BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023115
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P43273|TGA2_ARATH Transcription factor TGA2 OS=Arabidopsis thaliana GN=TGA2 PE=1 SV=1
Length = 330
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 115/259 (44%), Gaps = 53/259 (20%)
Query: 21 GDNNNSDGESFQKFFES----WLVEQNQHLQALISASKQQENNSSSSNFEEQVRVVVE-- 74
GD +S G + F++ WL E+N+ + L SA +S ++R++V+
Sbjct: 100 GDQAHSTGGNGALAFDAEHSRWLEEKNKQMNELRSALNAHAGDS-------ELRIIVDGV 152
Query: 75 --HYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEG 132
HYE+ +R KS K DV +L+ W++ E FLW+GG+R S LL + QLE
Sbjct: 153 MAHYEELFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLAN----QLE- 207
Query: 133 KLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSH 192
++ QL ++ LQ+ + E LS+ + Q+++AD+
Sbjct: 208 ---------------PMTERQLMGINNLQQTSQQAEDALSQGMESLQQSLADTLSSGTLG 252
Query: 193 VVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPI 252
+ + Q + + K LE +AD+LRL+T + +I +LT
Sbjct: 253 SSSSGNVASYMGQ-----------MAMAMGKLGTLEGFIRQADNLRLQTLQQMIRVLTTR 301
Query: 253 QAVHFLIAAAELHLRLHDW 271
Q+ L+A +HD+
Sbjct: 302 QSARALLA-------IHDY 313
>sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana
tabacum GN=TGA21 PE=1 SV=1
Length = 456
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 115/258 (44%), Gaps = 34/258 (13%)
Query: 11 FLSSAAAIRNGDNNNSDGESFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVR 70
++S+ A NG N +F + WL E N+H+ L +A ++S V
Sbjct: 217 YISNIADQSNGVGANGP-LAFDAEYSRWLEEHNKHINELRTAVNA---HASDPELRSIVN 272
Query: 71 VVVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQL 130
V H+++ +R K K DV +L+ W++ E F+WIGG+RPS LL + QL
Sbjct: 273 NVTAHFDEVFRVKGNAAKADVFHVLSGMWKTPAERCFMWIGGFRPSELLKLLVN----QL 328
Query: 131 EGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVEL 190
E L+ QL + LQ+ + E LS+ + Q+++A++ L
Sbjct: 329 E----------------PLTEQQLAGIYNLQQSSHQAEDALSQGMEALQQSLAET----L 368
Query: 191 SHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILT 250
++ ++ D + ++ + + K LE +AD+LR +T + + +LT
Sbjct: 369 ANGSPAPEGSSGDVANYMGQM------AMAMGKLGTLEGFLRQADNLRQQTLQQMHRVLT 422
Query: 251 PIQAVHFLIAAAELHLRL 268
Q+ L+A E RL
Sbjct: 423 TRQSARALLAINEYFSRL 440
>sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum
PE=1 SV=2
Length = 476
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 105/245 (42%), Gaps = 45/245 (18%)
Query: 30 SFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVRVVVEHYEQYYRAKSRWVKL 89
+F + WL E N+H+ L +A+ ++ + + V ++ Y++++R K K
Sbjct: 258 AFDMEYARWLEEHNKHINELRAAANA---HAGDDDLRKIVDSIMSQYDEFFRLKGVAAKA 314
Query: 90 DVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLSSGDLGDL 149
DV +L+ W++ E F+W+GG+R S LL +G L L
Sbjct: 315 DVFHVLSGMWKTPAERCFMWLGGFRSSELLKLL--------------------AGQLEPL 354
Query: 150 SPTQLTRVDGLQRVIIKEEKDLSEKLAKYQ----ETVADSSLVEL--SHVVTELMSTNDD 203
+ QLT + LQ+ + E LS+ + Q ET+A SL S V M
Sbjct: 355 TEQQLTGICNLQQSSQQAEDALSQGMEALQQSLAETLASGSLGPAGSSGNVASYMGQ--- 411
Query: 204 RQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAE 263
+ + K LE +AD+LRL+T + + ILT Q+ L+A ++
Sbjct: 412 -------------MAMAMGKLGTLENFLRQADNLRLQTLQQMQRILTTRQSARALLAISD 458
