BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023115
         (287 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ONX|A Chain A, Crystal Structure Of A Domain Of A Protein Involved In
           Formation Of Actin Cytoskeleton
 pdb|3ONX|B Chain B, Crystal Structure Of A Domain Of A Protein Involved In
           Formation Of Actin Cytoskeleton
          Length = 141

 Score = 31.2 bits (69), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 142 SSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEK 174
           S  +LGDLS T L++VD LQ VI    KD++E+
Sbjct: 15  SQTELGDLSDTLLSKVDDLQDVIEIXRKDVAER 47


>pdb|3OKQ|A Chain A, Crystal Structure Of A Core Domain Of Yeast Actin
           Nucleation Cofactor Bud6
          Length = 141

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 142 SSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEK 174
           S  +LGDLS T L++VD LQ VI    KD++E+
Sbjct: 15  SQTELGDLSDTLLSKVDDLQDVIEIMRKDVAER 47


>pdb|3OAJ|A Chain A, Crystal Structure Of Putative Dioxygenase From Bacillus
           Subtilis Subsp. Subtilis Str. 168
 pdb|3OAJ|B Chain B, Crystal Structure Of Putative Dioxygenase From Bacillus
           Subtilis Subsp. Subtilis Str. 168
          Length = 335

 Score = 27.7 bits (60), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 114 RPSMAFHLLYSKSGLQLEGKLHDLIRGLSSGDLGDLSPTQLTRV 157
           +P     LL +  GL+  GK  D +R  S+GD+G++   +LT +
Sbjct: 163 QPDKTADLLENIMGLERVGKEGDFVRYRSAGDIGNVIDLKLTPI 206


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,576,447
Number of Sequences: 62578
Number of extensions: 272110
Number of successful extensions: 810
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 8
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)