227 ~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~ 273 (287)
+|++|..+++++|++|++|++|||+ .+|+++|++||+++|++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~igDs-~~Di~aA~~aG~~~i~v~~~~ 195 (222)
T PRK10826 150 HPEVYLNCAAKLGVDPLTCVALEDS-FNGMIAAKAARMRSIVVPAPE 195 (222)
T ss_pred CHHHHHHHHHHcCCCHHHeEEEcCC-hhhHHHHHHcCCEEEEecCCc
Confidence 9999999999999999999999998 899999999999999998763
No 6
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.97 E-value=5.3e-29 Score=212.32 Aligned_cols=186 Identities=20% Similarity=0.182 Sum_probs=138.6
Q ss_pred CCCCeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCC----CCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhc
Q 023114 70 GDITHKALLVDAAGTLLVPSQPMAQIYREIGEKYGVA----YSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSS 145 (287)
Q Consensus 70 ~~~~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (287)
...++|+|||||||||+|+...+.++|.++++++|.. ...+.+.. ...+....... ..+...
T Consensus 18 ~~~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~~~~~~~~~~---~~~G~~~~~~~-----------~~~~~~ 83 (248)
T PLN02770 18 GLAPLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGVPITEEFFVE---NIAGKHNEDIA-----------LGLFPD 83 (248)
T ss_pred ccCccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCCCCCHHHHHH---HcCCCCHHHHH-----------HHHcCc
Confidence 3446799999999999999999999999999999643 33333211 11121111111 111000
Q ss_pred cCCC--CchHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCC
Q 023114 146 STGC--SDSQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVE 222 (287)
Q Consensus 146 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~ 222 (287)
.... .....++..+..... ....++||+.++|++|+++|++++|+||++.. +...++.+|+.++|+.+++++++.
T Consensus 84 ~~~~~~~~~~~~~~~y~~~~~--~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~ 161 (248)
T PLN02770 84 DLERGLKFTDDKEALFRKLAS--EQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECE 161 (248)
T ss_pred chhhHHHHHHHHHHHHHHHHH--hcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCC
Confidence 0000 000111222222211 12357899999999999999999999999888 799999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 223 AEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 223 ~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
..||+|++|..+++++|++|++|++|||+ ..|+++|+++|+++|++..+
T Consensus 162 ~~KP~p~~~~~a~~~~~~~~~~~l~vgDs-~~Di~aA~~aGi~~i~v~~g 210 (248)
T PLN02770 162 HAKPHPDPYLKALEVLKVSKDHTFVFEDS-VSGIKAGVAAGMPVVGLTTR 210 (248)
T ss_pred CCCCChHHHHHHHHHhCCChhHEEEEcCC-HHHHHHHHHCCCEEEEEeCC
Confidence 99999999999999999999999999998 99999999999999999765
No 7
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.97 E-value=6.2e-29 Score=207.52 Aligned_cols=188 Identities=21% Similarity=0.313 Sum_probs=142.3
Q ss_pred CCeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCC
Q 023114 72 ITHKALLVDAAGTLLVPSQPMAQIYREIGEKYGVA-YSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCS 150 (287)
Q Consensus 72 ~~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (287)
|++|+||||+||||+|+...+.+++.+++++++.. .+.+++... .+.... ..+... ....
T Consensus 1 m~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~G~~~~--------------~~~~~~-~~~~ 61 (214)
T PRK13288 1 MKINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPF----IGPSLH--------------DTFSKI-DESK 61 (214)
T ss_pred CCccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHH----hCcCHH--------------HHHHhc-CHHH
Confidence 56899999999999999999999999999999764 444444322 221111 111110 0000
Q ss_pred chHHHHHHHHHHhhc-cccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCH
Q 023114 151 DSQYFEELYNYYTTE-KAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNP 228 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~-~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~ 228 (287)
..+....+...+... .....++||+.++|+.|+++|++++|+||+... +..+++.+|+.++|+.++++++....||+|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p 141 (214)
T PRK13288 62 VEEMITTYREFNHEHHDELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDP 141 (214)
T ss_pred HHHHHHHHHHHHHHhhhhhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCc
Confidence 111112111111111 112357899999999999999999999999877 799999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHH
Q 023114 229 TIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEV 279 (287)
Q Consensus 229 ~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el 279 (287)
++|..++++++++|+++++|||| .+|+++|+++|+.++++..+..+..++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~iGDs-~~Di~aa~~aG~~~i~v~~g~~~~~~l 191 (214)
T PRK13288 142 EPVLKALELLGAKPEEALMVGDN-HHDILAGKNAGTKTAGVAWTIKGREYL 191 (214)
T ss_pred HHHHHHHHHcCCCHHHEEEECCC-HHHHHHHHHCCCeEEEEcCCCCCHHHH
Confidence 99999999999999999999998 999999999999999987764444443
No 8
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.97 E-value=9.1e-29 Score=207.15 Aligned_cols=185 Identities=27% Similarity=0.372 Sum_probs=141.2
Q ss_pred CCeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCC
Q 023114 72 ITHKALLVDAAGTLLVPSQPMAQIYREIGEKYGVA-YSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCS 150 (287)
Q Consensus 72 ~~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (287)
|+++.|+||+||||+|+...+..+++.+++++|.+ .....+.. + .+........+.. .......
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---ig~~~~~~~~~~~-----------~~~~~~~ 66 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQ-L---IGLGLDELIERLL-----------GEADEEA 66 (220)
T ss_pred CCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHH-H---hcCCHHHHHHHHh-----------ccccchh
Confidence 56799999999999999999999999999999998 45555422 1 1111111111000 0000000
Q ss_pred chHHHHHHHHHHhhccc---cccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCC
Q 023114 151 DSQYFEELYNYYTTEKA---WHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKP 226 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~~~---~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP 226 (287)
..+..+.+...|..... ...++||+.++|..|++.|++++|+||.+.. +...++.+|+.++|+.+++.++....||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP 146 (220)
T COG0546 67 AAELVERLREEFLTAYAELLESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKP 146 (220)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCc
Confidence 01223333333322221 1357999999999999999999999999888 7999999999999999999888999999
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 227 NPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 227 ~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
+|..+..+++++|++|++++||||| .+|+.+|++||+.++.|..|
T Consensus 147 ~P~~l~~~~~~~~~~~~~~l~VGDs-~~Di~aA~~Ag~~~v~v~~g 191 (220)
T COG0546 147 DPEPLLLLLEKLGLDPEEALMVGDS-LNDILAAKAAGVPAVGVTWG 191 (220)
T ss_pred CHHHHHHHHHHhCCChhheEEECCC-HHHHHHHHHcCCCEEEEECC
Confidence 9999999999999998899999998 99999999999999888765
No 9
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.96 E-value=4.4e-29 Score=205.88 Aligned_cols=217 Identities=34% Similarity=0.536 Sum_probs=178.0
Q ss_pred CCCCeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcc--cCCCccccccc--CChhHHHHHHhc
Q 023114 70 GDITHKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQ--PWGGSRLRYVN--DGRPFWQFIVSS 145 (287)
Q Consensus 70 ~~~~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~ 145 (287)
..|.+++|+||++|||+...+...+.|.++.+.+|++.+...+...+...+.. ..........+ ....||..+...
T Consensus 3 ~~~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~lv~~ 82 (237)
T KOG3085|consen 3 ELMRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLEYDDSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPKLVES 82 (237)
T ss_pred cccceEEEEEeCCCceeecCCccHHHHHHHHHHhCCCCCHHHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHHHHHH
Confidence 45678999999999999988889999999999999997778887777777653 22222222222 457888877777
Q ss_pred cCCCCchHHHHHHHHHH----hhcc--ccccCCccHHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEEecc
Q 023114 146 STGCSDSQYFEELYNYY----TTEK--AWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSA 219 (287)
Q Consensus 146 ~~~~~~~~~~~~~~~~~----~~~~--~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~ 219 (287)
.......+..++..+.+ .... ....+.++..++++.||+.|..++++||.+......+..+|+..+||.++.|+
T Consensus 83 ~f~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~~~l~~~~l~~~fD~vv~S~ 162 (237)
T KOG3085|consen 83 TFGKAGIDYEEELLENFSFRLFSTFAPSAWKYLDGMQELLQKLRKKGTILGIISNFDDRLRLLLLPLGLSAYFDFVVESC 162 (237)
T ss_pred HhccccchhHHHHHhhhhhheeccccccCceeccHHHHHHHHHHhCCeEEEEecCCcHHHHHHhhccCHHHhhhhhhhhh
Confidence 77666555555544322 1111 11234577779999999999999999999999899999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHHhCcC
Q 023114 220 EVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQRIGVK 286 (287)
Q Consensus 220 ~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~l~~~ 286 (287)
+.+..||+|.+|+.++++++++|++|+||||+..||+++|+++||++++|.+....++++...++++
T Consensus 163 e~g~~KPDp~If~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~~~~~~~~~~~~~~ 229 (237)
T KOG3085|consen 163 EVGLEKPDPRIFQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVDNSITALKELEYKLGID 229 (237)
T ss_pred hhccCCCChHHHHHHHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEccccchhhhhhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999998888765
No 10
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.96 E-value=1.7e-28 Score=210.08 Aligned_cols=195 Identities=18% Similarity=0.142 Sum_probs=139.8
Q ss_pred eeEEEEeCCCCccCCCcc-HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCCch
Q 023114 74 HKALLVDAAGTLLVPSQP-MAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCSDS 152 (287)
Q Consensus 74 ~k~vifD~DGTLid~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (287)
+|+|||||||||+|+... +.+++.++++++|.+.+.+++... .+.+................ .+.+........
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~----~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 76 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQITLEEARGP----MGLGKWDHIRALLKMPAVAE-RWRAKFGRLPTE 76 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCccHHHHHHh----cCccHHHHHHHHhcCHHHHH-HHHHHhCCCCCH
Confidence 589999999999998654 588999999999987666554321 22211111111100111111 111111111112
Q ss_pred HHHHHHHHHHhh----c-cccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCcc-ceEEecccCCCCC
Q 023114 153 QYFEELYNYYTT----E-KAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWF-DAVAVSAEVEAEK 225 (287)
Q Consensus 153 ~~~~~~~~~~~~----~-~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f-~~~~~~~~~~~~K 225 (287)
+.+++++..+.. . .....++||+.++|++|+++|++++|+||++.. +..+++.+|+..+| +.+++++++...|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~K 156 (253)
T TIGR01422 77 ADIEAIYEAFEPLQLAKLAEYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGR 156 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCC
Confidence 223333322221 1 112357899999999999999999999999888 79999999999986 8999999999999
Q ss_pred CCHHHHHHHHHHcCCC-CCCEEEEcCCchhhHHHHHHcCceEEEECCCCC
Q 023114 226 PNPTIFLKACDLLGVK-PEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVH 274 (287)
Q Consensus 226 P~~~~~~~~~~~l~~~-p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~ 274 (287)
|+|++|..+++++|++ |++|++|||| .+|+.+|++||+.+|+|..+..
T Consensus 157 P~p~~~~~a~~~l~~~~~~~~l~IGDs-~~Di~aA~~aGi~~i~v~~g~~ 205 (253)
T TIGR01422 157 PAPWMALKNAIELGVYDVAACVKVGDT-VPDIEEGRNAGMWTVGLILSSN 205 (253)
T ss_pred CCHHHHHHHHHHcCCCCchheEEECCc-HHHHHHHHHCCCeEEEEecCCc
Confidence 9999999999999995 9999999998 9999999999999999977654
No 11
>PRK11587 putative phosphatase; Provisional
Probab=99.96 E-value=1.3e-28 Score=206.18 Aligned_cols=181 Identities=20% Similarity=0.295 Sum_probs=134.3
Q ss_pred CCeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCCc
Q 023114 72 ITHKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCSD 151 (287)
Q Consensus 72 ~~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (287)
|++|+|||||||||+|+...+..+++++++++|.+. .+... ...+.+... .+.. +.. ....
T Consensus 1 M~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~--~~~~~---~~~g~~~~~----------~~~~-~~~---~~~~ 61 (218)
T PRK11587 1 MRCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAP--DEVLN---FIHGKQAIT----------SLRH-FMA---GASE 61 (218)
T ss_pred CCCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCH--HHHHH---HHcCCCHHH----------HHHH-Hhc---cCCc
Confidence 678999999999999999999999999999999853 22211 111111111 1111 110 1111
Q ss_pred hHHHHHHHH--HHhh-ccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCC
Q 023114 152 SQYFEELYN--YYTT-EKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPN 227 (287)
Q Consensus 152 ~~~~~~~~~--~~~~-~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~ 227 (287)
.+..+.+.. .+.. ......++||+.++|+.|+++|++++|+||++.. ....++..|+ .+|+.+++++++...||+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~~~~~i~~~~~~~~~KP~ 140 (218)
T PRK11587 62 AEIQAEFTRLEQIEATDTEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-PAPEVFVTAERVKRGKPE 140 (218)
T ss_pred HHHHHHHHHHHHHHHhhhcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-CCccEEEEHHHhcCCCCC
Confidence 111111111 1111 1122357899999999999999999999998876 6777888888 457888998888899999
Q ss_pred HHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCC
Q 023114 228 PTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDV 273 (287)
Q Consensus 228 ~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~ 273 (287)
|++|..+++++|++|++|++|||| ..|+++|++||+.+|++.++.
T Consensus 141 p~~~~~~~~~~g~~p~~~l~igDs-~~di~aA~~aG~~~i~v~~~~ 185 (218)
T PRK11587 141 PDAYLLGAQLLGLAPQECVVVEDA-PAGVLSGLAAGCHVIAVNAPA 185 (218)
T ss_pred cHHHHHHHHHcCCCcccEEEEecc-hhhhHHHHHCCCEEEEECCCC
Confidence 999999999999999999999998 999999999999999998753
No 12
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.96 E-value=2.5e-28 Score=204.63 Aligned_cols=190 Identities=23% Similarity=0.343 Sum_probs=144.2
Q ss_pred eeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCCc--
Q 023114 74 HKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCSD-- 151 (287)
Q Consensus 74 ~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 151 (287)
+|+|||||||||+|+.+.+.+++.++++++|.+.+..++...+. +. .. ....+.+.... ....
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---g~----------~~-~~~~~~~~~~~-~~~~~~ 65 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSAWM---GQ----------SK-IEAIRALLALD-GADEAE 65 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCHHHHHHhhc---CC----------CH-HHHHHHHHhcc-CCCHHH
Confidence 48999999999999999999999999999999877655533111 11 01 11111111111 1111
Q ss_pred -hHHHHHHHHHHhhcc--ccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCc--CccceEEecccCCCCC
Q 023114 152 -SQYFEELYNYYTTEK--AWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCD--HWFDAVAVSAEVEAEK 225 (287)
Q Consensus 152 -~~~~~~~~~~~~~~~--~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~--~~f~~~~~~~~~~~~K 225 (287)
.+......+.+.... ....++||+.++|++|+++|++++|+||++.. +..+++.+|+. ++|+.++++++....|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~K 145 (220)
T TIGR03351 66 AQAAFADFEERLAEAYDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGR 145 (220)
T ss_pred HHHHHHHHHHHHHHHhcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCC
Confidence 112222222222211 12358999999999999999999999999888 79999999998 9999999999999999
Q ss_pred CCHHHHHHHHHHcCCC-CCCEEEEcCCchhhHHHHHHcCceE-EEECCCCCCHHHH
Q 023114 226 PNPTIFLKACDLLGVK-PEDAVHVGDDRRNDVWGARDAGCDA-WLWGSDVHSFKEV 279 (287)
Q Consensus 226 P~~~~~~~~~~~l~~~-p~~~l~VGDs~~~Di~~a~~aG~~~-i~v~~~~~~~~el 279 (287)
|+|++|..++++++++ |++|++|||+ .+|+++|+++|+.+ |++..+..+.+++
T Consensus 146 P~p~~~~~a~~~~~~~~~~~~~~igD~-~~Di~aa~~aG~~~~i~~~~g~~~~~~~ 200 (220)
T TIGR03351 146 PAPDLILRAMELTGVQDVQSVAVAGDT-PNDLEAGINAGAGAVVGVLTGAHDAEEL 200 (220)
T ss_pred CCHHHHHHHHHHcCCCChhHeEEeCCC-HHHHHHHHHCCCCeEEEEecCCCcHHHH
Confidence 9999999999999997 7999999998 99999999999999 8887765555544
No 13
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.96 E-value=3.5e-28 Score=215.14 Aligned_cols=185 Identities=16% Similarity=0.205 Sum_probs=139.4
Q ss_pred CeeEEEEeCCCCccCCCc-cHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCC-
Q 023114 73 THKALLVDAAGTLLVPSQ-PMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCS- 150 (287)
Q Consensus 73 ~~k~vifD~DGTLid~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 150 (287)
..++|||||||||+|+.. .+..+|.++++++|.+....+.... ..+...... ...+........
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~---~~G~~~~~~-----------l~~ll~~~~~~~~ 195 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRR---VEGMKNEQA-----------ISEVLCWSRDPAE 195 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHH---hcCCCHHHH-----------HHHHhhccCCHHH
Confidence 689999999999999887 4567999999999998765544322 222211111 111111100000
Q ss_pred chHHHHHHHHHHhhcc-ccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCH
Q 023114 151 DSQYFEELYNYYTTEK-AWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNP 228 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~~-~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~ 228 (287)
..+..+...+.|.... ....++||+.++|+.|+++|++++|+||.+.. +..+++.+|+..+|+.+++++++...||+|
T Consensus 196 ~e~l~~~~~~~y~~~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~P 275 (381)
T PLN02575 196 LRRMATRKEEIYQALQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDP 275 (381)
T ss_pred HHHHHHHHHHHHHHHhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCH
Confidence 0111222222222111 11357899999999999999999999999887 799999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 229 TIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 229 ~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
++|..+++++|++|++|++|||+ ..|+++|+++|+.+|++.++
T Consensus 276 eifl~A~~~lgl~Peecl~IGDS-~~DIeAAk~AGm~~IgV~~~ 318 (381)
T PLN02575 276 EMFIYAAQLLNFIPERCIVFGNS-NQTVEAAHDARMKCVAVASK 318 (381)
T ss_pred HHHHHHHHHcCCCcccEEEEcCC-HHHHHHHHHcCCEEEEECCC
Confidence 99999999999999999999998 99999999999999999864
No 14
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.96 E-value=3.3e-28 Score=201.50 Aligned_cols=192 Identities=41% Similarity=0.636 Sum_probs=139.4
Q ss_pred eEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccc---CCCcccccccCChhHHHHHHh----ccC
Q 023114 75 KALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQP---WGGSRLRYVNDGRPFWQFIVS----SST 147 (287)
Q Consensus 75 k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~ 147 (287)
|+|+||+||||+|+...+.+++.++++++|.+....++...+...+... +.............++..... ...
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVEVSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFGRAG 80 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999877655544433322221 111100000011112122211 111
Q ss_pred CCCc---hHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEEecccCCCC
Q 023114 148 GCSD---SQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAEVEAE 224 (287)
Q Consensus 148 ~~~~---~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~~~~ 224 (287)
.... .+.++.++..+... ....++||+.++|+.|+++|++++|+||++......++.+|+..+|+.++++++.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~~~~l~~~~l~~~fd~i~~s~~~~~~ 159 (203)
T TIGR02252 81 VPDPESFEKIFEELYSYFATP-EPWQVYPDAIKLLKDLRERGLILGVISNFDSRLRGLLEALGLLEYFDFVVTSYEVGAE 159 (203)
T ss_pred CCCchhHHHHHHHHHHHhcCC-CcceeCcCHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHCCcHHhcceEEeecccCCC
Confidence 1111 22233333333222 1235789999999999999999999999876677889999999999999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCEEEEcCCch-hhHHHHHHcCceEEE
Q 023114 225 KPNPTIFLKACDLLGVKPEDAVHVGDDRR-NDVWGARDAGCDAWL 268 (287)
Q Consensus 225 KP~~~~~~~~~~~l~~~p~~~l~VGDs~~-~Di~~a~~aG~~~i~ 268 (287)
||+|++|..+++++|++|++|++|||+ . +|+.+|+++|+.+|+
T Consensus 160 KP~~~~~~~~~~~~~~~~~~~~~IgD~-~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 160 KPDPKIFQEALERAGISPEEALHIGDS-LRNDYQGARAAGWRALL 203 (203)
T ss_pred CCCHHHHHHHHHHcCCChhHEEEECCC-chHHHHHHHHcCCeeeC
Confidence 999999999999999999999999998 6 899999999999874
No 15
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.96 E-value=3.4e-28 Score=202.74 Aligned_cols=182 Identities=24% Similarity=0.340 Sum_probs=136.5
Q ss_pred EEEeCCCCccCCCccHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhc-cCCCCc---
Q 023114 77 LLVDAAGTLLVPSQPMAQIYREIGEKYGVA-YSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSS-STGCSD--- 151 (287)
Q Consensus 77 vifD~DGTLid~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--- 151 (287)
||||+||||+|+...+.++++++++++|.+ .+...+... .+... ......+... ......
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~-----------~~~~~~~~~~~~~~~~~~~~ 65 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMALAALGLPPATLARVIGF----IGNGV-----------PVLMERVLAWAGQEPDAQRV 65 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHH----hcccH-----------HHHHHHHhhccccccChHHH
Confidence 699999999999998999999999999986 344433211 11110 0111111111 111111
Q ss_pred hHHHHHHHHHHhhccc-cccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHH
Q 023114 152 SQYFEELYNYYTTEKA-WHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPT 229 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~-~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~ 229 (287)
.+..+.....+..... ...++||+.++|+.|+++|++++|+||++.. +..+++.+|+.++|+.++++++....||+|+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~ 145 (213)
T TIGR01449 66 AELRKLFDRHYEEVAGELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPD 145 (213)
T ss_pred HHHHHHHHHHHHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChH
Confidence 1122222222222211 2357999999999999999999999999877 7999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCC
Q 023114 230 IFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVH 274 (287)
Q Consensus 230 ~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~ 274 (287)
+|..+++++|++|++|++|||| .+|+.+|+++|+.++++..+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~igDs-~~d~~aa~~aG~~~i~v~~g~~ 189 (213)
T TIGR01449 146 PLLLAAERLGVAPQQMVYVGDS-RVDIQAARAAGCPSVLLTYGYR 189 (213)
T ss_pred HHHHHHHHcCCChhHeEEeCCC-HHHHHHHHHCCCeEEEEccCCC
Confidence 9999999999999999999998 9999999999999999966533
No 16
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.96 E-value=8.8e-28 Score=207.11 Aligned_cols=197 Identities=18% Similarity=0.140 Sum_probs=138.3
Q ss_pred CCeeEEEEeCCCCccCCCcc-HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCC
Q 023114 72 ITHKALLVDAAGTLLVPSQP-MAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCS 150 (287)
Q Consensus 72 ~~~k~vifD~DGTLid~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (287)
|++|+|||||||||+|+... +..++.++++++|.+.+.+++.. ..+............. ......+........
T Consensus 2 ~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~----~~G~~~~~~~~~~~~~-~~~~~~~~~~~g~~~ 76 (267)
T PRK13478 2 MKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEITLEEARG----PMGLGKWDHIRALLKM-PRVAARWQAVFGRLP 76 (267)
T ss_pred CceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCCCHHHHHH----hcCCCHHHHHHHHHhc-HHHHHHHHHHhCCCC
Confidence 45899999999999998654 47899999999998766554322 1121110000000000 001111111111111
Q ss_pred chHHHHHHHHHHh----hc-cccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCcc-ceEEecccCCC
Q 023114 151 DSQYFEELYNYYT----TE-KAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWF-DAVAVSAEVEA 223 (287)
Q Consensus 151 ~~~~~~~~~~~~~----~~-~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f-~~~~~~~~~~~ 223 (287)
..+..++++..+. .. .....++||+.++|+.|+++|++++|+||.+.. +..+++.+++..+| +.+++++++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~ 156 (267)
T PRK13478 77 TEADVDALYAAFEPLQIAKLADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPA 156 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCC
Confidence 1222222222221 11 112357899999999999999999999999888 68899999888875 89999999999
Q ss_pred CCCCHHHHHHHHHHcCCC-CCCEEEEcCCchhhHHHHHHcCceEEEECCCCC
Q 023114 224 EKPNPTIFLKACDLLGVK-PEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVH 274 (287)
Q Consensus 224 ~KP~~~~~~~~~~~l~~~-p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~ 274 (287)
.||+|++|..+++++|++ |++|++|||| .+|+.+|+++|+.+|.|..+..
T Consensus 157 ~KP~p~~~~~a~~~l~~~~~~e~l~IGDs-~~Di~aA~~aG~~~i~v~~g~~ 207 (267)
T PRK13478 157 GRPYPWMALKNAIELGVYDVAACVKVDDT-VPGIEEGLNAGMWTVGVILSGN 207 (267)
T ss_pred CCCChHHHHHHHHHcCCCCCcceEEEcCc-HHHHHHHHHCCCEEEEEccCcc
Confidence 999999999999999996 6999999998 9999999999999999987654
No 17
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.96 E-value=2e-28 Score=202.01 Aligned_cols=103 Identities=27% Similarity=0.417 Sum_probs=97.9
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
.++||+.++|++|+++|++++|+||++.. +..+++.+|+.++|+.++++++++..||+|++|..+++++|++|++|++|
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~v 171 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLFV 171 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEEE
Confidence 47899999999999999999999999887 78999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHHHcCceEEEECCCC
Q 023114 249 GDDRRNDVWGARDAGCDAWLWGSDV 273 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~~i~v~~~~ 273 (287)
||+ .+|+.+|+++|+.+|++.++.
T Consensus 172 gD~-~~Di~~A~~~G~~~i~v~r~~ 195 (198)
T TIGR01428 172 ASN-PWDLGGAKKFGFKTAWVNRPG 195 (198)
T ss_pred eCC-HHHHHHHHHCCCcEEEecCCC
Confidence 998 899999999999999998753
No 18
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.96 E-value=1.1e-27 Score=195.30 Aligned_cols=179 Identities=22% Similarity=0.344 Sum_probs=133.3
Q ss_pred EEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCCch---
Q 023114 76 ALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCSDS--- 152 (287)
Q Consensus 76 ~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 152 (287)
+||||+||||+|+...+..++.++++++|.+.+..... .+ .+ .+....+...+.......+..
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~-~~---~g----------~~~~~~~~~~~~~~~~~~~~~~~~ 66 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFDEEFNE-SL---KG----------VSREDSLERILDLGGKKYSEEEKE 66 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCCHHHHH-Hh---cC----------CChHHHHHHHHHhcCCCCCHHHHH
Confidence 48999999999999999999999999999886544321 11 11 111112222222222111211
Q ss_pred HHHHHHHHHHh---hccccccCCccHHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEEecccCCCCCCCHH
Q 023114 153 QYFEELYNYYT---TEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAEVEAEKPNPT 229 (287)
Q Consensus 153 ~~~~~~~~~~~---~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~ 229 (287)
+..+.....+. .......++||+.++|+.|+++|++++|+||+. .....++.+|+.++|+.++++++.+..||+|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~-~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~ 145 (185)
T TIGR01990 67 ELAERKNDYYVELLKELTPADVLPGIKNLLDDLKKNNIKIALASASK-NAPTVLEKLGLIDYFDAIVDPAEIKKGKPDPE 145 (185)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHCCCeEEEEeCCc-cHHHHHHhcCcHhhCcEEEehhhcCCCCCChH
Confidence 11222111222 111123578999999999999999999999864 35678999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEEC
Q 023114 230 IFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWG 270 (287)
Q Consensus 230 ~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~ 270 (287)
+|..++++++++|++|++|||+ .+|+++|+++|+++|.|+
T Consensus 146 ~~~~~~~~~~~~~~~~v~vgD~-~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 146 IFLAAAEGLGVSPSECIGIEDA-QAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred HHHHHHHHcCCCHHHeEEEecC-HHHHHHHHHcCCEEEecC
Confidence 9999999999999999999998 999999999999999874
No 19
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.96 E-value=1.7e-27 Score=200.02 Aligned_cols=193 Identities=23% Similarity=0.316 Sum_probs=137.8
Q ss_pred eeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCC----hhHHHHHHhccCCC
Q 023114 74 HKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDG----RPFWQFIVSSSTGC 149 (287)
Q Consensus 74 ~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 149 (287)
+|+|+||+||||+|+...+.+++.++++++|.+..... ...+.......+........... ..+...........
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGIPLTEDM-FAQYKEINQGLWRAYEEGKITKDEVVNTRFSALLKEYNTEA 79 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHhCCCccHHH-HHHHHHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCC
Confidence 48999999999999999999999999999998754332 22222211111110000000000 01111122222111
Q ss_pred CchHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCH
Q 023114 150 SDSQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNP 228 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~ 228 (287)
..+.+...+..+... ...++||+.++|++|+++ ++++|+||++.. +...++.+|+..+|+.++++++.+..||+|
T Consensus 80 -~~~~~~~~~~~~~~~--~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~ 155 (224)
T TIGR02254 80 -DEALLNQKYLRFLEE--GHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDK 155 (224)
T ss_pred -cHHHHHHHHHHHHhc--cCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCH
Confidence 111122222222111 234789999999999999 999999999887 788999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCCCCCEEEEcCCch-hhHHHHHHcCceEEEECCC
Q 023114 229 TIFLKACDLL-GVKPEDAVHVGDDRR-NDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 229 ~~~~~~~~~l-~~~p~~~l~VGDs~~-~Di~~a~~aG~~~i~v~~~ 272 (287)
++|..+++++ |++|++|++|||+ . +|+.+|+++|+.+|++..+
T Consensus 156 ~~~~~~~~~~~~~~~~~~v~igD~-~~~di~~A~~~G~~~i~~~~~ 200 (224)
T TIGR02254 156 EIFNYALERMPKFSKEEVLMIGDS-LTADIKGGQNAGLDTCWMNPD 200 (224)
T ss_pred HHHHHHHHHhcCCCchheEEECCC-cHHHHHHHHHCCCcEEEECCC
Confidence 9999999999 9999999999998 7 8999999999999998754
No 20
>PRK09449 dUMP phosphatase; Provisional
Probab=99.96 E-value=2.6e-27 Score=199.10 Aligned_cols=190 Identities=20% Similarity=0.276 Sum_probs=131.9
Q ss_pred CCeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHH----HHHHhccC
Q 023114 72 ITHKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFW----QFIVSSST 147 (287)
Q Consensus 72 ~~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 147 (287)
|++|+|+||+||||+|.. ..+++.++++.+|...+...+ ..+.......+.. ..........+. ..+.+. .
T Consensus 1 m~~k~iiFDlDGTLid~~--~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~ 75 (224)
T PRK09449 1 MKYDWILFDADETLFHFD--AFAGLQRMFSRYGVDFTAEDF-QDYQAVNKPLWVD-YQNGAITALQLQHTRFESWAEK-L 75 (224)
T ss_pred CCccEEEEcCCCchhcch--hhHHHHHHHHHhCCCCcHHHH-HHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHH-c
Confidence 568999999999999843 467888999999987654433 2221111111000 000000001110 011111 1
Q ss_pred CCCchHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCC
Q 023114 148 GCSDSQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKP 226 (287)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP 226 (287)
.....+..+.+...+... ..++||+.++|+.|+ +|++++|+||++.. +...++.+|+..+|+.++++++.+..||
T Consensus 76 ~~~~~~~~~~~~~~~~~~---~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP 151 (224)
T PRK09449 76 NVTPGELNSAFLNAMAEI---CTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKP 151 (224)
T ss_pred CCCHHHHHHHHHHHHhhc---CccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCC
Confidence 111122222222222221 347899999999999 57999999999877 6888999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCCC-CCEEEEcCCch-hhHHHHHHcCceEEEECC
Q 023114 227 NPTIFLKACDLLGVKP-EDAVHVGDDRR-NDVWGARDAGCDAWLWGS 271 (287)
Q Consensus 227 ~~~~~~~~~~~l~~~p-~~~l~VGDs~~-~Di~~a~~aG~~~i~v~~ 271 (287)
+|++|..+++++|+.| ++|++|||+ . +|+.+|+++|+.++++..
T Consensus 152 ~p~~~~~~~~~~~~~~~~~~~~vgD~-~~~Di~~A~~aG~~~i~~~~ 197 (224)
T PRK09449 152 DVAIFDYALEQMGNPDRSRVLMVGDN-LHSDILGGINAGIDTCWLNA 197 (224)
T ss_pred CHHHHHHHHHHcCCCCcccEEEEcCC-cHHHHHHHHHCCCcEEEECC
Confidence 9999999999999854 789999998 7 799999999999999874
No 21
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.96 E-value=1.8e-27 Score=205.31 Aligned_cols=189 Identities=20% Similarity=0.322 Sum_probs=140.3
Q ss_pred CCCCeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhcc--C
Q 023114 70 GDITHKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSS--T 147 (287)
Q Consensus 70 ~~~~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 147 (287)
+.-++|+|||||||||+|+...+..+++++++++|.+....+....+ .+... ...+...+.... .
T Consensus 9 ~~~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~---~g~~~----------~~~~~~~l~~~~~~~ 75 (272)
T PRK13223 9 PGRLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHW---VGNGA----------PVLVRRALAGSIDHD 75 (272)
T ss_pred CCccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHH---hChhH----------HHHHHHHhccccccc
Confidence 33467999999999999999999999999999999875332222111 11110 000111110000 0
Q ss_pred CCC---chHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCC
Q 023114 148 GCS---DSQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEA 223 (287)
Q Consensus 148 ~~~---~~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~ 223 (287)
... ..+..+.+.+.+........++||+.++|+.|+++|++++|+||.+.. +..+++.+|+..+|+.++++++...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~ 155 (272)
T PRK13223 76 GVDDELAEQALALFMEAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQ 155 (272)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCC
Confidence 011 011222222223222222457899999999999999999999999887 7889999999999999999999988
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 224 EKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 224 ~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
.||+|++|+.+++++|++|++|++|||+ .+|+++|+++|++++++..+
T Consensus 156 ~Kp~p~~~~~~~~~~g~~~~~~l~IGD~-~~Di~aA~~aGi~~i~v~~G 203 (272)
T PRK13223 156 KKPDPAALLFVMKMAGVPPSQSLFVGDS-RSDVLAAKAAGVQCVALSYG 203 (272)
T ss_pred CCCCcHHHHHHHHHhCCChhHEEEECCC-HHHHHHHHHCCCeEEEEecC
Confidence 9999999999999999999999999997 99999999999999998765
No 22
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.96 E-value=2.4e-27 Score=196.60 Aligned_cols=182 Identities=25% Similarity=0.215 Sum_probs=136.2
Q ss_pred EEEeCCCCccCCCccHHHHHHHHHHHh-CCC-CCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCCchHH
Q 023114 77 LLVDAAGTLLVPSQPMAQIYREIGEKY-GVA-YSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCSDSQY 154 (287)
Q Consensus 77 vifD~DGTLid~~~~~~~~~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (287)
|||||||||+|+...+.++++++++++ |.+ .+.+.+ ....+..+... +.... ... ..
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~--------------~~~~~--~~~-~~ 59 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDGPAPFEEY----RRHLGRYFPDI--------------MRIMG--LPL-EM 59 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhcCCCCCCHHHH----HHHhCccHHHH--------------HHHcC--CCH-HH
Confidence 699999999999999999999999884 764 333332 22222221111 11100 000 01
Q ss_pred HHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHH
Q 023114 155 FEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLK 233 (287)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~ 233 (287)
.+.....+........++||+.++|++|+++|++++|+||++.. +...++.+|+.++|+.++++++...+||+|++|..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~ 139 (205)
T TIGR01454 60 EEPFVRESYRLAGEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVRE 139 (205)
T ss_pred HHHHHHHHHHhhcccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHH
Confidence 11111111111222457999999999999999999999999877 78899999999999999999998899999999999
Q ss_pred HHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHH
Q 023114 234 ACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVA 280 (287)
Q Consensus 234 ~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~ 280 (287)
+++++|++|++|++|||+ .+|+.+|+++|+++|.+..+..+.+++.
T Consensus 140 ~~~~~~~~~~~~l~igD~-~~Di~aA~~~Gi~~i~~~~g~~~~~~l~ 185 (205)
T TIGR01454 140 ALRLLDVPPEDAVMVGDA-VTDLASARAAGTATVAALWGEGDAGELL 185 (205)
T ss_pred HHHHcCCChhheEEEcCC-HHHHHHHHHcCCeEEEEEecCCChhhhh
Confidence 999999999999999998 9999999999999988876655555443
No 23
>PLN02940 riboflavin kinase
Probab=99.96 E-value=1.3e-27 Score=215.03 Aligned_cols=185 Identities=21% Similarity=0.297 Sum_probs=142.8
Q ss_pred eeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCCchH
Q 023114 74 HKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCSDSQ 153 (287)
Q Consensus 74 ~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (287)
+|+||||+||||+|+...+.+++.++++++|.+.+..++.. ..+.. ....+...+..........+
T Consensus 11 ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~~~~~~----~~G~~----------~~~~~~~~~~~~~~~~~~~~ 76 (382)
T PLN02940 11 VSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQK----IVGKT----------PLEAAATVVEDYGLPCSTDE 76 (382)
T ss_pred CCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHH----hcCCC----------HHHHHHHHHHHhCCCCCHHH
Confidence 69999999999999999999999999999998776555321 11111 11112222221122222233
Q ss_pred HHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHH-hcCCcCccceEEecccCCCCCCCHHHH
Q 023114 154 YFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLR-ALNCDHWFDAVAVSAEVEAEKPNPTIF 231 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~-~~gl~~~f~~~~~~~~~~~~KP~~~~~ 231 (287)
..+...+.+........++||+.++|++|+++|++++|+||.+.. +...++ ..|+.++|+.+++++++...||+|++|
T Consensus 77 ~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~ 156 (382)
T PLN02940 77 FNSEITPLLSEQWCNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIF 156 (382)
T ss_pred HHHHHHHHHHHHHccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHH
Confidence 333333333332223357899999999999999999999999877 677776 789999999999999999999999999
Q ss_pred HHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCC
Q 023114 232 LKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDV 273 (287)
Q Consensus 232 ~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~ 273 (287)
..+++++|++|++|++|||+ .+|+++|+++|+.+|++.++.
T Consensus 157 ~~a~~~lgv~p~~~l~VGDs-~~Di~aA~~aGi~~I~v~~g~ 197 (382)
T PLN02940 157 LEAAKRLNVEPSNCLVIEDS-LPGVMAGKAAGMEVIAVPSIP 197 (382)
T ss_pred HHHHHHcCCChhHEEEEeCC-HHHHHHHHHcCCEEEEECCCC
Confidence 99999999999999999998 999999999999999998753
No 24
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.96 E-value=1.5e-27 Score=195.13 Aligned_cols=180 Identities=24% Similarity=0.320 Sum_probs=134.1
Q ss_pred CeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHh-ccCCCCc
Q 023114 73 THKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVS-SSTGCSD 151 (287)
Q Consensus 73 ~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 151 (287)
++|+||||+||||+|+...+.+++.++++++|.+.+...+.. ..+.. ...+...+.. .......
T Consensus 4 ~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~----~~g~~-----------~~~~~~~~~~~~~~~~~~ 68 (188)
T PRK10725 4 RYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDEQAMVA----LNGSP-----------TWRIAQAIIELNQADLDP 68 (188)
T ss_pred cceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCHHHHHH----hcCCC-----------HHHHHHHHHHHhCCCCCH
Confidence 369999999999999999999999999999998765443311 11110 1111222222 1112222
Q ss_pred hHHHHHHHHHHhhc-cccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHH
Q 023114 152 SQYFEELYNYYTTE-KAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPT 229 (287)
Q Consensus 152 ~~~~~~~~~~~~~~-~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~ 229 (287)
.+........+... .....++|+ .++|.+|++. ++++|+||++.. +..+++.+|+.++|+.++++++....||+|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~ 146 (188)
T PRK10725 69 HALAREKTEAVKSMLLDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPD 146 (188)
T ss_pred HHHHHHHHHHHHHHHhccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCChH
Confidence 22222222112111 111246786 5899999876 899999999877 7999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEEC
Q 023114 230 IFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWG 270 (287)
Q Consensus 230 ~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~ 270 (287)
+|..+++++|++|++|++|||+ .+|+++|+++|+++|.+.
T Consensus 147 ~~~~~~~~~~~~~~~~l~igDs-~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 147 TFLRCAQLMGVQPTQCVVFEDA-DFGIQAARAAGMDAVDVR 186 (188)
T ss_pred HHHHHHHHcCCCHHHeEEEecc-HhhHHHHHHCCCEEEeec
Confidence 9999999999999999999997 999999999999999875
No 25
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.95 E-value=2e-27 Score=199.32 Aligned_cols=182 Identities=17% Similarity=0.230 Sum_probs=137.0
Q ss_pred CeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCCch
Q 023114 73 THKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCSDS 152 (287)
Q Consensus 73 ~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (287)
++|+|+||+||||+|+...+.++|.++++++|.+.+.+++...+. + +.....+..............
T Consensus 3 ~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~---g----------~~~~~~~~~~~~~~~~~~~~~ 69 (221)
T PRK10563 3 QIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFK---G----------VKLYEIIDIISKEHGVTLAKA 69 (221)
T ss_pred CCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHhc---C----------CCHHHHHHHHHHHhCCCCCHH
Confidence 479999999999999999889999999999998876655433221 1 111122222222222222223
Q ss_pred HHHHHHHHHHhhc-cccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccc-eEEecccCCCCCCCHH
Q 023114 153 QYFEELYNYYTTE-KAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFD-AVAVSAEVEAEKPNPT 229 (287)
Q Consensus 153 ~~~~~~~~~~~~~-~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~-~~~~~~~~~~~KP~~~ 229 (287)
+....+...+... .....++||+.++|+.|+ ++++|+||++.. +...++.+|+.++|+ .++++++++..||+|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~gv~~~L~~L~---~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~ 146 (221)
T PRK10563 70 ELEPVYRAEVARLFDSELEPIAGANALLESIT---VPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPA 146 (221)
T ss_pred HHHHHHHHHHHHHHHccCCcCCCHHHHHHHcC---CCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChH
Confidence 3322222222211 122457899999999993 899999999877 788999999999996 6778888899999999
Q ss_pred HHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECC
Q 023114 230 IFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGS 271 (287)
Q Consensus 230 ~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~ 271 (287)
+|..+++++|++|++|++|||+ .+|+++|+++|+.++++..
T Consensus 147 ~~~~a~~~~~~~p~~~l~igDs-~~di~aA~~aG~~~i~~~~ 187 (221)
T PRK10563 147 LMFHAAEAMNVNVENCILVDDS-SAGAQSGIAAGMEVFYFCA 187 (221)
T ss_pred HHHHHHHHcCCCHHHeEEEeCc-HhhHHHHHHCCCEEEEECC
Confidence 9999999999999999999998 9999999999999998854
No 26
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.95 E-value=3.3e-27 Score=192.49 Aligned_cols=179 Identities=25% Similarity=0.369 Sum_probs=133.9
Q ss_pred eeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCCchH
Q 023114 74 HKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCSDSQ 153 (287)
Q Consensus 74 ~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (287)
+|+|+||+||||+|+...+..++..+++++|.+.+. .... ...+ ......+...+........ .+
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~-~~~~---~~~g----------~~~~~~~~~~~~~~~~~~~-~~ 65 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFDK-QYNT---SLGG----------LSREDILRAILKLRKPGLS-LE 65 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCCH-HHHH---HcCC----------CCHHHHHHHHHHhcCCCCC-HH
Confidence 478999999999999999999999999999987552 2211 1111 1111222222222111112 12
Q ss_pred HHHHHH----HHHhhc--cccccCCccHHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEEecccCCCCCCC
Q 023114 154 YFEELY----NYYTTE--KAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAEVEAEKPN 227 (287)
Q Consensus 154 ~~~~~~----~~~~~~--~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~~~~KP~ 227 (287)
.++.+. ..+... .....++||+.++|+.|+++|++++++||+ ..+..+++.+|+.++|+.++++++.+..||+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~-~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~ 144 (185)
T TIGR02009 66 TIHQLAERKNELYRELLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS-KNADRILAKLGLTDYFDAIVDADEVKEGKPH 144 (185)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc-hhHHHHHHHcChHHHCCEeeehhhCCCCCCC
Confidence 222221 122111 112358999999999999999999999998 5588899999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEE
Q 023114 228 PTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLW 269 (287)
Q Consensus 228 ~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v 269 (287)
|++|..++++++++|+++++|||+ .+|+++|+++|+++|.|
T Consensus 145 ~~~~~~~~~~~~~~~~~~v~IgD~-~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 145 PETFLLAAELLGVSPNECVVFEDA-LAGVQAARAAGMFAVAV 185 (185)
T ss_pred hHHHHHHHHHcCCCHHHeEEEeCc-HhhHHHHHHCCCeEeeC
Confidence 999999999999999999999998 99999999999999874
No 27
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.95 E-value=1e-26 Score=195.51 Aligned_cols=187 Identities=26% Similarity=0.355 Sum_probs=140.1
Q ss_pred CCCeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCC
Q 023114 71 DITHKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAY-SEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGC 149 (287)
Q Consensus 71 ~~~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (287)
.|++++|+||+||||+|+...+..++..+++++|.+. +...+ ..+ .+.... ..+...+.......
T Consensus 3 ~~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~g~~~~----------~~~~~~~~~~~~~~ 68 (226)
T PRK13222 3 FMDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERV-RTW---VGNGAD----------VLVERALTWAGREP 68 (226)
T ss_pred CCcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCCHHHH-HHH---hCccHH----------HHHHHHHhhccCCc
Confidence 4678999999999999998888899999999999864 33332 211 111100 11111111111111
Q ss_pred Cc---hHHHHHHHHHHhhccc-cccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCC
Q 023114 150 SD---SQYFEELYNYYTTEKA-WHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAE 224 (287)
Q Consensus 150 ~~---~~~~~~~~~~~~~~~~-~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~ 224 (287)
.. ..........+..... ...++||+.++++.|++.|++++|+||+... +..+++.+|+..+|+.++++++....
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~ 148 (226)
T PRK13222 69 DEELLEKLRELFDRHYAENVAGGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNK 148 (226)
T ss_pred cHHHHHHHHHHHHHHHHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCCCC
Confidence 11 1122222222322211 2457899999999999999999999999877 78999999999999999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 225 KPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 225 KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
||+|++|..++++++++|++|++|||+ .+|+.+|+++|+.++++..+
T Consensus 149 kp~~~~~~~~~~~~~~~~~~~i~igD~-~~Di~~a~~~g~~~i~v~~g 195 (226)
T PRK13222 149 KPDPAPLLLACEKLGLDPEEMLFVGDS-RNDIQAARAAGCPSVGVTYG 195 (226)
T ss_pred CcChHHHHHHHHHcCCChhheEEECCC-HHHHHHHHHCCCcEEEECcC
Confidence 999999999999999999999999998 99999999999999998765
No 28
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.95 E-value=1.5e-26 Score=198.96 Aligned_cols=187 Identities=14% Similarity=0.150 Sum_probs=136.9
Q ss_pred CeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCC-c
Q 023114 73 THKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCS-D 151 (287)
Q Consensus 73 ~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 151 (287)
++|+|||||||||+|+.+.+..+++++++++|.+....+....+ .+... ...+........ .
T Consensus 61 ~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~---~g~~~--------------~~i~~~~~~~~~~~ 123 (273)
T PRK13225 61 TLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQL---RQWSS--------------RTIVRRAGLSPWQQ 123 (273)
T ss_pred hcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHH---hCccH--------------HHHHHHcCCCHHHH
Confidence 47999999999999999999999999999999864333322221 11110 011111110000 1
Q ss_pred hHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHH
Q 023114 152 SQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTI 230 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~ 230 (287)
.+..+.....+........++||+.++|+.|+++|++++|+||+... +..+++.+|+.++|+.++++++. +++++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~---~~k~~~ 200 (273)
T PRK13225 124 ARLLQRVQRQLGDCLPALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPI---LSKRRA 200 (273)
T ss_pred HHHHHHHHHHHHhhcccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCC---CCCHHH
Confidence 12222222222222222457899999999999999999999999888 79999999999999998877654 356789
Q ss_pred HHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHH
Q 023114 231 FLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVA 280 (287)
Q Consensus 231 ~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~ 280 (287)
|..++++++++|++|++|||+ .+|+.+|++||+.+|++..+..+.+++.
T Consensus 201 ~~~~l~~~~~~p~~~l~IGDs-~~Di~aA~~AG~~~I~v~~g~~~~~~l~ 249 (273)
T PRK13225 201 LSQLVAREGWQPAAVMYVGDE-TRDVEAARQVGLIAVAVTWGFNDRQSLV 249 (273)
T ss_pred HHHHHHHhCcChhHEEEECCC-HHHHHHHHHCCCeEEEEecCCCCHHHHH
Confidence 999999999999999999998 9999999999999999988755554443
No 29
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.95 E-value=4.1e-27 Score=204.32 Aligned_cols=190 Identities=18% Similarity=0.250 Sum_probs=129.8
Q ss_pred eeEEEEeCCCCccCCC-ccHHHHHHHHHHHhCCC-C--CHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhcc---
Q 023114 74 HKALLVDAAGTLLVPS-QPMAQIYREIGEKYGVA-Y--SEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSS--- 146 (287)
Q Consensus 74 ~k~vifD~DGTLid~~-~~~~~~~~~~~~~~g~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 146 (287)
+++|||||||||+|+. ..+.++|.++++++|++ . +... ...+.. .+..... +...+....
T Consensus 40 ~k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~G~~~~~~~~~~-~~~~~~-~g~~~~~-----------~~~~~~~~~~~~ 106 (286)
T PLN02779 40 PEALLFDCDGVLVETERDGHRVAFNDAFKEFGLRPVEWDVEL-YDELLN-IGGGKER-----------MTWYFNENGWPT 106 (286)
T ss_pred CcEEEEeCceeEEccccHHHHHHHHHHHHHcCCCCCCCCHHH-HHHHHc-cCCChHH-----------HHHHHHHcCCCc
Confidence 3899999999999999 88999999999999983 2 2221 111111 1111000 000000000
Q ss_pred -----CCCCc---hHHHHHH----HHHHhhccc--cccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCc
Q 023114 147 -----TGCSD---SQYFEEL----YNYYTTEKA--WHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHW 211 (287)
Q Consensus 147 -----~~~~~---~~~~~~~----~~~~~~~~~--~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~ 211 (287)
..... .+..+.+ ...|..... ...++||+.++|+.|+++|++++|+||++.. +..+++.++...+
T Consensus 107 ~~~~~~~~~~e~~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~ 186 (286)
T PLN02779 107 STIEKAPKDEEERKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPER 186 (286)
T ss_pred cccccCCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccc
Confidence 00000 1111111 111221111 1247899999999999999999999999877 6777777643333
Q ss_pred ---cceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHH
Q 023114 212 ---FDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKE 278 (287)
Q Consensus 212 ---f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~e 278 (287)
|+.+ +++++...||+|++|..+++++|++|++|++|||+ .+|+++|+++|+.+|++.++.++.++
T Consensus 187 ~~~~~~v-~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs-~~Di~aA~~aG~~~i~v~~g~~~~~~ 254 (286)
T PLN02779 187 AQGLDVF-AGDDVPKKKPDPDIYNLAAETLGVDPSRCVVVEDS-VIGLQAAKAAGMRCIVTKSSYTADED 254 (286)
T ss_pred cCceEEE-eccccCCCCCCHHHHHHHHHHhCcChHHEEEEeCC-HHhHHHHHHcCCEEEEEccCCccccc
Confidence 4444 78888889999999999999999999999999998 99999999999999999877554443
No 30
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.95 E-value=1.9e-26 Score=195.49 Aligned_cols=194 Identities=18% Similarity=0.170 Sum_probs=130.0
Q ss_pred CeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCC------CCHHHHHHHHHHHhcccCCCcccccc-cCChhHHHHHHhc
Q 023114 73 THKALLVDAAGTLLVPSQPMAQIYREIGEKYGVA------YSEAEILNRYRRAYEQPWGGSRLRYV-NDGRPFWQFIVSS 145 (287)
Q Consensus 73 ~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 145 (287)
++|+|+||+||||+|+...+..+++++++.++.. ..... ...+................ .....+...+...
T Consensus 9 ~~k~iiFDlDGTL~D~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 87 (238)
T PRK10748 9 RISALTFDLDDTLYDNRPVILRTEQEALAFVQNYHPALRSFQNED-LQRLRQALREAEPEIYHDVTRWRWRAIEQAMLDA 87 (238)
T ss_pred CceeEEEcCcccccCChHHHHHHHHHHHHHHHHhCcchhhCCHHH-HHHHHHHHHHhCchhhCcHHHHHHHHHHHHHHHc
Confidence 4699999999999999998888888877665311 11111 11222222111111110000 0012222222222
Q ss_pred cCCCCch-HHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEEecccCCCC
Q 023114 146 STGCSDS-QYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAEVEAE 224 (287)
Q Consensus 146 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~~~~ 224 (287)
....... ...+.....+........++||+.++|+.|++. ++++|+||++.. ++..|+.++|+.++++++.+..
T Consensus 88 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~----~~~~gl~~~fd~i~~~~~~~~~ 162 (238)
T PRK10748 88 GLSAEEASAGADAAMINFAKWRSRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ----PELFGLGDYFEFVLRAGPHGRS 162 (238)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHcC-CCEEEEECCCch----HHHCCcHHhhceeEecccCCcC
Confidence 2111111 112222222222112234789999999999876 999999998765 4778999999999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 225 KPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 225 KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
||+|++|..+++++|++|++|++|||+...|+.+|+++|++++++.++
T Consensus 163 KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~ 210 (238)
T PRK10748 163 KPFSDMYHLAAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPE 210 (238)
T ss_pred CCcHHHHHHHHHHcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCC
Confidence 999999999999999999999999997459999999999999999764
No 31
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.95 E-value=3.2e-26 Score=192.12 Aligned_cols=102 Identities=14% Similarity=0.177 Sum_probs=95.3
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
.++||+.++|+.|+++|++++|+||++.. +...++.+|+.++|+.++++++.+..||+|++|..+++++|++|++|++|
T Consensus 93 ~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~i 172 (224)
T PRK14988 93 VLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTLFI 172 (224)
T ss_pred CcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEEEE
Confidence 47899999999999999999999998877 78889999999999999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHHHcCceE-EEECCC
Q 023114 249 GDDRRNDVWGARDAGCDA-WLWGSD 272 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~~-i~v~~~ 272 (287)
||+ .+|+++|+++|+.+ ++|.++
T Consensus 173 gDs-~~di~aA~~aG~~~~~~v~~~ 196 (224)
T PRK14988 173 DDS-EPILDAAAQFGIRYCLGVTNP 196 (224)
T ss_pred cCC-HHHHHHHHHcCCeEEEEEeCC
Confidence 998 99999999999985 667654
No 32
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.95 E-value=5.1e-27 Score=195.52 Aligned_cols=202 Identities=17% Similarity=0.189 Sum_probs=135.5
Q ss_pred eeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccC---ChhHHHHHHhcc-CCC
Q 023114 74 HKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVND---GRPFWQFIVSSS-TGC 149 (287)
Q Consensus 74 ~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~ 149 (287)
+|+|||||||||+|+.. +.+.|...+...|.+ ..+....+ .+............+ ...+...+.+.. ...
T Consensus 2 ik~viFDldGtL~d~~~-~~~~~~~~~~~~g~~--~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 75 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSPG-VMRRWETERGLPGLK--DFIVTVNI---TGPDFNPWARTFERGELTAEAFDGLFRHEYGLRL 75 (211)
T ss_pred ceEEEEecCCceecCHH-HHHHHHHHcCCCCCc--cHHHHHHh---cCCCCChHHHHHHcCCCCHHHHHHHHHHHhcccc
Confidence 48999999999999865 566666555444543 12221111 111111100001111 122222222211 111
Q ss_pred CchHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc---hHHHHHhcCCcCccceEEecccCCCCCC
Q 023114 150 SDSQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR---LRPVLRALNCDHWFDAVAVSAEVEAEKP 226 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~---~~~~l~~~gl~~~f~~~~~~~~~~~~KP 226 (287)
.....++.++..+... ...++||+.++|+.|+++|++++|+||+... ....+...++.++|+.++++++.+..||
T Consensus 76 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP 153 (211)
T TIGR02247 76 GHDVRIAPVFPLLYGE--NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKP 153 (211)
T ss_pred CCCcCchhhHHHHhcc--ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCC
Confidence 1111122222222111 2347899999999999999999999998654 2334455688899999999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHHhC
Q 023114 227 NPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQRIG 284 (287)
Q Consensus 227 ~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~l~ 284 (287)
+|++|..+++++|++|++|++|||+ ..|+.+|+++|+.+|++.++....++|..+++
T Consensus 154 ~p~~~~~~~~~~g~~~~~~l~i~D~-~~di~aA~~aG~~~i~v~~~~~~~~~l~~~~~ 210 (211)
T TIGR02247 154 DPRIYQLMLERLGVAPEECVFLDDL-GSNLKPAAALGITTIKVSDEEQAIHDLEKATK 210 (211)
T ss_pred CHHHHHHHHHHcCCCHHHeEEEcCC-HHHHHHHHHcCCEEEEECCHHHHHHHHHHHhC
Confidence 9999999999999999999999997 99999999999999999988777788887764
No 33
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.94 E-value=2e-26 Score=185.34 Aligned_cols=174 Identities=24% Similarity=0.425 Sum_probs=130.8
Q ss_pred EEEeCCCCccCCCccHHHHHHH-HHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCCchHHH
Q 023114 77 LLVDAAGTLLVPSQPMAQIYRE-IGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCSDSQYF 155 (287)
Q Consensus 77 vifD~DGTLid~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (287)
|+||+||||+|+...+.+.+.. +++.+|.+.....+.. ..+. .....+...+...... ...+
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----------~~~~~~~~~~~~~~~~---~~~~ 63 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLEISAEELRE----LFGK----------SYEEALERLLERFGID---PEEI 63 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTTHHHHHHHHHH----HTTS----------HHHHHHHHHHHHHHHH---HHHH
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhCCCCCHHHHHH----HhCC----------CHHHHHHHhhhccchh---HHHH
Confidence 7999999999988877888887 4777776533323221 1110 1111122222211111 2223
Q ss_pred HHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHH
Q 023114 156 EELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKA 234 (287)
Q Consensus 156 ~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~ 234 (287)
.+.+.++. ......++||+.++|+.|+++|++++++||.+.. +...++.+|+.++|+.++++++.+..||+++.|..+
T Consensus 64 ~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~ 142 (176)
T PF13419_consen 64 QELFREYN-LESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRA 142 (176)
T ss_dssp HHHHHHHH-HHGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHH
T ss_pred HHHhhhhh-hhhccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHH
Confidence 33333331 1123457899999999999999999999999887 799999999999999999999999999999999999
Q ss_pred HHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEE
Q 023114 235 CDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLW 269 (287)
Q Consensus 235 ~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v 269 (287)
++++|++|+++++|||+ ..|+.+|+++|+.+|+|
T Consensus 143 ~~~~~~~p~~~~~vgD~-~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 143 LEKLGIPPEEILFVGDS-PSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp HHHHTSSGGGEEEEESS-HHHHHHHHHTTSEEEEE
T ss_pred HHHcCCCcceEEEEeCC-HHHHHHHHHcCCeEEeC
Confidence 99999999999999998 89999999999999986
No 34
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.94 E-value=3e-25 Score=186.90 Aligned_cols=196 Identities=29% Similarity=0.322 Sum_probs=131.0
Q ss_pred CCeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHH--HHHHHHHhcccCCCcccccccCC-hhHHHHHHhccCC
Q 023114 72 ITHKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEI--LNRYRRAYEQPWGGSRLRYVNDG-RPFWQFIVSSSTG 148 (287)
Q Consensus 72 ~~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 148 (287)
|++|+|+||+||||++............+...+........ ....................... ..+. ........
T Consensus 2 ~~~k~i~FD~d~TL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (229)
T COG1011 2 MMIKAILFDLDGTLLDFDSAEFRAVLAEFAEIGVPETLEELALLKLIEKLEARFLRGEYTGEYGLTLERLL-ELLERLLG 80 (229)
T ss_pred CceeEEEEecCCcccccchHHhHHHHHHHHHhchHHHhhhhHHHHHHHHHHHHHHcccchHHHhhhHHHHH-HHHHhhcc
Confidence 57899999999999998765544433333333322111110 00000000000000000000000 1111 11111112
Q ss_pred CCchHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCC
Q 023114 149 CSDSQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPN 227 (287)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~ 227 (287)
.......+.....+.. ..+++|++.++|..++.. ++++|+||+... ....++.+|+.++||.++++++.+..||+
T Consensus 81 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~ 156 (229)
T COG1011 81 DEDAELVEELLAALAK---LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPD 156 (229)
T ss_pred cccHHHHHHHHHHHHh---hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCC
Confidence 2223334444433222 234689999999999999 999999998777 79999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 228 PTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 228 ~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
|.+|..+++++|++|++++||||+..||+.+|+++||++|++.++
T Consensus 157 ~~~f~~~~~~~g~~p~~~l~VgD~~~~di~gA~~~G~~~vwi~~~ 201 (229)
T COG1011 157 PEIFEYALEKLGVPPEEALFVGDSLENDILGARALGMKTVWINRG 201 (229)
T ss_pred cHHHHHHHHHcCCCcceEEEECCChhhhhHHHHhcCcEEEEECCC
Confidence 999999999999999999999999999999999999999998764
No 35
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.94 E-value=1.8e-25 Score=206.45 Aligned_cols=183 Identities=17% Similarity=0.213 Sum_probs=131.9
Q ss_pred CCCeeEEEEeCCCCccCCCccHHHHHHHHHHHhCC------CCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHh
Q 023114 71 DITHKALLVDAAGTLLVPSQPMAQIYREIGEKYGV------AYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVS 144 (287)
Q Consensus 71 ~~~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (287)
++|+++|||||||||+|+...+.++|++++++++. ....+. +....+.+.. .+...+.+
T Consensus 238 ~~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~G~~~~-----------~~~~~l~~ 302 (459)
T PRK06698 238 NEMLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIDK----YREIMGVPLP-----------KVWEALLP 302 (459)
T ss_pred HHhhhheeEccCCceecchhHHHHHHHHHHHHHhhhcccCCCCCHHH----HHHHcCCChH-----------HHHHHHhh
Confidence 35689999999999999999999999999999841 112222 2222222211 11111111
Q ss_pred ccCCCCchHHHHHHHHHHhhcc--ccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccC
Q 023114 145 SSTGCSDSQYFEELYNYYTTEK--AWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEV 221 (287)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~ 221 (287)
.......++....+.+.+.... ....++||+.++|++|+++|++++|+||++.. +..+++.+|+.++|+.+++++++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v 382 (459)
T PRK06698 303 DHSLEIREQTDAYFLERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQI 382 (459)
T ss_pred hcchhHHHHHHHHHHHHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCC
Confidence 1110001111122222222211 12357999999999999999999999999988 79999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 222 EAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 222 ~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
. .||||+.|..++++++ |++|++|||+ .+|+.+|++||+.+|++..+
T Consensus 383 ~-~~~kP~~~~~al~~l~--~~~~v~VGDs-~~Di~aAk~AG~~~I~v~~~ 429 (459)
T PRK06698 383 N-SLNKSDLVKSILNKYD--IKEAAVVGDR-LSDINAAKDNGLIAIGCNFD 429 (459)
T ss_pred C-CCCCcHHHHHHHHhcC--cceEEEEeCC-HHHHHHHHHCCCeEEEEeCC
Confidence 4 4788899999999875 6899999998 99999999999999998664
No 36
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.93 E-value=1.4e-24 Score=179.20 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=96.4
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHh-cCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRA-LNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~-~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
++||+.++|++|+++|++++|+||++.. +...+.. .++..+|+.++++++++..||+|++|..+++++|++|++|++|
T Consensus 85 ~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~v 164 (199)
T PRK09456 85 LRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVFF 164 (199)
T ss_pred cCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeEEe
Confidence 6899999999999999999999999877 4555544 4788999999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHHHcCceEEEECCCCCCHHHHH
Q 023114 249 GDDRRNDVWGARDAGCDAWLWGSDVHSFKEVA 280 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~ 280 (287)
||+ ..|+.+|+++|+.++++.++..-.+.|.
T Consensus 165 gD~-~~di~aA~~aG~~~i~~~~~~~~~~~l~ 195 (199)
T PRK09456 165 DDN-ADNIEAANALGITSILVTDKQTIPDYFA 195 (199)
T ss_pred CCC-HHHHHHHHHcCCEEEEecCCccHHHHHH
Confidence 997 9999999999999999988544433333
No 37
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.93 E-value=1.5e-24 Score=216.21 Aligned_cols=191 Identities=23% Similarity=0.289 Sum_probs=144.7
Q ss_pred CeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccC--CCC
Q 023114 73 THKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSST--GCS 150 (287)
Q Consensus 73 ~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 150 (287)
++|+|||||||||+|+...+.+++.++++++|.+.+.+.+.. ..+.. ...+...+..... ...
T Consensus 74 ~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~it~e~~~~----~~G~~-----------~~~~~~~~~~~~~l~~~~ 138 (1057)
T PLN02919 74 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFVP----FMGTG-----------EANFLGGVASVKGVKGFD 138 (1057)
T ss_pred CCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCCCHHHHHH----HhCCC-----------HHHHHHHHHHhcCCCCCC
Confidence 469999999999999999999999999999998876554422 11111 1111121111111 111
Q ss_pred chHHHHHHHHHHhhcc---ccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCc-CccceEEecccCCCCC
Q 023114 151 DSQYFEELYNYYTTEK---AWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCD-HWFDAVAVSAEVEAEK 225 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~~---~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~-~~f~~~~~~~~~~~~K 225 (287)
..+..+++++.+.... ....++||+.++|++|+++|++++|+||.... +...++.+|+. .+|+.+++++++...|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~K 218 (1057)
T PLN02919 139 PDAAKKRFFEIYLEKYAKPNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLK 218 (1057)
T ss_pred HHHHHHHHHHHHHHHhhhcccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCC
Confidence 1222333333322211 11236899999999999999999999999877 78899999996 7899999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHH
Q 023114 226 PNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVA 280 (287)
Q Consensus 226 P~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~ 280 (287)
|+|++|..+++++|++|++|++|||+ ..|+++|+++||++|++..+. +.+++.
T Consensus 219 P~Pe~~~~a~~~lgv~p~e~v~IgDs-~~Di~AA~~aGm~~I~v~~~~-~~~~L~ 271 (1057)
T PLN02919 219 PAPDIFLAAAKILGVPTSECVVIEDA-LAGVQAARAAGMRCIAVTTTL-SEEILK 271 (1057)
T ss_pred CCHHHHHHHHHHcCcCcccEEEEcCC-HHHHHHHHHcCCEEEEECCCC-CHHHHh
Confidence 99999999999999999999999998 999999999999999998863 445554
No 38
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.93 E-value=3.6e-24 Score=176.48 Aligned_cols=180 Identities=19% Similarity=0.215 Sum_probs=124.2
Q ss_pred eEEEEeCCCCccCCCccHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhcc----CCC
Q 023114 75 KALLVDAAGTLLVPSQPMAQIYREIGEKYG-VAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSS----TGC 149 (287)
Q Consensus 75 k~vifD~DGTLid~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 149 (287)
++|||||||||+|+.+.+.++++++++++| ...+.+.+. .+. +.......... ....+...+.... ...
T Consensus 1 ~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~-~~~---g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 74 (197)
T TIGR01548 1 QALVLDMDGVMADVSQSYRRAIIDTVEHFGGVSVTHADID-HTK---LAGNANNDWQL--THRLVVDGLNSASSERVRDA 74 (197)
T ss_pred CceEEecCceEEechHHHHHHHHHHHHHHcCCCCCHHHHH-HHH---HccCccCchHH--HHHHHHHhhhcccchhccCC
Confidence 369999999999999999999999999998 445544432 221 11110000000 0000111111110 011
Q ss_pred CchHHHHHHHHHHhhc-c----------ccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEe
Q 023114 150 SDSQYFEELYNYYTTE-K----------AWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAV 217 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~-~----------~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~ 217 (287)
...+.+...+..+... . ....+.++..++|+.|++.|++++|+||++.. +..+++.+|+..+|+.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~ 154 (197)
T TIGR01548 75 PTLEAVTAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIW 154 (197)
T ss_pred ccHHHHHHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEe
Confidence 1122222222222221 0 01123456799999999999999999999888 7999999999999999999
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHc
Q 023114 218 SAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDA 262 (287)
Q Consensus 218 ~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~a 262 (287)
+++... ||+|+.|..+++++|++|++|++|||+ .+|+.+|+++
T Consensus 155 ~~~~~~-KP~p~~~~~~~~~~~~~~~~~i~vGD~-~~Di~aA~~a 197 (197)
T TIGR01548 155 MEDCPP-KPNPEPLILAAKALGVEACHAAMVGDT-VDDIITGRKA 197 (197)
T ss_pred ecCCCC-CcCHHHHHHHHHHhCcCcccEEEEeCC-HHHHHHHHhC
Confidence 999877 999999999999999999999999997 9999999875
No 39
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.92 E-value=1.1e-24 Score=177.52 Aligned_cols=173 Identities=19% Similarity=0.229 Sum_probs=124.0
Q ss_pred eEEEEeCCCCccCCCccHHHHHHHHHH-----HhCCCCCHHH-HHHHHHHHhcccCCCcccccccCChhHHHHHHhccCC
Q 023114 75 KALLVDAAGTLLVPSQPMAQIYREIGE-----KYGVAYSEAE-ILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTG 148 (287)
Q Consensus 75 k~vifD~DGTLid~~~~~~~~~~~~~~-----~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (287)
++|||||||||+|+...+..++++.+. ++|++..... +...+....+ ..+...+.. ..
T Consensus 1 ~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~g--------------~~~~~~~~~--~~ 64 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAGIFLQIDRNITEFVAARLKLSEEEARVLRKDYYREYG--------------TTLAGLMIL--HE 64 (184)
T ss_pred CeEEEeCCCCCCCCcccHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHc--------------hHHHHHHHh--hC
Confidence 469999999999999888888887654 5566432221 2211111111 111111111 01
Q ss_pred CCchHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCC----
Q 023114 149 CSDSQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEA---- 223 (287)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~---- 223 (287)
.. .+.+...+..... .....++||+.++|++|+ ++++|+||++.. +..+++.+|+.++|+.++++++.+.
T Consensus 65 ~~-~~~~~~~~~~~~~-~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~ 139 (184)
T TIGR01993 65 ID-ADEYLRYVHGRLP-YEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLL 139 (184)
T ss_pred CC-HHHHHHHHhccCC-HHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCC
Confidence 11 2222222222111 112347899999999997 589999999887 7999999999999999999998887
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEE
Q 023114 224 EKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLW 269 (287)
Q Consensus 224 ~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v 269 (287)
.||+|++|..+++++|++|++|++|||+ ..|+++|+++|+++|+|
T Consensus 140 ~KP~p~~~~~~~~~~~~~~~~~l~vgD~-~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 140 PKPSPQAYEKALREAGVDPERAIFFDDS-ARNIAAAKALGMKTVLV 184 (184)
T ss_pred CCCCHHHHHHHHHHhCCCccceEEEeCC-HHHHHHHHHcCCEEeeC
Confidence 5999999999999999999999999998 99999999999999875
No 40
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.92 E-value=1.5e-23 Score=172.62 Aligned_cols=184 Identities=21% Similarity=0.286 Sum_probs=144.9
Q ss_pred CeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhcc-CCCCc
Q 023114 73 THKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSS-TGCSD 151 (287)
Q Consensus 73 ~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 151 (287)
.+.+++|||||||+|++..+.+.+.+++.++|..++...... ..+. ........+.... ...+.
T Consensus 9 ~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~----~mG~-----------~~~eaa~~~~~~~~dp~s~ 73 (222)
T KOG2914|consen 9 KVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVK----SMGK-----------RTSEAARLFVKKLPDPVSR 73 (222)
T ss_pred ceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHH----HcCC-----------CHHHHHHHHHhhcCCCCCH
Confidence 467999999999999999999999999999998666654422 1111 1112222222222 23334
Q ss_pred hHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcC-CcCccceEEe--cccCCCCCCC
Q 023114 152 SQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALN-CDHWFDAVAV--SAEVEAEKPN 227 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~g-l~~~f~~~~~--~~~~~~~KP~ 227 (287)
+++..+..+..........++||+.+|++.|+.+|++++++|+.++. +...+..++ +...|+.++. ..++..+||+
T Consensus 74 ee~~~e~~~~~~~~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~ 153 (222)
T KOG2914|consen 74 EEFNKEEEEILDRLFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPD 153 (222)
T ss_pred HHHHHHHHHHHHHhccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCC
Confidence 55555555555555555568899999999999999999999999877 888888876 7777887777 6678889999
Q ss_pred HHHHHHHHHHcCCCC-CCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 228 PTIFLKACDLLGVKP-EDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 228 ~~~~~~~~~~l~~~p-~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
|++|..+++++|.+| ++|++++|+ ++++++|++|||++|++.+.
T Consensus 154 Pdi~l~A~~~l~~~~~~k~lVfeds-~~Gv~aa~aagm~vi~v~~~ 198 (222)
T KOG2914|consen 154 PDIYLKAAKRLGVPPPSKCLVFEDS-PVGVQAAKAAGMQVVGVATP 198 (222)
T ss_pred chHHHHHHHhcCCCCccceEEECCC-HHHHHHHHhcCCeEEEecCC
Confidence 999999999999988 999999998 99999999999999999883
No 41
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.92 E-value=1.8e-23 Score=169.91 Aligned_cols=100 Identities=32% Similarity=0.463 Sum_probs=91.6
Q ss_pred ccCCccHHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 169 HLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 169 ~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
..++||+.++|+.|++.|++++|+||++.....++.++|+..+|+.++++++.+..||+|+.|..+++++|++|++|++|
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v 163 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDHAVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLFV 163 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEEE
Confidence 35789999999999999999999999887664444559999999999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHHHcCceEEEE
Q 023114 249 GDDRRNDVWGARDAGCDAWLW 269 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~~i~v 269 (287)
||+ ..|+.+|+++|+.+|++
T Consensus 164 gD~-~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 164 DDS-PAGIEAAKAAGMHTVLV 183 (183)
T ss_pred cCC-HHHHHHHHHcCCEEEeC
Confidence 998 99999999999999874
No 42
>PLN02811 hydrolase
Probab=99.91 E-value=2.4e-23 Score=174.53 Aligned_cols=180 Identities=18% Similarity=0.178 Sum_probs=128.9
Q ss_pred CCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhc-cCCC-CchHHHHHH
Q 023114 81 AAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSS-STGC-SDSQYFEEL 158 (287)
Q Consensus 81 ~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~ 158 (287)
|||||+|+...+..+|.++++++|++.+.+.. ....+... ......+.+. .... ...+.+...
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~----~~~~G~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGKTFDWSLK----AKMMGKKA-----------IEAARIFVEESGLSDSLSPEDFLVE 65 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCCCCCHHHH----HHccCCCH-----------HHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 79999999999999999999999987654321 11111110 1111112111 1110 111112112
Q ss_pred HHHHhh-ccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hH-HHHHhcCCcCccceEEecc--cCCCCCCCHHHHHH
Q 023114 159 YNYYTT-EKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LR-PVLRALNCDHWFDAVAVSA--EVEAEKPNPTIFLK 233 (287)
Q Consensus 159 ~~~~~~-~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~-~~l~~~gl~~~f~~~~~~~--~~~~~KP~~~~~~~ 233 (287)
...+.. ......++||+.++|+.|+++|++++|+||.... +. ..++..++.++|+.+++++ +++..||+|++|..
T Consensus 66 ~~~~~~~~~~~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~ 145 (220)
T PLN02811 66 REAMLQDLFPTSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLA 145 (220)
T ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHH
Confidence 222211 1122457899999999999999999999998865 53 3444457889999999999 88889999999999
Q ss_pred HHHHcC---CCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCH
Q 023114 234 ACDLLG---VKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSF 276 (287)
Q Consensus 234 ~~~~l~---~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~ 276 (287)
++++++ ++|++|++|||+ ..|+++|+++|+++|++.++..+.
