Query 023115
Match_columns 287
No_of_seqs 115 out of 222
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 16:37:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y39_A Nickel and cobalt resis 97.0 0.0089 3E-07 48.7 11.1 89 148-263 20-111 (118)
2 3itf_A Periplasmic adaptor pro 95.2 0.11 3.7E-06 43.5 9.2 91 145-263 43-133 (145)
3 3o39_A Periplasmic protein rel 92.9 0.1 3.5E-06 41.6 4.3 83 149-258 18-100 (108)
4 3oeo_A Spheroplast protein Y; 91.3 0.066 2.3E-06 44.2 1.5 91 145-263 31-121 (138)
5 3lay_A Zinc resistance-associa 89.8 4.2 0.00014 34.8 11.6 40 147-186 66-105 (175)
6 1zbd_B Rabphilin-3A; G protein 37.9 40 0.0014 27.3 4.6 46 140-185 1-46 (134)
7 3v22_V Ribosome modulation fac 33.0 5.4 0.00018 28.7 -1.2 18 104-121 35-52 (61)
8 2jrm_A Ribosome modulation fac 31.6 5.9 0.0002 28.8 -1.2 19 101-120 33-51 (65)
9 2ke4_A CDC42-interacting prote 23.8 2.4E+02 0.0084 21.5 9.8 44 143-187 5-53 (98)
10 1w85_A Pyruvate dehydrogenase 23.2 1.3E+02 0.0043 28.1 6.0 63 17-82 265-331 (368)
11 1ykh_B RNA polymerase II holoe 23.1 1.7E+02 0.0057 23.4 6.0 109 63-182 6-119 (132)
12 1umd_A E1-alpha, 2-OXO acid de 22.5 2.7E+02 0.0091 25.6 8.1 81 19-102 269-352 (367)
13 1yke_B RNA polymerase II holoe 20.9 1.8E+02 0.0062 23.9 5.9 109 63-182 6-119 (151)
14 2zet_C Melanophilin; complex, 20.5 2.2E+02 0.0077 23.3 6.3 42 143-184 11-52 (153)
No 1
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=96.97 E-value=0.0089 Score=48.65 Aligned_cols=89 Identities=13% Similarity=0.120 Sum_probs=67.6
Q ss_pred CCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCCCcchhhhhhHHHHHHHHHhHHHH
Q 023115 148 DLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKL 227 (287)
Q Consensus 148 ~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~m~~a~~~kl~~L 227 (287)
+||++|-..|+.++..-.....+|..+|......+++.+..+ .+ ++ -++..|+...-.
T Consensus 20 ~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~~--------~~--~~----------p~V~aaid~~h~-- 77 (118)
T 2y39_A 20 PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKN--------PA--WS----------PEVEAATQEVER-- 77 (118)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CS--CC----------HHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cc--cC----------HHHHHHHHHHHH--
Confidence 399999999999999999999999999999999999887421 11 22 245455433322
Q ss_pred HHHHHHhhHHHHHH---HHHHHhhcCHHHHHHHHHHHHH
Q 023115 228 EEIFHKADDLRLKT---FKAVIDILTPIQAVHFLIAAAE 263 (287)
Q Consensus 228 ~~~l~qAD~LR~~T---L~~l~~ILTp~QAA~fL~A~~e 263 (287)
..-.|+..| +-+|..||||-|+..|=-.+.+
T Consensus 78 -----~mG~LQkeTi~HvfeMR~VLtPeQ~~~fd~~vv~ 111 (118)
T 2y39_A 78 -----AAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLID 111 (118)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444588999 6667899999999999766554
No 2
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=95.15 E-value=0.11 Score=43.49 Aligned_cols=91 Identities=15% Similarity=0.148 Sum_probs=57.9
Q ss_pred CCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCCCcchhhhhhHHHHHHHHHhH
Q 023115 145 DLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKE 224 (287)
Q Consensus 145 ~l~~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~m~~a~~~kl 224 (287)
.|. ||++|..+|..|....+.+.+.++. +.- +.+-+.+ .. +. +| ++++...+