Query: 264 LHLRL 268
RL
Sbjct: 459 YFSRL 463
>sp|Q39140|TGA6_ARATH Transcription factor TGA6 OS=Arabidopsis thaliana GN=TGA6 PE=1 SV=2
Length = 330
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 121/273 (44%), Gaps = 66/273 (24%)
Query: 11 FLSSAAAIRNGDNNNSDGESFQKFFES----WLVEQNQHLQALISASKQQENNSSSSNFE 66
F+SS+ GD +S G + F++ WL E+N+ + L SA N+ + + E
Sbjct: 95 FISSS-----GDQAHSTGGNGALAFDAEHSRWLEEKNRQMNELRSAL-----NAHAGDTE 144
Query: 67 EQVRV--VVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYS 124
++ V V+ HYE+ +R KS K DV +L+ W++ E FLW+GG+R S LL +
Sbjct: 145 LRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLAN 204
Query: 125 KSGLQLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVAD 184
QLE ++ Q+ ++ LQ+ + E LS+ + Q+++AD
Sbjct: 205 ----QLE----------------PMTERQVMGINSLQQTSQQAEDALSQGMESLQQSLAD 244
Query: 185 SSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNF------VTKEAKLEEIFHKADDLR 238
+ + D + S + + LE +AD+LR
Sbjct: 245 TLSSGTLGSSSS-----------------DNVASYMGQMAMAMGQLGTLEGFIRQADNLR 287
Query: 239 LKTFKAVIDILTPIQAVHFLIAAAELHLRLHDW 271
L+T + ++ +LT Q+ L+A +HD+
Sbjct: 288 LQTLQQMLRVLTTRQSARALLA-------IHDY 313
>sp|Q39163|TGA5_ARATH Transcription factor TGA5 OS=Arabidopsis thaliana GN=TGA5 PE=1 SV=2
Length = 330
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 118/262 (45%), Gaps = 43/262 (16%)
Query: 11 FLSSAAAIRNGDNNNS---DGE-SFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFE 66
F+SS+ GD +S DG +F + W ++N+ ++ L SA +++++ S
Sbjct: 95 FISSS-----GDQAHSTAGDGAMAFDVEYRRWQEDKNRQMKELSSAI---DSHATDSELR 146
Query: 67 EQVRVVVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKS 126
V V+ HYE+ YR K K DV +L+ W++ E FLW+GG+R S L+ S
Sbjct: 147 IIVDGVIAHYEELYRIKGNAAKSDVFHLLSGMWKTPAERCFLWLGGFRSSELLKLIAS-- 204
Query: 127 GLQLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSS 186
QLE L+ Q ++ LQ+ + E LS+ + Q+++AD+
Sbjct: 205 --QLE----------------PLTEQQSLDINNLQQSSQQAEDALSQGMDNLQQSLADTL 246
Query: 187 LVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVI 246
+ + Q + + K LE +AD+LRL+T++ ++
Sbjct: 247 SSGTLGSSSSGNVASYMGQ-----------MAMAMGKLGTLEGFIRQADNLRLQTYQQMV 295
Query: 247 DILTPIQAVHFLIAAAELHLRL 268
+LT Q+ L+A LRL
Sbjct: 296 RLLTTRQSARALLAVHNYTLRL 317
>sp|Q93ZE2|TGA7_ARATH Transcription factor TGA7 OS=Arabidopsis thaliana GN=TGA7 PE=1 SV=1
Length = 368
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 47/248 (18%)
Query: 25 NSDGESFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVRVVVEHYEQYYRAKS 84
N+ SF+ + WL EQ++ + L +A +++ S + V + HY ++ KS
Sbjct: 149 NTGIASFEMEYSHWLQEQSRRVSELRTAL---QSHISDIELKMLVESCLNHYANLFQMKS 205
Query: 85 RWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLSSG 144
K DV +++ WR+S E F WIGG+RPS +++
Sbjct: 206 DAAKADVFYLISGMWRTSTERFFQWIGGFRPSELLNVVMPY------------------- 246
Query: 145 DLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADS----SLVELSHVVTELMST 200
L L+ Q+ V LQ+ + E LS+ + K Q+++A+S +++E +H T + +
Sbjct: 247 -LQPLTDQQILEVRNLQQSSQQAEDALSQGIDKLQQSLAESIVIDAVIESTHYPTHMAAA 305
Query: 201 NDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIA 260
++ Q LE ++AD LR +T + + ILT Q+ L+A