T Consensus 146 a~~~~~~~~~~~~~~v~IgDs-~~di~aA~~aG~~~i~v~~~~~~~ 190 (220)
T PLN02811 146 AARRFEDGPVDPGKVLVFEDA-PSGVEAAKNAGMSVVMVPDPRLDK 190 (220)
T ss_pred HHHHhCCCCCCccceEEEecc-HhhHHHHHHCCCeEEEEeCCCCcH
Confidence 999997 999999999998 999999999999999998765443
No 43
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.91 E-value=4.9e-23 Score=163.02 Aligned_cols=153 Identities=33% Similarity=0.533 Sum_probs=117.1
Q ss_pred EEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCCchHHH
Q 023114 76 ALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCSDSQYF 155 (287)
Q Consensus 76 ~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (287)
+|+||+||||+|+...+..+|.++++++|. +.+.+ ....+. ....+.... ..+
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~--~~~~~----~~~~g~-----------~~~~~~~~~----------~~~ 53 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGE--DFQAL----KALRGL-----------AEELLYRIA----------TSF 53 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcc--cHHHH----HHHHcc-----------ChHHHHHHH----------HHH
Confidence 489999999999988999999999999985 22222 211111 001111111 011
Q ss_pred HHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHH
Q 023114 156 EELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKA 234 (287)
Q Consensus 156 ~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~ 234 (287)
+++.. +.. ....+||+.++|+.|+++|++++|+||++.. +...++.+ +..+|+.++++++.. .||+|++|..+
T Consensus 54 ~~~~~-~~~---~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~ 127 (154)
T TIGR01549 54 EELLG-YDA---EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDEFG-AKPEPEIFLAA 127 (154)
T ss_pred HHHhC-cch---hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCCCC-CCcCHHHHHHH
Confidence 11211 111 2235799999999999999999999999888 67788887 888999999999888 99999999999
Q ss_pred HHHcCCCCCCEEEEcCCchhhHHHHHHcC
Q 023114 235 CDLLGVKPEDAVHVGDDRRNDVWGARDAG 263 (287)
Q Consensus 235 ~~~l~~~p~~~l~VGDs~~~Di~~a~~aG 263 (287)
++++|++| +|++|||+ ..|+.+|+++|
T Consensus 128 ~~~~~~~~-~~l~iGDs-~~Di~aa~~aG 154 (154)
T TIGR01549 128 LESLGLPP-EVLHVGDN-LNDIEGARNAG 154 (154)
T ss_pred HHHcCCCC-CEEEEeCC-HHHHHHHHHcc
Confidence 99999999 99999998 99999999997
No 44
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.90 E-value=3.1e-23 Score=181.72 Aligned_cols=191 Identities=16% Similarity=0.098 Sum_probs=136.5
Q ss_pred cccccccchHHHHhhhcCCCCeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccc
Q 023114 53 LGVFGLKDYEDYRRSLYGDITHKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYV 132 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (287)
.+++.+.+.....+. .+++|+|||||||+. .++++++++..|.......+..+ .+
T Consensus 94 ~~~d~~~~~~~~~~~-----~~~LvvfDmDGTLI~-----~e~i~eia~~~g~~~~v~~it~~---------------~m 148 (322)
T PRK11133 94 LGLDVAPLGKIPHLR-----TPGLLVMDMDSTAIQ-----IECIDEIAKLAGTGEEVAEVTER---------------AM 148 (322)
T ss_pred cCCcEEEecCccccc-----CCCEEEEECCCCCcc-----hHHHHHHHHHhCCchHHHHHHHH---------------HH
Confidence 345555554433322 459999999999995 78999999999887666555332 23
Q ss_pred cCChhHHHHHHhccCCCC--chHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCc
Q 023114 133 NDGRPFWQFIVSSSTGCS--DSQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCD 209 (287)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~ 209 (287)
.++.+|.+.+..+..... ..+.++.+. .. .+++||+.+++++|++.|++++|+|+++.. ...+++.+|++
T Consensus 149 ~Geldf~esl~~rv~~l~g~~~~il~~v~----~~---l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld 221 (322)
T PRK11133 149 RGELDFEASLRQRVATLKGADANILQQVR----EN---LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLD 221 (322)
T ss_pred cCCcCHHHHHHHHHHHhCCCCHHHHHHHH----Hh---CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCC
Confidence 455666666555433221 223333222 11 347899999999999999999999999987 58888889987
Q ss_pred CccceEEe-------cc---cCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHH
Q 023114 210 HWFDAVAV-------SA---EVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKE 278 (287)
Q Consensus 210 ~~f~~~~~-------~~---~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~e 278 (287)
..+.+.+. +. +...+|||++.+..+++++|+++++|++|||+ .||+.|++.||+..++ +..+.+++
T Consensus 222 ~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~lgi~~~qtIaVGDg-~NDl~m~~~AGlgiA~--nAkp~Vk~ 297 (322)
T PRK11133 222 AAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEYEIPLAQTVAIGDG-ANDLPMIKAAGLGIAY--HAKPKVNE 297 (322)
T ss_pred eEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHHcCCChhhEEEEECC-HHHHHHHHHCCCeEEe--CCCHHHHh
Confidence 65543322 21 23347899999999999999999999999997 9999999999987665 43344433
No 45
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.90 E-value=1.6e-22 Score=169.34 Aligned_cols=180 Identities=21% Similarity=0.217 Sum_probs=123.3
Q ss_pred CeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccC--CCC
Q 023114 73 THKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSST--GCS 150 (287)
Q Consensus 73 ~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 150 (287)
++|+++|||||||+++ +.+.++++.+|.+.....+...+. .+...+......... ...
T Consensus 13 ~~k~iiFD~DGTL~~~-----~~~~~l~~~~g~~~~~~~~~~~~~---------------~g~~~~~~~~~~~~~~~~~~ 72 (219)
T TIGR00338 13 SKKLVVFDMDSTLINA-----ETIDEIAKIAGVEEEVSEITERAM---------------RGELDFKASLRERVALLKGL 72 (219)
T ss_pred cCCEEEEeCcccCCCc-----hHHHHHHHHhCCHHHHHHHHHHHH---------------cCCCCHHHHHHHHHHHhCCC
Confidence 4689999999999995 456778888887543333322211 122222222222111 111
Q ss_pred chHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEeccc---------
Q 023114 151 DSQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAE--------- 220 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~--------- 220 (287)
..+.++.. ... ..++||+.++++.|+++|++++|+||+... +..+++.+|+..+|++.+..++
T Consensus 73 ~~~~~~~~----~~~---~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~ 145 (219)
T TIGR00338 73 PVELLKEV----REN---LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEG 145 (219)
T ss_pred CHHHHHHH----Hhc---CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEecC
Confidence 22222222 222 237899999999999999999999999877 7999999999988865433221
Q ss_pred -CCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 221 -VEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 221 -~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
...++||+.+|..++++++++|++|++|||+ .+|+.+|+.+|+..+ ++. .+.+.+.+++
T Consensus 146 ~~~~~~~k~~~~~~~~~~~~~~~~~~i~iGDs-~~Di~aa~~ag~~i~-~~~-~~~~~~~a~~ 205 (219)
T TIGR00338 146 PIVDASYKGKTLLILLRKEGISPENTVAVGDG-ANDLSMIKAAGLGIA-FNA-KPKLQQKADI 205 (219)
T ss_pred cccCCcccHHHHHHHHHHcCCCHHHEEEEECC-HHHHHHHHhCCCeEE-eCC-CHHHHHhchh
Confidence 2235789999999999999999999999998 999999999999854 443 3444444443
No 46
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.90 E-value=1.8e-23 Score=168.96 Aligned_cols=171 Identities=19% Similarity=0.249 Sum_probs=116.4
Q ss_pred EEEEeCCCCccCCCccHHHHHHHHHHHhCCC---CCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCCch
Q 023114 76 ALLVDAAGTLLVPSQPMAQIYREIGEKYGVA---YSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCSDS 152 (287)
Q Consensus 76 ~vifD~DGTLid~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (287)
+|+||+||||+|+...+.+++.+++.+.+.. .....+...+.......+.. .... ....+.......... ...
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~g~~-~~~ 76 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLAAIAPEGGAFSDLWRAKQQEYSWRRSLMGDRRA-FPED--TVRALRYIADRLGLD-AEP 76 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCcCC-HHHH--HHHHHHHHHHHcCCC-CCH
Confidence 4899999999999988888888888775421 11122222222111100000 0000 000122222222222 122
Q ss_pred HHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHH
Q 023114 153 QYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIF 231 (287)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~ 231 (287)
+..+.+...+. ...++||+.++|+ +++|+||++.. +..+++++|+..+|+.++++++++..||+|++|
T Consensus 77 ~~~~~~~~~~~----~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f 145 (175)
T TIGR01493 77 KYGERLRDAYK----NLPPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVY 145 (175)
T ss_pred HHHHHHHHHHh----cCCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHH
Confidence 33333333332 2347899999998 48999999888 788999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCEEEEcCCchhhHHHHHHc
Q 023114 232 LKACDLLGVKPEDAVHVGDDRRNDVWGARDA 262 (287)
Q Consensus 232 ~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~a 262 (287)
..+++++|++|++|++|||+ ..|+.+|+++
T Consensus 146 ~~~~~~~~~~p~~~l~vgD~-~~Di~~A~~~ 175 (175)
T TIGR01493 146 ELVFDTVGLPPDRVLMVAAH-QWDLIGARKF 175 (175)
T ss_pred HHHHHHHCCCHHHeEeEecC-hhhHHHHhcC
Confidence 99999999999999999998 9999999864
No 47
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.89 E-value=3.4e-22 Score=164.69 Aligned_cols=167 Identities=17% Similarity=0.239 Sum_probs=113.4
Q ss_pred CeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCCch
Q 023114 73 THKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCSDS 152 (287)
Q Consensus 73 ~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (287)
|+|+|||||||||+|+ ..++..+++++|++. +++...+.. ..... +...+ .. +.
T Consensus 1 m~k~viFDlDGTLiD~----~~~~~~~~~~~g~~~--~~~~~~~g~----~~~~~----------~~~~~-----~~-~~ 54 (197)
T PHA02597 1 MKPTILTDVDGVLLSW----QSGLPYFAQKYNIPT--DHILKMIQD----ERFRD----------PGELF-----GC-DQ 54 (197)
T ss_pred CCcEEEEecCCceEch----hhccHHHHHhcCCCH--HHHHHHHhH----hhhcC----------HHHHh-----cc-cH
Confidence 4699999999999994 456677888888753 333222111 00000 00000 01 11
Q ss_pred HHHHHHHHHHhhc--cccccCCccHHHHHHHHHHcCCeEEEEeCCCcch-HHHHHhcCCcC----ccceEEecccCCCCC
Q 023114 153 QYFEELYNYYTTE--KAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRL-RPVLRALNCDH----WFDAVAVSAEVEAEK 225 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~~-~~~l~~~gl~~----~f~~~~~~~~~~~~K 225 (287)
+..+++++.+... .....++||+.++|+.|++. ++++++||.+... ...++.+++.. +|+.++++++ .|
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~---~~ 130 (197)
T PHA02597 55 ELAKKLIEKYNNSDFIRYLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGH---DE 130 (197)
T ss_pred HHHHHHhhhhhHHHHHHhccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEecc---Cc
Confidence 1222223222211 11234799999999999987 5788889987774 44667777754 4567777766 36
Q ss_pred CCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHc--CceEEEECCC
Q 023114 226 PNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDA--GCDAWLWGSD 272 (287)
Q Consensus 226 P~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~a--G~~~i~v~~~ 272 (287)
|||++|..+++++| |+++++|||+ .+|+.+|++| |+++|++..+
T Consensus 131 ~kp~~~~~a~~~~~--~~~~v~vgDs-~~di~aA~~a~~Gi~~i~~~~~ 176 (197)
T PHA02597 131 SKEKLFIKAKEKYG--DRVVCFVDDL-AHNLDAAHEALSQLPVIHMLRG 176 (197)
T ss_pred ccHHHHHHHHHHhC--CCcEEEeCCC-HHHHHHHHHHHcCCcEEEecch
Confidence 78999999999999 8889999998 9999999999 9999999775
No 48
>PLN02954 phosphoserine phosphatase
Probab=99.88 E-value=4.2e-21 Score=161.31 Aligned_cols=169 Identities=18% Similarity=0.194 Sum_probs=118.8
Q ss_pred CCeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCC-C
Q 023114 72 ITHKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGC-S 150 (287)
Q Consensus 72 ~~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 150 (287)
|++|+|+|||||||+++ +.+..+++.+|.+....++...|. .+...+.+.+....... .
T Consensus 10 ~~~k~viFDfDGTL~~~-----~~~~~~~~~~g~~~~~~~~~~~~~---------------~g~~~~~~~~~~~~~~~~~ 69 (224)
T PLN02954 10 RSADAVCFDVDSTVCVD-----EGIDELAEFCGAGEAVAEWTAKAM---------------GGSVPFEEALAARLSLFKP 69 (224)
T ss_pred ccCCEEEEeCCCcccch-----HHHHHHHHHcCChHHHHHHHHHHH---------------CCCCCHHHHHHHHHHHcCC
Confidence 46799999999999994 667889999987655555544332 22333333333221111 1
Q ss_pred chHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCc--CccceEEeccc-------
Q 023114 151 DSQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCD--HWFDAVAVSAE------- 220 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~--~~f~~~~~~~~------- 220 (287)
..+.+.+++..+ ...++||+.++++.|+++|++++|+|++... +..+++.+|+. .+|++.+..++
T Consensus 70 ~~~~~~~~~~~~-----~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~ 144 (224)
T PLN02954 70 SLSQVEEFLEKR-----PPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGF 144 (224)
T ss_pred CHHHHHHHHHHc-----cCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECc
Confidence 223333333321 1237899999999999999999999999988 79999999996 45654322211
Q ss_pred -----CCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEE
Q 023114 221 -----VEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWL 268 (287)
Q Consensus 221 -----~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~ 268 (287)
....+|||+.+..++++++. +++++|||+ .+|+.+++++|+..+.
T Consensus 145 ~~~~~~~~~~~K~~~i~~~~~~~~~--~~~i~iGDs-~~Di~aa~~~~~~~~~ 194 (224)
T PLN02954 145 DENEPTSRSGGKAEAVQHIKKKHGY--KTMVMIGDG-ATDLEARKPGGADLFI 194 (224)
T ss_pred cCCCcccCCccHHHHHHHHHHHcCC--CceEEEeCC-HHHHHhhhcCCCCEEE
Confidence 12357789999999999885 689999997 9999999999988755
No 49
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.87 E-value=3.3e-21 Score=159.02 Aligned_cols=101 Identities=23% Similarity=0.144 Sum_probs=86.8
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCC----------CHHHHHHHHHHc
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKP----------NPTIFLKACDLL 238 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP----------~~~~~~~~~~~l 238 (287)
.++||+.++|+.|+++|++++|+||+... +..+++.+|+..+|+..+..++.+..+| |+..+..+++++
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~~ 159 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKREL 159 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHHh
Confidence 37899999999999999999999999888 7999999999988887777765544333 346888999999
Q ss_pred CCCCCCEEEEcCCchhhHHHHHHcCceEEEECC
Q 023114 239 GVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGS 271 (287)
Q Consensus 239 ~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~ 271 (287)
+++|+++++|||| .+|+.+++.||+..++.++
T Consensus 160 ~~~~~~~i~iGDs-~~D~~~a~~ag~~~a~~~~ 191 (201)
T TIGR01491 160 NPSLTETVAVGDS-KNDLPMFEVADISISLGDE 191 (201)
T ss_pred CCCHHHEEEEcCC-HhHHHHHHhcCCeEEECCC
Confidence 9999999999998 9999999999997766444
No 50
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.86 E-value=1.3e-21 Score=153.64 Aligned_cols=100 Identities=29% Similarity=0.384 Sum_probs=84.5
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCc---------------c-hHHHHHhcCCcCccceEEe----cccCCCCCCCHHH
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDT---------------R-LRPVLRALNCDHWFDAVAV----SAEVEAEKPNPTI 230 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~---------------~-~~~~l~~~gl~~~f~~~~~----~~~~~~~KP~~~~ 230 (287)
++||+.++|+.|+++|++++|+||.+. . +...++.+|+... ..++. +++....||+|++
T Consensus 28 ~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~~~~~KP~~~~ 106 (147)
T TIGR01656 28 LRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVD-GVLFCPHHPADNCSCRKPKPGL 106 (147)
T ss_pred EcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCcee-EEEECCCCCCCCCCCCCCCHHH
Confidence 579999999999999999999999873 2 4667788888621 12222 3455668999999
Q ss_pred HHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 231 FLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 231 ~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
|..++++++++|++|++|||+ ..|+++|+++|++++++.++
T Consensus 107 ~~~~~~~~~~~~~e~i~IGDs-~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 107 ILEALKRLGVDASRSLVVGDR-LRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred HHHHHHHcCCChHHEEEEcCC-HHHHHHHHHCCCCEEEecCC
Confidence 999999999999999999998 99999999999999999864
No 51
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.85 E-value=1.2e-20 Score=153.28 Aligned_cols=100 Identities=20% Similarity=0.287 Sum_probs=85.4
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCc---------------c-hHHHHHhcCCcCccceEEec-----ccCCCCCCCHH
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDT---------------R-LRPVLRALNCDHWFDAVAVS-----AEVEAEKPNPT 229 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~---------------~-~~~~l~~~gl~~~f~~~~~~-----~~~~~~KP~~~ 229 (287)
++||+.++|++|+++|++++|+||.+. . +...++.+|+ .|+.++.+ ++....||+|.
T Consensus 30 ~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~f~~i~~~~~~~~~~~~~~KP~p~ 107 (181)
T PRK08942 30 PIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGG--RLDGIYYCPHHPEDGCDCRKPKPG 107 (181)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCC--ccceEEECCCCCCCCCcCCCCCHH
Confidence 679999999999999999999999863 1 3345666776 37776654 34577999999
Q ss_pred HHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCC
Q 023114 230 IFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDV 273 (287)
Q Consensus 230 ~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~ 273 (287)
+|..+++++|++|++|++|||+ .+|+.+|+++|+.+|++..+.
T Consensus 108 ~~~~~~~~l~~~~~~~~~VgDs-~~Di~~A~~aG~~~i~v~~g~ 150 (181)
T PRK08942 108 MLLSIAERLNIDLAGSPMVGDS-LRDLQAAAAAGVTPVLVRTGK 150 (181)
T ss_pred HHHHHHHHcCCChhhEEEEeCC-HHHHHHHHHCCCeEEEEcCCC
Confidence 9999999999999999999998 999999999999999987754
No 52
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.85 E-value=2.1e-20 Score=148.39 Aligned_cols=110 Identities=17% Similarity=0.284 Sum_probs=98.0
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCC---------------cc-hHHHHHhcCCcCccceEEe-----cccCCCCCCCHH
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFD---------------TR-LRPVLRALNCDHWFDAVAV-----SAEVEAEKPNPT 229 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~---------------~~-~~~~l~~~gl~~~f~~~~~-----~~~~~~~KP~~~ 229 (287)
++||+.++|++|+++|++++|+||.+ .. +..+++.+|+. |+.++. +++....||++.
T Consensus 30 ~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--fd~ii~~~~~~~~~~~~~KP~~~ 107 (161)
T TIGR01261 30 FEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--FDDVLICPHFPDDNCDCRKPKIK 107 (161)
T ss_pred ECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--eeEEEECCCCCCCCCCCCCCCHH
Confidence 68999999999999999999999963 22 57778999997 776654 478888999999
Q ss_pred HHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 230 IFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 230 ~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
+|..++++++++|++|++|||+ .+|+.+|+++|+.++++.++.-+|+-+++-+
T Consensus 108 ~~~~~~~~~~~~~~e~l~IGD~-~~Di~~A~~aGi~~i~~~~~~~~~~~~~~~~ 160 (161)
T TIGR01261 108 LLEPYLKKNLIDKARSYVIGDR-ETDMQLAENLGIRGIQYDEEELNWDMIAEEL 160 (161)
T ss_pred HHHHHHHHcCCCHHHeEEEeCC-HHHHHHHHHCCCeEEEEChhhcCHHHHHHHh
Confidence 9999999999999999999997 9999999999999999999999998877643
No 53
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.84 E-value=1.3e-19 Score=150.70 Aligned_cols=101 Identities=20% Similarity=0.224 Sum_probs=87.8
Q ss_pred ccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhc---CCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCC
Q 023114 169 HLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRAL---NCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPED 244 (287)
Q Consensus 169 ~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~---gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~ 244 (287)
..++||+.++|++|+++|++++|+||++.. ....++.. ++.++|+.++... ...||+|+.|..+++++|++|++
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd~~--~g~KP~p~~y~~i~~~lgv~p~e 171 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFDTT--VGLKTEAQSYVKIAGQLGSPPRE 171 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEEeC--cccCCCHHHHHHHHHHhCcChhH
Confidence 468999999999999999999999999877 56666664 6777777766432 33799999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 245 AVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 245 ~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
|++|||+ ..|+.+|++||+.++++.++
T Consensus 172 ~lfVgDs-~~Di~AA~~AG~~ti~v~r~ 198 (220)
T TIGR01691 172 ILFLSDI-INELDAARKAGLHTGQLVRP 198 (220)
T ss_pred EEEEeCC-HHHHHHHHHcCCEEEEEECC
Confidence 9999998 99999999999999988764
No 54
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.84 E-value=3.3e-20 Score=143.03 Aligned_cols=95 Identities=29% Similarity=0.482 Sum_probs=83.5
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCC--------cc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHc-CC
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFD--------TR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLL-GV 240 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~--------~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l-~~ 240 (287)
++||+.++|++|++.|++++|+||+. .. +...++.+|+. ++..+.+. ...||+|++|..+++++ ++
T Consensus 26 ~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~--~~~KP~~~~~~~~~~~~~~~ 101 (132)
T TIGR01662 26 LYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--IDVLYACP--HCRKPKPGMFLEALKRFNEI 101 (132)
T ss_pred eCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC--EEEEEECC--CCCCCChHHHHHHHHHcCCC
Confidence 67999999999999999999999987 55 78889999986 33333333 57899999999999999 59
Q ss_pred CCCCEEEEcC-CchhhHHHHHHcCceEEEEC
Q 023114 241 KPEDAVHVGD-DRRNDVWGARDAGCDAWLWG 270 (287)
Q Consensus 241 ~p~~~l~VGD-s~~~Di~~a~~aG~~~i~v~ 270 (287)
+|+++++||| + .+|+.+|+++|+.+|++.
T Consensus 102 ~~~~~v~IGD~~-~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 102 DPEESVYVGDQD-LTDLQAAKRAGLAFILVA 131 (132)
T ss_pred ChhheEEEcCCC-cccHHHHHHCCCeEEEee
Confidence 9999999999 6 999999999999999975
No 55
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.84 E-value=4.2e-20 Score=149.46 Aligned_cols=100 Identities=20% Similarity=0.270 Sum_probs=84.4
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCc---------------c-hHHHHHhcCCcCccceEEec-----------ccCCC
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDT---------------R-LRPVLRALNCDHWFDAVAVS-----------AEVEA 223 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~---------------~-~~~~l~~~gl~~~f~~~~~~-----------~~~~~ 223 (287)
++||+.++|++|+++|++++|+||.+. . +...+..+++. |+.++.+ ++...
T Consensus 27 ~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~ 104 (176)
T TIGR00213 27 FIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD--LDGIYYCPHHPEGVEEFRQVCDC 104 (176)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC--ccEEEECCCCCcccccccCCCCC
Confidence 679999999999999999999999874 1 23566666666 6666543 24556
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceE-EEECCCC
Q 023114 224 EKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDA-WLWGSDV 273 (287)
Q Consensus 224 ~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~-i~v~~~~ 273 (287)
.||+|++|..+++++|++|++|++|||+ .+|+++|+++|+.+ +++..+.
T Consensus 105 ~KP~p~~~~~a~~~~~~~~~~~v~VGDs-~~Di~aA~~aG~~~~i~v~~g~ 154 (176)
T TIGR00213 105 RKPKPGMLLQARKELHIDMAQSYMVGDK-LEDMQAGVAAKVKTNVLVRTGK 154 (176)
T ss_pred CCCCHHHHHHHHHHcCcChhhEEEEcCC-HHHHHHHHHCCCcEEEEEecCC
Confidence 8999999999999999999999999998 99999999999998 7877653
No 56
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.84 E-value=6.6e-20 Score=151.81 Aligned_cols=172 Identities=21% Similarity=0.208 Sum_probs=136.5
Q ss_pred CCeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCC-
Q 023114 72 ITHKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCS- 150 (287)
Q Consensus 72 ~~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 150 (287)
++.++++|||||||++ .+++..+....|.......+.. +.+.+...|...+..+.....
T Consensus 3 ~~~~L~vFD~D~TLi~-----~~~~~~~~~~~g~~~~v~~~t~---------------~~~~~~~~~~~~~~~~v~~l~g 62 (212)
T COG0560 3 RMKKLAVFDLDGTLIN-----AELIDELARGAGVGEEVLAITE---------------RAMRGELDFEESLRLRVALLKG 62 (212)
T ss_pred CccceEEEecccchhh-----HHHHHHHHHHhCCHHHHHHHHH---------------HHhcccccHHHHHHHHHHHhCC
Confidence 3558999999999998 7889999999988766655533 334445566666655544332
Q ss_pred -chHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccC---C---
Q 023114 151 -DSQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEV---E--- 222 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~---~--- 222 (287)
..+.++++.+++ ..++||+.++++.+++.|++++|+|+++.. ++++.+.+|++..+.+.+..++. +
T Consensus 63 ~~~~~v~~~~~~~------~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~ 136 (212)
T COG0560 63 LPVEVLEEVREEF------LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVV 136 (212)
T ss_pred CCHHHHHHHHHhc------CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceee
Confidence 456666666665 337899999999999999999999999998 69999999999999888887762 1
Q ss_pred ----CCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECC
Q 023114 223 ----AEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGS 271 (287)
Q Consensus 223 ----~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~ 271 (287)
.++-|...+...++++|++++++++|||| .||+.|.+.+|.. +.++.
T Consensus 137 g~~~~~~~K~~~l~~~~~~~g~~~~~~~a~gDs-~nDlpml~~ag~~-ia~n~ 187 (212)
T COG0560 137 GPICDGEGKAKALRELAAELGIPLEETVAYGDS-ANDLPMLEAAGLP-IAVNP 187 (212)
T ss_pred eeecCcchHHHHHHHHHHHcCCCHHHeEEEcCc-hhhHHHHHhCCCC-eEeCc
Confidence 13557888999999999999999999997 9999999999966 44455
No 57
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.83 E-value=2e-20 Score=149.39 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=92.8
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCC-Ccc-hHHHHHhcCCc---------CccceEEecccCCCCCCCHHHHHHHHHHc
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNF-DTR-LRPVLRALNCD---------HWFDAVAVSAEVEAEKPNPTIFLKACDLL 238 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~-~~~-~~~~l~~~gl~---------~~f~~~~~~~~~~~~KP~~~~~~~~~~~l 238 (287)
.++||+.++|+.|+++|++++|+||. ... +..+++.+|+. ++|+.++++++....||.+.++..+.+.+
T Consensus 45 ~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~ 124 (174)
T TIGR01685 45 TLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVD 124 (174)
T ss_pred EEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcc
Confidence 37899999999999999999999987 555 68899999998 99999999998777788888888888887
Q ss_pred --CCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 239 --GVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 239 --~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
|++|++|+||||+ ..|+.+|+++|+.++++..+
T Consensus 125 ~~gl~p~e~l~VgDs-~~di~aA~~aGi~~i~v~~g 159 (174)
T TIGR01685 125 PSVLKPAQILFFDDR-TDNVREVWGYGVTSCYCPSG 159 (174)
T ss_pred cCCCCHHHeEEEcCh-hHhHHHHHHhCCEEEEcCCC
Confidence 8999999999998 99999999999999999775
No 58
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.83 E-value=7e-20 Score=153.36 Aligned_cols=168 Identities=13% Similarity=0.101 Sum_probs=113.6
Q ss_pred CCeeEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCCc
Q 023114 72 ITHKALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCSD 151 (287)
Q Consensus 72 ~~~k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (287)
||-++|+||+||||++....+ .++++++. ...+++.+.+ +.+...+.+.+.........
T Consensus 1 ~~~~~vifDfDgTi~~~d~~~-----~~~~~~~~-~~~~~i~~~~---------------~~g~~~~~~~~~~~~~~l~~ 59 (219)
T PRK09552 1 MMSIQIFCDFDGTITNNDNII-----AIMKKFAP-PEWEELKDDI---------------LSQELSIQEGVGQMFQLLPS 59 (219)
T ss_pred CCCcEEEEcCCCCCCcchhhH-----HHHHHhCH-HHHHHHHHHH---------------HhCCcCHHHHHHHHHHhCCC
Confidence 445699999999999866432 34455543 2233443322 23444444444433332221
Q ss_pred hHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcC--cc--ceEEecccCCCCCC
Q 023114 152 SQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDH--WF--DAVAVSAEVEAEKP 226 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~--~f--~~~~~~~~~~~~KP 226 (287)
. ..+++.+.+... ..++||+.++++.|+++|++++|+||+... +..+++.+ +.. .+ +..+.++.....||
T Consensus 60 ~-~~~~~~~~~~~~---~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp 134 (219)
T PRK09552 60 N-LKEEIIQFLLET---AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWP 134 (219)
T ss_pred C-chHHHHHHHHhC---CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEecc
Confidence 1 123333333322 237899999999999999999999999987 78899887 643 33 33455566666788
Q ss_pred CHHH----------HHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceE
Q 023114 227 NPTI----------FLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDA 266 (287)
Q Consensus 227 ~~~~----------~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~ 266 (287)
+|.. ...++++++.++++|++|||+ .+|+.+|+.||+..
T Consensus 135 ~p~~~~~~~~~~~~K~~~l~~~~~~~~~~i~iGDs-~~Di~aa~~Ag~~~ 183 (219)
T PRK09552 135 HPCDEHCQNHCGCCKPSLIRKLSDTNDFHIVIGDS-ITDLEAAKQADKVF 183 (219)
T ss_pred CCccccccccCCCchHHHHHHhccCCCCEEEEeCC-HHHHHHHHHCCcce
Confidence 7764 357889999999999999997 99999999999843
No 59
>PRK06769 hypothetical protein; Validated
Probab=99.82 E-value=1.1e-19 Score=146.33 Aligned_cols=102 Identities=16% Similarity=0.234 Sum_probs=86.0
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc---------hHHHHHhcCCcCccceEE-ecccCCCCCCCHHHHHHHHHHcCC
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR---------LRPVLRALNCDHWFDAVA-VSAEVEAEKPNPTIFLKACDLLGV 240 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~---------~~~~l~~~gl~~~f~~~~-~~~~~~~~KP~~~~~~~~~~~l~~ 240 (287)
++||+.++|++|+++|++++|+||.+.. +...++.+|+..+|.... .+++....||+|++|..+++++++
T Consensus 29 ~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~ 108 (173)
T PRK06769 29 LFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEKHGL 108 (173)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 6799999999999999999999997631 344466777766554333 355667899999999999999999
Q ss_pred CCCCEEEEcCCchhhHHHHHHcCceEEEECCCC
Q 023114 241 KPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDV 273 (287)
Q Consensus 241 ~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~ 273 (287)
+|++|++|||+ .+|+.+|+++|+.+|++..+.
T Consensus 109 ~p~~~i~IGD~-~~Di~aA~~aGi~~i~v~~g~ 140 (173)
T PRK06769 109 DLTQCAVIGDR-WTDIVAAAKVNATTILVRTGA 140 (173)
T ss_pred CHHHeEEEcCC-HHHHHHHHHCCCeEEEEecCC
Confidence 99999999998 999999999999999997753
No 60
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.82 E-value=1.6e-19 Score=144.16 Aligned_cols=95 Identities=18% Similarity=0.223 Sum_probs=83.4
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-------------hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHH
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-------------LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDL 237 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-------------~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~ 237 (287)
++||+.++|+.|+++|++++|+||.+.. +..+++.+|+. ++.++++++....||+|++|..++++
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~--~~~ii~~~~~~~~KP~p~~~~~~~~~ 120 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP--IQVLAATHAGLYRKPMTGMWEYLQSQ 120 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC--EEEEEecCCCCCCCCccHHHHHHHHH
Confidence 6899999999999999999999997752 46788999985 36667777666789999999999999
Q ss_pred cC--CCCCCEEEEcCCch--------hhHHHHHHcCceEEE
Q 023114 238 LG--VKPEDAVHVGDDRR--------NDVWGARDAGCDAWL 268 (287)
Q Consensus 238 l~--~~p~~~l~VGDs~~--------~Di~~a~~aG~~~i~ 268 (287)
+| ++|+++++|||+ . +|+++|+++|+.+++
T Consensus 121 ~~~~~~~~~~v~VGD~-~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 121 YNSPIKMTRSFYVGDA-AGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred cCCCCCchhcEEEECC-CCCCCCCchhHHHHHHHCCCCcCC
Confidence 99 999999999997 5 699999999999864
No 61
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.81 E-value=2.3e-19 Score=148.62 Aligned_cols=98 Identities=18% Similarity=0.154 Sum_probs=78.6
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccC----CCCCCCHHHHHHHHHHcCCCCCCE
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEV----EAEKPNPTIFLKACDLLGVKPEDA 245 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~----~~~KP~~~~~~~~~~~l~~~p~~~ 245 (287)
++||+.++|+.|+++ ++++|+||+... +..+++.+|+..+|++.+...+. +..+++|.....++++++..+.+|
T Consensus 69 ~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~~~ 147 (205)
T PRK13582 69 PLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGYRV 147 (205)
T ss_pred CCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHhCCeE
Confidence 689999999999999 999999999988 78999999999888776554321 122344455567777777778999
Q ss_pred EEEcCCchhhHHHHHHcCceEEEECC
Q 023114 246 VHVGDDRRNDVWGARDAGCDAWLWGS 271 (287)
Q Consensus 246 l~VGDs~~~Di~~a~~aG~~~i~v~~ 271 (287)
++|||| .+|+.+++++|+.. .++.
T Consensus 148 v~iGDs-~~D~~~~~aa~~~v-~~~~ 171 (205)
T PRK13582 148 IAAGDS-YNDTTMLGEADAGI-LFRP 171 (205)
T ss_pred EEEeCC-HHHHHHHHhCCCCE-EECC
Confidence 999997 99999999999865 4443
No 62
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.81 E-value=6.4e-19 Score=147.66 Aligned_cols=94 Identities=13% Similarity=0.128 Sum_probs=80.3
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCC----Ccc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCE
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNF----DTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDA 245 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~----~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~ 245 (287)
++|++.++|+.++++|+++++|||. .+. +..+++.+|+.++|+.++++++....||++. ..++++++ +
T Consensus 115 p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~---~~l~~~~i----~ 187 (237)
T TIGR01672 115 PKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKT---QWIQDKNI----R 187 (237)
T ss_pred chhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHH---HHHHhCCC----e
Confidence 5677999999999999999999997 333 5778889999999999999988877888875 34566676 7
Q ss_pred EEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 246 VHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 246 l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
++|||+ .+|+.+|++||+++|.+..+
T Consensus 188 i~vGDs-~~DI~aAk~AGi~~I~V~~g 213 (237)
T TIGR01672 188 IHYGDS-DNDITAAKEAGARGIRILRA 213 (237)
T ss_pred EEEeCC-HHHHHHHHHCCCCEEEEEec
Confidence 999998 99999999999999877554
No 63
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.81 E-value=2e-18 Score=138.03 Aligned_cols=182 Identities=19% Similarity=0.279 Sum_probs=133.1
Q ss_pred CCCeeEEEEeCCCCccCCCccHHHHHH----HH-HHHhCCCCCH-HHHHHHHHHHhcccCCCcccccccCChhHHHHHHh
Q 023114 71 DITHKALLVDAAGTLLVPSQPMAQIYR----EI-GEKYGVAYSE-AEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVS 144 (287)
Q Consensus 71 ~~~~k~vifD~DGTLid~~~~~~~~~~----~~-~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (287)
..++++++||+|.||+..+..++.+.. ++ .+++|++.+. ......+.+.++....+ +..
T Consensus 12 ~~~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e~a~~L~~~~yk~YG~t~aG---------------L~~ 76 (244)
T KOG3109|consen 12 GPNYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEEEAEELRESLYKEYGLTMAG---------------LKA 76 (244)
T ss_pred CccceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHHhHHHHH---------------HHH
Confidence 346799999999999998888776665 33 3567887543 33333333333322111 111
Q ss_pred ccCCCCchHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCC-
Q 023114 145 SSTGCSDSQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVE- 222 (287)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~- 222 (287)
.... .+...+.+.+........ ..+.|..+.+|-.|+..+ .+++||+++. +.++|+.+||.++|+.+++.+...
T Consensus 77 ~~~~-~d~deY~~~V~~~LPlq~-LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~np 152 (244)
T KOG3109|consen 77 VGYI-FDADEYHRFVHGRLPLQD-LKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLNP 152 (244)
T ss_pred hccc-CCHHHHHHHhhccCcHhh-cCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHHhccceeEeeccCC
Confidence 1111 122333334443333332 346778999999998764 8899999999 899999999999999999987655
Q ss_pred -----CCCCCHHHHHHHHHHcCCC-CCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 223 -----AEKPNPTIFLKACDLLGVK-PEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 223 -----~~KP~~~~~~~~~~~l~~~-p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
..||.+++|+.+.+..|++ |.+++||.|| .++|+.|++.||++++++..
T Consensus 153 ~~~~~vcKP~~~afE~a~k~agi~~p~~t~FfDDS-~~NI~~ak~vGl~tvlv~~~ 207 (244)
T KOG3109|consen 153 IEKTVVCKPSEEAFEKAMKVAGIDSPRNTYFFDDS-ERNIQTAKEVGLKTVLVGRE 207 (244)
T ss_pred CCCceeecCCHHHHHHHHHHhCCCCcCceEEEcCc-hhhHHHHHhccceeEEEEee
Confidence 3799999999999999997 9999999998 99999999999999998874
No 64
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.77 E-value=3.2e-18 Score=131.56 Aligned_cols=99 Identities=35% Similarity=0.508 Sum_probs=90.4
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCC----------------CCCHHHHH
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAE----------------KPNPTIFL 232 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~----------------KP~~~~~~ 232 (287)
.++|++.+++++|+++|++++++||+... +..+++.+|+..+++.+++.+..... ||++..+.
T Consensus 24 ~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (139)
T cd01427 24 ELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLL 103 (139)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHHHHH
Confidence 36899999999999999999999999877 79999999998888988888766554 99999999
Q ss_pred HHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEE
Q 023114 233 KACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLW 269 (287)
Q Consensus 233 ~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v 269 (287)
.+.++++.+++++++|||+ .+|+.+++.+|++++++
T Consensus 104 ~~~~~~~~~~~~~~~igD~-~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 104 AALKLLGVDPEEVLMVGDS-LNDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHcCCChhhEEEeCCC-HHHHHHHHHcCCceeeC
Confidence 9999999999999999998 99999999999998874
No 65
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.76 E-value=2.3e-17 Score=136.00 Aligned_cols=171 Identities=15% Similarity=0.122 Sum_probs=115.0
Q ss_pred eEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCC----C
Q 023114 75 KALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGC----S 150 (287)
Q Consensus 75 k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 150 (287)
.+++|||||||++. .|.++....|... .... ..+...|.+++..+.... .
T Consensus 2 ~la~FDlD~TLi~~------~w~~~~~~~g~~~--~~~~------------------~~~~~~~~~~~~~r~~ll~~~g~ 55 (203)
T TIGR02137 2 EIACLDLEGVLVPE------IWIAFAEKTGIDA--LKAT------------------TRDIPDYDVLMKQRLRILDEHGL 55 (203)
T ss_pred eEEEEeCCcccHHH------HHHHHHHHcCCcH--HHHH------------------hcCCcCHHHHHHHHHHHHHHCCC
Confidence 57999999999963 5888888888532 1111 122233333333222111 1
Q ss_pred chHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEeccc-C------C
Q 023114 151 DSQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAE-V------E 222 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~-~------~ 222 (287)
..+.+++++. . ..++||+.++++.+++.+ +++|+||+... +..+++.+|++.+|.+.+..++ . .
T Consensus 56 ~~~~i~~~~~----~---i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~ 127 (203)
T TIGR02137 56 KLGDIQEVIA----T---LKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQL 127 (203)
T ss_pred CHHHHHHHHH----h---CCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCeeECeee
Confidence 2233333322 1 237899999999999985 99999999988 7999999999988875433322 1 1
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC-----------CCCHHHHHHHh
Q 023114 223 AEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD-----------VHSFKEVAQRI 283 (287)
Q Consensus 223 ~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~-----------~~~~~el~~~l 283 (287)
..+|++..+...+++.+. ++++|||+ .||+.+++.||...++-..+ +++..|+...+
T Consensus 128 ~~~~~K~~~l~~l~~~~~---~~v~vGDs-~nDl~ml~~Ag~~ia~~ak~~~~~~~~~~~~~~~~~~~~~~~ 195 (203)
T TIGR02137 128 RQKDPKRQSVIAFKSLYY---RVIAAGDS-YNDTTMLSEAHAGILFHAPENVIREFPQFPAVHTYEDLKREF 195 (203)
T ss_pred cCcchHHHHHHHHHhhCC---CEEEEeCC-HHHHHHHHhCCCCEEecCCHHHHHhCCCCCcccCHHHHHHHH
Confidence 345666666666666664 79999997 99999999999887775553 56666666554
No 66
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.76 E-value=6e-19 Score=152.96 Aligned_cols=111 Identities=20% Similarity=0.243 Sum_probs=90.9
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-h-HHHHHhcCCcCccceEE---ecccCCCCCCCHHHHHHHHHHcCCCCCCE
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-L-RPVLRALNCDHWFDAVA---VSAEVEAEKPNPTIFLKACDLLGVKPEDA 245 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~-~~~l~~~gl~~~f~~~~---~~~~~~~~KP~~~~~~~~~~~l~~~p~~~ 245 (287)
-|+++.++++.|++.|+ ++|+||.+.. . ...+...|+..+|+.+. ..+....+||+|.+|..+++++|++|++|
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 222 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPART 222 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhE
Confidence 36899999999998887 7899998765 2 23344556666666553 33445678999999999999999999999
Q ss_pred EEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 246 VHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 246 l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
+||||+...||.+|+++|+.+++|..|..+.+++.+.
T Consensus 223 lmIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~~ 259 (279)
T TIGR01452 223 LMVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQEY 259 (279)
T ss_pred EEECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHhh
Confidence 9999974599999999999999999999999988753
No 67
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.75 E-value=1.7e-17 Score=138.36 Aligned_cols=162 Identities=14% Similarity=0.090 Sum_probs=108.5
Q ss_pred EEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCCchHHHH
Q 023114 77 LLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCSDSQYFE 156 (287)
Q Consensus 77 vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (287)
|+||+||||++ .+.+..+++.++. ....++.. .++.+...+.+.+........... .+
T Consensus 2 ~~fDFDgTit~-----~d~~~~~~~~~~~-~~~~~~~~---------------~~~~g~~~~~e~~~~~~~~~~~~~-~~ 59 (214)
T TIGR03333 2 IICDFDGTITN-----NDNIISIMKQFAP-PEWEALKD---------------GVLSKTLSIQEGVGRMFGLLPSSL-KE 59 (214)
T ss_pred EEeccCCCCCc-----chhHHHHHHHhCc-HHHHHHHH---------------HHHcCCccHHHHHHHHHhhCCCch-HH
Confidence 79999999997 3445555555432 12223322 223344445555544333332221 22
Q ss_pred HHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCcc---ceEEecccCCCCCCCHHHH-
Q 023114 157 ELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWF---DAVAVSAEVEAEKPNPTIF- 231 (287)
Q Consensus 157 ~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f---~~~~~~~~~~~~KP~~~~~- 231 (287)
++.+..... ..++||+.++++.++++|++++|+|++... +..+++.++...++ +..+.++.....||+|..+
T Consensus 60 ~~~~~~~~~---~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~ 136 (214)
T TIGR03333 60 EITSFVLET---AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGT 136 (214)
T ss_pred HHHHHHHhc---CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccc
Confidence 332222221 347899999999999999999999999887 78888887544443 2344455556678887765
Q ss_pred ---------HHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCc
Q 023114 232 ---------LKACDLLGVKPEDAVHVGDDRRNDVWGARDAGC 264 (287)
Q Consensus 232 ---------~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~ 264 (287)
..++++++..++++++|||+ .+|+.+|+.||+
T Consensus 137 ~~~~cg~~K~~~l~~~~~~~~~~i~iGDg-~~D~~~a~~Ad~ 177 (214)
T TIGR03333 137 CQNQCGCCKPSLIRKLSEPNDYHIVIGDS-VTDVEAAKQSDL 177 (214)
T ss_pred cccCCCCCHHHHHHHHhhcCCcEEEEeCC-HHHHHHHHhCCe
Confidence 47788888889999999997 999999999997
No 68
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.75 E-value=4.4e-17 Score=132.87 Aligned_cols=92 Identities=17% Similarity=0.231 Sum_probs=78.1
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEeccc--------------------CCCCCCCH
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAE--------------------VEAEKPNP 228 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~--------------------~~~~KP~~ 228 (287)
+++||+.++++.|+++|++++|+||+... +..+++.+|+.++|+.+++++. ...+.+|+
T Consensus 72 ~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K~ 151 (188)
T TIGR01489 72 PIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCKG 151 (188)
T ss_pred CCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCHH
Confidence 47899999999999999999999999888 7889999999999999887543 12344578
Q ss_pred HHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCce
Q 023114 229 TIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCD 265 (287)
Q Consensus 229 ~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~ 265 (287)
+.+..+.++. |+++++|||+ .+|+.+|+.+++-
T Consensus 152 ~~~~~~~~~~---~~~~i~iGD~-~~D~~aa~~~d~~ 184 (188)
T TIGR01489 152 KVIHKLSEPK---YQHIIYIGDG-VTDVCPAKLSDVV 184 (188)
T ss_pred HHHHHHHhhc---CceEEEECCC-cchhchHhcCCcc
Confidence 8888887765 7899999997 9999999998753
No 69
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.75 E-value=3.5e-17 Score=144.44 Aligned_cols=110 Identities=19% Similarity=0.341 Sum_probs=95.9
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCC---------------cc-hHHHHHhcCCcCccceEEec-----ccCCCCCCCHH
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFD---------------TR-LRPVLRALNCDHWFDAVAVS-----AEVEAEKPNPT 229 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~---------------~~-~~~~l~~~gl~~~f~~~~~~-----~~~~~~KP~~~ 229 (287)
++||+.++|+.|+++|++++|+||.+ .. +..+++.+|+. |+.++.+ ++...+||+|.
T Consensus 31 l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~--fd~i~i~~~~~sd~~~~rKP~p~ 108 (354)
T PRK05446 31 FEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIK--FDEVLICPHFPEDNCSCRKPKTG 108 (354)
T ss_pred ECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCc--eeeEEEeCCcCcccCCCCCCCHH
Confidence 78999999999999999999999952 22 45567888884 6665443 56678999999
Q ss_pred HHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 230 IFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 230 ~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
++..++++++++|+++++|||+ .+|+.+|+++|+++|+++...-+|+++.+.|
T Consensus 109 ~l~~a~~~l~v~~~~svmIGDs-~sDi~aAk~aGi~~I~v~~~~~~~~~i~~~l 161 (354)
T PRK05446 109 LVEEYLAEGAIDLANSYVIGDR-ETDVQLAENMGIKGIRYARETLNWDAIAEQL 161 (354)
T ss_pred HHHHHHHHcCCCcccEEEEcCC-HHHHHHHHHCCCeEEEEECCCCCHHHHHHHH
Confidence 9999999999999999999997 9999999999999999999899999998876
No 70
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.74 E-value=3.3e-18 Score=146.42 Aligned_cols=107 Identities=25% Similarity=0.321 Sum_probs=89.2
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCC---CCCCCHHHHHHHHHHcCCCCCCEE
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVE---AEKPNPTIFLKACDLLGVKPEDAV 246 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~---~~KP~~~~~~~~~~~l~~~p~~~l 246 (287)
.|+++.+.++.|++.+++++++||.+.. ....+..+|+..+|+.+..+.... .+||+|.+|..++++++++|++++
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~ 200 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAV 200 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEE
Confidence 3688999999999989999999998776 455556778888887666554433 379999999999999999999999
Q ss_pred EEcCCchhhHHHHHHcCceEEEECCCCCCHH
Q 023114 247 HVGDDRRNDVWGARDAGCDAWLWGSDVHSFK 277 (287)
Q Consensus 247 ~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~ 277 (287)
+|||+..+|+.+|+++|+.+++|.+|..+..
T Consensus 201 ~vGD~~~~Di~~a~~~G~~~i~v~~G~~~~~ 231 (257)
T TIGR01458 201 MIGDDCRDDVGGAQDCGMRGIQVRTGKYRPS 231 (257)
T ss_pred EECCCcHHHHHHHHHcCCeEEEECCCCCChH
Confidence 9999844999999999999999988764443
No 71
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.74 E-value=3.2e-17 Score=128.68 Aligned_cols=160 Identities=14% Similarity=0.161 Sum_probs=122.0
Q ss_pred eEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCCchHH
Q 023114 75 KALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCSDSQY 154 (287)
Q Consensus 75 k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (287)
++|+||||+|++- .+.+++++...|......++ +.+.|++..+|++.+..+.........
T Consensus 17 ~aVcFDvDSTvi~-----eEgIdelA~~~G~~~~Va~~---------------T~rAMng~~~F~eaL~~Rl~llqp~~~ 76 (227)
T KOG1615|consen 17 DAVCFDVDSTVIQ-----EEGIDELAAYCGVGEAVAEV---------------TRRAMNGEADFQEALAARLSLLQPLQV 76 (227)
T ss_pred CeEEEecCcchhH-----HhhHHHHHHHhCchHHHHHH---------------HHHHhCCCCcHHHHHHHHHHHhcccHH
Confidence 8999999999996 78899999999987777666 567899999999999998665432211
Q ss_pred HHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcC--ccceEEecccCCC--------
Q 023114 155 FEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDH--WFDAVAVSAEVEA-------- 223 (287)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~--~f~~~~~~~~~~~-------- 223 (287)
+. .++.... ...+.||+++++..|+++|.+++++|+++.. +.++...+||+. .+.+.+..+..+.
T Consensus 77 --qv-~~~v~~~-k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ 152 (227)
T KOG1615|consen 77 --QV-EQFVIKQ-KPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNE 152 (227)
T ss_pred --HH-HHHHhcC-CCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCC
Confidence 11 1122111 1347799999999999999999999999999 799999999975 5555544443222
Q ss_pred ----CCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHH
Q 023114 224 ----EKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARD 261 (287)
Q Consensus 224 ----~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~ 261 (287)
+--|++.+..+.+ +.+...++|||| +++|+++..-
T Consensus 153 ptsdsggKa~~i~~lrk--~~~~~~~~mvGD-GatDlea~~p 191 (227)
T KOG1615|consen 153 PTSDSGGKAEVIALLRK--NYNYKTIVMVGD-GATDLEAMPP 191 (227)
T ss_pred ccccCCccHHHHHHHHh--CCChheeEEecC-CccccccCCc
Confidence 2336677777777 777789999999 5999987665
No 72
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.73 E-value=4.3e-17 Score=130.93 Aligned_cols=98 Identities=29% Similarity=0.318 Sum_probs=83.5
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCC-cc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFD-TR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~-~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
++||+.++|++|+++|++++|+||.+ .. +..+++.+|+..++ ...||+|++|..++++++++|+++++|
T Consensus 44 ~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~---------~~~KP~p~~~~~~l~~~~~~~~~~l~I 114 (170)
T TIGR01668 44 AYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVLP---------HAVKPPGCAFRRAHPEMGLTSEQVAVV 114 (170)
T ss_pred cChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEEc---------CCCCCChHHHHHHHHHcCCCHHHEEEE
Confidence 46999999999999999999999988 44 56667777765321 347999999999999999999999999
Q ss_pred cCCch-hhHHHHHHcCceEEEECCCCCCHHH
Q 023114 249 GDDRR-NDVWGARDAGCDAWLWGSDVHSFKE 278 (287)
Q Consensus 249 GDs~~-~Di~~a~~aG~~~i~v~~~~~~~~e 278 (287)
||+ . .|+.+|+++|+.+|++..+..+.+.
T Consensus 115 GDs-~~~Di~aA~~aGi~~i~v~~g~~~~~~ 144 (170)
T TIGR01668 115 GDR-LFTDVMGGNRNGSYTILVEPLVHPDQW 144 (170)
T ss_pred CCc-chHHHHHHHHcCCeEEEEccCcCCccc
Confidence 998 6 7999999999999999887555443
No 73
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.72 E-value=9.8e-17 Score=129.66 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=77.3
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEeccc------------CCCCCCCHHHHHHHHHH
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAE------------VEAEKPNPTIFLKACDL 237 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~------------~~~~KP~~~~~~~~~~~ 237 (287)
++||+.++++.++++|++++|+|++... +..+++.+|+...|.+.+..++ ...+..|+..+...+++
T Consensus 74 ~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~~~ 153 (177)
T TIGR01488 74 LRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELLEE 153 (177)
T ss_pred cCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHHHH
Confidence 6799999999999999999999999888 7999999999888876665532 12345567788888999
Q ss_pred cCCCCCCEEEEcCCchhhHHHHHHc
Q 023114 238 LGVKPEDAVHVGDDRRNDVWGARDA 262 (287)
Q Consensus 238 l~~~p~~~l~VGDs~~~Di~~a~~a 262 (287)
++++++++++|||| .+|+.+++.|
T Consensus 154 ~~~~~~~~~~iGDs-~~D~~~~~~a 177 (177)
T TIGR01488 154 SKITLKKIIAVGDS-VNDLPMLKLA 177 (177)
T ss_pred hCCCHHHEEEEeCC-HHHHHHHhcC
Confidence 99999999999997 9999998864
No 74
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.71 E-value=3.1e-16 Score=129.57 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccce-EEeccc---------
Q 023114 152 SQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDA-VAVSAE--------- 220 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~-~~~~~~--------- 220 (287)
.+.++.+.+.+........++||+.++++.++++|++++|+|+++.. +..+++.+|++.+|.. +...++
T Consensus 69 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~ 148 (202)
T TIGR01490 69 EEDVRAIVEEFVNQKIESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGNIDG 148 (202)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEeCCccC
Confidence 33344444444433222347899999999999999999999999988 7999999999888765 222121
Q ss_pred -CCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEE
Q 023114 221 -VEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWL 268 (287)
Q Consensus 221 -~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~ 268 (287)
...+++|...+...+++.++++++|++|||| .+|+.+++.+|...+.
T Consensus 149 ~~~~g~~K~~~l~~~~~~~~~~~~~~~~~gDs-~~D~~~~~~a~~~~~v 196 (202)
T TIGR01490 149 NNCKGEGKVHALAELLAEEQIDLKDSYAYGDS-ISDLPLLSLVGHPYVV 196 (202)
T ss_pred CCCCChHHHHHHHHHHHHcCCCHHHcEeeeCC-cccHHHHHhCCCcEEe
Confidence 1235677888999999999999999999998 9999999999977654
No 75
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.69 E-value=4.5e-17 Score=128.69 Aligned_cols=89 Identities=16% Similarity=0.242 Sum_probs=77.7
Q ss_pred HHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhH
Q 023114 178 VFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDV 256 (287)
Q Consensus 178 ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di 256 (287)
.+++|+++|++++|+||.+.. +...++.+|+..+|+. .+|+++.+..+++++|++|++|++|||+ .+|+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~~---------~~~k~~~~~~~~~~~~~~~~~~~~vGDs-~~D~ 105 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQG---------QSNKLIAFSDILEKLALAPENVAYIGDD-LIDW 105 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEec---------ccchHHHHHHHHHHcCCCHHHEEEECCC-HHHH
Confidence 789999999999999999887 7899999999877652 3789999999999999999999999997 9999
Q ss_pred HHHHHcCceEEEECCCCCCHH
Q 023114 257 WGARDAGCDAWLWGSDVHSFK 277 (287)
Q Consensus 257 ~~a~~aG~~~i~v~~~~~~~~ 277 (287)
.+++.+|+. +.+.+.....+
T Consensus 106 ~~~~~ag~~-~~v~~~~~~~~ 125 (154)
T TIGR01670 106 PVMEKVGLS-VAVADAHPLLI 125 (154)
T ss_pred HHHHHCCCe-EecCCcCHHHH
Confidence 999999997 77766543333
No 76
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.67 E-value=3.3e-16 Score=119.79 Aligned_cols=86 Identities=19% Similarity=0.275 Sum_probs=75.7
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCC-Ccc-hHHHHHhcC-------CcCccceEEecccCCCCCCCHHHHHHHHHHcC--
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNF-DTR-LRPVLRALN-------CDHWFDAVAVSAEVEAEKPNPTIFLKACDLLG-- 239 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~-~~~-~~~~l~~~g-------l~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~-- 239 (287)
++||+.++|+.|+++|++++|+||. ... ....++..+ +.++|+.++++++ +|+|+.|..+++++|
T Consensus 30 ~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~----~pkp~~~~~a~~~lg~~ 105 (128)
T TIGR01681 30 TIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYW----LPKSPRLVEIALKLNGV 105 (128)
T ss_pred HHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCC----CcHHHHHHHHHHHhcCC
Confidence 6799999999999999999999999 555 577788888 7889998888753 589999999999999
Q ss_pred CCCCCEEEEcCCchhhHHHHHH
Q 023114 240 VKPEDAVHVGDDRRNDVWGARD 261 (287)
Q Consensus 240 ~~p~~~l~VGDs~~~Di~~a~~ 261 (287)
++|++|++|||+ ..|+...+.
T Consensus 106 ~~p~~~l~igDs-~~n~~~~~~ 126 (128)
T TIGR01681 106 LKPKSILFVDDR-PDNNEEVDY 126 (128)
T ss_pred CCcceEEEECCC-HhHHHHHHh
Confidence 999999999998 998876653
No 77
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.66 E-value=2.6e-16 Score=130.93 Aligned_cols=88 Identities=28% Similarity=0.499 Sum_probs=77.2
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
+++||+.+++++|++.|++++++||.+.. ...+.+.+|+. +..+.+... +||++.+|..+++++++++++|+||
T Consensus 127 ~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~---~~~v~a~~~--~kP~~k~~~~~i~~l~~~~~~v~~v 201 (215)
T PF00702_consen 127 PLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIF---DSIVFARVI--GKPEPKIFLRIIKELQVKPGEVAMV 201 (215)
T ss_dssp EBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSC---SEEEEESHE--TTTHHHHHHHHHHHHTCTGGGEEEE
T ss_pred cchhhhhhhhhhhhccCcceeeeeccccccccccccccccc---ccccccccc--ccccchhHHHHHHHHhcCCCEEEEE
Confidence 56899999999999999999999988877 79999999994 333333322 8999999999999999999999999
Q ss_pred cCCchhhHHHHHHcC
Q 023114 249 GDDRRNDVWGARDAG 263 (287)
Q Consensus 249 GDs~~~Di~~a~~aG 263 (287)
||+ .||+.++++||
T Consensus 202 GDg-~nD~~al~~Ag 215 (215)
T PF00702_consen 202 GDG-VNDAPALKAAG 215 (215)
T ss_dssp ESS-GGHHHHHHHSS
T ss_pred ccC-HHHHHHHHhCc
Confidence 996 99999999997
No 78
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.65 E-value=5.5e-16 Score=135.93 Aligned_cols=101 Identities=21% Similarity=0.218 Sum_probs=92.0
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcC-ccceEEecc-------cCCCCCCCHHHHHHHHHHcCC-
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDH-WFDAVAVSA-------EVEAEKPNPTIFLKACDLLGV- 240 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~-~f~~~~~~~-------~~~~~KP~~~~~~~~~~~l~~- 240 (287)
++||+.++++.|+++|++++++||.+.. ....++.+++.. +|+.+++.+ +....||+|.++..++++++.
T Consensus 188 ~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~ 267 (300)
T PHA02530 188 PNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAP 267 (300)
T ss_pred CChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhcc
Confidence 6899999999999999999999999888 688999999986 899998888 455689999999999999988
Q ss_pred CCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 241 KPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 241 ~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
+|++|++|||+ .+|+.+|+++|+.+++|..|
T Consensus 268 ~~~~~~~vgD~-~~d~~~a~~~Gi~~i~v~~g 298 (300)
T PHA02530 268 KYDVLLAVDDR-DQVVDMWRRIGLECWQVAPG 298 (300)
T ss_pred CceEEEEEcCc-HHHHHHHHHhCCeEEEecCC
Confidence 67999999997 99999999999999998653
No 79
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.65 E-value=2.2e-16 Score=134.55 Aligned_cols=108 Identities=27% Similarity=0.269 Sum_probs=81.1
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcchH-H--H-HHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEE
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTRLR-P--V-LRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVH 247 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~~~-~--~-l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~ 247 (287)
|+.....+..++ .|.+ .|+||.+.... . . ...-.+...++...+.+....+||+|.+|..++++++++|+++++
T Consensus 123 y~~l~~a~~~l~-~g~~-~i~tN~D~~~~~~~~~~~~~G~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~ 200 (249)
T TIGR01457 123 YEKFATATLAIR-KGAH-FIGTNGDLAIPTERGLLPGNGSLITVLEVATGVKPVYIGKPNAIIMEKAVEHLGTEREETLM 200 (249)
T ss_pred HHHHHHHHHHHH-CCCe-EEEECCCCCCCCCCCCCCCcHHHHHHHHHHhCCCccccCCChHHHHHHHHHHcCCCcccEEE
Confidence 456666666664 5776 88899765521 1 1 111222333555566666778999999999999999999999999
Q ss_pred EcCCchhhHHHHHHcCceEEEECCCCCCHHHHHH
Q 023114 248 VGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQ 281 (287)
Q Consensus 248 VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~ 281 (287)
|||+..+|+.+|+++|+++++|.+|..+.+++.+
T Consensus 201 VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~ 234 (249)
T TIGR01457 201 VGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAG 234 (249)
T ss_pred ECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhc
Confidence 9998348999999999999999999888877643
No 80
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.64 E-value=2.2e-15 Score=127.84 Aligned_cols=58 Identities=33% Similarity=0.539 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHH
Q 023114 224 EKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQ 281 (287)
Q Consensus 224 ~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~ 281 (287)
+||++.+|+.+++.++.+++++++|||+..+||.+|+++|+.+++|-+|+++.+++..
T Consensus 189 GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~~~~ 246 (269)
T COG0647 189 GKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLDR 246 (269)
T ss_pred CCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhhhhh
Confidence 7999999999999999999999999999999999999999999999999998888653
No 81
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.64 E-value=3.1e-16 Score=125.08 Aligned_cols=93 Identities=17% Similarity=0.283 Sum_probs=78.1
Q ss_pred HHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhH
Q 023114 178 VFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDV 256 (287)
Q Consensus 178 ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di 256 (287)
.+..|++.|++++|+||.+.. +...++.+|+..+|+. .||+|+.|..++++++++|+++++|||+ .||+
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~~---------~kpkp~~~~~~~~~l~~~~~ev~~iGD~-~nDi 111 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHEG---------IKKKTEPYAQMLEEMNISDAEVCYVGDD-LVDL 111 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEec---------CCCCHHHHHHHHHHcCcCHHHEEEECCC-HHHH
Confidence 455678899999999999888 7999999999887763 2799999999999999999999999997 9999
Q ss_pred HHHHHcCceEEEECCCCCCHHHHHH
Q 023114 257 WGARDAGCDAWLWGSDVHSFKEVAQ 281 (287)
Q Consensus 257 ~~a~~aG~~~i~v~~~~~~~~el~~ 281 (287)
.+++.+|+..++ .+....+++.++
T Consensus 112 ~~~~~ag~~~am-~nA~~~lk~~A~ 135 (169)
T TIGR02726 112 SMMKRVGLAVAV-GDAVADVKEAAA 135 (169)
T ss_pred HHHHHCCCeEEC-cCchHHHHHhCC
Confidence 999999987555 554444444443
No 82
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.64 E-value=2.3e-15 Score=126.08 Aligned_cols=95 Identities=14% Similarity=0.132 Sum_probs=77.5
Q ss_pred ccCCccHHHHHHHHHHcCCeEEEEeCCCc----c-hHHHHHhcCC--cCccceEEecccCCCCCCCHHHHHHHHHHcCCC
Q 023114 169 HLCDPEAEKVFKAIRKAGVKLAVVSNFDT----R-LRPVLRALNC--DHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVK 241 (287)
Q Consensus 169 ~~~~pg~~~ll~~L~~~g~~i~ivSn~~~----~-~~~~l~~~gl--~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~ 241 (287)
..++||++++|+.++++|++++++||.+. . ...+++.+|+ .++|+.++++++. .||++.. .++++++
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~--~K~~K~~---~l~~~~i- 186 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKP--GQYTKTQ---WLKKKNI- 186 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCC--CCCCHHH---HHHhcCC-
Confidence 34789999999999999999999999642 2 3666667999 8899988888753 6676653 4556676
Q ss_pred CCCEEEEcCCchhhHHHHHHcCceEEEECCCC
Q 023114 242 PEDAVHVGDDRRNDVWGARDAGCDAWLWGSDV 273 (287)
Q Consensus 242 p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~ 273 (287)
+++|||+ .+|+.+|++||+++|.+..+.
T Consensus 187 ---~I~IGDs-~~Di~aA~~AGi~~I~v~~G~ 214 (237)
T PRK11009 187 ---RIFYGDS-DNDITAAREAGARGIRILRAA 214 (237)
T ss_pred ---eEEEcCC-HHHHHHHHHcCCcEEEEecCC
Confidence 8999998 999999999999998887653
No 83
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.63 E-value=1.7e-15 Score=116.58 Aligned_cols=91 Identities=30% Similarity=0.418 Sum_probs=82.3
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcC
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGD 250 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGD 250 (287)
.|++++.+.+++.+|+++.|+||..+. +..+.+.+|+. .+ ....||.+..|..++++++++|++|++|||
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~----fi-----~~A~KP~~~~fr~Al~~m~l~~~~vvmVGD 118 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP----FI-----YRAKKPFGRAFRRALKEMNLPPEEVVMVGD 118 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCc----ee-----ecccCccHHHHHHHHHHcCCChhHEEEEcc
Confidence 377888889999999999999998777 89999998874 33 256999999999999999999999999999
Q ss_pred CchhhHHHHHHcCceEEEECC
Q 023114 251 DRRNDVWGARDAGCDAWLWGS 271 (287)
Q Consensus 251 s~~~Di~~a~~aG~~~i~v~~ 271 (287)
..-.|+-+++.+||++|+|..
T Consensus 119 qL~TDVlggnr~G~~tIlV~P 139 (175)
T COG2179 119 QLFTDVLGGNRAGMRTILVEP 139 (175)
T ss_pred hhhhhhhcccccCcEEEEEEE
Confidence 999999999999999999876
No 84
>PLN02645 phosphoglycolate phosphatase
Probab=99.62 E-value=4.3e-16 Score=137.02 Aligned_cols=106 Identities=22% Similarity=0.221 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCCeEEEEeCCCcc--hHHHHHhcCCcCccceEEecccCC---CCCCCHHHHHHHHHHcCCCCCCEEEEcC
Q 023114 176 EKVFKAIRKAGVKLAVVSNFDTR--LRPVLRALNCDHWFDAVAVSAEVE---AEKPNPTIFLKACDLLGVKPEDAVHVGD 250 (287)
Q Consensus 176 ~~ll~~L~~~g~~i~ivSn~~~~--~~~~l~~~gl~~~f~~~~~~~~~~---~~KP~~~~~~~~~~~l~~~p~~~l~VGD 250 (287)
......|+.++-..+|+||.+.. ....+...|+..+|+.+....... .+||+|.+|..++++++++++++++|||
T Consensus 176 ~~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VGD 255 (311)
T PLN02645 176 QYATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVGD 255 (311)
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEcC
Confidence 33444555433358899998764 234445667777788776665533 3699999999999999999999999999
Q ss_pred CchhhHHHHHHcCceEEEECCCCCCHHHHHH
Q 023114 251 DRRNDVWGARDAGCDAWLWGSDVHSFKEVAQ 281 (287)
Q Consensus 251 s~~~Di~~a~~aG~~~i~v~~~~~~~~el~~ 281 (287)
+..+|+.+|+++|+.+++|.+|..+.+++.+
T Consensus 256 ~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~ 286 (311)
T PLN02645 256 RLDTDILFGQNGGCKTLLVLSGVTSESMLLS 286 (311)
T ss_pred CcHHHHHHHHHcCCCEEEEcCCCCCHHHHHh
Confidence 8449999999999999999988888777654
No 85
>PRK10444 UMP phosphatase; Provisional
Probab=99.61 E-value=1.6e-15 Score=128.89 Aligned_cols=67 Identities=25% Similarity=0.368 Sum_probs=58.6
Q ss_pred EEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHH
Q 023114 215 VAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQ 281 (287)
Q Consensus 215 ~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~ 281 (287)
..+.+....+||+|.+|..++++++++|++|++|||+..+|+.+|+++|+.+++|.+|.++.+++.+
T Consensus 164 ~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~ 230 (248)
T PRK10444 164 ISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDS 230 (248)
T ss_pred HhCCCccccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhc
Confidence 3444455568999999999999999999999999998458999999999999999999988888754
No 86
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.58 E-value=3.3e-15 Score=121.45 Aligned_cols=83 Identities=16% Similarity=0.302 Sum_probs=71.9
Q ss_pred HHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhH
Q 023114 178 VFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDV 256 (287)
Q Consensus 178 ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di 256 (287)
.++.|+++|++++|+||.+.. +..+++.+|+..+|+ ..++++..+..+++++|++|+++++|||+ .+|+
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~---------g~~~k~~~l~~~~~~~gl~~~ev~~VGDs-~~D~ 125 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQ---------GQSNKLIAFSDLLEKLAIAPEQVAYIGDD-LIDW 125 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeec---------CCCcHHHHHHHHHHHhCCCHHHEEEECCC-HHHH
Confidence 556677899999999999877 799999999987764 14678899999999999999999999998 9999
Q ss_pred HHHHHcCceEEEECC
Q 023114 257 WGARDAGCDAWLWGS 271 (287)
Q Consensus 257 ~~a~~aG~~~i~v~~ 271 (287)
.+++.+|+.. .+++
T Consensus 126 ~~a~~aG~~~-~v~~ 139 (183)
T PRK09484 126 PVMEKVGLSV-AVAD 139 (183)
T ss_pred HHHHHCCCeE-ecCC
Confidence 9999999984 4554
No 87
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.57 E-value=3.7e-15 Score=126.67 Aligned_cols=99 Identities=21% Similarity=0.219 Sum_probs=82.1
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceE--EecccCCCCCCCHHHHHHHHHHcCCC-CCCEEE
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAV--AVSAEVEAEKPNPTIFLKACDLLGVK-PEDAVH 247 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~--~~~~~~~~~KP~~~~~~~~~~~l~~~-p~~~l~ 247 (287)
+|++.++++.+.++|+++ |+||.+.. ....+..+|...+|+.+ .+.+....+||+|.+|..++++++.. ++++++
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~ 218 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRMLM 218 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 689999999998889997 88998776 44556677777666644 56666668999999999999999975 578999
Q ss_pred EcCCchhhHHHHHHcCceEEEECC
Q 023114 248 VGDDRRNDVWGARDAGCDAWLWGS 271 (287)
Q Consensus 248 VGDs~~~Di~~a~~aG~~~i~v~~ 271 (287)
|||+..+|+.+|+++|+.+++|.+
T Consensus 219 vGD~~~~Di~~a~~~G~~~i~v~t 242 (242)
T TIGR01459 219 VGDSFYTDILGANRLGIDTALVLT 242 (242)
T ss_pred ECCCcHHHHHHHHHCCCeEEEEeC
Confidence 999746999999999999998753
No 88
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.54 E-value=4.2e-14 Score=130.84 Aligned_cols=92 Identities=17% Similarity=0.264 Sum_probs=81.5
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCc------------c-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHH
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDT------------R-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDL 237 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~------------~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~ 237 (287)
++||+.+.|+.|++.|++++|+||... . +..+++.+|+. |+.+++.++....||+|.++..++++
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip--fdviia~~~~~~RKP~pGm~~~a~~~ 275 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP--FQVFIAIGAGFYRKPLTGMWDHLKEE 275 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc--eEEEEeCCCCCCCCCCHHHHHHHHHh
Confidence 579999999999999999999999665 2 56778888985 88888888778899999999999999
Q ss_pred cC----CCCCCEEEEcCCchhhHHHHHHcCce
Q 023114 238 LG----VKPEDAVHVGDDRRNDVWGARDAGCD 265 (287)
Q Consensus 238 l~----~~p~~~l~VGDs~~~Di~~a~~aG~~ 265 (287)
++ +++++++||||+ ..|+.+++.+|..
T Consensus 276 ~~~~~~Id~~~S~~VGDa-agr~~~g~~ag~~ 306 (526)
T TIGR01663 276 ANDGTEIQEDDCFFVGDA-AGRPANGKAAGKK 306 (526)
T ss_pred cCcccCCCHHHeEEeCCc-ccchHHHHhcCCC
Confidence 85 899999999997 9999998888854
No 89
>PRK11590 hypothetical protein; Provisional
Probab=99.53 E-value=5.1e-13 Score=111.18 Aligned_cols=186 Identities=9% Similarity=-0.062 Sum_probs=104.8
Q ss_pred eeEEEEeCCCCccCCCccHHHHHHHHH-HHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCCch
Q 023114 74 HKALLVDAAGTLLVPSQPMAQIYREIG-EKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCSDS 152 (287)
Q Consensus 74 ~k~vifD~DGTLid~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (287)
.|+++||+||||+ ...+...+...+ .++|+...... .+....+.......... .......+....... +.
T Consensus 6 ~k~~iFD~DGTL~--~~d~~~~~~~~~~~~~g~~~~~~~---~~~~~ig~~l~~~~~~~---~~~~~~~~~~~~~g~-~~ 76 (211)
T PRK11590 6 RRVVFFDLDGTLH--QQDMFGSFLRYLLRRQPLNLLLVL---PLLPVIGLGLLVKGRAA---RWPMSLLLWGCTFGH-SE 76 (211)
T ss_pred ceEEEEecCCCCc--ccchHHHHHHHHHHhcchhhHHHh---HHHHHhccCcccchhhh---hhhHHHHHHHHHcCC-CH
Confidence 3899999999999 334566666666 77776532211 12233333222211110 000001111111121 23
Q ss_pred HHHHHHHHHHhhcccc-ccCCccHHHHH-HHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecc-cC---CC--
Q 023114 153 QYFEELYNYYTTEKAW-HLCDPEAEKVF-KAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSA-EV---EA-- 223 (287)
Q Consensus 153 ~~~~~~~~~~~~~~~~-~~~~pg~~~ll-~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~-~~---~~-- 223 (287)
+.++++.+.|...... ..++||+.++| +.+++.|++++|+||++.. +..+++.+|+.. .+.+++.+ +. +.
T Consensus 77 ~~~~~~~~~f~~~~~~~~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~-~~~~i~t~l~~~~tg~~~ 155 (211)
T PRK11590 77 ARLQALEADFVRWFRDNVTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLP-RVNLIASQMQRRYGGWVL 155 (211)
T ss_pred HHHHHHHHHHHHHHHHhCcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccc-cCceEEEEEEEEEccEEC
Confidence 3344444444322111 23689999999 6788899999999999988 688999988632 23333333 11 11
Q ss_pred CCC-CHHH-HHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECC
Q 023114 224 EKP-NPTI-FLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGS 271 (287)
Q Consensus 224 ~KP-~~~~-~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~ 271 (287)
+.+ ..+. ...+-+.++.+...+.+.||| .+|+.+...+| ..++|+.
T Consensus 156 g~~c~g~~K~~~l~~~~~~~~~~~~aY~Ds-~~D~pmL~~a~-~~~~vnp 203 (211)
T PRK11590 156 TLRCLGHEKVAQLERKIGTPLRLYSGYSDS-KQDNPLLYFCQ-HRWRVTP 203 (211)
T ss_pred CccCCChHHHHHHHHHhCCCcceEEEecCC-cccHHHHHhCC-CCEEECc
Confidence 110 1111 122233346677888999999 99999999999 5566665
No 90
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.51 E-value=5.7e-14 Score=124.08 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=81.1
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHh----cCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCE
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRA----LNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDA 245 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~----~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~ 245 (287)
++||+.++|+.|++.|++++|+|+.+.. +..+++. +++.++|+.+... .||||+.+..+++++|++|+++
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~-----~~pk~~~i~~~~~~l~i~~~~~ 106 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSIN-----WGPKSESLRKIAKKLNLGTDSF 106 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEEe-----cCchHHHHHHHHHHhCCCcCcE
Confidence 4699999999999999999999999877 7889998 8999999888654 5899999999999999999999
Q ss_pred EEEcCCchhhHHHHHHcCce
Q 023114 246 VHVGDDRRNDVWGARDAGCD 265 (287)
Q Consensus 246 l~VGDs~~~Di~~a~~aG~~ 265 (287)
+||||+ ..|+.++++++-.