T Consensus 43 ~L~-LTdeQkqqir~L~~~~r~~~~~~~~--~~r-~~l~~Li-----------~a---d~-------fD---eaa~ral~ 94 (145)
T 3itf_A 43 GIS-LTEHQRQQMRDLMQQARHEQPPVNV--SEL-ETMHRLV-----------TA---EN-------FD---ENAVRAQA 94 (145)
T ss_dssp TCC-CCHHHHHHHHHHHHHHHHHSCCCCH--HHH-HHHHHHH-----------TC---SS-------CC---HHHHHHHH
T ss_pred cCC-CCHHHHHHHHHHHHHHHHHhhhccH--HHH-HHHHHHH-----------cc---CC-------CC---HHHHHHHH
Confidence 444 9999999999999888876554421 111 1111111 01 11 11 13444555
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 023115 225 AKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAE 263 (287)
Q Consensus 225 ~~L~~~l~qAD~LR~~TL~~l~~ILTp~QAA~fL~A~~e 263 (287)
+.+...-.+.--.|.++-.+|..||||-|-+.|-.-..+
T Consensus 95 ~~~~~~~~e~~v~r~k~~~qiy~vLTPEQk~ql~e~~~~ 133 (145)
T 3itf_A 95 EKMANEQIARQVEMAKVRNQMYRLLTPEQQAVLNEKHQQ 133 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 566666666666889999999999999999998764443
No 3
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=92.90 E-value=0.1 Score=41.60 Aligned_cols=83 Identities=20% Similarity=0.189 Sum_probs=48.0
Q ss_pred CcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCCCcchhhhhhHHHHHHHHHhHHHHH
Q 023115 149 LSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLE 228 (287)
Q Consensus 149 LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~m~~a~~~kl~~L~ 228 (287)
||++|..+|-.|....+.+-+.... +.- +.+-+.+ . .+.+ | ++++...++.+.
T Consensus 18 LTd~Qk~qir~L~~~~r~~~~~~~~--~~r-~~m~~Li------------~--ad~F-------D---Eaaar~l~~~~~ 70 (108)
T 3o39_A 18 LTDAQKQQIREIMKGQRDQMKRPPL--EER-RAMHDII------------A--SDTF-------D---KAKAEAQIAKME 70 (108)
T ss_dssp CCHHHHHHHHHHHHTTTTSCCCCCH--HHH-HHHHHHH------------S--SSSC-------C---HHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHHHHHhcccccH--HHH-HHHHHHh------------c--cCCC-------C---HHHHHHHHHHHH
Confidence 9999999999998887765332221 111 1111111 1 1111 1 122333334444
Q ss_pred HHHHHhhHHHHHHHHHHHhhcCHHHHHHHH
Q 023115 229 EIFHKADDLRLKTFKAVIDILTPIQAVHFL 258 (287)
Q Consensus 229 ~~l~qAD~LR~~TL~~l~~ILTp~QAA~fL 258 (287)
..-.+.---|.++=.+|..||||-|-+.|-
T Consensus 71 ~~~~e~~v~~~r~~~qmy~lLTPEQk~q~~ 100 (108)
T 3o39_A 71 EQRKANMLAHMETQNKIYNILTPEQKKQFN 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 444444446888899999999999998874
No 4
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=91.35 E-value=0.066 Score=44.22 Aligned_cols=91 Identities=21% Similarity=0.161 Sum_probs=54.1
Q ss_pred CCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCCCcchhhhhhHHHHHHHHHhH
Q 023115 145 DLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKE 224 (287)
Q Consensus 145 ~l~~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~m~~a~~~kl 224 (287)
.|. ||++|..+|..|.+..+..-.. .+....+.+.+.+. . + .+ .. +++...+
T Consensus 31 ~L~-LT~eQ~~qir~i~~~~r~~~~~---~~~~~r~~l~~Li~-----------a--~-~f------De----aav~al~ 82 (138)
T 3oeo_A 31 DLN-LTDAQKQQIREIMKGQRDQMKR---PPLEERRAMHDIIT-----------S--D-TF------DK----VKAEAQI 82 (138)
T ss_dssp CSC-CCTTHHHHHHHHHHHHSSSSCC---CCTTHHHHHHHHHT-----------C--S-SC------CH----HHHHHHH
T ss_pred cCC-CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc-----------c--C-CC------CH----HHHHHHH
Confidence 454 9999999999998777654221 11111122222111 1 1 11 11 2233444
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 023115 225 AKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAE 263 (287)
