Query 023115
Match_columns 287
No_of_seqs 115 out of 222
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 16:37:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023115.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023115hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1olma1 a.5.3.1 (A:1-75) Super 39.6 9.4 0.00068 25.8 2.8 22 143-164 2-23 (75)
2 d1ykhb1 a.252.1.1 (B:2-130) RN 29.6 54 0.0039 24.5 6.1 40 143-182 79-118 (129)
3 d1b33n_ d.30.1.1 (N:) Allophyc 25.7 18 0.0013 24.3 2.1 13 35-47 33-45 (67)
4 d1bf5a1 a.47.1.1 (A:136-316) S 23.6 1.6E+02 0.011 23.0 11.9 84 154-240 68-151 (181)
5 d1wgwa_ a.24.13.1 (A:) Signal 21.1 15 0.0011 26.5 1.1 46 140-185 1-46 (99)
6 d1zbdb_ g.50.1.1 (B:) Effector 20.5 59 0.0043 23.6 4.6 40 147-186 1-40 (124)
7 d1uuja_ a.221.1.1 (A:) Lissenc 17.6 46 0.0033 22.9 3.1 19 248-266 1-19 (76)
8 d1gg2g_ a.137.3.1 (G:) Transdu 16.0 70 0.0051 20.4 3.5 44 39-94 2-45 (54)
9 d1fi4a2 d.58.26.2 (A:191-393) 15.7 1.2E+02 0.0089 24.2 5.8 42 33-81 30-72 (203)
10 d1k78a1 a.4.1.5 (A:19-81) Pax- 14.2 80 0.0058 20.7 3.5 23 236-258 18-40 (63)
No 1
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.59 E-value=9.4 Score=25.76 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=18.8
Q ss_pred CCCCCCCcHHHHHHHHHHhHHH
Q 023115 143 SGDLGDLSPTQLTRVDGLQRVI 164 (287)
Q Consensus 143 ~~~l~~LS~~Ql~~I~~Lq~~t 164 (287)
+|.++.||++|...|.+|+..+
T Consensus 2 ~g~~gelt~~q~~~l~elr~~l 23 (75)
T d1olma1 2 SGRVGDLSPRQKEALAKFRENV 23 (75)
T ss_dssp CSBTTBCCHHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHHH
Confidence 3689999999999999988664
No 2
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.55 E-value=54 Score=24.45 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=31.0
Q ss_pred CCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 023115 143 SGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETV 182 (287)
Q Consensus 143 ~~~l~~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~sl 182 (287)
.|.++.=.+.|+.+|..|+.+.+..|..+.+.+.+...-+
T Consensus 79 LP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll 118 (129)
T d1ykhb1 79 LPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLM 118 (129)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555689999999999999999998887776654433
No 3
>d1b33n_ d.30.1.1 (N:) Allophycocyanin linker chain (domain) {Mastigocladus laminosus [TaxId: 83541]}
Probab=25.71 E-value=18 Score=24.32 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q 023115 35 FESWLVEQNQHLQ 47 (287)
Q Consensus 35 Y~~W~~eq~~~l~ 47 (287)
|+.|+.||.+...
T Consensus 33 y~nWf~EQQrI~K 45 (67)
T d1b33n_ 33 YENWFREQQRIQK 45 (67)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8999999987653
No 4
>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.63 E-value=1.6e+02 Score=22.95 Aligned_cols=84 Identities=11% Similarity=0.127 Sum_probs=55.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHH
Q 023115 154 LTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHK 233 (287)
Q Consensus 154 l~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~m~~a~~~kl~~L~~~l~q 233 (287)
...+++.+++....-.++-..+..+|..+.+.-+.+|-+..--++ +|+|+...-..-..-. +++..-+=.++..+++
T Consensus 68 ~~~L~~~R~e~~~k~~~~l~~~~~lq~~ll~~eL~eWKr~QQ~a~--iG~p~~~~LdqLQ~W~-e~lae~l~q~rqqlkk 144 (181)
T d1bf5a1 68 YLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSAC--IGGPPNACLDQLQNWF-TIVAESLQQVRQQLKK 144 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTSSCCCCTHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCcccHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 446778888888888888889999999999988889987433222 2444322111011112 3344556677888888
Q ss_pred hhHHHHH
Q 023115 234 ADDLRLK 240 (287)
Q Consensus 234 AD~LR~~ 240 (287)
++.|+.+
T Consensus 145 l~el~~k 151 (181)
T d1bf5a1 145 LEELEQK 151 (181)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888765
No 5
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.07 E-value=15 Score=26.48 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=39.6
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 023115 140 GLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADS 185 (287)
Q Consensus 140 g~~~~~l~~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~ 185 (287)
|...+...+|+..-...+..|+.+...-|..+.+-+.+++.++-++
T Consensus 1 ~~~~~~~a~L~~~i~~a~~~l~~~~~i~E~~I~~~l~eI~~ALLeA 46 (99)
T d1wgwa_ 1 GSSGSSGADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEA 46 (99)
T ss_dssp CCCSSSCSHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCcchhhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 3446677889999999999999999999999999999999999554
No 6
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.50 E-value=59 Score=23.56 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=30.5
Q ss_pred CCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023115 147 GDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSS 186 (287)
Q Consensus 147 ~~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~ 186 (287)
++||+++...|.++-++-...+..-.+++.++.+.+.+..