T Consensus 107 vfidD~-~~d~~~~~~~lp~ 125 (320)
T TIGR01686 107 LFIDDN-PAERANVKITLPV 125 (320)
T ss_pred EEECCC-HHHHHHHHHHCCC
Confidence 999998 9999999997754
No 91
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.50 E-value=3.7e-14 Score=111.28 Aligned_cols=93 Identities=16% Similarity=0.081 Sum_probs=84.4
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcC-ccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEE
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDH-WFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVH 247 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~-~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~ 247 (287)
.++||+.++|++|+ ++++++|+|++... +..+++.+++.. +|+.+++++++...||+ |.++++++|.+|++|++
T Consensus 45 ~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~~~i~ 120 (148)
T smart00577 45 KKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLLGRDLSNVII 120 (148)
T ss_pred EECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCe---EeecHHHcCCChhcEEE
Confidence 36899999999998 56999999999988 789999999965 46999999999999997 99999999999999999
Q ss_pred EcCCchhhHHHHHHcCceEE
Q 023114 248 VGDDRRNDVWGARDAGCDAW 267 (287)
Q Consensus 248 VGDs~~~Di~~a~~aG~~~i 267 (287)
|||+ .+|+.+++++|+..-
T Consensus 121 i~Ds-~~~~~aa~~ngI~i~ 139 (148)
T smart00577 121 IDDS-PDSWPFHPENLIPIK 139 (148)
T ss_pred EECC-HHHhhcCccCEEEec
Confidence 9998 999999999997753
No 92
>PRK08238 hypothetical protein; Validated
Probab=99.50 E-value=1.9e-12 Score=119.44 Aligned_cols=104 Identities=22% Similarity=0.190 Sum_probs=84.3
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
+++||+.+++++++++|++++|+|++++. ++.+++++|+ ||.++++++....||+++.. .+.+.++ .++++++
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl---Fd~Vigsd~~~~~kg~~K~~-~l~~~l~--~~~~~yv 145 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL---FDGVFASDGTTNLKGAAKAA-ALVEAFG--ERGFDYA 145 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC---CCEEEeCCCccccCCchHHH-HHHHHhC--ccCeeEe
Confidence 46799999999999999999999999988 7999999988 89999999887777765543 3445665 3568999
Q ss_pred cCCchhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 249 GDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
||| .+|+.+++.+| +.+.|+.+.. +.+.++.
T Consensus 146 GDS-~~Dlp~~~~A~-~av~Vn~~~~-l~~~a~~ 176 (479)
T PRK08238 146 GNS-AADLPVWAAAR-RAIVVGASPG-VARAARA 176 (479)
T ss_pred cCC-HHHHHHHHhCC-CeEEECCCHH-HHHHHHH
Confidence 998 99999999999 8888887533 4444443
No 93
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.49 E-value=6e-13 Score=106.01 Aligned_cols=99 Identities=23% Similarity=0.335 Sum_probs=82.4
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCc--------c--------hHHHHHhcCCcCccceEEeccc-----CCCCCCCHH
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDT--------R--------LRPVLRALNCDHWFDAVAVSAE-----VEAEKPNPT 229 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~--------~--------~~~~l~~~gl~~~f~~~~~~~~-----~~~~KP~~~ 229 (287)
+.||+.+.+..|++.||+++++||.+- . ....|+..|.. |+.++.... ....||++.
T Consensus 32 ~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~--id~i~~Cph~p~~~c~cRKP~~g 109 (181)
T COG0241 32 FIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVK--IDGILYCPHHPEDNCDCRKPKPG 109 (181)
T ss_pred cCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCc--cceEEECCCCCCCCCcccCCChH
Confidence 569999999999999999999999431 1 23345555653 777777753 456899999
Q ss_pred HHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 230 IFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 230 ~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
++..+++++++++++.++|||. ..|+++|.++|+..+.+.++
T Consensus 110 m~~~~~~~~~iD~~~s~~VGD~-~~Dlq~a~n~gi~~~~~~~~ 151 (181)
T COG0241 110 MLLSALKEYNIDLSRSYVVGDR-LTDLQAAENAGIKGVLVLTG 151 (181)
T ss_pred HHHHHHHHhCCCccceEEecCc-HHHHHHHHHCCCCceEEEcC
Confidence 9999999999999999999996 99999999999999887765
No 94
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.49 E-value=8.1e-14 Score=120.37 Aligned_cols=109 Identities=14% Similarity=0.099 Sum_probs=72.5
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCc-----c-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCE
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDT-----R-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDA 245 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~-----~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~ 245 (287)
++++.++++.++..+..+.++++.+. . ...+.+..++...+...-..+-...+..|+..+..+++++|++++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~ 218 (272)
T PRK10530 139 FTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNV 218 (272)
T ss_pred eEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHe
Confidence 46677777777776666667776542 1 23344444543111100011223345567889999999999999999
Q ss_pred EEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 246 VHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 246 l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
++|||+ .||+.|++.+|+ ++.++++.+.+++.++.
T Consensus 219 i~~GD~-~NDi~m~~~ag~-~vamgna~~~lk~~Ad~ 253 (272)
T PRK10530 219 VAFGDN-FNDISMLEAAGL-GVAMGNADDAVKARADL 253 (272)
T ss_pred EEeCCC-hhhHHHHHhcCc-eEEecCchHHHHHhCCE
Confidence 999997 999999999997 56677765555555443
No 95
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.46 E-value=5.5e-13 Score=113.58 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=77.6
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceE------EecccCCCCCCCH---------HHHHH
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAV------AVSAEVEAEKPNP---------TIFLK 233 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~------~~~~~~~~~KP~~---------~~~~~ 233 (287)
.+.||+.++++.|+++|++++|+|++... +..+++.+|+.+.+..+ +..+.+..++|.| ..+..
T Consensus 121 ~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~~ 200 (277)
T TIGR01544 121 MLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVALR 200 (277)
T ss_pred ccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHHH
Confidence 37899999999999999999999999988 79999999987555544 3344555578777 77778
Q ss_pred HHHHcC--CCCCCEEEEcCCchhhHHHHHHc
Q 023114 234 ACDLLG--VKPEDAVHVGDDRRNDVWGARDA 262 (287)
Q Consensus 234 ~~~~l~--~~p~~~l~VGDs~~~Di~~a~~a 262 (287)
.++.++ .++++||+|||| .+|+.||...
T Consensus 201 ~~~~~~~~~~~~~vI~vGDs-~~Dl~ma~g~ 230 (277)
T TIGR01544 201 NTEYFNQLKDRSNIILLGDS-QGDLRMADGV 230 (277)
T ss_pred HHHHhCccCCcceEEEECcC-hhhhhHhcCC
Confidence 999998 899999999997 9999997765
No 96
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.40 E-value=2.9e-12 Score=106.86 Aligned_cols=178 Identities=13% Similarity=0.175 Sum_probs=110.7
Q ss_pred EEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCChhHHHHHHhccCCCCchHHH
Q 023114 76 ALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCSDSQYF 155 (287)
Q Consensus 76 ~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (287)
+|+||+|+||+|.+. -..+++.++......++...+.+ ..|.+.+. .....+.+.. . ..+.+
T Consensus 2 LvvfDFD~TIvd~ds-----d~~v~~~l~~~~~~~~l~~~~~~---~~wt~~m~-------~vl~~L~~~g--v-t~~~I 63 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDS-----DDWVIELLPPEELPEELRESYPK---GGWTEYMD-------RVLQLLHEQG--V-TPEDI 63 (234)
T ss_pred EEEEeCCCCccCCcc-----HHHHHHhcCCcccHHHHHHhccc---cchHHHHH-------HHHHHHHHcC--C-CHHHH
Confidence 689999999998543 44455666654434444333321 11111110 0111111111 1 12222
Q ss_pred HHHHHHHhhccccccCCccHHHHHHHHH--HcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEeccc----CCC-----
Q 023114 156 EELYNYYTTEKAWHLCDPEAEKVFKAIR--KAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAE----VEA----- 223 (287)
Q Consensus 156 ~~~~~~~~~~~~~~~~~pg~~~ll~~L~--~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~----~~~----- 223 (287)
.+.+ .. .++.||+.++++.+. ..|+.++|+|+++.. ++.+|+..|+.+.|+.+++..- .+.
T Consensus 64 ~~~l---~~----ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~p 136 (234)
T PF06888_consen 64 RDAL---RS----IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRP 136 (234)
T ss_pred HHHH---Hc----CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeC
Confidence 2222 11 337899999999994 469999999999988 7999999999999888776631 110
Q ss_pred -------CCC----CHHHHHHHHHH---cCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHH
Q 023114 224 -------EKP----NPTIFLKACDL---LGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEV 279 (287)
Q Consensus 224 -------~KP----~~~~~~~~~~~---l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el 279 (287)
.-| |..++...++. -|+..+++++||| +.||+.++...+-.-+...+....+..+
T Consensus 137 yh~h~C~~C~~NmCK~~il~~~~~~~~~~g~~~~rviYiGD-G~nD~Cp~~~L~~~D~v~~R~~~~l~~~ 205 (234)
T PF06888_consen 137 YHSHGCSLCPPNMCKGKILERLLQEQAQRGVPYDRVIYIGD-GRNDFCPALRLRPRDVVFPRKGYPLHKL 205 (234)
T ss_pred ccCCCCCcCCCccchHHHHHHHHHHHhhcCCCcceEEEECC-CCCCcCcccccCCCCEEecCCCChHHHH
Confidence 112 45566666665 3677899999999 5999999998776655555544444443
No 97
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.37 E-value=5.2e-11 Score=104.70 Aligned_cols=103 Identities=20% Similarity=0.278 Sum_probs=85.3
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhc-C-------CcCccceEEecccCC-----------------C
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRAL-N-------CDHWFDAVAVSAEVE-----------------A 223 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~-g-------l~~~f~~~~~~~~~~-----------------~ 223 (287)
..+||+.++|+.|+++|++++|+||++.. +..+++.+ | +.++||.++++..-+ .
T Consensus 184 ~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~~g~ 263 (343)
T TIGR02244 184 LRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVETGS 263 (343)
T ss_pred ccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCCCCc
Confidence 35799999999999999999999999988 78889986 7 899999998875411 0
Q ss_pred CCCCH-------HH-----HHHHHHHcCCCCCCEEEEcCCchhhHHHHH-HcCceEEEECCC
Q 023114 224 EKPNP-------TI-----FLKACDLLGVKPEDAVHVGDDRRNDVWGAR-DAGCDAWLWGSD 272 (287)
Q Consensus 224 ~KP~~-------~~-----~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~-~aG~~~i~v~~~ 272 (287)
.++.. .+ .....+.++++++++++|||+...|+..++ .+||++++|..+
T Consensus 264 ~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~pE 325 (343)
T TIGR02244 264 LKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIPE 325 (343)
T ss_pred ccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEchh
Confidence 11111 12 457788899999999999999999999998 999999999884
No 98
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=99.37 E-value=1.7e-11 Score=103.54 Aligned_cols=59 Identities=20% Similarity=0.359 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 224 EKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 224 ~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
+||++.++..+.++++++|++|+||||+...||..+++.|++++++.+|+++++++...
T Consensus 223 GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~ 281 (306)
T KOG2882|consen 223 GKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEA 281 (306)
T ss_pred CCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999999998765
No 99
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.36 E-value=1e-12 Score=111.24 Aligned_cols=89 Identities=28% Similarity=0.350 Sum_probs=60.9
Q ss_pred HcCCeEEEEeCCCcc--hHHHHHhcCCcCccceE---EecccCCCCCCCHHHHHHHHHHcCCCCCCE-EEEcCCchhhHH
Q 023114 184 KAGVKLAVVSNFDTR--LRPVLRALNCDHWFDAV---AVSAEVEAEKPNPTIFLKACDLLGVKPEDA-VHVGDDRRNDVW 257 (287)
Q Consensus 184 ~~g~~i~ivSn~~~~--~~~~l~~~gl~~~f~~~---~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~-l~VGDs~~~Di~ 257 (287)
++|-...++||.+.. ...-....+...+++.+ ........+||+|.+|..++++++++++++ ++|||+..+|+.
T Consensus 142 ~~~~~~~i~tN~d~~~~~~~g~~~~~~g~~~~~i~~~~g~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~ 221 (236)
T TIGR01460 142 AEGDVPFIAANRDDLVRLGDGRFRPGAGAIAAGIKELSGREPTVVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDIL 221 (236)
T ss_pred hCCCCeEEEECCCCCCCCCCCcEeecchHHHHHHHHHhCceeeeecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHH
Confidence 344246677885542 11111223444333322 222223468999999999999999998887 999998338999
Q ss_pred HHHHcCceEEEECCC
Q 023114 258 GARDAGCDAWLWGSD 272 (287)
Q Consensus 258 ~a~~aG~~~i~v~~~ 272 (287)
+|+++|+++++|.+|
T Consensus 222 ~A~~~G~~~i~v~~G 236 (236)
T TIGR01460 222 GAKNAGFDTLLVLTG 236 (236)
T ss_pred HHHHCCCcEEEEecC
Confidence 999999999998654
No 100
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=99.36 E-value=4.6e-11 Score=93.24 Aligned_cols=108 Identities=15% Similarity=0.214 Sum_probs=84.8
Q ss_pred HhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcchHHH-HH---hcCCcCccceEEecccCCCCCCCHHHHHHHHHH
Q 023114 162 YTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPV-LR---ALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDL 237 (287)
Q Consensus 162 ~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~-l~---~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~ 237 (287)
|.......++||++.+.++..++.|++++|.|+++-...+. +. ...+..+|+..+.... -.|-...-|..++..
T Consensus 95 y~sgelkahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDtti--G~KrE~~SY~kIa~~ 172 (229)
T COG4229 95 YESGELKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDTTI--GKKRESQSYAKIAGD 172 (229)
T ss_pred cccCccccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceeeccc--cccccchhHHHHHHh
Confidence 34444445799999999999999999999999998764333 32 2245555665554421 256677899999999
Q ss_pred cCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 238 LGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 238 l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
.|++|.+++|..|. ++.+.+|+.+|+.++++.++
T Consensus 173 iGl~p~eilFLSDn-~~EL~AA~~vGl~t~l~~R~ 206 (229)
T COG4229 173 IGLPPAEILFLSDN-PEELKAAAGVGLATGLAVRP 206 (229)
T ss_pred cCCCchheEEecCC-HHHHHHHHhcchheeeeecC
Confidence 99999999999997 99999999999999887654
No 101
>PTZ00445 p36-lilke protein; Provisional
Probab=99.35 E-value=4.2e-12 Score=102.54 Aligned_cols=101 Identities=21% Similarity=0.359 Sum_probs=80.8
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc----------------hHHHHHhcCCcCccceEEeccc-----------CCC
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR----------------LRPVLRALNCDHWFDAVAVSAE-----------VEA 223 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~----------------~~~~l~~~gl~~~f~~~~~~~~-----------~~~ 223 (287)
+.|+.+.++..|++.|++|+|||=++.. +...++.-+.+.-.+.+++... ++.
T Consensus 76 ~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl 155 (219)
T PTZ00445 76 VTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGL 155 (219)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcc
Confidence 4588999999999999999999965541 3455555555444445543322 366
Q ss_pred CCCCHHH--H--HHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 224 EKPNPTI--F--LKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 224 ~KP~~~~--~--~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
.||+|.+ | +.+++++|++|++++||+|+ ..++++|++.|+.++++.++
T Consensus 156 ~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~-~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 156 DAPMPLDKSYHLKQVCSDFNVNPDEILFIDDD-MNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred cCCCccchHHHHHHHHHHcCCCHHHeEeecCC-HHHHHHHHHCCCEEEEcCCh
Confidence 8999999 9 99999999999999999997 99999999999999998763
No 102
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.33 E-value=1.9e-12 Score=109.09 Aligned_cols=91 Identities=23% Similarity=0.298 Sum_probs=64.4
Q ss_pred EEEEeCCCcc-hHHHHHhcCCcCccceEE---ecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCc
Q 023114 189 LAVVSNFDTR-LRPVLRALNCDHWFDAVA---VSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGC 264 (287)
Q Consensus 189 i~ivSn~~~~-~~~~l~~~gl~~~f~~~~---~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~ 264 (287)
+.+.++.... +...++..+.. +.... ..+-...+..|+..+.++++.+|++++++++|||+ .||+.|++.+|+
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~-~NDi~m~~~ag~ 194 (230)
T PRK01158 118 VALRRTVPVEEVRELLEELGLD--LEIVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDS-ENDLEMFEVAGF 194 (230)
T ss_pred eeecccccHHHHHHHHHHcCCc--EEEEecceEEEEeeCCCChHHHHHHHHHHhCCCHHHEEEECCc-hhhHHHHHhcCc
Confidence 4444443333 56666665532 22111 12334456778999999999999999999999997 999999999997
Q ss_pred eEEEECCCCCCHHHHHHHh
Q 023114 265 DAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 265 ~~i~v~~~~~~~~el~~~l 283 (287)
. +++++..+.+++.++++
T Consensus 195 ~-vam~Na~~~vk~~a~~v 212 (230)
T PRK01158 195 G-VAVANADEELKEAADYV 212 (230)
T ss_pred e-EEecCccHHHHHhcceE
Confidence 5 56688777777776654
No 103
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.31 E-value=2.5e-10 Score=94.73 Aligned_cols=114 Identities=9% Similarity=0.005 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHhhccccc-cCCccHHHHHH-HHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecc----cCCC-
Q 023114 152 SQYFEELYNYYTTEKAWH-LCDPEAEKVFK-AIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSA----EVEA- 223 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~-~~~pg~~~ll~-~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~----~~~~- 223 (287)
.+.+++..+.|....... .++||+.++|+ +++++|++++||||++.. ++.+.+..++..- +.+++.+ +.+.
T Consensus 75 ~~~l~~~~~~f~~~~~~~~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~-~~~i~t~le~~~gg~~ 153 (210)
T TIGR01545 75 EAHLQDLEADFVAAFRDKVTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHR-LNLIASQIERGNGGWV 153 (210)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhcccccc-CcEEEEEeEEeCCceE
Confidence 334444444443322222 47899999995 788899999999999988 6888888655322 2333332 1111
Q ss_pred ------CCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECC
Q 023114 224 ------EKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGS 271 (287)
Q Consensus 224 ------~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~ 271 (287)
+.-|.. .+-+.++.+...+.+.||| .+|+.+...+| ..++|+.
T Consensus 154 ~g~~c~g~~Kv~---rl~~~~~~~~~~~~aYsDS-~~D~pmL~~a~-~~~~Vnp 202 (210)
T TIGR01545 154 LPLRCLGHEKVA---QLEQKIGSPLKLYSGYSDS-KQDNPLLAFCE-HRWRVSK 202 (210)
T ss_pred cCccCCChHHHH---HHHHHhCCChhheEEecCC-cccHHHHHhCC-CcEEECc
Confidence 111111 2223345566788999999 99999999999 4466555
No 104
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.30 E-value=3.8e-12 Score=100.94 Aligned_cols=104 Identities=21% Similarity=0.345 Sum_probs=74.5
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCC--CcchHHHHHhcCCc----------CccceEEecccCCCCCCCHHHHHHHHHH
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNF--DTRLRPVLRALNCD----------HWFDAVAVSAEVEAEKPNPTIFLKACDL 237 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~--~~~~~~~l~~~gl~----------~~f~~~~~~~~~~~~KP~~~~~~~~~~~ 237 (287)
.+||++.+.|+.|+.+|++++++|-. ++.+...|+.+++. ++|+..-... + .|..-|..+.++
T Consensus 45 ~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~----g-sK~~Hf~~i~~~ 119 (169)
T PF12689_consen 45 SLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYP----G-SKTTHFRRIHRK 119 (169)
T ss_dssp ---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESS----S--HHHHHHHHHHH
T ss_pred EeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheec----C-chHHHHHHHHHh
Confidence 37999999999999999999999943 33379999999999 8887754433 2 678899999999
Q ss_pred cCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHH
Q 023114 238 LGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVA 280 (287)
Q Consensus 238 l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~ 280 (287)
.|+++++.+||.|. ..++.-....|+.++++.+| -+++++.
T Consensus 120 tgI~y~eMlFFDDe-~~N~~~v~~lGV~~v~v~~G-lt~~~~~ 160 (169)
T PF12689_consen 120 TGIPYEEMLFFDDE-SRNIEVVSKLGVTCVLVPDG-LTWDEFE 160 (169)
T ss_dssp H---GGGEEEEES--HHHHHHHHTTT-EEEE-SSS---HHHHH
T ss_pred cCCChhHEEEecCc-hhcceeeEecCcEEEEeCCC-CCHHHHH
Confidence 99999999999996 88899999999999999995 3444443
No 105
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.27 E-value=3.2e-11 Score=104.12 Aligned_cols=58 Identities=33% Similarity=0.422 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 224 EKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 224 ~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
+-.|..++..+++.+|++++++++|||+ .||+.|.+.+|. ++++++..+.+++.++++
T Consensus 194 gvsKg~al~~l~~~~gi~~~~v~afGD~-~NDi~Ml~~ag~-~vAm~NA~~~vK~~A~~v 251 (270)
T PRK10513 194 RVNKGTGVKSLAEHLGIKPEEVMAIGDQ-ENDIAMIEYAGV-GVAMGNAIPSVKEVAQFV 251 (270)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEECCc-hhhHHHHHhCCc-eEEecCccHHHHHhcCee
Confidence 3456778899999999999999999997 999999999996 566688888888877665
No 106
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.26 E-value=1.4e-11 Score=103.44 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=64.9
Q ss_pred EEEeCCCcc-hHHHHHhcCCcCcc-ceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEE
Q 023114 190 AVVSNFDTR-LRPVLRALNCDHWF-DAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAW 267 (287)
Q Consensus 190 ~ivSn~~~~-~~~~l~~~gl~~~f-~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i 267 (287)
.+++..... +...++.++....+ ......+-...+.+|...+.++++++|++++++++|||+ .||+.|++.+|.. +
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~-~NDi~m~~~ag~~-v 188 (225)
T TIGR01482 111 KMRYGIDVDTVREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDS-ENDIDLFEVPGFG-V 188 (225)
T ss_pred EEeecCCHHHHHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCC-HhhHHHHHhcCce-E
Confidence 344433333 56677776653111 001122334567788999999999999999999999997 9999999999975 6
Q ss_pred EECCCCCCHHHHHHHh
Q 023114 268 LWGSDVHSFKEVAQRI 283 (287)
Q Consensus 268 ~v~~~~~~~~el~~~l 283 (287)
++++..+.+++.++.+
T Consensus 189 am~Na~~~~k~~A~~v 204 (225)
T TIGR01482 189 AVANAQPELKEWADYV 204 (225)
T ss_pred EcCChhHHHHHhcCee
Confidence 6688777777776654
No 107
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.23 E-value=1.5e-11 Score=84.91 Aligned_cols=58 Identities=34% Similarity=0.477 Sum_probs=53.6
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHH
Q 023114 223 AEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVA 280 (287)
Q Consensus 223 ~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~ 280 (287)
.+||+|.+|..++++++++|+++++|||+...||.+|+++|+.+|+|.+|..+.+++.
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~ 59 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLE 59 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHH
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHh
Confidence 4799999999999999999999999999779999999999999999999977766654
No 108
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.22 E-value=3.5e-11 Score=95.30 Aligned_cols=94 Identities=21% Similarity=0.314 Sum_probs=68.3
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCC---c----c--------hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHH
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFD---T----R--------LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKAC 235 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~---~----~--------~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~ 235 (287)
+.|++.+.|.+|.+.||+|+|+||.. . . +..+++.+++. +..++.......+||.+.++..++
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip--~~~~~a~~~d~~RKP~~GM~~~~~ 107 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIP--IQVYAAPHKDPCRKPNPGMWEFAL 107 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS---EEEEECGCSSTTSTTSSHHHHHHC
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCc--eEEEecCCCCCCCCCchhHHHHHH
Confidence 45789999999999999999999842 1 1 34456667775 444444445578999999999999
Q ss_pred HHcCC----CCCCEEEEcCC----------chhhHHHHHHcCceE
Q 023114 236 DLLGV----KPEDAVHVGDD----------RRNDVWGARDAGCDA 266 (287)
Q Consensus 236 ~~l~~----~p~~~l~VGDs----------~~~Di~~a~~aG~~~ 266 (287)
+.++. +.+++++|||. ...|..-|.++|++.
T Consensus 108 ~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f 152 (159)
T PF08645_consen 108 KDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKF 152 (159)
T ss_dssp CCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--E
T ss_pred HhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCcc
Confidence 99874 88999999993 157899999999874
No 109
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.22 E-value=2e-11 Score=101.88 Aligned_cols=90 Identities=20% Similarity=0.219 Sum_probs=63.8
Q ss_pred EEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEE
Q 023114 191 VVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLW 269 (287)
Q Consensus 191 ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v 269 (287)
++++.... +...++..++...+.. ...+-...+..|...+.++++++|++++++++|||+ .||++|++.+|+. +.+
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs-~ND~~ml~~ag~~-vam 188 (215)
T TIGR01487 112 MREGKDVDEVREIIKERGLNLVDSG-FAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDS-ENDIDLFRVVGFK-VAV 188 (215)
T ss_pred ecCCccHHHHHHHHHhCCeEEEecC-ceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCC-HHHHHHHHhCCCe-EEc
Confidence 33443333 5667777666433221 111223456677889999999999999999999997 9999999999966 555
Q ss_pred CCCCCCHHHHHHHh
Q 023114 270 GSDVHSFKEVAQRI 283 (287)
Q Consensus 270 ~~~~~~~~el~~~l 283 (287)
+++.+.+++.++++
T Consensus 189 ~na~~~~k~~A~~v 202 (215)
T TIGR01487 189 ANADDQLKEIADYV 202 (215)
T ss_pred CCccHHHHHhCCEE
Confidence 77777777776654
No 110
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.19 E-value=1.9e-10 Score=99.48 Aligned_cols=53 Identities=11% Similarity=-0.017 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHcCCCC-CCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHH
Q 023114 222 EAEKPNPTIFLKACDLLGVKP-EDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFK 277 (287)
Q Consensus 222 ~~~KP~~~~~~~~~~~l~~~p-~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~ 277 (287)
..+ .|...+..+++.+|+++ +++++|||+ .||+.|++.+|.. +.+++..+..+
T Consensus 187 ~~~-~Kg~al~~l~~~~~i~~~~~v~~~GDs-~NDi~m~~~ag~~-vam~NA~~~~k 240 (273)
T PRK00192 187 GGG-DKGKAVRWLKELYRRQDGVETIALGDS-PNDLPMLEAADIA-VVVPGPDGPNP 240 (273)
T ss_pred CCC-CHHHHHHHHHHHHhccCCceEEEEcCC-hhhHHHHHhCCee-EEeCCCCCCCc
Confidence 344 67789999999999999 999999997 9999999999966 45577666666
No 111
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.15 E-value=2.2e-10 Score=93.57 Aligned_cols=86 Identities=17% Similarity=0.318 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCc--cceEEeccc-C---C--CCC---CCHHHHHHH---HHH
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHW--FDAVAVSAE-V---E--AEK---PNPTIFLKA---CDL 237 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~--f~~~~~~~~-~---~--~~K---P~~~~~~~~---~~~ 237 (287)
|++.++++.++++|++++|+|+++.. +..+++.+|+... +..-+..+. . + .+. -|...+..+ ...
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~ 171 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRDEE 171 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHhhc
Confidence 45559999999999999999999888 7999999998752 222221100 0 0 000 155666666 444
Q ss_pred cCCCCCCEEEEcCCchhhHHHHH
Q 023114 238 LGVKPEDAVHVGDDRRNDVWGAR 260 (287)
Q Consensus 238 l~~~p~~~l~VGDs~~~Di~~a~ 260 (287)
+.++..+++|||| .+|+.+++
T Consensus 172 -~~~~~~~~~iGDs-~~D~~~lr 192 (192)
T PF12710_consen 172 -DIDPDRVIAIGDS-INDLPMLR 192 (192)
T ss_dssp -THTCCEEEEEESS-GGGHHHHH
T ss_pred -CCCCCeEEEEECC-HHHHHHhC
Confidence 7888999999998 99999875
No 112
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.14 E-value=4e-10 Score=89.07 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=68.5
Q ss_pred CccHHHHHHHHHHcCC--eEEEEeCCC-------cc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCC-
Q 023114 172 DPEAEKVFKAIRKAGV--KLAVVSNFD-------TR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGV- 240 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~--~i~ivSn~~-------~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~- 240 (287)
.|.+.+.++++++.+. +++|+||+. .. ++.+-+.+|+. .+.. ...|| ..+..+++.++.
T Consensus 61 ~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp----vl~h----~~kKP--~~~~~i~~~~~~~ 130 (168)
T PF09419_consen 61 PPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP----VLRH----RAKKP--GCFREILKYFKCQ 130 (168)
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc----EEEe----CCCCC--ccHHHHHHHHhhc
Confidence 3556666777777754 599999973 22 56677777854 2211 14566 667777777754
Q ss_pred ----CCCCEEEEcCCchhhHHHHHHcCceEEEECCCC
Q 023114 241 ----KPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDV 273 (287)
Q Consensus 241 ----~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~ 273 (287)
+|+++++|||-.-.|+.+|+..|+.+|++..|+
T Consensus 131 ~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~gv 167 (168)
T PF09419_consen 131 KVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDGV 167 (168)
T ss_pred cCCCCchhEEEEcchHHHHHHHhhccCceEEEEecCc
Confidence 599999999999999999999999999998875
No 113
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.13 E-value=1.4e-09 Score=92.72 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=65.6
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc----hHHHHHhcCCcCc-cceEEecccCCCCCCCHHHHHHHHHHcCCCCCCE
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR----LRPVLRALNCDHW-FDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDA 245 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~----~~~~l~~~gl~~~-f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~ 245 (287)
++||+.++++.|+++|++++++||.+.. ....++.+|+... ++.++..++ .++|+.....+.+.+++ +
T Consensus 119 ~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~---~~~K~~rr~~I~~~y~I----v 191 (266)
T TIGR01533 119 PVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKD---KSSKESRRQKVQKDYEI----V 191 (266)
T ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCC---CCCcHHHHHHHHhcCCE----E
Confidence 6899999999999999999999998744 3578889999764 456665543 35777888888887777 8
Q ss_pred EEEcCCchhhHHHH
Q 023114 246 VHVGDDRRNDVWGA 259 (287)
Q Consensus 246 l~VGDs~~~Di~~a 259 (287)
++|||+ .+|+...
T Consensus 192 l~vGD~-~~Df~~~ 204 (266)
T TIGR01533 192 LLFGDN-LLDFDDF 204 (266)
T ss_pred EEECCC-HHHhhhh
Confidence 999997 9999654
No 114
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.12 E-value=5.9e-10 Score=95.95 Aligned_cols=61 Identities=25% Similarity=0.321 Sum_probs=52.2
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 221 VEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 221 ~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
...+..|..++..+++++|++++++++|||+ .||+.|.+.+|.. +++++..+.++++++++
T Consensus 184 ~~~g~~K~~al~~l~~~lgi~~~~v~afGD~-~ND~~Ml~~ag~g-vam~Na~~~~k~~A~~v 244 (264)
T COG0561 184 TPKGVSKGYALQRLAKLLGIKLEEVIAFGDS-TNDIEMLEVAGLG-VAMGNADEELKELADYV 244 (264)
T ss_pred ecCCCchHHHHHHHHHHhCCCHHHeEEeCCc-cccHHHHHhcCee-eeccCCCHHHHhhCCcc
Confidence 3457778899999999999999999999997 9999999999955 55688788888887744
No 115
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.11 E-value=3.2e-09 Score=93.90 Aligned_cols=54 Identities=28% Similarity=0.317 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHc--------CC-----CCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCC
Q 023114 222 EAEKPNPTIFLKACDLL--------GV-----KPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHS 275 (287)
Q Consensus 222 ~~~KP~~~~~~~~~~~l--------~~-----~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~ 275 (287)
..+||++.+|+.+++.+ ++ ++++++||||+..+||.+|+++||.+++|.+|+.+
T Consensus 230 ~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~ 296 (321)
T TIGR01456 230 TLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYN 296 (321)
T ss_pred EcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccC
Confidence 45999999999999887 43 44799999999669999999999999999987443
No 116
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.11 E-value=6.4e-11 Score=90.41 Aligned_cols=91 Identities=22% Similarity=0.302 Sum_probs=72.5
Q ss_pred HHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHH
Q 023114 179 FKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVW 257 (287)
Q Consensus 179 l~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~ 257 (287)
++.|.+.|++++|+|+.... ++...+.+|+...|-. .+.|...|..+++++++.+++|.+|||+ .+|+.
T Consensus 44 ik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG---------~~dK~~a~~~L~~~~~l~~e~~ayiGDD-~~Dlp 113 (170)
T COG1778 44 IKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQG---------ISDKLAAFEELLKKLNLDPEEVAYVGDD-LVDLP 113 (170)
T ss_pred HHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeeec---------hHhHHHHHHHHHHHhCCCHHHhhhhcCc-cccHH
Confidence 45567889999999999888 7999999999765422 3456789999999999999999999998 99999
Q ss_pred HHHHcCceEEEECCCCCCHHHHH
Q 023114 258 GARDAGCDAWLWGSDVHSFKEVA 280 (287)
Q Consensus 258 ~a~~aG~~~i~v~~~~~~~~el~ 280 (287)
..+..|+.++ +.+....+.+.+
T Consensus 114 vm~~vGls~a-~~dAh~~v~~~a 135 (170)
T COG1778 114 VMEKVGLSVA-VADAHPLLKQRA 135 (170)
T ss_pred HHHHcCCccc-ccccCHHHHHhh
Confidence 9999998754 344343344333
No 117
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.08 E-value=4e-10 Score=96.00 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=53.3
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHH
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPT 229 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~ 229 (287)
.||+.++|++|+++|++++|+||+.+. +...++.+|+..+|+.++++.+....||+++
T Consensus 148 dPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~Gdv~~~kp~~e 206 (301)
T TIGR01684 148 DPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIIISGGHKAEEYSTMS 206 (301)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEECCccccCCCCcc
Confidence 389999999999999999999999888 7899999999999999999999888877764
No 118
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.07 E-value=4.3e-10 Score=97.21 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=50.6
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHH
Q 023114 221 VEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQ 281 (287)
Q Consensus 221 ~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~ 281 (287)
...+-.|...+.++++.+|++++++++|||+ .||+.|.+.+|. ++++++..+.+++.++
T Consensus 183 ~~~g~sKg~al~~l~~~~gi~~~~v~afGD~-~NDi~Ml~~ag~-~vAm~Na~~~vK~~A~ 241 (272)
T PRK15126 183 LPVGCNKGAALAVLSQHLGLSLADCMAFGDA-MNDREMLGSVGR-GFIMGNAMPQLRAELP 241 (272)
T ss_pred ecCCCChHHHHHHHHHHhCCCHHHeEEecCC-HHHHHHHHHcCC-ceeccCChHHHHHhCC
Confidence 3456678899999999999999999999997 999999999995 5777887777777655
No 119
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=99.03 E-value=8.1e-09 Score=88.12 Aligned_cols=91 Identities=12% Similarity=0.108 Sum_probs=66.1
Q ss_pred CCeEEEEeCCCc--c----hHHHHHhcCCcCccceEEec----ccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhh
Q 023114 186 GVKLAVVSNFDT--R----LRPVLRALNCDHWFDAVAVS----AEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRND 255 (287)
Q Consensus 186 g~~i~ivSn~~~--~----~~~~l~~~gl~~~f~~~~~~----~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~D 255 (287)
-+++.++..... . +...+...|+. +..+.++ +....+.+|..++..+++.+|++++++++|||+ .||
T Consensus 119 ~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~ldi~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~-~ND 195 (249)
T TIGR01485 119 PHKVSFFLDPEAAPEVIKQLTEMLKETGLD--VKLIYSSGKDLDILPQGSGKGQALQYLLQKLAMEPSQTLVCGDS-GND 195 (249)
T ss_pred CeeEEEEechhhhhHHHHHHHHHHHhcCCC--EEEEEECCceEEEEeCCCChHHHHHHHHHHcCCCccCEEEEECC-hhH
Confidence 467777665432 1 23344444443 2333333 345578899999999999999999999999997 999
Q ss_pred HHHHHHcCceEEEECCCCCCHHHH
Q 023114 256 VWGARDAGCDAWLWGSDVHSFKEV 279 (287)
Q Consensus 256 i~~a~~aG~~~i~v~~~~~~~~el 279 (287)
+.|.+.+|..++++++....+++.
T Consensus 196 ~~ml~~~~~~~va~~na~~~~k~~ 219 (249)
T TIGR01485 196 IELFEIGSVRGVIVSNAQEELLQW 219 (249)
T ss_pred HHHHHccCCcEEEECCCHHHHHHH
Confidence 999999887889999866666543
No 120
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=99.03 E-value=4.1e-10 Score=89.88 Aligned_cols=50 Identities=42% Similarity=0.636 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 223 AEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 223 ~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
.+||+|..|+.+++.+|++|++++||||+...|+.+|++.||+.|.|.+|
T Consensus 179 vGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTG 228 (262)
T KOG3040|consen 179 VGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTG 228 (262)
T ss_pred ecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeecc
Confidence 58999999999999999999999999999889999999999999999886
No 121
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.02 E-value=1.4e-09 Score=87.65 Aligned_cols=102 Identities=20% Similarity=0.227 Sum_probs=71.9
Q ss_pred cCCccHHHHHHHHHHcCC-eEEEEeCCCcc-hHHHHHhcCCcCccceEEecccC----CC-------------CCC----
Q 023114 170 LCDPEAEKVFKAIRKAGV-KLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEV----EA-------------EKP---- 226 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~-~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~----~~-------------~KP---- 226 (287)
+..||+.++++.+++.|. .+.|||+++.. ++.+|+.+|+.+.|+.+++.... +. .-|
T Consensus 84 P~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmC 163 (256)
T KOG3120|consen 84 PIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMC 163 (256)
T ss_pred CCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhh
Confidence 367999999999999985 99999999888 79999999999999877665321 10 112
Q ss_pred CHHHHHHHHHH-c--CCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 227 NPTIFLKACDL-L--GVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 227 ~~~~~~~~~~~-l--~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
|.-++...... + |+.-++.++|||+ .||+.......-.-++..+.
T Consensus 164 Kg~Vl~~~~~s~~~~gv~yer~iYvGDG-~nD~CP~l~Lr~~D~ampRk 211 (256)
T KOG3120|consen 164 KGLVLDELVASQLKDGVRYERLIYVGDG-ANDFCPVLRLRACDVAMPRK 211 (256)
T ss_pred hhHHHHHHHHHHhhcCCceeeEEEEcCC-CCCcCcchhcccCceecccC
Confidence 22233333322 2 6777899999995 99997766554443444443
No 122
>PRK10976 putative hydrolase; Provisional
Probab=99.01 E-value=7.5e-10 Score=95.37 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=51.1
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHH
Q 023114 221 VEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQ 281 (287)
Q Consensus 221 ~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~ 281 (287)
...+-.|...+..+++.+|++++++++|||+ .||+.|.+.+|. ++++++..+.+++.++
T Consensus 185 ~~~gvsKg~al~~l~~~lgi~~~~viafGD~-~NDi~Ml~~ag~-~vAm~NA~~~vK~~A~ 243 (266)
T PRK10976 185 MAGGVSKGHALEAVAKKLGYSLKDCIAFGDG-MNDAEMLSMAGK-GCIMGNAHQRLKDLLP 243 (266)
T ss_pred EcCCCChHHHHHHHHHHcCCCHHHeEEEcCC-cccHHHHHHcCC-CeeecCCcHHHHHhCC
Confidence 3456678999999999999999999999997 999999999996 4666888888888765
No 123
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.96 E-value=1.1e-08 Score=85.62 Aligned_cols=44 Identities=14% Similarity=-0.049 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEE
Q 023114 223 AEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAW 267 (287)
Q Consensus 223 ~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i 267 (287)
.+-.|+..+..+++++|++++++++|||+ .||+.|.+.+|...+
T Consensus 176 ~~~~Kg~al~~l~~~lgi~~~~vi~~GD~-~NDi~ml~~ag~~va 219 (221)
T TIGR02463 176 ASSSKGKAANWLKATYNQPDVKTLGLGDG-PNDLPLLEVADYAVV 219 (221)
T ss_pred CCCCHHHHHHHHHHHhCCCCCcEEEECCC-HHHHHHHHhCCceEE
Confidence 34456778999999999999999999997 999999999996643
No 124
>PLN02887 hydrolase family protein
Probab=98.94 E-value=3.1e-09 Score=100.06 Aligned_cols=61 Identities=23% Similarity=0.239 Sum_probs=53.6
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 221 VEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 221 ~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
+..+-.|..++..+++.+|++++++++|||+ .||++|.+.+|. ++++++..+.+++.++++
T Consensus 502 ~p~gvSKG~ALk~L~e~lGI~~eeviAFGDs-~NDIeMLe~AG~-gVAMgNA~eeVK~~Ad~V 562 (580)
T PLN02887 502 VPPGTSKGNGVKMLLNHLGVSPDEIMAIGDG-ENDIEMLQLASL-GVALSNGAEKTKAVADVI 562 (580)
T ss_pred ecCCCCHHHHHHHHHHHcCCCHHHEEEEecc-hhhHHHHHHCCC-EEEeCCCCHHHHHhCCEE
Confidence 4456778899999999999999999999997 999999999996 577799888888887765
No 125
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.94 E-value=4.5e-09 Score=89.05 Aligned_cols=57 Identities=25% Similarity=0.327 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 224 EKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 224 ~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
.-.|..++..+++.+|++++++++|||+ .||+.|.+.+|.. +.+++..+.+++.++.
T Consensus 184 ~vsK~~ai~~l~~~~~i~~~~~~~~GD~-~ND~~Ml~~~~~~-~am~na~~~~k~~a~~ 240 (254)
T PF08282_consen 184 GVSKGSAIKYLLEYLGISPEDIIAFGDS-ENDIEMLELAGYS-VAMGNATPELKKAADY 240 (254)
T ss_dssp TSSHHHHHHHHHHHHTTSGGGEEEEESS-GGGHHHHHHSSEE-EEETTS-HHHHHHSSE
T ss_pred CCCHHHHHHHHhhhcccccceeEEeecc-cccHhHHhhcCeE-EEEcCCCHHHHHhCCE
Confidence 3447778899999999999999999998 9999999999955 6668866666665544
No 126
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.93 E-value=7.7e-10 Score=88.02 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=89.8
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcC-ccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDH-WFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~-~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
..||+.++|++|.+. +.++|.|++++. +..+++.++... +|+.+++.++....+|+ |.+.++.+|.+++++|+|
T Consensus 43 ~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~vIiV 118 (162)
T TIGR02251 43 KRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSKVIII 118 (162)
T ss_pred ECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhhEEEE
Confidence 569999999999988 999999999988 799999999875 88999999888777776 778888999999999999
Q ss_pred cCCchhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 249 GDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
||+ +.|+.++.++|+....+.+. .+=++|.++
T Consensus 119 DD~-~~~~~~~~~NgI~i~~f~~~-~~D~~L~~l 150 (162)
T TIGR02251 119 DNS-PYSYSLQPDNAIPIKSWFGD-PNDTELLNL 150 (162)
T ss_pred eCC-hhhhccCccCEeecCCCCCC-CCHHHHHHH
Confidence 997 99999999999998776643 333344443
No 127
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.86 E-value=1.7e-08 Score=86.26 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=64.1
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCC---------------------------
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAE--------------------------- 224 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~--------------------------- 224 (287)
|++.++|++|+++|++++|+||+++. +...++.+|+..+|+.++++++....
T Consensus 151 p~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~~~ 230 (303)
T PHA03398 151 PFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVTDV 230 (303)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccccEEEECCCcccccccceeecccceeEEecCceeEeCCcc
Confidence 89999999999999999999999888 79999999999999998888763321
Q ss_pred --CC-CHHHHHHHHHHcCCCCCCEE-EEcC
Q 023114 225 --KP-NPTIFLKACDLLGVKPEDAV-HVGD 250 (287)
Q Consensus 225 --KP-~~~~~~~~~~~l~~~p~~~l-~VGD 250 (287)
-| +|....+.+++.|+..-+++ .|.|
T Consensus 231 ~~lPKSprvVl~yL~~~gvn~~KtiTLVDD 260 (303)
T PHA03398 231 KNLPKSPRVVLWYLRKKGVNYFKTITLVDD 260 (303)
T ss_pred cCCCCCCeehHHHHHHcCcceeccEEEecc
Confidence 11 57778899999999776555 4555
No 128
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=3.9e-08 Score=77.18 Aligned_cols=89 Identities=15% Similarity=0.182 Sum_probs=63.2
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceE-----------------EecccCCCCCCCHHHHH
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAV-----------------AVSAEVEAEKPNPTIFL 232 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~-----------------~~~~~~~~~KP~~~~~~ 232 (287)
+.||.+++++..+.++++++|+|++... +..+++..+-.+-.+++ +.-++...+--|+
T Consensus 74 Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~---- 149 (220)
T COG4359 74 IDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKS---- 149 (220)
T ss_pred cCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcc----
Confidence 6899999999999999999999999888 68888887632222221 1112211222222
Q ss_pred HHHHHcCCCCCCEEEEcCCchhhHHHHHHcCc
Q 023114 233 KACDLLGVKPEDAVHVGDDRRNDVWGARDAGC 264 (287)
Q Consensus 233 ~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~ 264 (287)
..+..+.-+++.++++||| ..|+.+|+..-.
T Consensus 150 ~vI~~l~e~~e~~fy~GDs-vsDlsaaklsDl 180 (220)
T COG4359 150 SVIHELSEPNESIFYCGDS-VSDLSAAKLSDL 180 (220)
T ss_pred hhHHHhhcCCceEEEecCC-cccccHhhhhhh
Confidence 2455566677889999997 999999987653
No 129
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.85 E-value=2.4e-08 Score=85.51 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=48.5
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 222 EAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 222 ~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
..+-.|...+..+++.+|++++++++|||+ .||+.|++.+|+..++ ++..+.+++.++.
T Consensus 184 ~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~-~nD~~m~~~~~~~~a~-~na~~~~k~~a~~ 242 (256)
T TIGR00099 184 AKGVSKGSALQSLAEALGISLEDVIAFGDG-MNDIEMLEAAGYGVAM-GNADEELKALADY 242 (256)
T ss_pred CCCCChHHHHHHHHHHcCCCHHHEEEeCCc-HHhHHHHHhCCceeEe-cCchHHHHHhCCE
Confidence 456678999999999999999999999997 9999999999976544 6655555555543
No 130
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.84 E-value=4.5e-08 Score=82.82 Aligned_cols=92 Identities=13% Similarity=0.074 Sum_probs=66.6
Q ss_pred CCeEEEEeCCCc--c---hHHHHHhcCCcCccceEEec----ccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhH
Q 023114 186 GVKLAVVSNFDT--R---LRPVLRALNCDHWFDAVAVS----AEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDV 256 (287)
Q Consensus 186 g~~i~ivSn~~~--~---~~~~l~~~gl~~~f~~~~~~----~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di 256 (287)
.+++.+...... . +...++..+.. +..+.++ +-...+.+|+.++..+++++|++++++++|||+ .||+
T Consensus 112 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~ei~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~-~nD~ 188 (236)
T TIGR02471 112 PFKISYLLDPEGEPILPQIRQRLRQQSQA--AKVILSCGWFLDVLPLRASKGLALRYLSYRWGLPLEQILVAGDS-GNDE 188 (236)
T ss_pred CeeEEEEECcccchHHHHHHHHHHhccCC--EEEEEECCceEEEeeCCCChHHHHHHHHHHhCCCHHHEEEEcCC-ccHH
Confidence 366776654421 1 34444544432 2333343 345567899999999999999999999999998 9999
Q ss_pred HHHHHcCceEEEECCCCCCHHHHHH
Q 023114 257 WGARDAGCDAWLWGSDVHSFKEVAQ 281 (287)
Q Consensus 257 ~~a~~aG~~~i~v~~~~~~~~el~~ 281 (287)
.|.+.+| .++.+++..+.+++.++
T Consensus 189 ~ml~~~~-~~iav~na~~~~k~~a~ 212 (236)
T TIGR02471 189 EMLRGLT-LGVVVGNHDPELEGLRH 212 (236)
T ss_pred HHHcCCC-cEEEEcCCcHHHHHhhc
Confidence 9999999 55677887777777766
No 131
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.83 E-value=3e-08 Score=85.67 Aligned_cols=51 Identities=10% Similarity=-0.100 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHcCC---CCCCEEEEcCCchhhHHHHHHcCceEEEECCCC
Q 023114 221 VEAEKPNPTIFLKACDLLGV---KPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDV 273 (287)
Q Consensus 221 ~~~~KP~~~~~~~~~~~l~~---~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~ 273 (287)
...+-.|..++..+++.+|+ +++++++|||+ .||+.|.+.+|.. +++++..
T Consensus 182 ~~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs-~NDi~Ml~~ag~g-vAM~~~~ 235 (271)
T PRK03669 182 LDASAGKDQAANWLIATYQQLSGTRPTTLGLGDG-PNDAPLLDVMDYA-VVVKGLN 235 (271)
T ss_pred ecCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCC-HHHHHHHHhCCEE-EEecCCC
Confidence 44577788999999999999 99999999997 9999999999965 5556433
No 132
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.83 E-value=1.1e-08 Score=86.94 Aligned_cols=88 Identities=17% Similarity=0.199 Sum_probs=74.6
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hH--HHHHhcCCcC-ccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEE
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LR--PVLRALNCDH-WFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAV 246 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~--~~l~~~gl~~-~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l 246 (287)
++||+.++|+.|+++|++++++||.++. .. ..++.+|+.. +|+.++++.+... ..+..++++++.+|++++
T Consensus 25 ~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~-----~~l~~~~~~~~~~~~~~~ 99 (242)
T TIGR01459 25 TYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSGEIAV-----QMILESKKRFDIRNGIIY 99 (242)
T ss_pred cCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccHHHHH-----HHHHhhhhhccCCCceEE
Confidence 5799999999999999999999998776 34 7899999987 8999999876543 467777788899999999
Q ss_pred EEcCCchhhHHHHHHcCc
Q 023114 247 HVGDDRRNDVWGARDAGC 264 (287)
Q Consensus 247 ~VGDs~~~Di~~a~~aG~ 264 (287)
+|||+ ..|+......|.
T Consensus 100 ~vGd~-~~d~~~~~~~~~ 116 (242)
T TIGR01459 100 LLGHL-ENDIINLMQCYT 116 (242)
T ss_pred EeCCc-ccchhhhcCCCc
Confidence 99996 889987766664
No 133
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.83 E-value=1.6e-08 Score=95.58 Aligned_cols=88 Identities=20% Similarity=0.227 Sum_probs=72.8
Q ss_pred cCCccHHHHHHHHHHcCC-eEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEE
Q 023114 170 LCDPEAEKVFKAIRKAGV-KLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVH 247 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~-~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~ 247 (287)
.++||+.+++++|+++|+ +++++||.+.. ...+++++|++++|..+. +++| ..++++++.+++++++
T Consensus 362 ~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~~~~-------p~~K----~~~i~~l~~~~~~v~~ 430 (536)
T TIGR01512 362 EPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAELL-------PEDK----LEIVKELREKYGPVAM 430 (536)
T ss_pred cchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhhccC-------cHHH----HHHHHHHHhcCCEEEE
Confidence 578999999999999999 99999999888 799999999988775432 2233 3456666666789999
Q ss_pred EcCCchhhHHHHHHcCceEEEEC
Q 023114 248 VGDDRRNDVWGARDAGCDAWLWG 270 (287)
Q Consensus 248 VGDs~~~Di~~a~~aG~~~i~v~ 270 (287)
|||+ .||+.+++.||+ .+.++
T Consensus 431 vGDg-~nD~~al~~A~v-gia~g 451 (536)
T TIGR01512 431 VGDG-INDAPALAAADV-GIAMG 451 (536)
T ss_pred EeCC-HHHHHHHHhCCE-EEEeC
Confidence 9996 999999999996 66666
No 134
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=98.80 E-value=1.3e-08 Score=96.71 Aligned_cols=90 Identities=21% Similarity=0.243 Sum_probs=72.1
Q ss_pred cCCccHHHHHHHHHHcC-CeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEE
Q 023114 170 LCDPEAEKVFKAIRKAG-VKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVH 247 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g-~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~ 247 (287)
.++||+++++++|+++| ++++++||.+.. +..+++++|++++|+.+ .+++|+ .++++++..++++++
T Consensus 384 ~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~~~-------~p~~K~----~~v~~l~~~~~~v~~ 452 (556)
T TIGR01525 384 QLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHAEL-------LPEDKL----AIVKELQEEGGVVAM 452 (556)
T ss_pred cchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeeccC-------CHHHHH----HHHHHHHHcCCEEEE
Confidence 57899999999999999 999999999888 79999999998777643 122333 355555556789999
Q ss_pred EcCCchhhHHHHHHcCceEEEECCC
Q 023114 248 VGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 248 VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
|||+ .||+.++++||+ .+.++++
T Consensus 453 vGDg-~nD~~al~~A~v-gia~g~~ 475 (556)
T TIGR01525 453 VGDG-INDAPALAAADV-GIAMGAG 475 (556)
T ss_pred EECC-hhHHHHHhhCCE-eEEeCCC
Confidence 9996 999999999995 4555643
No 135
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.76 E-value=1e-07 Score=69.52 Aligned_cols=82 Identities=18% Similarity=0.124 Sum_probs=58.3
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc----hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEE
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR----LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAV 246 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~----~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l 246 (287)
++||+.++++.|+++|.+++++||.+.. ....|+.+|+.--.+.++++.. .....+++. -...+++
T Consensus 15 ~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~---------~~~~~l~~~-~~~~~v~ 84 (101)
T PF13344_consen 15 PIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGM---------AAAEYLKEH-KGGKKVY 84 (101)
T ss_dssp E-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHH---------HHHHHHHHH-TTSSEEE
T ss_pred cCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHH---------HHHHHHHhc-CCCCEEE
Confidence 4699999999999999999999997643 5777889999765677776643 333444442 2356788
Q ss_pred EEcCCchhhHHHHHHcCc
Q 023114 247 HVGDDRRNDVWGARDAGC 264 (287)
Q Consensus 247 ~VGDs~~~Di~~a~~aG~ 264 (287)
++|- .......+.+|+
T Consensus 85 vlG~--~~l~~~l~~~G~ 100 (101)
T PF13344_consen 85 VLGS--DGLREELREAGF 100 (101)
T ss_dssp EES---HHHHHHHHHTTE
T ss_pred EEcC--HHHHHHHHHcCC
Confidence 9995 677888888886
No 136
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.70 E-value=3.6e-08 Score=93.61 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=69.9
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
.++||+.+++++|+++|++++++||.++. +..+++.+|++ +|. +. .+++|++ .++++..+++++++|
T Consensus 405 ~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~-~~~-----~~--~p~~K~~----~v~~l~~~~~~v~~V 472 (562)
T TIGR01511 405 QLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN-VRA-----EV--LPDDKAA----LIKELQEKGRVVAMV 472 (562)
T ss_pred cccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc-EEc-----cC--ChHHHHH----HHHHHHHcCCEEEEE
Confidence 57899999999999999999999999888 79999999995 222 11 2233443 444444467899999
Q ss_pred cCCchhhHHHHHHcCceEEEECCC
Q 023114 249 GDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
||+ .||+.+++.||+ .+.++.+
T Consensus 473 GDg-~nD~~al~~A~v-gia~g~g 494 (562)
T TIGR01511 473 GDG-INDAPALAQADV-GIAIGAG 494 (562)
T ss_pred eCC-CccHHHHhhCCE-EEEeCCc
Confidence 996 999999999997 4666764
No 137
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.67 E-value=1.1e-07 Score=94.33 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=74.8
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
+++||+.+.+++|++.|++++++|+.+.. ...+++.+|+.++|..+. |+.-..++++++.+++++++|
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~~~~~~~-----------p~~K~~~i~~l~~~~~~v~~v 718 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVL-----------PDGKAEAIKRLQSQGRQVAMV 718 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCEEEeCCC-----------HHHHHHHHHHHhhcCCEEEEE
Confidence 56899999999999999999999998887 689999999976554321 233456777888888899999
Q ss_pred cCCchhhHHHHHHcCceEEEECCC
Q 023114 249 GDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
||+ .||+.+++.||+ .+.++++
T Consensus 719 GDg-~nD~~al~~Agv-gia~g~g 740 (834)
T PRK10671 719 GDG-INDAPALAQADV-GIAMGGG 740 (834)
T ss_pred eCC-HHHHHHHHhCCe-eEEecCC
Confidence 996 999999999998 6677775
No 138
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.65 E-value=5.4e-08 Score=72.06 Aligned_cols=82 Identities=24% Similarity=0.414 Sum_probs=63.6
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEe-CCCcchHHHHHhcCCcCccceEEecccCCCCCCCH---HHHHHHHHHc------C
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVS-NFDTRLRPVLRALNCDHWFDAVAVSAEVEAEKPNP---TIFLKACDLL------G 239 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivS-n~~~~~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~---~~~~~~~~~l------~ 239 (287)
.++|+++++++.+++.|+-+...| |.+...-..|+.+++..+|+.++.. |+| .++-++++.+ -
T Consensus 41 ~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~Vie-------PhP~K~~ML~~llr~i~~er~~~ 113 (164)
T COG4996 41 HLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVIE-------PHPYKFLMLSQLLREINTERNQK 113 (164)
T ss_pred EEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEec-------CCChhHHHHHHHHHHHHHhhccc
Confidence 478999999999999999999999 5655588899999999999988753 333 3455555554 4
Q ss_pred CCCCCEEEEcCCchhhHHHH
Q 023114 240 VKPEDAVHVGDDRRNDVWGA 259 (287)
Q Consensus 240 ~~p~~~l~VGDs~~~Di~~a 259 (287)
++|+++++++|- .--+.-.
T Consensus 114 ikP~~Ivy~DDR-~iH~~~I 132 (164)
T COG4996 114 IKPSEIVYLDDR-RIHFGNI 132 (164)
T ss_pred cCcceEEEEecc-cccHHHH
Confidence 799999999994 5544433
No 139
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.65 E-value=1.9e-07 Score=80.02 Aligned_cols=57 Identities=14% Similarity=-0.029 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHcCCC--CCCEEEEcCCchhhHHHHHHcCceEEEECCCC---CCHHHH
Q 023114 221 VEAEKPNPTIFLKACDLLGVK--PEDAVHVGDDRRNDVWGARDAGCDAWLWGSDV---HSFKEV 279 (287)
Q Consensus 221 ~~~~KP~~~~~~~~~~~l~~~--p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~---~~~~el 279 (287)
...+-.|...+..+++.+|++ ++++++|||+ .||+.|.+.+|.. +++++.. ..+++.
T Consensus 171 ~~~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~-~ND~~Ml~~ag~~-vam~Na~~~~~~lk~~ 232 (256)
T TIGR01486 171 LGAGSDKGKAANALKQFYNQPGGAIKVVGLGDS-PNDLPLLEVVDLA-VVVPGPNGPNVSLKPG 232 (256)
T ss_pred ecCCCCHHHHHHHHHHHHhhcCCCceEEEEcCC-HhhHHHHHHCCEE-EEeCCCCCCccccCcc
Confidence 345677888999999999999 9999999997 9999999999955 5557754 345554
No 140
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.60 E-value=1.7e-07 Score=76.72 Aligned_cols=95 Identities=20% Similarity=0.309 Sum_probs=58.5
Q ss_pred ccCCccHHHHHHHHHHcCCeEEEEeCCCcc--------hHHHHHhc-CCcCccceEEecccCCCCCCCHHHHHHHHHHcC
Q 023114 169 HLCDPEAEKVFKAIRKAGVKLAVVSNFDTR--------LRPVLRAL-NCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLG 239 (287)
Q Consensus 169 ~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~--------~~~~l~~~-gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~ 239 (287)
.+++||+.+.|+.|.+.|..+.++|..+.. -...++++ |... ++.++...+ |. .++
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~-~~~~~~~~~----K~----------~v~ 136 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIP-YDNLIFTGD----KT----------LVG 136 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHH-HCCEEEESS----GG----------GC-
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCc-hheEEEecC----CC----------eEe
Confidence 357899999999999999778887765432 24455554 3222 244443321 21 122
Q ss_pred CCCCCEEEEcCCchhhHHHHHHcCceEEEECCC----------CCCHHHHHHHh
Q 023114 240 VKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD----------VHSFKEVAQRI 283 (287)
Q Consensus 240 ~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~----------~~~~~el~~~l 283 (287)
. + ++|+|+ +..+..+...|+++|++..+ +.||+|+.+++
T Consensus 137 ~--D--vlIDD~-~~n~~~~~~~g~~~iLfd~p~Nr~~~~~~Rv~~W~ei~~~i 185 (191)
T PF06941_consen 137 G--D--VLIDDR-PHNLEQFANAGIPVILFDQPYNRDESNFPRVNNWEEIEDLI 185 (191)
T ss_dssp ---S--EEEESS-SHHHSS-SSESSEEEEE--GGGTT--TSEEE-STTSHHHHH
T ss_pred c--c--EEecCC-hHHHHhccCCCceEEEEcCCCCCCCCCCccCCCHHHHHHHH
Confidence 2 2 899997 88899999999999999875 66777776654
No 141
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.50 E-value=2.3e-06 Score=71.27 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=67.0
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc----hHHHHHhcCCcCccceEEecccCCCCCC----CHHHHHHHHHH-cCC
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR----LRPVLRALNCDHWFDAVAVSAEVEAEKP----NPTIFLKACDL-LGV 240 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~----~~~~l~~~gl~~~f~~~~~~~~~~~~KP----~~~~~~~~~~~-l~~ 240 (287)
+..|++.++++.++++|++|.++||.+.. ....|...|+..+ +.++-.......|+ |......+.++ +.+
T Consensus 120 paip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~-~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrI 198 (229)
T TIGR01675 120 PALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGW-KHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRI 198 (229)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc-CeeeecCCCCCCchHhHHHHHHHHHHHhCCceE
Confidence 36799999999999999999999998754 3677888898765 55555432222332 22333333322 333
Q ss_pred CCCCEEEEcCCchhhHHHHHHcCceEEEECCCC
Q 023114 241 KPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDV 273 (287)
Q Consensus 241 ~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~ 273 (287)
+..|||. .+|+.+ ..+|.++.-++++.
T Consensus 199 ----v~~iGDq-~sDl~G-~~~~~RtFKLPNPm 225 (229)
T TIGR01675 199 ----WGNIGDQ-WSDLLG-SPPGRRTFKLPNPM 225 (229)
T ss_pred ----EEEECCC-hHHhcC-CCccCceeeCCCCc
Confidence 6789997 999966 45777887777753
No 142
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.48 E-value=1.8e-07 Score=78.53 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=65.1
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc----hHHHHHhcCCcCccceEEecccCCCC----CCCHHHHHHHHHH-cCC
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR----LRPVLRALNCDHWFDAVAVSAEVEAE----KPNPTIFLKACDL-LGV 240 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~----~~~~l~~~gl~~~f~~~~~~~~~~~~----KP~~~~~~~~~~~-l~~ 240 (287)
+..||+.+|++.++++|++|+++||.+.. ....|...|+..+-..++-.+..... .=|..--..+.++ +.+
T Consensus 115 ~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy~I 194 (229)
T PF03767_consen 115 PAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKGYRI 194 (229)
T ss_dssp EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHTTEEE
T ss_pred cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhccccccccccccccccchHHHHHHHHcCCcE
Confidence 35799999999999999999999997655 36778888987653444444332111 1133444444444 344
Q ss_pred CCCCEEEEcCCchhhHHHHHHc---CceEEEECCC
Q 023114 241 KPEDAVHVGDDRRNDVWGARDA---GCDAWLWGSD 272 (287)
Q Consensus 241 ~p~~~l~VGDs~~~Di~~a~~a---G~~~i~v~~~ 272 (287)
+++|||+ .+|+..++.. |-+.+..+++
T Consensus 195 ----i~~iGD~-~~D~~~~~~~~~~~~r~f~lPNp 224 (229)
T PF03767_consen 195 ----IANIGDQ-LSDFSGAKTAGARAERWFKLPNP 224 (229)
T ss_dssp ----EEEEESS-GGGCHCTHHHHHHHTTEEE-TTS
T ss_pred ----EEEeCCC-HHHhhcccccccccceEEEcCCC
Confidence 8899998 9999984433 3456666665
No 143
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.47 E-value=4.2e-07 Score=90.76 Aligned_cols=99 Identities=15% Similarity=0.190 Sum_probs=82.2
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCC----------------CCCCHHHHH
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEA----------------EKPNPTIFL 232 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~----------------~KP~~~~~~ 232 (287)
+++||+++.+++|++.|+++.++||.... ...+.+.+|+...++.++++++... ..+.|+--.
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K~ 607 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHKM 607 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHHH
Confidence 56899999999999999999999999888 7999999999877777766655432 336677777
Q ss_pred HHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEEC
Q 023114 233 KACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWG 270 (287)
Q Consensus 233 ~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~ 270 (287)
.+++.+.-..+.+.+|||+ .||..+++.|++. |.++
T Consensus 608 ~iv~~lq~~g~~v~mvGDG-vND~pAl~~AdVG-ia~g 643 (884)
T TIGR01522 608 KIVKALQKRGDVVAMTGDG-VNDAPALKLADIG-VAMG 643 (884)
T ss_pred HHHHHHHHCCCEEEEECCC-cccHHHHHhCCee-EecC
Confidence 7888777777889999995 9999999999964 5556
No 144
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.44 E-value=3.9e-07 Score=75.24 Aligned_cols=46 Identities=20% Similarity=0.097 Sum_probs=41.9
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEE
Q 023114 221 VEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAW 267 (287)
Q Consensus 221 ~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i 267 (287)
...+.+|+..+..++++++++++++++|||+ .||+.+++.+|+..+
T Consensus 158 ~p~~~~K~~~~~~~~~~~~~~~~~~~~~GD~-~nD~~~~~~~~~~va 203 (204)
T TIGR01484 158 LPAGVDKGSALQALLKELNGKRDEILAFGDS-GNDEEMFEVAGLAVA 203 (204)
T ss_pred ecCCCChHHHHHHHHHHhCCCHHHEEEEcCC-HHHHHHHHHcCCceE
Confidence 3468899999999999999999999999997 999999999998754
No 145
>PTZ00174 phosphomannomutase; Provisional
Probab=98.44 E-value=3.1e-06 Score=72.17 Aligned_cols=59 Identities=10% Similarity=-0.089 Sum_probs=50.7
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEcC----CchhhHHHHHHcCceEEEECCCCCCHHHHHHHhC
Q 023114 221 VEAEKPNPTIFLKACDLLGVKPEDAVHVGD----DRRNDVWGARDAGCDAWLWGSDVHSFKEVAQRIG 284 (287)
Q Consensus 221 ~~~~KP~~~~~~~~~~~l~~~p~~~l~VGD----s~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~l~ 284 (287)
...+-.|...+..++++ ++++++||| + .||++|.+.+|..++.|.+..+.++.+++++.
T Consensus 183 ~~~gvsKg~al~~L~~~----~~eviafGD~~~~~-~NDieMl~~~~~~g~~v~n~~~~~~~~~~~~~ 245 (247)
T PTZ00174 183 FPKGWDKTYCLRHLEND----FKEIHFFGDKTFEG-GNDYEIYNDPRTIGHSVKNPEDTIKILKELFL 245 (247)
T ss_pred eeCCCcHHHHHHHHHhh----hhhEEEEcccCCCC-CCcHhhhhcCCCceEEeCCHHHHHHHHHHHhc
Confidence 34566778889999988 589999999 6 99999999999988999998888888888764
No 146
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.40 E-value=1.5e-06 Score=72.88 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHcCC--CCCCEEEEcCCchhhHHHHHHcCceEE
Q 023114 224 EKPNPTIFLKACDLLGV--KPEDAVHVGDDRRNDVWGARDAGCDAW 267 (287)
Q Consensus 224 ~KP~~~~~~~~~~~l~~--~p~~~l~VGDs~~~Di~~a~~aG~~~i 267 (287)
+-.|......+++.+++ ++.++++|||+ .||+.|.+.+|+.++
T Consensus 179 ~~sK~~al~~l~~~~~~~~~~~~~i~~GD~-~nD~~ml~~ag~~v~ 223 (225)
T TIGR02461 179 GSDKGKAIKRLLDLYKLRPGAIESVGLGDS-ENDFPMFEVVDLAFL 223 (225)
T ss_pred CCCHHHHHHHHHHHhccccCcccEEEEcCC-HHHHHHHHhCCCcEe
Confidence 45567788888888865 77799999997 999999999997643
No 147
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.40 E-value=7.8e-06 Score=70.42 Aligned_cols=58 Identities=17% Similarity=0.097 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHc---CceEEEECCC-------CCCHHHHHHHh
Q 023114 225 KPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDA---GCDAWLWGSD-------VHSFKEVAQRI 283 (287)
Q Consensus 225 KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~a---G~~~i~v~~~-------~~~~~el~~~l 283 (287)
-.|...+..+++.+|++.+++++|||+ .||+.|-+.+ |-.+|.|++. ..+..++.++|
T Consensus 173 ~~Kg~al~~ll~~~~~~~~~v~~~GD~-~nD~~mf~~~~~~~g~~vavg~a~~~A~~~l~~~~~v~~~L 240 (266)
T PRK10187 173 TNKGEAIAAFMQEAPFAGRTPVFVGDD-LTDEAGFAVVNRLGGISVKVGTGATQASWRLAGVPDVWSWL 240 (266)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEcCC-ccHHHHHHHHHhcCCeEEEECCCCCcCeEeCCCHHHHHHHH
Confidence 346778889999999999999999997 9999999988 3466788875 44555555444
No 148
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.39 E-value=3.4e-06 Score=66.69 Aligned_cols=92 Identities=20% Similarity=0.287 Sum_probs=61.1
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc-h---HHHHHhc---C--CcCccceEEecccC---------CCCCC---CHHH
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR-L---RPVLRAL---N--CDHWFDAVAVSAEV---------EAEKP---NPTI 230 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~-~---~~~l~~~---g--l~~~f~~~~~~~~~---------~~~KP---~~~~ 230 (287)
.|++.++++.++++|+++.++|+.+.. . ..++..+ | +.. ..++++... ...+| |.+.
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~--g~li~~~g~~~~~~~~e~i~~~~~~~K~~~ 106 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPH--GPVLLSPDRLFAALHREVISKKPEVFKIAC 106 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCC--ceEEEcCCcchhhhhcccccCCHHHHHHHH
Confidence 489999999999999999999999866 3 4667662 3 321 234443321 12344 4455
Q ss_pred HHHHHHHcCCCCCCE-EEEcCCchhhHHHHHHcCceE
Q 023114 231 FLKACDLLGVKPEDA-VHVGDDRRNDVWGARDAGCDA 266 (287)
Q Consensus 231 ~~~~~~~l~~~p~~~-l~VGDs~~~Di~~a~~aG~~~ 266 (287)
+..+.+.+.-..... +.+|| ..+|+.+=+++|+..
T Consensus 107 l~~i~~~~~~~~~~f~~~~gn-~~~D~~~y~~~gi~~ 142 (157)
T smart00775 107 LRDIKSLFPPQGNPFYAGFGN-RITDVISYSAVGIPP 142 (157)
T ss_pred HHHHHHhcCCCCCCEEEEeCC-CchhHHHHHHcCCCh
Confidence 556665553222233 45787 599999999999986
No 149
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.38 E-value=5.4e-06 Score=71.15 Aligned_cols=46 Identities=20% Similarity=0.063 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHcCCC--CCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 225 KPNPTIFLKACDLLGVK--PEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 225 KP~~~~~~~~~~~l~~~--p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
.+|......+.+.+.-. +-.++.+||| +||+.|...+-..++. .++
T Consensus 207 ~dKg~A~~~L~~~y~~~~~~~~tiaLGDs-pND~~mLe~~D~~vvi-~~~ 254 (302)
T PRK12702 207 LPGEQAVQLLLDCYQRHLGPIKALGIGCS-PPDLAFLRWSEQKVVL-PSP 254 (302)
T ss_pred CCHHHHHHHHHHHHHhccCCceEEEecCC-hhhHHHHHhCCeeEEe-cCC
Confidence 36777788887776543 4589999998 9999999999977655 443
No 150
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.38 E-value=3.5e-06 Score=79.92 Aligned_cols=52 Identities=10% Similarity=0.029 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEE--cCCchhhHHHHHHcCceEEEECCCCCCH
Q 023114 223 AEKPNPTIFLKACDLLGVKPEDAVHV--GDDRRNDVWGARDAGCDAWLWGSDVHSF 276 (287)
Q Consensus 223 ~~KP~~~~~~~~~~~l~~~p~~~l~V--GDs~~~Di~~a~~aG~~~i~v~~~~~~~ 276 (287)
.+-.|..++..+++.++++.++++.| ||+ .||+.|.+.+|...+ ++++...+
T Consensus 610 ~gvdKG~AL~~L~e~~gI~~~eViafalGDs-~NDisMLe~Ag~gVA-M~~~~~~~ 663 (694)
T PRK14502 610 GGNDKGKAIKILNELFRLNFGNIHTFGLGDS-ENDYSMLETVDSPIL-VQRPGNKW 663 (694)
T ss_pred CCCCHHHHHHHHHHHhCCCccceEEEEcCCc-HhhHHHHHhCCceEE-EcCCCCCC
Confidence 35677889999999999999999999 997 999999999997654 46654443
No 151
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=98.37 E-value=1.9e-05 Score=67.31 Aligned_cols=96 Identities=10% Similarity=0.295 Sum_probs=70.2
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc----hHHHHHhcCCcCccceEEeccc-----------------------CCC
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR----LRPVLRALNCDHWFDAVAVSAE-----------------------VEA 223 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~----~~~~l~~~gl~~~f~~~~~~~~-----------------------~~~ 223 (287)
.-+++.++++.|++.|+++..+|..+.. ....|+.+|++ |+.....++ ...
T Consensus 82 ie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~--fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~ 159 (252)
T PF11019_consen 82 IESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGID--FSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTG 159 (252)
T ss_pred cchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCC--ccccccccCcceecccccCCCCCCceeecCeEEeC
Confidence 5689999999999999999999987655 35667777875 222110000 112
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHH----HHcCceEEEE
Q 023114 224 EKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGA----RDAGCDAWLW 269 (287)
Q Consensus 224 ~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a----~~aG~~~i~v 269 (287)
+-+|..++...++++|..|+.+|||.|+ ...+... +..|+..+.+
T Consensus 160 ~~~KG~~L~~fL~~~~~~pk~IIfIDD~-~~nl~sv~~a~k~~~I~f~G~ 208 (252)
T PF11019_consen 160 GQDKGEVLKYFLDKINQSPKKIIFIDDN-KENLKSVEKACKKSGIDFIGF 208 (252)
T ss_pred CCccHHHHHHHHHHcCCCCCeEEEEeCC-HHHHHHHHHHHhhCCCcEEEE
Confidence 5678899999999999999999999997 8888654 3456665433
No 152
>PLN02382 probable sucrose-phosphatase
Probab=98.36 E-value=1.7e-06 Score=79.07 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=49.9
Q ss_pred CCCCCCHHHHHHHHHHc---CCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHH
Q 023114 222 EAEKPNPTIFLKACDLL---GVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEV 279 (287)
Q Consensus 222 ~~~KP~~~~~~~~~~~l---~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el 279 (287)
..+-.|..++.++++++ |+++++++++||+ .||++|.+.+|..++++++..+.+++.
T Consensus 171 p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs-~NDleMl~~ag~~gvam~NA~~elk~~ 230 (413)
T PLN02382 171 PQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDS-GNDAELFSVPDVYGVMVSNAQEELLQW 230 (413)
T ss_pred eCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCC-HHHHHHHhcCCCCEEEEcCCcHHHHHH
Confidence 34566788999999999 9999999999998 999999999997778889987777764
No 153
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.31 E-value=1.2e-05 Score=68.39 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 222 EAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 222 ~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
...-.|..++.++++++++++++++++||| .||+.|. ..+..+|.|++.
T Consensus 161 P~~a~K~~Al~~L~~~~~~~~~~vl~aGDS-gND~~mL-~~~~~~vvV~Na 209 (247)
T PF05116_consen 161 PKGASKGAALRYLMERWGIPPEQVLVAGDS-GNDLEML-EGGDHGVVVGNA 209 (247)
T ss_dssp ETT-SHHHHHHHHHHHHT--GGGEEEEESS-GGGHHHH-CCSSEEEE-TTS
T ss_pred cCCCCHHHHHHHHHHHhCCCHHHEEEEeCC-CCcHHHH-cCcCCEEEEcCC
Confidence 345567899999999999999999999999 9999999 677799999984
No 154
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.30 E-value=1.1e-05 Score=68.40 Aligned_cols=100 Identities=14% Similarity=0.207 Sum_probs=65.8
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc----hHHHHHhcCCcCccceEEecccCCCCCC-----CHHHHHHHHHH-cC
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR----LRPVLRALNCDHWFDAVAVSAEVEAEKP-----NPTIFLKACDL-LG 239 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~----~~~~l~~~gl~~~f~~~~~~~~~~~~KP-----~~~~~~~~~~~-l~ 239 (287)
+..|++.++++.++++|++|.++||.++. ....|.+.|+..+ +.++-.......+. |...-..+.++ +.