Sbjct: 306 IENLQ--------------------ALEGFVNQADHLRQQTLQQMAKILTTRQSARGLLA 345
Query: 261 AAELHLRL 268
E RL
Sbjct: 346 LGEYLHRL 353
>sp|Q39162|TGA4_ARATH Transcription factor TGA4 OS=Arabidopsis thaliana GN=TGA4 PE=1 SV=2
Length = 364
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 109/256 (42%), Gaps = 48/256 (18%)
Query: 17 AIRNGDNNNSDGESFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVRVVVEHY 76
A+ DN +S +F+ + W+ EQN+ + L + Q S V ++HY
Sbjct: 138 ALSFSDNMSSGIVAFEMEYGHWVEEQNRQICELRTVLHGQ---VSDIELRSLVENAMKHY 194
Query: 77 EQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHD 136
Q +R KS K+DV +++ W++S E FLWIGG+RPS +L
Sbjct: 195 FQLFRMKSAAAKIDVFYVMSGMWKTSAERFFLWIGGFRPSELLKVLLPH----------- 243
Query: 137 LIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADS----SLVELSH 192
L+ QL V L++ + E LS+ + K Q T+A+S L E S+
Sbjct: 244 ---------FDPLTDQQLLDVCNLRQSCQQAEDALSQGMEKLQHTLAESVAAGKLGEGSY 294
Query: 193 VVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPI 252
+ M+ +R ++ L ++AD LR +T + + ILT
Sbjct: 295 IPQ--MTCAMERLEA-------------------LVSFVNQADHLRHETLQQMHRILTTR 333
Query: 253 QAVHFLIAAAELHLRL 268
QA L+A E RL
Sbjct: 334 QAARGLLALGEYFQRL 349
>sp|Q39237|TGA1_ARATH Transcription factor TGA1 OS=Arabidopsis thaliana GN=TGA1 PE=1 SV=2
Length = 368
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 113/275 (41%), Gaps = 57/275 (20%)
Query: 18 IRNGDNNNSDGES---------FQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQ 68
+ NG + NS G S F+ + W+ EQN+ + L + N+ + E
Sbjct: 134 VGNGIDTNSLGFSETMNPGIAAFEMEYGHWVEEQNRQICELRTVLHGHINDIELRSLVEN 193
Query: 69 VRVVVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGL 128
++HY + +R KS K DV +++ WR+S E FLWIGG+RPS
Sbjct: 194 A---MKHYFELFRMKSSAAKADVFFVMSGMWRTSAERFFLWIGGFRPS------------ 238
Query: 129 QLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADS--- 185
DL++ L L+ QL V L++ + E L++ + K Q T+AD
Sbjct: 239 -------DLLKVLLP-HFDVLTDQQLLDVCNLKQSCQQAEDALTQGMEKLQHTLADCVAA 290
Query: 186 -SLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKA 244
L E S++ Q+ S EA L ++AD LR +T +
Sbjct: 291 GQLGEGSYI--------------------PQVNSAMDRLEA-LVSFVNQADHLRHETLQQ 329
Query: 245 VIDILTPIQAVHFLIAAAELHLRLHDWGKQRDARH 279
+ ILT QA L+A E RL RH
Sbjct: 330 MYRILTTRQAARGLLALGEYFQRLRALSSSWATRH 364
>sp|Q39234|TGA3_ARATH Transcription factor TGA3 OS=Arabidopsis thaliana GN=TGA3 PE=1 SV=1
Length = 384
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 116/270 (42%), Gaps = 48/270 (17%)
Query: 1 MSVLPSSIVTFLSSAAAIRNGDNNNSDGESFQKFFESWLVEQNQHLQALISASKQQENNS 60
+ V SS ++L A N NS +F+ + WL EQN+ + + +A + +
Sbjct: 146 LCVRNSSDTSYLGPAG------NMNSGIAAFEMEYTHWLEEQNRRVSEIRTALQ-----A 194
Query: 61 SSSNFEEQVRV--VVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMA 118
+ E ++ V + HY +R K+ K DV +++ WR+S E F WIGG+RPS
Sbjct: 195 HIGDIELKMLVDSCLNHYANLFRMKADAAKADVFFLMSGMWRTSTERFFQWIGGFRPSEL 254
Query: 119 FHLLYSKSGLQLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKY 178
+++ + L+ QL V LQ+ + E+ LS+ L K
Sbjct: 255 LNVVMPY--------------------VEPLTDQQLLEVRNLQQSSQQAEEALSQGLDKL 294
Query: 179 QETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLR 238