Q Consensus 225 ~~L~~~l~qAD~LR~~TL~~l~~ILTp~QAA~fL~A~~e 263 (287)
+.+...-.+.-..|.++..+|..||||-|-+.|---..+
T Consensus 83 ~~~~~~~~e~~~~~~~~~~~~~~vLTPEQr~q~~~~~~k 121 (138)
T 3oeo_A 83 AKMEEQRKANMLAHMETQNKIYNILTPEQKKQFNANFEK 121 (138)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444455555666789999999999999999998765554
No 5
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=89.82 E-value=4.2 Score=34.82 Aligned_cols=40 Identities=10% Similarity=0.049 Sum_probs=34.3
Q ss_pred CCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023115 147 GDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSS 186 (287)
Q Consensus 147 ~~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~ 186 (287)
-+||++|..++..|+++.+.+-.+|.+.|...++.+.+..
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~ 105 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALL 105 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999999999999888888876654
No 6
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=37.91 E-value=40 Score=27.35 Aligned_cols=46 Identities=11% Similarity=0.115 Sum_probs=31.2
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 023115 140 GLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADS 185 (287)
Q Consensus 140 g~~~~~l~~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~ 185 (287)
|...++++.||++....|-+.=++-.+.|..=.+++.+|++.+.+.
T Consensus 1 ~~~~~dls~LteeE~~~Il~Vl~Rd~~l~~~E~~ri~kL~~~l~~~ 46 (134)
T 1zbd_B 1 GSHMRKQEELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETM 46 (134)
T ss_dssp -------CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCCHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 3456899999999988888877777777777777777777777664
No 7
>3v22_V Ribosome modulation factor; stress response, small subunit H movement, stationary phase, ribosome hibernation; 3.00A {Escherichia coli} PDB: 3v24_V
Probab=33.05 E-value=5.4 Score=28.66 Aligned_cols=18 Identities=39% Similarity=0.953 Sum_probs=12.2
Q ss_pred HHHHHHhcCCCchHHHHH
Q 023115 104 EDSFLWIGGWRPSMAFHL 121 (287)
Q Consensus 104 Er~fLWiGG~RPS~~l~L 121 (287)
+-.-.|+||||--.--++
T Consensus 35 ~~r~~Wl~GWReg~~d~~ 52 (61)
T 3v22_V 35 NQRSQWLGGWREAMADRV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 445789999996544333
No 8
>2jrm_A Ribosome modulation factor; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Vibrio parahaemolyticus}
Probab=31.58 E-value=5.9 Score=28.79 Aligned_cols=19 Identities=32% Similarity=0.725 Sum_probs=12.2
Q ss_pred ChhHHHHHHhcCCCchHHHH
Q 023115 101 SSLEDSFLWIGGWRPSMAFH 120 (287)
Q Consensus 101 tplEr~fLWiGG~RPS~~l~ 120 (287)
+.--|. .|+||||--.--+
T Consensus 33 ~~~~r~-~Wl~GWRegred~ 51 (65)
T 2jrm_A 33 QVDARS-YWLGGWRDARDEK 51 (65)
T ss_dssp SHHHHH-HHHHHHHHHHHHH
T ss_pred CcHHHH-HHHHHHHHHHHHH
Confidence 333344 8999999764433
No 9
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.81 E-value=2.4e+02 Score=21.47 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=33.0
Q ss_pred CCCCCCCcHHHH-----HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 023115 143 SGDLGDLSPTQL-----TRVDGLQRVIIKEEKDLSEKLAKYQETVADSSL 187 (287)
Q Consensus 143 ~~~l~~LS~~Ql-----~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~ 187 (287)
..+.++|.++|. .+|++|+..+.++.++ .++|.+++......|.