T Consensus 145 pAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~-~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYr 223 (275)
T TIGR01680 145 PALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTW-EKLILKDPQDNSAENAVEYKTAARAKLIQEGYN 223 (275)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCc-ceeeecCCCCCccchhHHHHHHHHHHHHHcCce
Confidence 35799999999999999999999998754 3677888898765 55554433222221 21222222222 33
Q ss_pred CCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCC
Q 023114 240 VKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHS 275 (287)
Q Consensus 240 ~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~ 275 (287)
+ +..|||. .+|+.+....+-++.-++++..+
T Consensus 224 I----v~~iGDq-~sDl~G~~~g~~RtFKLPNP~~~ 254 (275)
T TIGR01680 224 I----VGIIGDQ-WNDLKGEHRGAIRSFKLPNPCTT 254 (275)
T ss_pred E----EEEECCC-HHhccCCCccCcceecCCCcccc
Confidence 3 6889997 99996665333688888887433
No 155
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=98.28 E-value=1.4e-05 Score=59.45 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=75.5
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
.+|+.+.+.+++|++. ++++|.|+..+- +...++-.|+. .+.++ .-.+++.-..+++.|+-+.+.|++|
T Consensus 30 klf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~--~~rv~-------a~a~~e~K~~ii~eLkk~~~k~vmV 99 (152)
T COG4087 30 KLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIP--VERVF-------AGADPEMKAKIIRELKKRYEKVVMV 99 (152)
T ss_pred EEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCc--eeeee-------cccCHHHHHHHHHHhcCCCcEEEEe
Confidence 4789999999999999 999999987666 78888888875 23333 2345677788899998877999999
Q ss_pred cCCchhhHHHHHHcCceEEEECCC
Q 023114 249 GDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
|| +.||+.+.++|-+..+-++++
T Consensus 100 Gn-GaND~laLr~ADlGI~tiq~e 122 (152)
T COG4087 100 GN-GANDILALREADLGICTIQQE 122 (152)
T ss_pred cC-CcchHHHhhhcccceEEeccC
Confidence 99 599999999999887777653
No 156
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.20 E-value=6e-06 Score=80.94 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=67.4
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
+++||+++.+++|++.|++++++|+.+.. ...+.+.+|+..++. . .| +--..++++++ .+..++||
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~~~~~------~----~p--~~K~~~v~~l~-~~~~v~mv 634 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGIDFRAG------L----LP--EDKVKAVTELN-QHAPLAMV 634 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCeecC------C----CH--HHHHHHHHHHh-cCCCEEEE
Confidence 57899999999999999999999998888 799999999963221 1 12 12222455555 34689999
Q ss_pred cCCchhhHHHHHHcCceEEEECCC
Q 023114 249 GDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
||+ .||..+++.|++. |.++++
T Consensus 635 GDg-iNDapAl~~A~vg-ia~g~~ 656 (741)
T PRK11033 635 GDG-INDAPAMKAASIG-IAMGSG 656 (741)
T ss_pred ECC-HHhHHHHHhCCee-EEecCC
Confidence 995 9999999999954 555665
No 157
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=98.15 E-value=4.8e-05 Score=62.21 Aligned_cols=97 Identities=19% Similarity=0.219 Sum_probs=77.3
Q ss_pred ccCCccHHHHHHHHHHcCCeEEEEeCCCcchHHHH-HhcC---C----cCccceEEecccCCCCCCCHHHHHHHHHHcCC
Q 023114 169 HLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVL-RALN---C----DHWFDAVAVSAEVEAEKPNPTIFLKACDLLGV 240 (287)
Q Consensus 169 ~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~l-~~~g---l----~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~ 240 (287)
...++++...++..+..|++++|.|+++..+.+.+ ..-+ + ..|||.-+ -.|-....|..+.+.+|.
T Consensus 122 ~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~gdl~~y~~gyfDt~i------G~K~e~~sy~~I~~~Ig~ 195 (254)
T KOG2630|consen 122 AHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAGDLRKYISGYFDTTI------GLKVESQSYKKIGHLIGK 195 (254)
T ss_pred ccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcchHHHHhhhhhhccc------cceehhHHHHHHHHHhCC
Confidence 46789999999999999999999999987754433 3322 2 33344322 246677899999999999
Q ss_pred CCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 241 KPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 241 ~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
+|.+++|.-|- .....+|+.+|+.+.++.++
T Consensus 196 s~~eiLfLTd~-~~Ea~aa~~aGl~a~l~~rP 226 (254)
T KOG2630|consen 196 SPREILFLTDV-PREAAAARKAGLQAGLVSRP 226 (254)
T ss_pred ChhheEEeccC-hHHHHHHHhcccceeeeecC
Confidence 99999999996 99999999999999777664
No 158
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=98.10 E-value=7.9e-06 Score=78.49 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=73.0
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
++.||+++.+++|++.|+++.++|+.+.. ...+.+.+|+++++.. . .|+--..+++++.-....+.|+
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~a~---------~--~PedK~~~v~~lq~~g~~Vamv 514 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFIAE---------A--TPEDKIALIRQEQAEGKLVAMT 514 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEEcC---------C--CHHHHHHHHHHHHHcCCeEEEE
Confidence 56799999999999999999999998887 7999999999754321 1 2333344444443344579999
Q ss_pred cCCchhhHHHHHHcCceEEEECCCCCCHHHHHH
Q 023114 249 GDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQ 281 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~ 281 (287)
||+ .||..+.+.|+.. +.++++.+-.+|.++
T Consensus 515 GDG-~NDapAL~~AdvG-iAm~~gt~~akeaad 545 (675)
T TIGR01497 515 GDG-TNDAPALAQADVG-VAMNSGTQAAKEAAN 545 (675)
T ss_pred CCC-cchHHHHHhCCEe-EEeCCCCHHHHHhCC
Confidence 995 9999999999966 555776444444433
No 159
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=98.08 E-value=0.00012 Score=68.12 Aligned_cols=93 Identities=14% Similarity=0.094 Sum_probs=54.7
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHh-cCCcCcc--------ceEEecccCCCCCC-C-HHHHHHHHHHc
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRA-LNCDHWF--------DAVAVSAEVEAEKP-N-PTIFLKACDLL 238 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~-~gl~~~f--------~~~~~~~~~~~~KP-~-~~~~~~~~~~l 238 (287)
+.|++.+. ++++|. .+|+|.+++. ++++++. +|++..+ +..+++.-.+. .+ . ..=...+-+.+
T Consensus 111 l~~~a~~~---~~~~g~-~vvVSASp~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~-~~c~Ge~Kv~rl~~~~ 185 (497)
T PLN02177 111 VHPETWRV---FNSFGK-RYIITASPRIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKP-GVLVGDHKRDAVLKEF 185 (497)
T ss_pred cCHHHHHH---HHhCCC-EEEEECCcHHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCC-CCCccHHHHHHHHHHh
Confidence 56665554 456775 4999999988 7999976 7875332 22222221110 01 0 01112222455
Q ss_pred CCCCCCEEEEcCCchhhHHHHHHcCceEEEECC
Q 023114 239 GVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGS 271 (287)
Q Consensus 239 ~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~ 271 (287)
|.+... ++.||| .+|..+...++- .++|+.
T Consensus 186 g~~~~~-~aYgDS-~sD~plL~~a~e-~y~V~~ 215 (497)
T PLN02177 186 GDALPD-LGLGDR-ETDHDFMSICKE-GYMVPR 215 (497)
T ss_pred CCCCce-EEEECC-ccHHHHHHhCCc-cEEeCC
Confidence 654444 899998 999999999994 455554
No 160
>PLN02423 phosphomannomutase
Probab=98.06 E-value=3.5e-06 Score=71.69 Aligned_cols=56 Identities=9% Similarity=-0.122 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEcC----CchhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 221 VEAEKPNPTIFLKACDLLGVKPEDAVHVGD----DRRNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 221 ~~~~KP~~~~~~~~~~~l~~~p~~~l~VGD----s~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
...+-.|..++..++ +++++++||| + .||++|.+.-|..++.|.++.++++.+.++
T Consensus 184 ~~~gvnKg~al~~L~-----~~~e~~aFGD~~~~~-~ND~eMl~~~~~~~~~~~~~~~~~~~~~~~ 243 (245)
T PLN02423 184 FPQGWDKTYCLQFLE-----DFDEIHFFGDKTYEG-GNDHEIFESERTIGHTVTSPDDTREQCTAL 243 (245)
T ss_pred eeCCCCHHHHHHHhc-----CcCeEEEEeccCCCC-CCcHHHHhCCCcceEEeCCHHHHHHHHHHh
Confidence 334555666666666 8999999999 6 999999999999999988876666666554
No 161
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=98.02 E-value=1.7e-05 Score=76.35 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=76.8
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
++.||+++.+++|++.|+++.++|+.... ...+.+++|++++|. .-.|+--..+.+++.-...-+.|+
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A-----------~~~PedK~~iV~~lQ~~G~~VaMt 513 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLA-----------EATPEDKLALIRQEQAEGRLVAMT 513 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEc-----------cCCHHHHHHHHHHHHHcCCeEEEE
Confidence 46799999999999999999999998888 799999999975332 123455556666665555669999
Q ss_pred cCCchhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 249 GDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
|| +.||-.+.+.|... +.+++|.+-.+|.+++
T Consensus 514 GD-GvNDAPALa~ADVG-IAMgsGTdvAkeAADi 545 (679)
T PRK01122 514 GD-GTNDAPALAQADVG-VAMNSGTQAAKEAGNM 545 (679)
T ss_pred CC-CcchHHHHHhCCEe-EEeCCCCHHHHHhCCE
Confidence 99 59999999999865 5567775555555444
No 162
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.00 E-value=7.1e-05 Score=72.34 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=65.9
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
++.||+...++.|++.|++++++|+.+.. .+.+.++.|++ .++. +- +| +--....+++.-+...+.||
T Consensus 723 ~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi~----~V~a-ev----~P--~~K~~~Ik~lq~~~~~VaMV 791 (951)
T KOG0207|consen 723 QVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVGID----NVYA-EV----LP--EQKAEKIKEIQKNGGPVAMV 791 (951)
T ss_pred ccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhCcc----eEEe-cc----Cc--hhhHHHHHHHHhcCCcEEEE
Confidence 46799999999999999999999999888 79999999954 3332 21 11 12233444554444679999
Q ss_pred cCCchhhHHHHHHcCceEEEECCC
Q 023114 249 GDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
|| +.||-.+.-.|.+. |.++.+
T Consensus 792 GD-GINDaPALA~AdVG-Iaig~g 813 (951)
T KOG0207|consen 792 GD-GINDAPALAQADVG-IAIGAG 813 (951)
T ss_pred eC-CCCccHHHHhhccc-eeeccc
Confidence 99 59999888887755 445554
No 163
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=97.99 E-value=1.9e-05 Score=79.36 Aligned_cols=109 Identities=18% Similarity=0.163 Sum_probs=77.2
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCcc----ceEEecccC----------------CCCCCCH
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWF----DAVAVSAEV----------------EAEKPNP 228 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f----~~~~~~~~~----------------~~~KP~~ 228 (287)
++.||+.+.++.|++.|+++.++|+.... ...+.+.+|+...- ...+.+.+. -...-.|
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~P 616 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVEP 616 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecCH
Confidence 46899999999999999999999998766 78999999985321 112232211 1122334
Q ss_pred HHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHH
Q 023114 229 TIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVA 280 (287)
Q Consensus 229 ~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~ 280 (287)
+--..+++.++-..+.+.++||+ .||+.+.+.|++. |.++++.+-.++.+
T Consensus 617 ~~K~~iV~~lq~~g~~va~iGDG-~ND~~alk~AdVG-ia~g~g~~~ak~aA 666 (917)
T TIGR01116 617 SHKSELVELLQEQGEIVAMTGDG-VNDAPALKKADIG-IAMGSGTEVAKEAS 666 (917)
T ss_pred HHHHHHHHHHHhcCCeEEEecCC-cchHHHHHhCCee-EECCCCcHHHHHhc
Confidence 44466777777667788899995 9999999999984 66666533333333
No 164
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=97.97 E-value=6.5e-05 Score=59.02 Aligned_cols=87 Identities=16% Similarity=0.258 Sum_probs=58.2
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcc----hHH-HHHhcCCcCccceEEecccCCCCCCCHHHH--HHHHHHcCCCCCCEEE
Q 023114 175 AEKVFKAIRKAGVKLAVVSNFDTR----LRP-VLRALNCDHWFDAVAVSAEVEAEKPNPTIF--LKACDLLGVKPEDAVH 247 (287)
Q Consensus 175 ~~~ll~~L~~~g~~i~ivSn~~~~----~~~-~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~--~~~~~~l~~~p~~~l~ 247 (287)
++.|++--.+.|-+|+.+|+...- +.+ +.+.+.+..+...++.++ ||+|.-| -..+..-++ -||
T Consensus 119 A~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gd-----k~k~~qy~Kt~~i~~~~~----~Ih 189 (237)
T COG3700 119 ARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGD-----KPKPGQYTKTQWIQDKNI----RIH 189 (237)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccC-----CCCcccccccHHHHhcCc----eEE
Confidence 445555556679999999986532 333 345566766555555543 3333333 344555555 589
Q ss_pred EcCCchhhHHHHHHcCceEEEECC
Q 023114 248 VGDDRRNDVWGARDAGCDAWLWGS 271 (287)
Q Consensus 248 VGDs~~~Di~~a~~aG~~~i~v~~ 271 (287)
.||| .+||.+|+++|.+.|-+-+
T Consensus 190 YGDS-D~Di~AAkeaG~RgIRilR 212 (237)
T COG3700 190 YGDS-DNDITAAKEAGARGIRILR 212 (237)
T ss_pred ecCC-chhhhHHHhcCccceeEEe
Confidence 9998 9999999999999976644
No 165
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=97.96 E-value=3.1e-05 Score=74.50 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=78.0
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
++.||+++.+++|++.|+++.++|+.... ...+.+++|++++|. .-.|+--..+.+.+.-...-+.|+
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A-----------~~~PedK~~iV~~lQ~~G~~VaMt 509 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVA-----------ECKPEDKINVIREEQAKGHIVAMT 509 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEc-----------CCCHHHHHHHHHHHHhCCCEEEEE
Confidence 56799999999999999999999998888 799999999975432 224555566666666555678999
Q ss_pred cCCchhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 249 GDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
|| +.||-.+.++|.+. |.++++.+-.+|.+++
T Consensus 510 GD-GvNDAPALa~ADVG-IAMgsGTdvAkeAADi 541 (673)
T PRK14010 510 GD-GTNDAPALAEANVG-LAMNSGTMSAKEAANL 541 (673)
T ss_pred CC-ChhhHHHHHhCCEE-EEeCCCCHHHHHhCCE
Confidence 99 59999999999965 6667875555555444
No 166
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=97.95 E-value=6.3e-05 Score=62.06 Aligned_cols=85 Identities=15% Similarity=0.113 Sum_probs=59.8
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-----hHHHHHhcCCcCccc-eEEecccCCCCCCCHHHHHHHHHHcCCCCCC
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-----LRPVLRALNCDHWFD-AVAVSAEVEAEKPNPTIFLKACDLLGVKPED 244 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-----~~~~l~~~gl~~~f~-~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~ 244 (287)
+.||+.+++++..++|.+|.-+||...+ ...-|.+.||....+ .++.- ...|++..-...+-+.+. =
T Consensus 123 ~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llk---k~~k~Ke~R~~~v~k~~~----i 195 (274)
T COG2503 123 AVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLK---KDKKSKEVRRQAVEKDYK----I 195 (274)
T ss_pred cCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEe---eCCCcHHHHHHHHhhccc----e
Confidence 4699999999999999999999997654 356678888865543 33333 335555555555555333 4
Q ss_pred EEEEcCCchhhHHHHHHcC
Q 023114 245 AVHVGDDRRNDVWGARDAG 263 (287)
Q Consensus 245 ~l~VGDs~~~Di~~a~~aG 263 (287)
++.|||+ ..|.......+
T Consensus 196 Vm~vGDN-l~DF~d~~~k~ 213 (274)
T COG2503 196 VMLVGDN-LDDFGDNAYKK 213 (274)
T ss_pred eeEecCc-hhhhcchhhhh
Confidence 8999997 98886544333
No 167
>PLN02645 phosphoglycolate phosphatase
Probab=97.91 E-value=9.4e-05 Score=65.23 Aligned_cols=88 Identities=15% Similarity=0.051 Sum_probs=68.0
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc----hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEE
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR----LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAV 246 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~----~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l 246 (287)
++||+.++|+.|+++|++++++||.+.. +...++.+|+...++.++++.. .....++..+....+.+
T Consensus 45 ~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~---------~~~~~l~~~~~~~~~~V 115 (311)
T PLN02645 45 LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSF---------AAAAYLKSINFPKDKKV 115 (311)
T ss_pred cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHH---------HHHHHHHhhccCCCCEE
Confidence 5699999999999999999999997744 3455688999877777776643 44555566565445568
Q ss_pred EEcCCchhhHHHHHHcCceEEE
Q 023114 247 HVGDDRRNDVWGARDAGCDAWL 268 (287)
Q Consensus 247 ~VGDs~~~Di~~a~~aG~~~i~ 268 (287)
+|+++ ..+...++.+|+..+.
T Consensus 116 ~viG~-~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 116 YVIGE-EGILEELELAGFQYLG 136 (311)
T ss_pred EEEcC-HHHHHHHHHCCCEEec
Confidence 88886 8999999999998653
No 168
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=97.90 E-value=6.8e-06 Score=65.08 Aligned_cols=91 Identities=19% Similarity=0.260 Sum_probs=60.7
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCC-cCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNC-DHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl-~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
+.||+.++|+.+.+. +.++|.|.+... +..+++.+.- ..+|+.++..++....+. .+.+-++.+|-+++++|+|
T Consensus 37 ~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ldp~~~~~~~~~~r~~~~~~~~---~~~KdL~~l~~~~~~vviv 112 (159)
T PF03031_consen 37 LRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALDPNGKLFSRRLYRDDCTFDKG---SYIKDLSKLGRDLDNVVIV 112 (159)
T ss_dssp E-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHTTTTSSEEEEEEGGGSEEETT---EEE--GGGSSS-GGGEEEE
T ss_pred eCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhhhhcccccccccccccccccc---ccccchHHHhhccccEEEE
Confidence 579999999999777 999999999877 7888888876 567888888876542211 1114466667778999999
Q ss_pred cCCchhhHHHHHHcCceE
Q 023114 249 GDDRRNDVWGARDAGCDA 266 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~~ 266 (287)
.|+ +.-...-...++..
T Consensus 113 DD~-~~~~~~~~~N~i~v 129 (159)
T PF03031_consen 113 DDS-PRKWALQPDNGIPV 129 (159)
T ss_dssp ES--GGGGTTSGGGEEE-
T ss_pred eCC-HHHeeccCCceEEe
Confidence 997 66553334444443
No 169
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.88 E-value=3.3e-05 Score=74.60 Aligned_cols=91 Identities=20% Similarity=0.246 Sum_probs=72.2
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
.+.|++++.++.|++.|+++.++|+.++. .+.+.+++|+++++..+. |+--...++++.-....+.||
T Consensus 537 ~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~Aell-----------PedK~~~V~~l~~~g~~VamV 605 (713)
T COG2217 537 ELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRAELL-----------PEDKAEIVRELQAEGRKVAMV 605 (713)
T ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhheccCC-----------cHHHHHHHHHHHhcCCEEEEE
Confidence 46799999999999999999999999888 799999999987655442 233345556665555789999
Q ss_pred cCCchhhHHHHHHcCceEEEECCCC
Q 023114 249 GDDRRNDVWGARDAGCDAWLWGSDV 273 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~~i~v~~~~ 273 (287)
|| +.||-.+...|-.. |.++.|.
T Consensus 606 GD-GINDAPALA~AdVG-iAmG~Gt 628 (713)
T COG2217 606 GD-GINDAPALAAADVG-IAMGSGT 628 (713)
T ss_pred eC-CchhHHHHhhcCee-EeecCCc
Confidence 99 69999999888854 6667763
No 170
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=97.75 E-value=0.00012 Score=67.26 Aligned_cols=101 Identities=23% Similarity=0.275 Sum_probs=68.9
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhc---------CCcCccceEEecccC-----------------CCC
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRAL---------NCDHWFDAVAVSAEV-----------------EAE 224 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~---------gl~~~f~~~~~~~~~-----------------~~~ 224 (287)
.|++..+|+.|+++|.++.++||++-. +...++.+ .+.++||.+++...- +..
T Consensus 185 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~g~l 264 (448)
T PF05761_consen 185 DPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTETGKL 264 (448)
T ss_dssp -CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTTSSE
T ss_pred CchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCCCcc
Confidence 478999999999999999999999876 45555443 577889999876420 000
Q ss_pred CCC-------------HHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHc-CceEEEECCC
Q 023114 225 KPN-------------PTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDA-GCDAWLWGSD 272 (287)
Q Consensus 225 KP~-------------~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~a-G~~~i~v~~~ 272 (287)
+.. ........+.+|....++++|||+...||...+.. ||++++|-.+
T Consensus 265 ~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~E 326 (448)
T PF05761_consen 265 KWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIPE 326 (448)
T ss_dssp ECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-TT
T ss_pred ccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEehh
Confidence 000 01145777888999999999999999999988887 9999999775
No 171
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.72 E-value=9e-05 Score=58.46 Aligned_cols=82 Identities=20% Similarity=0.293 Sum_probs=61.2
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCc-Ccc-ceEEecccCCCCCCCHHHHHHHH-HHcCCCCCCE
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCD-HWF-DAVAVSAEVEAEKPNPTIFLKAC-DLLGVKPEDA 245 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~-~~f-~~~~~~~~~~~~KP~~~~~~~~~-~~l~~~p~~~ 245 (287)
.++||+.++|++|++. ++++|+|++.+. +..+++.++.. .+| +.+++.++... + +.+-+ .-++.+.+.+
T Consensus 58 ~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~--~----~~KdL~~i~~~d~~~v 130 (156)
T TIGR02250 58 KLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESGS--P----HTKSLLRLFPADESMV 130 (156)
T ss_pred EECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCCC--C----ccccHHHHcCCCcccE
Confidence 4689999999999966 999999999998 79999999988 478 66677776431 1 11123 3357788899
Q ss_pred EEEcCCchhhHHHHH
Q 023114 246 VHVGDDRRNDVWGAR 260 (287)
Q Consensus 246 l~VGDs~~~Di~~a~ 260 (287)
+.|+|+ + ++...+
T Consensus 131 vivDd~-~-~~~~~~ 143 (156)
T TIGR02250 131 VIIDDR-E-DVWPWH 143 (156)
T ss_pred EEEeCC-H-HHhhcC
Confidence 999997 5 343333
No 172
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=97.72 E-value=8.1e-05 Score=74.54 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=79.7
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCC----------------CCCCCHHHHH
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVE----------------AEKPNPTIFL 232 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~----------------~~KP~~~~~~ 232 (287)
++.|++++.+++|++.|+++.++|+.... ...+.+.+|+.. +.++++.+.. ...-.|+--.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~--~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K~ 627 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLDA--GEVLIGSDIETLSDDELANLAERTTLFARLTPMHKE 627 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCc--cCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHHH
Confidence 46799999999999999999999998888 799999999952 3444444322 1233455555
Q ss_pred HHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 233 KACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 233 ~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
.+.+.+.-...-+.|+|| +.||..+.+.|.+. |.++++.+-.+|.+++
T Consensus 628 ~IV~~Lq~~G~vVam~GD-GvNDaPALk~ADVG-IAmg~gtdvAkeaADi 675 (902)
T PRK10517 628 RIVTLLKREGHVVGFMGD-GINDAPALRAADIG-ISVDGAVDIAREAADI 675 (902)
T ss_pred HHHHHHHHCCCEEEEECC-CcchHHHHHhCCEE-EEeCCcCHHHHHhCCE
Confidence 566665555567899999 59999999999965 6667765545555443
No 173
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=97.72 E-value=0.00011 Score=73.41 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=77.8
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCC----------------CCCCHHHHH
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEA----------------EKPNPTIFL 232 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~----------------~KP~~~~~~ 232 (287)
++.|++++.+++|++.|+++.++|+.... ...+.+.+|+.. +.++.+.+... ..-.|+--.
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~~--~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K~ 592 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGIDA--NDFLLGADIEELSDEELARELRKYHIFARLTPMQKS 592 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCC--CCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHHH
Confidence 46799999999999999999999998877 799999999963 23444333211 122344444
Q ss_pred HHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 233 KACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 233 ~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
.+.+.+.-....+.|+|| +.||..+.+.|.+. |.++++.+-.+|.+++
T Consensus 593 ~iV~~lq~~G~vVam~GD-GvNDapALk~AdVG-IAmg~gtdvAk~aADi 640 (867)
T TIGR01524 593 RIIGLLKKAGHTVGFLGD-GINDAPALRKADVG-ISVDTAADIAKEASDI 640 (867)
T ss_pred HHHHHHHhCCCEEEEECC-CcccHHHHHhCCEE-EEeCCccHHHHHhCCE
Confidence 555555444467999999 59999999999966 5567765555555554
No 174
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=97.70 E-value=7.2e-05 Score=73.67 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=77.1
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccC----------------------CCCCC
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEV----------------------EAEKP 226 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~----------------------~~~KP 226 (287)
++.|++++.+++|++.|+++.++|+.... ...+.+++|+.+. ++.+++. ....-
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr~ 518 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGTN---IYTADVLLKGDNRDDLPSGELGEMVEDADGFAEV 518 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCC---CcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEec
Confidence 56799999999999999999999998887 7999999999642 1222211 11223
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHH
Q 023114 227 NPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQ 281 (287)
Q Consensus 227 ~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~ 281 (287)
.|+--..+.+.+.-...-+.|+|| +.||..+.+.|.+. |.++++.+-.+|.++
T Consensus 519 ~Pe~K~~iV~~lq~~G~~VamvGD-GvNDapAL~~AdVG-IAm~~gtdvAkeaAD 571 (755)
T TIGR01647 519 FPEHKYEIVEILQKRGHLVGMTGD-GVNDAPALKKADVG-IAVAGATDAARSAAD 571 (755)
T ss_pred CHHHHHHHHHHHHhcCCEEEEEcC-CcccHHHHHhCCee-EEecCCcHHHHHhCC
Confidence 445555566666555677999999 59999999999966 556766444444433
No 175
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=97.67 E-value=0.00012 Score=74.01 Aligned_cols=108 Identities=17% Similarity=0.145 Sum_probs=76.1
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCC----------------CCCCCHHHHH
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVE----------------AEKPNPTIFL 232 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~----------------~~KP~~~~~~ 232 (287)
++.|++++.++.|++.|+++.++|+.... +..+.+.+|+...-..++.+++.. ...-.|+--.
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K~ 658 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDKQ 658 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHHH
Confidence 56799999999999999999999998877 799999999964323344443321 1223444445
Q ss_pred HHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEEC-CCCCCHHHH
Q 023114 233 KACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWG-SDVHSFKEV 279 (287)
Q Consensus 233 ~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~-~~~~~~~el 279 (287)
.+.+.+.-....+.|+|| +.||..+.++|-+. |.++ ++.+-.++.
T Consensus 659 ~iV~~lq~~g~vVam~GD-GvNDapALk~AdVG-IAmg~~gtdvAk~a 704 (941)
T TIGR01517 659 LLVLMLKDMGEVVAVTGD-GTNDAPALKLADVG-FSMGISGTEVAKEA 704 (941)
T ss_pred HHHHHHHHCCCEEEEECC-CCchHHHHHhCCcc-eecCCCccHHHHHh
Confidence 555555544567999999 59999999999865 4456 543333333
No 176
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=97.62 E-value=0.00013 Score=73.11 Aligned_cols=110 Identities=22% Similarity=0.195 Sum_probs=80.9
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCC----------------CCCCCHHHHH
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVE----------------AEKPNPTIFL 232 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~----------------~~KP~~~~~~ 232 (287)
++.|++++.+++|++.|+++.++|+.... ...+.+.+|+.. +.++++.+.. ...-.|+--.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~--~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~ 627 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLEP--GEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKS 627 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC--CCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHH
Confidence 46799999999999999999999998877 799999999952 2344443322 1223455555
Q ss_pred HHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 233 KACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 233 ~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
.+.+.+.-...-+.|+|| +.||..+.+.|-+. |.++++.+-.+|.++++
T Consensus 628 ~iV~~Lq~~G~vVamtGD-GvNDaPALk~ADVG-IAmg~gtdvAkeaADiV 676 (903)
T PRK15122 628 RVLKALQANGHTVGFLGD-GINDAPALRDADVG-ISVDSGADIAKESADII 676 (903)
T ss_pred HHHHHHHhCCCEEEEECC-CchhHHHHHhCCEE-EEeCcccHHHHHhcCEE
Confidence 666666555567999999 59999999999976 66677655556655543
No 177
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.62 E-value=0.00015 Score=72.83 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=83.9
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccc--eEEecccCCC----------------CCCCHHH
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFD--AVAVSAEVEA----------------EKPNPTI 230 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~--~~~~~~~~~~----------------~KP~~~~ 230 (287)
++.|++++.++.|++.|+++..+|+.... ...+.+++|+...-+ .++.+.+... ..=.|+-
T Consensus 547 ppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~q 626 (917)
T COG0474 547 PPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSPEQ 626 (917)
T ss_pred CCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHHH
Confidence 56799999999999999999999998877 799999999865443 3655654322 2234444
Q ss_pred HHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 231 FLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 231 ~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
-..+.+.+.-...-+.++|| +.||..|.+.|-+...+.++|.+-.++.++++
T Consensus 627 K~~IV~~lq~~g~vVamtGD-GvNDapALk~ADVGIamg~~Gtdaak~Aadiv 678 (917)
T COG0474 627 KARIVEALQKSGHVVAMTGD-GVNDAPALKAADVGIAMGGEGTDAAKEAADIV 678 (917)
T ss_pred HHHHHHHHHhCCCEEEEeCC-CchhHHHHHhcCccEEecccHHHHHHhhcceE
Confidence 45555555555567999999 69999999999988767666655555555443
No 178
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=97.61 E-value=0.0011 Score=65.88 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHH---HcCCCCCCEEEEcCCchhhHHHHHHcC-------------ceEEEECCC-------CCCHHHHH
Q 023114 224 EKPNPTIFLKACD---LLGVKPEDAVHVGDDRRNDVWGARDAG-------------CDAWLWGSD-------VHSFKEVA 280 (287)
Q Consensus 224 ~KP~~~~~~~~~~---~l~~~p~~~l~VGDs~~~Di~~a~~aG-------------~~~i~v~~~-------~~~~~el~ 280 (287)
+-.|...+..+++ .+|.+++.+++|||+ .||..|-+.++ .-+|.||.+ ..+..|+.
T Consensus 760 gvnKG~Al~~Ll~~~~~~g~~~d~vl~~GDD-~nDedMF~~~~~~~~g~~~~~~~~~~~v~VG~~~S~A~y~L~d~~eV~ 838 (854)
T PLN02205 760 GVSKGLVAKRLLSIMQERGMLPDFVLCIGDD-RSDEDMFEVITSSMAGPSIAPRAEVFACTVGQKPSKAKYYLDDTAEIV 838 (854)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEEcCC-ccHHHHHHHhhhhccCCcccccccceeEEECCCCccCeEecCCHHHHH
Confidence 4456777887764 468999999999997 99999999886 245777765 45666666
Q ss_pred HHh
Q 023114 281 QRI 283 (287)
Q Consensus 281 ~~l 283 (287)
++|
T Consensus 839 ~lL 841 (854)
T PLN02205 839 RLM 841 (854)
T ss_pred HHH
Confidence 655
No 179
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.57 E-value=0.0013 Score=64.76 Aligned_cols=57 Identities=16% Similarity=0.060 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcC--ceEEEECCC-------CCCHHHHHHHh
Q 023114 224 EKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAG--CDAWLWGSD-------VHSFKEVAQRI 283 (287)
Q Consensus 224 ~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG--~~~i~v~~~-------~~~~~el~~~l 283 (287)
+-.|..++..+++ +++++.++++||+ .||+.|.+.++ ..++.+++. ..+-+|+.+.|
T Consensus 655 ~vnKG~al~~ll~--~~~~d~vl~~GD~-~nDe~Mf~~~~~~~~~v~vG~~~s~A~~~l~~~~eV~~~L 720 (726)
T PRK14501 655 GVNKGRAVRRLLE--AGPYDFVLAIGDD-TTDEDMFRALPETAITVKVGPGESRARYRLPSQREVRELL 720 (726)
T ss_pred CCCHHHHHHHHHh--cCCCCEEEEECCC-CChHHHHHhcccCceEEEECCCCCcceEeCCCHHHHHHHH
Confidence 4457788888888 7788999999997 99999999874 356777765 44556665554
No 180
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=97.51 E-value=0.00062 Score=51.47 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=33.3
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc----------------hHHHHHhcCCcCccceEEec
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR----------------LRPVLRALNCDHWFDAVAVS 218 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~----------------~~~~l~~~gl~~~f~~~~~~ 218 (287)
+.+++.+.++.|+++|+.++++|+.+.. +..+|++.++. +|.++.+
T Consensus 25 ~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ip--Yd~l~~~ 86 (126)
T TIGR01689 25 PILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVP--YDEIYVG 86 (126)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCC--CceEEeC
Confidence 3477888999999999999999987643 24566666665 4555544
No 181
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=97.47 E-value=0.00034 Score=71.20 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=76.0
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCc----------cceEEecccCCC---------------
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHW----------FDAVAVSAEVEA--------------- 223 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~----------f~~~~~~~~~~~--------------- 223 (287)
++.|++.+.++.|++.|+++.++|+.... ...+.+.+|+.+. -+.++++.+...
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~V 725 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCLV 725 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCeE
Confidence 57799999999999999999999998877 7999999999532 123444433221
Q ss_pred -CCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEEC-CCCCCHHHHH
Q 023114 224 -EKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWG-SDVHSFKEVA 280 (287)
Q Consensus 224 -~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~-~~~~~~~el~ 280 (287)
..-.|+--..+.+.+.-....+.++|| +.||..+.+.|.+.. .++ ++.+-.++.+
T Consensus 726 ~ar~sP~~K~~iV~~lq~~g~~Vam~GD-GvNDapaLk~AdVGI-Amg~~gt~vak~aA 782 (1053)
T TIGR01523 726 IARCAPQTKVKMIEALHRRKAFCAMTGD-GVNDSPSLKMANVGI-AMGINGSDVAKDAS 782 (1053)
T ss_pred EEecCHHHHHHHHHHHHhcCCeeEEeCC-CcchHHHHHhCCccE-ecCCCccHHHHHhc
Confidence 222444445555555544567999999 599999999999664 445 4433334433
No 182
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=97.47 E-value=0.002 Score=58.93 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=82.5
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEc
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVG 249 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VG 249 (287)
+.||++|=+.+||+.|++.+-||+.+.- ...+.+..|++++.. .-+|+--..++++-+-+..=+-|.|
T Consensus 448 vK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfiA-----------eatPEdK~~~I~~eQ~~grlVAMtG 516 (681)
T COG2216 448 VKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFIA-----------EATPEDKLALIRQEQAEGRLVAMTG 516 (681)
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchhhhh-----------cCChHHHHHHHHHHHhcCcEEEEcC
Confidence 4599999999999999999999998877 688899999987542 2334555667777777777789999
Q ss_pred CCchhhHHHHHHcCceEEEECCCCCCHHHHHHHhCc
Q 023114 250 DDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQRIGV 285 (287)
Q Consensus 250 Ds~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~l~~ 285 (287)
| +.||-.+.-+|... ++.++|....+|..++++.
T Consensus 517 D-GTNDAPALAqAdVg-~AMNsGTqAAkEAaNMVDL 550 (681)
T COG2216 517 D-GTNDAPALAQADVG-VAMNSGTQAAKEAANMVDL 550 (681)
T ss_pred C-CCCcchhhhhcchh-hhhccccHHHHHhhccccc
Confidence 9 59999999988865 5558888888888877754
No 183
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.45 E-value=0.0003 Score=63.18 Aligned_cols=98 Identities=19% Similarity=0.301 Sum_probs=84.6
Q ss_pred CCcc--HHHHHHHHHHcCCeEEEEeCC--Ccc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCE
Q 023114 171 CDPE--AEKVFKAIRKAGVKLAVVSNF--DTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDA 245 (287)
Q Consensus 171 ~~pg--~~~ll~~L~~~g~~i~ivSn~--~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~ 245 (287)
++|. ..++++.+.++|.+|.++|+- +.+ ++.+|...|.+.+--.+..+.+....|.+...|..+++.-+++|...
T Consensus 98 Lypn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~EnVd~~~w 177 (635)
T COG5610 98 LYPNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLENVDPKKW 177 (635)
T ss_pred eeccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCCccCceeeecceeehhcccchHHHHHHhhcCCChhhe
Confidence 4554 558999999999999999984 344 69999999987554446778888899999999999999999999999
Q ss_pred EEEcCCchhhHHHHHHcCceEEE
Q 023114 246 VHVGDDRRNDVWGARDAGCDAWL 268 (287)
Q Consensus 246 l~VGDs~~~Di~~a~~aG~~~i~ 268 (287)
++|||+...|..+++..|+.+.+
T Consensus 178 ~H~GDN~~aD~l~pk~LgI~Tlf 200 (635)
T COG5610 178 IHCGDNWVADYLKPKNLGISTLF 200 (635)
T ss_pred EEecCchhhhhcCccccchhHHH
Confidence 99999999999999999998754
No 184
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.39 E-value=0.002 Score=50.46 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=59.3
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc----hHHHHHhc-----CCcCccceEEecccC-------CCCCCCHHHHH---
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR----LRPVLRAL-----NCDHWFDAVAVSAEV-------EAEKPNPTIFL--- 232 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~----~~~~l~~~-----gl~~~f~~~~~~~~~-------~~~KP~~~~~~--- 232 (287)
.||+.+++..+.++||++.-+|+.+.. .+.+|..+ ++.+ --++.+.+. ..-.++|+.|.
T Consensus 29 h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~--Gpv~~sP~~l~~al~rEvi~~~p~~fK~~~ 106 (157)
T PF08235_consen 29 HPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPD--GPVLLSPDSLFSALHREVISKDPEEFKIAC 106 (157)
T ss_pred hhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCC--CCEEECCcchhhhhhccccccChHHHHHHH
Confidence 599999999999999999999998743 46677766 4432 122333110 11233455543
Q ss_pred --HHHHHcC-CCCCCEEEEcCCchhhHHHHHHcCceE
Q 023114 233 --KACDLLG-VKPEDAVHVGDDRRNDVWGARDAGCDA 266 (287)
Q Consensus 233 --~~~~~l~-~~p~~~l~VGDs~~~Di~~a~~aG~~~ 266 (287)
.+...+. ....=...+|+. .+|+.+=+++|+..
T Consensus 107 L~~l~~~f~~~~~pf~agfGN~-~tDv~aY~~vGip~ 142 (157)
T PF08235_consen 107 LRDLRALFPPDGNPFYAGFGNR-STDVIAYKAVGIPK 142 (157)
T ss_pred HHHHHHhcCCCCCeEEEecCCc-HHHHHHHHHcCCCh
Confidence 3333322 122235668995 99999999999986
No 185
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.30 E-value=0.0019 Score=54.91 Aligned_cols=79 Identities=22% Similarity=0.365 Sum_probs=62.2
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCC---------------------------
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEA--------------------------- 223 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~--------------------------- 223 (287)
.|.+.+-|..|++.|.-+++=|.|..+ +..-++.+++.++||.+++......
T Consensus 144 ~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd~ii~~G~~~~~~~~~~~~d~~~~~~f~~~~FylDv~~ 223 (297)
T PF05152_consen 144 DPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEGYFDIIICGGNKAGEYNSRVIVDRQYKVIFVSKPFYLDVTN 223 (297)
T ss_pred ChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccccEEEEeCCccCCcCCccceeecccceEEeccceEEeCCc
Confidence 477788899999999999999999888 8999999999999999988743110
Q ss_pred --CCC-CHHHHHHHHHHcCCCCCCEEE-EcC
Q 023114 224 --EKP-NPTIFLKACDLLGVKPEDAVH-VGD 250 (287)
Q Consensus 224 --~KP-~~~~~~~~~~~l~~~p~~~l~-VGD 250 (287)
.-| +|....+.+++.|+..-+++- |.|
T Consensus 224 ~~~LPKSPrVVL~yL~k~gvny~KtiTLVDD 254 (297)
T PF05152_consen 224 VNNLPKSPRVVLWYLRKKGVNYFKTITLVDD 254 (297)
T ss_pred CCCCCCCCeehHHHHHHcCCceeeeEEEecc
Confidence 012 577888999999998766554 444
No 186
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=97.25 E-value=0.0021 Score=52.48 Aligned_cols=89 Identities=12% Similarity=0.116 Sum_probs=55.6
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCc--cc--eEEecc--------cCC--CCCCCHHHHHHHH
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHW--FD--AVAVSA--------EVE--AEKPNPTIFLKAC 235 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~--f~--~~~~~~--------~~~--~~KP~~~~~~~~~ 235 (287)
..|++.++|+.+.++ +.|+|.|.+... +..++..+|+... +. .+...+ ..+ .-|+ +..+-
T Consensus 46 kRP~l~eFL~~~~~~-feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKd----L~~lw 120 (195)
T TIGR02245 46 MRPYLHEFLTSAYED-YDIVIWSATSMKWIEIKMTELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKP----LGVIW 120 (195)
T ss_pred eCCCHHHHHHHHHhC-CEEEEEecCCHHHHHHHHHHhcccCCccceEEEEeccccceeeEeeccCcEEEee----cHHhh
Confidence 359999999999986 999999998877 8999998876321 11 111111 001 1232 22233
Q ss_pred HHcC--CCCCCEEEEcCCchhhHHHHHHcCce
Q 023114 236 DLLG--VKPEDAVHVGDDRRNDVWGARDAGCD 265 (287)
Q Consensus 236 ~~l~--~~p~~~l~VGDs~~~Di~~a~~aG~~ 265 (287)
++++ .+.+++|+|.|+ +.-...--..|+.
T Consensus 121 ~~l~~~~~~~ntiiVDd~-p~~~~~~P~N~i~ 151 (195)
T TIGR02245 121 ALLPEFYSMKNTIMFDDL-RRNFLMNPQNGLK 151 (195)
T ss_pred hhcccCCCcccEEEEeCC-HHHHhcCCCCccc
Confidence 3554 377899999998 5554433334544
No 187
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.008 Score=46.99 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=60.2
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcch----HHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEE
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTRL----RPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAV 246 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~~----~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l 246 (287)
+..++...|..++++ .+++-+|.....+ ..++..-.+. ++.+....- ..| ..+++.++++ +
T Consensus 73 ~~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~~~l~~q~ih--~~~l~i~g~--h~K------V~~vrth~id----l 137 (194)
T COG5663 73 LAQLVKQVLPSLKEE-HRLIYITARKADLTRITYAWLFIQNIH--YDHLEIVGL--HHK------VEAVRTHNID----L 137 (194)
T ss_pred HHHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHHHHHHHhccc--hhhhhhhcc--ccc------chhhHhhccC----c
Confidence 346788888888877 6788888765442 3444444432 454433221 222 4567888885 7
Q ss_pred EEcCCchhhHHHHHHcCceEEEECCC
Q 023114 247 HVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 247 ~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
+++|+..|-++.|+.+|+++++++++
T Consensus 138 f~ed~~~na~~iAk~~~~~vilins~ 163 (194)
T COG5663 138 FFEDSHDNAGQIAKNAGIPVILINSP 163 (194)
T ss_pred cccccCchHHHHHHhcCCcEEEecCc
Confidence 99999999999999999999999885
No 188
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.0047 Score=53.88 Aligned_cols=99 Identities=19% Similarity=0.253 Sum_probs=69.9
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHH---hcCCcCccceEEecccCCC-----CCC-----------------
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLR---ALNCDHWFDAVAVSAEVEA-----EKP----------------- 226 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~---~~gl~~~f~~~~~~~~~~~-----~KP----------------- 226 (287)
|....++..|+++|.++.++||++.. +..-.. --.+.+.||.++.-.+-.. .+|
T Consensus 243 ~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~wdkv~ 322 (510)
T KOG2470|consen 243 PQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLWDKVD 322 (510)
T ss_pred HHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchhhhhhh
Confidence 77889999999999999999999988 443333 3356778888765443111 111
Q ss_pred ---CHHH-----HHHHHHHcCCCCCCEEEEcCCchhhHHHHH-HcCceEEEECC
Q 023114 227 ---NPTI-----FLKACDLLGVKPEDAVHVGDDRRNDVWGAR-DAGCDAWLWGS 271 (287)
Q Consensus 227 ---~~~~-----~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~-~aG~~~i~v~~ 271 (287)
+..+ +...++.-|....+++++||+..+|+.... .+||++-++-.
T Consensus 323 klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~ 376 (510)
T KOG2470|consen 323 KLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIP 376 (510)
T ss_pred hcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccchH
Confidence 0011 234455557777899999999999999887 89999866543
No 189
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=97.07 E-value=0.0016 Score=55.28 Aligned_cols=57 Identities=19% Similarity=0.051 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHc-------CceEEEECCC---------CCCHHHHHHHh
Q 023114 226 PNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDA-------GCDAWLWGSD---------VHSFKEVAQRI 283 (287)
Q Consensus 226 P~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~a-------G~~~i~v~~~---------~~~~~el~~~l 283 (287)
.|...+..++++++.++.++++|||+ .||+.+.+.+ |..++.+..+ ..+.+|+.+++
T Consensus 167 ~Kg~a~~~~~~~~~~~~~~~i~iGD~-~~D~~~~~~~~~~~~~~g~~~v~v~~g~~~~~A~~~~~~~~~v~~~L 239 (244)
T TIGR00685 167 NKGEIVKRLLWHQPGSGISPVYLGDD-ITDEDAFRVVNNQWGNYGFYPVPIGSGSKKTVAKFHLTGPQQVLEFL 239 (244)
T ss_pred CHHHHHHHHHHhcccCCCceEEEcCC-CcHHHHHHHHhcccCCCCeEEEEEecCCcCCCceEeCCCHHHHHHHH
Confidence 34689999999999999999999998 9999999999 7778888432 56777776655
No 190
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.01 E-value=0.029 Score=46.21 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=29.7
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCC
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNC 208 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl 208 (287)
+.||+.+.+..|... +.-+|+|.+.+. ++.+...+|+
T Consensus 84 lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~ 121 (315)
T COG4030 84 LVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGV 121 (315)
T ss_pred cCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCC
Confidence 679999999999887 677788877766 6777777766
No 191
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=97.00 E-value=0.0015 Score=57.71 Aligned_cols=96 Identities=20% Similarity=0.285 Sum_probs=67.2
Q ss_pred ccCCccHHHHHHHHHHcCCeEEEEeCCCcc-------------hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHH
Q 023114 169 HLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-------------LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKAC 235 (287)
Q Consensus 169 ~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-------------~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~ 235 (287)
..++|.+..-+.++.+.|++++|.||.... +..+...+|+. |......-.....||...++....
T Consensus 103 ~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl~vP--i~~~~A~~~~~yRKP~tGMwe~~~ 180 (422)
T KOG2134|consen 103 RILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANLGVP--IQLLAAIIKGKYRKPSTGMWEFLK 180 (422)
T ss_pred eeeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhcCCc--eEEeeeccCCcccCcchhHHHHHH
Confidence 346788889999999999999999985321 34455555554 444433344568999999999999
Q ss_pred HHcC----CCCCCEEEEcCC--------------chhhHHHHHHcCceE
Q 023114 236 DLLG----VKPEDAVHVGDD--------------RRNDVWGARDAGCDA 266 (287)
Q Consensus 236 ~~l~----~~p~~~l~VGDs--------------~~~Di~~a~~aG~~~ 266 (287)
+..+ +....+++|||- -..|+..|..+|+..
T Consensus 181 ~~~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF 229 (422)
T KOG2134|consen 181 RLENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKF 229 (422)
T ss_pred HHhhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCcc
Confidence 8765 455567788872 135677777777664
No 192
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=97.00 E-value=0.0022 Score=65.21 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=74.5
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCcc------------------------ceEEecccCC--
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWF------------------------DAVAVSAEVE-- 222 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f------------------------~~~~~~~~~~-- 222 (287)
++.|++++.++++++.|+++.++|+.... +..+.+.+|+-.-- ..++++.+..
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~l 647 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDM 647 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhhC
Confidence 46789999999999999999999998877 78899999883210 1244433321
Q ss_pred ----------------CCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEEC-CCCCCHHHHHHH
Q 023114 223 ----------------AEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWG-SDVHSFKEVAQR 282 (287)
Q Consensus 223 ----------------~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~-~~~~~~~el~~~ 282 (287)
...-.|+--..+.+.+.-...-+.++||. .||+.+.+.|.+. |.++ +|.+-.++.+++
T Consensus 648 ~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG-~ND~paLk~AdVG-iamg~~G~~vak~aADi 722 (997)
T TIGR01106 648 TSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDG-VNDSPALKKADIG-VAMGIAGSDVSKQAADM 722 (997)
T ss_pred CHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCC-cccHHHHhhCCcc-eecCCcccHHHHHhhce
Confidence 12224444444555554444568999995 9999999999966 4445 343334444443
No 193
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=96.93 E-value=0.0078 Score=52.21 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=59.0
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc----hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEE
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR----LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAV 246 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~----~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l 246 (287)
++||+.++|++|+++|++++++||.+.. ....++.+|+....+.++++. ......+++....+.+++
T Consensus 19 ~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~---------~~~~~~l~~~~~~~~~v~ 89 (279)
T TIGR01452 19 VVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSA---------LCAARLLRQPPDAPKAVY 89 (279)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHH---------HHHHHHHHhhCcCCCEEE
Confidence 4699999999999999999999996533 345678889865445555442 344444555444456799
Q ss_pred EEcCCchhhHHHHHHcCceE
Q 023114 247 HVGDDRRNDVWGARDAGCDA 266 (287)
Q Consensus 247 ~VGDs~~~Di~~a~~aG~~~ 266 (287)
++|+. ......+.+|+..
T Consensus 90 ~iG~~--~~~~~l~~~g~~~ 107 (279)
T TIGR01452 90 VIGEE--GLRAELDAAGIRL 107 (279)
T ss_pred EEcCH--HHHHHHHHCCCEE
Confidence 99974 3455567778764
No 194
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=96.78 E-value=0.0059 Score=57.52 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=63.2
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
++.|++.+.++.|++.|+++.++|+.... ...+.+.+|+ ...-.|+--....+++.-....+.+|
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi--------------~~~~~p~~K~~~v~~l~~~g~~v~~v 412 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGI--------------FARVTPEEKAALVEALQKKGRVVAMT 412 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCc--------------eeccCHHHHHHHHHHHHHCCCEEEEE
Confidence 56799999999999999999999998887 6888888886 11123444445555554444679999
Q ss_pred cCCchhhHHHHHHcCce
Q 023114 249 GDDRRNDVWGARDAGCD 265 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~ 265 (287)
|| +.||..+.+.|+..
T Consensus 413 GD-g~nD~~al~~Advg 428 (499)
T TIGR01494 413 GD-GVNDAPALKKADVG 428 (499)
T ss_pred CC-ChhhHHHHHhCCCc
Confidence 99 59999999999855
No 195
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.75 E-value=0.016 Score=52.92 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=65.8
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCC----CCCCCHHHHHHHHHHcCCCCCCEE
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVE----AEKPNPTIFLKACDLLGVKPEDAV 246 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~----~~KP~~~~~~~~~~~l~~~p~~~l 246 (287)
|....+++..|+++|+-++|||-.... +...+..+ .+-++.-++.. .=.||.+-.+.++++||+..+..+
T Consensus 257 fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~kh-----p~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmv 331 (574)
T COG3882 257 FKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKH-----PDMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMV 331 (574)
T ss_pred HHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhhC-----CCeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceE
Confidence 445668888999999999999965554 76666654 23333333322 246889999999999999999999
Q ss_pred EEcCCchhhHHHHHHcC
Q 023114 247 HVGDDRRNDVWGARDAG 263 (287)
Q Consensus 247 ~VGDs~~~Di~~a~~aG 263 (287)
|++|+ +...+--+.-+
T Consensus 332 FiDD~-p~ErE~vk~~~ 347 (574)
T COG3882 332 FIDDN-PAERELVKREL 347 (574)
T ss_pred EecCC-HHHHHHHHhcC
Confidence 99998 88888888777
No 196
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=96.67 E-value=0.0067 Score=58.71 Aligned_cols=112 Identities=19% Similarity=0.243 Sum_probs=81.6
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccc----eEEecccCCC----------------CCCCH
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFD----AVAVSAEVEA----------------EKPNP 228 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~----~~~~~~~~~~----------------~KP~~ 228 (287)
+|.|++++.++.+++.|+++..+|+.++. ...+.++.|+...-+ ..+++.+... ..-.|
T Consensus 584 PPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~P 663 (972)
T KOG0202|consen 584 PPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARAEP 663 (972)
T ss_pred CCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEecCc
Confidence 56799999999999999999999999988 799999999854433 3344433221 12234
Q ss_pred HHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEEC-CCCCCHHHHHHHh
Q 023114 229 TIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWG-SDVHSFKEVAQRI 283 (287)
Q Consensus 229 ~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~-~~~~~~~el~~~l 283 (287)
.--.++.+.|+-..+=+-|-|| +.||-.+.|.|.+. |+.| +|..-.+|.++++
T Consensus 664 ~HK~kIVeaLq~~geivAMTGD-GVNDApALK~AdIG-IAMG~~GTdVaKeAsDMV 717 (972)
T KOG0202|consen 664 QHKLKIVEALQSRGEVVAMTGD-GVNDAPALKKADIG-IAMGISGTDVAKEASDMV 717 (972)
T ss_pred hhHHHHHHHHHhcCCEEEecCC-Cccchhhhhhcccc-eeecCCccHhhHhhhhcE
Confidence 4445555555555566889999 59999999999966 5557 7777777776654
No 197
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=96.67 E-value=0.043 Score=47.53 Aligned_cols=54 Identities=30% Similarity=0.331 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHc--------C-CCCCCEEEEcCCchhhHHHHH---------------HcCceEEEECCCCCC
Q 023114 222 EAEKPNPTIFLKACDLL--------G-VKPEDAVHVGDDRRNDVWGAR---------------DAGCDAWLWGSDVHS 275 (287)
Q Consensus 222 ~~~KP~~~~~~~~~~~l--------~-~~p~~~l~VGDs~~~Di~~a~---------------~aG~~~i~v~~~~~~ 275 (287)
..+||.+-.|+++-..+ + -++.+..+|||...+|+.+|. .-||.+|+|.+|+++
T Consensus 268 t~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TGV~~ 345 (389)
T KOG1618|consen 268 TLGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTGVYN 345 (389)
T ss_pred ccCCCceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCCCceEEEEeeeeec
Confidence 34899988887654322 2 256789999999999999997 789999999988655
No 198
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.59 E-value=0.044 Score=45.05 Aligned_cols=92 Identities=13% Similarity=0.094 Sum_probs=49.4
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc----hHHHHHhcCCcCc----cceEEecccCCCCCCCHHHHHHHHHHcCCCCCC
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR----LRPVLRALNCDHW----FDAVAVSAEVEAEKPNPTIFLKACDLLGVKPED 244 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~----~~~~l~~~gl~~~----f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~ 244 (287)
|--+..|..++. |...|++=+... +...|...|+.-. |-.++.. ..++++.....++. -++++... -
T Consensus 137 pre~aaLa~~rE--yseti~~rs~d~~~~~~~~~L~e~glt~v~garf~~v~~a-s~gKg~Aa~~ll~~-y~rl~~~r-~ 211 (274)
T COG3769 137 PREQAALAMLRE--YSETIIWRSSDERMAQFTARLNERGLTFVHGARFWHVLDA-SAGKGQAANWLLET-YRRLGGAR-T 211 (274)
T ss_pred ChHHhHHHHHHH--hhhheeecccchHHHHHHHHHHhcCceEEeccceEEEecc-ccCccHHHHHHHHH-HHhcCcee-E
Confidence 444445555554 566666654444 4777888887421 2222222 22333322222222 22333321 4
Q ss_pred EEEEcCCchhhHHHHHHcCceEEEECC
Q 023114 245 AVHVGDDRRNDVWGARDAGCDAWLWGS 271 (287)
Q Consensus 245 ~l~VGDs~~~Di~~a~~aG~~~i~v~~ 271 (287)
++.+||+ .||+.+.. .+..++.|++
T Consensus 212 t~~~GDg-~nD~Pl~e-v~d~AfiV~~ 236 (274)
T COG3769 212 TLGLGDG-PNDAPLLE-VMDYAFIVKG 236 (274)
T ss_pred EEecCCC-CCcccHHH-hhhhheeecc
Confidence 9999997 99997665 6667777764
No 199
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=96.34 E-value=0.022 Score=58.57 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=36.3
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCc
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCD 209 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~ 209 (287)
++.|++.+.++.|++.|+++.++|+.... ...+.+..|+-
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii 696 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIV 696 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 46799999999999999999999998877 78899999984
No 200
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=96.13 E-value=0.018 Score=59.17 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=34.0
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCC
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNC 208 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl 208 (287)
++.||+.+.++.|++.|+++.++|+.... +..+....|+
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~i 670 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRL 670 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCC
Confidence 56799999999999999999999998766 6777777776
No 201
>PRK10444 UMP phosphatase; Provisional
Probab=96.07 E-value=0.065 Score=45.66 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=38.0
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc----hHHHHHhcCCcCccceEEec
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR----LRPVLRALNCDHWFDAVAVS 218 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~----~~~~l~~~gl~~~f~~~~~~ 218 (287)
++||+.++++.|+++|.+++++||.+.. +...|+.+|+.--.+.++++
T Consensus 18 ~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts 69 (248)
T PRK10444 18 AVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTS 69 (248)
T ss_pred eCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecH
Confidence 5699999999999999999999997764 45667778885445566655
No 202
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=95.86 E-value=0.11 Score=48.06 Aligned_cols=87 Identities=11% Similarity=0.069 Sum_probs=50.6
Q ss_pred HHHHHHHcCCeEEEEeCCCcc-hHHHHHh-cCCcCccc--------eEEecccCCCCCCCHHH-HHHHHHHcCCCCCCEE
Q 023114 178 VFKAIRKAGVKLAVVSNFDTR-LRPVLRA-LNCDHWFD--------AVAVSAEVEAEKPNPTI-FLKACDLLGVKPEDAV 246 (287)
Q Consensus 178 ll~~L~~~g~~i~ivSn~~~~-~~~~l~~-~gl~~~f~--------~~~~~~~~~~~KP~~~~-~~~~~~~l~~~p~~~l 246 (287)
.++..++.| +++|+|..++. ++.+++. +|.+.-.- ..+++--. ++.-.+- ...+.+.+|- ....+
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~D~VvGTEL~v~~~G~~TG~~~--G~n~~ek~~~rl~~~~g~-~~~~v 176 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRADEVIGSELVVNRFGFATGFIR--GTDVDQSVANRVANLFVD-ERPQL 176 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCCceEEeeeEEEeeccEEEEEEe--cCccHHHHHHHHHHHhCc-cCcee
Confidence 555667777 99999999999 8999988 78653321 11111111 2222233 3334444663 23478
Q ss_pred EEcCCchhhHHHHHHcCceEEEECC
Q 023114 247 HVGDDRRNDVWGARDAGCDAWLWGS 271 (287)
Q Consensus 247 ~VGDs~~~Di~~a~~aG~~~i~v~~ 271 (287)
-+||+ ..|-.-..- |+.+++.+
T Consensus 177 g~~~~-~~~~~f~~~--ck~~~~~~ 198 (498)
T PLN02499 177 GLGRI-SASSSFLSL--CKEQIHPP 198 (498)
T ss_pred cccCC-cccchhhhh--CceEEecC
Confidence 89996 667665553 55666544
No 203
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=95.65 E-value=0.23 Score=42.28 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=39.8
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCC-c--c-hHHHHHhcCCcCccceEEecc
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFD-T--R-LRPVLRALNCDHWFDAVAVSA 219 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~-~--~-~~~~l~~~gl~~~f~~~~~~~ 219 (287)
++|++.++++.|+++|.+++++||.. + . +...++.+|++...+.++++.
T Consensus 18 ~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~ 70 (249)
T TIGR01457 18 RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTAS 70 (249)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHH
Confidence 45899999999999999999999844 2 2 577888999987667777764
No 204
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=95.59 E-value=0.13 Score=39.76 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=32.6
Q ss_pred CCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCC
Q 023114 240 VKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHS 275 (287)
Q Consensus 240 ~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~ 275 (287)
.++++++||||-.-.||.+|...|..+++..+++..
T Consensus 137 ~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~~ 172 (190)
T KOG2961|consen 137 CTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVRA 172 (190)
T ss_pred CChhHeEEEccchhhhHhhhhhccceeEEecccccc
Confidence 688999999999999999999999999999887543
No 205
>PLN03190 aminophospholipid translocase; Provisional
Probab=95.31 E-value=0.11 Score=53.87 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=31.5
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCC
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNC 208 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl 208 (287)
++.+|+.+.++.|++.|+++.++|+.... ...+....|+
T Consensus 726 ~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA~s~~L 765 (1178)
T PLN03190 726 KLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKL 765 (1178)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHhCC
Confidence 57899999999999999999999997766 4555554444
No 206
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=95.15 E-value=0.13 Score=42.95 Aligned_cols=61 Identities=16% Similarity=0.088 Sum_probs=50.2
Q ss_pred CCcCcc--ceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 207 NCDHWF--DAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 207 gl~~~f--~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
|++.+| ++++++-.++ |...|+++.+++|-+.-.-++||| +...-.+|+..+++++-+...
T Consensus 197 ~L~~~f~ieNIYSa~kvG----K~~cFe~I~~Rfg~p~~~f~~IGD-G~eEe~aAk~l~wPFw~I~~h 259 (274)
T TIGR01658 197 RLDTIFRIENVYSSIKVG----KLQCFKWIKERFGHPKVRFCAIGD-GWEECTAAQAMNWPFVKIDLH 259 (274)
T ss_pred ccCCccccccccchhhcc----hHHHHHHHHHHhCCCCceEEEeCC-ChhHHHHHHhcCCCeEEeecC
Confidence 555554 6777776543 478999999999987788999999 599999999999999998874
No 207
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=95.00 E-value=0.25 Score=41.83 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=48.4
Q ss_pred CeEEEEeCCCcc----hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHc
Q 023114 187 VKLAVVSNFDTR----LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDA 262 (287)
Q Consensus 187 ~~i~ivSn~~~~----~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~a 262 (287)
++++|||..+.. +.+.|+..|+. +|..++-. +-||. .+++.++ |. ||++|. ..-++.|. .
T Consensus 187 iRtalVTAR~apah~RvI~TLr~Wgv~--vDEafFLg----G~~K~----~vL~~~~--ph--IFFDDQ-~~H~~~a~-~ 250 (264)
T PF06189_consen 187 IRTALVTARSAPAHERVIRTLRSWGVR--VDEAFFLG----GLPKG----PVLKAFR--PH--IFFDDQ-DGHLESAS-K 250 (264)
T ss_pred eEEEEEEcCCCchhHHHHHHHHHcCCc--HhHHHHhC----CCchh----HHHHhhC--CC--EeecCc-hhhhhHhh-c
Confidence 789999975543 45566677775 33322211 22332 3455555 33 899997 88899988 8
Q ss_pred CceEEEECCCCCC
Q 023114 263 GCDAWLWGSDVHS 275 (287)
Q Consensus 263 G~~~i~v~~~~~~ 275 (287)
++.+.+|..++.|
T Consensus 251 ~vps~hVP~gv~n 263 (264)
T PF06189_consen 251 VVPSGHVPYGVAN 263 (264)
T ss_pred CCCEEeccCCcCC
Confidence 9999999988765
No 208
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=0.2 Score=43.60 Aligned_cols=84 Identities=18% Similarity=0.128 Sum_probs=58.2
Q ss_pred ccCCccHHHHHHHHHHcC-CeEEEEeCCCcch----HHHHHhcCC----------cCccceEEecccCCCCCCCHHHHHH
Q 023114 169 HLCDPEAEKVFKAIRKAG-VKLAVVSNFDTRL----RPVLRALNC----------DHWFDAVAVSAEVEAEKPNPTIFLK 233 (287)
Q Consensus 169 ~~~~pg~~~ll~~L~~~g-~~i~ivSn~~~~~----~~~l~~~gl----------~~~f~~~~~~~~~~~~KP~~~~~~~ 233 (287)
..++||+..+++.|.+.| .++.-+||++..+ ..++...++ ...++.++.+... -|...+..
T Consensus 195 r~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sga~----rK~~~l~n 270 (373)
T COG4850 195 RQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIESGAA----RKGQSLRN 270 (373)
T ss_pred cCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCCCCchhHhhcCCcccccccchhh----hcccHHHH
Confidence 347899999999999987 8999999998763 333333332 2224555444322 23446677
Q ss_pred HHHHcCCCCCCEEEEcCCchhhHHH
Q 023114 234 ACDLLGVKPEDAVHVGDDRRNDVWG 258 (287)
Q Consensus 234 ~~~~l~~~p~~~l~VGDs~~~Di~~ 258 (287)
++.++.- .+.+.||||+..|.+.
T Consensus 271 il~~~p~--~kfvLVGDsGE~DpeI 293 (373)
T COG4850 271 ILRRYPD--RKFVLVGDSGEHDPEI 293 (373)
T ss_pred HHHhCCC--ceEEEecCCCCcCHHH
Confidence 7777653 5799999999999864
No 209
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=94.08 E-value=0.41 Score=40.33 Aligned_cols=83 Identities=17% Similarity=0.121 Sum_probs=54.0
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc----hHHHHHh-cCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCE
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR----LRPVLRA-LNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDA 245 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~----~~~~l~~-~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~ 245 (287)
++|++.+.+..++++|+++.++||.... ....+.. +|+.-..+.++++.. .....+++.. +...+
T Consensus 15 ~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~---------~~~~~l~~~~-~~~~v 84 (236)
T TIGR01460 15 PIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGS---------VTKDLLRQRF-EGEKV 84 (236)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHH---------HHHHHHHHhC-CCCEE
Confidence 4699999999999999999999987633 4555666 787655666766542 2222222222 22457
Q ss_pred EEEcCCchhhHHHHHHcCce
Q 023114 246 VHVGDDRRNDVWGARDAGCD 265 (287)
Q Consensus 246 l~VGDs~~~Di~~a~~aG~~ 265 (287)
+++|. ....+..+..|+.
T Consensus 85 ~v~G~--~~~~~~l~~~g~~ 102 (236)
T TIGR01460 85 YVIGV--GELRESLEGLGFR 102 (236)
T ss_pred EEECC--HHHHHHHHHcCCc
Confidence 77885 3445566676653
No 210
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=93.98 E-value=0.11 Score=44.48 Aligned_cols=48 Identities=29% Similarity=0.311 Sum_probs=38.5
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc----hHHHHHhcCCcCccceEEec
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR----LRPVLRALNCDHWFDAVAVS 218 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~----~~~~l~~~gl~~~f~~~~~~ 218 (287)
++|++.+.++.|+++|++++++||.+.. +...++.+|++--.+.++++
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts 73 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTP 73 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcH
Confidence 4699999999999999999999996544 56778888986445566665
No 211
>PLN03017 trehalose-phosphatase
Probab=93.51 E-value=0.13 Score=46.09 Aligned_cols=56 Identities=21% Similarity=0.136 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHcCCCC---CCEEEEcCCchhhHHHHHHc---C-ceEEEECC--C-------CCCHHHHHHHh
Q 023114 227 NPTIFLKACDLLGVKP---EDAVHVGDDRRNDVWGARDA---G-CDAWLWGS--D-------VHSFKEVAQRI 283 (287)
Q Consensus 227 ~~~~~~~~~~~l~~~p---~~~l~VGDs~~~Di~~a~~a---G-~~~i~v~~--~-------~~~~~el~~~l 283 (287)
|......+++.++... .-.+++||+ ..|-.+-+.+ | -.+|.|+. + ..+..|+.++|
T Consensus 284 KG~Av~~LL~~l~~~~~~~~~pvyiGDD-~TDEDaF~~L~~~~~G~gI~VG~~~k~T~A~y~L~dp~eV~~fL 355 (366)
T PLN03017 284 KGKALEFLLESLGFGNTNNVFPVYIGDD-RTDEDAFKMLRDRGEGFGILVSKFPKDTDASYSLQDPSEVMDFL 355 (366)
T ss_pred HHHHHHHHHHhcccccCCCceEEEeCCC-CccHHHHHHHhhcCCceEEEECCCCCCCcceEeCCCHHHHHHHH
Confidence 4455666777766542 248999998 9998776655 2 34688873 2 55666666655
No 212
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=93.28 E-value=0.074 Score=44.85 Aligned_cols=91 Identities=19% Similarity=0.187 Sum_probs=52.8
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcC-c---cceEEecccCCC----CCC-------CHHHHH-
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDH-W---FDAVAVSAEVEA----EKP-------NPTIFL- 232 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~-~---f~~~~~~~~~~~----~KP-------~~~~~~- 232 (287)
.+.+|+.++++.|.++++++.|+|.|-.. +..++++.|... . +.+...-++.+. ..| +...+.
T Consensus 90 ~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~l~~ 169 (246)
T PF05822_consen 90 MLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESALED 169 (246)
T ss_dssp -B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHHHTT
T ss_pred hhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCcccccC
Confidence 47799999999999999999999999888 688888876421 1 122222222111 122 111111
Q ss_pred -HHHHHcCCCCCCEEEEcCCchhhHHHHHHc
Q 023114 233 -KACDLLGVKPEDAVHVGDDRRNDVWGARDA 262 (287)
Q Consensus 233 -~~~~~l~~~p~~~l~VGDs~~~Di~~a~~a 262 (287)
...+++. ...+++..||| ..|+.|+...
T Consensus 170 ~~~~~~~~-~R~NvlLlGDs-lgD~~Ma~G~ 198 (246)
T PF05822_consen 170 SPYFKQLK-KRTNVLLLGDS-LGDLHMADGV 198 (246)
T ss_dssp HHHHHCTT-T--EEEEEESS-SGGGGTTTT-
T ss_pred chHHHHhc-cCCcEEEecCc-cCChHhhcCC
Confidence 1112232 34679999998 9999998766
No 213
>PLN02580 trehalose-phosphatase
Probab=93.14 E-value=0.15 Score=46.15 Aligned_cols=55 Identities=24% Similarity=0.208 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHcCCCCCC---EEEEcCCchhhHHHHHHc-----CceEEEECCC---------CCCHHHHHHHh
Q 023114 227 NPTIFLKACDLLGVKPED---AVHVGDDRRNDVWGARDA-----GCDAWLWGSD---------VHSFKEVAQRI 283 (287)
Q Consensus 227 ~~~~~~~~~~~l~~~p~~---~l~VGDs~~~Di~~a~~a-----G~~~i~v~~~---------~~~~~el~~~l 283 (287)
|......++++++++..+ .++|||+ .||..|-+.+ | .+|.|+++ ..+..|+.++|
T Consensus 302 KG~Av~~Ll~~~g~~~~d~~~pi~iGDD-~TDedmF~~L~~~~~G-~~I~Vgn~~~~t~A~y~L~dp~eV~~~L 373 (384)
T PLN02580 302 KGKAVEFLLESLGLSNCDDVLPIYIGDD-RTDEDAFKVLREGNRG-YGILVSSVPKESNAFYSLRDPSEVMEFL 373 (384)
T ss_pred HHHHHHHHHHhcCCCcccceeEEEECCC-chHHHHHHhhhccCCc-eEEEEecCCCCccceEEcCCHHHHHHHH
Confidence 566677888888877653 3899998 9999999863 5 35666653 55666665554
No 214
>PLN02151 trehalose-phosphatase
Probab=93.05 E-value=0.16 Score=45.43 Aligned_cols=55 Identities=18% Similarity=0.080 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCCCC---CEEEEcCCchhhHHHHHHcC----ceEEEECC--C-------CCCHHHHHHHh
Q 023114 228 PTIFLKACDLLGVKPE---DAVHVGDDRRNDVWGARDAG----CDAWLWGS--D-------VHSFKEVAQRI 283 (287)
Q Consensus 228 ~~~~~~~~~~l~~~p~---~~l~VGDs~~~Di~~a~~aG----~~~i~v~~--~-------~~~~~el~~~l 283 (287)
......+++.++.... -.+++||+ .+|-.+-+... -.+|.|+. + ..+..|+.++|
T Consensus 271 G~Av~~Ll~~~~~~~~~~~~pvyiGDD-~TDEDaF~~L~~~~~G~gI~Vg~~~k~T~A~y~L~dp~eV~~~L 341 (354)
T PLN02151 271 GKALEFLLESLGYANCTDVFPIYIGDD-RTDEDAFKILRDKKQGLGILVSKYAKETNASYSLQEPDEVMEFL 341 (354)
T ss_pred HHHHHHHHHhcccccCCCCeEEEEcCC-CcHHHHHHHHhhcCCCccEEeccCCCCCcceEeCCCHHHHHHHH
Confidence 3444555555543321 27999998 99988766542 13466763 1 55666665554
No 215
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=92.88 E-value=0.33 Score=47.44 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=66.3
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEec--------------cc-----CCCCCCCH-
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVS--------------AE-----VEAEKPNP- 228 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~--------------~~-----~~~~KP~~- 228 (287)
++.|+.++.++.|.+.+.+++-+|+.+.- .-.+.+.+|+.+--.-++.- |+ ...+|++.
T Consensus 675 PlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v~iv~k~~~vl~~~~~~~~~~~~w~s~d~t~~lp~~p~~~~~~ 754 (1160)
T KOG0209|consen 675 PLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEVGIVEKPTLVLDLPEEGDGNQLEWVSVDGTIVLPLKPGKKKTL 754 (1160)
T ss_pred CCCccHHHHHHHHhccCceEEEEeCCCccchheehheeeeeccCceeeccCccCCCceeeEecCCCceeecCCCCccchh
Confidence 45699999999999999999999997665 56666666664331111111 10 11122222
Q ss_pred --------------------------------------HHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEEC
Q 023114 229 --------------------------------------TIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWG 270 (287)
Q Consensus 229 --------------------------------------~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~ 270 (287)
..-+.++..+.--.--++|.|| +.||+.+.+.|.....+.+
T Consensus 755 l~~~~dlcitG~~l~~l~~~~~l~~l~~hv~VfARvaP~QKE~ii~tlK~~Gy~TLMCGD-GTNDVGALK~AhVGVALL~ 833 (1160)
T KOG0209|consen 755 LAETHDLCITGSALDHLQATDQLRRLIPHVWVFARVAPKQKEFIITTLKKLGYVTLMCGD-GTNDVGALKQAHVGVALLN 833 (1160)
T ss_pred hhhhhhhhcchhHHHHHhhhHHHHHhhhheeEEEeeChhhHHHHHHHHHhcCeEEEEecC-CCcchhhhhhcccceehhc
Confidence 1112233333222346899999 5999999999999988888
Q ss_pred CCCC
Q 023114 271 SDVH 274 (287)
Q Consensus 271 ~~~~ 274 (287)
+..+
T Consensus 834 ~~~e 837 (1160)
T KOG0209|consen 834 NPEE 837 (1160)
T ss_pred CChh
Confidence 7653
No 216
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=92.50 E-value=1.5 Score=38.02 Aligned_cols=88 Identities=11% Similarity=0.082 Sum_probs=55.4
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc----hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEE
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR----LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAV 246 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~----~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l 246 (287)
+.||+.+.++.|++.|-.+.++||.+.. ..++++.+|+.. +..+++ .-|...+..++-+. ....+.++
T Consensus 39 ~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~-----v~e~~i--~ssa~~~a~ylk~~-~~~~k~Vy 110 (306)
T KOG2882|consen 39 PIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS-----VKEENI--FSSAYAIADYLKKR-KPFGKKVY 110 (306)
T ss_pred CCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc-----cCcccc--cChHHHHHHHHHHh-CcCCCeEE
Confidence 5799999999999999999999997655 245567778764 222221 12222333333233 24456788
Q ss_pred EEcCCchhhHHHHHHcCceEEE
Q 023114 247 HVGDDRRNDVWGARDAGCDAWL 268 (287)
Q Consensus 247 ~VGDs~~~Di~~a~~aG~~~i~ 268 (287)
++|-. .=-+-++++|+....