T Consensus 1 ~~LT~eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l~~~~ 40 (124)
T d1zbdb_ 1 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMR 40 (124)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689988888887777777777777788888888876643
No 7
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.56 E-value=46 Score=22.91 Aligned_cols=19 Identities=21% Similarity=0.086 Sum_probs=16.4
Q ss_pred hcCHHHHHHHHHHHHHHHH
Q 023115 248 ILTPIQAVHFLIAAAELHL 266 (287)
Q Consensus 248 ILTp~QAA~fL~A~~e~~~ 266 (287)
|||++|+.+-=-|+.+|..
T Consensus 1 iLt~rQ~eeL~kaI~~Yl~ 19 (76)
T d1uuja_ 1 VLSQRQRDELNRAIADYLR 19 (76)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 7899999998888888874
No 8
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.00 E-value=70 Score=20.36 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHhHHHHHHHHhhhhhcccccc
Q 023115 39 LVEQNQHLQALISASKQQENNSSSSNFEEQVRVVVEHYEQYYRAKSRWVKLDVLGM 94 (287)
Q Consensus 39 ~~eq~~~l~eLr~Al~~~~~~~sd~eL~~LV~~~l~HY~~y~~~Ks~aA~~DV~~l 94 (287)
++.+++.+.+||..++- =|.-|.++...+..|++.. +..|.|-.
T Consensus 2 i~q~rk~VeqLr~e~~~---------~RikvS~aa~~l~~y~e~~---~~~Dpll~ 45 (54)
T d1gg2g_ 2 IAQARKLVEQLKMEANI---------DRIKVSKAAADLMAYCEAH---AKEDPLLT 45 (54)
T ss_dssp HHHHHHHHHHHHHHHSS---------CCCCHHHHHHHHHHHHHHH---GGGCTTTS
T ss_pred HHHHHHHHHHHHHHhCC---------chhhHHHHHHHHHHHHHhc---CcCCCCcC
Confidence 45678889999887751 1233666667777777766 78887653
No 9
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.73 E-value=1.2e+02 Score=24.21 Aligned_cols=42 Identities=7% Similarity=0.188 Sum_probs=32.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHhHHHHHH
Q 023115 33 KFFESWLVE-QNQHLQALISASKQQENNSSSSNFEEQVRVVVEHYEQYYR 81 (287)
Q Consensus 33 ~~Y~~W~~e-q~~~l~eLr~Al~~~~~~~sd~eL~~LV~~~l~HY~~y~~ 81 (287)
.+|..|++. ..+++.+++.|++ +.++..+-+-++....+...
T Consensus 30 pl~~~r~~~~~p~r~~~m~~AI~-------~rDF~~f~eite~ds~~mHA 72 (203)
T d1fi4a2 30 ELFKERIEHVVPKRFEVMRKAIV-------EKDFATFAKETMMDSNSFHA 72 (203)
T ss_dssp SHHHHHHHTHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhHHHHHHHHHHHH-------hCCHHHHHHHHHHhHHHHHH
Confidence 589999996 5788999999987 44677777777777666444
No 10
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.16 E-value=80 Score=20.69 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHH
Q 023115 236 DLRLKTFKAVIDILTPIQAVHFL 258 (287)
Q Consensus 236 ~LR~~TL~~l~~ILTp~QAA~fL 258 (287)
+||.+.+.-+.+=++++|+|+=|
T Consensus 18 DLR~Riv~~~~~G~s~r~aA~rf 40 (63)
T d1k78a1 18 VVRQRIVELAHQGVRPCDISRQL 40 (63)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHh
Confidence 58999998888889999999844
Done!