T Consensus 5 ~~d~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~-regl~Km~~vY~~nP~ 53 (98)
T 2ke4_A 5 TEDFSHLPPEQQRKRLQQQLEERSRELQKEVDQ-REALKKMKDVYEKTPQ 53 (98)
T ss_dssp CSCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHCGG
T ss_pred chhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCc
Confidence 457788989885 3477888888777777 6778888888777764
No 10
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=23.22 E-value=1.3e+02 Score=28.05 Aligned_cols=63 Identities=11% Similarity=0.158 Sum_probs=42.1
Q ss_pred cccCCCCC-CCcchhH---HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHhHHHHHHH
Q 023115 17 AIRNGDNN-NSDGESF---QKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVRVVVEHYEQYYRA 82 (287)
Q Consensus 17 ~~~~g~~~-~~~~~~F---~~~Y~~W~~eq~~~l~eLr~Al~~~~~~~sd~eL~~LV~~~l~HY~~y~~~ 82 (287)
+.|-+.++ +++...+ .++|+.|.. ..-+..++..|-+ .+-.++.++..+.+++-...++-++.
T Consensus 265 t~r~~gHs~~~Ddp~~yr~~~e~~~~~~--~dPi~~~~~~L~~-~g~~~~~~~~~i~~~~~~~v~~a~~~ 331 (368)
T 1w85_A 265 CFRYGPHTMSGDDPTRYRSKELENEWAK--KDPLVRFRKFLEA-KGLWSEEEENNVIEQAKEEIKEAIKK 331 (368)
T ss_dssp CCCSSCSCSSCC------CHHHHHHHHT--TCHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccCCCCCCCCCccccCCHHHHHHHhc--CCHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677 6554333 478999986 4677888887753 23356788999998888888877654
No 11
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=23.13 E-value=1.7e+02 Score=23.45 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=57.2
Q ss_pred chHHHHHHHHHHhHHHHHHHHhhhhhccccccc--CCCCCChhHHHHHHhcCCCchHHHHHHHhhhh---hhhhhhhhhh
Q 023115 63 SNFEEQVRVVVEHYEQYYRAKSRWVKLDVLGML--TPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSG---LQLEGKLHDL 137 (287)
Q Consensus 63 ~eL~~LV~~~l~HY~~y~~~Ks~aA~~DV~~ll--sp~W~tplEr~fLWiGG~RPS~~l~Llys~~g---~q~E~~l~~~ 137 (287)
.+|+.-|+....||......-..-|.-..|.=. .++..++.. .-| ..|.-....+. +.-+-+|.-+
T Consensus 6 TQLQd~ldqla~~f~nsig~Lq~~a~p~~~~~~~~~~~~~~~~~--------~~~-~~f~~~~~ela~dli~k~kqIe~L 76 (132)
T 1ykh_B 6 TQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATV--------VPP-EEFSNTIDELSTDIILKTRQINKL 76 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCC---------------C--------CCH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCccCCC--------CCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888999999988888866543332222100 011111100 111 22221111111 0011233334
Q ss_pred hhcCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 023115 138 IRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETV 182 (287)
Q Consensus 138 l~g~~~~~l~~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~sl 182 (287)
++- .|.++.-.++|..+|..|+.+.+.+|..+-+.+.+-..-+
T Consensus 77 Ids--LP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll 119 (132)
T 1ykh_B 77 IDS--LPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLM 119 (132)
T ss_dssp HHH--STTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 3455555789999999999999999998887776654433
No 12
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=22.54 E-value=2.7e+02 Score=25.61 Aligned_cols=81 Identities=9% Similarity=0.037 Sum_probs=52.9
Q ss_pred cCCCCCCCcc-hh--HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHhHHHHHHHHhhhhhccccccc
Q 023115 19 RNGDNNNSDG-ES--FQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVRVVVEHYEQYYRAKSRWVKLDVLGML 95 (287)