T Consensus 111 vig~~--gi~~eL~~aG~~~~g 130 (306)
T KOG2882|consen 111 VIGEE--GIREELDEAGFEYFG 130 (306)
T ss_pred Eecch--hhhHHHHHcCceeec
Confidence 88854 334457888855444
No 217
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.48 E-value=0.22 Score=41.88 Aligned_cols=121 Identities=15% Similarity=0.115 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHh-cCCcCc---cceEEecccCC----
Q 023114 152 SQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRA-LNCDHW---FDAVAVSAEVE---- 222 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~-~gl~~~---f~~~~~~~~~~---- 222 (287)
...++++..+..- .+..|..++++.|+++++++.|+|.+... ++.++.+ .++... ..+....++.+
T Consensus 125 k~~I~~~Va~s~i-----~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~pn~k~vSN~~~F~edg~l~g 199 (298)
T KOG3128|consen 125 KNAIDDIVAESNI-----ALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCG 199 (298)
T ss_pred HHHHHHHHHHhhH-----HHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCccHHhhhhhhhhcccchhhh
Confidence 4555555544331 24589999999999999999999998877 5655544 343321 11211112111
Q ss_pred CCCC-------CHHHHHHHHHHcC--CCCCCEEEEcCCchhhHHHHHHcCce--EEEECCCCCCHHH
Q 023114 223 AEKP-------NPTIFLKACDLLG--VKPEDAVHVGDDRRNDVWGARDAGCD--AWLWGSDVHSFKE 278 (287)
Q Consensus 223 ~~KP-------~~~~~~~~~~~l~--~~p~~~l~VGDs~~~Di~~a~~aG~~--~i~v~~~~~~~~e 278 (287)
..+| +...+....+.+. -....+++-||| .-|+.|+..+--- ...++......+|
T Consensus 200 F~~~Lihtfnkn~~v~~~~s~yf~~~~~~~nVillGds-igdl~ma~gv~~~~~iLkig~l~d~vee 265 (298)
T KOG3128|consen 200 FSQPLIHTFNKNSSVLQNESEYFHQLAGRVNVILLGDS-IGDLHMADGVPRVGHILKIGYLNDSVEE 265 (298)
T ss_pred hhHHHHHHHccchHHHHhhhHHHhhccCCceEEEeccc-cccchhhcCCcccccceeeecccchHHH
Confidence 1222 2233444455554 245689999998 9999988644221 1344444555555
No 218
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=92.38 E-value=0.18 Score=38.37 Aligned_cols=92 Identities=11% Similarity=0.117 Sum_probs=54.1
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCC---CcchHH----HHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCC
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNF---DTRLRP----VLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPE 243 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~---~~~~~~----~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~ 243 (287)
+.|++.+.++.|-+. |.++|+|.. ++.... +.+.+-+-++-..++|+.- |+- .
T Consensus 69 V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgnK------------------niv-k 128 (180)
T COG4502 69 VQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGNK------------------NIV-K 128 (180)
T ss_pred ccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecCC------------------CeE-E
Confidence 679999999999988 899999965 333433 3344444444344555431 110 1
Q ss_pred CEEEEcCCchhhHHHHHHcCceEEEECCC-------CCCHHHHHHHh
Q 023114 244 DAVHVGDDRRNDVWGARDAGCDAWLWGSD-------VHSFKEVAQRI 283 (287)
Q Consensus 244 ~~l~VGDs~~~Di~~a~~aG~~~i~v~~~-------~~~~~el~~~l 283 (287)
.=++|.|. +..++.-+...+-.=+..+. +.+|+|+.+.+
T Consensus 129 aDilIDDn-p~nLE~F~G~kIlFdA~HN~nenRF~Rv~~W~e~eq~l 174 (180)
T COG4502 129 ADILIDDN-PLNLENFKGNKILFDAHHNKNENRFVRVRDWYEAEQAL 174 (180)
T ss_pred eeEEecCC-chhhhhccCceEEEecccccCccceeeeccHHHHHHHH
Confidence 12678885 77777655333222111111 77888887543
No 219
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=92.06 E-value=0.39 Score=47.10 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=69.9
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccc--eEEecccCCC------------------CCC-C
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFD--AVAVSAEVEA------------------EKP-N 227 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~--~~~~~~~~~~------------------~KP-~ 227 (287)
++.||+++.++.++..|+++--||+.+-. .+.+....||-..=+ ..+.+.+... .-| +
T Consensus 647 PvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP~D 726 (1034)
T KOG0204|consen 647 PVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSPND 726 (1034)
T ss_pred CCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCCch
Confidence 56799999999999999999999998877 788999999843322 2333333221 112 2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHH
Q 023114 228 PTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQ 281 (287)
Q Consensus 228 ~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~ 281 (287)
...+.+.+++.| +=+.+-|| +.||-.+.+.|-....|=-.|.+-.+|-.+
T Consensus 727 K~lLVk~L~~~g---~VVAVTGD-GTNDaPALkeADVGlAMGIaGTeVAKEaSD 776 (1034)
T KOG0204|consen 727 KHLLVKGLIKQG---EVVAVTGD-GTNDAPALKEADVGLAMGIAGTEVAKEASD 776 (1034)
T ss_pred HHHHHHHHHhcC---cEEEEecC-CCCCchhhhhcccchhccccchhhhhhhCC
Confidence 233444444333 33455688 699999999998775443333444444443
No 220
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=91.49 E-value=1 Score=36.97 Aligned_cols=80 Identities=25% Similarity=0.293 Sum_probs=50.0
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc----hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEE
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR----LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVH 247 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~----~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~ 247 (287)
.||..|.++.|+.++.++-.|||..++ +...|+++|++ +..+++.. |-| ....++++-++.| -+.
T Consensus 25 vpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~------v~eeei~t--sl~-aa~~~~~~~~lrP--~l~ 93 (262)
T KOG3040|consen 25 VPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD------VSEEEIFT--SLP-AARQYLEENQLRP--YLI 93 (262)
T ss_pred CCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC------ccHHHhcC--ccH-HHHHHHHhcCCCc--eEE
Confidence 599999999999988999999997655 56778888886 22222222 222 2233444445544 355
Q ss_pred EcCCchhhHHHHHHc
Q 023114 248 VGDDRRNDVWGARDA 262 (287)
Q Consensus 248 VGDs~~~Di~~a~~a 262 (287)
|.|+...|......-
T Consensus 94 v~d~a~~dF~gidTs 108 (262)
T KOG3040|consen 94 VDDDALEDFDGIDTS 108 (262)
T ss_pred EcccchhhCCCccCC
Confidence 555545555444433
No 221
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=91.47 E-value=2.4 Score=43.75 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=28.5
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHh
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRA 205 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~ 205 (287)
++-.||.+.++.|++.|+|+.++|+.-.+ +..+.-.
T Consensus 651 kLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~s 687 (1151)
T KOG0206|consen 651 KLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYS 687 (1151)
T ss_pred hhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHh
Confidence 46789999999999999999999987555 3444333
No 222
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=90.62 E-value=1.2 Score=40.11 Aligned_cols=99 Identities=19% Similarity=0.224 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHH---hcCCcCccceEEeccc-------------C--C------------
Q 023114 174 EAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLR---ALNCDHWFDAVAVSAE-------------V--E------------ 222 (287)
Q Consensus 174 g~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~---~~gl~~~f~~~~~~~~-------------~--~------------ 222 (287)
....++..++..|-++.+.||+... ...... ..++..+|+.++.... + .
T Consensus 202 ~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~~p 281 (424)
T KOG2469|consen 202 TIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNTGP 281 (424)
T ss_pred ccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccccCCc
Confidence 3444889999999999999998765 232222 2467888888776631 0 0
Q ss_pred ---CCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHH-HHHHcCceEEEECCC
Q 023114 223 ---AEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVW-GARDAGCDAWLWGSD 272 (287)
Q Consensus 223 ---~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~-~a~~aG~~~i~v~~~ 272 (287)
.+.+++.....+++.++....++++|||+.-.||. .-+.-|+++++|..+
T Consensus 282 ~e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~pe 335 (424)
T KOG2469|consen 282 LEQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAPE 335 (424)
T ss_pred chhcccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEehh
Confidence 13445567788999999999999999999666653 457789999888775
No 223
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=90.58 E-value=0.41 Score=41.10 Aligned_cols=45 Identities=16% Similarity=0.015 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcC---ceEEEECCC
Q 023114 227 NPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAG---CDAWLWGSD 272 (287)
Q Consensus 227 ~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG---~~~i~v~~~ 272 (287)
|...+.++++++.....-+++.||+ ..|=.+-.... -.++-++.+
T Consensus 183 KG~a~~~i~~~~~~~~~~~~~aGDD-~TDE~~F~~v~~~~~~~v~v~~~ 230 (266)
T COG1877 183 KGAAIKYIMDELPFDGRFPIFAGDD-LTDEDAFAAVNKLDSITVKVGVG 230 (266)
T ss_pred hHHHHHHHHhcCCCCCCcceecCCC-CccHHHHHhhccCCCceEEecCC
Confidence 6666777777777665668899997 77765555554 445555543
No 224
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=90.29 E-value=1.5 Score=32.93 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=54.3
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc--hHHHHHhcCCcCc---------cceEEecccCCCCCCCHHHHHHHHHHcC
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR--LRPVLRALNCDHW---------FDAVAVSAEVEAEKPNPTIFLKACDLLG 239 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~--~~~~l~~~gl~~~---------f~~~~~~~~~~~~KP~~~~~~~~~~~l~ 239 (287)
+|++++..|..|+++|+.++++|++... +...|+.+.+... |+.+..++.. +-..|...-+.-|
T Consensus 45 fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~Gvlkps~e~ft~~~~g~gs-----klghfke~~n~s~ 119 (144)
T KOG4549|consen 45 FYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQTGVLKPSLEEFTFEAVGDGS-----KLGHFKEFTNNSN 119 (144)
T ss_pred eccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCcccccchhhhcCceeeecCcc-----cchhHHHHhhccC
Confidence 6899999999999999999999998766 5778887765432 3333333322 2334566666677
Q ss_pred CCCCCEEEEcCC
Q 023114 240 VKPEDAVHVGDD 251 (287)
Q Consensus 240 ~~p~~~l~VGDs 251 (287)
+.-.+..++.|-
T Consensus 120 ~~~k~~~~fdDe 131 (144)
T KOG4549|consen 120 SIEKNKQVFDDE 131 (144)
T ss_pred cchhceeeeccc
Confidence 777777888874
No 225
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=89.45 E-value=0.61 Score=40.17 Aligned_cols=41 Identities=15% Similarity=0.256 Sum_probs=35.5
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCcc
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWF 212 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f 212 (287)
.|++.+.++.|+++|++++++||.+.. +...++.+|+..++
T Consensus 23 ~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~~~ 64 (273)
T PRK00192 23 YEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLEDPF 64 (273)
T ss_pred cHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCE
Confidence 467889999999999999999999877 78899999987654
No 226
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=88.68 E-value=1.4 Score=39.30 Aligned_cols=89 Identities=13% Similarity=0.169 Sum_probs=60.7
Q ss_pred EEEEeCCCcc---hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCce
Q 023114 189 LAVVSNFDTR---LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCD 265 (287)
Q Consensus 189 i~ivSn~~~~---~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~ 265 (287)
=++||+..-. +.-+|-.+|-.-.+++|+.+-.++ |...|+++.+++|-+ -.-++||| +...-.+|++..|+
T Consensus 373 nVlvTttqLipalaKvLL~gLg~~fpiENIYSa~kiG----KescFerI~~RFg~K-~~yvvIgd-G~eee~aAK~ln~P 446 (468)
T KOG3107|consen 373 NVLVTTTQLIPALAKVLLYGLGSSFPIENIYSATKIG----KESCFERIQSRFGRK-VVYVVIGD-GVEEEQAAKALNMP 446 (468)
T ss_pred EEEEeccchhHHHHHHHHHhcCCcccchhhhhhhhcc----HHHHHHHHHHHhCCc-eEEEEecC-cHHHHHHHHhhCCc
Confidence 3455654322 233334444333347777765544 367999999999974 45789999 58999999999999
Q ss_pred EEEECCCCCCHHHHHHHhC
Q 023114 266 AWLWGSDVHSFKEVAQRIG 284 (287)
Q Consensus 266 ~i~v~~~~~~~~el~~~l~ 284 (287)
+|-+.. ..++..+-.-|.
T Consensus 447 fwrI~~-h~Dl~~l~~aL~ 464 (468)
T KOG3107|consen 447 FWRISS-HSDLDALYSALE 464 (468)
T ss_pred eEeecc-CccHHHHhhhcc
Confidence 999887 556666555443
No 227
>PLN02580 trehalose-phosphatase
Probab=87.81 E-value=1.8 Score=39.23 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=25.7
Q ss_pred hHHHHHhcCCcCccc--eEEecccCCCCCCCHHHHHHHHHH-cCCCCCCEEEEcC
Q 023114 199 LRPVLRALNCDHWFD--AVAVSAEVEAEKPNPTIFLKACDL-LGVKPEDAVHVGD 250 (287)
Q Consensus 199 ~~~~l~~~gl~~~f~--~~~~~~~~~~~KP~~~~~~~~~~~-l~~~p~~~l~VGD 250 (287)
++.+++.+|+...-+ .++.+|+.. +.++|..+-+. .| -.|.||.
T Consensus 306 v~~Ll~~~g~~~~d~~~pi~iGDD~T----DedmF~~L~~~~~G----~~I~Vgn 352 (384)
T PLN02580 306 VEFLLESLGLSNCDDVLPIYIGDDRT----DEDAFKVLREGNRG----YGILVSS 352 (384)
T ss_pred HHHHHHhcCCCcccceeEEEECCCch----HHHHHHhhhccCCc----eEEEEec
Confidence 577888888764311 256666543 56677765432 13 2466775
No 228
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=87.61 E-value=0.96 Score=37.84 Aligned_cols=39 Identities=13% Similarity=0.133 Sum_probs=34.0
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCc
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHW 211 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~ 211 (287)
|+..+.++.|+++|++++++|+.+.. +..+++.+|+..+
T Consensus 18 ~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~~ 57 (225)
T TIGR02461 18 GPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVEPP 57 (225)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCc
Confidence 66889999999999999999998877 7888999998653
No 229
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=87.48 E-value=1.1 Score=42.66 Aligned_cols=98 Identities=21% Similarity=0.248 Sum_probs=57.6
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCC---cc-hHHHHHhcCCc--Cccc-eEEeccc---------CCCCCC---CHHHHHH
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFD---TR-LRPVLRALNCD--HWFD-AVAVSAE---------VEAEKP---NPTIFLK 233 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~---~~-~~~~l~~~gl~--~~f~-~~~~~~~---------~~~~KP---~~~~~~~ 233 (287)
-||.+|....+++||++.-+|... .. .+..|..+.=+ ...+ -++.+.+ +-..|| |-..+..
T Consensus 561 ~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkPe~FKIAcL~D 640 (738)
T KOG2116|consen 561 TGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPDGPVILSPDSLFAALHREVIERKPEVFKIACLTD 640 (738)
T ss_pred hhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCchhhhHHHHHH
Confidence 678888888999999999999743 11 34444443211 1112 2333322 223555 3344445
Q ss_pred HHHHcCCCC-CCEEEEcCCchhhHHHHHHcCceE--EEECC
Q 023114 234 ACDLLGVKP-EDAVHVGDDRRNDVWGARDAGCDA--WLWGS 271 (287)
Q Consensus 234 ~~~~l~~~p-~~~l~VGDs~~~Di~~a~~aG~~~--i~v~~ 271 (287)
+.+.+.-+. .=...||. ..+|+-.=+..|++. |++-+
T Consensus 641 Ik~LF~p~~nPFYAgFGN-R~TDviSY~~VgVP~~RIFtIN 680 (738)
T KOG2116|consen 641 IKNLFPPSGNPFYAGFGN-RITDVISYRQVGVPLSRIFTIN 680 (738)
T ss_pred HHHhcCCCCCceeeecCC-CcccceeeeeecCCccceEEEC
Confidence 555555222 23567999 599999999999886 54444
No 230
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=87.41 E-value=1.3 Score=42.73 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=22.5
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCC
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFD 196 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~ 196 (287)
+..+++..|+.|++.|+||.-+|+..
T Consensus 659 LQ~dVk~tLElLRNAgikiWMLTGDK 684 (1051)
T KOG0210|consen 659 LQDDVKPTLELLRNAGIKIWMLTGDK 684 (1051)
T ss_pred HhhhhHhHHHHHhhcCcEEEEEcCcc
Confidence 45789999999999999999988753
No 231
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=86.32 E-value=1.3 Score=36.53 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=34.2
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCc
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHW 211 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~ 211 (287)
.|...+.++.|++.|++++++|+.+.. +..+++.+++..+
T Consensus 20 ~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~~ 60 (215)
T TIGR01487 20 SERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGP 60 (215)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCCc
Confidence 477889999999999999999998877 7888888887643
No 232
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=85.88 E-value=14 Score=31.24 Aligned_cols=103 Identities=19% Similarity=0.154 Sum_probs=67.0
Q ss_pred CCccHHHHHHHHHHc---CCeEE-EEeCCCcchHHHHHhcCCcCccc--eEEecccCCCCCCCHHHHHHHHHHcCCCCCC
Q 023114 171 CDPEAEKVFKAIRKA---GVKLA-VVSNFDTRLRPVLRALNCDHWFD--AVAVSAEVEAEKPNPTIFLKACDLLGVKPED 244 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~---g~~i~-ivSn~~~~~~~~l~~~gl~~~f~--~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~ 244 (287)
++|+..++++..+.. |+.+. +|++.. ..-+.+..+|..-..- ..+++. .+-.+++.+..+.+..++
T Consensus 105 Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~-~~ar~l~~~G~~~vmPlg~pIGsg---~Gi~~~~~I~~I~e~~~v---- 176 (248)
T cd04728 105 LLPDPIETLKAAEILVKEGFTVLPYCTDDP-VLAKRLEDAGCAAVMPLGSPIGSG---QGLLNPYNLRIIIERADV---- 176 (248)
T ss_pred cccCHHHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhCCC----
Confidence 679999999888776 99999 555554 4444455556543211 222222 234458888888777543
Q ss_pred EEEEcC--CchhhHHHHHHcCceEEEECCCCCC---HHHHHH
Q 023114 245 AVHVGD--DRRNDVWGARDAGCDAWLWGSDVHS---FKEVAQ 281 (287)
Q Consensus 245 ~l~VGD--s~~~Di~~a~~aG~~~i~v~~~~~~---~~el~~ 281 (287)
.+.+|- +.+.|+..+.+.|+..+++++.+.. .....+
T Consensus 177 pVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~ 218 (248)
T cd04728 177 PVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMAR 218 (248)
T ss_pred cEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHH
Confidence 244442 1289999999999999999998655 544443
No 233
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=85.62 E-value=1.6 Score=39.80 Aligned_cols=93 Identities=19% Similarity=0.219 Sum_probs=47.8
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc----hHHHH---HhcCCcCccceEEecc---------cCCCCCCC--HHHHHHH
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR----LRPVL---RALNCDHWFDAVAVSA---------EVEAEKPN--PTIFLKA 234 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~----~~~~l---~~~gl~~~f~~~~~~~---------~~~~~KP~--~~~~~~~ 234 (287)
-||..+.....++||+|.-+|..+.- .+..+ ++-|-.-+=-.++-+. ++-..||. ..+|+.-
T Consensus 406 ~gVAkLYtdI~rNGYkI~YltsR~~Gqa~sTrsylrnieQngykLpdgpviLspd~t~aal~relIlrkpE~FKiayLnd 485 (580)
T COG5083 406 NGVAKLYTDIDRNGYKIKYLTSRSYGQADSTRSYLRNIEQNGYKLPDGPVILSPDRTMAALYRELILRKPEVFKIAYLND 485 (580)
T ss_pred cchhhhhhhhccCceEEEEEecccccchhhhhhHHHhhhhcCccCCCCCEeeccchhhhhhhhhhhhcChHHHHHHHHHH
Confidence 45556666667788888888864321 22222 2222211001112221 22234442 2234444
Q ss_pred HHHcCCCCCCEE-EEcCCchhhHHHHHHcCceE
Q 023114 235 CDLLGVKPEDAV-HVGDDRRNDVWGARDAGCDA 266 (287)
Q Consensus 235 ~~~l~~~p~~~l-~VGDs~~~Di~~a~~aG~~~ 266 (287)
++.+.+.+.-.+ -+|. ...|+..=+..|++.
T Consensus 486 l~slf~e~~PFyAGFGN-riTDvisY~~vgIp~ 517 (580)
T COG5083 486 LKSLFIEFDPFYAGFGN-RITDVISYSNVGIPK 517 (580)
T ss_pred HHHhhCcCChhhccccc-cchhheeeccccCCh
Confidence 455555554333 6899 599999888888774
No 234
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=85.03 E-value=1.3 Score=36.56 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCc
Q 023114 174 EAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCD 209 (287)
Q Consensus 174 g~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~ 209 (287)
..++.+..|+++|++++++||.+.. +..+++.+++.
T Consensus 20 ~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 20 PAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 3678899999999999999999888 78899999986
No 235
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=85.00 E-value=1.6 Score=36.30 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=33.6
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCc
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHW 211 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~ 211 (287)
|...+.|+.|+++|++++++|+.+.. +...++.+++..+
T Consensus 23 ~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~ 62 (230)
T PRK01158 23 LKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGP 62 (230)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCc
Confidence 67788899999999999999999877 7888888888654
No 236
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=84.89 E-value=11 Score=31.58 Aligned_cols=95 Identities=20% Similarity=0.221 Sum_probs=61.9
Q ss_pred CCccHHHHHH---HHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEEecccCC--CCCCCHHHHHHHHHHcCCCCCCE
Q 023114 171 CDPEAEKVFK---AIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAEVE--AEKPNPTIFLKACDLLGVKPEDA 245 (287)
Q Consensus 171 ~~pg~~~ll~---~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~~--~~KP~~~~~~~~~~~l~~~p~~~ 245 (287)
++|+..++++ .|.+.|+.|.-.++.+-.+-+.|+..|.. ...--+.-++ .+--++..+..++++.+++- +
T Consensus 105 L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~Gca---avMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPv--I 179 (247)
T PF05690_consen 105 LLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCA---AVMPLGSPIGSGRGIQNPYNLRIIIERADVPV--I 179 (247)
T ss_dssp --B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-S---EBEEBSSSTTT---SSTHHHHHHHHHHGSSSB--E
T ss_pred cCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCC---EEEecccccccCcCCCCHHHHHHHHHhcCCcE--E
Confidence 5688777765 66778999999999877778888888874 2233333332 45668899999999998742 1
Q ss_pred E--EEcCCchhhHHHHHHcCceEEEECCC
Q 023114 246 V--HVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 246 l--~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
+ -|| .++|...|.+.|+..+++++.
T Consensus 180 vDAGiG--~pSdaa~AMElG~daVLvNTA 206 (247)
T PF05690_consen 180 VDAGIG--TPSDAAQAMELGADAVLVNTA 206 (247)
T ss_dssp EES-----SHHHHHHHHHTT-SEEEESHH
T ss_pred EeCCCC--CHHHHHHHHHcCCceeehhhH
Confidence 2 133 389999999999999999874
No 237
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=84.50 E-value=24 Score=30.01 Aligned_cols=106 Identities=14% Similarity=0.167 Sum_probs=73.5
Q ss_pred CCccHHHHHH---HHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEEecccC--CCCCCCHHHHHHHHHHcCCCCCCE
Q 023114 171 CDPEAEKVFK---AIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAEV--EAEKPNPTIFLKACDLLGVKPEDA 245 (287)
Q Consensus 171 ~~pg~~~ll~---~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~--~~~KP~~~~~~~~~~~l~~~p~~~ 245 (287)
++|+..++++ .|-+.|+.|.-.++.+-.+-+.|+..|..- ..--+..+ +.+-.+|..++.+++..+++- +
T Consensus 119 LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~a---VMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpV--i 193 (267)
T CHL00162 119 LLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIGCAT---VMPLGSPIGSGQGLQNLLNLQIIIENAKIPV--I 193 (267)
T ss_pred cCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeE---EeeccCcccCCCCCCCHHHHHHHHHcCCCcE--E
Confidence 5688777775 566789999999988777788888888642 22222222 346668899999999877531 2
Q ss_pred EEEcCCchhhHHHHHHcCceEEEECCC---CCCHHHHHH
Q 023114 246 VHVGDDRRNDVWGARDAGCDAWLWGSD---VHSFKEVAQ 281 (287)
Q Consensus 246 l~VGDs~~~Di~~a~~aG~~~i~v~~~---~~~~~el~~ 281 (287)
+--|=+.++|+..+.+.|+..++++++ ..+..+.++
T Consensus 194 vdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~ 232 (267)
T CHL00162 194 IDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAK 232 (267)
T ss_pred EeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHH
Confidence 222223489999999999999999987 344444443
No 238
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=84.49 E-value=10 Score=33.54 Aligned_cols=97 Identities=21% Similarity=0.152 Sum_probs=64.2
Q ss_pred cCCccHHHHHHHHHHc---CCeEEEEeCCCcchHHHHHhcCCcCc--cceEEecccCCCCCCCHHHHHHHHHHcCCCCCC
Q 023114 170 LCDPEAEKVFKAIRKA---GVKLAVVSNFDTRLRPVLRALNCDHW--FDAVAVSAEVEAEKPNPTIFLKACDLLGVKPED 244 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~---g~~i~ivSn~~~~~~~~l~~~gl~~~--f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~ 244 (287)
.++|+..++++..+.. |+.+.++++.+-..-+.+..+|..-. ....+++ +.+-.+|+.+..+.+...++
T Consensus 178 ~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGs---g~gv~~p~~i~~~~e~~~vp--- 251 (326)
T PRK11840 178 TLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGS---GLGIQNPYTIRLIVEGATVP--- 251 (326)
T ss_pred CcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccC---CCCCCCHHHHHHHHHcCCCc---
Confidence 3579999999888877 99995555444444455555565210 0112221 22334899999999985542
Q ss_pred EEEEcC--CchhhHHHHHHcCceEEEECCCC
Q 023114 245 AVHVGD--DRRNDVWGARDAGCDAWLWGSDV 273 (287)
Q Consensus 245 ~l~VGD--s~~~Di~~a~~aG~~~i~v~~~~ 273 (287)
+.||- +.++|+..|.+.|+..+++++++
T Consensus 252 -VivdAGIg~~sda~~AmelGadgVL~nSaI 281 (326)
T PRK11840 252 -VLVDAGVGTASDAAVAMELGCDGVLMNTAI 281 (326)
T ss_pred -EEEeCCCCCHHHHHHHHHcCCCEEEEccee
Confidence 44432 23899999999999999999874
No 239
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=84.39 E-value=0.12 Score=44.18 Aligned_cols=91 Identities=12% Similarity=0.149 Sum_probs=57.3
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCC-cCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNC-DHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl-~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
..|++.++|..+.+. +.+.+.|.+.+. ..+++..+.= ...+...+..+.+.... ..|.+-+..+|-+..+++.|
T Consensus 132 kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~~RlyR~~C~~~~---g~yvKdls~~~~dL~~viIi 207 (262)
T KOG1605|consen 132 KRPHVDEFLSRVSKW-YELVLFTASLEVYADPLLDILDPDRKIISHRLYRDSCTLKD---GNYVKDLSVLGRDLSKVIIV 207 (262)
T ss_pred cCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHHHHccCCCCeeeeeecccceEeEC---CcEEEEcceeccCcccEEEE
Confidence 369999999999888 889999988777 5666666542 22233333333211100 01111124566688899999
Q ss_pred cCCchhhHHHHHHcCceE
Q 023114 249 GDDRRNDVWGARDAGCDA 266 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~~ 266 (287)
.|| +.-..+=-..|++.
T Consensus 208 DNs-P~sy~~~p~NgIpI 224 (262)
T KOG1605|consen 208 DNS-PQSYRLQPENGIPI 224 (262)
T ss_pred cCC-hHHhccCccCCCcc
Confidence 998 76666666666664
No 240
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=84.05 E-value=1.9 Score=36.59 Aligned_cols=38 Identities=18% Similarity=0.497 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcC
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDH 210 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~ 210 (287)
|...+.+++|+++|++++++|+.+.. +...++.+++..
T Consensus 19 ~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~ 57 (256)
T TIGR00099 19 PSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLDT 57 (256)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCC
Confidence 67788999999999999999999877 788888888763
No 241
>PRK00208 thiG thiazole synthase; Reviewed
Probab=84.04 E-value=19 Score=30.53 Aligned_cols=104 Identities=20% Similarity=0.151 Sum_probs=67.2
Q ss_pred CCccHHHHHHHHHHc---CCeEE-EEeCCCcchHHHHHhcCCcCccc--eEEecccCCCCCCCHHHHHHHHHHcCCCCCC
Q 023114 171 CDPEAEKVFKAIRKA---GVKLA-VVSNFDTRLRPVLRALNCDHWFD--AVAVSAEVEAEKPNPTIFLKACDLLGVKPED 244 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~---g~~i~-ivSn~~~~~~~~l~~~gl~~~f~--~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~ 244 (287)
++|+..++++..+.. |+.+. +|++... .-+.+..+|..-..- ..+++. .+-.+|+.+..+.+..++
T Consensus 105 llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~-~ak~l~~~G~~~vmPlg~pIGsg---~gi~~~~~i~~i~e~~~v---- 176 (250)
T PRK00208 105 LLPDPIETLKAAEILVKEGFVVLPYCTDDPV-LAKRLEEAGCAAVMPLGAPIGSG---LGLLNPYNLRIIIEQADV---- 176 (250)
T ss_pred CCcCHHHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHHcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhcCC----
Confidence 568999998888776 99999 6666543 344455556543211 222322 233357888887777554
Q ss_pred EEEEcC--CchhhHHHHHHcCceEEEECCCCCC---HHHHHHH
Q 023114 245 AVHVGD--DRRNDVWGARDAGCDAWLWGSDVHS---FKEVAQR 282 (287)
Q Consensus 245 ~l~VGD--s~~~Di~~a~~aG~~~i~v~~~~~~---~~el~~~ 282 (287)
.+.+|- +.+.|+..+.+.|+..+++++.+.. .....+.
T Consensus 177 pVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~a 219 (250)
T PRK00208 177 PVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARA 219 (250)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHH
Confidence 244442 1289999999999999999998655 5554443
No 242
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=83.84 E-value=13 Score=31.45 Aligned_cols=93 Identities=17% Similarity=0.118 Sum_probs=54.7
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc---hHHHHHhcCCcCccceEEecccCCCCCCCHHHHH--HHHHHcCCCCCCEEE
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR---LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFL--KACDLLGVKPEDAVH 247 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~---~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~--~~~~~l~~~p~~~l~ 247 (287)
++..++++.++++|.+.+++-|-.+. +..+++. .+.|-.+ +.....-.+=.+.... .-++++ .++..+.
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~---~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~--~~~~~i~ 189 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKL---SPLFIYY-GLRPATGVPLPVSVERNIKRVRNL--VGNKYLV 189 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh---CCCEEEE-EeCCCCCCCchHHHHHHHHHHHHh--cCCCCEE
Confidence 46778999999999999998876554 3445544 2222222 3322221221222222 222332 2233466
Q ss_pred EcCCch---hhHHHHHHcCceEEEECCC
Q 023114 248 VGDDRR---NDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 248 VGDs~~---~Di~~a~~aG~~~i~v~~~ 272 (287)
||= +. .++..+..+|...+.+|+.
T Consensus 190 v~g-GI~~~e~i~~~~~~gaD~vvvGSa 216 (244)
T PRK13125 190 VGF-GLDSPEDARDALSAGADGVVVGTA 216 (244)
T ss_pred EeC-CcCCHHHHHHHHHcCCCEEEECHH
Confidence 665 35 6888888999999999985
No 243
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=83.83 E-value=2 Score=43.57 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=29.4
Q ss_pred CCccHHHHHHHHHHc-CCeEEEEeCCCcc-hHHHHHhcC
Q 023114 171 CDPEAEKVFKAIRKA-GVKLAVVSNFDTR-LRPVLRALN 207 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~-g~~i~ivSn~~~~-~~~~l~~~g 207 (287)
+.|++.++|+.|.+. +..|+|+|+.+.. ++.++...+
T Consensus 623 p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~~ 661 (934)
T PLN03064 623 LHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEFD 661 (934)
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCCC
Confidence 458889999999875 6789999999877 677776543
No 244
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=83.81 E-value=1.8 Score=37.16 Aligned_cols=40 Identities=15% Similarity=0.301 Sum_probs=34.4
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCc
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHW 211 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~ 211 (287)
.|..++.++.|+++|++++++|+.+.. +..+++.+++..+
T Consensus 21 ~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~ 61 (272)
T PRK15126 21 GEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLDAY 61 (272)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCc
Confidence 467788999999999999999999877 7888999988654
No 245
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=83.11 E-value=1.1 Score=38.03 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=12.4
Q ss_pred eEEEEeCCCCccCC
Q 023114 75 KALLVDAAGTLLVP 88 (287)
Q Consensus 75 k~vifD~DGTLid~ 88 (287)
.+|+||+||||++.
T Consensus 4 ~~l~lD~DGTL~~~ 17 (244)
T TIGR00685 4 RAFFFDYDGTLSEI 17 (244)
T ss_pred EEEEEecCccccCC
Confidence 68999999999974
No 246
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=82.98 E-value=3.5 Score=36.51 Aligned_cols=84 Identities=12% Similarity=0.025 Sum_probs=56.2
Q ss_pred CCccHHHHHHHHHHc----CCeEEEEeCCCcc----h-HHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCC
Q 023114 171 CDPEAEKVFKAIRKA----GVKLAVVSNFDTR----L-RPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVK 241 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~----g~~i~ivSn~~~~----~-~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~ 241 (287)
++|++.++++.|+.+ |+++.++||.... . ..+.+.+|+.--.+.++.+. ......+++++
T Consensus 17 ~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~---------~~~~~ll~~~~-- 85 (321)
T TIGR01456 17 PIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSH---------SPYKSLVNKYE-- 85 (321)
T ss_pred ccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhh---------HHHHHHHHHcC--
Confidence 469999999999998 9999999986522 3 33347888853334443332 13344455543
Q ss_pred CCCEEEEcCCchhhHHHHHHcCceEEE
Q 023114 242 PEDAVHVGDDRRNDVWGARDAGCDAWL 268 (287)
Q Consensus 242 p~~~l~VGDs~~~Di~~a~~aG~~~i~ 268 (287)
..+++||-+ .-...++.+|+..+.
T Consensus 86 -~~v~viG~~--~~~~~l~~~G~~~vv 109 (321)
T TIGR01456 86 -KRILAVGTG--SVRGVAEGYGFQNVV 109 (321)
T ss_pred -CceEEEeCh--HHHHHHHHcCCcccc
Confidence 268999975 347778899987653
No 247
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=82.89 E-value=2.3 Score=36.31 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=33.7
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcC
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDH 210 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~ 210 (287)
.|...+.++.++++|++++++|+.+.. +...++.+++..
T Consensus 22 ~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (272)
T PRK10530 22 LPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALDT 61 (272)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCC
Confidence 367788999999999999999999877 788889988764
No 248
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=82.60 E-value=2.2 Score=35.21 Aligned_cols=40 Identities=10% Similarity=0.220 Sum_probs=32.8
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCc
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHW 211 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~ 211 (287)
.|...+.+..|++.|++++++|+.+.. +..+++.+|+..+
T Consensus 17 ~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~~ 57 (225)
T TIGR01482 17 NESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTPDP 57 (225)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCe
Confidence 366778899999999999999998877 7778888886443
No 249
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=82.46 E-value=2 Score=42.95 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=24.9
Q ss_pred CccHHHHHHHHHHc-CCeEEEEeCCCcc-hHHHHHh
Q 023114 172 DPEAEKVFKAIRKA-GVKLAVVSNFDTR-LRPVLRA 205 (287)
Q Consensus 172 ~pg~~~ll~~L~~~-g~~i~ivSn~~~~-~~~~l~~ 205 (287)
.|++.++|+.|.+. +..++|+|+.+.. ++.++..
T Consensus 534 ~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~ 569 (797)
T PLN03063 534 HPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGE 569 (797)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCC
Confidence 46777888888765 5678888888766 6666654
No 250
>PRK10976 putative hydrolase; Provisional
Probab=82.37 E-value=2.3 Score=36.25 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCc
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHW 211 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~ 211 (287)
|...+.++.++++|++++++|+.+.. +...++.+++..+
T Consensus 22 ~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~ 61 (266)
T PRK10976 22 PYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIKSY 61 (266)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCe
Confidence 66778899999999999999998877 7888888888644
No 251
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=82.32 E-value=2.3 Score=36.18 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCc
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHW 211 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~ 211 (287)
+...+.++.|+++|++++++|+.+.. +...++.+|+.++
T Consensus 19 ~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~~~ 58 (256)
T TIGR01486 19 GPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLEDP 58 (256)
T ss_pred hHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCCc
Confidence 44678999999999999999998877 7889999998643
No 252
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=81.79 E-value=1.8 Score=38.71 Aligned_cols=43 Identities=30% Similarity=0.336 Sum_probs=29.1
Q ss_pred HHHHHHHHHHc----CCCCCCEEEEcCC----chhhHHHHHHcCceEEEECCC
Q 023114 228 PTIFLKACDLL----GVKPEDAVHVGDD----RRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 228 ~~~~~~~~~~l----~~~p~~~l~VGDs----~~~Di~~a~~aG~~~i~v~~~ 272 (287)
......+-+-+ +++|++|+||||- +.||. .|+.+|+. +|+.++
T Consensus 351 s~GV~~lQ~y~~~~~~i~~~~tLHVGDQF~s~GaNDf-kaR~a~~t-~WIasP 401 (408)
T PF06437_consen 351 SLGVRALQKYFDPEGGIKPSETLHVGDQFLSAGANDF-KARLACTT-AWIASP 401 (408)
T ss_pred HHhHHHHHHHHHhccCCCccceeeehhhhhccCCcch-hhhhhcee-eEecCH
Confidence 34444444445 7999999999993 35888 56777754 555554
No 253
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=81.10 E-value=2.7 Score=35.82 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=35.1
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCc
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHW 211 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~ 211 (287)
.|..++.|++++++|++++++|+.+.. +..+++.+++..+
T Consensus 22 ~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~~ 62 (264)
T COG0561 22 SPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDGP 62 (264)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCcc
Confidence 367788999999999999999998877 8999999998763
No 254
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=80.09 E-value=33 Score=28.42 Aligned_cols=87 Identities=18% Similarity=0.125 Sum_probs=60.4
Q ss_pred CCeEEEEeCCCcc---hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE---cCCchhhHHHH
Q 023114 186 GVKLAVVSNFDTR---LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV---GDDRRNDVWGA 259 (287)
Q Consensus 186 g~~i~ivSn~~~~---~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V---GDs~~~Di~~a 259 (287)
|.+++|++.++.- +...+....-. ++ -.--|.+..++.++.++|.+.+++-+| |.. .+++...
T Consensus 68 g~~v~VLasGDP~f~G~g~~l~~~~~~---------~~-v~iIPgiSS~q~a~ARlg~~~~~~~~islHgr~-~~~l~~~ 136 (210)
T COG2241 68 GRDVVVLASGDPLFSGVGRLLRRKFSC---------EE-VEIIPGISSVQLAAARLGWPLQDTEVISLHGRP-VELLRPL 136 (210)
T ss_pred CCCeEEEecCCcchhhhHHHHHHhcCc---------cc-eEEecChhHHHHHHHHhCCChHHeEEEEecCCC-HHHHHHH
Confidence 7888888877655 34444332111 11 123488899999999999988877665 453 7777777
Q ss_pred HHcCceEEEECCCCCCHHHHHHHh
Q 023114 260 RDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 260 ~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
..-|-+.++.........++++.|
T Consensus 137 ~~~~~~~vil~~~~~~P~~IA~~L 160 (210)
T COG2241 137 LENGRRLVILTPDDFGPAEIAKLL 160 (210)
T ss_pred HhCCceEEEeCCCCCCHHHHHHHH
Confidence 777777777777777788888776
No 255
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=78.24 E-value=6.9 Score=34.18 Aligned_cols=88 Identities=13% Similarity=0.084 Sum_probs=53.2
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc--hHHHHHhcCCc----------------------------CccceEEecccCC
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR--LRPVLRALNCD----------------------------HWFDAVAVSAEVE 222 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~--~~~~l~~~gl~----------------------------~~f~~~~~~~~~~ 222 (287)
||+..+-..|+..|.++.|+|+.... +...++..+.. .-||.++..+-.+
T Consensus 63 ~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lIaIERpG 142 (291)
T PF14336_consen 63 PGAAALARALQALGKEVVIVTDERCAPVVKAAVRAAGLQGVDKVEIPPFFPDDFAQAFLEADGLLKEPRPDLLIAIERPG 142 (291)
T ss_pred HHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHHHhhCcccccccccccccchhhhHHHHhhccccCCCCEEEEeCCcc
Confidence 78999999999999999999986544 45555544331 1245555554322
Q ss_pred C-------------CCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHH
Q 023114 223 A-------------EKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARD 261 (287)
Q Consensus 223 ~-------------~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~ 261 (287)
. -++....+..+..+...+.-.++.|||. -|.+.|.+-
T Consensus 143 ra~dG~Y~nmrG~~I~~~~a~~D~lf~~a~~~gi~tigIGDG-GNEiGMG~v 193 (291)
T PF14336_consen 143 RAADGNYYNMRGEDISHLVAPLDDLFLAAKEPGIPTIGIGDG-GNEIGMGNV 193 (291)
T ss_pred cCCCCCEecCcCCcCccccccHHHHHHHhhcCCCCEEEECCC-chhcccChH
Confidence 1 1222223344433322233358999995 888877765
No 256
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=77.28 E-value=2.3 Score=34.62 Aligned_cols=29 Identities=31% Similarity=0.318 Sum_probs=22.5
Q ss_pred eEEEEeCCCCccCCCccHHHHHHHHHHHh
Q 023114 75 KALLVDAAGTLLVPSQPMAQIYREIGEKY 103 (287)
Q Consensus 75 k~vifD~DGTLid~~~~~~~~~~~~~~~~ 103 (287)
-+++||+||||........+.+.++++++
T Consensus 12 ~l~lfdvdgtLt~~r~~~~~e~~~~l~~l 40 (252)
T KOG3189|consen 12 TLCLFDVDGTLTPPRQKVTPEMLEFLQKL 40 (252)
T ss_pred eEEEEecCCccccccccCCHHHHHHHHHH
Confidence 47999999999987777666666666654
No 257
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=76.96 E-value=3.9 Score=35.11 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCc
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCD 209 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~ 209 (287)
+..++.+++|+++|++++++|+.+.. +..+++.+|++
T Consensus 27 ~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 27 QPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 55778899999999999999999877 78899999985
No 258
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=75.12 E-value=1.9 Score=33.38 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=13.9
Q ss_pred eEEEEeCCCCccCCCc
Q 023114 75 KALLVDAAGTLLVPSQ 90 (287)
Q Consensus 75 k~vifD~DGTLid~~~ 90 (287)
+.+++|+||||+++..
T Consensus 3 ~~lvldld~tl~~~~~ 18 (148)
T smart00577 3 KTLVLDLDETLVHSTH 18 (148)
T ss_pred cEEEEeCCCCeECCCC
Confidence 6799999999999754
No 259
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=74.96 E-value=8.8 Score=33.48 Aligned_cols=66 Identities=23% Similarity=0.254 Sum_probs=42.9
Q ss_pred ccCCccHHHHHHHHHHcC-CeEEEEeCCCcchHHHHHhcCCcCccceEEecccCC-------CCCCC-HHHHHHHHHHcC
Q 023114 169 HLCDPEAEKVFKAIRKAG-VKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAEVE-------AEKPN-PTIFLKACDLLG 239 (287)
Q Consensus 169 ~~~~pg~~~ll~~L~~~g-~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~~-------~~KP~-~~~~~~~~~~l~ 239 (287)
+-++|...++++.+++.| .+++|+||+.. ..+++.+. .+|.++.+=|.. .-.|. +..++.+++.+.
T Consensus 91 PTLy~~L~elI~~~k~~g~~~tflvTNgsl--pdv~~~L~---~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~ 165 (296)
T COG0731 91 PTLYPNLGELIEEIKKRGKKTTFLVTNGSL--PDVLEELK---LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLE 165 (296)
T ss_pred cccccCHHHHHHHHHhcCCceEEEEeCCCh--HHHHHHhc---cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHH
Confidence 448999999999999999 79999999986 44555544 245544442211 13442 245555555553
No 260
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=74.41 E-value=47 Score=27.64 Aligned_cols=95 Identities=17% Similarity=0.210 Sum_probs=54.7
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcch---HHHHHhcCCcCccceEEecccC-CCCCCCHHHHHHHH---HHc---CCCC
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTRL---RPVLRALNCDHWFDAVAVSAEV-EAEKPNPTIFLKAC---DLL---GVKP 242 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~~---~~~l~~~gl~~~f~~~~~~~~~-~~~KP~~~~~~~~~---~~l---~~~p 242 (287)
+...++++.+|+.|.+.+++-|-.+.+ ..++... +++-. .+.+.. +-.+--+..+..+- +.. |.+
T Consensus 93 ~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~---D~vlv-MtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~- 167 (220)
T PRK08883 93 EHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKV---DLILL-MSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRD- 167 (220)
T ss_pred ccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC---CeEEE-EEecCCCCCceecHhHHHHHHHHHHHHHhcCCC-
Confidence 567899999999999999999876664 4444442 22222 222222 22222333333222 222 211
Q ss_pred CCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 243 EDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 243 ~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
-.+.+.|-=...++....++|...+.+++.
T Consensus 168 ~~I~vdGGI~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 168 IRLEIDGGVKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred eeEEEECCCCHHHHHHHHHcCCCEEEEeHH
Confidence 113344432255788889999999988875
No 261
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=74.20 E-value=36 Score=28.63 Aligned_cols=97 Identities=21% Similarity=0.160 Sum_probs=68.3
Q ss_pred CCccHHHHHH---HHHHcCCeEEEEeCCCcchHHHHHhcCCcCcc--ceEEecccCCCCCCCHHHHHHHHHHcCCCCCCE
Q 023114 171 CDPEAEKVFK---AIRKAGVKLAVVSNFDTRLRPVLRALNCDHWF--DAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDA 245 (287)
Q Consensus 171 ~~pg~~~ll~---~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f--~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~ 245 (287)
+.|+..++++ +|-+.|+.+.-.++.+-.+-+.|+..|..-.. ..-++ .+.+--++..++.++++..++- +
T Consensus 112 LlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIG---Sg~G~~n~~~l~iiie~a~VPv--i 186 (262)
T COG2022 112 LLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIG---SGLGLQNPYNLEIIIEEADVPV--I 186 (262)
T ss_pred cCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEecccccccc---CCcCcCCHHHHHHHHHhCCCCE--E
Confidence 5688887775 56678999999888877777778887764221 11111 1345568899999999997752 2
Q ss_pred EEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 246 VHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 246 l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
+=-|=..++|...+.+.|+..+++++.
T Consensus 187 VDAGiG~pSdAa~aMElG~DaVL~NTA 213 (262)
T COG2022 187 VDAGIGTPSDAAQAMELGADAVLLNTA 213 (262)
T ss_pred EeCCCCChhHHHHHHhcccceeehhhH
Confidence 211212389999999999999999875
No 262
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=74.16 E-value=13 Score=26.85 Aligned_cols=32 Identities=9% Similarity=-0.013 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHH
Q 023114 226 PNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGA 259 (287)
Q Consensus 226 P~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a 259 (287)
-|...+..+++.+. ..+.|.||||+..|.+.-
T Consensus 50 ~K~~~i~~i~~~fP--~~kfiLIGDsgq~DpeiY 81 (100)
T PF09949_consen 50 HKRDNIERILRDFP--ERKFILIGDSGQHDPEIY 81 (100)
T ss_pred HHHHHHHHHHHHCC--CCcEEEEeeCCCcCHHHH
Confidence 45566667766654 357999999999997653
No 263
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=74.13 E-value=37 Score=28.98 Aligned_cols=96 Identities=24% Similarity=0.243 Sum_probs=55.1
Q ss_pred CCccHHHHHHHHHHcCCeEE-EEeCCCc-c-hHHHHHhcCCcCccceEEecccCCCCC----CCHHHHHHHHHHcCCCCC
Q 023114 171 CDPEAEKVFKAIRKAGVKLA-VVSNFDT-R-LRPVLRALNCDHWFDAVAVSAEVEAEK----PNPTIFLKACDLLGVKPE 243 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~-ivSn~~~-~-~~~~l~~~gl~~~f~~~~~~~~~~~~K----P~~~~~~~~~~~l~~~p~ 243 (287)
+.+...++++.++++|...+ +++-.+. + +..+.+.. +-|-.+++....+-.+ |...-+..-++++- +
T Consensus 125 p~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~---~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~---~ 198 (256)
T TIGR00262 125 PLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKS---QGFVYLVSRAGVTGARNRAASALNELVKRLKAYS---A 198 (256)
T ss_pred ChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhC---CCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc---C
Confidence 34678889999999998866 4553332 2 45555543 3244555544332221 22222233333321 1
Q ss_pred CEEEEcCC--chhhHHHHHHcCceEEEECCC
Q 023114 244 DAVHVGDD--RRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 244 ~~l~VGDs--~~~Di~~a~~aG~~~i~v~~~ 272 (287)
..+.||=. ...++..+..+|...+.+++.
T Consensus 199 ~pi~vgfGI~~~e~~~~~~~~GADgvVvGSa 229 (256)
T TIGR00262 199 KPVLVGFGISKPEQVKQAIDAGADGVIVGSA 229 (256)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 23667652 145888899999999999985
No 264
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=73.40 E-value=57 Score=27.77 Aligned_cols=109 Identities=14% Similarity=0.179 Sum_probs=69.1
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcchHHHHH-hcCCcCccceEEecccCCCCCC-----------CHHHHHHHHHHcC
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLR-ALNCDHWFDAVAVSAEVEAEKP-----------NPTIFLKACDLLG 239 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~-~~gl~~~f~~~~~~~~~~~~KP-----------~~~~~~~~~~~l~ 239 (287)
..+..+..+.+.+.+.+-+++|-+.+.+..+.. ...-...|--++-..+...+-| +.+.=..++++++
T Consensus 115 v~~~~eA~~~l~~~~~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPfs~e~n~al~~~~~ 194 (249)
T PF02571_consen 115 VDSYEEAAELLKELGGGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPESALGFPPKNIIAMQGPFSKELNRALFRQYG 194 (249)
T ss_pred eCCHHHHHHHHhhcCCCCEEEeCchhhHHHHhhcccCCCEEEEEECCCccccCCCChhhEEEEeCCCCHHHHHHHHHHcC
Confidence 467888888888777667777777777655544 2222233333433333332211 2233356678888
Q ss_pred CCCCCEEEEcCCch----hhHHHHHHcCceEEEECCC--------CCCHHHHHHHh
Q 023114 240 VKPEDAVHVGDDRR----NDVWGARDAGCDAWLWGSD--------VHSFKEVAQRI 283 (287)
Q Consensus 240 ~~p~~~l~VGDs~~----~Di~~a~~aG~~~i~v~~~--------~~~~~el~~~l 283 (287)
++ +++-=||+. .=+.+|++.|++.|++.++ .++++|+.+++
T Consensus 195 i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~e~l~~l 247 (249)
T PF02571_consen 195 ID---VLVTKESGGSGFDEKIEAARELGIPVIVIKRPPEPYGDPVVETIEELLDWL 247 (249)
T ss_pred CC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCHHHHHHHH
Confidence 63 666666533 4588999999999999886 36777777765
No 265
>PLN02334 ribulose-phosphate 3-epimerase
Probab=73.37 E-value=53 Score=27.38 Aligned_cols=99 Identities=21% Similarity=0.184 Sum_probs=54.4
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcch---HHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCC-CCCCEEEE
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTRL---RPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGV-KPEDAVHV 248 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~~---~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~-~p~~~l~V 248 (287)
....+.++.+++.|.++++..|..... ...+...| -+++-..-........+..+..+..+-+-... ..-.++++
T Consensus 102 d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~-~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~ 180 (229)
T PLN02334 102 IHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGL-VDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVD 180 (229)
T ss_pred hhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccC-CCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEe
Confidence 345688888999999999988743332 33332211 23322111111111222334444443322111 11246666
Q ss_pred cCCchhhHHHHHHcCceEEEECCC
Q 023114 249 GDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
|-=...++....++|...+.+++.
T Consensus 181 GGI~~e~i~~l~~aGad~vvvgsa 204 (229)
T PLN02334 181 GGVGPSTIDKAAEAGANVIVAGSA 204 (229)
T ss_pred CCCCHHHHHHHHHcCCCEEEEChH
Confidence 433488999999999999998876
No 266
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=72.44 E-value=35 Score=28.74 Aligned_cols=79 Identities=14% Similarity=0.230 Sum_probs=46.9
Q ss_pred HHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCC-chhhHHHHHH---cCceEEEECCC---
Q 023114 200 RPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDD-RRNDVWGARD---AGCDAWLWGSD--- 272 (287)
Q Consensus 200 ~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs-~~~Di~~a~~---aG~~~i~v~~~--- 272 (287)
...++..|+....=.-...+. ...-|+-+.+..+.+..++ .+++-||- ...|+..+.. .|+..+++++.
T Consensus 152 ~~~l~~~G~~~iiv~~~~~~g-~~~G~d~~~i~~i~~~~~i---pviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~ 227 (241)
T PRK14024 152 LERLDSAGCSRYVVTDVTKDG-TLTGPNLELLREVCARTDA---PVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYA 227 (241)
T ss_pred HHHHHhcCCCEEEEEeecCCC-CccCCCHHHHHHHHhhCCC---CEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHc
Confidence 444556665433222222222 2344788888888887665 37887751 1456666543 49999999874
Q ss_pred -CCCHHHHHHH
Q 023114 273 -VHSFKEVAQR 282 (287)
Q Consensus 273 -~~~~~el~~~ 282 (287)
.-+++++.+.
T Consensus 228 g~~~~~~~~~~ 238 (241)
T PRK14024 228 GAFTLPEALAV 238 (241)
T ss_pred CCCCHHHHHHH
Confidence 5666665543
No 267
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=71.94 E-value=2.6 Score=33.27 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.6
Q ss_pred eEEEEeCCCCccCCCc
Q 023114 75 KALLVDAAGTLLVPSQ 90 (287)
Q Consensus 75 k~vifD~DGTLid~~~ 90 (287)
+.+++|+|+||+.++.
T Consensus 2 ~~lvlDLDeTLi~~~~ 17 (162)
T TIGR02251 2 KTLVLDLDETLVHSTF 17 (162)
T ss_pred cEEEEcCCCCcCCCCC
Confidence 5799999999998754
No 268
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=71.23 E-value=9.8 Score=30.38 Aligned_cols=88 Identities=24% Similarity=0.208 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCcc--hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHc---CCCCCCEEEE
Q 023114 174 EAEKVFKAIRKAGVKLAVVSNFDTR--LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLL---GVKPEDAVHV 248 (287)
Q Consensus 174 g~~~ll~~L~~~g~~i~ivSn~~~~--~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l---~~~p~~~l~V 248 (287)
++...|..++..+-++++++..+.. +..+-+.+|+. +...... +++-+...++++ |+ -++|
T Consensus 65 Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~--i~~~~~~--------~~~e~~~~i~~~~~~G~----~viV 130 (176)
T PF06506_consen 65 DILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVD--IKIYPYD--------SEEEIEAAIKQAKAEGV----DVIV 130 (176)
T ss_dssp HHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-E--EEEEEES--------SHHHHHHHHHHHHHTT------EEE
T ss_pred HHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCc--eEEEEEC--------CHHHHHHHHHHHHHcCC----cEEE
Confidence 4444555555567899999965433 56666666763 2322222 133444444443 54 3789
Q ss_pred cCCchhhHHHHHHcCceEEEECCCCCCHH
Q 023114 249 GDDRRNDVWGARDAGCDAWLWGSDVHSFK 277 (287)
Q Consensus 249 GDs~~~Di~~a~~aG~~~i~v~~~~~~~~ 277 (287)
|+. . -...|+..|++++++.++..+..
T Consensus 131 Gg~-~-~~~~A~~~gl~~v~i~sg~esi~ 157 (176)
T PF06506_consen 131 GGG-V-VCRLARKLGLPGVLIESGEESIR 157 (176)
T ss_dssp ESH-H-HHHHHHHTTSEEEESS--HHHHH
T ss_pred CCH-H-HHHHHHHcCCcEEEEEecHHHHH
Confidence 985 4 37889999999999988644443
No 269
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=70.52 E-value=35 Score=31.22 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=46.4
Q ss_pred EEEeCCCcchHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCC-chhhHHHHHHcCceEEE
Q 023114 190 AVVSNFDTRLRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDD-RRNDVWGARDAGCDAWL 268 (287)
Q Consensus 190 ~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs-~~~Di~~a~~aG~~~i~ 268 (287)
++=+|....+...+...|+. ||+.-..| ...+.+.|++|+++++-|-. ...+++.|.+.|+..+-
T Consensus 42 AvKaN~~~~il~~l~~~G~g--~DvaS~gE------------l~~al~~G~~~~~Iif~gp~K~~~~l~~a~~~Gv~~i~ 107 (394)
T cd06831 42 TVRCNSTPAVLEILAALGTG--FACSSKNE------------MALVQELGVSPENIIYTNPCKQASQIKYAAKVGVNIMT 107 (394)
T ss_pred eeccCCCHHHHHHHHHcCCC--eEeCCHHH------------HHHHHhcCCCcCCEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence 44456655577777777753 45442222 33344578888888886651 26788888888877665
Q ss_pred ECCCCCCHHHHHHH
Q 023114 269 WGSDVHSFKEVAQR 282 (287)
Q Consensus 269 v~~~~~~~~el~~~ 282 (287)
.+|.+|+..+
T Consensus 108 ----vDS~~El~~i 117 (394)
T cd06831 108 ----CDNEIELKKI 117 (394)
T ss_pred ----ECCHHHHHHH
Confidence 3456665544
No 270
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=69.31 E-value=26 Score=36.22 Aligned_cols=63 Identities=21% Similarity=0.206 Sum_probs=43.1
Q ss_pred hHHHHHhcCCcCccceEEecc-----cCCCCCCCHHHHHHHHHHcCCCCCCE-EEEcCCchh-hHHHHHHcCce
Q 023114 199 LRPVLRALNCDHWFDAVAVSA-----EVEAEKPNPTIFLKACDLLGVKPEDA-VHVGDDRRN-DVWGARDAGCD 265 (287)
Q Consensus 199 ~~~~l~~~gl~~~f~~~~~~~-----~~~~~KP~~~~~~~~~~~l~~~p~~~-l~VGDs~~~-Di~~a~~aG~~ 265 (287)
++..|+..|+... .+++.. -+...-.+...+.++..++|++.+++ +|+||| .| |++... -|..
T Consensus 926 lr~~Lr~~gLr~~--~iys~~~~~LDVlP~~ASKgqAlRyL~~rwgi~l~~v~VfaGdS-GntD~e~Ll-~G~~ 995 (1050)
T TIGR02468 926 LRKLLRIQGLRCH--AVYCRNGTRLNVIPLLASRSQALRYLFVRWGIELANMAVFVGES-GDTDYEGLL-GGLH 995 (1050)
T ss_pred HHHHHHhCCCceE--EEeecCCcEeeeeeCCCCHHHHHHHHHHHcCCChHHeEEEeccC-CCCCHHHHh-CCce
Confidence 5666666676532 222221 23456668899999999999999999 559999 77 987663 3444
No 271
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=69.10 E-value=37 Score=28.93 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=57.9
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEEecccCCC-----CC----------CC-HHHHHHHH
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAEVEA-----EK----------PN-PTIFLKAC 235 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~~~-----~K----------P~-~~~~~~~~ 235 (287)
.+++.++.+.+++.| +-+++|-+.+.+..+........++-.++...+... +- |- .+.=...+
T Consensus 114 V~d~~ea~~~~~~~~-~rVflt~G~~~l~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n~all 192 (257)
T COG2099 114 VADIEEAAEAAKQLG-RRVFLTTGRQNLAHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDNKALL 192 (257)
T ss_pred ecCHHHHHHHHhccC-CcEEEecCccchHHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHHHHHH
Confidence 367788888888776 444455554555555555444444444443322211 11 11 12223556
Q ss_pred HHcCCCCCCEEEEcCCchh-----hHHHHHHcCceEEEECCC
Q 023114 236 DLLGVKPEDAVHVGDDRRN-----DVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 236 ~~l~~~p~~~l~VGDs~~~-----Di~~a~~aG~~~i~v~~~ 272 (287)
++++++ +++-=||+.. -+++|.++|+++|++.++
T Consensus 193 ~q~~id---~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 193 EQYRID---VVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HHhCCC---EEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 777763 6777676333 499999999999999887
No 272
>PLN02591 tryptophan synthase
Probab=69.06 E-value=63 Score=27.53 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=54.2
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeC-CCcc--hHHHHHhcCCcCccceEEecccCCCC--C--CCHHHHHHHHHHcCCCCC
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSN-FDTR--LRPVLRALNCDHWFDAVAVSAEVEAE--K--PNPTIFLKACDLLGVKPE 243 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn-~~~~--~~~~l~~~gl~~~f~~~~~~~~~~~~--K--P~~~~~~~~~~~l~~~p~ 243 (287)
++++..++.+.++++|+..+.+-. .+.. +..+.+.. .-|=..++...+.-. + +...-+...+++. .+
T Consensus 116 P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~---~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~---~~ 189 (250)
T PLN02591 116 PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS---EGFVYLVSSTGVTGARASVSGRVESLLQELKEV---TD 189 (250)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC---CCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc---CC
Confidence 346688999999999977666553 3322 45555442 223344443322221 1 2222333334442 23
Q ss_pred CEEEEcC--CchhhHHHHHHcCceEEEECCC
Q 023114 244 DAVHVGD--DRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 244 ~~l~VGD--s~~~Di~~a~~aG~~~i~v~~~ 272 (287)
--++||= +...|+..+...|...+.|++.
T Consensus 190 ~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSa 220 (250)
T PLN02591 190 KPVAVGFGISKPEHAKQIAGWGADGVIVGSA 220 (250)
T ss_pred CceEEeCCCCCHHHHHHHHhcCCCEEEECHH
Confidence 3455554 3345999999999999999985
No 273
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=68.22 E-value=30 Score=29.12 Aligned_cols=29 Identities=7% Similarity=0.046 Sum_probs=25.1
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcch
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTRL 199 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~~ 199 (287)
+.|++.++++.+++.|+++.|-||+.-..
T Consensus 85 l~~~l~~li~~l~~~g~~v~leTNGtl~~ 113 (238)
T TIGR03365 85 LQKPLGELIDLGKAKGYRFALETQGSVWQ 113 (238)
T ss_pred hhHhHHHHHHHHHHCCCCEEEECCCCCcH
Confidence 45788999999999999999999997543
No 274
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=66.80 E-value=15 Score=35.63 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=53.8
Q ss_pred ccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCC-cCcc-ceEEecccCCCCCCCHHHHHHHHHHcCCCCCCE
Q 023114 169 HLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNC-DHWF-DAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDA 245 (287)
Q Consensus 169 ~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl-~~~f-~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~ 245 (287)
..+.|++.+||+.+.+. +.+.|+|=+.+. +..+++.+.- ..+| +.|++.++....|- + =+..+.......
T Consensus 200 vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~~~~kt----~--dL~~~~p~g~sm 272 (635)
T KOG0323|consen 200 VKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDESPFFKT----L--DLVLLFPCGDSM 272 (635)
T ss_pred EEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCCCcccc----c--ccccCCCCCCcc
Confidence 35789999999999988 999999988877 6777776543 2344 66777777444331 1 111122112233
Q ss_pred EEEcCCchhhHHHHHHc
Q 023114 246 VHVGDDRRNDVWGARDA 262 (287)
Q Consensus 246 l~VGDs~~~Di~~a~~a 262 (287)
++|.|+ ..|++.-...
T Consensus 273 vvIIDD-r~dVW~~~~~ 288 (635)
T KOG0323|consen 273 VVIIDD-RSDVWPDHKR 288 (635)
T ss_pred EEEEeC-ccccccCCCc
Confidence 555555 6777655543
No 275
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=65.87 E-value=4.2 Score=31.92 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=14.4
Q ss_pred eEEEEeCCCCccCCCcc
Q 023114 75 KALLVDAAGTLLVPSQP 91 (287)
Q Consensus 75 k~vifD~DGTLid~~~~ 91 (287)
..+++|+|.||+++...
T Consensus 7 l~LVLDLDeTLihs~~~ 23 (156)
T TIGR02250 7 LHLVLDLDQTLIHTTKD 23 (156)
T ss_pred eEEEEeCCCCccccccc
Confidence 67999999999987653
No 276
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=65.29 E-value=11 Score=30.51 Aligned_cols=35 Identities=29% Similarity=0.567 Sum_probs=29.4
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhc
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRAL 206 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~ 206 (287)
.|.+.+.|++|+++|.+++++|+.+.. +..+++.+
T Consensus 19 ~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 19 SPETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 477889999999999999999998877 67777663
No 277
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=65.00 E-value=6 Score=33.13 Aligned_cols=47 Identities=21% Similarity=0.129 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHcCCC---CCCEEEEcCCchhhHHHHHHcCce-----EEEECCC
Q 023114 225 KPNPTIFLKACDLLGVK---PEDAVHVGDDRRNDVWGARDAGCD-----AWLWGSD 272 (287)
Q Consensus 225 KP~~~~~~~~~~~l~~~---p~~~l~VGDs~~~Di~~a~~aG~~-----~i~v~~~ 272 (287)
..|..+...++++++.. +.-++++||+ ..|-.+-+.+.-. ++.|++.
T Consensus 164 ~~KG~av~~ll~~~~~~~~~~~~~l~~GDD-~tDE~~f~~~~~~~~~~~~i~V~~~ 218 (235)
T PF02358_consen 164 VNKGSAVRRLLEELPFAGPKPDFVLYIGDD-RTDEDAFRALRELEEGGFGIKVGSV 218 (235)
T ss_dssp --HHHHHHHHHTTS---------EEEEESS-HHHHHHHHTTTTS----EEEEES--
T ss_pred CChHHHHHHHHHhcCccccccceeEEecCC-CCCHHHHHHHHhcccCCCCeEEEee
Confidence 33678899999998865 7789999998 9999988876553 5777664
No 278
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=64.39 E-value=35 Score=32.57 Aligned_cols=87 Identities=21% Similarity=0.174 Sum_probs=53.7
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc--hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcC
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR--LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGD 250 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~--~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGD 250 (287)
-|+...|...++.+-+++|++-.... +..+-+.++++ ++.+...... +......-+++-|+ -++|||
T Consensus 84 ~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~--i~~~~~~~~~-----e~~~~~~~l~~~G~----~~viG~ 152 (526)
T TIGR02329 84 FDVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLD--IVQRSYVTEE-----DARSCVNDLRARGI----GAVVGA 152 (526)
T ss_pred hhHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc--eEEEEecCHH-----HHHHHHHHHHHCCC----CEEECC
Confidence 35666777777777899999865433 55555666665 3333222110 11222333444566 378999
Q ss_pred CchhhHHHHHHcCceEEEECCC
Q 023114 251 DRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 251 s~~~Di~~a~~aG~~~i~v~~~ 272 (287)
. .. ...|+.+|+++|++.++
T Consensus 153 ~-~~-~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 153 G-LI-TDLAEQAGLHGVFLYSA 172 (526)
T ss_pred h-HH-HHHHHHcCCceEEEecH
Confidence 5 33 67799999999998775
No 279
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=64.35 E-value=14 Score=32.80 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=25.7
Q ss_pred ccCCccHHHHHHHHHHcCCeEEEEeCCCc
Q 023114 169 HLCDPEAEKVFKAIRKAGVKLAVVSNFDT 197 (287)
Q Consensus 169 ~~~~pg~~~ll~~L~~~g~~i~ivSn~~~ 197 (287)
+.++|.+.++++.+++.|+.+.|.||+..
T Consensus 141 PlL~p~l~eli~~~k~~Gi~~~L~TNG~~ 169 (322)
T PRK13762 141 PTLYPYLPELIEEFHKRGFTTFLVTNGTR 169 (322)
T ss_pred ccchhhHHHHHHHHHHcCCCEEEECCCCC
Confidence 34678999999999999999999999964
No 280
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=64.07 E-value=29 Score=35.28 Aligned_cols=112 Identities=11% Similarity=0.012 Sum_probs=59.1
Q ss_pred CCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccCCCcccccccCCh-hHHHHHHhccCCCCchHHHHHHHHHHhhc-
Q 023114 88 PSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDGR-PFWQFIVSSSTGCSDSQYFEELYNYYTTE- 165 (287)
Q Consensus 88 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 165 (287)
..+..+|.+.+++..--++.+.++.++.|....-.. .......-.. .|++...- ..+..|--. ++...
T Consensus 631 ftKGaPE~I~~ic~p~tvP~dy~evl~~Yt~~GfRV---IAlA~K~L~~~~~~~~~~~------~Rd~vEs~l-~FlGLi 700 (1140)
T KOG0208|consen 631 FTKGAPESIAEICKPETVPADYQEVLKEYTHQGFRV---IALASKELETSTLQKAQKL------SRDTVESNL-EFLGLI 700 (1140)
T ss_pred eccCCHHHHHHhcCcccCCccHHHHHHHHHhCCeEE---EEEecCccCcchHHHHhhc------cHhhhhccc-eeeEEE
Confidence 345568899998888888888888877775311100 0000011111 11111100 011111000 11111
Q ss_pred cccccCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCc
Q 023114 166 KAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCD 209 (287)
Q Consensus 166 ~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~ 209 (287)
....++.+..+..+++|.+.+++.+.||+.+-. ...+.+..|+-
T Consensus 701 VmeNkLK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVakeCgmi 745 (1140)
T KOG0208|consen 701 VMENKLKEETKRVIDELNRANIRTVMCTGDNLLTAISVAKECGMI 745 (1140)
T ss_pred EeecccccccHHHHHHHHhhcceEEEEcCCchheeeehhhccccc
Confidence 112346789999999999999999999987643 34445555553
No 281
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=63.85 E-value=37 Score=28.15 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCcc-HHHHHHHHHHcCCeEEEEeCCCcc
Q 023114 171 CDPE-AEKVFKAIRKAGVKLAVVSNFDTR 198 (287)
Q Consensus 171 ~~pg-~~~ll~~L~~~g~~i~ivSn~~~~ 198 (287)
+.++ +.++++.+++.|+.+++.||+...
T Consensus 51 lq~~fl~~l~~~~k~~gi~~~leTnG~~~ 79 (213)
T PRK10076 51 MQAEFATRFLQRLRLWGVSCAIETAGDAP 79 (213)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 4566 579999999999999999998654
No 282
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=63.28 E-value=99 Score=26.65 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=62.5
Q ss_pred HHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCC-CCCHHHHHHHHHHcCCCCCCEEEEcCCchhh
Q 023114 178 VFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAE-KPNPTIFLKACDLLGVKPEDAVHVGDDRRND 255 (287)
Q Consensus 178 ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~-KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~D 255 (287)
+.+.|++-...++.....+.. +..++...| ||.++.-.|.+.. -........+++..|+.| .+=|-++....
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~G----fD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~--lVRvp~~~~~~ 82 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAATSG----YDWLLIDGEHAPNTIQDLYHQLQAIAPYASQP--VIRPVEGSKPL 82 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHHcC----CCEEEEccccCCCCHHHHHHHHHHHHhcCCCe--EEECCCCCHHH
Confidence 445555543444443333333 677777777 5666665554432 222222344555556654 55555555888
Q ss_pred HHHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 256 VWGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 256 i~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
+.-+.++|...|+++. +++.+|..+.+
T Consensus 83 i~r~LD~GA~GIivP~-V~saeeA~~~V 109 (267)
T PRK10128 83 IKQVLDIGAQTLLIPM-VDTAEQARQVV 109 (267)
T ss_pred HHHHhCCCCCeeEecC-cCCHHHHHHHH
Confidence 9999999999999998 99999988775
No 283
>PRK08005 epimerase; Validated
Probab=63.09 E-value=87 Score=25.93 Aligned_cols=99 Identities=13% Similarity=0.053 Sum_probs=56.6
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCc
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDR 252 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~ 252 (287)
+...++++.+|+.|.+.+|.=|-.+.+..+...+..-+++-.+......+-.|=-+..+.++.+--..-++.-+-|.- +
T Consensus 93 ~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDG-G 171 (210)
T PRK08005 93 QNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADG-G 171 (210)
T ss_pred cCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEEC-C
Confidence 457789999999999999998876664433333322222222222222222333555666655432222221255544 2
Q ss_pred hh--hHHHHHHcCceEEEECCC
Q 023114 253 RN--DVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 253 ~~--Di~~a~~aG~~~i~v~~~ 272 (287)
.| .+....++|...+..|+.
T Consensus 172 I~~~~i~~l~~aGad~~V~Gsa 193 (210)
T PRK08005 172 ITLRAARLLAAAGAQHLVIGRA 193 (210)
T ss_pred CCHHHHHHHHHCCCCEEEEChH
Confidence 44 466678899998877765
No 284
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=61.57 E-value=36 Score=27.01 Aligned_cols=15 Identities=7% Similarity=0.124 Sum_probs=7.1
Q ss_pred CCCCCHHHHHHHHHH
Q 023114 223 AEKPNPTIFLKACDL 237 (287)
Q Consensus 223 ~~KP~~~~~~~~~~~ 237 (287)
.+.|+-+.+..-.+.
T Consensus 109 lG~PkQE~~~~~~~~ 123 (172)
T PF03808_consen 109 LGAPKQERWIARHRQ 123 (172)
T ss_pred CCCCHHHHHHHHHHH
Confidence 345555555444433
No 285
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=60.77 E-value=99 Score=25.87 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=35.1
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEcC-CchhhHHHHHHcCceEEEECCC
Q 023114 222 EAEKPNPTIFLKACDLLGVKPEDAVHVGD-DRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 222 ~~~KP~~~~~~~~~~~l~~~p~~~l~VGD-s~~~Di~~a~~aG~~~i~v~~~ 272 (287)
...-|+.+.+..+++..+++ +++-|- +...|+..+..+|+..+.+++-
T Consensus 172 ~~~g~~~~~~~~i~~~~~ip---vi~~GGi~s~edi~~l~~~G~~~vivGsa 220 (233)
T cd04723 172 SGQGPDLELLERLAARADIP---VIAAGGVRSVEDLELLKKLGASGALVASA 220 (233)
T ss_pred cCCCcCHHHHHHHHHhcCCC---EEEeCCCCCHHHHHHHHHcCCCEEEEehH
Confidence 34557888899998876543 455552 1268999999999999998863
No 286
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=59.95 E-value=11 Score=31.78 Aligned_cols=45 Identities=33% Similarity=0.709 Sum_probs=37.2
Q ss_pred CCCCH----HHHHHHHHHcCCCC--CCEEEEcCCchhhHHHHHHcCceEEE
Q 023114 224 EKPNP----TIFLKACDLLGVKP--EDAVHVGDDRRNDVWGARDAGCDAWL 268 (287)
Q Consensus 224 ~KP~~----~~~~~~~~~l~~~p--~~~l~VGDs~~~Di~~a~~aG~~~i~ 268 (287)
-||.| +.|+.-++.+|++| .++-||+|+..+-..+|--.|+-+++
T Consensus 80 iKPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWEVWl 130 (279)
T cd00733 80 IKPSPDNIQELYLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWEVWL 130 (279)
T ss_pred ECCCCccHHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEE
Confidence 35555 45777889999877 48999999999999999999998765
No 287
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=59.59 E-value=17 Score=30.71 Aligned_cols=38 Identities=5% Similarity=-0.011 Sum_probs=31.4
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcC
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDH 210 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~ 210 (287)
|.+.++++.++++|++++++|+.+.. +..+++.+++..
T Consensus 24 ~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~ 62 (249)
T TIGR01485 24 LRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLT 62 (249)
T ss_pred HHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCC
Confidence 67778888999999999999998876 788877777643
No 288
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=59.54 E-value=17 Score=24.36 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceE
Q 023114 222 EAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDA 266 (287)
Q Consensus 222 ~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~ 266 (287)
....|-...+..+++++.+++..+..|-++ .-+|..++.||--.