Q+ + +S +++ V E ++ + L LE ++AD LR
Sbjct: 295 QQGLVESIAIQIK--VVESVNHGAPMASAMENLQ-------------ALESFVNQADHLR 339
Query: 239 LKTFKAVIDILTPIQAVHFLIAAAELHLRL 268
+T + + ILT QA L+A E RL
Sbjct: 340 QQTLQQMSKILTTRQAARGLLALGEYFHRL 369
>sp|P23923|HBP1B_WHEAT Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1
Length = 332
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 116/270 (42%), Gaps = 55/270 (20%)
Query: 11 FLSSAAAIRNGDNNNSDGESFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVR 70
F+SS+A + + N +F + WL E N+ + L +A N+ + + E +R
Sbjct: 95 FISSSADQSHSMSGNG-ALAFDTEYARWLEEHNRQVNELRAAV-----NAHAGDTE--LR 146
Query: 71 VVVE----HYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKS 126
VVE HY++ ++ K K DV +L+ W++ E FLW+GG+RPS LL
Sbjct: 147 SVVEKIMSHYDEIFKQKGNAAKADVFHVLSGMWKTPAERCFLWLGGFRPSELLKLL---- 202
Query: 127 GLQLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSS 186
S L L+ QL+ + LQ+ + E LS+ + Q+++A+ +
Sbjct: 203 ----------------STQLEPLTEQQLSGICNLQQSSQQAEDALSQGMEALQQSLAE-T 245
Query: 187 LVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEA-------KLEEIFHKADDLRL 239
L + N +N++ + A LE +AD+LR
Sbjct: 246 LAGSIGSSGSGSTGN---------------VANYMGQMAMAMGKLGTLENFLSQADNLRQ 290
Query: 240 KTFKAVIDILTPIQAVHFLIAAAELHLRLH 269
+T + + ILT Q+ L+ ++ RL
Sbjct: 291 QTLQQMQRILTTRQSARALLVISDYSSRLR 320
>sp|P14232|TGA1A_TOBAC TGACG-sequence-specific DNA-binding protein TGA-1A OS=Nicotiana
tabacum GN=TGA1A PE=1 SV=1
Length = 359
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 48/211 (22%)
Query: 66 EEQVRVVVE----HYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHL 121
E ++R++V+ HY +R K+ K DVL +++ W++S E F+WIGG+RPS +
Sbjct: 174 EAELRIIVDGYLNHYFDLFRMKATAAKADVLYIMSGMWKTSAERFFMWIGGFRPSELLKV 233
Query: 122 LYSKSGLQLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQ-- 179
L + L L+ QL V L + + E LS+ + K
Sbjct: 234 L--------------------TPHLELLTEQQLREVCNLTQSCQQAEDALSQGMVKLHQI 273
Query: 180 --ETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDL 237
E VA L E ++ + ++ + +D R FV ++AD L
Sbjct: 274 LAEAVAAGRLGEGNYTLPQMGPAIEKLEDLVR----------FV----------NQADHL 313
Query: 238 RLKTFKAVIDILTPIQAVHFLIAAAELHLRL 268
R +T + + IL QA L+A E RL
Sbjct: 314 RQETLQQMSRILNTCQAAQGLLALGEYFERL 344
>sp|Q9SX27|PAN_ARATH Transcription factor PERIANTHIA OS=Arabidopsis thaliana GN=PAN PE=1
SV=1
Length = 452
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 30 SFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVRVVVEHYEQYYRAKSRWVKL 89
SF+ + W E + + L S Q ++ + V V+ HY++ +R K K+
Sbjct: 235 SFELEYTRWKEEHQRMINDLRSGVNSQLGDN---DLRVLVDAVMSHYDEIFRLKGIGTKV 291
Query: 90 DVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLL 122
DV ML+ W++ E F+W+GG+R S +L
Sbjct: 292 DVFHMLSGMWKTPAERFFMWLGGFRSSELLKIL 324
>sp|Q5E2P8|MURD_VIBF1 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Vibrio fischeri
(strain ATCC 700601 / ES114) GN=murD PE=3 SV=2
Length = 440
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 109 WIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLSSG-DLGDLSP 151
W+ + + L + SGLQLEGKLH L+ G+ G D +LSP
Sbjct: 315 WVNDSKATNVASTLAALSGLQLEGKLHLLVGGVGKGADFSELSP 358