Q Consensus 19 ~~g~~~~~~~-~~--F~~~Y~~W~~eq~~~l~eLr~Al~~~~~~~sd~eL~~LV~~~l~HY~~y~~~Ks~aA~~DV~~ll 95 (287)
|.++++.++. .. =..+|+.|.. ..-+..++.-|.+. +..++.++..+.+++-...++.++.-.....-|+-.+|
T Consensus 269 r~~Ghs~~D~~~~Yr~~~e~~~~~~--~dPi~~~~~~L~~~-g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~ 345 (367)
T 1umd_A 269 RYGPHSSADDDSRYRPKEEVAFWRK--KDPIPRFRRFLEAR-GLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMF 345 (367)
T ss_dssp CCSCSSTTCCGGGTSCHHHHHHHHT--TCHHHHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHHHHHTCBCCGGGGG
T ss_pred cCCCCCCCCCccccCCHHHHHHHHc--CCHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4444555443 22 2578889986 46777778777632 33567889999999988888877753334455666666
Q ss_pred CCCCCCh
Q 023115 96 TPSWRSS 102 (287)
Q Consensus 96 sp~W~tp 102 (287)
...|..+
T Consensus 346 ~~vy~~~ 352 (367)
T 1umd_A 346 EDVFAEK 352 (367)
T ss_dssp TTSSSSC
T ss_pred hhhcCCC
Confidence 6666653
No 13
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.91 E-value=1.8e+02 Score=23.89 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=57.6
Q ss_pred chHHHHHHHHHHhHHHHHHHHhhhhhccccccc--CCCCCChhHHHHHHhcCCCchHHHHHHHhhhh---hhhhhhhhhh
Q 023115 63 SNFEEQVRVVVEHYEQYYRAKSRWVKLDVLGML--TPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSG---LQLEGKLHDL 137 (287)
Q Consensus 63 ~eL~~LV~~~l~HY~~y~~~Ks~aA~~DV~~ll--sp~W~tplEr~fLWiGG~RPS~~l~Llys~~g---~q~E~~l~~~ 137 (287)
.+|+.-|+....+|......-..-|.--.|.=. .++..++.. .-| ..|.-....+. +.-+-+|.-+
T Consensus 6 TQLQd~ldqLa~~f~nsig~Lq~~app~~~~~~~~~~~~~~~~~--------~~~-~~f~~~~~ela~dli~kakqIe~L 76 (151)
T 1yke_B 6 TQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATV--------VPP-EEFSNTIDELSTDIILKTRQINKL 76 (151)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHTTGGGGCCC--------------------CCH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcCCCC--------CCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888777765433332222100 011111000 011 12221111111 0012233334
Q ss_pred hhcCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 023115 138 IRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETV 182 (287)
Q Consensus 138 l~g~~~~~l~~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~sl 182 (287)
++- .|.++.-.++|..+|.+|+.+.+.+|..+.+.+.+-..-+
T Consensus 77 Ids--LPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll 119 (151)
T 1yke_B 77 IDS--LPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLL 119 (151)
T ss_dssp HHH--CTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 3455555789999999999999999999888776655444
No 14
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=20.50 E-value=2.2e+02 Score=23.32 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=30.6
Q ss_pred CCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q 023115 143 SGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVAD 184 (287)
Q Consensus 143 ~~~l~~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad 184 (287)
.++|+.|||+....|-++=++-...+..-.+++.+|.+.+..
T Consensus 11 ~~dLs~LteeEr~~Il~VL~Rd~~l~~~EeeRi~kLk~~l~~ 52 (153)
T 2zet_C 11 RLDLSTLTDEEAEHVWAVVQRDFDLRRREEERLQGLKGKIQK 52 (153)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Confidence 579999999999998777666665555556666677666543
Done!