T Consensus 23 pE~aPftAvlkfaAEeFkv~~~TsAiiTnd-GvGINP~qtAGnvf 66 (82)
T cd01766 23 PESTPFTAVLKFAAEEFKVPAATSAIITND-GIGINPAQTAGNVF 66 (82)
T ss_pred cccCchHHHHHHHHHhcCCCccceeEEecC-ccccChhhccccee
Confidence 345678889999999999999999999987 89999999999443
No 289
>PRK04302 triosephosphate isomerase; Provisional
Probab=59.35 E-value=60 Score=26.95 Aligned_cols=97 Identities=26% Similarity=0.291 Sum_probs=57.1
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEEecc--cCCC----CCCCHHHHHHHHHHcCC-CCC
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSA--EVEA----EKPNPTIFLKACDLLGV-KPE 243 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~--~~~~----~KP~~~~~~~~~~~l~~-~p~ 243 (287)
++.++.++++..++.|..+.++++....+.. +...+. +.+.... -.+. ..+.|+.....++.+.- ..+
T Consensus 99 ~~~e~~~~v~~a~~~Gl~~I~~v~~~~~~~~-~~~~~~----~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~ 173 (223)
T PRK04302 99 TLADIEAVVERAKKLGLESVVCVNNPETSAA-AAALGP----DYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPD 173 (223)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEcCCHHHHHH-HhcCCC----CEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCC
Confidence 3456788999999999999988887444443 333331 2222111 1121 22456666655444431 223
Q ss_pred CEEEEcCC--chhhHHHHHHcCceEEEECCC
Q 023114 244 DAVHVGDD--RRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 244 ~~l~VGDs--~~~Di~~a~~aG~~~i~v~~~ 272 (287)
-.+++|=+ ..+++..+...|+..+++++.
T Consensus 174 ~pvi~GggI~~~e~~~~~~~~gadGvlVGsa 204 (223)
T PRK04302 174 VKVLCGAGISTGEDVKAALELGADGVLLASG 204 (223)
T ss_pred CEEEEECCCCCHHHHHHHHcCCCCEEEEehH
Confidence 34555542 257788888899999999986
No 290
>PF04358 DsrC: DsrC like protein; InterPro: IPR007453 DsrC (P45573 from SWISSPROT) has been observed to co-purify with Desulphovibrio vulgaris dissimilatory sulphite reductase []. However, DsrC appears to be only loosely associated to the sulphite reductase, which suggests that it may not be an integral part of the dissimilatory sulphite reductase. Many proteins in this entry are found in organisms such as Escherichia coli and Haemophilus influenzae which do not contain dissimilatory sulphite reductases but can synthesise assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins []. The strictly conserved cysteine in the C terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds []. Also included in this entry is TusE, a partner to TusBCD in a sulphur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Many proteins in this entry are annotated as the third (gamma) subunit of dissimilatory sulphite reductase ; PDB: 2V4J_F 2A5W_C 1SAU_A 1JI8_A 1YX3_A.
Probab=58.69 E-value=67 Score=23.54 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=25.2
Q ss_pred eEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHH
Q 023114 75 KALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAE 111 (287)
Q Consensus 75 k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~ 111 (287)
+.|-+|=||=|+|.+.-..+....++++.|+..+.+.
T Consensus 7 ~~i~~D~eGfL~~~~dW~eevA~~lA~~egI~Ltd~H 43 (109)
T PF04358_consen 7 KTIETDEEGFLVDPEDWNEEVAEALAKEEGIELTDEH 43 (109)
T ss_dssp EEEEEETTSEESSGGG--HHHHHHHHHCTT-S--HHH
T ss_pred EEeeeCCCcCcCChHhCCHHHHHHHHHHcCCCCCHHH
Confidence 6789999999999766666777777777788766544
No 291
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=58.04 E-value=9.8 Score=32.20 Aligned_cols=45 Identities=33% Similarity=0.666 Sum_probs=37.2
Q ss_pred CCCCH----HHHHHHHHHcCCCCC--CEEEEcCCchhhHHHHHHcCceEEE
Q 023114 224 EKPNP----TIFLKACDLLGVKPE--DAVHVGDDRRNDVWGARDAGCDAWL 268 (287)
Q Consensus 224 ~KP~~----~~~~~~~~~l~~~p~--~~l~VGDs~~~Di~~a~~aG~~~i~ 268 (287)
-||.| +.|+.-++.+|++|. ++-||+|+..+--.+|-..|+-+++
T Consensus 84 lKPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVWl 134 (283)
T PRK09348 84 LKPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWEVWL 134 (283)
T ss_pred EcCCCccHHHHHHHHHHHhCCCccccceeEeecCCCCCcccccccceEEEE
Confidence 36655 457777899998774 8999999999999999999998765
No 292
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=57.68 E-value=48 Score=26.85 Aligned_cols=45 Identities=27% Similarity=0.430 Sum_probs=36.9
Q ss_pred CCCCEEEEcCCchhhHHH---HHHcCceEEEECCCCCCHHHHHHHhCcC
Q 023114 241 KPEDAVHVGDDRRNDVWG---ARDAGCDAWLWGSDVHSFKEVAQRIGVK 286 (287)
Q Consensus 241 ~p~~~l~VGDs~~~Di~~---a~~aG~~~i~v~~~~~~~~el~~~l~~~ 286 (287)
.+++++.||-| .-+.-+ |...|+++|+++..+.....+.+.+|.+
T Consensus 57 ~~~~~~liGSS-lGG~~A~~La~~~~~~avLiNPav~p~~~l~~~iG~~ 104 (187)
T PF05728_consen 57 KPENVVLIGSS-LGGFYATYLAERYGLPAVLINPAVRPYELLQDYIGEQ 104 (187)
T ss_pred CCCCeEEEEEC-hHHHHHHHHHHHhCCCEEEEcCCCCHHHHHHHhhCcc
Confidence 44569999998 777765 4556999999999999999999998864
No 293
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=57.41 E-value=47 Score=31.77 Aligned_cols=87 Identities=17% Similarity=0.134 Sum_probs=53.8
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc--hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcC
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR--LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGD 250 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~--~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGD 250 (287)
-|+...|...++.+-+++|++-.... +..+-+.++++ ++.+..... -+......-++..|++ ++|||
T Consensus 94 ~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~--i~~~~~~~~-----~e~~~~v~~lk~~G~~----~vvG~ 162 (538)
T PRK15424 94 FDVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLR--IEQRSYVTE-----EDARGQINELKANGIE----AVVGA 162 (538)
T ss_pred hHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc--eEEEEecCH-----HHHHHHHHHHHHCCCC----EEEcC
Confidence 35666677777777899999965433 55555666664 333222211 1122333444455663 78999
Q ss_pred CchhhHHHHHHcCceEEEECCC
Q 023114 251 DRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 251 s~~~Di~~a~~aG~~~i~v~~~ 272 (287)
. .. ...|..+|+.++++-++
T Consensus 163 ~-~~-~~~A~~~g~~g~~~~s~ 182 (538)
T PRK15424 163 G-LI-TDLAEEAGMTGIFIYSA 182 (538)
T ss_pred c-hH-HHHHHHhCCceEEecCH
Confidence 5 44 67799999999997653
No 294
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=57.10 E-value=14 Score=31.51 Aligned_cols=45 Identities=36% Similarity=0.701 Sum_probs=37.1
Q ss_pred CCCCH----HHHHHHHHHcCCCC--CCEEEEcCCchhhHHHHHHcCceEEE
Q 023114 224 EKPNP----TIFLKACDLLGVKP--EDAVHVGDDRRNDVWGARDAGCDAWL 268 (287)
Q Consensus 224 ~KP~~----~~~~~~~~~l~~~p--~~~l~VGDs~~~Di~~a~~aG~~~i~ 268 (287)
-||.| +.|+.-++.+|++| .++-||+|+..+--.+|--.|+-+++
T Consensus 81 lKPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVWl 131 (293)
T TIGR00388 81 IKPSPDNIQELYLDSLRALGIDPTEHDIRFVEDNWENPTLGAWGLGWEVWL 131 (293)
T ss_pred ECCCCccHHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEE
Confidence 36655 45777788999877 48999999999999999999998775
No 295
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=56.85 E-value=1.2e+02 Score=25.71 Aligned_cols=97 Identities=15% Similarity=0.104 Sum_probs=62.7
Q ss_pred HHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHH---HHcCCCCCCEEEEcCCch
Q 023114 178 VFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKAC---DLLGVKPEDAVHVGDDRR 253 (287)
Q Consensus 178 ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~---~~l~~~p~~~l~VGDs~~ 253 (287)
+.+.|++....++.....+.. +-.++...| ||.++.-.|.+.. +.+.+..++ +..|+.| .+=|-+...
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~G----~D~v~iD~EHg~~--~~~~~~~~~~a~~~~g~~~--~VRvp~~~~ 74 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGLAG----FDWLLLDGEHAPN--DVLTFIPQLMALKGSASAP--VVRPPWNEP 74 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhcC----CCEEEEecccCCC--CHHHHHHHHHHHhhcCCCc--EEECCCCCH
Confidence 344555544445554444444 677777777 5666665554432 344444444 4445544 455544448
Q ss_pred hhHHHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 254 NDVWGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 254 ~Di~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
..+.-+.++|...|+++. +++.+|..+.+
T Consensus 75 ~~i~r~LD~Ga~gIivP~-v~taeea~~~v 103 (249)
T TIGR03239 75 VIIKRLLDIGFYNFLIPF-VESAEEAERAV 103 (249)
T ss_pred HHHHHHhcCCCCEEEecC-cCCHHHHHHHH
Confidence 889999999999999988 99999988775
No 296
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=56.39 E-value=68 Score=28.43 Aligned_cols=84 Identities=15% Similarity=0.076 Sum_probs=54.4
Q ss_pred CCccHHHHHHHHHHc----CCeEEEEeCCCcc-----hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCC
Q 023114 171 CDPEAEKVFKAIRKA----GVKLAVVSNFDTR-----LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVK 241 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~----g~~i~ivSn~~~~-----~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~ 241 (287)
+.||+.+.+..|.++ .++.+++||+-.. ...+=..+|++-.-|.++-+. ..|....+ ..
T Consensus 52 ~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviqSH---------sP~r~l~~---~~ 119 (389)
T KOG1618|consen 52 PIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQSH---------SPFRLLVE---YH 119 (389)
T ss_pred CCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHhhc---------ChHHHHhh---hh
Confidence 569999999999888 7999999996433 334444556542223333221 13444442 23
Q ss_pred CCCEEEEcCCchhhHHHHHHcCceEEE
Q 023114 242 PEDAVHVGDDRRNDVWGARDAGCDAWL 268 (287)
Q Consensus 242 p~~~l~VGDs~~~Di~~a~~aG~~~i~ 268 (287)
-+.++++|+ .+=.+-|+..|++.+.
T Consensus 120 ~k~vLv~G~--~~vr~vAegyGFk~Vv 144 (389)
T KOG1618|consen 120 YKRVLVVGQ--GSVREVAEGYGFKNVV 144 (389)
T ss_pred hceEEEecC--CcHHHHhhccCcccee
Confidence 467999997 4556778999988765
No 297
>PF04763 DUF562: Protein of unknown function (DUF562); InterPro: IPR006850 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=56.38 E-value=88 Score=23.89 Aligned_cols=93 Identities=13% Similarity=0.186 Sum_probs=59.2
Q ss_pred ccHHHHHHHHHHcCC-eEEEEeCCC--cc--hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEE
Q 023114 173 PEAEKVFKAIRKAGV-KLAVVSNFD--TR--LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVH 247 (287)
Q Consensus 173 pg~~~ll~~L~~~g~-~i~ivSn~~--~~--~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~ 247 (287)
+-+--++..|...|| .+-|+|-.. .. .+.+|..--=...|..+++-+..+ -++-..++.+. +-++
T Consensus 35 ~s~~~l~~eL~~~GYSylNIfs~~~~~~~V~eR~~l~~~~~grsFTvI~~elp~g--~~DiR~LqLAS--------eril 104 (146)
T PF04763_consen 35 ESVSLLIEELEESGYSYLNIFSCSSESMCVKERQILNDDSQGRSFTVILTELPEG--SADIRCLQLAS--------ERIL 104 (146)
T ss_pred HHHHHHHHHHhhcCCceEEEEEEcCCCcchHHHHHhcCCccCceEEEEEEcCCCC--ccchhhhhhhh--------ccce
Confidence 446678888988886 344555322 22 255555543456688887765444 44433343333 4478
Q ss_pred EcCCchhhHHHHHHcCceEEEECCCCCCHH
Q 023114 248 VGDDRRNDVWGARDAGCDAWLWGSDVHSFK 277 (287)
Q Consensus 248 VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~ 277 (287)
|++ .-|..-|-+.||.++.+.++..+|.
T Consensus 105 vs~--~~~aaDa~ASgCkvl~~e~~~~~w~ 132 (146)
T PF04763_consen 105 VSR--ECDAADAYASGCKVLQFEDEHNPWA 132 (146)
T ss_pred ecc--cccHHHHHhcCceEEEecCcCCHHH
Confidence 887 5778888999999999998766554
No 298
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=56.32 E-value=1.2e+02 Score=25.78 Aligned_cols=107 Identities=12% Similarity=0.068 Sum_probs=58.9
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEEecccCCCC----------CC-CHHHHHHHHHHcCC
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAEVEAE----------KP-NPTIFLKACDLLGV 240 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~~~~----------KP-~~~~~~~~~~~l~~ 240 (287)
.+...++.+.+.+. +-+++|-+.+.+..+.....-...|--++-..+...+ -| +.+.=..+++++++
T Consensus 114 v~s~~~a~~~l~~~--~~vllttGsk~l~~f~~~~~~~r~~~RvLP~~~s~~g~~~~~iiam~gPfs~e~n~aL~~~~~i 191 (248)
T PRK08057 114 VDDIEEAAEALAPF--RRVLLTTGRQPLAHFAAILPEHRLLVRVLPPPEVLLGLPRAEIIALRGPFSLELERALLRQHRI 191 (248)
T ss_pred ECCHHHHHHHhhcc--CCEEEecCcchHHHHhhcCCCCEEEEEECCCchhcCCCChhhEEEeeCCCCHHHHHHHHHHcCC
Confidence 35666777777555 3445555555543333211111222222222211111 11 22333566788887
Q ss_pred CCCCEEEEcCCch----hhHHHHHHcCceEEEECCCC--------CCHHHHHHHh
Q 023114 241 KPEDAVHVGDDRR----NDVWGARDAGCDAWLWGSDV--------HSFKEVAQRI 283 (287)
Q Consensus 241 ~p~~~l~VGDs~~----~Di~~a~~aG~~~i~v~~~~--------~~~~el~~~l 283 (287)
+ +++-=||+. .=+.+|++.|++.|++.++. ++.+|+.+++
T Consensus 192 ~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~e~~~~l 243 (248)
T PRK08057 192 D---VVVTKNSGGAGTEAKLEAARELGIPVVMIARPALPYADREFEDVAELVAWL 243 (248)
T ss_pred C---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCHHHHHHHH
Confidence 3 677766643 45789999999999998762 5667776655
No 299
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=56.31 E-value=18 Score=35.50 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=32.5
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCc
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHW 211 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~ 211 (287)
+...+.|+.|+++|++++++|+.+.. +..+++.+++.++
T Consensus 436 ~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~~~ 475 (694)
T PRK14502 436 STALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGIKDP 475 (694)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCCCe
Confidence 44568899999999999999998877 7888898887543
No 300
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=56.10 E-value=1.4e+02 Score=26.02 Aligned_cols=104 Identities=9% Similarity=0.105 Sum_probs=61.0
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCC-CCC---CHHHHHHHHHHcCCCCCCEEEE-
Q 023114 175 AEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEA-EKP---NPTIFLKACDLLGVKPEDAVHV- 248 (287)
Q Consensus 175 ~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~-~KP---~~~~~~~~~~~l~~~p~~~l~V- 248 (287)
.+++|+..+++||-+.-+.-.+.+ ++.+++...-... ..++....... .-+ -..+...++++..++- +++.
T Consensus 4 ~k~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~s-PvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPV--alHLD 80 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPAFNIHNLETIQAVVETAAEMRS-PVILAGTPGTFKHAGTEYIVALCSAASTTYNMPL--ALHLD 80 (282)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCC-CEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCE--EEECC
Confidence 567888888888887776644444 5555554322111 23333322211 111 1123455666666642 3444
Q ss_pred -cCCchhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 249 -GDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 249 -GDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
|.+ ..++..|-++|+.+||+.....+++|-.++
T Consensus 81 Hg~~-~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~ 114 (282)
T TIGR01858 81 HHES-LDDIRQKVHAGVRSAMIDGSHFPFAQNVKL 114 (282)
T ss_pred CCCC-HHHHHHHHHcCCCEEeecCCCCCHHHHHHH
Confidence 334 567888999999999999987777765443
No 301
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=55.00 E-value=93 Score=27.37 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEE-eccc-CCC--CCCCHHHHHHHHHHcCCCCCCEEEEcCC
Q 023114 176 EKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVA-VSAE-VEA--EKPNPTIFLKACDLLGVKPEDAVHVGDD 251 (287)
Q Consensus 176 ~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~-~~~~-~~~--~KP~~~~~~~~~~~l~~~p~~~l~VGDs 251 (287)
.++++.+++.|.++...... ...-..+...|. |.++ .+.+ .+. ..+....+..+.+..+++ ++.-|+=
T Consensus 99 ~~~i~~lk~~g~~v~~~v~s-~~~a~~a~~~Ga----D~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iP---viaaGGI 170 (307)
T TIGR03151 99 GKYIPRLKENGVKVIPVVAS-VALAKRMEKAGA----DAVIAEGMESGGHIGELTTMALVPQVVDAVSIP---VIAAGGI 170 (307)
T ss_pred HHHHHHHHHcCCEEEEEcCC-HHHHHHHHHcCC----CEEEEECcccCCCCCCCcHHHHHHHHHHHhCCC---EEEECCC
Confidence 36899999999876543322 223345556665 3333 2221 121 223556666777776653 7777752
Q ss_pred -chhhHHHHHHcCceEEEECCC
Q 023114 252 -RRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 252 -~~~Di~~a~~aG~~~i~v~~~ 272 (287)
...|+..+..+|...+++++.
T Consensus 171 ~~~~~~~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 171 ADGRGMAAAFALGAEAVQMGTR 192 (307)
T ss_pred CCHHHHHHHHHcCCCEeecchH
Confidence 036788999999999999874
No 302
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=54.59 E-value=12 Score=31.57 Aligned_cols=54 Identities=35% Similarity=0.620 Sum_probs=40.4
Q ss_pred CCCCHHH----HHHHHHHcCCCCC--CEEEEcCCchhhHHHHHHcCceEEEECCCCCCHH
Q 023114 224 EKPNPTI----FLKACDLLGVKPE--DAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFK 277 (287)
Q Consensus 224 ~KP~~~~----~~~~~~~l~~~p~--~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~ 277 (287)
-||+|+. |+.-++.+|++|. ++-||+|+..|=-.+|-..|+.+++=+=++..+.
T Consensus 85 lKPsP~NiQeLYL~SL~~lGid~~~HDIRFVEDnWE~PTlGawGlGWEVWldGMEvTQFT 144 (298)
T COG0752 85 IKPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWENPTLGAWGLGWEVWLDGMEVTQFT 144 (298)
T ss_pred ecCCCccHHHHHHHHHHHcCCChhhcceeeeccCCCCCcccccccceeEEEcCeeeeeee
Confidence 4777765 5666899999874 8999999988888888888988776444444333
No 303
>PLN02887 hydrolase family protein
Probab=54.47 E-value=19 Score=34.77 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=33.8
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCc
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCD 209 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~ 209 (287)
+-+...+.|+.++++|++++++|+.+.. +...++.+++.
T Consensus 326 Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 326 ISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLA 365 (580)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence 4477889999999999999999999877 78888888874
No 304
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=53.66 E-value=1.4e+02 Score=25.46 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=62.2
Q ss_pred HHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHH---HHHcCCCCCCEEEEcCCch
Q 023114 178 VFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKA---CDLLGVKPEDAVHVGDDRR 253 (287)
Q Consensus 178 ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~---~~~l~~~p~~~l~VGDs~~ 253 (287)
+.+.|++-...++.....+.. +-.++...| ||.++.-.|.+.. +.+.+..+ ++..|+.| .+=|-+...
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G----~D~v~iD~EHg~~--~~~~~~~~i~a~~~~g~~~--lVRvp~~~~ 81 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANPITTEVLGLAG----FDWLVLDGEHAPN--DVSTFIPQLMALKGSASAP--VVRVPTNEP 81 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhcC----CCEEEEccccCCC--CHHHHHHHHHHHhhcCCCc--EEECCCCCH
Confidence 445555544445554444444 677788877 4666665554432 34444444 44455543 444544448
Q ss_pred hhHHHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 254 NDVWGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 254 ~Di~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
..+.-+.++|...|+++. +++.+|..+.+
T Consensus 82 ~~i~r~LD~Ga~giivP~-v~tae~a~~~v 110 (256)
T PRK10558 82 VIIKRLLDIGFYNFLIPF-VETAEEARRAV 110 (256)
T ss_pred HHHHHHhCCCCCeeeecC-cCCHHHHHHHH
Confidence 899999999999999888 99999988765
No 305
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=53.63 E-value=61 Score=27.88 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcch-HHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCC-----------
Q 023114 175 AEKVFKAIRKAGVKLAVVSNFDTRL-RPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKP----------- 242 (287)
Q Consensus 175 ~~~ll~~L~~~g~~i~ivSn~~~~~-~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p----------- 242 (287)
-+.+++.|.++|+.|.++.-.+..= .-..+..++--.--.++..---...+-....+...++++|++.
T Consensus 40 h~~lve~l~~~gv~V~ll~~~~~~Pd~VFt~D~~~v~~~~avl~r~~~p~R~gE~~~~~~~~~~lgi~i~~~~~~~~~eG 119 (267)
T COG1834 40 HEALVEALEKNGVEVHLLPPIEGLPDQVFTRDPGLVTGEGAVLARMGAPERRGEEEAIKETLESLGIPIYPRVEAGVFEG 119 (267)
T ss_pred HHHHHHHHHHCCCEEEEcCcccCCCcceEeccceeEecccEEEeccCChhhccCHHHHHHHHHHcCCcccccccCCCccc
Confidence 3568888899999998887322110 0001111111001122222222335567778888888888751
Q ss_pred --------CCEEEEcCCchhhHHHHHH
Q 023114 243 --------EDAVHVGDDRRNDVWGARD 261 (287)
Q Consensus 243 --------~~~l~VGDs~~~Di~~a~~ 261 (287)
.++++||.|..+|++++..
T Consensus 120 ~GD~l~~~~~~v~iG~s~RTn~egi~~ 146 (267)
T COG1834 120 AGDVLMDGGDTVYIGYSFRTNLEGIEQ 146 (267)
T ss_pred cccEEEeCCcEEEEEeccccchHHHHH
Confidence 3555556665566555543
No 306
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=52.86 E-value=16 Score=30.31 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=31.6
Q ss_pred CCCEEEEcCC---chhhHHHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 242 PEDAVHVGDD---RRNDVWGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 242 p~~~l~VGDs---~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
.++++||||- +.||.+.-...+..++.|.++.++.+.+.+++
T Consensus 175 ~~~I~FfGDkt~pGGNDyei~~~~rt~g~~V~~p~DT~~~l~~l~ 219 (220)
T PF03332_consen 175 FDEIHFFGDKTFPGGNDYEIFEDPRTIGHTVTSPEDTIKQLKELF 219 (220)
T ss_dssp -SEEEEEESS-STTSTTHHHHHSTTSEEEE-SSHHHHHHHHHHHH
T ss_pred cceEEEEehhccCCCCCceeeecCCccEEEeCCHHHHHHHHHHHh
Confidence 4688999983 25899888888888888888777777777664
No 307
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=51.62 E-value=1.6e+02 Score=25.57 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCC-CCCCH---HHHHHHHHHcCCCCCCEEEE
Q 023114 174 EAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEA-EKPNP---TIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 174 g~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~-~KP~~---~~~~~~~~~l~~~p~~~l~V 248 (287)
..+++|+..+++||-+.-+.-.+.+ ++.+++...-.+ -..++....... .-+.. .+...++++..++- +++.
T Consensus 5 ~~~~~l~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~-sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPV--alHL 81 (284)
T PRK12737 5 STKNMLKKAQAEGYAVPAFNIHNLETLQVVVETAAELR-SPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPL--ALHL 81 (284)
T ss_pred cHHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhC-CCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCE--EEEC
Confidence 4678899999988877776654444 555555432211 133333322111 11211 23445666777642 3443
Q ss_pred cCCc--hhhHHHHHHcCceEEEECCCCCCHHHHHH
Q 023114 249 GDDR--RNDVWGARDAGCDAWLWGSDVHSFKEVAQ 281 (287)
Q Consensus 249 GDs~--~~Di~~a~~aG~~~i~v~~~~~~~~el~~ 281 (287)
|++ ..++..|-++|+.+||+.....+++|--.
T Consensus 82 -DH~~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~ 115 (284)
T PRK12737 82 -DHHEDLDDIKKKVRAGIRSVMIDGSHLSFEENIA 115 (284)
T ss_pred -CCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHH
Confidence 442 46788899999999999987666666543
No 308
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=51.48 E-value=8.7 Score=31.08 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCeEEEEeCCCcc--hH------HHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 177 KVFKAIRKAGVKLAVVSNFDTR--LR------PVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 177 ~ll~~L~~~g~~i~ivSn~~~~--~~------~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
.+|..+++.|++++++.+.... .. ...+. +-..||.++.-++ .-..-+.++|++++++.+.
T Consensus 109 nll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~--~l~~f~~i~aqs~---------~da~r~~~lG~~~~~v~v~ 177 (186)
T PF04413_consen 109 NLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRP--LLSRFDRILAQSE---------ADAERFRKLGAPPERVHVT 177 (186)
T ss_dssp HHHHH-----S-EEEEEE--------------HHHHH--HGGG-SEEEESSH---------HHHHHHHTTT-S--SEEE-
T ss_pred HHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHH--HHHhCCEEEECCH---------HHHHHHHHcCCCcceEEEe
Confidence 7889999999999999974332 21 11211 2344788777654 2344578899999999999
Q ss_pred cCCchhhHH
Q 023114 249 GDDRRNDVW 257 (287)
Q Consensus 249 GDs~~~Di~ 257 (287)
|| .--|..
T Consensus 178 Gn-lKfd~~ 185 (186)
T PF04413_consen 178 GN-LKFDQA 185 (186)
T ss_dssp ---GGG---
T ss_pred Cc-chhccc
Confidence 99 577653
No 309
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=51.13 E-value=53 Score=26.06 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=7.9
Q ss_pred CCCCCHHHHHHHHHH
Q 023114 223 AEKPNPTIFLKACDL 237 (287)
Q Consensus 223 ~~KP~~~~~~~~~~~ 237 (287)
.+.|+-+.+..-...
T Consensus 107 lG~PkQE~~~~~~~~ 121 (171)
T cd06533 107 LGAPKQELWIARHKD 121 (171)
T ss_pred CCCCHHHHHHHHHHH
Confidence 455666655544433
No 310
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=51.01 E-value=61 Score=29.14 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=53.9
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEc
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVG 249 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VG 249 (287)
-.||+.-++.++.. .|.|+++|+...- ..++++.+.-..++..-+..+......++- .+=+..+|=++.++|+|.
T Consensus 215 kRPgvD~FL~~~a~-~yEIVi~sse~gmt~~pl~d~lDP~g~IsYkLfr~~t~y~~G~H---vKdls~LNRdl~kVivVd 290 (393)
T KOG2832|consen 215 KRPGVDYFLGHLAK-YYEIVVYSSEQGMTVFPLLDALDPKGYISYKLFRGATKYEEGHH---VKDLSKLNRDLQKVIVVD 290 (393)
T ss_pred cCchHHHHHHhhcc-cceEEEEecCCccchhhhHhhcCCcceEEEEEecCcccccCccc---hhhhhhhccccceeEEEE
Confidence 35999999999984 4999999998877 677888876666666555554322211110 222677788899999997
Q ss_pred CC
Q 023114 250 DD 251 (287)
Q Consensus 250 Ds 251 (287)
=+
T Consensus 291 ~d 292 (393)
T KOG2832|consen 291 FD 292 (393)
T ss_pred cc
Confidence 54
No 311
>PTZ00174 phosphomannomutase; Provisional
Probab=50.88 E-value=23 Score=29.91 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=26.5
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHH
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLR 204 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~ 204 (287)
-|...+.++.++++|++++++|+.+.. +...++
T Consensus 24 s~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 24 TQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 366778899999999999999998766 555554
No 312
>PRK10481 hypothetical protein; Provisional
Probab=50.67 E-value=45 Score=27.94 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=56.2
Q ss_pred ccHHHHHHHHHHcCCeEEE--EeCCCcc--h-HHH-H-HhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCE
Q 023114 173 PEAEKVFKAIRKAGVKLAV--VSNFDTR--L-RPV-L-RALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDA 245 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~i--vSn~~~~--~-~~~-l-~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~ 245 (287)
|.+...++.|.+.|+...+ ||+.+.. . +.. + -..++..++..+..+..++.--|.++......+++....-+.
T Consensus 77 ~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a~r~~l~~P~~~i~~lv~Al~~g~riGVitP~~~qi~~~~~kw~~~G~~v 156 (224)
T PRK10481 77 RDLQSVIEVLDNQGYDVILLLCTGEFPSLTARNAILLEPSRILPPLVAAIVGGHQVGVIVPVEEQLAQQAQKWQVLQKPP 156 (224)
T ss_pred HHHHHHHHHHHhCCCCEEEEEecCCCCCccccCccccCchhhHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHHHhcCCce
Confidence 5566677777777655443 5655322 1 111 1 233444555555555555556666666666665554333333
Q ss_pred EEEcCCc----hhhHH-HHH---HcCceEEEECCCCCC---HHHHHHHhCcC
Q 023114 246 VHVGDDR----RNDVW-GAR---DAGCDAWLWGSDVHS---FKEVAQRIGVK 286 (287)
Q Consensus 246 l~VGDs~----~~Di~-~a~---~aG~~~i~v~~~~~~---~~el~~~l~~~ 286 (287)
.+.+.|. ...+. +++ ..|...|..++-..+ .+++.+.+|+.
T Consensus 157 ~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg~P 208 (224)
T PRK10481 157 VFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALDVP 208 (224)
T ss_pred eEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHCcC
Confidence 3333110 22222 333 356777665553222 44566666654
No 313
>PLN03017 trehalose-phosphatase
Probab=50.63 E-value=63 Score=29.22 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=27.2
Q ss_pred hHHHHHhcCCcCc--cceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcC
Q 023114 199 LRPVLRALNCDHW--FDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGD 250 (287)
Q Consensus 199 ~~~~l~~~gl~~~--f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGD 250 (287)
++.+++.+|+... .-.++.+||.+ +.++|..+-+. + ..-.|.||+
T Consensus 288 v~~LL~~l~~~~~~~~~pvyiGDD~T----DEDaF~~L~~~-~--~G~gI~VG~ 334 (366)
T PLN03017 288 LEFLLESLGFGNTNNVFPVYIGDDRT----DEDAFKMLRDR-G--EGFGILVSK 334 (366)
T ss_pred HHHHHHhcccccCCCceEEEeCCCCc----cHHHHHHHhhc-C--CceEEEECC
Confidence 5778888887532 22466666654 56788766432 2 123578885
No 314
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=48.57 E-value=1.4e+02 Score=28.57 Aligned_cols=95 Identities=20% Similarity=0.149 Sum_probs=52.0
Q ss_pred ccHHH-HHHHHHHcCCeEEEEeCCCcc-----hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHH---HHcCCC-C
Q 023114 173 PEAEK-VFKAIRKAGVKLAVVSNFDTR-----LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKAC---DLLGVK-P 242 (287)
Q Consensus 173 pg~~~-ll~~L~~~g~~i~ivSn~~~~-----~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~---~~l~~~-p 242 (287)
+|+.+ +-+.+++.|.++.++++.... +...++..|+. .++.++...+ ..| ..+....++ .+.+.+ .
T Consensus 195 ~g~l~~l~~~l~~~g~k~~iV~d~~v~~~~~~l~~~L~~~g~~-v~~~v~p~~E--~~k-sl~~v~~~~~~l~~~~~~r~ 270 (542)
T PRK14021 195 EGAMNHLPQVLGPKPVKVALIHTQPVQRHSDRARTLLRQGGYE-VSDIVIPDAE--AGK-TIEVANGIWQRLGNEGFTRS 270 (542)
T ss_pred CChHHHHHHHHHhcCCeEEEEECccHHHHHHHHHHHHHhCCCc-eEEEEeCCCc--ccC-CHHHHHHHHHHHHhcCCCCC
Confidence 45543 334455557788888865422 33445555652 2333322221 112 233344333 334442 3
Q ss_pred CCEEEEcCCchhhHHHHHH----cCceEEEECC
Q 023114 243 EDAVHVGDDRRNDVWGARD----AGCDAWLWGS 271 (287)
Q Consensus 243 ~~~l~VGDs~~~Di~~a~~----aG~~~i~v~~ 271 (287)
+-+|.||-.-..|+..+-+ .|++.|.|++
T Consensus 271 D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 271 DAIVGLGGGAATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCC
Confidence 4456688855899888777 4999999988
No 315
>PRK00208 thiG thiazole synthase; Reviewed
Probab=48.35 E-value=1.2e+02 Score=25.88 Aligned_cols=89 Identities=20% Similarity=0.274 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCeEEEEeCCCcch------HHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHc---CCCCCCEE
Q 023114 176 EKVFKAIRKAGVKLAVVSNFDTRL------RPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLL---GVKPEDAV 246 (287)
Q Consensus 176 ~~ll~~L~~~g~~i~ivSn~~~~~------~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l---~~~p~~~l 246 (287)
..+++.+...++.+.--|++-... -+..+.++-.+|+..-+..|+ ...-|++.....+++.| |+ .++
T Consensus 52 ~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~-~~llpd~~~tv~aa~~L~~~Gf---~vl 127 (250)
T PRK00208 52 DNLLDLLPPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDD-KTLLPDPIETLKAAEILVKEGF---VVL 127 (250)
T ss_pred chHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCC-CCCCcCHHHHHHHHHHHHHCCC---EEE
Confidence 567777777778877777766542 233444555677777777664 34568899999999999 65 467
Q ss_pred -EEcCCchhhHHHHHHcCceEEEE
Q 023114 247 -HVGDDRRNDVWGARDAGCDAWLW 269 (287)
Q Consensus 247 -~VGDs~~~Di~~a~~aG~~~i~v 269 (287)
++-|+ ..-.....++|+..++.
T Consensus 128 pyc~~d-~~~ak~l~~~G~~~vmP 150 (250)
T PRK00208 128 PYCTDD-PVLAKRLEEAGCAAVMP 150 (250)
T ss_pred EEeCCC-HHHHHHHHHcCCCEeCC
Confidence 89998 88889999999998864
No 316
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=47.47 E-value=42 Score=26.84 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=24.3
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR 198 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~ 198 (287)
+.|++.++++.+++.|+.+.+.||+...
T Consensus 75 l~~~l~~li~~~~~~g~~v~i~TNg~~~ 102 (191)
T TIGR02495 75 LQAGLPDFLRKVRELGFEVKLDTNGSNP 102 (191)
T ss_pred CcHhHHHHHHHHHHCCCeEEEEeCCCCH
Confidence 4577889999999999999999999744
No 317
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=47.02 E-value=1.1e+02 Score=27.73 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=27.4
Q ss_pred cCCccHHHHHHHHHHc-CCe-EEEEeCCCcc--hHHHHHhcCCc
Q 023114 170 LCDPEAEKVFKAIRKA-GVK-LAVVSNFDTR--LRPVLRALNCD 209 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~-g~~-i~ivSn~~~~--~~~~l~~~gl~ 209 (287)
.+.|++.++++.+++. |+. +.+.||+... ....+...|++
T Consensus 118 llr~dl~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGld 161 (373)
T PLN02951 118 TLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLT 161 (373)
T ss_pred cchhhHHHHHHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCCC
Confidence 3568889999999886 774 8899998643 22334445653
No 318
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=46.45 E-value=1.6e+02 Score=24.11 Aligned_cols=99 Identities=16% Similarity=0.178 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHcC-CeEEEEeCCCcchHHHHHhcCCcCccceEEec------ccCCCCCCCHHHHHHHHHHcCCCCCCEE
Q 023114 174 EAEKVFKAIRKAG-VKLAVVSNFDTRLRPVLRALNCDHWFDAVAVS------AEVEAEKPNPTIFLKACDLLGVKPEDAV 246 (287)
Q Consensus 174 g~~~ll~~L~~~g-~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~------~~~~~~KP~~~~~~~~~~~l~~~p~~~l 246 (287)
...++++.+++.| ..+.+-....... ..+...|. |.+... .......+..+.+..+.+..++ .++
T Consensus 110 ~~~~~i~~~~~~g~~~iiv~v~t~~ea-~~a~~~G~----d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~i---pvi 181 (219)
T cd04729 110 TLAELIKRIHEEYNCLLMADISTLEEA-LNAAKLGF----DIIGTTLSGYTEETAKTEDPDFELLKELRKALGI---PVI 181 (219)
T ss_pred CHHHHHHHHHHHhCCeEEEECCCHHHH-HHHHHcCC----CEEEccCccccccccCCCCCCHHHHHHHHHhcCC---CEE
Confidence 5778888888887 4443322222223 33444554 322211 1111234555666677666654 366
Q ss_pred EEcCC-chhhHHHHHHcCceEEEECCCCCCHHHHH
Q 023114 247 HVGDD-RRNDVWGARDAGCDAWLWGSDVHSFKEVA 280 (287)
Q Consensus 247 ~VGDs-~~~Di~~a~~aG~~~i~v~~~~~~~~el~ 280 (287)
..|.= ...|+..+.++|+..+++++..-..++..
T Consensus 182 a~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~~~ 216 (219)
T cd04729 182 AEGRINSPEQAAKALELGADAVVVGSAITRPEHIT 216 (219)
T ss_pred EeCCCCCHHHHHHHHHCCCCEEEEchHHhChHhHh
Confidence 66651 15789999999999999998655555443
No 319
>PLN02151 trehalose-phosphatase
Probab=46.43 E-value=62 Score=29.16 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=21.6
Q ss_pred hHHHHHhcCCcCccc--eEEecccCCCCCCCHHHHHHHHH
Q 023114 199 LRPVLRALNCDHWFD--AVAVSAEVEAEKPNPTIFLKACD 236 (287)
Q Consensus 199 ~~~~l~~~gl~~~f~--~~~~~~~~~~~KP~~~~~~~~~~ 236 (287)
+..+++.+++...-+ .++.+||.+ +.++|..+-+
T Consensus 274 v~~Ll~~~~~~~~~~~~pvyiGDD~T----DEDaF~~L~~ 309 (354)
T PLN02151 274 LEFLLESLGYANCTDVFPIYIGDDRT----DEDAFKILRD 309 (354)
T ss_pred HHHHHHhcccccCCCCeEEEEcCCCc----HHHHHHHHhh
Confidence 577888887754322 466777654 5678876544
No 320
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=45.72 E-value=16 Score=23.71 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=15.2
Q ss_pred HHHHHHHcCCCCCCEEEEcCCchhhHHHHH
Q 023114 231 FLKACDLLGVKPEDAVHVGDDRRNDVWGAR 260 (287)
Q Consensus 231 ~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~ 260 (287)
....++++|+ .+++|| ...|+++..
T Consensus 7 VqQLLK~fG~----~IY~gd-r~~DielM~ 31 (62)
T PF06014_consen 7 VQQLLKKFGI----IIYVGD-RLWDIELME 31 (62)
T ss_dssp HHHHHHTTS---------S--HHHHHHHHH
T ss_pred HHHHHHHCCE----EEEeCC-hHHHHHHHH
Confidence 3577888997 799999 699998764
No 321
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=45.54 E-value=1.5e+02 Score=24.36 Aligned_cols=71 Identities=18% Similarity=0.142 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcc--hHHHHHh-cCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCC--CCEEEEc
Q 023114 175 AEKVFKAIRKAGVKLAVVSNFDTR--LRPVLRA-LNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKP--EDAVHVG 249 (287)
Q Consensus 175 ~~~ll~~L~~~g~~i~ivSn~~~~--~~~~l~~-~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p--~~~l~VG 249 (287)
+..+++.|++. |++++++|.-.. =...+.+ .|.. .-.+.++..+ --+..+...+++++.... -+.++|+
T Consensus 30 ie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~~--i~~v~TG~~C---H~da~m~~~ai~~l~~~~~~~Dll~iE 103 (202)
T COG0378 30 IEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGEP--IIGVETGKGC---HLDASMNLEAIEELVLDFPDLDLLFIE 103 (202)
T ss_pred HHHHHHHHHhh-CCeEEEeceeechhhHHHHHhCCCCe--eEEeccCCcc---CCcHHHHHHHHHHHhhcCCcCCEEEEe
Confidence 44677788887 999999996543 2344444 4432 3334444333 245678888888887533 4899999
Q ss_pred CC
Q 023114 250 DD 251 (287)
Q Consensus 250 Ds 251 (287)
.-
T Consensus 104 s~ 105 (202)
T COG0378 104 SV 105 (202)
T ss_pred cC
Confidence 74
No 322
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=45.25 E-value=1.2e+02 Score=22.23 Aligned_cols=37 Identities=27% Similarity=0.251 Sum_probs=27.0
Q ss_pred eEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHH
Q 023114 75 KALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAE 111 (287)
Q Consensus 75 k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~ 111 (287)
+.|-+|=||=|+|.+.-..+....++++-|+..+.+.
T Consensus 7 ~~ie~D~eGfL~~~~dW~e~vA~~lA~~egieLT~~H 43 (109)
T PRK11508 7 KEIETDTEGYLKESSQWSEPLAVVIAENEGISLSPEH 43 (109)
T ss_pred EEeeeCCCCCcCChHHCCHHHHHHHHHHhCCCCCHHH
Confidence 4688899999999666556666667777787666544
No 323
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=45.21 E-value=1.2e+02 Score=26.99 Aligned_cols=97 Identities=15% Similarity=0.138 Sum_probs=52.3
Q ss_pred HHHHHHHHHHc-CCe-EEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHc-CCCCCCEEEEcC
Q 023114 175 AEKVFKAIRKA-GVK-LAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLL-GVKPEDAVHVGD 250 (287)
Q Consensus 175 ~~~ll~~L~~~-g~~-i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l-~~~p~~~l~VGD 250 (287)
...++..|+++ ++. ..++|+.... ...+++.+++...++..+........+--...+..+.+.+ ..+|+=++..||
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~~gd 95 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDIVLVQGD 95 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45677788775 443 4566766545 5777777888633333332211111121122222232222 235666777788
Q ss_pred Cchhh---HHHHHHcCceEEEECCC
Q 023114 251 DRRND---VWGARDAGCDAWLWGSD 272 (287)
Q Consensus 251 s~~~D---i~~a~~aG~~~i~v~~~ 272 (287)
. ..- ..+|...|++.+++..+
T Consensus 96 ~-~~~la~a~aa~~~~ipv~h~~~g 119 (365)
T TIGR00236 96 T-TTTLAGALAAFYLQIPVGHVEAG 119 (365)
T ss_pred c-hHHHHHHHHHHHhCCCEEEEeCC
Confidence 5 543 44667789999887544
No 324
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=45.21 E-value=2e+02 Score=24.70 Aligned_cols=96 Identities=9% Similarity=0.094 Sum_probs=53.1
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc---hHHHHHhcCCcCccceEEecccCCCCC----CCHHHHHHHHHHcCCCCC
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR---LRPVLRALNCDHWFDAVAVSAEVEAEK----PNPTIFLKACDLLGVKPE 243 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~---~~~~l~~~gl~~~f~~~~~~~~~~~~K----P~~~~~~~~~~~l~~~p~ 243 (287)
++++..++++.++++|+..+.+-+-.+. +..+.+.. +-|=.+++...++-.+ ++..-+...+++. . +
T Consensus 129 P~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a---~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~-t--~ 202 (263)
T CHL00200 129 PYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAA---PGCIYLVSTTGVTGLKTELDKKLKKLIETIKKM-T--N 202 (263)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC---CCcEEEEcCCCCCCCCccccHHHHHHHHHHHHh-c--C
Confidence 4577889999999999776665543332 45555543 2233333333222221 2222333334442 2 2
Q ss_pred CEEEEcC--CchhhHHHHHHcCceEEEECCC
Q 023114 244 DAVHVGD--DRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 244 ~~l~VGD--s~~~Di~~a~~aG~~~i~v~~~ 272 (287)
.-+.||= +...++.....+|...+.+|+.
T Consensus 203 ~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSa 233 (263)
T CHL00200 203 KPIILGFGISTSEQIKQIKGWNINGIVIGSA 233 (263)
T ss_pred CCEEEECCcCCHHHHHHHHhcCCCEEEECHH
Confidence 2355554 2244777888899999999874
No 325
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=44.58 E-value=1.8e+02 Score=24.06 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEcCC-chhhHHH-HHHcCceEEEECCC
Q 023114 224 EKPNPTIFLKACDLLGVKPEDAVHVGDD-RRNDVWG-ARDAGCDAWLWGSD 272 (287)
Q Consensus 224 ~KP~~~~~~~~~~~l~~~p~~~l~VGDs-~~~Di~~-a~~aG~~~i~v~~~ 272 (287)
.-|+.+.+..+.+..++ .+++.|+- ...|+.. ++..|+..+++++-
T Consensus 182 ~g~~~~~~~~i~~~~~i---pvia~GGi~s~~di~~~l~~~gadgV~vg~a 229 (232)
T TIGR03572 182 KGYDLELIKTVSDAVSI---PVIALGGAGSLDDLVEVALEAGASAVAAASL 229 (232)
T ss_pred CCCCHHHHHHHHhhCCC---CEEEECCCCCHHHHHHHHHHcCCCEEEEehh
Confidence 44677888888887665 38999952 1568888 88899999998863
No 326
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=44.20 E-value=2.5e+02 Score=25.50 Aligned_cols=91 Identities=22% Similarity=0.251 Sum_probs=55.7
Q ss_pred cc-HHHHHHHHHHcCCeEEEEeCC-Cc-chHHHHHhcCCcCccceEEec----c-cCCCCCCCHHHHHHHHHHcCCCCCC
Q 023114 173 PE-AEKVFKAIRKAGVKLAVVSNF-DT-RLRPVLRALNCDHWFDAVAVS----A-EVEAEKPNPTIFLKACDLLGVKPED 244 (287)
Q Consensus 173 pg-~~~ll~~L~~~g~~i~ivSn~-~~-~~~~~l~~~gl~~~f~~~~~~----~-~~~~~KP~~~~~~~~~~~l~~~p~~ 244 (287)
|+ +.+.++.+++.++.+.+-.+. +. +....+...|. |.++.. + ......+++..+...+++.+++
T Consensus 117 p~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGv----d~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ip--- 189 (368)
T PRK08649 117 PELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGV----DLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVP--- 189 (368)
T ss_pred HHHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCC----CEEEEeccchhhhccCCcCCHHHHHHHHHHCCCC---
Confidence 44 577889999887665553332 11 24555556665 444432 2 2223334677888888887654
Q ss_pred EEEEcC--CchhhHHHHHHcCceEEEECCC
Q 023114 245 AVHVGD--DRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 245 ~l~VGD--s~~~Di~~a~~aG~~~i~v~~~ 272 (287)
+++ || + ..+...+.++|+..|+++.+
T Consensus 190 VIa-G~V~t-~e~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 190 VIV-GGCVT-YTTALHLMRTGAAGVLVGIG 217 (368)
T ss_pred EEE-eCCCC-HHHHHHHHHcCCCEEEECCC
Confidence 343 44 3 56677777899999998855
No 327
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=43.97 E-value=12 Score=37.24 Aligned_cols=110 Identities=15% Similarity=0.081 Sum_probs=63.9
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcC----cc--------------------ceEEecccCCCC
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDH----WF--------------------DAVAVSAEVEAE 224 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~----~f--------------------~~~~~~~~~~~~ 224 (287)
++.+.+.+.+..+++.|+|++.+|+.-.. ...+.+..|+-. .+ ..++.+.+..
T Consensus 590 PPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL~-- 667 (1019)
T KOG0203|consen 590 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSELP-- 667 (1019)
T ss_pred CCcccCchhhhhhhhhCceEEEEecCccchhhhhhhheeeecCCchhhhhhHHhcCCcccccCccccceEEEeccccc--
Confidence 45678889999999999999999987554 455656555311 01 1223333221
Q ss_pred CCCHHHHHHHHHHcC------CCCC--------------CEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 225 KPNPTIFLKACDLLG------VKPE--------------DAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 225 KP~~~~~~~~~~~l~------~~p~--------------~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
.=.++-+..+++... .+|+ =+-+.|| +.||-.+.+.|-+...+=-.|..--++.+++
T Consensus 668 ~~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGD-GVNDsPALKKADIGVAMGiaGSDvsKqAADm 744 (1019)
T KOG0203|consen 668 DMSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGD-GVNDSPALKKADIGVAMGIAGSDVSKQAADM 744 (1019)
T ss_pred ccCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCC-CcCCChhhcccccceeeccccchHHHhhcce
Confidence 123334444443322 1222 2446699 5999999999998876622223444444443
No 328
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=43.75 E-value=27 Score=30.89 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=25.3
Q ss_pred ccCCccHHHHHHHHHHcCCeEEEEeCCCc
Q 023114 169 HLCDPEAEKVFKAIRKAGVKLAVVSNFDT 197 (287)
Q Consensus 169 ~~~~pg~~~ll~~L~~~g~~i~ivSn~~~ 197 (287)
+.+.|++.++++.+++.|..+.++||+.-
T Consensus 83 PLL~pdl~eiv~~~~~~g~~v~l~TNG~l 111 (318)
T TIGR03470 83 PLLHPEIDEIVRGLVARKKFVYLCTNALL 111 (318)
T ss_pred ccccccHHHHHHHHHHcCCeEEEecCcee
Confidence 34679999999999999999999999864
No 329
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=43.54 E-value=2e+02 Score=24.16 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEc--CCchhhHHHHHHcCceEEEECCC
Q 023114 222 EAEKPNPTIFLKACDLLGVKPEDAVHVG--DDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 222 ~~~KP~~~~~~~~~~~l~~~p~~~l~VG--Ds~~~Di~~a~~aG~~~i~v~~~ 272 (287)
...=|+.+.+..+++..+++ +++-| -| ..|+..+..+|+..+.+++-
T Consensus 175 t~~G~~~~li~~l~~~~~ip---vi~~GGi~s-~edi~~l~~~G~~~vivG~a 223 (234)
T PRK13587 175 KMSGPNFELTGQLVKATTIP---VIASGGIRH-QQDIQRLASLNVHAAIIGKA 223 (234)
T ss_pred CCCccCHHHHHHHHHhCCCC---EEEeCCCCC-HHHHHHHHHcCCCEEEEhHH
Confidence 34558888888888876553 66666 33 67999999999999998873
No 330
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=43.31 E-value=2.1e+02 Score=24.44 Aligned_cols=49 Identities=12% Similarity=0.065 Sum_probs=35.2
Q ss_pred HHHHHHcCCCCCCEEEEcCCch-----hhHHHHHHcCceEEEECCC--------CCCHHHHHHHh
Q 023114 232 LKACDLLGVKPEDAVHVGDDRR-----NDVWGARDAGCDAWLWGSD--------VHSFKEVAQRI 283 (287)
Q Consensus 232 ~~~~~~l~~~p~~~l~VGDs~~-----~Di~~a~~aG~~~i~v~~~--------~~~~~el~~~l 283 (287)
..++++++++ +++.=||+. .=+++|++.|+++|++.++ .++.+|+.+.+
T Consensus 190 ~al~~~~~i~---~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~el~~~l 251 (256)
T TIGR00715 190 KALLREYRID---AVVTKASGEQGGELEKVKAAEALGINVIRIARPQTIPGVAIFDDISQLNQFV 251 (256)
T ss_pred HHHHHHcCCC---EEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCCCCccCCCHHHHHHHH
Confidence 4566777763 677666533 4589999999999999876 35667776655
No 331
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.11 E-value=2.5e+02 Score=25.15 Aligned_cols=38 Identities=16% Similarity=0.395 Sum_probs=31.0
Q ss_pred HHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceE
Q 023114 178 VFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAV 215 (287)
Q Consensus 178 ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~ 215 (287)
.++..++.|+++.++|.+++.-+..++.+|-+.|++..
T Consensus 197 aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 197 AVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred HHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEec
Confidence 46777889999999999988888889999987655433
No 332
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=43.06 E-value=1.5e+02 Score=27.42 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=34.6
Q ss_pred CeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEc
Q 023114 187 VKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVG 249 (287)
Q Consensus 187 ~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VG 249 (287)
-+|+|||+.+.. +..++..+.-....-.+....-..-+.-.+.-+..+++.++-..-++|.|+
T Consensus 136 ~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~ 199 (438)
T PRK00286 136 KRIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVA 199 (438)
T ss_pred CEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEe
Confidence 578999988776 566666554322211222222223344455666666666654324677774
No 333
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=42.89 E-value=85 Score=26.62 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=12.9
Q ss_pred HHHHHHHHcCCeEEEEeCCCcc
Q 023114 177 KVFKAIRKAGVKLAVVSNFDTR 198 (287)
Q Consensus 177 ~ll~~L~~~g~~i~ivSn~~~~ 198 (287)
++++...++|++++++-+.+..
T Consensus 96 ~ll~~~~~~~~~v~llG~~~~v 117 (243)
T PRK03692 96 ALMARAGKEGTPVFLVGGKPEV 117 (243)
T ss_pred HHHHHHHhcCCeEEEECCCHHH
Confidence 4555555566777777555443
No 334
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=42.62 E-value=42 Score=24.61 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=23.4
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR 198 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~ 198 (287)
.+++.+.++.++++|.+++.+|+.+..
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 367889999999999999999998655
No 335
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=42.57 E-value=66 Score=26.78 Aligned_cols=91 Identities=20% Similarity=0.271 Sum_probs=58.5
Q ss_pred CCccHH-HHHHHHHHcCCeEEEEeCCCcc------hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCC
Q 023114 171 CDPEAE-KVFKAIRKAGVKLAVVSNFDTR------LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPE 243 (287)
Q Consensus 171 ~~pg~~-~ll~~L~~~g~~i~ivSn~~~~------~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~ 243 (287)
+.|++. ++...+++.|++..|+...... +...++..|+.-.|...+++-+- .++ ..+..-++.+|-+ .
T Consensus 60 lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~-~~~---p~i~~F~~~fGkP-~ 134 (217)
T PF02593_consen 60 LHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEE-NGN---PQIDEFAEYFGKP-K 134 (217)
T ss_pred cCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCccccccCC-CCC---hhHHHHHHHhCCc-e
Confidence 568876 7778888899999998875433 68888898987667776665432 233 3455556668853 3
Q ss_pred CEEEEcCCchhhHHHHHHcCceE
Q 023114 244 DAVHVGDDRRNDVWGARDAGCDA 266 (287)
Q Consensus 244 ~~l~VGDs~~~Di~~a~~aG~~~ 266 (287)
==+.|.|+...|+.-.+.|=|.+
T Consensus 135 ~ei~v~~~~I~~V~VlR~aPCGs 157 (217)
T PF02593_consen 135 VEIEVENGKIKDVKVLRSAPCGS 157 (217)
T ss_pred EEEEecCCcEEEEEEEecCCCcc
Confidence 33445554566665555554443
No 336
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=41.93 E-value=56 Score=29.19 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=29.3
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc---hHHHHHhcCC
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR---LRPVLRALNC 208 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~---~~~~l~~~gl 208 (287)
.+.|++.++++.+++.|+.+.+.||+.-. ....+...|+
T Consensus 65 ll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~ 106 (358)
T TIGR02109 65 LARPDLVELVAHARRLGLYTNLITSGVGLTEARLDALADAGL 106 (358)
T ss_pred cccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCC
Confidence 35789999999999999999999998633 3333444554
No 337
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=41.75 E-value=2.2e+02 Score=24.27 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=60.4
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEE-ecccCCCCCCCHHHHHHHHHHcCCCCC-CEEEEcC
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVA-VSAEVEAEKPNPTIFLKACDLLGVKPE-DAVHVGD 250 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~-~~~~~~~~KP~~~~~~~~~~~l~~~p~-~~l~VGD 250 (287)
+.+.++++..+..|..+.+-.....++.... .+|. +.+- ...+.....++.+....+++.+. .. -++..|-
T Consensus 147 ~~l~~li~~a~~lGl~~lvevh~~~E~~~A~-~~ga----diIgin~rdl~~~~~d~~~~~~l~~~~p--~~~~vIaegG 219 (260)
T PRK00278 147 EQLKELLDYAHSLGLDVLVEVHDEEELERAL-KLGA----PLIGINNRNLKTFEVDLETTERLAPLIP--SDRLVVSESG 219 (260)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH-HcCC----CEEEECCCCcccccCCHHHHHHHHHhCC--CCCEEEEEeC
Confidence 3688899999999988887776655554433 3443 3222 22234445677777777777642 12 2444442
Q ss_pred -CchhhHHHHHHcCceEEEECCC
Q 023114 251 -DRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 251 -s~~~Di~~a~~aG~~~i~v~~~ 272 (287)
+...|+..+..+|...+++++.
T Consensus 220 I~t~ed~~~~~~~Gad~vlVGsa 242 (260)
T PRK00278 220 IFTPEDLKRLAKAGADAVLVGES 242 (260)
T ss_pred CCCHHHHHHHHHcCCCEEEECHH
Confidence 1256999999999999999986
No 338
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=41.70 E-value=46 Score=27.68 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCc
Q 023114 177 KVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCD 209 (287)
Q Consensus 177 ~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~ 209 (287)
+.++ ++++|++++++|+.+.. +..+++.+++.
T Consensus 22 ~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~ 54 (236)
T TIGR02471 22 ELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLP 54 (236)
T ss_pred HHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCC
Confidence 3444 46778999999998877 78888888875
No 339
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=41.55 E-value=1.3e+02 Score=27.59 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=47.0
Q ss_pred CCeEEEEe--CCCcchHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCC-chhhHHHHHHc
Q 023114 186 GVKLAVVS--NFDTRLRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDD-RRNDVWGARDA 262 (287)
Q Consensus 186 g~~i~ivS--n~~~~~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs-~~~Di~~a~~a 262 (287)
|.++.... |+...+-+++...|.. ||..-.++ +..+ .+.|.+|+++++-|.. ...++..|.+.
T Consensus 52 ~~~i~yAvKAn~~~~il~~l~~~g~g--~Dv~S~gE-----------l~~a-l~aG~~~~~I~f~g~~ks~~ei~~a~e~ 117 (394)
T COG0019 52 GAKVFYAVKANSNPAILRLLAEEGSG--FDVASLGE-----------LELA-LAAGFPPERIVFSGPAKSEEEIAFALEL 117 (394)
T ss_pred CceEEEEEcCCCCHHHHHHHHHhCCC--ceecCHHH-----------HHHH-HHcCCChhhEEECCCCCCHHHHHHHHHc
Confidence 46676665 4444477788877654 45442221 2233 3349999999998873 15678999999
Q ss_pred CceEEEECC
Q 023114 263 GCDAWLWGS 271 (287)
Q Consensus 263 G~~~i~v~~ 271 (287)
|...|.+++
T Consensus 118 gi~~i~vdS 126 (394)
T COG0019 118 GIKLINVDS 126 (394)
T ss_pred CCcEEEeCC
Confidence 999888555
No 340
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=41.15 E-value=16 Score=25.20 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=12.8
Q ss_pred eEEEEeCCCCccCCC
Q 023114 75 KALLVDAAGTLLVPS 89 (287)
Q Consensus 75 k~vifD~DGTLid~~ 89 (287)
-.|+++-|||.+|++
T Consensus 40 ~~lvLeeDGT~Vd~E 54 (81)
T cd06537 40 LTLVLEEDGTAVDSE 54 (81)
T ss_pred eEEEEecCCCEEccH
Confidence 569999999999854
No 341
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=41.10 E-value=37 Score=24.97 Aligned_cols=27 Identities=7% Similarity=0.241 Sum_probs=23.6
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR 198 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~ 198 (287)
.+++.+.++.++++|.+++.+|+....
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 377899999999999999999987655
No 342
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=41.04 E-value=16 Score=24.99 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=13.1
Q ss_pred eeEEEEeCCCCccCCC
Q 023114 74 HKALLVDAAGTLLVPS 89 (287)
Q Consensus 74 ~k~vifD~DGTLid~~ 89 (287)
.-.|+++-|||.+|++
T Consensus 40 ~~~lvL~eDGT~Vd~E 55 (78)
T cd06539 40 LVTLVLEEDGTVVDTE 55 (78)
T ss_pred CcEEEEeCCCCEEccH
Confidence 3568999999999854
No 343
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=40.91 E-value=1.3e+02 Score=24.16 Aligned_cols=20 Identities=5% Similarity=0.046 Sum_probs=9.4
Q ss_pred HHHHHHHHcCCeEEEEeCCC
Q 023114 177 KVFKAIRKAGVKLAVVSNFD 196 (287)
Q Consensus 177 ~ll~~L~~~g~~i~ivSn~~ 196 (287)
++++...++|.+++++-+.+
T Consensus 39 ~l~~~~~~~~~~vfllG~~~ 58 (177)
T TIGR00696 39 ELCQRAGKEKLPIFLYGGKP 58 (177)
T ss_pred HHHHHHHHcCCeEEEECCCH
Confidence 34444444455555554443
No 344
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=40.88 E-value=24 Score=26.48 Aligned_cols=13 Identities=8% Similarity=0.015 Sum_probs=11.5
Q ss_pred CeeEEEEeCCCCc
Q 023114 73 THKALLVDAAGTL 85 (287)
Q Consensus 73 ~~k~vifD~DGTL 85 (287)
.+..|+|||.+||
T Consensus 44 ~P~iV~FDmK~Tl 56 (128)
T PRK13717 44 APVTAAFNMKQTV 56 (128)
T ss_pred CCeEEEEehHHHH
Confidence 4588999999999
No 345
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.33 E-value=1.7e+02 Score=26.95 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=32.4
Q ss_pred cceEEecccCCCCCCCHHHHHHHHHHcC-CCCCCEEEEcCCchhhHHHHH
Q 023114 212 FDAVAVSAEVEAEKPNPTIFLKACDLLG-VKPEDAVHVGDDRRNDVWGAR 260 (287)
Q Consensus 212 f~~~~~~~~~~~~KP~~~~~~~~~~~l~-~~p~~~l~VGDs~~~Di~~a~ 260 (287)
||.++ .|..+.-|-+...|....+--+ ++|+++|+|=|. ..+-.+..
T Consensus 184 fdvII-vDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDa-siGQaae~ 231 (483)
T KOG0780|consen 184 FDVII-VDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDA-SIGQAAEA 231 (483)
T ss_pred CcEEE-EeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEec-cccHhHHH
Confidence 44443 3445566777888888776654 689999999996 66665543
No 346
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=39.98 E-value=1.4e+02 Score=21.36 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=32.9
Q ss_pred HHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEE
Q 023114 200 RPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWL 268 (287)
Q Consensus 200 ~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~ 268 (287)
...+++.++.+. +.++..-+.. ..--..-..+++++-. ..+++.-++ .......+.+|...+.
T Consensus 52 ~~~l~~a~i~~a-~~vv~~~~~d---~~n~~~~~~~r~~~~~-~~ii~~~~~-~~~~~~l~~~g~d~vi 114 (116)
T PF02254_consen 52 PEVLERAGIEKA-DAVVILTDDD---EENLLIALLARELNPD-IRIIARVND-PENAELLRQAGADHVI 114 (116)
T ss_dssp HHHHHHTTGGCE-SEEEEESSSH---HHHHHHHHHHHHHTTT-SEEEEEESS-HHHHHHHHHTT-SEEE
T ss_pred hhHHhhcCcccc-CEEEEccCCH---HHHHHHHHHHHHHCCC-CeEEEEECC-HHHHHHHHHCCcCEEE
Confidence 445666677653 4443332211 0011222344554533 356666665 7788888889988765
No 347
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=39.55 E-value=1.5e+02 Score=21.69 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=26.8
Q ss_pred eEEEEeCCCCccCCCccHHHHHHHHHHHhCCCCCHHH
Q 023114 75 KALLVDAAGTLLVPSQPMAQIYREIGEKYGVAYSEAE 111 (287)
Q Consensus 75 k~vifD~DGTLid~~~~~~~~~~~~~~~~g~~~~~~~ 111 (287)
+.|-+|=||=|+|.+.-..+....++++-|+..+.+.
T Consensus 6 ~~i~~D~~GfL~~~~dW~e~vA~~lA~~egieLT~~H 42 (108)
T TIGR03342 6 KEIELDEDGYLLDLDDWSEDVAEALAEEEGIELTEAH 42 (108)
T ss_pred eeeeeCCCCCcCChHHCCHHHHHHHHHHcCCCCCHHH
Confidence 4588899999999666556666666777787766544
No 348
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=39.45 E-value=3e+02 Score=25.19 Aligned_cols=94 Identities=22% Similarity=0.224 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHcCCeEEE-EeCCCcchHHHHHhcCCcCccceEEecc--cCCCCCCCHHHHHHHHHHcCCCCCCEEEEcC
Q 023114 174 EAEKVFKAIRKAGVKLAV-VSNFDTRLRPVLRALNCDHWFDAVAVSA--EVEAEKPNPTIFLKACDLLGVKPEDAVHVGD 250 (287)
Q Consensus 174 g~~~ll~~L~~~g~~i~i-vSn~~~~~~~~l~~~gl~~~f~~~~~~~--~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGD 250 (287)
-+.+.++..++.|.++++ ..|-....+ .++.+. ...|.+.... +.+...|... -...+++++.+ -.+.+-|-
T Consensus 264 ti~~ai~~akk~GikvgVD~lnp~tp~e-~i~~l~--~~vD~Vllht~vdp~~~~~~~~-kI~~ikk~~~~-~~I~VdGG 338 (391)
T PRK13307 264 TIEKAIHEAQKTGIYSILDMLNVEDPVK-LLESLK--VKPDVVELHRGIDEEGTEHAWG-NIKEIKKAGGK-ILVAVAGG 338 (391)
T ss_pred HHHHHHHHHHHcCCEEEEEEcCCCCHHH-HHHHhh--CCCCEEEEccccCCCcccchHH-HHHHHHHhCCC-CcEEEECC
Confidence 367789999999999999 667443322 222221 1134333221 1121223222 22334444322 23455542
Q ss_pred CchhhHHHHHHcCceEEEECCC
Q 023114 251 DRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 251 s~~~Di~~a~~aG~~~i~v~~~ 272 (287)
=...++..+..+|...+.+++.
T Consensus 339 I~~eti~~l~~aGADivVVGsa 360 (391)
T PRK13307 339 VRVENVEEALKAGADILVVGRA 360 (391)
T ss_pred cCHHHHHHHHHcCCCEEEEeHH
Confidence 2367888899999999888876
No 349
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=39.03 E-value=2.2e+02 Score=24.12 Aligned_cols=96 Identities=20% Similarity=0.183 Sum_probs=66.9
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcch------HHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCC-C
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTRL------RPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPE-D 244 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~~------~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~-~ 244 (287)
.|+-..+++.++..++.+.=-|.+-+.. -+..+..+-.+|+..-+.+++. .--|++.-..++++.|--+.- =
T Consensus 55 ~~~~~~~l~~l~~~~~~~LPNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~-tLlPD~~etl~Aae~Lv~eGF~V 133 (262)
T COG2022 55 RPGGDGILDLLIPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEK-TLLPDPIETLKAAEQLVKEGFVV 133 (262)
T ss_pred CCCcchHHHHhhhcCcEeCCCccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCc-ccCCChHHHHHHHHHHHhCCCEE
Confidence 4667788888888887777677665542 2233344556777777777653 456888888888888732222 2
Q ss_pred EEEEcCCchhhHHHHHHcCceEEEE
Q 023114 245 AVHVGDDRRNDVWGARDAGCDAWLW 269 (287)
Q Consensus 245 ~l~VGDs~~~Di~~a~~aG~~~i~v 269 (287)
.-++.|+ ..-..-..++||.+++-
T Consensus 134 lPY~~dD-~v~arrLee~GcaavMP 157 (262)
T COG2022 134 LPYTTDD-PVLARRLEEAGCAAVMP 157 (262)
T ss_pred eeccCCC-HHHHHHHHhcCceEecc
Confidence 3478887 88899999999999763
No 350
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=38.93 E-value=49 Score=25.62 Aligned_cols=33 Identities=9% Similarity=0.269 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc--hHHHHHh
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR--LRPVLRA 205 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~--~~~~l~~ 205 (287)
+++.++++.+++.|+++.+.||.... ...+++.
T Consensus 75 ~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~ 109 (147)
T TIGR02826 75 EALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQH 109 (147)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHh
Confidence 66889999999999999999996543 2444433
No 351
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=38.74 E-value=37 Score=28.33 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=7.9
Q ss_pred EEeCCCCccCCCc
Q 023114 78 LVDAAGTLLVPSQ 90 (287)
Q Consensus 78 ifD~DGTLid~~~ 90 (287)
+||+||||.+...
T Consensus 1 ~lDyDGTL~p~~~ 13 (235)
T PF02358_consen 1 FLDYDGTLAPIVD 13 (235)
T ss_dssp EEE-TTTSS---S
T ss_pred CcccCCccCCCCC
Confidence 6899999997544
No 352
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=38.72 E-value=2.2e+02 Score=23.42 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEcC-CchhhHHHHHHcCceEEEECCC
Q 023114 224 EKPNPTIFLKACDLLGVKPEDAVHVGD-DRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 224 ~KP~~~~~~~~~~~l~~~p~~~l~VGD-s~~~Di~~a~~aG~~~i~v~~~ 272 (287)
..++.+.+..+.+..+++ +++=|+ ....|+..+...|+..+++++.
T Consensus 174 ~g~~~~~i~~i~~~~~ip---via~GGi~~~~di~~~~~~Gadgv~ig~a 220 (230)
T TIGR00007 174 SGPNFELTKELVKAVNVP---VIASGGVSSIDDLIALKKLGVYGVIVGKA 220 (230)
T ss_pred CCCCHHHHHHHHHhCCCC---EEEeCCCCCHHHHHHHHHCCCCEEEEeHH
Confidence 457788888888885542 555553 1257888889999999998873
No 353
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=38.72 E-value=1.5e+02 Score=23.22 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCC-cCccceEEecccCC
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNC-DHWFDAVAVSAEVE 222 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl-~~~f~~~~~~~~~~ 222 (287)
..+.++|..+++.|.+|++.-.+.+ -..++..+|+ .+.++.++..+...
T Consensus 55 ~~l~~~L~~~~~~gk~I~~yGA~~k-g~tlln~~g~~~~~I~~vvD~np~K 104 (160)
T PF08484_consen 55 AELREFLEKLKAEGKRIAGYGAGAK-GNTLLNYFGLDNDLIDYVVDDNPLK 104 (160)
T ss_dssp HHHHHHHHHHHHTT--EEEE---SH-HHHHHHHHT--TTTS--EEES-GGG
T ss_pred HHHHHHHHHHHHcCCEEEEECcchH-HHHHHHHhCCCcceeEEEEeCChhh
Confidence 5678999999999988888766543 3455777888 45577777665433
No 354
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=38.69 E-value=18 Score=24.52 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=13.1
Q ss_pred eeEEEEeCCCCccCCC
Q 023114 74 HKALLVDAAGTLLVPS 89 (287)
Q Consensus 74 ~k~vifD~DGTLid~~ 89 (287)
.-.|+++-|||.++++
T Consensus 38 ~~~l~L~eDGT~VddE 53 (74)
T smart00266 38 PVTLVLEEDGTIVDDE 53 (74)
T ss_pred CcEEEEecCCcEEccH
Confidence 3568899999999854
No 355
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=38.42 E-value=62 Score=29.20 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=29.3
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc---hHHHHHhcCC
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR---LRPVLRALNC 208 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~---~~~~l~~~gl 208 (287)
.+.|++.++++++++.|+.+.+.||+.-. ....+...|+
T Consensus 74 ll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~ 115 (378)
T PRK05301 74 LLRKDLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGL 115 (378)
T ss_pred CCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCC
Confidence 35688999999999999999999998633 3334555554
No 356
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=38.16 E-value=2.2e+02 Score=23.24 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=58.3
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceE-EecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcC-
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAV-AVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGD- 250 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~-~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGD- 250 (287)
+.++++++..+..|..+.+...+..++.... .+|. +.+ ++..+.....|+.+.+..+.+.+.. .-.++..|-
T Consensus 108 ~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~-~~g~----~~i~~t~~~~~~~~~~~~~~~~l~~~~~~-~~pvia~gGI 181 (217)
T cd00331 108 EQLKELYELARELGMEVLVEVHDEEELERAL-ALGA----KIIGINNRDLKTFEVDLNTTERLAPLIPK-DVILVSESGI 181 (217)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCHHHHHHHH-HcCC----CEEEEeCCCccccCcCHHHHHHHHHhCCC-CCEEEEEcCC
Confidence 4566777777778887766665544444433 3343 332 3333444556777777777776531 123454443
Q ss_pred CchhhHHHHHHcCceEEEECCC
Q 023114 251 DRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 251 s~~~Di~~a~~aG~~~i~v~~~ 272 (287)
+...|+..+..+|...+.+++.
T Consensus 182 ~s~edi~~~~~~Ga~gvivGsa 203 (217)
T cd00331 182 STPEDVKRLAEAGADAVLIGES 203 (217)
T ss_pred CCHHHHHHHHHcCCCEEEECHH
Confidence 2247999999999999999986
No 357
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=38.16 E-value=1.5e+02 Score=25.15 Aligned_cols=92 Identities=23% Similarity=0.298 Sum_probs=67.7
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcch------HHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHc---CCCCC
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTRL------RPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLL---GVKPE 243 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~~------~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l---~~~p~ 243 (287)
.+-..+++.+...++.+.--|++-+.. -++.+.++-.+|+..-+..|+. .--|++.-...+++.| |+
T Consensus 49 ~~~~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~-~Llpd~~~tv~aa~~L~~~Gf--- 124 (248)
T cd04728 49 PGGESFLDLLDKSGYTLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDK-TLLPDPIETLKAAEILVKEGF--- 124 (248)
T ss_pred CCcchHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCcc-ccccCHHHHHHHHHHHHHCCC---
Confidence 355677777877778777777765542 3344555667778777777653 3468888899999999 65
Q ss_pred CEE-EEcCCchhhHHHHHHcCceEEEE
Q 023114 244 DAV-HVGDDRRNDVWGARDAGCDAWLW 269 (287)
Q Consensus 244 ~~l-~VGDs~~~Di~~a~~aG~~~i~v 269 (287)
.++ ++-|+ ..-.....++|+..++.