>sp|B5FB37|MURD_VIBFM UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Vibrio fischeri
(strain MJ11) GN=murD PE=3 SV=1
Length = 440
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 109 WIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLSSG-DLGDLSP 151
W+ + + L + SGLQLEGKLH L+ G+ G D +LSP
Sbjct: 315 WVNDSKATNVASTLAALSGLQLEGKLHLLVGGVGKGADFSELSP 358
>sp|A7ZG18|RRF_CAMC1 Ribosome-recycling factor OS=Campylobacter concisus (strain 13826)
GN=frr PE=3 SV=1
Length = 185
Score = 34.7 bits (78), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 1 MSVLP--SSIVTFLSSAAAIRN-GDNNNSDGESFQKFFESWLVEQNQ----HLQAL 49
+++ P S++ +SSA N G N NSDGES + FF VEQ Q H +A+
Sbjct: 65 IAITPWEKSMIKAISSAIQAANIGVNPNSDGESVKLFFPPMTVEQRQENAKHAKAM 120
>sp|Q9UHP3|UBP25_HUMAN Ubiquitin carboxyl-terminal hydrolase 25 OS=Homo sapiens GN=USP25
PE=1 SV=4
Length = 1055
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 83 KSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLY 123
+SRW+K + + + SW + DSF GG+R + A+ L+Y
Sbjct: 617 ESRWMKYNDIAVTKSSWEELVRDSF---GGYRNASAYCLMY 654
>sp|P57080|UBP25_MOUSE Ubiquitin carboxyl-terminal hydrolase 25 OS=Mus musculus GN=Usp25
PE=1 SV=2
Length = 1055
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 83 KSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLY 123
+SRW+K + + + SW + DSF GG+R + A+ L+Y
Sbjct: 618 ESRWMKYNDIAVTKSSWEELVRDSF---GGYRNASAYCLMY 655
>sp|B6ELH7|MURD_ALISL UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Aliivibrio
salmonicida (strain LFI1238) GN=murD PE=3 SV=1
Length = 442
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 109 WIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLSSG-DLGDLSP 151
W+ + + L + SGL +EGKLH L+ G+ G D +LSP
Sbjct: 317 WVNDSKATNVASTLAALSGLSIEGKLHLLVGGVGKGADFSELSP 360
>sp|Q5SWU9|ACACA_MOUSE Acetyl-CoA carboxylase 1 OS=Mus musculus GN=Acaca PE=1 SV=1
Length = 2345
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 84 SRWVKLDVL---GMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRG 140
S VKLD+ G L+P+ SS S L I G + +AFH+ S SGL L + D +
Sbjct: 34 SNLVKLDLEEKEGSLSPASVSSDTLSDLGISGLQDGLAFHMRSSMSGLHLVKQGRDRKKI 93
Query: 141 LSSGDLGDLSPTQLTRVDGLQRVIIK 166
S D SP + G +VI K
Sbjct: 94 DSQRDFTVASPAEFVTRFGGNKVIEK 119
>sp|O59807|PEX32_SCHPO Peroxisomal membrane protein pex32 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pex32 PE=3 SV=1
Length = 535
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 21/115 (18%)
Query: 165 IKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDS------DRRLMDDQIES 218
+ EEK+ + + K +E ++ +SH+VTEL ++ +S + +L ++Q++S
Sbjct: 180 VTEEKEKNAEQNKRRERLS------ISHIVTELAKKDEVSSESGSNEIVNAKLKNEQLDS 233
Query: 219 NFVTKEAKLEEIFH------KADDLRLKTFKAVIDILT---PIQAVHFLIAAAEL 264
NF +A LE + H +++ L V+ IL P QA+ ++++ L
Sbjct: 234 NFTLLDAYLEPLVHLHEYSRRSNTLFFFYLPIVMSILIFCLPTQALFIVLSSVFL 288
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,285,621
Number of Sequences: 539616
Number of extensions: 3999107
Number of successful extensions: 14496
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 14447
Number of HSP's gapped (non-prelim): 85
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)