T Consensus 125 ~vlpyc~dd-~~~ar~l~~~G~~~vmP 150 (248)
T cd04728 125 TVLPYCTDD-PVLAKRLEDAGCAAVMP 150 (248)
T ss_pred EEEEEeCCC-HHHHHHHHHcCCCEeCC
Confidence 467 89998 88889999999998865
No 358
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=38.12 E-value=12 Score=25.03 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcC
Q 023114 223 AEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAG 263 (287)
Q Consensus 223 ~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG 263 (287)
...|-...+..+++++.+++..+..|-++ ..+|...+.||
T Consensus 24 E~apftaVlkfaAeeF~vp~~tsaiItnd-G~GInP~QTag 63 (76)
T PF03671_consen 24 EEAPFTAVLKFAAEEFKVPPATSAIITND-GVGINPQQTAG 63 (76)
T ss_dssp TTSBHHHHHHHHHHHTTS-SSSEEEEESS-S-EE-TTSBHH
T ss_pred CCCchHHHHHHHHHHcCCCCceEEEEecC-Ccccccchhhh
Confidence 35677889999999999999999999887 77777766665
No 359
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=37.74 E-value=34 Score=22.72 Aligned_cols=20 Identities=40% Similarity=0.503 Sum_probs=13.6
Q ss_pred HHHHHHHcCCCCCCEEEEcC
Q 023114 231 FLKACDLLGVKPEDAVHVGD 250 (287)
Q Consensus 231 ~~~~~~~l~~~p~~~l~VGD 250 (287)
...++++.|+++.++|.|||
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~ 64 (69)
T PF09269_consen 45 VEKALRKAGAKEGDTVRIGD 64 (69)
T ss_dssp HHHHHHTTT--TT-EEEETT
T ss_pred HHHHHHHcCCCCCCEEEEcC
Confidence 35567788999999999998
No 360
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=37.74 E-value=2.3e+02 Score=24.68 Aligned_cols=92 Identities=5% Similarity=0.055 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccc---eEEecccCCCCCCCH---------HHHHHHHHHc-CCC
Q 023114 175 AEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFD---AVAVSAEVEAEKPNP---------TIFLKACDLL-GVK 241 (287)
Q Consensus 175 ~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~---~~~~~~~~~~~KP~~---------~~~~~~~~~l-~~~ 241 (287)
...+.+.|++ |+.+.+++++. ....++..|+..+.. ..+...+....+.+. ..+....+.+ ..+
T Consensus 17 ~~ala~~L~~-g~ev~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 93 (321)
T TIGR00661 17 SVAIGEALKN-DYEVSYIASGR--SKNYISKYGFKVFETFPGIKLKGEDGKVNIVKTLRNKEYSPKKAIRREINIIREYN 93 (321)
T ss_pred HHHHHHHHhC-CCeEEEEEcCC--HHHhhhhhcCcceeccCCceEeecCCcCcHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 3467778888 88888887655 334444444431110 011111111111111 1121222222 234
Q ss_pred CCCEEEEcCCchhhHHHHHHcCceEEEECC
Q 023114 242 PEDAVHVGDDRRNDVWGARDAGCDAWLWGS 271 (287)
Q Consensus 242 p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~ 271 (287)
|+ ++|+|....-..+|+..|++++.+.+
T Consensus 94 pD--lVi~d~~~~~~~aA~~~~iP~i~i~~ 121 (321)
T TIGR00661 94 PD--LIISDFEYSTVVAAKLLKIPVICISN 121 (321)
T ss_pred CC--EEEECCchHHHHHHHhcCCCEEEEec
Confidence 54 56666556668899999999997765
No 361
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=37.68 E-value=2.5e+02 Score=23.64 Aligned_cols=92 Identities=17% Similarity=0.158 Sum_probs=51.7
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc---hHHHHH-hcCCcCccceEEecccCCCC-C---CCHHHHHHHHHHcCCCCC
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR---LRPVLR-ALNCDHWFDAVAVSAEVEAE-K---PNPTIFLKACDLLGVKPE 243 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~---~~~~l~-~~gl~~~f~~~~~~~~~~~~-K---P~~~~~~~~~~~l~~~p~ 243 (287)
+++..++++.++++|.+.+++-+-... ++.+++ ..| |-.+++.....-. + +...-+...++++ .+
T Consensus 115 ~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~----~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~---~~ 187 (242)
T cd04724 115 PEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASG----FIYYVSRTGVTGARTELPDDLKELIKRIRKY---TD 187 (242)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCC----CEEEEeCCCCCCCccCCChhHHHHHHHHHhc---CC
Confidence 356778999999999977774443332 455555 333 2234443332211 1 2222222333333 23
Q ss_pred CEEEEcCCchh---hHHHHHHcCceEEEECCC
Q 023114 244 DAVHVGDDRRN---DVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 244 ~~l~VGDs~~~---Di~~a~~aG~~~i~v~~~ 272 (287)
--+.||= +.+ ++..+..+ ...+.+++.
T Consensus 188 ~pI~vgg-GI~~~e~~~~~~~~-ADgvVvGSa 217 (242)
T cd04724 188 LPIAVGF-GISTPEQAAEVAKY-ADGVIVGSA 217 (242)
T ss_pred CcEEEEc-cCCCHHHHHHHHcc-CCEEEECHH
Confidence 4567765 366 67777777 888888874
No 362
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=37.47 E-value=2.2e+02 Score=26.48 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=35.0
Q ss_pred CeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCC-CCEEEEc
Q 023114 187 VKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKP-EDAVHVG 249 (287)
Q Consensus 187 ~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p-~~~l~VG 249 (287)
.+|+|+|+.+.. +..++..+.-....-.+....-..-+.-.+.-+..+++.++-.+ -++|.|+
T Consensus 130 ~~i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~ 194 (432)
T TIGR00237 130 KRVGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVG 194 (432)
T ss_pred CEEEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEe
Confidence 579999988777 56666665433222223333323334555556666666665422 3677774
No 363
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=37.31 E-value=61 Score=23.84 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=23.4
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR 198 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~ 198 (287)
.+++.+.++.++++|.++..+|+....
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (120)
T cd05710 60 TKETVAAAKFAKEKGATVIGLTDDEDS 86 (120)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 367889999999999999999987655
No 364
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=36.77 E-value=2.9e+02 Score=24.12 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCC-CCCH----HHHHHHHHHcCCCCCCEEE
Q 023114 174 EAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAE-KPNP----TIFLKACDLLGVKPEDAVH 247 (287)
Q Consensus 174 g~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~-KP~~----~~~~~~~~~l~~~p~~~l~ 247 (287)
..+++|+..+++||-|.-+.-.+.+ +..+++...-.+ -..++........ .+.. .+...++++..++-.=+++
T Consensus 5 ~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~-sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lH 83 (286)
T PRK08610 5 SMKEMLIDAKENGYAVGQYNLNNLEFTQAILEASQEEN-APVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIH 83 (286)
T ss_pred cHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHC-CCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEE
Confidence 4678999999998877765544333 555555432111 1333333222111 1112 2344555565532222344
Q ss_pred EcCCc--hhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 248 VGDDR--RNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 248 VGDs~--~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
. |++ ..++..|-++|+.++|+.....+++|-...
T Consensus 84 L-DHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~ 119 (286)
T PRK08610 84 L-DHGSSFEKCKEAIDAGFTSVMIDASHSPFEENVAT 119 (286)
T ss_pred C-CCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHH
Confidence 3 441 566888889999999999887777765443
No 365
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.69 E-value=48 Score=22.35 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCce
Q 023114 221 VEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCD 265 (287)
Q Consensus 221 ~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~ 265 (287)
+....|-...+..+++++.+++.....|-++ .-+|..++.||--
T Consensus 33 vpestpftavlkfaaeefkvpaatsaiitnd-giginpaq~agnv 76 (94)
T KOG3483|consen 33 VPESTPFTAVLKFAAEEFKVPAATSAIITND-GIGINPAQTAGNV 76 (94)
T ss_pred CCCCCchHHHHHHHHHHccCCccceeEEecC-ccccCccccccce
Confidence 4567788899999999999999888888887 8889999999943
No 366
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=36.18 E-value=2.9e+02 Score=24.06 Aligned_cols=108 Identities=11% Similarity=0.088 Sum_probs=60.9
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCC-CCHHHH----HHHHHHcCCCCCCEE
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEK-PNPTIF----LKACDLLGVKPEDAV 246 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~K-P~~~~~----~~~~~~l~~~p~~~l 246 (287)
-..+++|+..+++||-|.-+.-.+.+ ++.+++...-.+ -..++...+....- ...+.+ ..++++.+.+-. +.
T Consensus 4 v~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~-sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VP-V~ 81 (288)
T TIGR00167 4 VDVKELLQDAKEEGYAIPAFNINNLETINAVLEAAAEEK-SPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVP-VA 81 (288)
T ss_pred ccHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHC-CCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCc-EE
Confidence 34678999999998888766544433 555555432211 13333333322211 223333 344555522222 33
Q ss_pred EEcCCc--hhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 247 HVGDDR--RNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 247 ~VGDs~--~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
.=-|+. ..++..|-++|+.+||+.....+++|-.++
T Consensus 82 lHLDHg~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~ 119 (288)
T TIGR00167 82 LHLDHGASEEDCAQAVKAGFSSVMIDGSHEPFEENIEL 119 (288)
T ss_pred EECCCCCCHHHHHHHHHcCCCEEEecCCCCCHHHHHHH
Confidence 334441 466778889999999999987777765443
No 367
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=35.83 E-value=2.6e+02 Score=23.26 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=50.3
Q ss_pred HHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCc-hhhHHHHHHcCceEEEECCC----CC
Q 023114 200 RPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDR-RNDVWGARDAGCDAWLWGSD----VH 274 (287)
Q Consensus 200 ~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~-~~Di~~a~~aG~~~i~v~~~----~~ 274 (287)
...+...|+...+-.-. ..+....-++.+.+..+++..+++ +++.|+=. ..|+.....+|+..+++++. ..
T Consensus 155 ~~~~~~~G~~~i~~~~~-~~~g~~~g~~~~~i~~i~~~~~iP---via~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~ 230 (241)
T PRK13585 155 AKRFEELGAGSILFTNV-DVEGLLEGVNTEPVKELVDSVDIP---VIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKF 230 (241)
T ss_pred HHHHHHcCCCEEEEEee-cCCCCcCCCCHHHHHHHHHhCCCC---EEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCc
Confidence 44455666643321111 112223446778888888887653 88888632 57999999999999999874 55
Q ss_pred CHHHHHHH
Q 023114 275 SFKEVAQR 282 (287)
Q Consensus 275 ~~~el~~~ 282 (287)
+++++...
T Consensus 231 ~~~~~~~~ 238 (241)
T PRK13585 231 TLEEAIEA 238 (241)
T ss_pred CHHHHHHH
Confidence 66665554
No 368
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=35.61 E-value=41 Score=28.31 Aligned_cols=94 Identities=19% Similarity=0.192 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCcch------HHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCC-EE
Q 023114 174 EAEKVFKAIRKAGVKLAVVSNFDTRL------RPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPED-AV 246 (287)
Q Consensus 174 g~~~ll~~L~~~g~~i~ivSn~~~~~------~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~-~l 246 (287)
+-..+++.++..++.+.--|++-+.. -++.+.++-.+|+..-+..|+. .--|++.-..++++.|--+.-. .-
T Consensus 50 ~~~~~~~~i~~~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~-~L~PD~~etl~Aae~Lv~eGF~VlP 128 (247)
T PF05690_consen 50 GGDNILDYIDRSGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDK-TLLPDPIETLKAAEILVKEGFVVLP 128 (247)
T ss_dssp TCHHCCCCTTCCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TT-T--B-HHHHHHHHHHHHHTT-EEEE
T ss_pred CCccHHHHhcccCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCC-CcCCChhHHHHHHHHHHHCCCEEee
Confidence 44677888888889999999876552 3344556667777777777653 3458999999998887322222 34
Q ss_pred EEcCCchhhHHHHHHcCceEEEE
Q 023114 247 HVGDDRRNDVWGARDAGCDAWLW 269 (287)
Q Consensus 247 ~VGDs~~~Di~~a~~aG~~~i~v 269 (287)
|+-|+ ..-..-..++||.+++.
T Consensus 129 Y~~~D-~v~akrL~d~GcaavMP 150 (247)
T PF05690_consen 129 YCTDD-PVLAKRLEDAGCAAVMP 150 (247)
T ss_dssp EE-S--HHHHHHHHHTT-SEBEE
T ss_pred cCCCC-HHHHHHHHHCCCCEEEe
Confidence 78887 88888889999999875
No 369
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=34.86 E-value=51 Score=21.85 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=17.0
Q ss_pred HHHHHHHcCCCCCCEEEEcC
Q 023114 231 FLKACDLLGVKPEDAVHVGD 250 (287)
Q Consensus 231 ~~~~~~~l~~~p~~~l~VGD 250 (287)
...++++.|+++.++|.|||
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~ 64 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVRIGD 64 (69)
T ss_pred HHHHHHHcCCCCCCEEEEcc
Confidence 45678888999999999998
No 370
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=34.83 E-value=61 Score=24.21 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=23.1
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCC
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFD 196 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~ 196 (287)
.+|-+.+++++.+++|+++++|.-+-
T Consensus 60 ~~~~l~~~~~~a~e~GVk~yvCe~s~ 85 (120)
T COG2044 60 NFPPLEELIKQAIEAGVKIYVCEQSL 85 (120)
T ss_pred CCCCHHHHHHHHHHcCCEEEEEcchh
Confidence 46889999999999999999999763
No 371
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=34.79 E-value=1.4e+02 Score=25.55 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=7.7
Q ss_pred EEEEcCCchhhHHHHH
Q 023114 245 AVHVGDDRRNDVWGAR 260 (287)
Q Consensus 245 ~l~VGDs~~~Di~~a~ 260 (287)
.+++|..+.-|+.+..
T Consensus 188 ~v~igVGg~fDv~sG~ 203 (253)
T COG1922 188 AVAIGVGGSFDVFSGR 203 (253)
T ss_pred ceEEeccceEEEecCC
Confidence 3555554445554433
No 372
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=34.68 E-value=1.8e+02 Score=26.06 Aligned_cols=59 Identities=22% Similarity=0.306 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcC--CeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCC
Q 023114 175 AEKVFKAIRKAG--VKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDD 251 (287)
Q Consensus 175 ~~~ll~~L~~~g--~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs 251 (287)
+.++.++|++.| ..++++|+.++. ++.-.+- .+-++.++++++ |+.+++|.|+
T Consensus 53 avkiydeL~~~GedveVA~VsG~~~~~v~ad~~I----------------------~~qld~vl~~~~--~~~~i~VsDG 108 (344)
T PF04123_consen 53 AVKIYDELKAEGEDVEVAVVSGSPDVGVEADRKI----------------------AEQLDEVLSKFD--PDSAIVVSDG 108 (344)
T ss_pred HHHHHHHHHhcCCCeEEEEEECCCCCchhhHHHH----------------------HHHHHHHHHhCC--CCEEEEEecC
Confidence 445666777765 678888887654 2111100 113445555555 5689999996
Q ss_pred chhhHHH
Q 023114 252 RRNDVWG 258 (287)
Q Consensus 252 ~~~Di~~ 258 (287)
+.|=..
T Consensus 109 -aeDE~v 114 (344)
T PF04123_consen 109 -AEDERV 114 (344)
T ss_pred -hhhhhh
Confidence 888443
No 373
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=33.67 E-value=2e+02 Score=23.18 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcC--------------------c-cceEEecccCCCCCCCHHHHHH
Q 023114 175 AEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDH--------------------W-FDAVAVSAEVEAEKPNPTIFLK 233 (287)
Q Consensus 175 ~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~--------------------~-f~~~~~~~~~~~~KP~~~~~~~ 233 (287)
+..+.+.+...|.++.+++-..+....+-+..|+.. . -..++..||... =+...+..
T Consensus 35 l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasm--v~~~~~~~ 112 (196)
T PF13604_consen 35 LKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASM--VDSRQLAR 112 (196)
T ss_dssp HHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG---BHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEEecccc--cCHHHHHH
Confidence 445666677788888888866554433333333210 0 012334444322 23455666
Q ss_pred HHHHcCCCCCCEEEEcCC
Q 023114 234 ACDLLGVKPEDAVHVGDD 251 (287)
Q Consensus 234 ~~~~l~~~p~~~l~VGDs 251 (287)
+++...-...++++|||.
T Consensus 113 ll~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 113 LLRLAKKSGAKLILVGDP 130 (196)
T ss_dssp HHHHS-T-T-EEEEEE-T
T ss_pred HHHHHHhcCCEEEEECCc
Confidence 666666556789999995
No 374
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=33.45 E-value=24 Score=24.17 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=12.5
Q ss_pred eEEEEeCCCCccCCC
Q 023114 75 KALLVDAAGTLLVPS 89 (287)
Q Consensus 75 k~vifD~DGTLid~~ 89 (287)
-.|+++-|||.++++
T Consensus 41 ~~lvL~eDGTeVddE 55 (78)
T cd01615 41 VTLVLEEDGTEVDDE 55 (78)
T ss_pred eEEEEeCCCcEEccH
Confidence 458999999999854
No 375
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=32.72 E-value=2.4e+02 Score=21.99 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHcCCCCCCEEEEc
Q 023114 225 KPNPTIFLKACDLLGVKPEDAVHVG 249 (287)
Q Consensus 225 KP~~~~~~~~~~~l~~~p~~~l~VG 249 (287)
-|+++....+++ .|++++++...|
T Consensus 143 Vase~~~~~l~~-~Gi~~~~I~vtG 166 (169)
T PF06925_consen 143 VASEEVKEELIE-RGIPPERIHVTG 166 (169)
T ss_pred ECCHHHHHHHHH-cCCChhHEEEeC
Confidence 345566666666 699999888776
No 376
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=32.38 E-value=3e+02 Score=23.08 Aligned_cols=107 Identities=10% Similarity=0.064 Sum_probs=61.7
Q ss_pred ccHHHHHHHHHHcCC--eEEEEeCCCcchHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHH------HcCCCCCC
Q 023114 173 PEAEKVFKAIRKAGV--KLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACD------LLGVKPED 244 (287)
Q Consensus 173 pg~~~ll~~L~~~g~--~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~------~l~~~p~~ 244 (287)
+...++++.+++.|. +.+|+=|-.+.+..+...++.-+++-.+......+-.+--+..+.++.+ +.|. +-
T Consensus 103 ~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~--~~ 180 (228)
T PRK08091 103 HDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRV--EK 180 (228)
T ss_pred ccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCC--Cc
Confidence 567899999999999 9999988766654444443333332222222233334455566655543 2232 22
Q ss_pred EEEEcCCchh--hHHHHHHcCceEEEECCCC---CCHHHHHHH
Q 023114 245 AVHVGDDRRN--DVWGARDAGCDAWLWGSDV---HSFKEVAQR 282 (287)
Q Consensus 245 ~l~VGDs~~~--Di~~a~~aG~~~i~v~~~~---~~~~el~~~ 282 (287)
.+-|+- +.| .+....++|...+..|+.. .+.++..+.
T Consensus 181 ~IeVDG-GI~~~ti~~l~~aGaD~~V~GSalF~~~d~~~~i~~ 222 (228)
T PRK08091 181 LISIDG-SMTLELASYLKQHQIDWVVSGSALFSQGELKTTLKE 222 (228)
T ss_pred eEEEEC-CCCHHHHHHHHHCCCCEEEEChhhhCCCCHHHHHHH
Confidence 355543 243 4666788999988777752 344444443
No 377
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=32.37 E-value=3.7e+02 Score=24.09 Aligned_cols=108 Identities=17% Similarity=0.148 Sum_probs=68.4
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEEecc--cCCCCCCCHHHHHHHHHHc---CCCCCCEEEE
Q 023114 174 EAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSA--EVEAEKPNPTIFLKACDLL---GVKPEDAVHV 248 (287)
Q Consensus 174 g~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~--~~~~~KP~~~~~~~~~~~l---~~~p~~~l~V 248 (287)
...++++..+..|..+.|=-....++...++..| ..+++.+ +...-+-+......++... .++|++++.|
T Consensus 218 ~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~g-----a~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~V 292 (338)
T PLN02460 218 DIKYMLKICKSLGMAALIEVHDEREMDRVLGIEG-----VELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVV 292 (338)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----CCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEE
Confidence 5788888888889877765555455666665423 1233333 2333444566666666643 3456788888
Q ss_pred cCCc---hhhHHHHHHcCceEEEECCC----CCCHHHHHHHhCcC
Q 023114 249 GDDR---RNDVWGARDAGCDAWLWGSD----VHSFKEVAQRIGVK 286 (287)
Q Consensus 249 GDs~---~~Di~~a~~aG~~~i~v~~~----~~~~~el~~~l~~~ 286 (287)
.-|+ ..|+...+.+|+++++||.. .+.-+.+.++++.+
T Consensus 293 sESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp~~~l~~L~~~~ 337 (338)
T PLN02460 293 GESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDPGKGIAGLFGKD 337 (338)
T ss_pred ECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHHHHhCCC
Confidence 8654 46799999999999999975 22333455555543
No 378
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=32.22 E-value=95 Score=23.60 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEEeccc----------------CCCCCCCHHHHHHHHHHcCC
Q 023114 177 KVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAE----------------VEAEKPNPTIFLKACDLLGV 240 (287)
Q Consensus 177 ~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~----------------~~~~KP~~~~~~~~~~~l~~ 240 (287)
.++..|+..||.-+||.+.-+....+ -.|=.+|+|.++.... .....|... |..+++.|-
T Consensus 3 ~v~~~Lr~~Gy~AaiCkS~W~~s~~~--p~G~yeyidV~~~~~~~~~~~R~iVd~dFr~~FeiARpt~~-Y~~ll~~LP- 78 (131)
T TIGR01615 3 IVMSLLRSLGYDAAICKSKWDSSGDI--PAGKYEYIDVVDGDGSKKQEMRVIIDLDFRSEFEIARPTEE-YKRLLESLP- 78 (131)
T ss_pred hHHHHHHHCCCCeeeEEeecCCCCCC--CCCceeeEEEEecCCCCCCcceEEEeccchhhceecCCCHH-HHHHHHhCC-
Confidence 56789999999999998754432111 1244566676665542 122455544 888887654
Q ss_pred CCCCEEEEcCCchhhHHH
Q 023114 241 KPEDAVHVGDDRRNDVWG 258 (287)
Q Consensus 241 ~p~~~l~VGDs~~~Di~~ 258 (287)
.+|||- ...+..
T Consensus 79 ----~vFVG~--~~rL~~ 90 (131)
T TIGR01615 79 ----EVFVGT--TERLRQ 90 (131)
T ss_pred ----cceECC--HHHHHH
Confidence 389984 555543
No 379
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=32.08 E-value=74 Score=25.17 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=23.4
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR 198 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~ 198 (287)
.+++.+.++.++++|.+++.+|+....
T Consensus 85 t~~~i~~~~~ak~~g~~ii~IT~~~~s 111 (179)
T TIGR03127 85 TESLVTVAKKAKEIGATVAAITTNPES 111 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 367889999999999999999987655
No 380
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=32.07 E-value=3.7e+02 Score=24.26 Aligned_cols=105 Identities=9% Similarity=0.106 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCcch---HHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcC
Q 023114 174 EAEKVFKAIRKAGVKLAVVSNFDTRL---RPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGD 250 (287)
Q Consensus 174 g~~~ll~~L~~~g~~i~ivSn~~~~~---~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGD 250 (287)
+..++++.+++.++..+++......+ ...++..|+. .+-.+.+...-.-+.......++++|++......+.|
T Consensus 15 d~~~l~~~~~~~~id~vi~g~E~~l~~~~~d~l~~~Gi~----~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~~~ 90 (379)
T PRK13790 15 DHQAILDFAKQQNVDWVVIGPEQPLIDGLADILRANGFK----VFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVER 90 (379)
T ss_pred CHHHHHHHHHHhCCCEEEECCcHHHHHHHHHHHHhCCCc----EECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEECC
Confidence 44556666666666555554332212 2334444432 0000101111112334455667777776666666655
Q ss_pred CchhhHHHHHHcCceEEEECCC---------CCCHHHHHHHh
Q 023114 251 DRRNDVWGARDAGCDAWLWGSD---------VHSFKEVAQRI 283 (287)
Q Consensus 251 s~~~Di~~a~~aG~~~i~v~~~---------~~~~~el~~~l 283 (287)
...-...+...|.+.+.=..+ +++.+|+.+.+
T Consensus 91 -~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~ 131 (379)
T PRK13790 91 -KKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAI 131 (379)
T ss_pred -HHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHH
Confidence 233334455566665443322 46666665543
No 381
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=32.02 E-value=1.4e+02 Score=26.04 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHcCCCCCCEE--EEcCC-chhhHHHHHHcCceEEEECCCC---CCHHHHHH
Q 023114 225 KPNPTIFLKACDLLGVKPEDAV--HVGDD-RRNDVWGARDAGCDAWLWGSDV---HSFKEVAQ 281 (287)
Q Consensus 225 KP~~~~~~~~~~~l~~~p~~~l--~VGDs-~~~Di~~a~~aG~~~i~v~~~~---~~~~el~~ 281 (287)
.|..+.+..+.+..+++ ++ .+|.= .+.|+..+.++|+..++|++++ .+.++..+
T Consensus 183 ~~~~elLkei~~~~~iP---VV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~ak 242 (287)
T TIGR00343 183 RVPVELLLEVLKLGKLP---VVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAK 242 (287)
T ss_pred CCCHHHHHHHHHhCCCC---EEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHH
Confidence 47888899988876653 55 77842 3899999999999999999975 34555443
No 382
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=31.77 E-value=85 Score=23.20 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=9.5
Q ss_pred HHHHHHHHHcCCeEEEEeC
Q 023114 176 EKVFKAIRKAGVKLAVVSN 194 (287)
Q Consensus 176 ~~ll~~L~~~g~~i~ivSn 194 (287)
.++++...+.+..++.+|.
T Consensus 40 e~~~~~a~~~~~d~V~iS~ 58 (122)
T cd02071 40 EEIVEAAIQEDVDVIGLSS 58 (122)
T ss_pred HHHHHHHHHcCCCEEEEcc
Confidence 3455555555555555554
No 383
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=31.71 E-value=26 Score=24.14 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=12.5
Q ss_pred eEEEEeCCCCccCCC
Q 023114 75 KALLVDAAGTLLVPS 89 (287)
Q Consensus 75 k~vifD~DGTLid~~ 89 (287)
-.|+++-|||.++++
T Consensus 43 ~~lvL~eDGT~VddE 57 (80)
T cd06536 43 ITLVLAEDGTIVEDE 57 (80)
T ss_pred eEEEEecCCcEEccH
Confidence 468899999999854
No 384
>COG3655 Predicted transcriptional regulator [Transcription]
Probab=31.62 E-value=59 Score=21.94 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEcCC
Q 023114 227 NPTIFLKACDLLGVKPEDAVHVGDD 251 (287)
Q Consensus 227 ~~~~~~~~~~~l~~~p~~~l~VGDs 251 (287)
....+..+|+.|.++|.+.+-+.++
T Consensus 44 ~~~tL~~iC~~LeCqpgDiley~~d 68 (73)
T COG3655 44 RLSTLEKICKALECQPGDILEYVPD 68 (73)
T ss_pred eHHHHHHHHHHcCCChhheeEEecC
Confidence 3568899999999999999988654
No 385
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=31.58 E-value=2.3e+02 Score=25.57 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=41.8
Q ss_pred EEEeCCCcchHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCc-hhhHHHHHHcCceEEE
Q 023114 190 AVVSNFDTRLRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDR-RNDVWGARDAGCDAWL 268 (287)
Q Consensus 190 ~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~-~~Di~~a~~aG~~~i~ 268 (287)
++=+|....+-+.+...|+. ||+.-..| ...+...|++|+++++-|-.. ..++..|.+.|+ .+.
T Consensus 33 AvKaN~~~~il~~l~~~G~g--~DvaS~~E------------l~~al~~G~~~~~Ii~~gp~K~~~~L~~ai~~gv-~i~ 97 (379)
T cd06836 33 AVKANPLVPVLRLLAEAGAG--AEVASPGE------------LELALAAGFPPERIVFDSPAKTRAELREALELGV-AIN 97 (379)
T ss_pred EEecCCCHHHHHHHHHcCCc--EEEcCHHH------------HHHHHHcCCChhhEEEeCCCCCHHHHHHHHHCCC-EEE
Confidence 44456555567777777653 44332111 233445688888888777521 467888888887 344
Q ss_pred ECCCCCCHHHHHHH
Q 023114 269 WGSDVHSFKEVAQR 282 (287)
Q Consensus 269 v~~~~~~~~el~~~ 282 (287)
+ +|+.||..+
T Consensus 98 i----DS~~El~~i 107 (379)
T cd06836 98 I----DNFQELERI 107 (379)
T ss_pred E----CCHHHHHHH
Confidence 3 345554443
No 386
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=31.51 E-value=2.5e+02 Score=23.17 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEcCC-chhhHHHHHHcC-ceEEEECCC
Q 023114 224 EKPNPTIFLKACDLLGVKPEDAVHVGDD-RRNDVWGARDAG-CDAWLWGSD 272 (287)
Q Consensus 224 ~KP~~~~~~~~~~~l~~~p~~~l~VGDs-~~~Di~~a~~aG-~~~i~v~~~ 272 (287)
.-|+.+.+..+.+..++ .+++-|+= ...|+..+...| +..+++++.
T Consensus 175 ~G~d~~~i~~l~~~~~i---pvia~GGi~~~~di~~~~~~g~~~gv~vg~a 222 (233)
T PRK00748 175 SGPNVEATRELAAAVPI---PVIASGGVSSLDDIKALKGLGAVEGVIVGRA 222 (233)
T ss_pred CCCCHHHHHHHHHhCCC---CEEEeCCCCCHHHHHHHHHcCCccEEEEEHH
Confidence 33888999999888764 37887741 157999999988 999999874
No 387
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=31.50 E-value=3.2e+02 Score=23.07 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEc--CCchhhHHHHHHcC-ceEEEECC----CCCCHHHHHHHh
Q 023114 223 AEKPNPTIFLKACDLLGVKPEDAVHVG--DDRRNDVWGARDAG-CDAWLWGS----DVHSFKEVAQRI 283 (287)
Q Consensus 223 ~~KP~~~~~~~~~~~l~~~p~~~l~VG--Ds~~~Di~~a~~aG-~~~i~v~~----~~~~~~el~~~l 283 (287)
...|+.+.+..+.+..++ .+++.| .| ..|+..+...| +..+++++ +.-+++++.+.+
T Consensus 183 ~~g~~~~~~~~i~~~~~i---pvia~GGi~s-~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~ 246 (254)
T TIGR00735 183 KSGYDLELTKAVSEAVKI---PVIASGGAGK-PEHFYEAFTKGKADAALAASVFHYREITIGEVKEYL 246 (254)
T ss_pred CCCCCHHHHHHHHHhCCC---CEEEeCCCCC-HHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHH
Confidence 455777888888887654 488999 44 67898888888 88887754 355666665443
No 388
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=31.42 E-value=88 Score=27.97 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=45.1
Q ss_pred HHHc-CCeEEE-EeCCC--cch-HHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHc-CCCCCCEEEEcCCchhh
Q 023114 182 IRKA-GVKLAV-VSNFD--TRL-RPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLL-GVKPEDAVHVGDDRRND 255 (287)
Q Consensus 182 L~~~-g~~i~i-vSn~~--~~~-~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l-~~~p~~~l~VGDs~~~D 255 (287)
|++. ++.+.+ +|+.- ... ..+.+.+++ ...+..+..+.....+--..++..+.+.+ ..+|+-+++.||+ ..=
T Consensus 3 l~~~~~~~~~li~tG~H~~~~~g~~~~~~f~i-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~-~~~ 80 (346)
T PF02350_consen 3 LQKDPGFELILIVTGQHLDPEMGDTFFEGFGI-PKPDYLLDSDSQSMAKSTGLAIIELADVLEREKPDAVLVLGDR-NEA 80 (346)
T ss_dssp HHCSTTEEEEEEEECSS--CHHHHHHHHHTT---SEEEE--STTS-HHHHHHHHHHHHHHHHHHHT-SEEEEETTS-HHH
T ss_pred hhhCCCCCEEEEEeCCCCCHHHHHHHHhhCCC-CCCCcccccccchHHHHHHHHHHHHHHHHHhcCCCEEEEEcCC-chH
Confidence 4444 555544 55543 334 666677777 56777777554222221112222222222 2478999999996 543
Q ss_pred HH---HHHHcCceEEEECCC
Q 023114 256 VW---GARDAGCDAWLWGSD 272 (287)
Q Consensus 256 i~---~a~~aG~~~i~v~~~ 272 (287)
+. +|...+++.+++..|
T Consensus 81 la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 81 LAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHTT-EEEEES--
T ss_pred HHHHHHHHHhCCCEEEecCC
Confidence 43 566779999999877
No 389
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=31.35 E-value=3.7e+02 Score=23.79 Aligned_cols=92 Identities=24% Similarity=0.206 Sum_probs=52.2
Q ss_pred ccHHHHHHHHHHcC--CeEEEEeCCC-cchHHHHHhcCCcCccceEEec----------ccCCCCCCCHHHHHHHHHHc-
Q 023114 173 PEAEKVFKAIRKAG--VKLAVVSNFD-TRLRPVLRALNCDHWFDAVAVS----------AEVEAEKPNPTIFLKACDLL- 238 (287)
Q Consensus 173 pg~~~ll~~L~~~g--~~i~ivSn~~-~~~~~~l~~~gl~~~f~~~~~~----------~~~~~~KP~~~~~~~~~~~l- 238 (287)
+...+.++.+++++ .++.+ .|.. .+.-..+...|. |.+..+ ...+...|....+..+.+..
T Consensus 120 ~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGa----D~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~ 194 (325)
T cd00381 120 VYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGA----DGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAAR 194 (325)
T ss_pred HHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCC----CEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHh
Confidence 45678899998875 44443 3332 233444555565 333321 11123556666655555443
Q ss_pred --CCCCCCEEEEcCC-chhhHHHHHHcCceEEEECCC
Q 023114 239 --GVKPEDAVHVGDD-RRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 239 --~~~p~~~l~VGDs-~~~Di~~a~~aG~~~i~v~~~ 272 (287)
+++ ++.=|.= ...|+..+..+|...+++++-
T Consensus 195 ~~~vp---VIA~GGI~~~~di~kAla~GA~~VmiGt~ 228 (325)
T cd00381 195 DYGVP---VIADGGIRTSGDIVKALAAGADAVMLGSL 228 (325)
T ss_pred hcCCc---EEecCCCCCHHHHHHHHHcCCCEEEecch
Confidence 332 4443331 157899999999999999764
No 390
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=30.62 E-value=2.5e+02 Score=23.10 Aligned_cols=46 Identities=15% Similarity=0.312 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEcCCc-hhhHHHHHHcCceEEEECCC
Q 023114 224 EKPNPTIFLKACDLLGVKPEDAVHVGDDR-RNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 224 ~KP~~~~~~~~~~~l~~~p~~~l~VGDs~-~~Di~~a~~aG~~~i~v~~~ 272 (287)
.-|+.+.+..+.+..+++ +++-|+=. .+|+..+...|+..+++++.
T Consensus 175 ~g~~~~~i~~i~~~~~ip---vi~~GGi~~~~di~~~~~~Ga~gv~vg~~ 221 (234)
T cd04732 175 SGPNFELYKELAAATGIP---VIASGGVSSLDDIKALKELGVAGVIVGKA 221 (234)
T ss_pred CCCCHHHHHHHHHhcCCC---EEEecCCCCHHHHHHHHHCCCCEEEEeHH
Confidence 337788888888877653 77778521 47899999999999999874
No 391
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=30.44 E-value=2.2e+02 Score=20.90 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=55.0
Q ss_pred HHHHHHHcCCeEEEEeCC-Ccc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEc-CCchh
Q 023114 178 VFKAIRKAGVKLAVVSNF-DTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVG-DDRRN 254 (287)
Q Consensus 178 ll~~L~~~g~~i~ivSn~-~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VG-Ds~~~ 254 (287)
+-..++.+|+.+.-.-.. +.+ +.......+ -+.+..+.......+...-+...+++.+.+ .-.+++| --...
T Consensus 19 ~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~----~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~-~i~i~~GG~~~~~ 93 (122)
T cd02071 19 IARALRDAGFEVIYTGLRQTPEEIVEAAIQED----VDVIGLSSLSGGHMTLFPEVIELLRELGAG-DILVVGGGIIPPE 93 (122)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC----CCEEEEcccchhhHHHHHHHHHHHHhcCCC-CCEEEEECCCCHH
Confidence 334578889887665532 222 333333332 366666654444554444555555555543 3346666 32344
Q ss_pred hHHHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 255 DVWGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 255 Di~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
+++..+++|+..+.-.+ .+.+++...+
T Consensus 94 ~~~~~~~~G~d~~~~~~--~~~~~~~~~~ 120 (122)
T cd02071 94 DYELLKEMGVAEIFGPG--TSIEEIIDKI 120 (122)
T ss_pred HHHHHHHCCCCEEECCC--CCHHHHHHHH
Confidence 57788899988765333 4666665554
No 392
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=30.27 E-value=1.4e+02 Score=21.51 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=25.7
Q ss_pred HHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCc
Q 023114 177 KVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCD 209 (287)
Q Consensus 177 ~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~ 209 (287)
+...++++.|+++++|+-++.. +....+..++.
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p 37 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFP 37 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCC
Confidence 4567888899999999988774 77777776654
No 393
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=30.21 E-value=71 Score=27.83 Aligned_cols=49 Identities=29% Similarity=0.342 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHH------HHcCceEEEECC
Q 023114 222 EAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGA------RDAGCDAWLWGS 271 (287)
Q Consensus 222 ~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a------~~aG~~~i~v~~ 271 (287)
...-|.++.|..+++++|++.+++|+|=|+ .+...++ +.+|..-+.+-+
T Consensus 69 ~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd-~~~~~A~ra~W~l~~~Gh~~V~iLd 123 (285)
T COG2897 69 PHMLPSPEQFAKLLGELGIRNDDTVVVYDD-GGGFFAARAWWLLRYLGHENVRILD 123 (285)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEECC-CCCeehHHHHHHHHHcCCCceEEec
Confidence 456788899999999999988888888775 6665554 456776655543
No 394
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=30.05 E-value=28 Score=23.85 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=12.5
Q ss_pred eEEEEeCCCCccCCC
Q 023114 75 KALLVDAAGTLLVPS 89 (287)
Q Consensus 75 k~vifD~DGTLid~~ 89 (287)
-.|+++-|||.++++
T Consensus 40 ~~lvL~eDGT~Vd~E 54 (79)
T cd06538 40 SSLVLDEDGTGVDTE 54 (79)
T ss_pred cEEEEecCCcEEccH
Confidence 458999999999854
No 395
>PRK04940 hypothetical protein; Provisional
Probab=29.94 E-value=2.3e+02 Score=22.86 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=35.9
Q ss_pred CCEEEEcCCchhhHHHH---HHcCceEEEECCCCCCHHHHHHHhCcC
Q 023114 243 EDAVHVGDDRRNDVWGA---RDAGCDAWLWGSDVHSFKEVAQRIGVK 286 (287)
Q Consensus 243 ~~~l~VGDs~~~Di~~a---~~aG~~~i~v~~~~~~~~el~~~l~~~ 286 (287)
+.++.||-| .-+..+- ...|+++|+++..++..+.+.+.+|.+
T Consensus 60 ~~~~liGSS-LGGyyA~~La~~~g~~aVLiNPAv~P~~~L~~~ig~~ 105 (180)
T PRK04940 60 ERPLICGVG-LGGYWAERIGFLCGIRQVIFNPNLFPEENMEGKIDRP 105 (180)
T ss_pred CCcEEEEeC-hHHHHHHHHHHHHCCCEEEECCCCChHHHHHHHhCCC
Confidence 458999998 7776655 789999999999999999888888753
No 396
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=29.80 E-value=1.5e+02 Score=21.95 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=42.5
Q ss_pred ccHHHHHHH-HHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEeccc-CCCCCCCHHHHHHHHHH
Q 023114 173 PEAEKVFKA-IRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAE-VEAEKPNPTIFLKACDL 237 (287)
Q Consensus 173 pg~~~ll~~-L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~-~~~~KP~~~~~~~~~~~ 237 (287)
.++++.++. +.+.++-|.++|..... +...++... ..+..++.-.+ .....|..+....-+++
T Consensus 46 eei~~~~~~~l~~~digIIlIte~~a~~i~~~I~~~~--~~~PaIieIP~k~~~y~~~~d~i~~~~~~ 111 (115)
T TIGR01101 46 SEIEDCFNRFLKRDDIAIILINQHIAEMIRHAVDAHT--RSIPAVLEIPSKDHPYDASKDSILRRARG 111 (115)
T ss_pred HHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHHHhcC--CcCCEEEEECCCCCCCCCcccHHHHHHHH
Confidence 467778888 66778899999987655 677777755 55666666555 34566666666655554
No 397
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=29.74 E-value=69 Score=26.84 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCc
Q 023114 175 AEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCD 209 (287)
Q Consensus 175 ~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~ 209 (287)
+.+.+..|++.|++|++||+.... ....-+.+|+.
T Consensus 28 A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~ 63 (274)
T COG3769 28 AAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQ 63 (274)
T ss_pred cchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Confidence 456778899999999999998766 56666666664
No 398
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=29.30 E-value=4e+02 Score=23.51 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEcCC-chhhHHHHHH-cCceEEEECCC
Q 023114 224 EKPNPTIFLKACDLLGVKPEDAVHVGDD-RRNDVWGARD-AGCDAWLWGSD 272 (287)
Q Consensus 224 ~KP~~~~~~~~~~~l~~~p~~~l~VGDs-~~~Di~~a~~-aG~~~i~v~~~ 272 (287)
++++-+.+..+.+..+++ ++..||= ...|+....+ .|+..|+++++
T Consensus 179 G~a~~~~i~~ik~~~~iP---VI~nGgI~s~~da~~~l~~~gadgVmiGR~ 226 (321)
T PRK10415 179 GEAEYDSIRAVKQKVSIP---VIANGDITDPLKARAVLDYTGADALMIGRA 226 (321)
T ss_pred CCcChHHHHHHHHhcCCc---EEEeCCCCCHHHHHHHHhccCCCEEEEChH
Confidence 455666677777777663 8999982 1445555554 79999999976
No 399
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=29.20 E-value=75 Score=26.34 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.0
Q ss_pred CCcc-HHHHHHHHHHcCCeEEEEeCCC
Q 023114 171 CDPE-AEKVFKAIRKAGVKLAVVSNFD 196 (287)
Q Consensus 171 ~~pg-~~~ll~~L~~~g~~i~ivSn~~ 196 (287)
+.|+ +.++++.+++.|+++.+.||+.
T Consensus 78 l~~~~~~~li~~~~~~g~~~~i~TNG~ 104 (235)
T TIGR02493 78 LQPEFLSELFKACKELGIHTCLDTSGF 104 (235)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 4577 4589999999999999999994
No 400
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=29.12 E-value=2.6e+02 Score=21.36 Aligned_cols=55 Identities=7% Similarity=-0.013 Sum_probs=32.9
Q ss_pred HHHHHHHHHHcC--CCCCCEEEEcCCchhhHHHHHH---cCceEEEECCCCCCHHHHHHH
Q 023114 228 PTIFLKACDLLG--VKPEDAVHVGDDRRNDVWGARD---AGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 228 ~~~~~~~~~~l~--~~p~~~l~VGDs~~~Di~~a~~---aG~~~i~v~~~~~~~~el~~~ 282 (287)
+.....+++++| ++..++++||-|....-..+.. .|+.+..+.....++++....
T Consensus 12 ~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ 71 (140)
T cd05212 12 AKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHD 71 (140)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhh
Confidence 455666667665 4556788888775555444433 366766666555566665433
No 401
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=29.12 E-value=3.9e+02 Score=24.33 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=18.7
Q ss_pred HHHcCCCCCCEEEEcC--CchhhHHHHHHcCceEEEE
Q 023114 235 CDLLGVKPEDAVHVGD--DRRNDVWGARDAGCDAWLW 269 (287)
Q Consensus 235 ~~~l~~~p~~~l~VGD--s~~~Di~~a~~aG~~~i~v 269 (287)
+.+.|++++++++-|- + ..++..+.+.|+..+.+
T Consensus 87 ~~~~G~~~~~I~~~gp~k~-~~~l~~a~~~gi~~i~i 122 (417)
T TIGR01048 87 ALAAGFPPEKIVFNGNGKS-RAELERALELGIRCINV 122 (417)
T ss_pred HHHcCCCcceEEEeCCCCC-HHHHHHHHHcCCCEEEe
Confidence 3345666555555443 3 56666666666654443
No 402
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.05 E-value=3.5e+02 Score=22.80 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEcC-CchhhHHHHHHc-----C-ceEEEECC----CCCCHHHHHHH
Q 023114 223 AEKPNPTIFLKACDLLGVKPEDAVHVGD-DRRNDVWGARDA-----G-CDAWLWGS----DVHSFKEVAQR 282 (287)
Q Consensus 223 ~~KP~~~~~~~~~~~l~~~p~~~l~VGD-s~~~Di~~a~~a-----G-~~~i~v~~----~~~~~~el~~~ 282 (287)
..=|+.+.+..+++..++ .+++=|- +...|+..+..+ | +..+.++. +.-+++|+...
T Consensus 172 ~~G~d~el~~~l~~~~~~---pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~i~~~e~~~~ 239 (241)
T PRK14114 172 LQEHDFSLTRKIAIEAEV---KVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLEGILTVEVMKRY 239 (241)
T ss_pred CCCcCHHHHHHHHHHCCC---CEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHCCCCCHHHHHHh
Confidence 344999999999888654 3565553 115789888886 5 88888765 35566665543
No 403
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=29.05 E-value=4.1e+02 Score=23.53 Aligned_cols=82 Identities=18% Similarity=0.278 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc--hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcC
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR--LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGD 250 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~--~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGD 250 (287)
|-=.++++++++.|.+|-++|.++-. +...+..-| +|.+++.- +-|..=+--.+++-+|-...--+.. .
T Consensus 167 pRH~~lI~eiR~~Gari~Li~DGDVa~ai~~~~~~s~----vD~~~GiG----GaPEGVlaAaAlkclGG~mqgRL~~-~ 237 (319)
T PRK09479 167 PRHEELIAEIREAGARVKLISDGDVAGAIATAFPDTG----VDILMGIG----GAPEGVLAAAALKCLGGEMQGRLLP-R 237 (319)
T ss_pred chHHHHHHHHHHcCCeEEEeccccHHHHHHHhcCCCC----eeEEEEcC----cChHHHHHHHHHHhcCceeEEeECC-C
Confidence 66678999999999999999998754 233323222 34444432 3333333344445555433322322 2
Q ss_pred CchhhHHHHHHcCc
Q 023114 251 DRRNDVWGARDAGC 264 (287)
Q Consensus 251 s~~~Di~~a~~aG~ 264 (287)
+ ..+.+.++..|+
T Consensus 238 ~-~~e~~r~~~~Gi 250 (319)
T PRK09479 238 N-EEERARAKKMGI 250 (319)
T ss_pred C-HHHHHHHHHcCC
Confidence 2 455666666666
No 404
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=29.00 E-value=2.3e+02 Score=24.82 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEE--EEcCC-chhhHHHHHHcCceEEEECCCC---CCHHHHHH
Q 023114 224 EKPNPTIFLKACDLLGVKPEDAV--HVGDD-RRNDVWGARDAGCDAWLWGSDV---HSFKEVAQ 281 (287)
Q Consensus 224 ~KP~~~~~~~~~~~l~~~p~~~l--~VGDs-~~~Di~~a~~aG~~~i~v~~~~---~~~~el~~ 281 (287)
..|..+.+..+.+..+++ ++ .+|.= .+.|+..+.++|+..++|++.+ .+.++..+
T Consensus 188 ~~~~~elL~ei~~~~~iP---VV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~ak 248 (293)
T PRK04180 188 LQAPYELVKEVAELGRLP---VVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRAR 248 (293)
T ss_pred cCCCHHHHHHHHHhCCCC---EEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHH
Confidence 457888899999887764 55 78852 3899999999999999999985 45554443
No 405
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=29.00 E-value=4.2e+02 Score=23.66 Aligned_cols=88 Identities=10% Similarity=0.146 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEEecccCCCCCCCHHHHH---------HHHHHcCCCCCCE
Q 023114 175 AEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFL---------KACDLLGVKPEDA 245 (287)
Q Consensus 175 ~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~---------~~~~~l~~~p~~~ 245 (287)
.+.++.+|.+.|+.+.|.+=....+..+|+..|++ .+..+..... +...... ..++ ..+|+ +
T Consensus 16 Fk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~----y~~iG~~g~~--~~~Kl~~~~~R~~~l~~~~~--~~~pD-v 86 (335)
T PF04007_consen 16 FKNIIRELEKRGHEVLITARDKDETEELLDLYGID----YIVIGKHGDS--LYGKLLESIERQYKLLKLIK--KFKPD-V 86 (335)
T ss_pred HHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCC----eEEEcCCCCC--HHHHHHHHHHHHHHHHHHHH--hhCCC-E
Confidence 35688899999998887665545578999998864 4444332211 1111111 1122 23554 3
Q ss_pred EEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 246 VHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 246 l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
++-..| ..=...|...|.++|.+.+.
T Consensus 87 ~is~~s-~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 87 AISFGS-PEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred EEecCc-HHHHHHHHHhCCCeEEEecC
Confidence 333334 44455889999999888764
No 406
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=28.88 E-value=2.2e+02 Score=24.76 Aligned_cols=46 Identities=17% Similarity=0.158 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHcCCCCCCEE--EEcCC-chhhHHHHHHcCceEEEECCCC
Q 023114 225 KPNPTIFLKACDLLGVKPEDAV--HVGDD-RRNDVWGARDAGCDAWLWGSDV 273 (287)
Q Consensus 225 KP~~~~~~~~~~~l~~~p~~~l--~VGDs-~~~Di~~a~~aG~~~i~v~~~~ 273 (287)
.|..+.+..+.+..+++ ++ .+|.= .+.|+..+..+|+..++|++..
T Consensus 180 ~~d~elLk~l~~~~~iP---VV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI 228 (283)
T cd04727 180 QAPYELVKETAKLGRLP---VVNFAAGGVATPADAALMMQLGADGVFVGSGI 228 (283)
T ss_pred CCCHHHHHHHHHhcCCC---eEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHh
Confidence 57888899998887764 54 78842 3899999999999999999875
No 407
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=28.86 E-value=36 Score=20.48 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCeEEEEeCCCcc-hHHHHHh
Q 023114 176 EKVFKAIRKAGVKLAVVSNFDTR-LRPVLRA 205 (287)
Q Consensus 176 ~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~ 205 (287)
.++.+.|++.|++.+=||...+. ..+.|..
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~ 39 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKLRK 39 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHHHH
Confidence 47888899999999999988877 4666654
No 408
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=28.86 E-value=52 Score=30.66 Aligned_cols=18 Identities=17% Similarity=-0.051 Sum_probs=12.1
Q ss_pred CeeEEEEeCCCCccCCCc
Q 023114 73 THKALLVDAAGTLLVPSQ 90 (287)
Q Consensus 73 ~~k~vifD~DGTLid~~~ 90 (287)
.+++|=||||-||+.-..
T Consensus 11 ~i~~iGFDmDyTLa~Y~~ 28 (448)
T PF05761_consen 11 DIDVIGFDMDYTLARYKS 28 (448)
T ss_dssp C--EEEE-TBTTTBEE-C
T ss_pred cCCEEEECcccchhhcCH
Confidence 579999999999997544
No 409
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=28.74 E-value=1e+02 Score=21.04 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=26.0
Q ss_pred HHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccc
Q 023114 176 EKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFD 213 (287)
Q Consensus 176 ~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~ 213 (287)
.++.++++++|..+. +++.+..+...++..|+.+.|.
T Consensus 60 ~~l~~~~~~~g~~v~-i~~~~~~~~~~l~~~gl~~~~~ 96 (99)
T cd07043 60 LGAYKRARAAGGRLV-LVNVSPAVRRVLELTGLDRLFP 96 (99)
T ss_pred HHHHHHHHHcCCeEE-EEcCCHHHHHHHHHhCcceeee
Confidence 356667778887654 4555567889999999876553
No 410
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=28.73 E-value=2.8e+02 Score=22.59 Aligned_cols=104 Identities=14% Similarity=0.171 Sum_probs=53.9
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEEecc--cCCCCCCCHHHHHHHHHHcCCCCCCEEEEc-
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSA--EVEAEKPNPTIFLKACDLLGVKPEDAVHVG- 249 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~--~~~~~KP~~~~~~~~~~~l~~~p~~~l~VG- 249 (287)
.-..++++++++++ .+...--++-+=......+|++ ++...+.+. +.....|+-+.+..+.+. +++ ++.=|
T Consensus 79 ~~l~~li~~i~~~~-~l~MADist~ee~~~A~~~G~D-~I~TTLsGYT~~t~~~~pD~~lv~~l~~~-~~p---vIaEGr 152 (192)
T PF04131_consen 79 ETLEELIREIKEKY-QLVMADISTLEEAINAAELGFD-IIGTTLSGYTPYTKGDGPDFELVRELVQA-DVP---VIAEGR 152 (192)
T ss_dssp S-HHHHHHHHHHCT-SEEEEE-SSHHHHHHHHHTT-S-EEE-TTTTSSTTSTTSSHHHHHHHHHHHT-TSE---EEEESS
T ss_pred cCHHHHHHHHHHhC-cEEeeecCCHHHHHHHHHcCCC-EEEcccccCCCCCCCCCCCHHHHHHHHhC-CCc---EeecCC
Confidence 55778999999986 3333222222223334556642 122222222 111144555666666654 432 33322
Q ss_pred -CCchhhHHHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 250 -DDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 250 -Ds~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
.+ +.+...+.++|..++.||+.+...+++.+.+
T Consensus 153 i~t-pe~a~~al~~GA~aVVVGsAITrP~~It~~F 186 (192)
T PF04131_consen 153 IHT-PEQAAKALELGAHAVVVGSAITRPQEITKRF 186 (192)
T ss_dssp --S-HHHHHHHHHTT-SEEEE-HHHH-HHHHHHHH
T ss_pred CCC-HHHHHHHHhcCCeEEEECcccCCHHHHHHHH
Confidence 23 5677888899999999999887777776654
No 411
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=28.59 E-value=69 Score=21.44 Aligned_cols=22 Identities=9% Similarity=0.273 Sum_probs=19.8
Q ss_pred CccHHHHHHHHHHcCCeEEEEe
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVS 193 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivS 193 (287)
.+++.++++.++++|.+++.+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 3778999999999999999988
No 412
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=28.46 E-value=75 Score=25.13 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=23.5
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR 198 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~ 198 (287)
.+++.+.++.++++|.+++.+|+....
T Consensus 114 t~~~i~~~~~ak~~Ga~vI~IT~~~~s 140 (177)
T cd05006 114 SPNVLKALEAAKERGMKTIALTGRDGG 140 (177)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 478999999999999999999987544
No 413
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=28.38 E-value=4e+02 Score=23.22 Aligned_cols=105 Identities=9% Similarity=0.108 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCC-CC---CHHHHHHHHHHcCCCCCCEEEE
Q 023114 174 EAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAE-KP---NPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 174 g~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~-KP---~~~~~~~~~~~l~~~p~~~l~V 248 (287)
..+++|+..+++||-+.-+.-.+.+ ++.+++...-.. -..++...+.... -+ -..+...++++.+++- +++.
T Consensus 5 ~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~-sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPV--alHL 81 (286)
T PRK12738 5 STKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMR-SPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPL--ALHL 81 (286)
T ss_pred cHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHC-CCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCE--EEEC
Confidence 3678888888888877666544433 555555432211 1333332221111 11 1223455667776642 3433
Q ss_pred --cCCchhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 249 --GDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 249 --GDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
|.+ ...+..|-++|+.+||+.....+++|-..+
T Consensus 82 DHg~~-~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~ 116 (286)
T PRK12738 82 DHHES-LDDIRRKVHAGVRSAMIDGSHFPFAENVKL 116 (286)
T ss_pred CCCCC-HHHHHHHHHcCCCeEeecCCCCCHHHHHHH
Confidence 233 556777889999999999887777765443
No 414
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=28.32 E-value=1.9e+02 Score=22.91 Aligned_cols=59 Identities=22% Similarity=0.219 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHc---CceEEEECCC------CCCHHHHHHHhCcC
Q 023114 227 NPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDA---GCDAWLWGSD------VHSFKEVAQRIGVK 286 (287)
Q Consensus 227 ~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~a---G~~~i~v~~~------~~~~~el~~~l~~~ 286 (287)
+...+...++.+|.+...+..|+|+ ...|..+-+. ....|.+.+| -...+-+++.+|.+
T Consensus 20 n~~~l~~~L~~~G~~v~~~~~v~Dd-~~~I~~~l~~~~~~~dlVIttGG~G~t~~D~t~ea~~~~~~~~ 87 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVTVVGDD-EDRIAEALRRASERADLVITTGGLGPTHDDLTREAVAKAFGRP 87 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCC-HHHHHHHHHHHHhCCCEEEECCCCCCCCCChHHHHHHHHhCCC
Confidence 3446667788889888888899997 8777666432 4455555544 33344444445443
No 415
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=28.30 E-value=70 Score=27.33 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=23.1
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCC
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFD 196 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~ 196 (287)
-+|+.++++++|+++|+++++..+-.
T Consensus 64 ~Fpdp~~~i~~l~~~g~~~~~~~~P~ 89 (265)
T cd06589 64 KFPNPKSMIDELHDNGVKLVLWIDPY 89 (265)
T ss_pred hCCCHHHHHHHHHHCCCEEEEEeChh
Confidence 47999999999999999999988754
No 416
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=28.06 E-value=1.1e+02 Score=22.40 Aligned_cols=26 Identities=8% Similarity=0.235 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR 198 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~ 198 (287)
++..+.++.++++|.+++++|+....
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 56888899999999999999986555
No 417
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=27.69 E-value=1.2e+02 Score=28.25 Aligned_cols=47 Identities=26% Similarity=0.249 Sum_probs=35.1
Q ss_pred CCCCCEEEEcCCchhh------HHHHHHcCceEEEECCC-----------------------CCCHHHHHHHhCcC
Q 023114 240 VKPEDAVHVGDDRRND------VWGARDAGCDAWLWGSD-----------------------VHSFKEVAQRIGVK 286 (287)
Q Consensus 240 ~~p~~~l~VGDs~~~D------i~~a~~aG~~~i~v~~~-----------------------~~~~~el~~~l~~~ 286 (287)
+...++++|+||-..+ ++|+++||.+-|++... ..+.+|+.+.+|.+
T Consensus 346 v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvriasP~i~~Pc~YGID~pt~~eLIA~~~~~eeI~~~IgaD 421 (470)
T COG0034 346 VKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIASPPIRYPCFYGIDMPTREELIAANRTVEEIRKAIGAD 421 (470)
T ss_pred hCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecCCCccCCCccccCCCCHHHHhhCCCCHHHHHHHhCCC
Confidence 3567899999984443 78999999998877532 44678888877753
No 418
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=27.68 E-value=1.5e+02 Score=27.06 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=55.6
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEc
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVG 249 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VG 249 (287)
-.|++..++..+.+. +++++.|...+. ..+++..++=...|...+.........+. |..-+...+.+.++++.|.
T Consensus 253 kRp~l~~fl~~ls~~-~~l~~ft~s~~~y~~~v~d~l~~~k~~~~~lfr~sc~~~~G~---~ikDis~i~r~l~~viiId 328 (390)
T COG5190 253 KRPELDYFLGKLSKI-HELVYFTASVKRYADPVLDILDSDKVFSHRLFRESCVSYLGV---YIKDISKIGRSLDKVIIID 328 (390)
T ss_pred CChHHHHHHhhhhhh-EEEEEEecchhhhcchHHHhccccceeehhhhcccceeccCc---hhhhHHhhccCCCceEEee
Confidence 358999999999888 899999988766 56666666544445544444433333222 4555666678888999999
Q ss_pred CCchhh
Q 023114 250 DDRRND 255 (287)
Q Consensus 250 Ds~~~D 255 (287)
++....
T Consensus 329 ~~p~SY 334 (390)
T COG5190 329 NSPASY 334 (390)
T ss_pred CChhhh
Confidence 985555
No 419
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=27.27 E-value=88 Score=28.76 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=28.3
Q ss_pred CCccHHHHHHHHHHcCCeEEEE-eCCCcc----hHHHHHhcCCc
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVV-SNFDTR----LRPVLRALNCD 209 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~iv-Sn~~~~----~~~~l~~~gl~ 209 (287)
.+|.+.++++.+++.|++++|. ||+... ....+...|++
T Consensus 87 ~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld 130 (404)
T TIGR03278 87 CYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVR 130 (404)
T ss_pred cCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCC
Confidence 5689999999999999999995 996422 33444444553
No 420
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=27.10 E-value=4.2e+02 Score=23.09 Aligned_cols=104 Identities=17% Similarity=0.201 Sum_probs=63.7
Q ss_pred ccHHHHHHHHHHcCCeEEEEe-CCCcchHHHHHhcCCcCccceEEecccCCC-----CCCCHHHHHHHHHHcCCCCCCEE
Q 023114 173 PEAEKVFKAIRKAGVKLAVVS-NFDTRLRPVLRALNCDHWFDAVAVSAEVEA-----EKPNPTIFLKACDLLGVKPEDAV 246 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivS-n~~~~~~~~l~~~gl~~~f~~~~~~~~~~~-----~KP~~~~~~~~~~~l~~~p~~~l 246 (287)
...+++|+..+++||-+.-+- |..+.+..+++...=.. -..++...+... .+--..+...++++++++. ++
T Consensus 4 v~~~~ll~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~-sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV--~l 80 (286)
T COG0191 4 VSMKELLDKAKENGYAVPAFNINNLETLQAILEAAEEEK-SPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPV--AL 80 (286)
T ss_pred ccHHHHHHHHHHcCCceeeeeecCHHHHHHHHHHHHHhC-CCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCE--EE
Confidence 345888999999888776543 44444555555432111 123333322211 1222334567778888653 45
Q ss_pred EE--cCCchhhHHHHHHcCceEEEECCCCCCHHHHH
Q 023114 247 HV--GDDRRNDVWGARDAGCDAWLWGSDVHSFKEVA 280 (287)
Q Consensus 247 ~V--GDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~ 280 (287)
+- |+| ..++..+-++|+.++|+.....+++|--
T Consensus 81 HlDHg~~-~~~~~~ai~~GFsSvMiDgS~~~~eENi 115 (286)
T COG0191 81 HLDHGAS-FEDCKQAIRAGFSSVMIDGSHLPFEENI 115 (286)
T ss_pred ECCCCCC-HHHHHHHHhcCCceEEecCCcCCHHHHH
Confidence 54 455 8899999999999999999766666643
No 421
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=27.09 E-value=4.2e+02 Score=22.99 Aligned_cols=104 Identities=12% Similarity=0.093 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCC-CCC----CHHHHHHHHHHcC-CCCCCEEE
Q 023114 175 AEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEA-EKP----NPTIFLKACDLLG-VKPEDAVH 247 (287)
Q Consensus 175 ~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~-~KP----~~~~~~~~~~~l~-~~p~~~l~ 247 (287)
.+++|+..++++|-|.-+.-.+.+ ++.+++...-.+ ...++....... ..+ -......++++.+ ++ +..
T Consensus 4 ~~~~l~~A~~~~yav~Afn~~n~e~~~avi~aAe~~~-~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vp---v~l 79 (282)
T TIGR01859 4 GKEILQKAKKEGYAVGAFNFNNLEWTQAILEAAEEEN-SPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVP---VAL 79 (282)
T ss_pred HHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHhC-CCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCe---EEE
Confidence 567888888888877765544333 455554432211 233333322111 112 1223355566665 43 333
Q ss_pred EcCCc--hhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 248 VGDDR--RNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 248 VGDs~--~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
=-|++ ...+..+-.+|+.+|++.....+.+|..++
T Consensus 80 hlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~ 116 (282)
T TIGR01859 80 HLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLAL 116 (282)
T ss_pred ECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHH
Confidence 33631 566779999999999999887777766544
No 422
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=26.83 E-value=4.7e+02 Score=24.05 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcchHH-HHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCch
Q 023114 175 AEKVFKAIRKAGVKLAVVSNFDTRLRP-VLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRR 253 (287)
Q Consensus 175 ~~~ll~~L~~~g~~i~ivSn~~~~~~~-~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~ 253 (287)
..+.+..|. .|.....++++...+.. ++.-+.-. |.++..++ ..-+--..+..+++++|++ +.+++++..
T Consensus 68 lE~~~a~LE-g~~~~~afsSGmaAI~~~~l~ll~~G---D~vl~~~~--~YG~t~~~~~~~l~~~gi~---~~~~d~~~~ 138 (396)
T COG0626 68 LEEALAELE-GGEDAFAFSSGMAAISTALLALLKAG---DHVLLPDD--LYGGTYRLFEKILQKFGVE---VTFVDPGDD 138 (396)
T ss_pred HHHHHHHhh-CCCcEEEecCcHHHHHHHHHHhcCCC---CEEEecCC--ccchHHHHHHHHHHhcCeE---EEEECCCCh
Confidence 334455554 34556666777665433 44433322 77777776 3556667888889999984 677887523
Q ss_pred hhHHHHHHc-CceEEEECCCC
Q 023114 254 NDVWGARDA-GCDAWLWGSDV 273 (287)
Q Consensus 254 ~Di~~a~~a-G~~~i~v~~~~ 273 (287)
..+..+... +.+.|++.++.
T Consensus 139 ~~~~~~~~~~~tk~v~lEtPs 159 (396)
T COG0626 139 EALEAAIKEPNTKLVFLETPS 159 (396)
T ss_pred HHHHHHhcccCceEEEEeCCC
Confidence 244444433 67888888763
No 423
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=26.75 E-value=1.9e+02 Score=24.48 Aligned_cols=16 Identities=0% Similarity=-0.180 Sum_probs=7.4
Q ss_pred HHHHH-HcCceEEEECC
Q 023114 256 VWGAR-DAGCDAWLWGS 271 (287)
Q Consensus 256 i~~a~-~aG~~~i~v~~ 271 (287)
+.... ..|+..+.+.+
T Consensus 53 ~~~L~~~~g~d~ivIaC 69 (251)
T TIGR00067 53 LTFLKERHNIKLLVVAC 69 (251)
T ss_pred HHHHHHhCCCCEEEEeC
Confidence 34444 55555544433
No 424
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=26.50 E-value=4e+02 Score=22.56 Aligned_cols=97 Identities=10% Similarity=0.108 Sum_probs=58.5
Q ss_pred HHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHc---CCCCCCEEEEcCCch
Q 023114 178 VFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLL---GVKPEDAVHVGDDRR 253 (287)
Q Consensus 178 ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l---~~~p~~~l~VGDs~~ 253 (287)
+.+.|++-...++..-..+.. +-.++...| ||.++.--|.+.. +......++... |. .-++=|-+...
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g----~D~v~iDlEH~~~--~~~~~~~~~~a~~~~g~--~~~VRv~~~~~ 74 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAGAG----FDWLLIDGEHAPN--DVRTILSQLQALAPYPS--SPVVRPAIGDP 74 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHhcC----CCEEEEeccCCCC--CHHHHHHHHHHHHhcCC--CcEEECCCCCH
Confidence 334455433334443333333 566666666 4666555444432 444554455443 44 22445544446
Q ss_pred hhHHHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 254 NDVWGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 254 ~Di~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
.++..+..+|...|+++. +++.+|+.+.+
T Consensus 75 ~~i~~~Ld~Ga~gIivP~-v~s~e~a~~~v 103 (249)
T TIGR02311 75 VLIKQLLDIGAQTLLVPM-IETAEQAEAAV 103 (249)
T ss_pred HHHHHHhCCCCCEEEecC-cCCHHHHHHHH
Confidence 799999999999999988 89999988765
No 425
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=26.40 E-value=4.6e+02 Score=23.30 Aligned_cols=107 Identities=12% Similarity=0.108 Sum_probs=59.7
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCC-CCCC------CHHHHHHHHHHcCCCCCC
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVE-AEKP------NPTIFLKACDLLGVKPED 244 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~-~~KP------~~~~~~~~~~~l~~~p~~ 244 (287)
-..+++|+..+++||-|.-+.-.+-+ +..+++...-.. -..++...... ..-+ -...+...+++.+.+-.=
T Consensus 10 v~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~-sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV 88 (321)
T PRK07084 10 VNTREMFAKAVKGGYAIPAYNFNNMEQLQAIIQACVETK-SPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIPI 88 (321)
T ss_pred cCHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhC-CCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCcE
Confidence 45789999999999888776644434 566655432211 12333222111 1111 111223445555432222
Q ss_pred EEEE--cCCchhhHHHHHHcCceEEEECCCCCCHHHHHH
Q 023114 245 AVHV--GDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQ 281 (287)
Q Consensus 245 ~l~V--GDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~ 281 (287)
+++. |++ ...+..|-++|+.+||+.....+++|-.+
T Consensus 89 ~lHLDHg~~-~e~i~~ai~~GftSVMiD~S~lp~eeNI~ 126 (321)
T PRK07084 89 VLHLDHGDS-FELCKDCIDSGFSSVMIDGSHLPYEENVA 126 (321)
T ss_pred EEECCCCCC-HHHHHHHHHcCCCEEEeeCCCCCHHHHHH
Confidence 3443 333 66778888999999999987666666543
No 426
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=26.28 E-value=2.1e+02 Score=23.70 Aligned_cols=45 Identities=24% Similarity=0.312 Sum_probs=29.5
Q ss_pred HHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 231 FLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 231 ~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
+..+|++.++ .++|-|+ +.-|.+.|...|+++.+--...+..+++
T Consensus 57 ~~~lc~~~~v----~liINd~----~dlA~~~~AdGVHlGq~D~~~~~ar~~~ 101 (211)
T COG0352 57 LRALCQKYGV----PLIINDR----VDLALAVGADGVHLGQDDMPLAEARELL 101 (211)
T ss_pred HHHHHHHhCC----eEEecCc----HHHHHhCCCCEEEcCCcccchHHHHHhc
Confidence 3455666665 4677774 5557789999999988644455444444
No 427
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=26.27 E-value=91 Score=20.77 Aligned_cols=30 Identities=13% Similarity=0.380 Sum_probs=22.7
Q ss_pred eEEEEeCCCCccCCCccHHHHHHHHHHHhC
Q 023114 75 KALLVDAAGTLLVPSQPMAQIYREIGEKYG 104 (287)
Q Consensus 75 k~vifD~DGTLid~~~~~~~~~~~~~~~~g 104 (287)
+-|++|++|+-.-++.-..+++-.+..++|
T Consensus 18 ~~V~lDF~gv~~~~ssFl~eafg~l~~~~~ 47 (74)
T PF14213_consen 18 EKVVLDFEGVESITSSFLNEAFGQLVREFG 47 (74)
T ss_pred CeEEEECCCcccccHHHHHHHHHHHHHHcC
Confidence 349999999966555566777777777776
No 428
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=25.72 E-value=3.6e+02 Score=21.81 Aligned_cols=84 Identities=12% Similarity=0.018 Sum_probs=44.0
Q ss_pred HHHHHcCCeEEEE-eCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhHH
Q 023114 180 KAIRKAGVKLAVV-SNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVW 257 (287)
Q Consensus 180 ~~L~~~g~~i~iv-Sn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~ 257 (287)
..++.+|+++.-+ ++-+.+ +...++..+ .|.+..+.......+.-.-+...+++.+..++=.++||-. .-.-.
T Consensus 106 ~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~----pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~-~~~~~ 180 (197)
T TIGR02370 106 TMLRANGFDVIDLGRDVPIDTVVEKVKKEK----PLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGA-PVTQD 180 (197)
T ss_pred HHHHhCCcEEEECCCCCCHHHHHHHHHHcC----CCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEECh-hcCHH
Confidence 3445567666633 233322 444444422 4555555544444444445555666666655545677764 44445
Q ss_pred HHHHcCceEEE
Q 023114 258 GARDAGCDAWL 268 (287)
Q Consensus 258 ~a~~aG~~~i~ 268 (287)
-++..|.....
T Consensus 181 ~~~~~gad~~~ 191 (197)
T TIGR02370 181 WADKIGADVYG 191 (197)
T ss_pred HHHHhCCcEEe
Confidence 67777766543
No 429
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=25.71 E-value=1.1e+02 Score=24.23 Aligned_cols=27 Identities=15% Similarity=0.259 Sum_probs=23.4
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR 198 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~ 198 (287)
.+++.++++.++++|.+++.+|+....
T Consensus 88 t~~~i~~~~~ak~~g~~iI~IT~~~~s 114 (179)
T cd05005 88 TSSVVNAAEKAKKAGAKVVLITSNPDS 114 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 467889999999999999999987655
No 430
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=25.70 E-value=3.9e+02 Score=22.25 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=54.2
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEEecccC-CCCCCCHHHHHHHH------HHcCCCCCCE
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAEV-EAEKPNPTIFLKAC------DLLGVKPEDA 245 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~-~~~KP~~~~~~~~~------~~l~~~p~~~ 245 (287)
+...++++.+|+.|.+.+|+=|-.+.+..+...+..-+++- +.+.+.. +-.|=.+..+.++. ++.+. +--
T Consensus 97 ~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~Vl-vMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~--~~~ 173 (223)
T PRK08745 97 RHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVL-VMSVNPGFGGQAFIPSALDKLRAIRKKIDALGK--PIR 173 (223)
T ss_pred ccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEE-EEEECCCCCCccccHHHHHHHHHHHHHHHhcCC--Cee
Confidence 45789999999999999999997666444433333222222 2233322 22222344444332 22232 222
Q ss_pred EEEcCC-chhhHHHHHHcCceEEEECCC
Q 023114 246 VHVGDD-RRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 246 l~VGDs-~~~Di~~a~~aG~~~i~v~~~ 272 (287)
+-|.-. ....+....++|...+.+|+.
T Consensus 174 IeVDGGI~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 174 LEIDGGVKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEEChh
Confidence 444431 134566678899998888876
No 431
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=25.51 E-value=1.9e+02 Score=23.59 Aligned_cols=21 Identities=5% Similarity=0.181 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCCeEEEEeCCC
Q 023114 176 EKVFKAIRKAGVKLAVVSNFD 196 (287)
Q Consensus 176 ~~ll~~L~~~g~~i~ivSn~~ 196 (287)
...++.+...++...|+|+..
T Consensus 32 ~~~l~~l~~~~~d~viftS~~ 52 (231)
T PF02602_consen 32 EAALEQLPPGNYDWVIFTSPN 52 (231)
T ss_dssp HHHHHHHTGCCSSEEEESSHH
T ss_pred HHHHHhcccCCCCEEEEECHH
Confidence 344444444456666666653
No 432
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.47 E-value=85 Score=27.31 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.5
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeC
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSN 194 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn 194 (287)
-||+.++++++|+++|+++++...
T Consensus 72 ~FPdp~~mi~~Lh~~G~k~v~~v~ 95 (292)
T cd06595 72 LFPDPEKLLQDLHDRGLKVTLNLH 95 (292)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEeC
Confidence 479999999999999999998775
No 433
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=25.45 E-value=4.4e+02 Score=22.70 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=27.6
Q ss_pred HHHHHHcCCCCCCEEEEcCC-chhhHHHHHHcCceEEEECCC
Q 023114 232 LKACDLLGVKPEDAVHVGDD-RRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 232 ~~~~~~l~~~p~~~l~VGDs-~~~Di~~a~~aG~~~i~v~~~ 272 (287)
..+.+.+++ .++.+|+= ...|+.....+|+..|.++++
T Consensus 224 ~~i~~~~~i---pii~~GGI~~~~da~~~l~~GAd~V~igra 262 (296)
T cd04740 224 YQVYKAVEI---PIIGVGGIASGEDALEFLMAGASAVQVGTA 262 (296)
T ss_pred HHHHHhcCC---CEEEECCCCCHHHHHHHHHcCCCEEEEchh
Confidence 333444444 48889971 157999999999999999886
No 434
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=25.45 E-value=2.3e+02 Score=19.51 Aligned_cols=100 Identities=19% Similarity=0.244 Sum_probs=56.0
Q ss_pred cHHHHH-HHHHHcCC-eEEEEeCCCcchHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCC
Q 023114 174 EAEKVF-KAIRKAGV-KLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDD 251 (287)
Q Consensus 174 g~~~ll-~~L~~~g~-~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs 251 (287)
...+.+ ..|+..|+ .+..+++. ..+...++... +|.++..-+... ....+.+..+ ++.+ +.-.+++++++
T Consensus 9 ~~~~~l~~~l~~~~~~~v~~~~~~-~~~~~~~~~~~----~d~iiid~~~~~-~~~~~~~~~i-~~~~-~~~~ii~~t~~ 80 (112)
T PF00072_consen 9 EIRELLEKLLERAGYEEVTTASSG-EEALELLKKHP----PDLIIIDLELPD-GDGLELLEQI-RQIN-PSIPIIVVTDE 80 (112)
T ss_dssp HHHHHHHHHHHHTTEEEEEEESSH-HHHHHHHHHST----ESEEEEESSSSS-SBHHHHHHHH-HHHT-TTSEEEEEESS
T ss_pred HHHHHHHHHHHhCCCCEEEEECCH-HHHHHHhcccC----ceEEEEEeeecc-cccccccccc-cccc-ccccEEEecCC
Confidence 334444 33445788 55544443 44444445433 677776654443 2233334444 4445 34467878753
Q ss_pred -chhhHHHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 252 -RRNDVWGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 252 -~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
.......+..+|+..++..+ -+.+++.+.+
T Consensus 81 ~~~~~~~~~~~~g~~~~l~kp--~~~~~l~~~i 111 (112)
T PF00072_consen 81 DDSDEVQEALRAGADDYLSKP--FSPEELRAAI 111 (112)
T ss_dssp TSHHHHHHHHHTTESEEEESS--SSHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCEEEECC--CCHHHHHHhh
Confidence 13477888899988776554 4677776654
No 435
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=25.40 E-value=4.7e+02 Score=24.40 Aligned_cols=34 Identities=9% Similarity=0.135 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHcC-CCCCCEEEEcCCchhhHHHHHH
Q 023114 227 NPTIFLKACDLLG-VKPEDAVHVGDDRRNDVWGARD 261 (287)
Q Consensus 227 ~~~~~~~~~~~l~-~~p~~~l~VGDs~~~Di~~a~~ 261 (287)
+.+....+.+--. ++|.++++|=|+ ..+-.+...
T Consensus 197 de~Lm~El~~Ik~~~~P~E~llVvDa-m~GQdA~~~ 231 (451)
T COG0541 197 DEELMDELKEIKEVINPDETLLVVDA-MIGQDAVNT 231 (451)
T ss_pred cHHHHHHHHHHHhhcCCCeEEEEEec-ccchHHHHH
Confidence 4455555544433 689999999996 777666553
No 436
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=25.37 E-value=90 Score=22.88 Aligned_cols=26 Identities=12% Similarity=0.240 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR 198 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~ 198 (287)
+.+.++++.++++|.+++++|+....
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 56788999999999999999986544
No 437
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=25.36 E-value=3.4e+02 Score=23.00 Aligned_cols=60 Identities=12% Similarity=0.261 Sum_probs=43.0
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCCCCEEEEcC-CchhhHHHHHHc-CceEEEECCC----CCCHHHHHHH
Q 023114 220 EVEAEKPNPTIFLKACDLLGVKPEDAVHVGD-DRRNDVWGARDA-GCDAWLWGSD----VHSFKEVAQR 282 (287)
Q Consensus 220 ~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGD-s~~~Di~~a~~a-G~~~i~v~~~----~~~~~el~~~ 282 (287)
|....=|+.+.+..+++..+++ +++=|- +-.+|+..++.. |+..+.++.- .-+++|..+.
T Consensus 172 DGtl~G~n~~l~~~l~~~~~ip---viaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~~ 237 (241)
T COG0106 172 DGTLSGPNVDLVKELAEAVDIP---VIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKFTLEEALAC 237 (241)
T ss_pred ccccCCCCHHHHHHHHHHhCcC---EEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHHHH
Confidence 4456778999999999999764 444431 228999999999 8999888863 4445555443
No 438
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=25.10 E-value=3.7e+02 Score=21.67 Aligned_cols=91 Identities=20% Similarity=0.194 Sum_probs=55.2
Q ss_pred HcCCeEEEEeCCCcc---hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCch----hhH
Q 023114 184 KAGVKLAVVSNFDTR---LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRR----NDV 256 (287)
Q Consensus 184 ~~g~~i~ivSn~~~~---~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~----~Di 256 (287)
.+|-++++++.++.. ....+....... ++. .--|-...+..++.++|++..+..++.=++. .++
T Consensus 65 ~~g~~V~~l~~GDP~~~~~~~~~~~~~~~~-~~v--------eviPGiSs~~aaaa~~g~~l~~~~~is~~~~~~~~~~l 135 (210)
T PRK05787 65 AKGKNVVVLSTGDPLFSGLGKLLKVRRAVA-EDV--------EVIPGISSVQYAAARLGIDMNDVVFTTSHGRGPNFEEL 135 (210)
T ss_pred hCCCcEEEEecCCccccccHHHHHHHhccC-CCe--------EEEcCHHHHHHHHHHhCCCHHHcEEEeecCCCcchHHH
Confidence 456778888877654 222332221111 111 1237788999999999998888777643211 234
Q ss_pred HHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 257 WGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 257 ~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
..+...|-..+.+..+..+..++.+.+
T Consensus 136 ~~~~~~~~~~v~l~~~~~~~~~i~~~L 162 (210)
T PRK05787 136 EDLLKNGRKVIMLPDPRFGPKEIAAEL 162 (210)
T ss_pred HHHHHcCCeEEEEcCCCCCHHHHHHHH
Confidence 555556666677666667788887765
No 439
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=25.08 E-value=4.6e+02 Score=22.81 Aligned_cols=105 Identities=10% Similarity=0.089 Sum_probs=60.6
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCC-CCCCH---HHHHHHHHHcCCCCCCEEEE
Q 023114 174 EAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEA-EKPNP---TIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 174 g~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~-~KP~~---~~~~~~~~~l~~~p~~~l~V 248 (287)
..+++|+..++++|-+.-+.-.+.+ ++.+++...-.+ -..++...+... .-+.. .+...++++..++ +..=
T Consensus 5 ~~k~iL~~A~~~~yaV~AfNv~n~e~~~avi~AAee~~-sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VP---ValH 80 (284)
T PRK12857 5 TVAELLKKAEKGGYAVGAFNCNNMEIVQAIVAAAEAEK-SPVIIQASQGAIKYAGIEYISAMVRTAAEKASVP---VALH 80 (284)
T ss_pred cHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhC-CCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCC---EEEE
Confidence 4678888888888877665544333 455554432111 133333322211 11211 2244566677663 3444
Q ss_pred cCCch--hhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 249 GDDRR--NDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 249 GDs~~--~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
-|++. .++..|-++|+.+||+....-+++|-.+.
T Consensus 81 LDH~~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~ 116 (284)
T PRK12857 81 LDHGTDFEQVMKCIRNGFTSVMIDGSKLPLEENIAL 116 (284)
T ss_pred CCCCCCHHHHHHHHHcCCCeEEEeCCCCCHHHHHHH
Confidence 45533 57889999999999999887777765443
No 440
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=25.07 E-value=3.7e+02 Score=25.46 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=56.8
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHc----------C
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLL----------G 239 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l----------~ 239 (287)
..|++...++.+...+-.|- .+--+.. +....++.++......++..+....++|....+...+... .
T Consensus 131 ~Cp~~v~~~~~~a~~~p~i~-~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 209 (515)
T TIGR03140 131 NCPDVVQALNQMALLNPNIS-HTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQ 209 (515)
T ss_pred CCHHHHHHHHHHHHhCCCce-EEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccc
Confidence 45888888888877532222 1111111 4555566666543334444444445666665554444332 2
Q ss_pred CCCCCEEEEcCCchhhHHHHHHc---CceEEEEC
Q 023114 240 VKPEDAVHVGDDRRNDVWGARDA---GCDAWLWG 270 (287)
Q Consensus 240 ~~p~~~l~VGDs~~~Di~~a~~a---G~~~i~v~ 270 (287)
..+-++++||- ++.++.+|..+ |.++.++.
T Consensus 210 ~~~~dVvIIGg-GpAGl~AA~~la~~G~~v~li~ 242 (515)
T TIGR03140 210 LDPYDVLVVGG-GPAGAAAAIYAARKGLRTAMVA 242 (515)
T ss_pred cCCCCEEEECC-CHHHHHHHHHHHHCCCcEEEEe
Confidence 44568999999 59999988754 66776663
No 441
>PRK00865 glutamate racemase; Provisional
Probab=25.04 E-value=2.2e+02 Score=24.22 Aligned_cols=65 Identities=15% Similarity=0.066 Sum_probs=33.4
Q ss_pred CeEEEEeCCCcc---hHHHHHhcCCcCccceEEecccCCC---CCCCHHHHHHHH---HHcCCCCCCEEEEcCCchh
Q 023114 187 VKLAVVSNFDTR---LRPVLRALNCDHWFDAVAVSAEVEA---EKPNPTIFLKAC---DLLGVKPEDAVHVGDDRRN 254 (287)
Q Consensus 187 ~~i~ivSn~~~~---~~~~l~~~gl~~~f~~~~~~~~~~~---~KP~~~~~~~~~---~~l~~~p~~~l~VGDs~~~ 254 (287)
-+|+|+-++--- ++.+.+.+ ...+.++.+|.... .|+..++...+. +.|.-..-++++|.-....
T Consensus 6 ~~IgvfDSGiGGLtvl~~i~~~l---p~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~ 79 (261)
T PRK00865 6 APIGVFDSGVGGLTVLREIRRLL---PDEHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIACNTAS 79 (261)
T ss_pred CeEEEEECCccHHHHHHHHHHHC---CCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHH
Confidence 478888775433 34444443 22366677765332 355555554433 2232233356777665333
No 442
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=24.96 E-value=4.1e+02 Score=22.16 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=62.3
Q ss_pred CccHHHHHHHHHH-cCCeEEEEe--CCC---cch-HHHH-HhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCC
Q 023114 172 DPEAEKVFKAIRK-AGVKLAVVS--NFD---TRL-RPVL-RALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPE 243 (287)
Q Consensus 172 ~pg~~~ll~~L~~-~g~~i~ivS--n~~---~~~-~~~l-~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~ 243 (287)
-|++.|||..|.. .+.++.+.+ ++. ..+ .... ++.|-. +-+++ ....+...|.+.+..+++..-
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR--~vCIv------p~~~~~~~~~~~l~~~~~~~~ 97 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGR--HVCIV------PDEQSLSEYKKALGEAGLSDV 97 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCe--EEEEc------CChhhHHHHHHHHhhcccccc
Confidence 3899999999976 356666654 332 122 2222 222321 22222 123345678888888887532
Q ss_pred CEEEEcCCchhhHHHHHHcCceEEEECCCCCCHH-HHHHHhC
Q 023114 244 DAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFK-EVAQRIG 284 (287)
Q Consensus 244 ~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~-el~~~l~ 284 (287)
-=++|||+ ..++. ..-.|+++++|....++.. ++.+.+.
T Consensus 98 vEfvvg~~-~e~~~-~~~~~iDF~vVDc~~~d~~~~vl~~~~ 137 (218)
T PF07279_consen 98 VEFVVGEA-PEEVM-PGLKGIDFVVVDCKREDFAARVLRAAK 137 (218)
T ss_pred ceEEecCC-HHHHH-hhccCCCEEEEeCCchhHHHHHHHHhc
Confidence 12457996 77774 5567999999999776666 6665543
No 443
>cd00153 RalGDS_RA Ubiquitin domain of RalGDS-like factor (RLF) and related proteins. This CD represents the C-terminal Ras-associating (RA) domain of three closely related guanine-nucleotide exchange factors (GEF's), Ral guanine nucleotide dissociation stimulator (RalGDS), RalGDS-like (RGL), and RalGDS-like factor (RLF). The RalGDS proteins are downstream effectors of the Ras-related protein Ral, providing a mechanism for Ral activation by extracellular signals. The RA domain is structurally similar to ubiquitin and exists in a number of other signalling proteins including AF6, rasfadin, SNX27, CYR1, and STE50.
Probab=24.74 E-value=96 Score=21.60 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=21.5
Q ss_pred CCeEEEEeCCCcc---hHHHHHhcCCcCc
Q 023114 186 GVKLAVVSNFDTR---LRPVLRALNCDHW 211 (287)
Q Consensus 186 g~~i~ivSn~~~~---~~~~l~~~gl~~~ 211 (287)
-||..++||.++. +++.++++++++.
T Consensus 17 ~YKSIlltsqDktP~VI~ral~Khnl~~~ 45 (87)
T cd00153 17 LYKSILLTSQDKAPQVIRRAMEKHNLESE 45 (87)
T ss_pred eEEEEEEecCCcCHHHHHHHHHHhCCCcC
Confidence 3899999998876 5999999998654
No 444
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=24.72 E-value=2.6e+02 Score=24.87 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCeEEEEeCCC----------------------cchHHHHHhcCCcCccceEEecc
Q 023114 176 EKVFKAIRKAGVKLAVVSNFD----------------------TRLRPVLRALNCDHWFDAVAVSA 219 (287)
Q Consensus 176 ~~ll~~L~~~g~~i~ivSn~~----------------------~~~~~~l~~~gl~~~f~~~~~~~ 219 (287)
..+|+++.++|+++.--|+.. +.+++.|+..||..-+..+++.+
T Consensus 180 VdLL~y~~~~~l~Viss~GaaaksDPTrv~v~Dis~t~~DPlsR~vRrrLrk~GI~~GIpVVFS~E 245 (430)
T KOG2018|consen 180 VDLLEYCYNHGLKVISSTGAAAKSDPTRVNVADISETEEDPLSRSVRRRLRKRGIEGGIPVVFSLE 245 (430)
T ss_pred hHHHHHHHHcCCceEeccCccccCCCceeehhhccccccCcHHHHHHHHHHHhccccCCceEEecC
Confidence 478899999998887666531 01467788899988888877765
No 445
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=24.64 E-value=2.9e+02 Score=25.49 Aligned_cols=74 Identities=24% Similarity=0.299 Sum_probs=48.5
Q ss_pred EEeCCCcchHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCC-chhhHHHHHHcCceEEEE
Q 023114 191 VVSNFDTRLRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDD-RRNDVWGARDAGCDAWLW 269 (287)
Q Consensus 191 ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs-~~~Di~~a~~aG~~~i~v 269 (287)
|=-|.+..+.++|.++|.. |++. .| .=...+..+|++|+++|+.+-- ...+|.-|...|+...-
T Consensus 86 VKCN~dp~vl~~La~lG~g--fdca--------Sk----~E~~lvl~~gv~P~riIyanpcK~~s~IkyAa~~gV~~~t- 150 (448)
T KOG0622|consen 86 VKCNSDPKVLRLLASLGCG--FDCA--------SK----NELDLVLSLGVSPERIIYANPCKQVSQIKYAAKHGVSVMT- 150 (448)
T ss_pred EEeCCCHHHHHHHHHcCcc--ceec--------Ch----HHHHHHHhcCCChHHeEecCCCccHHHHHHHHHcCCeEEe-
Confidence 3346666688889998865 4544 12 1244566789999999998752 16788888888877655
Q ss_pred CCCCCCHHHHHHH
Q 023114 270 GSDVHSFKEVAQR 282 (287)
Q Consensus 270 ~~~~~~~~el~~~ 282 (287)
.++..|+.+.
T Consensus 151 ---fDne~el~kv 160 (448)
T KOG0622|consen 151 ---FDNEEELEKV 160 (448)
T ss_pred ---ecCHHHHHHH
Confidence 3455555543
No 446
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=24.45 E-value=1.3e+02 Score=25.20 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=14.0
Q ss_pred cCCCCCCEEEEcC--CchhhHHHHHHcCceEEE
Q 023114 238 LGVKPEDAVHVGD--DRRNDVWGARDAGCDAWL 268 (287)
Q Consensus 238 l~~~p~~~l~VGD--s~~~Di~~a~~aG~~~i~ 268 (287)
.|++|+++++-|- + ..++..|...|...+.
T Consensus 60 ~g~~~~~Ii~~gp~k~-~~~l~~a~~~~~~~i~ 91 (251)
T PF02784_consen 60 AGFPPDRIIFTGPGKS-DEELEEAIENGVATIN 91 (251)
T ss_dssp TTTTGGGEEEECSS---HHHHHHHHHHTESEEE
T ss_pred hhccccceeEecCccc-HHHHHHHHhCCceEEE
Confidence 4555555555554 2 3344444444444444
No 447
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=24.42 E-value=99 Score=22.58 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=25.1
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcchHHHHHhc
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRAL 206 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~ 206 (287)
.+++.+.++.++++|.+++.+|+.. .+.+.....
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~-~l~~~~~~~ 89 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGG-KLLEMAREH 89 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc-hHHHHHHHc
Confidence 3678899999999999999999643 344444433
No 448
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=24.25 E-value=5.1e+02 Score=23.07 Aligned_cols=131 Identities=17% Similarity=0.070 Sum_probs=84.6
Q ss_pred CChhHHHHHHhccCCCCchHHHHHHHHHHhhcccc---ccC---CccHHHHHHHHHHcCCeEEEEeCCCcch------HH
Q 023114 134 DGRPFWQFIVSSSTGCSDSQYFEELYNYYTTEKAW---HLC---DPEAEKVFKAIRKAGVKLAVVSNFDTRL------RP 201 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~pg~~~ll~~L~~~g~~i~ivSn~~~~~------~~ 201 (287)
++..|...+.--....++.+...+.+..-..+... ... -++-..+++.+...++.+.--|++-+.. -+
T Consensus 78 ~~~~~~sRl~~Gtg~y~s~~~~~~a~~asg~e~vTva~rr~~~~~~~~~~~~~~~~~~~~~~lpNTag~~ta~eAv~~a~ 157 (326)
T PRK11840 78 AGKTFSSRLLVGTGKYKDFEETAAAVEASGAEIVTVAVRRVNVSDPGAPMLTDYIDPKKYTYLPNTAGCYTAEEAVRTLR 157 (326)
T ss_pred CCEEEecceeEecCCCCCHHHHHHHHHHhCCCEEEEEEEeecCcCCCcchHHHhhhhcCCEECccCCCCCCHHHHHHHHH
Confidence 33444444444444455556666555544332211 111 1345678888888888888788776542 23
Q ss_pred HHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHc---CCCCCCE-EEEcCCchhhHHHHHHcCceEEEE
Q 023114 202 VLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLL---GVKPEDA-VHVGDDRRNDVWGARDAGCDAWLW 269 (287)
Q Consensus 202 ~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l---~~~p~~~-l~VGDs~~~Di~~a~~aG~~~i~v 269 (287)
..+.++-.+|+.--+..|+ ...-|++.-..++++.| |+ .+ .++-|+ ..-...+.++|+.+++-
T Consensus 158 lare~~~~~~iKlEvi~e~-~~llpd~~~~v~aa~~L~~~Gf---~v~~yc~~d-~~~a~~l~~~g~~avmP 224 (326)
T PRK11840 158 LAREAGGWDLVKLEVLGDA-KTLYPDMVETLKATEILVKEGF---QVMVYCSDD-PIAAKRLEDAGAVAVMP 224 (326)
T ss_pred HHHHhcCCCeEEEEEcCCC-CCcccCHHHHHHHHHHHHHCCC---EEEEEeCCC-HHHHHHHHhcCCEEEee
Confidence 3445566677777777664 45678899999999999 76 35 889998 88888999999976665
No 449
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=24.23 E-value=3.7e+02 Score=22.58 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=10.4
Q ss_pred ccHHHHHHHHHHcCCeEEEE
Q 023114 173 PEAEKVFKAIRKAGVKLAVV 192 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~iv 192 (287)
++..++.+.|++.|+.+..+
T Consensus 13 ~~~~~l~~~l~~~G~~~~~~ 32 (255)
T PRK05752 13 EECAALAASLAEAGIFSSSL 32 (255)
T ss_pred HHHHHHHHHHHHcCCCEEEc
Confidence 44555555555555544443
No 450
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=24.14 E-value=5.4e+02 Score=23.33 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=53.2
Q ss_pred CCeEEEEeCCCcc---------hHHHHHhcCCc-CccceEEecccCCCCCCCHHHHHHHHH---HcCCCC-CCEEEEcCC
Q 023114 186 GVKLAVVSNFDTR---------LRPVLRALNCD-HWFDAVAVSAEVEAEKPNPTIFLKACD---LLGVKP-EDAVHVGDD 251 (287)
Q Consensus 186 g~~i~ivSn~~~~---------~~~~l~~~gl~-~~f~~~~~~~~~~~~KP~~~~~~~~~~---~l~~~p-~~~l~VGDs 251 (287)
+-++.|+|+..-. +...++..|+. ..|...+...+....||..+.+..+.+ +.+++. +-++.+|-.
T Consensus 30 ~~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG 109 (369)
T cd08198 30 RPKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGG 109 (369)
T ss_pred CCeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECCh
Confidence 3678899985321 22334444542 223444455556667887666665555 456542 357788876
Q ss_pred chhhHHHHHHc----CceEEEECCC
Q 023114 252 RRNDVWGARDA----GCDAWLWGSD 272 (287)
Q Consensus 252 ~~~Di~~a~~a----G~~~i~v~~~ 272 (287)
-.-|+..+-++ |++.|.+++.
T Consensus 110 ~v~D~ag~vA~~~~rGip~I~IPTT 134 (369)
T cd08198 110 AVLDAVGYAAATAHRGVRLIRIPTT 134 (369)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 67888766654 8899999874
No 451
>PRK13937 phosphoheptose isomerase; Provisional
Probab=24.05 E-value=1.2e+02 Score=24.41 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=23.4
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR 198 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~ 198 (287)
.+++.+.++.++++|.+++.+|+....
T Consensus 119 t~~~~~~~~~ak~~g~~~I~iT~~~~s 145 (188)
T PRK13937 119 SPNVLAALEKARELGMKTIGLTGRDGG 145 (188)
T ss_pred cHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 478999999999999999999986544
No 452
>PRK15108 biotin synthase; Provisional
Probab=24.04 E-value=2.7e+02 Score=24.96 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc--hHHHHHhcCCcCc
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR--LRPVLRALNCDHW 211 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~--~~~~l~~~gl~~~ 211 (287)
+.+.++++.+++.+..+. +|++.-. .-..|+..|++.+
T Consensus 111 e~i~~~i~~ik~~~i~v~-~s~G~ls~e~l~~LkeAGld~~ 150 (345)
T PRK15108 111 PYLEQMVQGVKAMGLETC-MTLGTLSESQAQRLANAGLDYY 150 (345)
T ss_pred HHHHHHHHHHHhCCCEEE-EeCCcCCHHHHHHHHHcCCCEE
Confidence 456677778887777764 7776544 5667777888653
No 453
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=23.96 E-value=52 Score=30.00 Aligned_cols=17 Identities=18% Similarity=-0.101 Sum_probs=14.3
Q ss_pred CeeEEEEeCCCCccCCC
Q 023114 73 THKALLVDAAGTLLVPS 89 (287)
Q Consensus 73 ~~k~vifD~DGTLid~~ 89 (287)
++.+|-||||+||..-.
T Consensus 26 ~i~~~GfdmDyTL~~Y~ 42 (424)
T KOG2469|consen 26 NIGIVGFDMDYTLARYN 42 (424)
T ss_pred cCcEEeeccccchhhhc
Confidence 57899999999998633
No 454
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=23.90 E-value=4.6e+02 Score=23.93 Aligned_cols=83 Identities=16% Similarity=0.094 Sum_probs=45.9
Q ss_pred ccHH-HHHHHHHHcCC-eEEEEeCCC-c-c-----hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcC-CCC
Q 023114 173 PEAE-KVFKAIRKAGV-KLAVVSNFD-T-R-----LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLG-VKP 242 (287)
Q Consensus 173 pg~~-~ll~~L~~~g~-~i~ivSn~~-~-~-----~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~-~~p 242 (287)
+|.. ++-+.+++.|. ++.|+|+.. . . +...|+..|+. ..+. +...+.|..+....+++.+. .++
T Consensus 34 ~g~~~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~----~~~~--~~v~~~P~~~~v~~~~~~~r~~~~ 107 (395)
T PRK15454 34 PGAVSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIA----MTLW--PCPVGEPCITDVCAAVAQLRESGC 107 (395)
T ss_pred cCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCe----EEEE--CCCCCCcCHHHHHHHHHHHHhcCc
Confidence 4444 44466677674 445555432 1 1 34445554543 2222 22345777787877777653 467
Q ss_pred CCEEEEcCCchhhHHHHHHcC
Q 023114 243 EDAVHVGDDRRNDVWGARDAG 263 (287)
Q Consensus 243 ~~~l~VGDs~~~Di~~a~~aG 263 (287)
+-+|.||-. +=+..||.++
T Consensus 108 D~IiavGGG--S~iD~AKaia 126 (395)
T PRK15454 108 DGVIAFGGG--SVLDAAKAVA 126 (395)
T ss_pred CEEEEeCCh--HHHHHHHHHH
Confidence 889999964 4455565543
No 455
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=23.85 E-value=4.3e+02 Score=22.06 Aligned_cols=98 Identities=22% Similarity=0.259 Sum_probs=55.8
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc---hHHHHHhcCCcCccceEEeccc-CCCCCCCHHHHHHHHHH--cCCCCCC
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR---LRPVLRALNCDHWFDAVAVSAE-VEAEKPNPTIFLKACDL--LGVKPED 244 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~---~~~~l~~~gl~~~f~~~~~~~~-~~~~KP~~~~~~~~~~~--l~~~p~~ 244 (287)
..+...++++++|+.|.+.+|+=|-.+. +..++....+ + -+.+.+. .+-.|=-|+.+.++-+- +-.+..+
T Consensus 94 ~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~---V-llMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~ 169 (220)
T COG0036 94 ATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDL---V-LLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLD 169 (220)
T ss_pred cCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCE---E-EEEeECCCCcccccCHHHHHHHHHHHHHhcccCC
Confidence 4578999999999999999999997666 4666666432 1 1222222 22223344454443322 2111112
Q ss_pred EEEEcCCch--hhHHHHHHcCceEEEECCC
Q 023114 245 AVHVGDDRR--NDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 245 ~l~VGDs~~--~Di~~a~~aG~~~i~v~~~ 272 (287)
+..-=|.+. +.+..+.+||...+..|+.
T Consensus 170 ~~IeVDGGI~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 170 ILIEVDGGINLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred eEEEEeCCcCHHHHHHHHHcCCCEEEEEEE
Confidence 333223223 3456667789998877765
No 456
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=23.72 E-value=4.9e+02 Score=23.50 Aligned_cols=83 Identities=16% Similarity=0.146 Sum_probs=49.2
Q ss_pred CeEEEEeCCCcchHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchhhH-------HHH
Q 023114 187 VKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDV-------WGA 259 (287)
Q Consensus 187 ~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di-------~~a 259 (287)
-||+|+|++-.=-++...-+=-..+.|..++++-. .-|.++.+..+++..+-...=.+.|+. +.-|+ +.|
T Consensus 44 ~kValIsGGGSGHEPah~GyVG~GmLdAAv~G~VF--aSPs~~qI~~ai~av~~~~GvLlivkN-YtGDvlNF~mAaE~a 120 (356)
T PRK11468 44 GKVALLSGGGSGHEPMHCGFVGQGMLDGACPGEIF--TSPTPDQMFECAMQVDGGEGVLLIIKN-YTGDVLNFETATELL 120 (356)
T ss_pred CcEEEEecCCccccccccceecCCcccceeecccc--CCCCHHHHHHHHHhhcCCCCEEEEecc-cHHhhccHHHHHHHH
Confidence 47999997532222211111012345666666643 568888999998887755444445554 56664 567
Q ss_pred HHcCceE--EEECCC
Q 023114 260 RDAGCDA--WLWGSD 272 (287)
Q Consensus 260 ~~aG~~~--i~v~~~ 272 (287)
+.-|+++ |.|++.
T Consensus 121 ~~eGi~v~~V~V~DD 135 (356)
T PRK11468 121 HDSGVKVTTVLIDDD 135 (356)
T ss_pred HhCCCcEEEEEeCCc
Confidence 7778876 666554
No 457
>PRK03670 competence damage-inducible protein A; Provisional
Probab=23.69 E-value=2.3e+02 Score=24.10 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHH-c---CceEEEECCC------CCCHHHHHHHhCcC
Q 023114 227 NPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARD-A---GCDAWLWGSD------VHSFKEVAQRIGVK 286 (287)
Q Consensus 227 ~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~-a---G~~~i~v~~~------~~~~~el~~~l~~~ 286 (287)
+...+...+..+|++...+..|+|+ ..+|..+.+ + +...|.+.+| --+.+-+++.+|.+
T Consensus 21 N~~~la~~L~~~G~~v~~~~iV~Dd-~~~I~~~l~~a~~~~~DlVIttGGlGpt~dD~T~eava~a~g~~ 89 (252)
T PRK03670 21 NSAFIAQKLTEKGYWVRRITTVGDD-VEEIKSVVLEILSRKPEVLVISGGLGPTHDDVTMLAVAEALGRE 89 (252)
T ss_pred hHHHHHHHHHHCCCEEEEEEEcCCC-HHHHHHHHHHHhhCCCCEEEECCCccCCCCCchHHHHHHHhCCC
Confidence 3445667788899998889999997 888877743 2 3455555544 34455555555543
No 458
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=23.58 E-value=4.9e+02 Score=22.56 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCC-CCC---CHHHHHHHHHHcCCCCCCEEEEcC
Q 023114 176 EKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEA-EKP---NPTIFLKACDLLGVKPEDAVHVGD 250 (287)
Q Consensus 176 ~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~-~KP---~~~~~~~~~~~l~~~p~~~l~VGD 250 (287)
+++|+..+++||-+.-+.-.+.. ++.+++...-.. -..++....... ..+ -..+...++++..++ +..=-|
T Consensus 2 k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~-sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VP---V~lHLD 77 (276)
T cd00947 2 KELLKKAREGGYAVGAFNINNLETLKAILEAAEETR-SPVILQISEGAIKYAGLELLVAMVKAAAERASVP---VALHLD 77 (276)
T ss_pred HHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhC-CCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCC---EEEECC
Confidence 56788888888877665544333 455554432111 133333322211 122 112334555566553 333345
Q ss_pred Cc--hhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 251 DR--RNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 251 s~--~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
++ ..++..|.++|+.+||+.....+++|-.+.
T Consensus 78 H~~~~~~i~~ai~~GftSVMiD~S~l~~eeNi~~ 111 (276)
T cd00947 78 HGSSFELIKRAIRAGFSSVMIDGSHLPFEENVAK 111 (276)
T ss_pred CCCCHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH
Confidence 43 467888999999999999887777765443
No 459
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=23.55 E-value=5.4e+02 Score=23.07 Aligned_cols=92 Identities=10% Similarity=0.048 Sum_probs=52.8
Q ss_pred ccHHH-HHHHHHHcCCeEEEEeCCCcc------hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcC-CCCCC
Q 023114 173 PEAEK-VFKAIRKAGVKLAVVSNFDTR------LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLG-VKPED 244 (287)
Q Consensus 173 pg~~~-ll~~L~~~g~~i~ivSn~~~~------~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~-~~p~~ 244 (287)
+|..+ +-+.+++.|-++.|+|+.... +...++..|+.-.|+ ++ .+.|..+....+++.+. ..++-
T Consensus 15 ~g~~~~l~~~l~~~g~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~------~~-~~ep~~~~v~~~~~~~~~~~~d~ 87 (366)
T PRK09423 15 KGALARLGEYLKPLGKRALVIADEFVLGIVGDRVEASLKEAGLTVVFE------VF-NGECSDNEIDRLVAIAEENGCDV 87 (366)
T ss_pred CCHHHHHHHHHHHcCCEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEE------Ee-CCCCCHHHHHHHHHHHHhcCCCE
Confidence 44443 334556667789999974321 222334444431111 12 35566677777776653 35677
Q ss_pred EEEEcCCchhhHHHHHHc--CceEEEECC
Q 023114 245 AVHVGDDRRNDVWGARDA--GCDAWLWGS 271 (287)
Q Consensus 245 ~l~VGDs~~~Di~~a~~a--G~~~i~v~~ 271 (287)
+|.||-....|+.-+-+. |++.|.|++
T Consensus 88 IIavGGGsv~D~aK~iA~~~~~p~i~IPT 116 (366)
T PRK09423 88 VIGIGGGKTLDTAKAVADYLGVPVVIVPT 116 (366)
T ss_pred EEEecChHHHHHHHHHHHHcCCCEEEeCC
Confidence 899997556666544332 778888876
No 460
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=23.48 E-value=1.6e+02 Score=21.58 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcC
Q 023114 175 AEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALN 207 (287)
Q Consensus 175 ~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~g 207 (287)
+.++++...+.|.++.++|+....-..+++.+|
T Consensus 71 i~~l~~~a~~~g~~v~iis~~~e~G~~L~~~~g 103 (113)
T PF03465_consen 71 IEELIELAEQSGAKVEIISSEHEEGEQLLKGFG 103 (113)
T ss_dssp HHHHHHHHHHTTSEEEEE-TTSHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCEEEEEcCCCccHHHHHhcCC
Confidence 678888889999999999998665555556653
No 461
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=23.41 E-value=2.6e+02 Score=21.11 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEcCCc-------hhhHHHHHHcCceEE
Q 023114 224 EKPNPTIFLKACDLLGVKPEDAVHVGDDR-------RNDVWGARDAGCDAW 267 (287)
Q Consensus 224 ~KP~~~~~~~~~~~l~~~p~~~l~VGDs~-------~~Di~~a~~aG~~~i 267 (287)
..|.++-|...+..+|++++..++|=|+. ..-..+++.+|..-+
T Consensus 76 ~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v 126 (138)
T cd01445 76 MEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDV 126 (138)
T ss_pred CCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCe
Confidence 45667778888888888766544444421 122234556676644
No 462
>PRK10949 protease 4; Provisional
Probab=23.35 E-value=7.2e+02 Score=24.42 Aligned_cols=138 Identities=17% Similarity=0.144 Sum_probs=0.0
Q ss_pred EEEEeCCCCccCCCc---cHHHHHHHHHHHhCCC---CCHHHHHHHHHHHhcccCCCcccccccCC--hhHHHHHHhccC
Q 023114 76 ALLVDAAGTLLVPSQ---PMAQIYREIGEKYGVA---YSEAEILNRYRRAYEQPWGGSRLRYVNDG--RPFWQFIVSSST 147 (287)
Q Consensus 76 ~vifD~DGTLid~~~---~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 147 (287)
++++|++|+|++... ........++..-..+ ....++.+.+......+......-.++.. ..+...
T Consensus 58 vL~ldl~G~lve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~------ 131 (618)
T PRK10949 58 ALLLDISGVIVDKPSSSNKLSQLGRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSM------ 131 (618)
T ss_pred EEEEECCCcccCCCCCCCcHHHHhhhhcccCCCccccccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHH------
Q ss_pred CCCchHHHHHHHHHHhhccccccCCccHHHHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEEecccCCC----
Q 023114 148 GCSDSQYFEELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAEVEA---- 223 (287)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~~~---- 223 (287)
.++.+.|..+|+.|.+|+...+....-...+... .|.++-......
T Consensus 132 -------------------------~eI~~ai~~fk~sGKpVvA~~~~~~s~~YyLASa-----AD~I~l~P~G~v~~~G 181 (618)
T PRK10949 132 -------------------------QYIGKALREFRDSGKPVYAVGDSYSQGQYYLASF-----ANKIYLSPQGVVDLHG 181 (618)
T ss_pred -------------------------HHHHHHHHHHHHhCCeEEEEecCccchhhhhhhh-----CCEEEECCCceEEEee
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEcC
Q 023114 224 EKPNPTIFLKACDLLGVKPEDAVHVGD 250 (287)
Q Consensus 224 ~KP~~~~~~~~~~~l~~~p~~~l~VGD 250 (287)
--+..-.|..+++++|++++ ++-+|+
T Consensus 182 ~~~~~~~~k~lLdKlGV~~~-v~r~G~ 207 (618)
T PRK10949 182 FATNGLYYKSLLDKLKVSTH-VFRVGT 207 (618)
T ss_pred eecchhhHHHHHHHcCCeEE-EEEecC
No 463
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=23.26 E-value=5.7e+02 Score=23.23 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=55.3
Q ss_pred Ccc-HHHHHHHHHHcCCeEEEEeCCCc--chHHHHHhcCCcCcc-ceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEE
Q 023114 172 DPE-AEKVFKAIRKAGVKLAVVSNFDT--RLRPVLRALNCDHWF-DAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVH 247 (287)
Q Consensus 172 ~pg-~~~ll~~L~~~g~~i~ivSn~~~--~~~~~l~~~gl~~~f-~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~ 247 (287)
.|+ +.+.++++++.++.+.+-.+... ++.+.+...|.+-.+ +....+.....+..++..+...++.++++ ++
T Consensus 117 ~p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IP---VI- 192 (369)
T TIGR01304 117 KPELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVP---VI- 192 (369)
T ss_pred ChHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCC---EE-
Confidence 344 46788899988755444333211 245666666763211 11111111212345677788888888763 34
Q ss_pred EcCC-chhhHHHHHHcCceEEEECCC
Q 023114 248 VGDD-RRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 248 VGDs-~~~Di~~a~~aG~~~i~v~~~ 272 (287)
+||- ...|...+..+|+..|+++++
T Consensus 193 ~G~V~t~e~A~~~~~aGaDgV~~G~g 218 (369)
T TIGR01304 193 AGGVNDYTTALHLMRTGAAGVIVGPG 218 (369)
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECCC
Confidence 3431 156677777899999887653
No 464
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=23.18 E-value=1.1e+02 Score=25.79 Aligned_cols=38 Identities=13% Similarity=0.312 Sum_probs=31.8
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCC
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNC 208 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl 208 (287)
-.||=...-+.|++.|+++.|+|+++.. ....++..|+
T Consensus 72 a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~ 110 (277)
T PRK00994 72 AAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGL 110 (277)
T ss_pred CCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCC
Confidence 4578777888889999999999999877 6788888776
No 465
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=23.15 E-value=1.3e+02 Score=25.60 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=30.8
Q ss_pred CCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCC
Q 023114 171 CDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNC 208 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl 208 (287)
-.||=...-+.|++.|+++.|+|+++.. ....++..|+
T Consensus 71 ~~PGP~~ARE~l~~~~iP~IvI~D~p~~k~kd~l~~~g~ 109 (276)
T PF01993_consen 71 AAPGPTKAREMLSAKGIPCIVISDAPTKKAKDALEEEGF 109 (276)
T ss_dssp TSHHHHHHHHHHHHSSS-EEEEEEGGGGGGHHHHHHTT-
T ss_pred CCCCcHHHHHHHHhCCCCEEEEcCCCchhhHHHHHhcCC
Confidence 4588888888899999999999999877 7888888886
No 466
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=23.07 E-value=1.5e+02 Score=25.77 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=27.7
Q ss_pred CCccHHHHHHHHHHcCC-eEEEEeCCCcc--hHHHHHhcCC
Q 023114 171 CDPEAEKVFKAIRKAGV-KLAVVSNFDTR--LRPVLRALNC 208 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g~-~i~ivSn~~~~--~~~~l~~~gl 208 (287)
+.|++.++++.+++.|+ .+.+.||+.-. ....+...|+
T Consensus 69 l~~~l~~iv~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~ 109 (302)
T TIGR02668 69 LRKDLIEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGL 109 (302)
T ss_pred cccCHHHHHHHHHhCCCceEEEEcCchHHHHHHHHHHHCCC
Confidence 56888999999998888 89999998532 2333444454
No 467
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=23.03 E-value=1.1e+02 Score=23.63 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=23.1
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCCCcc
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNFDTR 198 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~~~~ 198 (287)
.+++.+.++.++++|.+++.+|+.+..
T Consensus 92 t~~~~~~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 92 SKNVLKAIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 467889999999999999999986544
No 468
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=22.94 E-value=4.2e+02 Score=21.61 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEcC--CchhhHHHHHHc-CceEEEECCC
Q 023114 227 NPTIFLKACDLLGVKPEDAVHVGD--DRRNDVWGARDA-GCDAWLWGSD 272 (287)
Q Consensus 227 ~~~~~~~~~~~l~~~p~~~l~VGD--s~~~Di~~a~~a-G~~~i~v~~~ 272 (287)
..+.+..+.+..++ .++..|+ + ..|+..+... |+..++++++
T Consensus 171 ~~~~~~~i~~~~~i---pvi~~Ggi~~-~~d~~~~l~~~gad~V~igr~ 215 (231)
T cd02801 171 DWDYIAEIKEAVSI---PVIANGDIFS-LEDALRCLEQTGVDGVMIGRG 215 (231)
T ss_pred CHHHHHHHHhCCCC---eEEEeCCCCC-HHHHHHHHHhcCCCEEEEcHH
Confidence 44455555554443 3677776 3 5677777777 8999999986
No 469
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=22.90 E-value=5.4e+02 Score=22.85 Aligned_cols=87 Identities=15% Similarity=0.060 Sum_probs=50.8
Q ss_pred HHHHHHHcCCeEEEEeCCCcc------hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcC-CCCCCEEEEcC
Q 023114 178 VFKAIRKAGVKLAVVSNFDTR------LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLG-VKPEDAVHVGD 250 (287)
Q Consensus 178 ll~~L~~~g~~i~ivSn~~~~------~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~-~~p~~~l~VGD 250 (287)
+-+.++..|-++.|+|+.... +...++..|+. ++..+.. +.|..+....+++.+. .+++-+|.||-
T Consensus 14 l~~~~~~~g~~~liv~~~~~~~~~~~~v~~~l~~~~i~--~~~~~~~-----~~p~~~~v~~~~~~~~~~~~d~IIavGG 86 (349)
T cd08550 14 IAAILSTFGSKVAVVGGKTVLKKSRPRFEAALAKSIIV--VDVIVFG-----GECSTEEVVKALCGAEEQEADVIIGVGG 86 (349)
T ss_pred HHHHHHHcCCeEEEEEChHHHHHHHHHHHHHHHhcCCe--eEEEEcC-----CCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 334555556788889975321 23334444442 1222221 3466777777776664 35566788998
Q ss_pred CchhhHHHHHH--cCceEEEECC
Q 023114 251 DRRNDVWGARD--AGCDAWLWGS 271 (287)
Q Consensus 251 s~~~Di~~a~~--aG~~~i~v~~ 271 (287)
.-..|+.-+-+ .|.+.|.|++
T Consensus 87 Gs~~D~aK~ia~~~~~p~i~VPT 109 (349)
T cd08550 87 GKTLDTAKAVADRLDKPIVIVPT 109 (349)
T ss_pred cHHHHHHHHHHHHcCCCEEEeCC
Confidence 55777754433 3778888876
No 470
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=22.84 E-value=4.4e+02 Score=21.86 Aligned_cols=42 Identities=2% Similarity=0.006 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHHcCceEEEECCC
Q 023114 228 PTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLWGSD 272 (287)
Q Consensus 228 ~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~ 272 (287)
.+.+.++++..+++ +++||-=...|+..+.++|...|.+-+.
T Consensus 153 l~~l~~~~~~~~iP---vvAIGGI~~~n~~~~~~~GA~giAvisa 194 (221)
T PRK06512 153 LSLAEWWAEMIEIP---CIVQAGSDLASAVEVAETGAEFVALERA 194 (221)
T ss_pred hHHHHHHHHhCCCC---EEEEeCCCHHHHHHHHHhCCCEEEEhHH
Confidence 44666777777664 8999864589999999999999988764
No 471
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=22.73 E-value=5.9e+02 Score=23.19 Aligned_cols=104 Identities=12% Similarity=0.104 Sum_probs=54.8
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCc---chHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEc
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDT---RLRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVG 249 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~---~~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VG 249 (287)
-+...+++..++.++..++...... .+...++.+|+. .+..+.+.....-++......++++|++......+.
T Consensus 51 ~d~~~l~~~~~~~~id~vi~~~e~~l~~~~~~~l~~~gi~----~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~ 126 (423)
T TIGR00877 51 TDIEALVEFAKKKKIDLAVIGPEAPLVLGLVDALEEAGIP----VFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFT 126 (423)
T ss_pred CCHHHHHHHHHHhCCCEEEECCchHHHHHHHHHHHHCCCe----EECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEEC
Confidence 3556667777776665554332211 134455565652 111111111112345666778888898887777777
Q ss_pred CCchhhH-HHHHHcCce-EEEECCC---------CCCHHHHHHH
Q 023114 250 DDRRNDV-WGARDAGCD-AWLWGSD---------VHSFKEVAQR 282 (287)
Q Consensus 250 Ds~~~Di-~~a~~aG~~-~i~v~~~---------~~~~~el~~~ 282 (287)
| ..|+ ..+...|.+ .+.=... +++.+|+.+.
T Consensus 127 ~--~~~~~~~~~~~g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~ 168 (423)
T TIGR00877 127 D--PEEALSYIQEKGAPAIVVKADGLAAGKGVIVAKTNEEAIKA 168 (423)
T ss_pred C--HHHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHH
Confidence 5 3443 456677877 4433221 5566666543
No 472
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=22.67 E-value=3.5e+02 Score=20.53 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=46.2
Q ss_pred HHHHcCCeEEEEeC-CCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCc------
Q 023114 181 AIRKAGVKLAVVSN-FDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDR------ 252 (287)
Q Consensus 181 ~L~~~g~~i~ivSn-~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~------ 252 (287)
.|+.+|+++.-+-. -+.+ +.....+.+ .+.+..+.-.+...+...-+...+++.+.+ +-.++||=..
T Consensus 26 ~lr~~G~eVi~LG~~vp~e~i~~~a~~~~----~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~-~~~i~vGG~~~~~~~~ 100 (137)
T PRK02261 26 ALTEAGFEVINLGVMTSQEEFIDAAIETD----ADAILVSSLYGHGEIDCRGLREKCIEAGLG-DILLYVGGNLVVGKHD 100 (137)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcC----CCEEEEcCccccCHHHHHHHHHHHHhcCCC-CCeEEEECCCCCCccC
Confidence 45566766654432 2211 333333322 355555554444333333444444444442 2335555432
Q ss_pred -hhhHHHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 253 -RNDVWGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 253 -~~Di~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
..|.+.+++.|+..++-++ .+++++.+.+
T Consensus 101 ~~~~~~~l~~~G~~~vf~~~--~~~~~i~~~l 130 (137)
T PRK02261 101 FEEVEKKFKEMGFDRVFPPG--TDPEEAIDDL 130 (137)
T ss_pred hHHHHHHHHHcCCCEEECcC--CCHHHHHHHH
Confidence 2345678888876666333 3666666554
No 473
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=22.62 E-value=5.4e+02 Score=22.73 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHH----HHHHHHHHcC-CCCCCEEE
Q 023114 174 EAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPT----IFLKACDLLG-VKPEDAVH 247 (287)
Q Consensus 174 g~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~----~~~~~~~~l~-~~p~~~l~ 247 (287)
..+++|+..+++||-+.-+.-.+-+ +..+++...-.. -..++...+....-.... +...++++.. ++ =+++
T Consensus 4 ~~k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~-sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VP--ValH 80 (307)
T PRK05835 4 KGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEEN-SPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIP--VALH 80 (307)
T ss_pred CHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHC-CCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCe--EEEE
Confidence 3678888888888877776644433 555555432211 123333322221111122 2334445543 42 2344
Q ss_pred E--cCCchhhHHHHHHcCceEEEECCCCCCHHHHHHH
Q 023114 248 V--GDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 248 V--GDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~ 282 (287)
. |.+ ..++..|-++|+.+||+.....+++|-.+.
T Consensus 81 LDHg~~-~e~i~~ai~~GftSVM~DgS~l~~eeNi~~ 116 (307)
T PRK05835 81 LDHGTT-FESCEKAVKAGFTSVMIDASHHAFEENLEL 116 (307)
T ss_pred CCCCCC-HHHHHHHHHcCCCEEEEeCCCCCHHHHHHH
Confidence 3 233 566778889999999999877777765443
No 474
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=22.57 E-value=4.8e+02 Score=22.45 Aligned_cols=41 Identities=12% Similarity=0.316 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCccceEEecccC
Q 023114 177 KVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAEV 221 (287)
Q Consensus 177 ~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~ 221 (287)
..|..++++|-||..+|.-+.....+++..|+ |.++.+|..
T Consensus 6 ~~l~~~k~~g~ki~~lTaYD~~~A~~~d~agv----D~iLVGDSl 46 (261)
T PF02548_consen 6 SDLRKMKQKGEKIVMLTAYDYPSARIADEAGV----DIILVGDSL 46 (261)
T ss_dssp HHHHHHHHHT--EEEEE--SHHHHHHHHHTT-----SEEEE-TTH
T ss_pred HHHHHHHhCCCcEEEEecccHHHHHHHHHcCC----CEEEeCCcH
Confidence 45667778889999999988888888888885 777777753
No 475
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=22.47 E-value=2.1e+02 Score=26.36 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=51.5
Q ss_pred ccHHHHHHHHHHcCCeE--EEEeCCCcc--hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 023114 173 PEAEKVFKAIRKAGVKL--AVVSNFDTR--LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHV 248 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i--~ivSn~~~~--~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~V 248 (287)
-|+..++..|.+++.+- +-+|.++.. +....+++|+. ..++ .++-.|.+-..-++.+| .+++..
T Consensus 99 RGa~~~~~kla~~~~~~gViasSaGNha~a~Ayaa~~Lgip---aTIV------mP~~tp~~kiq~~~nlG---A~Vil~ 166 (457)
T KOG1250|consen 99 RGAGNALQKLAKQQKKAGVIASSAGNHAQAAAYAARKLGIP---ATIV------MPVATPLMKIQRCRNLG---ATVILS 166 (457)
T ss_pred hhHHHHHHHHHHhhhcCceEEecCccHHHHHHHHHHhcCCc---eEEE------ecCCChHHHHHHHhccC---CEEEEe
Confidence 58899999997775333 334445555 35666788875 2222 35556777788888888 468999
Q ss_pred cCCchhhH------HHHHHcCceEE
Q 023114 249 GDDRRNDV------WGARDAGCDAW 267 (287)
Q Consensus 249 GDs~~~Di------~~a~~aG~~~i 267 (287)
|++ .|. ..|++-|+..|
T Consensus 167 G~~--~deAk~~a~~lAke~gl~yI 189 (457)
T KOG1250|consen 167 GED--WDEAKAFAKRLAKENGLTYI 189 (457)
T ss_pred ccc--HHHHHHHHHHHHHhcCceec
Confidence 985 332 34555565543
No 476
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=22.36 E-value=67 Score=26.76 Aligned_cols=9 Identities=33% Similarity=0.645 Sum_probs=5.8
Q ss_pred HHHHHHHHc
Q 023114 177 KVFKAIRKA 185 (287)
Q Consensus 177 ~ll~~L~~~ 185 (287)
.+++.|++.
T Consensus 130 ~~v~~L~~~ 138 (220)
T PF03332_consen 130 KLVEALKKE 138 (220)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 467777765
No 477
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=22.33 E-value=52 Score=22.52 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=12.8
Q ss_pred eEEEEeCCCCccCCCc
Q 023114 75 KALLVDAAGTLLVPSQ 90 (287)
Q Consensus 75 k~vifD~DGTLid~~~ 90 (287)
-.|+++=|||.++.+.
T Consensus 41 ~~lvL~eDGT~VddEe 56 (78)
T PF02017_consen 41 VRLVLEEDGTEVDDEE 56 (78)
T ss_dssp CEEEETTTTCBESSCH
T ss_pred cEEEEeCCCcEEccHH
Confidence 4578899999998653
No 478
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=22.28 E-value=1.5e+02 Score=20.87 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCeEEEEeCCCcchHHHHHhcCCcCcc
Q 023114 177 KVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWF 212 (287)
Q Consensus 177 ~ll~~L~~~g~~i~ivSn~~~~~~~~l~~~gl~~~f 212 (287)
.+.+.++++|.++.+ +|-+..+...++..|+.+.+
T Consensus 62 ~~~~~~~~~g~~l~l-~~~~~~v~~~l~~~gl~~~~ 96 (106)
T TIGR02886 62 GRYKKIKNEGGEVIV-CNVSPAVKRLFELSGLFKII 96 (106)
T ss_pred HHHHHHHHcCCEEEE-EeCCHHHHHHHHHhCCceEE
Confidence 566678888887775 55556688889999988776
No 479
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=22.27 E-value=4.3e+02 Score=25.00 Aligned_cols=97 Identities=13% Similarity=0.069 Sum_probs=54.6
Q ss_pred CCccHHHHHHHHHHcC--CeEEEEeCCCcchHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHH-cC--------
Q 023114 171 CDPEAEKVFKAIRKAG--VKLAVVSNFDTRLRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDL-LG-------- 239 (287)
Q Consensus 171 ~~pg~~~ll~~L~~~g--~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~-l~-------- 239 (287)
..|.+...++.+...+ +..-.+ +. .......+..++......++..+....++|..+-+...+.. .+
T Consensus 130 ~Cp~~v~~~~~~a~~~~~i~~~~i-d~-~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 207 (517)
T PRK15317 130 NCPDVVQALNLMAVLNPNITHTMI-DG-ALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELN 207 (517)
T ss_pred CcHHHHHHHHHHHHhCCCceEEEE-Ec-hhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcc
Confidence 3578888888887652 222222 11 11455555666654333334333344455555544444432 12
Q ss_pred -CCCCCEEEEcCCchhhHHHHHHc---CceEEEEC
Q 023114 240 -VKPEDAVHVGDDRRNDVWGARDA---GCDAWLWG 270 (287)
Q Consensus 240 -~~p~~~l~VGDs~~~Di~~a~~a---G~~~i~v~ 270 (287)
...-++++||- ++.++.+|..+ |++++++.
T Consensus 208 ~~~~~dvvIIGg-GpaGl~aA~~la~~G~~v~li~ 241 (517)
T PRK15317 208 AKDPYDVLVVGG-GPAGAAAAIYAARKGIRTGIVA 241 (517)
T ss_pred cCCCCCEEEECC-CHHHHHHHHHHHHCCCcEEEEe
Confidence 23348999998 59999988754 66666653
No 480
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=22.21 E-value=87 Score=26.22 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=22.5
Q ss_pred CCcc-HHHHHHHHHHcCCeEEEEeCCCc
Q 023114 171 CDPE-AEKVFKAIRKAGVKLAVVSNFDT 197 (287)
Q Consensus 171 ~~pg-~~~ll~~L~~~g~~i~ivSn~~~ 197 (287)
+.++ +.++++.+++.|+++++.||+..
T Consensus 83 l~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 83 LQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4566 45899999999999999999874
No 481
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=22.15 E-value=6e+02 Score=23.08 Aligned_cols=97 Identities=12% Similarity=0.149 Sum_probs=51.9
Q ss_pred chHHHHHHHHHHhh---ccccccCCccHHHHHHHHHHcCCeEEEE-eCCCcc-hHHHHHhcCCcCccceEEeccc-CCCC
Q 023114 151 DSQYFEELYNYYTT---EKAWHLCDPEAEKVFKAIRKAGVKLAVV-SNFDTR-LRPVLRALNCDHWFDAVAVSAE-VEAE 224 (287)
Q Consensus 151 ~~~~~~~~~~~~~~---~~~~~~~~pg~~~ll~~L~~~g~~i~iv-Sn~~~~-~~~~l~~~gl~~~f~~~~~~~~-~~~~ 224 (287)
+.+.++++++.... .....+-.|+..+++++|.++|+.+.+- ||.+.+ +...++. |.. .+.+.+.+.. ...+
T Consensus 152 ~~~~~~~~~~~~~~~i~~vTlAPE~~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~-Ga~-~~THlfNaM~~~~hR 229 (380)
T TIGR00221 152 DVELFKKFLCEAGGVITKVTLAPEEDQHFELIRHLKDAGIIVSAGHTNATYELAKAAFKA-GAT-HATHLYNAMSPIHHR 229 (380)
T ss_pred CHHHHHHHHHhcCCCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHc-CCC-eeeeeccCCCCcCCC
Confidence 44555666554321 1111223588999999999999888773 455444 3333322 321 1222222111 1111
Q ss_pred -----------------------CCCHHHHHHHHHHcCCCCCCEEEEcCC
Q 023114 225 -----------------------KPNPTIFLKACDLLGVKPEDAVHVGDD 251 (287)
Q Consensus 225 -----------------------KP~~~~~~~~~~~l~~~p~~~l~VGDs 251 (287)
-=+|.++..+.+..| +++++.|-|+
T Consensus 230 ~pg~vga~l~~~~~~~elI~Dg~Hv~p~~~~~~~r~kg--~~~~~lvtDa 277 (380)
T TIGR00221 230 EPGVIGAVLDHDDVYTEIIADGIHIHPLNIRLAKKLKG--DSKLCLVTDS 277 (380)
T ss_pred CCcHHHHHhcCCCcEEEEEcCCCcCCHHHHHHHHHhcC--CCcEEEEecc
Confidence 125667777766655 4689999996
No 482
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=22.10 E-value=5.8e+02 Score=22.90 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=35.9
Q ss_pred HHHHHHHHcCCCCCCEEEEcCCch----hhHHHHHHcC-----------ceEEEECCCCCCHHHHHHH
Q 023114 230 IFLKACDLLGVKPEDAVHVGDDRR----NDVWGARDAG-----------CDAWLWGSDVHSFKEVAQR 282 (287)
Q Consensus 230 ~~~~~~~~l~~~p~~~l~VGDs~~----~Di~~a~~aG-----------~~~i~v~~~~~~~~el~~~ 282 (287)
+...++++.+++- +++.. +.. .++..+-++| +.++|+.....+++|-.++
T Consensus 76 ~~~~~A~~~~VPV--~lHLD-H~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~ 140 (340)
T cd00453 76 HVHQMAEHYGVPV--ILHTD-HCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEI 140 (340)
T ss_pred HHHHHHHHCCCCE--EEEcC-CCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHH
Confidence 4456677777743 45554 334 7899999999 9999999987777775443
No 483
>TIGR03553 F420_FbiB_CTERM F420 biosynthesis protein FbiB, C-terminal domain. Coenzyme F420 differs between the Archaea and the Actinobacteria, where the numbers of glutamate residues attached are 2 (Archaea) or 5-6 (Mycobacterium). The enzyme in the Archaea is homologous to the N-terminal domain of FbiB from Mycobacterium bovis, and is responsible for glutamate ligation. Therefore it seems likely that the C-terminal domain of FbiB, modeled by this alignment, is involved in additional glutamate ligation.
Probab=21.90 E-value=1.4e+02 Score=23.85 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=17.5
Q ss_pred hHHHHHHcCceEEEECCCCCCHHHHHHHhCc
Q 023114 255 DVWGARDAGCDAWLWGSDVHSFKEVAQRIGV 285 (287)
Q Consensus 255 Di~~a~~aG~~~i~v~~~~~~~~el~~~l~~ 285 (287)
=+.+|.+.|+.+++++....+.+++.+.+|+
T Consensus 130 l~LaA~~~Glgt~~~~~~~~~~~~v~~~l~l 160 (194)
T TIGR03553 130 LLVALAVEGLGSCWVGSTIFAADVVRAELDL 160 (194)
T ss_pred HHHHHHHcCCCeEEecCcccCHHHHHHHhCc
Confidence 3455666666666655433445566666654
No 484
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=21.87 E-value=4.3e+02 Score=21.32 Aligned_cols=96 Identities=16% Similarity=0.239 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc------hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcC------C
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR------LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLG------V 240 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~------~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~------~ 240 (287)
++..++.+.|++.|+.+..+.-.... ....+..+. .+|.++... +.......+.++ .
T Consensus 8 ~~~~~l~~~L~~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~iiftS--------~~av~~~~~~~~~~~~~~~ 76 (239)
T cd06578 8 PQADELAALLEALGAEVLELPLIEIEPLDDAELDAALADLD---EYDWLIFTS--------PNAVEAFFEALEELGLRAL 76 (239)
T ss_pred HHhHHHHHHHHHcCCcEEEeeeEEEecCChHHHHHHHHhcC---CCCEEEEEC--------HHHHHHHHHHHHhhCCccc
Q ss_pred CCCCEEEEcCCchhhHHHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 241 KPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 241 ~p~~~l~VGDs~~~Di~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
..-.++.||+. ..+. +++.|+..+.+ .+..+.+++.+.+
T Consensus 77 ~~~~~~avG~~-Ta~~--l~~~g~~~~~~-~~~~~~~~L~~~i 115 (239)
T cd06578 77 AGLKIAAVGPK-TAEA--LREAGLTADFV-PEEGDSEGLLELL 115 (239)
T ss_pred cCCEEEEECHH-HHHH--HHHcCCCceeC-CCccCHHHHHHHH
No 485
>PRK13663 hypothetical protein; Provisional
Probab=21.83 E-value=2.1e+02 Score=26.45 Aligned_cols=81 Identities=17% Similarity=0.315 Sum_probs=47.1
Q ss_pred CccHH-HHHHHHHHcCCeEEEEeCCCcc----------------hH---HHHHhcCCcCccceEEecccCCCCCCCHHHH
Q 023114 172 DPEAE-KVFKAIRKAGVKLAVVSNFDTR----------------LR---PVLRALNCDHWFDAVAVSAEVEAEKPNPTIF 231 (287)
Q Consensus 172 ~pg~~-~ll~~L~~~g~~i~ivSn~~~~----------------~~---~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~ 231 (287)
.|+.+ .+|++|+++ ..|+||-|.... +. ..++..|+ ++..++...- .+.|....|
T Consensus 51 ~pdsKi~mL~~lkD~-~EIvi~I~A~DIe~nKiRgDlGItYd~dVLRLiD~fr~~gl--~V~sVVITqy--~~qp~a~~F 125 (493)
T PRK13663 51 EPDNKIKLLQELKDQ-VEIVIAINANDIERNKIRGDLGITYDQDVLRLIDDFRELGL--YVGSVVITQY--DGQPAADAF 125 (493)
T ss_pred CcCHHHHHHHHhhcc-ceEEEEEEhhhhhhccccccCCCchhHHHHHHHHHHHhcCc--eeeeEEEEec--CCChHHHHH
Confidence 35443 688899887 667666553211 11 11222232 2333333322 477889999
Q ss_pred HHHHHHcCCCCCCEEEEcCCchhhHHH
Q 023114 232 LKACDLLGVKPEDAVHVGDDRRNDVWG 258 (287)
Q Consensus 232 ~~~~~~l~~~p~~~l~VGDs~~~Di~~ 258 (287)
..-++++|++.-.-..|.. +++|+..
T Consensus 126 ~~rLe~~GIkvy~Hy~i~G-YP~dv~~ 151 (493)
T PRK13663 126 RNRLERLGIKVYRHYPIKG-YPTDVDH 151 (493)
T ss_pred HHHHHHCCCceEEecCcCC-CCCCCCc
Confidence 9999999987655555555 5666643
No 486
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=21.78 E-value=5.7e+02 Score=22.72 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=32.8
Q ss_pred ceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEc--CCchhhHHHHHHcCceEEEEC
Q 023114 213 DAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVG--DDRRNDVWGARDAGCDAWLWG 270 (287)
Q Consensus 213 ~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VG--Ds~~~Di~~a~~aG~~~i~v~ 270 (287)
|.++.-...+..+.-.+.+.++.+.+. .-.+..| .+ ..+...+.++|+..|.|+
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p---~~~vi~GnV~t-~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLP---DSFVIAGNVGT-PEAVRELENAGADATKVG 165 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCC---CCEEEEecCCC-HHHHHHHHHcCcCEEEEC
Confidence 444433334444444455556555553 3345655 44 888888899999988777
No 487
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=21.69 E-value=1.6e+02 Score=25.96 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=28.8
Q ss_pred cCCccHHHHHHHHHHcCC--eEEEEeCCCcc--hHHHHHhcCCc
Q 023114 170 LCDPEAEKVFKAIRKAGV--KLAVVSNFDTR--LRPVLRALNCD 209 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~--~i~ivSn~~~~--~~~~l~~~gl~ 209 (287)
.+.|++.++++.+++.+. .+.+.||+... ....+...|++
T Consensus 73 llr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~ 116 (329)
T PRK13361 73 LVRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLK 116 (329)
T ss_pred CccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCC
Confidence 457899999999998753 78999998643 33445556664
No 488
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=21.64 E-value=1.2e+02 Score=21.87 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCC
Q 023114 173 PEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNC 208 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl 208 (287)
++..++.+.+++.|+.++.+|..+.. +....+..++
T Consensus 46 ~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~ 82 (124)
T PF00578_consen 46 PELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGL 82 (124)
T ss_dssp HHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTC
T ss_pred hHHHHHhhhhccceEEeeecccccccchhhhhhhhcc
Confidence 56677888888889999999987666 7888887774
No 489
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=21.63 E-value=4.5e+02 Score=21.47 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=56.1
Q ss_pred cHHHHHHHHHH-cCCeEEEEeCCCcchHHHHHhcCCcCccceEEec------ccCCCCCCCHHHHHHHHHHcCCCCCCEE
Q 023114 174 EAEKVFKAIRK-AGVKLAVVSNFDTRLRPVLRALNCDHWFDAVAVS------AEVEAEKPNPTIFLKACDLLGVKPEDAV 246 (287)
Q Consensus 174 g~~~ll~~L~~-~g~~i~ivSn~~~~~~~~l~~~gl~~~f~~~~~~------~~~~~~KP~~~~~~~~~~~l~~~p~~~l 246 (287)
...++++.+++ .++++..-++..+.+ ..+...|. |.+... .......+....+..+.+..+++ ++
T Consensus 106 ~~~~~i~~~~~~~~i~vi~~v~t~ee~-~~a~~~G~----d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iP---vi 177 (221)
T PRK01130 106 TLAELVKRIKEYPGQLLMADCSTLEEG-LAAQKLGF----DFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCP---VI 177 (221)
T ss_pred CHHHHHHHHHhCCCCeEEEeCCCHHHH-HHHHHcCC----CEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCC---EE
Confidence 56788888888 676665433333333 33445554 222211 00012334456666666666542 55
Q ss_pred EEcCC-chhhHHHHHHcCceEEEECCCCCCHHHH
Q 023114 247 HVGDD-RRNDVWGARDAGCDAWLWGSDVHSFKEV 279 (287)
Q Consensus 247 ~VGDs-~~~Di~~a~~aG~~~i~v~~~~~~~~el 279 (287)
..|-= ...|+..+.++|...+++++..-...+.
T Consensus 178 a~GGI~t~~~~~~~l~~GadgV~iGsai~~~~~~ 211 (221)
T PRK01130 178 AEGRINTPEQAKKALELGAHAVVVGGAITRPEEI 211 (221)
T ss_pred EECCCCCHHHHHHHHHCCCCEEEEchHhcCCHHH
Confidence 55541 1578999999999999999874444433
No 490
>PRK10765 nitroreductase A; Provisional
Probab=21.62 E-value=1.3e+02 Score=25.20 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=23.5
Q ss_pred hhHHHHHHcCceEEEECCCCCCHHHHHHHhCcC
Q 023114 254 NDVWGARDAGCDAWLWGSDVHSFKEVAQRIGVK 286 (287)
Q Consensus 254 ~Di~~a~~aG~~~i~v~~~~~~~~el~~~l~~~ 286 (287)
|=+.+|.+.|+.+++++.-..+.+++.+.||++
T Consensus 114 nl~laA~slGLGs~~ig~~~~~~~~v~~~L~LP 146 (240)
T PRK10765 114 NALLAAESLGLGGVYIGGLRNNIEAVTELLKLP 146 (240)
T ss_pred HHHHHHHHcCCCEEeeCccccCHHHHHHHhCcC
Confidence 445667888888888876445677788877754
No 491
>PF13686 DrsE_2: DsrE/DsrF/DrsH-like family; PDB: 2QS7_C 3PNX_C.
Probab=21.60 E-value=86 Score=24.33 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=19.8
Q ss_pred CccHHHHHHHHHHcCCeEEEEeCC
Q 023114 172 DPEAEKVFKAIRKAGVKLAVVSNF 195 (287)
Q Consensus 172 ~pg~~~ll~~L~~~g~~i~ivSn~ 195 (287)
.|.+.++++..++.|++++.|+-+
T Consensus 90 v~sl~eLl~~a~e~GVk~~AC~ms 113 (148)
T PF13686_consen 90 VPSLEELLEMAKELGVKFYACSMS 113 (148)
T ss_dssp ---HHHHHHHHHHCCEEEEEEHHH
T ss_pred CCCHHHHHHHHHHCCCEEEEehhh
Confidence 378999999999999999999866
No 492
>PRK06849 hypothetical protein; Provisional
Probab=21.54 E-value=4.1e+02 Score=23.96 Aligned_cols=89 Identities=10% Similarity=0.082 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCchh
Q 023114 176 EKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRN 254 (287)
Q Consensus 176 ~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~~~ 254 (287)
..+++.++++++.+.|-+..... +....+. +...+.......+.-..--++..+...++++|++-.++..+.+ ..
T Consensus 66 ~~L~~i~~~~~id~vIP~~e~~~~~a~~~~~--l~~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~--~~ 141 (389)
T PRK06849 66 QALLSIVQRENIDLLIPTCEEVFYLSHAKEE--LSAYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITD--PE 141 (389)
T ss_pred HHHHHHHHHcCCCEEEECChHHHhHHhhhhh--hcCCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCC--HH
Confidence 34455566677777766654322 1222222 2223332222222222334556678889999998888888865 56
Q ss_pred hHHHHHHc--CceEEE
Q 023114 255 DVWGARDA--GCDAWL 268 (287)
Q Consensus 255 Di~~a~~a--G~~~i~ 268 (287)
|+..+..- |.+.|.
T Consensus 142 ~l~~~~~~~~~~P~vl 157 (389)
T PRK06849 142 AIRNFMFKTPHTPYVL 157 (389)
T ss_pred HHHHHhhcCCCCcEEE
Confidence 66543322 555544
No 493
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=21.53 E-value=2.1e+02 Score=26.46 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEcCCchhhHH----HHHHcCceEEEECCCC
Q 023114 229 TIFLKACDLLGVKPEDAVHVGDDRRNDVW----GARDAGCDAWLWGSDV 273 (287)
Q Consensus 229 ~~~~~~~~~l~~~p~~~l~VGDs~~~Di~----~a~~aG~~~i~v~~~~ 273 (287)
.-...+++++|--.+-+++||| +..|+- ++...|..++.+..+.
T Consensus 209 ~~Va~~Akk~gkGveaI~~vGD-GyddLI~G~~a~id~~vDvfVvEGgP 256 (505)
T PF10113_consen 209 EEVAELAKKYGKGVEAIMHVGD-GYDDLITGLKACIDMGVDVFVVEGGP 256 (505)
T ss_pred HHHHHHHHHhCCCceEEEEecC-ChHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 3456778888877788999999 487764 5556677777776663
No 494
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=21.37 E-value=3.1e+02 Score=29.38 Aligned_cols=87 Identities=10% Similarity=0.130 Sum_probs=58.1
Q ss_pred HHHHHHHHHcCCeEEEEeCCCcc---hHHHHHhcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEEEEcCCc
Q 023114 176 EKVFKAIRKAGVKLAVVSNFDTR---LRPVLRALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAVHVGDDR 252 (287)
Q Consensus 176 ~~ll~~L~~~g~~i~ivSn~~~~---~~~~l~~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l~VGDs~ 252 (287)
.=||++|+..|.++.|+|--.+- ++.+|..+|.. | +--| +.-+.+-=+.++++||.++.=..||=-+
T Consensus 1266 AiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgyl-Y----~RLD----g~t~vEqRQaLmerFNaD~RIfcfILST- 1335 (1958)
T KOG0391|consen 1266 AILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYL-Y----VRLD----GNTSVEQRQALMERFNADRRIFCFILST- 1335 (1958)
T ss_pred HHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceE-E----EEec----CCccHHHHHHHHHHhcCCCceEEEEEec-
Confidence 34789999999999999976544 35666666542 1 1111 2233456678889999888777777765
Q ss_pred hhhHHHHHHcCceE-EEECCC
Q 023114 253 RNDVWGARDAGCDA-WLWGSD 272 (287)
Q Consensus 253 ~~Di~~a~~aG~~~-i~v~~~ 272 (287)
.++=.+.+-.|..+ |++.++
T Consensus 1336 rSggvGiNLtgADTVvFYDsD 1356 (1958)
T KOG0391|consen 1336 RSGGVGINLTGADTVVFYDSD 1356 (1958)
T ss_pred cCCccccccccCceEEEecCC
Confidence 66666777777776 555554
No 495
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=21.37 E-value=1.2e+02 Score=25.38 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHHcCCeEEE--EeCCCcch---HHHHH-hcCCcCccceEEecccCCCCCCCHHHHHHHHHHcCCCCCCEE
Q 023114 173 PEAEKVFKAIRKAGVKLAV--VSNFDTRL---RPVLR-ALNCDHWFDAVAVSAEVEAEKPNPTIFLKACDLLGVKPEDAV 246 (287)
Q Consensus 173 pg~~~ll~~L~~~g~~i~i--vSn~~~~~---~~~l~-~~gl~~~f~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~~~l 246 (287)
|.+.+.+..|.++|+.+.+ ||+.+..+ ...++ ..=+...+..++....++.--|.++......+++.--+.+..
T Consensus 74 ~~lq~~i~~le~~G~d~illlCTG~F~~l~~~~~lleP~ril~~lV~al~~~~~vGVivP~~eQ~~~~~~kW~~l~~~~~ 153 (221)
T PF07302_consen 74 PRLQACIAQLEAQGYDVILLLCTGEFPGLTARNPLLEPDRILPPLVAALVGGHQVGVIVPLPEQIAQQAEKWQPLGNPVV 153 (221)
T ss_pred HHHHHHHHHHHHCCCCEEEEeccCCCCCCCCCcceeehHHhHHHHHHHhcCCCeEEEEecCHHHHHHHHHHHHhcCCCeE
Confidence 6677888889888876654 77755431 10111 111223344445555566677888888888888764444444
Q ss_pred EEcCCch-hhHH----HH---HHcCceEEEECC---CCCCHHHHHHHhCcC
Q 023114 247 HVGDDRR-NDVW----GA---RDAGCDAWLWGS---DVHSFKEVAQRIGVK 286 (287)
Q Consensus 247 ~VGDs~~-~Di~----~a---~~aG~~~i~v~~---~~~~~~el~~~l~~~ 286 (287)
++--|.. .|-. +| ++.|+..|...+ .....+.+.+.+|+.
T Consensus 154 ~a~asPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r~~~~~~~g~P 204 (221)
T PF07302_consen 154 VAAASPYEGDEEELAAAARELAEQGADLIVLDCMGYTQEMRDIVQRALGKP 204 (221)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHhCCC
Confidence 4433322 1222 22 234777776644 344445556656654
No 496
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=21.33 E-value=84 Score=23.18 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=11.1
Q ss_pred CeeEEEEeCCCCc
Q 023114 73 THKALLVDAAGTL 85 (287)
Q Consensus 73 ~~k~vifD~DGTL 85 (287)
.+..|.|||.+|+
T Consensus 31 ~P~iV~fdmk~tl 43 (112)
T TIGR02744 31 SPVTVAFDMKQTL 43 (112)
T ss_pred CCeEEEEecHHHH
Confidence 4578999999998
No 497
>PF11421 Synthase_beta: ATP synthase F1 beta subunit; InterPro: IPR020971 F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has three main subunits: a, b and c. This entry represents the beta subunit of the F1 component. The NMR solution structure of the protein in SDS micelles was found to contain two helices, an N-terminal amphipathic alpha-helix and a C-terminal alpha-helix separated by a large unstructured internal domain. The N-terminal alpha-helix is the Tom20 receptor binding site whereas the C-terminal alpha-helix is located upstream of the mitochondrial processing peptidase cleavage site [].; GO: 0005524 ATP binding, 0016887 ATPase activity, 0006200 ATP catabolic process, 0006754 ATP biosynthetic process, 0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); PDB: 1PYV_A.
Probab=21.29 E-value=91 Score=19.04 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHhhcccCC
Q 023114 6 TTVRTKLRRLIASASNRSN 24 (287)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (287)
|++|...+-+|.+++-|..
T Consensus 1 MASRR~lSSlLRSssrr~~ 19 (49)
T PF11421_consen 1 MASRRLLSSLLRSSSRRSA 19 (49)
T ss_dssp ---SHHHHHHHHHHHTTSS
T ss_pred CchHHHHHHHHHHHhcccc
Confidence 6788889999998887776
No 498
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=21.22 E-value=3.3e+02 Score=24.02 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEcCCchh------hHHHHHHcCceEEEECCCCCCHHHHHHHh
Q 023114 228 PTIFLKACDLLGVKPEDAVHVGDDRRN------DVWGARDAGCDAWLWGSDVHSFKEVAQRI 283 (287)
Q Consensus 228 ~~~~~~~~~~l~~~p~~~l~VGDs~~~------Di~~a~~aG~~~i~v~~~~~~~~el~~~l 283 (287)
+..|.-+-+--++++.+ .+|-+. .| =++.|+..|+++|-|.+.-.+.+|+.+.|
T Consensus 146 ~TAyrmL~dfv~L~~GD-~vIQNg-anS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~L 205 (354)
T KOG0025|consen 146 CTAYRMLKDFVQLNKGD-SVIQNG-ANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQL 205 (354)
T ss_pred hHHHHHHHHHHhcCCCC-eeeecC-cccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHH
Confidence 34555555556787777 556663 44 37889999999999999889999988766
No 499
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=20.91 E-value=1.3e+02 Score=24.97 Aligned_cols=39 Identities=10% Similarity=0.155 Sum_probs=32.8
Q ss_pred cCCccHHHHHHHHHHcCCeEEEEeCCCcc-hHHHHHhcCC
Q 023114 170 LCDPEAEKVFKAIRKAGVKLAVVSNFDTR-LRPVLRALNC 208 (287)
Q Consensus 170 ~~~pg~~~ll~~L~~~g~~i~ivSn~~~~-~~~~l~~~gl 208 (287)
+--||=...-+.|.+.+++..|+++.+.. +..-++..|+
T Consensus 71 paaPGP~kARE~l~~s~~PaiiigDaPg~~vkdeleeqGl 110 (277)
T COG1927 71 PAAPGPKKAREILSDSDVPAIIIGDAPGLKVKDELEEQGL 110 (277)
T ss_pred CCCCCchHHHHHHhhcCCCEEEecCCccchhHHHHHhcCC
Confidence 34588788888888999999999999977 7888888876
No 500
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=20.89 E-value=4.1e+02 Score=20.75 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEcCCchhhHHHHHH-----cCceEEEECCC
Q 023114 227 NPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARD-----AGCDAWLWGSD 272 (287)
Q Consensus 227 ~~~~~~~~~~~l~~~p~~~l~VGDs~~~Di~~a~~-----aG~~~i~v~~~ 272 (287)
+...+...++++|......-.|.|+ ..++..+-+ .++..+....|
T Consensus 23 n~~~l~~~L~~~G~~v~~~~iv~Dd-~~~i~~~l~~~~~~~~~DlVIttGG 72 (163)
T TIGR02667 23 SGQYLVERLTEAGHRLADRAIVKDD-IYQIRAQVSAWIADPDVQVILITGG 72 (163)
T ss_pred cHHHHHHHHHHCCCeEEEEEEcCCC-HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3457777899999988888899997 888876632 25666666554
Done!